Citrus Sinensis ID: 003888

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------79
Protein Sequence
MFDCKVNGLVRGQGFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDIDSFFITFTTSYVVVIFGIVIVLYVNSYWRRKWFYFVEMWITSCYYFVVDNLIPTRFCH
Secondary Structure (PSIPRED)
ccccccccccccccccccccccEEEccccccccccccHHHHHcccccccEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccHHcccccccccEEEcccccccEEcccccccccccccccEEEccccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEccccEEEEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEcccccccccccEEEccccccEEEcccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccEEEEEccccccccEEEEccccccccccHHHHHccccccccccccccccccccccccccccccEEEcccccccccccHHHHcccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEHHHHHHHHHHHHEEEEEEEEcccHHHHHHHHHHHHcEEEEEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHccccEEEEEEccccccccccHHHHHccccccEEEcccccccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEEccccccccccHHHHHccccccEEEcccccccccccHHHHHcccccEEEEEccccccccccHHHcccccccccEEEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHHHHHHcccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHcccccEEEEEccccccccccHHHHccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEccccccccccccccccccccHHHHHHHccccccccccccccHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccccccccccHcccccccEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHEEEEcccccccccc
Coil and Loop (DISEMBL)
mfdckvnglvrgqgfphfksldHLDMVFARTALNTSFLQIIRESMpslkylsmsdstlgtnssrILDQGLCSLMHLQElyidnndlrgslpwclanmtslrildvssnqltgsisssplvhLTSIEELMlsnnhfqipisleplfnhsrlkIFDAANNEIKAEIteshsltapnfQLQALslssgygdgvtfpkflyhqhdledvrlshvnmdgefpnwllennTKLRQLYLVndsltgpfrlpihshrwlRFLDvsnnnfqghipveigdilpslISFNIsmnaldssipssfgnmnFLQILDlsnnqltgeipehlaVSCVNLEFLALSNnnlkghmfsrnfnltnlrSLQLEgnhlegeipqslskcssleglylnnnslsgkiprwlgnltglkhiimpenhlegpipvgfcqlyslqildisdnnisgslpscfhplsieQVHLSKNmlhgqlkrgtffhcsslvtldlsynrlngsipnwvDGLSQLSHLILghnnlegevpvQLCElnqlqlldlsnnnlhgpippcfdnttlhessnnsyslkpfetslvmdsmmipaekqIHENFEFTTKNIAYIYQGKVLSLLSgldlscnklighippqignltRIQTLNlshnnltglipstfsnlkhiESLDLSYnklngkiphqLVELKTLAVFSVAYNnlsgeipewTAQFATfnessyegntflcglplpicrspatmseasignerddnlididSFFITFTTSYVVVIFGIVIVLYVNSYWRRKWFYFVEMWITSCYYFVvdnliptrfch
Flexible Loop (DISEMBL)
MFDCKVNGLVRGQGFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEIteshsltapNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDIDSFFITFTTSYVVVIFGIVIVLYVNSYWRRKWFYFVEMWITSCYYFVVDNLIPTRFCH
Low Complexity Region (SEG)
MFDCKVNGLVRGQGFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVqlcelnqlqlldlsnnnlHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDIDSFFITFTTSYVVVIFGIVIVLYVNSYWRRKWFYFVEMWITSCYYFVVDNLIPTRFCH
Disordered region (IsUnstruct)
***CKVNGLVRGQGFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSM****LGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEI***LSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTL************FETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPA**********RDDNLIDIDSFFITFTTSYVVVIFGIVIVLYVNSYWRRKWFYFVEMWITSCYYFVVDNLIPTRFC*
Disordered Region (DISOPRED)
MFDCKVNGLVRGQGFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES********PFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG****************************DSFFITFTTSYVVVIFGIVIVLYVNSYWRRKWFYFVEMWITSCYYFVVDNLIPTRFCH
Disordered Region (DISEMBL)
MFDCKVNGLVRGQGFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDIDSFFITFTTSYVVVIFGIVIVLYVNSYWRRKWFYFVEMWITSCYYFVVDNLIPTRFCH
Disordered Region (DISPRO)
*FDCKVNGLVRGQGFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDIDSFFITFTTSYVVVIFGIVIVLYVNSYWRRKWFYFVEMWITSCYYFVVDNLIPT**C*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHoooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFDCKVNGLVRGQGFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNLIDIDSFFITFTTSYVVVIFGIVIVLYVNSYWRRKWFYFVEMWITSCYYFVVDNLIPTRFCH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	788	2.2.26 [Sep-21-2011]
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.800	0.505	0.322	7e-69
Q9FL28	1173	LRR receptor-like serine/	no	no	0.733	0.492	0.335	2e-65
Q9LHP4	1141	Receptor-like protein kin	no	no	0.743	0.513	0.314	2e-61
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.755	0.475	0.309	1e-60
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.823	0.537	0.298	7e-60
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.774	0.523	0.306	8e-60
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.823	0.537	0.298	1e-59
Q9LJF3	1164	Receptor-like protein kin	no	no	0.823	0.557	0.306	5e-59
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.730	0.503	0.303	6e-57
Q9C9H7	847	Receptor-like protein 12	no	no	0.850	0.791	0.296	5e-56

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  262 bits (670), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 235/728 (32%), Positives = 357/728 (49%), Gaps = 97/728 (13%)

Query: 70  LCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 129
           L SL++++ L I +N+L G +P  L N+ +L++L ++S +LTG I S  L  L  ++ L+
Sbjct: 139 LGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQ-LGRLVRVQSLI 197

Query: 130 LSNNHFQIPISLEPLFNHSRLKIFDAA----NNEIKAEITESHSLTAPNF---------- 175
           L +N+ + PI  E L N S L +F AA    N  I AE+    +L   N           
Sbjct: 198 LQDNYLEGPIPAE-LGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIP 256

Query: 176 -------QLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPN--W------- 219
                  QLQ LSL +    G+  PK L    +L+ + LS  N+ GE P   W       
Sbjct: 257 SQLGEMSQLQYLSLMANQLQGL-IPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLD 315

Query: 220 ---------------LLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGH 264
                          +  NNT L QL L    L+G   + +   + L+ LD+SNN+  G 
Sbjct: 316 LVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGS 375

Query: 265 IPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVN 324
           IP  + +++  L    +  N L+ ++  S  N+  LQ L L +N L G++P+ ++ +   
Sbjct: 376 IPEALFELV-ELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEIS-ALRK 433

Query: 325 LEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLS 384
           LE L L  N   G +     N T+L+ + + GNH EGEIP S+ +   L  L+L  N L 
Sbjct: 434 LEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELV 493

Query: 385 GKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPL-S 443
           G +P  LGN   L  + + +N L G IP  F  L  L+ L + +N++ G+LP     L +
Sbjct: 494 GGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRN 553

Query: 444 IEQVHLSKNMLHGQLKR--GTFFHCSSLVT--------------------LDLSYNRLNG 481
           + +++LS N L+G +    G+  + S  VT                    L L  N+L G
Sbjct: 554 LTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTG 613

Query: 482 SIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT-- 539
            IP  +  + +LS L +  N L G +P+QL    +L  +DL+NN L GPIPP     +  
Sbjct: 614 KIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQL 673

Query: 540 --LHESSNNSYSLKPFE---------TSLVMDSMMIPAEKQIHENFEFTTKNI-AYIYQG 587
             L  SSN      P E          SL  +S+     ++I         N+    + G
Sbjct: 674 GELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSG 733

Query: 588 KV------LSLLSGLDLSCNKLIGHIPPQIGNLTRIQT-LNLSHNNLTGLIPSTFSNLKH 640
            +      LS L  L LS N L G IP +IG L  +Q+ L+LS+NN TG IPST   L  
Sbjct: 734 SLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSK 793

Query: 641 IESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFL 700
           +E+LDLS+N+L G++P  + ++K+L   +V++NNL G++ +   QF+ +   S+ GNT L
Sbjct: 794 LETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLKK---QFSRWPADSFLGNTGL 850

Query: 701 CGLPLPIC 708
           CG PL  C
Sbjct: 851 CGSPLSRC 858

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  251 bits (640), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 229/682 (33%), Positives = 323/682 (47%), Gaps = 104/682 (15%)

Query: 70  LCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 129
           L  L+HLQ      N L GS+P  +  + +L  LD+S NQLTG I      +L +++ L+
Sbjct: 188 LGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRD-FGNLLNLQSLV 246

Query: 130 LSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEI-TESHSLTAPNFQLQALSLSSGYGD 188
           L+ N  +  I  E + N S L   +  +N++  +I  E  +L     QLQAL +   Y +
Sbjct: 247 LTENLLEGDIPAE-IGNCSSLVQLELYDNQLTGKIPAELGNLV----QLQALRI---YKN 298

Query: 189 GVT--FPKFLYHQHDLEDVRLSHVNMDGEFPNWL--LENNTKLRQLYLVNDSLTGPFRLP 244
            +T   P  L+    L  + LS  ++ G     +  LE+   L  L L +++ TG F   
Sbjct: 299 KLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLES---LEVLTLHSNNFTGEFPQS 355

Query: 245 IHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILD 304
           I + R L  L V  NN  G +P ++G +L +L + +   N L   IPSS  N   L++LD
Sbjct: 356 ITNLRNLTVLTVGFNNISGELPADLG-LLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLD 414

Query: 305 LSNNQLTGEIPEHLA----------------------VSCVNLEFLALSNNNLKGHMFSR 342
           LS+NQ+TGEIP                           +C NLE L++++NNL G +   
Sbjct: 415 LSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPL 474

Query: 343 NFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIM 402
              L  LR LQ+  N L G IP+ +     L  LYL++N  +G+IPR + NLT L+ + M
Sbjct: 475 IGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRM 534

Query: 403 PENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGT 462
             N LEGPIP     +  L +LD+S+N  SG +P+ F  L                    
Sbjct: 535 YSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLE------------------- 575

Query: 463 FFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQL-CELNQLQL-L 520
                SL  L L  N+ NGSIP  +  LS L+   +  N L G +P +L   L  +QL L
Sbjct: 576 -----SLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYL 630

Query: 521 DLSNNNLHGPIPPCFDNTTLHES---SNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFT 577
           + SNN L G IP       + +    SNN +S              IP   Q  +N  FT
Sbjct: 631 NFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGS------------IPRSLQACKNV-FT 677

Query: 578 TKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFS 636
                             LD S N L GHIP ++   +  I +LNLS N+ +G IP +F 
Sbjct: 678 ------------------LDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFG 719

Query: 637 NLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEG 696
           N+ H+ SLDLS N L G+IP  L  L TL    +A NNL G +PE +  F   N S   G
Sbjct: 720 NMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPE-SGVFKNINASDLMG 778

Query: 697 NTFLCGLPLPICRSPATMSEAS 718
           NT LCG   P+   P T+ + S
Sbjct: 779 NTDLCGSKKPL--KPCTIKQKS 798

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  237 bits (605), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 204/649 (31%), Positives = 318/649 (48%), Gaps = 63/649 (9%)

Query: 66  LDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSI 125
           L + L +   LQ+L I   +L G+LP  L +   L++LD+SSN L G I  S L  L ++
Sbjct: 97  LPKNLPAFRSLQKLTISGANLTGTLPESLGDCLGLKVLDLSSNGLVGDIPWS-LSKLRNL 155

Query: 126 EELMLSNNHF--QIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLS 183
           E L+L++N    +IP  +        L +FD                          +L 
Sbjct: 156 ETLILNSNQLTGKIPPDISKCSKLKSLILFD--------------------------NLL 189

Query: 184 SGYGDGVTFPKFLYHQHDLEDVRLS-HVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFR 242
           +G     + P  L     LE +R+  +  + G+ P+ +  + + L  L L   S++G   
Sbjct: 190 TG-----SIPTELGKLSGLEVIRIGGNKEISGQIPSEI-GDCSNLTVLGLAETSVSGNLP 243

Query: 243 LPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQI 302
             +   + L  L +      G IP ++G+    L+   +  N+L  SIP   G +  L+ 
Sbjct: 244 SSLGKLKKLETLSIYTTMISGEIPSDLGNC-SELVDLFLYENSLSGSIPREIGQLTKLEQ 302

Query: 303 LDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGE 362
           L L  N L G IPE +  +C NL+ + LS N L G + S    L+ L    +  N   G 
Sbjct: 303 LFLWQNSLVGGIPEEIG-NCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFSGS 361

Query: 363 IPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQ 422
           IP ++S CSSL  L L+ N +SG IP  LG LT L       N LEG IP G      LQ
Sbjct: 362 IPTTISNCSSLVQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQ 421

Query: 423 ILDISDNNISGSLPS-CFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNG 481
            LD+S N+++G++PS  F   ++ ++ L  N L G + +    +CSSLV L L +NR+ G
Sbjct: 422 ALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQ-EIGNCSSLVRLRLGFNRITG 480

Query: 482 SIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLH 541
            IP+ +  L +++ L    N L G+VP ++   ++LQ++DLSNN+L G +P    + +  
Sbjct: 481 EIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLS-- 538

Query: 542 ESSNNSYSLKPFETSLVMDSMMIPAE--KQIHENFEFTTKNIAYIYQGKV---LSLLSG- 595
                   L+  + S    S  IPA   + +  N    +KN   ++ G +   L + SG 
Sbjct: 539 -------GLQVLDVSANQFSGKIPASLGRLVSLNKLILSKN---LFSGSIPTSLGMCSGL 588

Query: 596 --LDLSCNKLIGHIPPQIGNLTRIQ-TLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 652
             LDL  N+L G IP ++G++  ++  LNLS N LTG IPS  ++L  +  LDLS+N L 
Sbjct: 589 QLLDLGSNELSGEIPSELGDIENLEIALNLSSNRLTGKIPSKIASLNKLSILDLSHNMLE 648

Query: 653 GKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 701
           G +   L  ++ L   +++YN+ SG +P+    F   +    EGN  LC
Sbjct: 649 GDL-APLANIENLVSLNISYNSFSGYLPD-NKLFRQLSPQDLEGNKKLC 695

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  235 bits (599), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 200/647 (30%), Positives = 312/647 (48%), Gaps = 52/647 (8%)

Query: 73  LMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 132
           L+ LQ L + +N+L G +P  + N TSL +   + N+L GS+ +  L  L +++ L L +
Sbjct: 191 LVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAE-LNRLKNLQTLNLGD 249

Query: 133 NHF--QIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGV 190
           N F  +IP  L  L +   ++  +   N+++  I +  +  A    LQ L LSS    GV
Sbjct: 250 NSFSGEIPSQLGDLVS---IQYLNLIGNQLQGLIPKRLTELA---NLQTLDLSSNNLTGV 303

Query: 191 TFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRW 250
              +F +  + LE + L+   + G  P  +  NNT L+QL+L    L+G     I + + 
Sbjct: 304 IHEEF-WRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQS 362

Query: 251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQL 310
           L+ LD+SNN   G IP  +  ++  L +  ++ N+L+ ++ SS  N+  LQ   L +N L
Sbjct: 363 LKLLDLSNNTLTGQIPDSLFQLV-ELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNL 421

Query: 311 TGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKC 370
            G++P+ +      LE + L  N   G M     N T L+ +   GN L GEIP S+ + 
Sbjct: 422 EGKVPKEIGF-LGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRL 480

Query: 371 SSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNN 430
             L  L+L  N L G IP  LGN   +  I + +N L G IP  F  L +L++  I +N+
Sbjct: 481 KDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNS 540

Query: 431 ISGSLPSCFHPLS-IEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDG 489
           + G+LP     L  + +++ S N  +G +        SS ++ D++ N   G IP  +  
Sbjct: 541 LQGNLPDSLINLKNLTRINFSSNKFNGSIS--PLCGSSSYLSFDVTENGFEGDIPLELGK 598

Query: 490 LSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFD--NTTLHESSNNS 547
            + L  L LG N   G +P    ++++L LLD+S N+L G IP          H   NN+
Sbjct: 599 STNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNN 658

Query: 548 YSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHI 607
           Y            S +IP                   + GK L LL  L LS NK +G +
Sbjct: 659 YL-----------SGVIPT------------------WLGK-LPLLGELKLSSNKFVGSL 688

Query: 608 PPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAV 667
           P +I +LT I TL L  N+L G IP    NL+ + +L+L  N+L+G +P  + +L  L  
Sbjct: 689 PTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFE 748

Query: 668 FSVAYNNLSGEIPEWTAQFATFNES---SYEGNTFLCGLPLPICRSP 711
             ++ N L+GEIP    Q      +   SY  N F   +P  I   P
Sbjct: 749 LRLSRNALTGEIPVEIGQLQDLQSALDLSY--NNFTGRIPSTISTLP 793

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  232 bits (592), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 225/753 (29%), Positives = 353/753 (46%), Gaps = 104/753 (13%)

Query: 48  LKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGS--LPWCLA-NMTSLRILD 104
           LK L++S + L      +L     SL   Q L +  N++ G    PW  +     L    
Sbjct: 162 LKSLNLSKNFLDPPGKEMLKGATFSL---QVLDLSYNNISGFNLFPWVSSMGFVELEFFS 218

Query: 105 VSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNH-SRLKIFDAANNEIKAE 163
           +  N+L GSI   P +   ++  L LS N+F    ++ P F   S L+  D ++N+   +
Sbjct: 219 IKGNKLAGSI---PELDFKNLSYLDLSANNFS---TVFPSFKDCSNLQHLDLSSNKFYGD 272

Query: 164 ITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLEN 223
           I  S S      +L  L+L++    G+  PK       L+ + L   +  G +PN L + 
Sbjct: 273 IGSSLSSCG---KLSFLNLTNNQFVGLV-PKL--PSESLQYLYLRGNDFQGVYPNQLADL 326

Query: 224 NTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISM 283
              + +L L  ++ +G     +     L  +D+SNNNF G +PV+    L ++ +  +S 
Sbjct: 327 CKTVVELDLSYNNFSGMVPESLGECSSLELVDISNNNFSGKLPVDTLLKLSNIKTMVLSF 386

Query: 284 NALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRN 343
           N     +P SF N+  L+ LD+S+N LTG IP  +    +N                   
Sbjct: 387 NKFVGGLPDSFSNLPKLETLDMSSNNLTGIIPSGICKDPMN------------------- 427

Query: 344 FNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMP 403
               NL+ L L+ N  +G IP SLS CS L  L L+ N L+G IP  LG+L+ LK +I+ 
Sbjct: 428 ----NLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILW 483

Query: 404 ENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTF 463
            N L G IP     L +L+ L +  N+++G +P+                        + 
Sbjct: 484 LNQLSGEIPQELMYLQALENLILDFNDLTGPIPA------------------------SL 519

Query: 464 FHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLS 523
            +C+ L  + LS N+L+G IP  +  LS L+ L LG+N++ G +P +L     L  LDL+
Sbjct: 520 SNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNCQSLIWLDLN 579

Query: 524 NNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHEN---FEF---- 576
            N L+G IPP        +S N + +L   +  + + +      K+ H      EF    
Sbjct: 580 TNFLNGSIPPPL----FKQSGNIAVALLTGKRYVYIKN---DGSKECHGAGNLLEFGGIR 632

Query: 577 -------TTK---NIAYIYQGKVLSLLSG------LDLSCNKLIGHIPPQIGNLTRIQTL 620
                  +T+   N   +Y+G      +       LDLS NKL G IP ++G +  +  L
Sbjct: 633 QEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGSIPKELGAMYYLSIL 692

Query: 621 NLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIP 680
           NL HN+L+G+IP     LK++  LDLSYN+ NG IP+ L  L  L    ++ NNLSG IP
Sbjct: 693 NLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIP 752

Query: 681 EWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEAS---IGNERDDNLIDIDSFFITF 737
           E +A F TF +  +  N+ LCG PLP+  S    S+A+     + R  +L    +  + F
Sbjct: 753 E-SAPFDTFPDYRFANNS-LCGYPLPLPCSSGPKSDANQHQKSHRRQASLAGSVAMGLLF 810

Query: 738 TTSYVVVIFGIVIVLYVNSYWRRKWFYFVEMWI 770
           +   +  IFG++IV       RRK    +E ++
Sbjct: 811 S---LFCIFGLIIVAIETKKRRRKKEAALEAYM 840

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  232 bits (592), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 213/696 (30%), Positives = 316/696 (45%), Gaps = 86/696 (12%)

Query: 37  FLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLAN 96
           +LQ++  S  S+   SM D               CS  +L  + I NN L G L +  ++
Sbjct: 126 YLQVLDLSSNSISDYSMVDYVFSK----------CS--NLVSVNISNNKLVGKLGFAPSS 173

Query: 97  MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAA 156
           + SL  +D+S N L+                        +IP S    F  S LK  D  
Sbjct: 174 LQSLTTVDLSYNILSD-----------------------KIPESFISDFPAS-LKYLDLT 209

Query: 157 NNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEF 216
           +N +  + ++       N    +LS ++  GD   FP  L +   LE + +S  N+ G+ 
Sbjct: 210 HNNLSGDFSDLSFGICGNLTFFSLSQNNLSGD--KFPITLPNCKFLETLNISRNNLAGKI 267

Query: 217 PNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSL 276
           PN                    G +     S + L+ L +++N   G IP E+  +  +L
Sbjct: 268 PN--------------------GEY---WGSFQNLKQLSLAHNRLSGEIPPELSLLCKTL 304

Query: 277 ISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLK 336
           +  ++S N     +PS F    +LQ L+L NN L+G+    +      + +L ++ NN+ 
Sbjct: 305 VILDLSGNTFSGELPSQFTACVWLQNLNLGNNYLSGDFLNTVVSKITGITYLYVAYNNIS 364

Query: 337 GHMFSRNFNLTNLRSLQLEGNHLEGEIPQ---SLSKCSSLEGLYLNNNSLSGKIPRWLGN 393
           G +     N +NLR L L  N   G +P    SL     LE + + NN LSG +P  LG 
Sbjct: 365 GSVPISLTNCSNLRVLDLSSNGFTGNVPSGFCSLQSSPVLEKILIANNYLSGTVPMELGK 424

Query: 394 LTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPS--CFHPLSIEQVHLSK 451
              LK I +  N L GPIP     L +L  L +  NN++G++P   C    ++E + L+ 
Sbjct: 425 CKSLKTIDLSFNELTGPIPKEIWMLPNLSDLVMWANNLTGTIPEGVCVKGGNLETLILNN 484

Query: 452 NMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQL 511
           N+L G +   +   C++++ + LS NRL G IP+ +  LS+L+ L LG+N+L G VP QL
Sbjct: 485 NLLTGSIPE-SISRCTNMIWISLSSNRLTGKIPSGIGNLSKLAILQLGNNSLSGNVPRQL 543

Query: 512 CELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFE-------TSLVMDSMMI 564
                L  LDL++NNL G +P    +         S S K F        T       ++
Sbjct: 544 GNCKSLIWLDLNSNNLTGDLPGELASQA-GLVMPGSVSGKQFAFVRNEGGTDCRGAGGLV 602

Query: 565 PAEKQIHENFE----FTTKNIAYIYQGKVLSLLSG------LDLSCNKLIGHIPPQIGNL 614
             E    E  E      +     IY G  +   S        D+S N + G IPP  GN+
Sbjct: 603 EFEGIRAERLERLPMVHSCPATRIYSGMTMYTFSANGSMIYFDISYNAVSGFIPPGYGNM 662

Query: 615 TRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNN 674
             +Q LNL HN +TG IP +F  LK I  LDLS+N L G +P  L  L  L+   V+ NN
Sbjct: 663 GYLQVLNLGHNRITGTIPDSFGGLKAIGVLDLSHNNLQGYLPGSLGSLSFLSDLDVSNNN 722

Query: 675 LSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRS 710
           L+G IP +  Q  TF  S Y  N+ LCG+PL  C S
Sbjct: 723 LTGPIP-FGGQLTTFPVSRYANNSGLCGVPLRPCGS 757

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  231 bits (590), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 225/753 (29%), Positives = 352/753 (46%), Gaps = 104/753 (13%)

Query: 48  LKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGS--LPWCLA-NMTSLRILD 104
           LK L++S + L      +L     SL   Q L +  N++ G    PW  +     L    
Sbjct: 162 LKSLNLSKNFLDPPGKEMLKAATFSL---QVLDLSYNNISGFNLFPWVSSMGFVELEFFS 218

Query: 105 VSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNH-SRLKIFDAANNEIKAE 163
           +  N+L GSI   P +   ++  L LS N+F    ++ P F   S L+  D ++N+   +
Sbjct: 219 LKGNKLAGSI---PELDFKNLSYLDLSANNFS---TVFPSFKDCSNLQHLDLSSNKFYGD 272

Query: 164 ITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLEN 223
           I  S S      +L  L+L++    G+  PK       L+ + L   +  G +PN L + 
Sbjct: 273 IGSSLSSCG---KLSFLNLTNNQFVGLV-PKL--PSESLQYLYLRGNDFQGVYPNQLADL 326

Query: 224 NTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISM 283
              + +L L  ++ +G     +     L  +D+S NNF G +PV+    L ++ +  +S 
Sbjct: 327 CKTVVELDLSYNNFSGMVPESLGECSSLELVDISYNNFSGKLPVDTLSKLSNIKTMVLSF 386

Query: 284 NALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRN 343
           N     +P SF N+  L+ LD+S+N LTG IP  +    +N                   
Sbjct: 387 NKFVGGLPDSFSNLLKLETLDMSSNNLTGVIPSGICKDPMN------------------- 427

Query: 344 FNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMP 403
               NL+ L L+ N  +G IP SLS CS L  L L+ N L+G IP  LG+L+ LK +I+ 
Sbjct: 428 ----NLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILW 483

Query: 404 ENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTF 463
            N L G IP     L +L+ L +  N+++G +P+                        + 
Sbjct: 484 LNQLSGEIPQELMYLQALENLILDFNDLTGPIPA------------------------SL 519

Query: 464 FHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLS 523
            +C+ L  + LS N+L+G IP  +  LS L+ L LG+N++ G +P +L     L  LDL+
Sbjct: 520 SNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNCQSLIWLDLN 579

Query: 524 NNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHEN---FEF---- 576
            N L+G IPP        +S N + +L   +  + + +      K+ H      EF    
Sbjct: 580 TNFLNGSIPPPL----FKQSGNIAVALLTGKRYVYIKN---DGSKECHGAGNLLEFGGIR 632

Query: 577 -------TTK---NIAYIYQGKVLSLLSG------LDLSCNKLIGHIPPQIGNLTRIQTL 620
                  +T+   N   +Y+G      +       LDLS NKL G IP ++G +  +  L
Sbjct: 633 QEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGSIPKELGAMYYLSIL 692

Query: 621 NLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIP 680
           NL HN+L+G+IP     LK++  LDLSYN+ NG IP+ L  L  L    ++ NNLSG IP
Sbjct: 693 NLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIP 752

Query: 681 EWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEAS---IGNERDDNLIDIDSFFITF 737
           E +A F TF +  +  N+ LCG PLPI  S    S+A+     + R  +L    +  + F
Sbjct: 753 E-SAPFDTFPDYRFANNS-LCGYPLPIPCSSGPKSDANQHQKSHRRQASLAGSVAMGLLF 810

Query: 738 TTSYVVVIFGIVIVLYVNSYWRRKWFYFVEMWI 770
           +   +  IFG++IV       RRK    +E ++
Sbjct: 811 S---LFCIFGLIIVAIETKKRRRKKEAALEAYM 840

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score =  229 bits (585), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 218/712 (30%), Positives = 329/712 (46%), Gaps = 63/712 (8%)

Query: 76  LQELYIDNNDLRGS--LPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNN 133
           L+ L + +N L  S  + +  +   +L  ++ S N+L G + SSP      I  + LSNN
Sbjct: 126 LEVLDLSSNSLTDSSIVDYVFSTCLNLVSVNFSHNKLAGKLKSSPSASNKRITTVDLSNN 185

Query: 134 HF--QIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVT 191
            F  +IP +    F +S LK  D + N +  + +        N  + +LS +S  GD   
Sbjct: 186 RFSDEIPETFIADFPNS-LKHLDLSGNNVTGDFSRLSFGLCENLTVFSLSQNSISGD--R 242

Query: 192 FPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWL 251
           FP  L +   LE + LS  ++ G+ P                 D   G F       + L
Sbjct: 243 FPVSLSNCKLLETLNLSRNSLIGKIP----------------GDDYWGNF-------QNL 279

Query: 252 RFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLT 311
           R L +++N + G IP E+  +  +L   ++S N+L   +P SF +   LQ L+L NN+L+
Sbjct: 280 RQLSLAHNLYSGEIPPELSLLCRTLEVLDLSGNSLTGQLPQSFTSCGSLQSLNLGNNKLS 339

Query: 312 GEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQ---SLS 368
           G+    +      +  L L  NN+ G +     N +NLR L L  N   GE+P    SL 
Sbjct: 340 GDFLSTVVSKLSRITNLYLPFNNISGSVPISLTNCSNLRVLDLSSNEFTGEVPSGFCSLQ 399

Query: 369 KCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISD 428
             S LE L + NN LSG +P  LG    LK I +  N L G IP     L  L  L +  
Sbjct: 400 SSSVLEKLLIANNYLSGTVPVELGKCKSLKTIDLSFNALTGLIPKEIWTLPKLSDLVMWA 459

Query: 429 NNISGSLPS--CFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNW 486
           NN++G +P   C    ++E + L+ N+L G L   +   C++++ + LS N L G IP  
Sbjct: 460 NNLTGGIPESICVDGGNLETLILNNNLLTGSLPE-SISKCTNMLWISLSSNLLTGEIPVG 518

Query: 487 VDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIP-----------PCF 535
           +  L +L+ L LG+N+L G +P +L     L  LDL++NNL G +P           P  
Sbjct: 519 IGKLEKLAILQLGNNSLTGNIPSELGNCKNLIWLDLNSNNLTGNLPGELASQAGLVMPGS 578

Query: 536 DNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSG 595
            +        N           +++   I AE+  H     +      IY G  + + S 
Sbjct: 579 VSGKQFAFVRNEGGTDCRGAGGLVEFEGIRAERLEHFPMVHSCPK-TRIYSGMTMYMFSS 637

Query: 596 ------LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 649
                 LDLS N + G IP   G +  +Q LNL HN LTG IP +F  LK I  LDLS+N
Sbjct: 638 NGSMIYLDLSYNAVSGSIPLGYGAMGYLQVLNLGHNLLTGTIPDSFGGLKAIGVLDLSHN 697

Query: 650 KLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICR 709
            L G +P  L  L  L+   V+ NNL+G IP +  Q  TF  + Y  N+ LCG+PLP C 
Sbjct: 698 DLQGFLPGSLGGLSFLSDLDVSNNNLTGPIP-FGGQLTTFPLTRYANNSGLCGVPLPPCS 756

Query: 710 SPATMSEASIGNERDDNLIDIDSFFITFTTSYVVVIFGIVIVLYVNSYWRRK 761
           S +  + +    ++            T  ++ +V  F  +++L +  Y  RK
Sbjct: 757 SGSRPTRSHAHPKKQS--------IATGMSAGIVFSFMCIVMLIMALYRARK 800

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  223 bits (567), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 200/659 (30%), Positives = 304/659 (46%), Gaps = 83/659 (12%)

Query: 86  LRGSLPW-CLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPIS--LE 142
           L G+LP    +  ++L  + +S N  TG + +   +    ++ L LS N+   PIS    
Sbjct: 139 LIGTLPENFFSKYSNLISITLSYNNFTGKLPNDLFLSSKKLQTLDLSYNNITGPISGLTI 198

Query: 143 PLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDL 202
           PL +   +   D + N I   I++S  +   N  L++L+LS    DG   PK       L
Sbjct: 199 PLSSCVSMTYLDFSGNSISGYISDSL-INCTN--LKSLNLSYNNFDG-QIPKSFGELKLL 254

Query: 203 EDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQ 262
           + + LSH  + G  P  + +    L+ L L  ++ TG     + S  WL+ LD+SNNN  
Sbjct: 255 QSLDLSHNRLTGWIPPEIGDTCRSLQNLRLSYNNFTGVIPESLSSCSWLQSLDLSNNNIS 314

Query: 263 GHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSC 322
           G  P  I     SL    +S N +    P+S      L+I D S+N+ +G IP  L    
Sbjct: 315 GPFPNTILRSFGSLQILLLSNNLISGDFPTSISACKSLRIADFSSNRFSGVIPPDLCPGA 374

Query: 323 VNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNS 382
            +LE                         L+L  N + GEIP ++S+CS L  + L+ N 
Sbjct: 375 ASLE------------------------ELRLPDNLVTGEIPPAISQCSELRTIDLSLNY 410

Query: 383 LSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPL 442
           L+G IP  +GNL  L+  I   N++ G IP    +L +L+ L +++N ++G +P  F   
Sbjct: 411 LNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEIPPEF--- 467

Query: 443 SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNN 502
                                F+CS++  +  + NRL G +P     LS+L+ L LG+NN
Sbjct: 468 ---------------------FNCSNIEWVSFTSNRLTGEVPKDFGILSRLAVLQLGNNN 506

Query: 503 LEGEVPVQLCELNQLQLLDLSNNNLHGPIPP-------------CFDNTTLHESSNNSYS 549
             GE+P +L +   L  LDL+ N+L G IPP                  T+    N   S
Sbjct: 507 FTGEIPPELGKCTTLVWLDLNTNHLTGEIPPRLGRQPGSKALSGLLSGNTMAFVRNVGNS 566

Query: 550 LKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSG------LDLSCNKL 603
            K     LV  S + P  +++ +     + +   +Y G +LSL +       LDLS N+L
Sbjct: 567 CKGV-GGLVEFSGIRP--ERLLQIPSLKSCDFTRMYSGPILSLFTRYQTIEYLDLSYNQL 623

Query: 604 IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK 663
            G IP +IG +  +Q L LSHN L+G IP T   LK++   D S N+L G+IP     L 
Sbjct: 624 RGKIPDEIGEMIALQVLELSHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQIPESFSNLS 683

Query: 664 TLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRS-----PATMSEA 717
            L    ++ N L+G IP+   Q +T   + Y  N  LCG+PLP C++     PA   E 
Sbjct: 684 FLVQIDLSNNELTGPIPQ-RGQLSTLPATQYANNPGLCGVPLPECKNGNNQLPAGTEEG 741

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  219 bits (559), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 227/765 (29%), Positives = 355/765 (46%), Gaps = 95/765 (12%)

Query: 58  LGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSS 117
           L TNSS      L  L +L+ L + N +L G +P  L N++ L ++++  N+  G I +S
Sbjct: 100 LKTNSS------LFKLQYLRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPAS 153

Query: 118 PLVHLTSIEELMLSNNHF--QIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNF 175
            + +L  +  L+L+NN    +IP SL    N SRL   +  +N +  +I +S        
Sbjct: 154 -IGNLNQLRHLILANNVLTGEIPSSLG---NLSRLVNLELFSNRLVGKIPDS---IGDLK 206

Query: 176 QLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVND 235
           QL+ LSL+S    G   P  L +  +L  + L+H  + GE P   + N  +LR +   N+
Sbjct: 207 QLRNLSLASNNLIG-EIPSSLGNLSNLVHLVLTHNQLVGEVPA-SIGNLIELRVMSFENN 264

Query: 236 SLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFG 295
           SL+G   +   +   L    +S+NNF    P ++  I  +L  F++S N+     P S  
Sbjct: 265 SLSGNIPISFANLTKLSIFVLSSNNFTSTFPFDMS-IFHNLEYFDVSYNSFSGPFPKSLL 323

Query: 296 NMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLE 355
            +  L+ + L  NQ TG I      S   L+ L L  N L G +      L NL  L + 
Sbjct: 324 LIPSLESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESISRLLNLEELDIS 383

Query: 356 GNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPR--WLGNLTGLKH-------------- 399
            N+  G IP ++SK  +L  L L+ N+L G++P   W  N   L H              
Sbjct: 384 HNNFTGAIPPTISKLVNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSFENTSQEEA 443

Query: 400 ----IIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLS--IEQVHLSKNM 453
               + +  N  +GPIP   C+L SL  LD+S+N  SGS+PSC    S  I++++L  N 
Sbjct: 444 LIEELDLNSNSFQGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNN 503

Query: 454 LHGQLKRGTFFHCSSLVTLDLSYNRLNGSIP------------------------NWVDG 489
             G L    F   + LV+LD+S+N+L G  P                        +W++ 
Sbjct: 504 FSGTLP-DIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLES 562

Query: 490 LSQLSHLILGHNNLEGEVPVQLCEL--NQLQLLDLSNNNLHGPIPPCF-----DNTTLHE 542
           L  L  L L  N   G +  +   +    L+++D+S+NN  G +PP +     D TTL E
Sbjct: 563 LPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTE 622

Query: 543 SSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNK 602
                      E    M      A+   HE  E   K +   ++ ++      +D S NK
Sbjct: 623 -----------EMDQYMTEFWRYADSYYHE-MEMVNKGVDMSFE-RIRRDFRAIDFSGNK 669

Query: 603 LIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL 662
           + G+IP  +G L  ++ LNLS N  T +IP   +NL  +E+LD+S NKL+G+IP  L  L
Sbjct: 670 INGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAAL 729

Query: 663 KTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASI--- 719
             L+  + ++N L G +P  T QF     SS+  N  L GL   ICR    ++  S    
Sbjct: 730 SFLSYMNFSHNLLQGPVPRGT-QFQRQKCSSFLDNPGLYGLE-DICRDTGALNPTSQLPE 787

Query: 720 -GNERDDNLIDIDSFFITFTTSYVVVIFGIVIVLYVNSYWRRKWF 763
             +E ++N+ +  +  I +      V+ G+VI  +  S+   +WF
Sbjct: 788 DLSEAEENMFNWVAAAIAYGPG---VLCGLVIGHFYTSH-NHEWF 828

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	788
255581263	912	serine-threonine protein kinase, plant-t	0.941	0.813	0.513	0.0
224142481	781	predicted protein [Populus trichocarpa]	0.951	0.960	0.471	1e-177
224134891	953	predicted protein [Populus trichocarpa]	0.965	0.798	0.456	1e-171
224073436	1014	predicted protein [Populus trichocarpa]	0.942	0.732	0.466	1e-171
224123984	1016	predicted protein [Populus trichocarpa]	0.956	0.742	0.452	1e-169
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.964	0.519	0.457	1e-168
224073382	1309	predicted protein [Populus trichocarpa]	0.893	0.537	0.476	1e-166
224073422	969	predicted protein [Populus trichocarpa]	0.927	0.754	0.467	1e-163
224073452	710	predicted protein [Populus trichocarpa]	0.857	0.952	0.475	1e-160
224098008	1097	predicted protein [Populus trichocarpa]	0.903	0.649	0.460	1e-158

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/765 (51%), Positives = 513/765 (67%), Gaps = 23/765 (3%)

Query: 10  VRGQGFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQG 69
           ++ Q  P+F++L+  ++   +  L  SFLQ +   M SLK LS+S   L      +  QG
Sbjct: 168 IQAQDLPNFENLE--ELYLDKIELENSFLQTVG-VMTSLKVLSLSGCGLTGALPNV--QG 222

Query: 70  LCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 129
           LC L+HL+ L + +N+  G LPWCL+N+TSL++LD+SSNQ  G IS+SPL  L S+ +L 
Sbjct: 223 LCELIHLRVLDVSSNEFHGILPWCLSNLTSLQLLDLSSNQFVGDISNSPLKILKSLVDLD 282

Query: 130 LSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDG 189
           +SNNHFQ+P SL P FNHS LK     NN I  E  E HS  AP FQL ++ + SGYG  
Sbjct: 283 VSNNHFQVPFSLGPFFNHSNLKHIRGQNNAIYLE-AELHS--APRFQLISI-IFSGYGIC 338

Query: 190 VTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHR 249
            TFP FLYHQ++L+ V LSH+++ GEFPNWLL NNT+L  L LVN+SL+G  +LP+H H 
Sbjct: 339 GTFPNFLYHQNNLQFVDLSHLSLKGEFPNWLLTNNTRLEILDLVNNSLSGHLQLPLHPHV 398

Query: 250 WLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQ 309
            L  LD+SNN+   HIP+EIG  LP L   N+S N  D SIPSSFGNMN L+ILDLSNNQ
Sbjct: 399 NLLALDISNNHVHDHIPLEIGTFLPKLELLNMSSNGFDGSIPSSFGNMNSLRILDLSNNQ 458

Query: 310 LTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSK 369
           L+G IPEHLA  C +L  L LSNN+L+G MFS+ FNLTNL  L+L+ NH  G IP+SLSK
Sbjct: 459 LSGSIPEHLATGCFSLNTLILSNNSLQGQMFSKQFNLTNLWWLELDKNHFSGRIPKSLSK 518

Query: 370 CSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDN 429
            S+L  + L++N LSG IP W+GNL+ L+++I+  N L+GPIPV FCQL+ L++LD+++N
Sbjct: 519 -SALSIMDLSDNHLSGMIPGWIGNLSYLQNLILSNNRLKGPIPVEFCQLHYLEVLDLANN 577

Query: 430 NISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDG 489
           ++SG LPSC  P SI  VHLS+NM+ G      F     LVTLDLS NR+ G IP  + G
Sbjct: 578 SVSGILPSCLSPSSIIHVHLSQNMIEGPWTNA-FSGSHFLVTLDLSSNRITGRIPTLIGG 636

Query: 490 LSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYS 549
           ++ L  L L  N  +GE+P Q+C L QL L+ L++NNL G IP C     L    ++S +
Sbjct: 637 INALRILNLKSNRFDGEIPAQICGLYQLSLIVLADNNLSGSIPSC-----LQLDQSDSLA 691

Query: 550 LKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPP 609
                    ++   +P          FTTK  +Y YQGK+LS +SG+D SCNKL G IPP
Sbjct: 692 PDVPPVPNPLNPYYLPVRPMY-----FTTKRRSYSYQGKILSYISGIDFSCNKLTGEIPP 746

Query: 610 QIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFS 669
           ++GN + I +LNLS+N  TG IPSTFSNLK IESLDLSYN LNG IP QL+ELK L+ FS
Sbjct: 747 EMGNHSAIYSLNLSYNRFTGPIPSTFSNLKQIESLDLSYNNLNGDIPSQLLELKFLSYFS 806

Query: 670 VAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNERDD--NL 727
           VA+NNL G+ P+ T QFATF  SSYEGN  LCGLPLP   +    S A   +  D+  N 
Sbjct: 807 VAHNNLFGKTPKRTGQFATFEVSSYEGNPNLCGLPLPKSCTEREASSAPRASAMDEESNF 866

Query: 728 IDIDSFFITFTTSYVVVIFGIVIVLYVNSYWRRKWFYFVEMWITS 772
           +D+++F+ +F  SY  VI G+ +VLY+N  WRR WF FV++ I+S
Sbjct: 867 LDMNTFYGSFIVSYTFVIIGMFLVLYINPQWRRAWFDFVDICISS 911

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa]

 Score =  629 bits (1622), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 375/796 (47%), Positives = 506/796 (63%), Gaps = 46/796 (5%)

Query: 5   KVNGLVRGQGFPHFKSLDHLDMV-FARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSS 63
           ++       GF     L+ L+++  +   +N S L  + E + SLK+L++ ++ L     
Sbjct: 11  EIQNFATSTGFERSLRLNKLEILELSFNKINDSTLSFL-EGLSSLKHLNLDNNQL---KG 66

Query: 64  RILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLT 123
            I  +GLC L  LQEL I  NDL G LP CL N+ +L++LD+S N  +G+IS S +  LT
Sbjct: 67  SIDMKGLCELKQLQELDISYNDLNG-LPSCLTNLNNLQVLDISFNNFSGNISLSRIGSLT 125

Query: 124 SIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLS 183
           SI +L LS+NHFQIPISL P FN S LK  +  +NEI       H+L  P FQLQ LSL+
Sbjct: 126 SIRDLKLSDNHFQIPISLGPFFNLSNLKNLNGDHNEIYESTELVHNLI-PRFQLQRLSLA 184

Query: 184 SGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRL 243
             +G G TFPKFLY+QHDL+ V LSH+ + GEFP+WLL+NNTKL  LYLVN SL+G  +L
Sbjct: 185 C-HGFGGTFPKFLYYQHDLQFVDLSHIKIIGEFPSWLLQNNTKLEALYLVNSSLSGSLQL 243

Query: 244 PIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQIL 303
           P  SH  L  LD+S N+ Q  IP +IG   P L   N+S N    SIPSS  NM+ L +L
Sbjct: 244 PNDSHVNLSRLDISRNHIQNQIPTKIGAYFPWLEFLNLSRNYFSGSIPSSISNMSSLGVL 303

Query: 304 DLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEI 363
           DLSNN L+G IPE L   C++L  L LSNN+LKG  F R+FNL  L  L L GN L G +
Sbjct: 304 DLSNNGLSGNIPEQLVEGCLSLRGLVLSNNHLKGQFFWRSFNLAYLTDLILSGNQLTGIL 363

Query: 364 PQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQI 423
           P SLS  S LE L ++ N+LSGKIPRW+G ++ L+++ + EN+L G +P  FC       
Sbjct: 364 PNSLSNGSRLEALDVSLNNLSGKIPRWIGYMSSLQYLDLSENNLYGSLPSSFCS------ 417

Query: 424 LDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSI 483
                              ++ +V+LSKN L G L  G    C SL  LDLS+N   G I
Sbjct: 418 -----------------SRTMTEVYLSKNKLEGSLI-GALDGCLSLNRLDLSHNYFGGGI 459

Query: 484 PNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES 543
           P  +  L +LS L+LG+NNLEG++P QLC+L +L L+DLS+N+L G I PC   T+  + 
Sbjct: 460 PESIGSLLELSFLLLGYNNLEGKIPSQLCKLEKLSLIDLSHNHLFGHILPCLQPTSKWQR 519

Query: 544 SNNSYSLKPFETSLVMDS------MMIPA--EKQIHENFEFTTKNIAYIYQGKVLSLLSG 595
              + SL P   SL  ++        +PA  +  ++++ EFTTK+I+Y ++G +L  +SG
Sbjct: 520 ERET-SLNPSGNSLGRENRGPQIVFPVPAVEDPSMNKSVEFTTKSISYSFKGIILKYISG 578

Query: 596 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 655
           +DLSCN L G IP ++GNL+ IQ LNLSHN+LTG IP TFSNLK IESLDLSYN LNG+I
Sbjct: 579 IDLSCNNLTGEIPVELGNLSNIQVLNLSHNSLTGPIPPTFSNLKEIESLDLSYNNLNGEI 638

Query: 656 PHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP--ICRS--P 711
           P QL++L  L+ FSVA+NNLSG+ PE  AQF+TFN+S YEGN  LCG PL     R+  P
Sbjct: 639 PRQLLDLNFLSAFSVAHNNLSGKTPEMVAQFSTFNKSCYEGNPLLCGPPLARNCTRALPP 698

Query: 712 ATMSEASIGNERDDNLIDIDSFFITFTTSYVVVIFGIVIVLYVNSYWRRKWFYFVEMWIT 771
           + +  +    + ++ +ID+++F +TF+ +Y++V+  I  VLY+N  WRR WFYF+   I 
Sbjct: 699 SPLPRSQTHKKEENGVIDMEAFIVTFSVAYIMVLLTIGSVLYINPRWRRAWFYFIGESIN 758

Query: 772 SCYYFVVDNL-IPTRF 786
           +CYYF+VDNL +P RF
Sbjct: 759 NCYYFLVDNLPVPARF 774

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134891|ref|XP_002327515.1| predicted protein [Populus trichocarpa] gi|222836069|gb|EEE74490.1| predicted protein [Populus trichocarpa]

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 366/802 (45%), Positives = 479/802 (59%), Gaps = 41/802 (5%)

Query: 3   DCKVNGLVRGQGFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTL-GTN 61
           D   NGL  G G   F S    ++    T+L  +FLQ I  ++P+LK LS+++  L GT 
Sbjct: 156 DLSANGLTAGSG-TFFNSSTLEELYLDNTSLRINFLQNIG-ALPALKVLSVAECDLHGT- 212

Query: 62  SSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVH 121
              +  QG C L +L++L +  N+  GSLP CL N++SL++LDVS NQ TG+ +S PL +
Sbjct: 213 ---LPAQGWCELKNLKQLDLARNNFGGSLPDCLGNLSSLQLLDVSENQFTGNFTSGPLTN 269

Query: 122 LTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALS 181
           L S+E L+LSNN F++PIS++P  NHS LK F + NN +  E     +L  P FQL    
Sbjct: 270 LISLEFLLLSNNLFEVPISMKPFLNHSSLKFFSSENNRLVTEPVAFDNLI-PKFQLVFFR 328

Query: 182 LSSGYGDGV--TFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTG 239
           LSS          P FLY+Q DL  + LSH N+ G FP+WLL+NNT+L QLYL  +   G
Sbjct: 329 LSSSPTSEALNVIPDFLYYQLDLRALDLSHNNITGMFPSWLLKNNTRLEQLYLSANFFVG 388

Query: 240 PFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNF 299
             +L  H +  +  LD+SNNN  G I  +I  I P+L +  ++ N     IPS  GN++ 
Sbjct: 389 TLQLQDHPYSNMVELDISNNNMSGQISKDICLIFPNLWTLRMAKNGFTGCIPSCLGNISS 448

Query: 300 LQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHL 359
           L  LDLSNNQL+    E L +       L LSNN+L G + +  FN +  + L L GN+ 
Sbjct: 449 LLFLDLSNNQLSTVQLEQLTIPV-----LKLSNNSLGGQIPTSVFNSSTSQFLYLNGNNF 503

Query: 360 EGEIPQ-SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQL 418
            G+I    L     L  L L+NN  SG +PR   N T L+ + + +NH +GPIP  FC+L
Sbjct: 504 SGQISDFPLYGWKELNVLDLSNNQFSGMLPRIFVNFTDLRVLDLSKNHYKGPIPKDFCKL 563

Query: 419 YSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNR 478
             LQ LD+S+NN+SG +PSCF P  +  VHLSKN L G L  G FF+ S LVT+DL  N 
Sbjct: 564 GRLQYLDLSENNLSGYIPSCFSPPPLTHVHLSKNRLSGPLTYG-FFNSSYLVTMDLRDNS 622

Query: 479 LNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNT 538
           L GSIPNW+   S LS L+L  N+ +GE+PVQLC L QL +LD+S N L GP+P C  N 
Sbjct: 623 LTGSIPNWIGNHSSLSVLLLRANHFDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLGNL 682

Query: 539 TLHESSNNSYSLKPFETSLVMDSMMIPAEKQI--------------------HENFEFTT 578
           T  ESS  +        S+V++SM     K +                     E  EF T
Sbjct: 683 TFKESSQKAR--MDLGASIVLESMEKAYYKTMGPPLVDSVYLLGKDFRLNFTEEVIEFRT 740

Query: 579 KNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNL 638
           KN+ Y Y+G +LS +SG+DLS N   G IP + GNL+ I++LNLSHNN T  IP+TFSNL
Sbjct: 741 KNMYYGYKGNILSYMSGIDLSNNNFGGAIPQEFGNLSEIRSLNLSHNNPTESIPATFSNL 800

Query: 639 KHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNT 698
           K IESLDLSYN LNG IP QL E+ TL VFSVA+NNLSG  PE   QF TF+ES YEGN 
Sbjct: 801 KQIESLDLSYNNLNGVIPPQLTEITTLEVFSVAHNNLSGWTPERKYQFGTFDESCYEGNP 860

Query: 699 FLCGLPLP-ICRSPATMSEASIGNERDD-NLIDIDSFFITFTTSYVVVIFGIVIVLYVNS 756
           FLCG PL   C      S+    +E+ D   ID++ F+I+F   Y VV+  I  VLY+N 
Sbjct: 861 FLCGPPLRNNCSVEPVSSQPVPDDEQGDVGFIDMEFFYISFGVCYTVVVMTIAAVLYINP 920

Query: 757 YWRRKWFYFVEMWITSCYYFVV 778
           YWRR+W YF+E  I +CYYF+V
Sbjct: 921 YWRRRWLYFIEDCIDTCYYFMV 942

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073436|ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|222841527|gb|EEE79074.1| predicted protein [Populus trichocarpa]

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 367/787 (46%), Positives = 487/787 (61%), Gaps = 44/787 (5%)

Query: 25   DMVFARTALNTSFLQIIRESMPSLKYLSMSDSTL-GTNSSRILDQGLCSLMHLQELYIDN 83
            ++   RT+L  +FLQ I  ++P LK LS+++  L GT    +  QG C L +L++L +  
Sbjct: 228  ELYLDRTSLPINFLQNIG-ALPDLKVLSVAECDLHGT----LPAQGWCELKNLRQLDLSG 282

Query: 84   NDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEP 143
            N+L GSLP CL N++SL++LDVS NQ TG+I+S PL +LTS+E L LSNN F++PIS++P
Sbjct: 283  NNLGGSLPDCLGNLSSLQLLDVSENQFTGNIASGPLTNLTSLEFLSLSNNLFEVPISMKP 342

Query: 144  LFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLS-SGYGDGVTFPKFLYHQHDL 202
              NHS LK F + NN++  E     +L  P FQL    LS +     V  P FLY+Q+D+
Sbjct: 343  FMNHSSLKFFSSENNKLVTEPAAFDNLI-PKFQLVFFRLSKTTEALNVKIPDFLYYQYDI 401

Query: 203  EDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQ 262
              + LSH N+   FP+WLL+NNT+L QLYL N+S  G  +L  H +  +  LD+SNNN  
Sbjct: 402  RVLDLSHNNITAMFPSWLLKNNTRLEQLYLSNNSFVGTLQLQDHPYLNMTELDISNNNMN 461

Query: 263  GHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSC 322
            G IP +I  I P++ S  ++ N     IPS  GN++ L+ILDLSNNQL+    E L    
Sbjct: 462  GQIPKDICLIFPNMWSLRMANNGFTGCIPSCLGNISSLKILDLSNNQLSIVKLEQLTT-- 519

Query: 323  VNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSL-EGLYLNNN 381
              + FL LSNNNL G + +  FN + L  L L GN+  G+I   L     +   L L++N
Sbjct: 520  --IWFLKLSNNNLGGQLPTSVFNSSTLEYLYLHGNNFWGQISDFLLYGWKMWSTLDLSDN 577

Query: 382  SLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHP 441
              SG +PRWL N TGL  I + +N+ +GPI   FC+L  L+ LD+S+NN+SG +PSCF P
Sbjct: 578  QFSGMLPRWLVNSTGLIAIDLSKNYFKGPILRDFCKLNQLEYLDLSENNLSGYIPSCFSP 637

Query: 442  LSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHN 501
              I  VHLS+N L G L  G F++ SSLVT+DL  N   GS PNW+  LS LS L+L  N
Sbjct: 638  PQITHVHLSENRLSGPLTYG-FYNNSSLVTMDLRDNNFTGSFPNWIGNLSSLSVLLLRAN 696

Query: 502  NLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYS------LKPFET 555
            + +GE+PVQLC L QL +LD+S N L GP+P C  N T  ESS  + +      L     
Sbjct: 697  HFDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLGNLTFKESSQKTLADLGADVLSRSIE 756

Query: 556  SLVMDSMMIPAEKQIH------------ENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKL 603
                ++M  P  + ++            E  EFTTKN+ Y Y+GK LS +SG+DLS N  
Sbjct: 757  KAYYETMGPPLVESMYNLRKGFLLNFTEEVIEFTTKNMYYRYKGKTLSYMSGIDLSNNNF 816

Query: 604  IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK 663
            +G IPP+ G+L++I +LNLSHNNLTG IP+TFSNLK IESLDLSYN LNG IP QL ++ 
Sbjct: 817  VGAIPPEFGDLSKILSLNLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGVIPPQLTDIT 876

Query: 664  TLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL------------PICRSP 711
            TL VFSVA+NNLSG  PE   QF TF+ES YEGN FLCG PL            P+   P
Sbjct: 877  TLEVFSVAHNNLSGNTPERKYQFGTFDESCYEGNPFLCGPPLRNNCSEEAVPSQPVPSQP 936

Query: 712  ATMSEASIGNERDDNLIDIDSFFITFTTSYVVVIFGIVIVLYVNSYWRRKWFYFVEMWIT 771
                      + DD  ID++ F+I F   Y VV+  IV+VLY++ YWRR+W YF+E  I 
Sbjct: 937  VPSQPVPYDEQGDDGFIDMEFFYINFGVCYTVVVMIIVVVLYIDPYWRRRWSYFIEDCID 996

Query: 772  SCYYFVV 778
            +CYYFVV
Sbjct: 997  TCYYFVV 1003

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123984|ref|XP_002330258.1| predicted protein [Populus trichocarpa] gi|222871714|gb|EEF08845.1| predicted protein [Populus trichocarpa]

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 364/805 (45%), Positives = 482/805 (59%), Gaps = 51/805 (6%)

Query: 14   GFPHFKSLD-HLDMVFARTALNTSFLQ--IIRE-----------------SMPSLKYLSM 53
            GF   KSLD   +M+   T++N +F     + E                  +P+LK LS 
Sbjct: 212  GFSSLKSLDLSYNMLTGSTSINGTFFNSTTLEELYLDGSSLPLNFLHNIGVLPALKVLSA 271

Query: 54   SDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGS 113
             +  L   +  +  QGLC L +L++L++  N+L GSLP C  N++SL++LDVS NQ  G+
Sbjct: 272  GECDL---NGTLPAQGLCGLKNLEQLFLSENNLEGSLPDCFKNLSSLQLLDVSRNQFIGN 328

Query: 114  ISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAP 173
            I+SSPL +L S+E + LSNNHFQ+PIS++P  NHS L+ F + NN +  E    H L  P
Sbjct: 329  IASSPLTNLLSLEFISLSNNHFQVPISMKPFMNHSSLRFFSSDNNRLVTEPMSFHDLI-P 387

Query: 174  NFQLQALSLSSGYGDG--VTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLY 231
             FQL   SLS    +   V  P FLY+QHDL  + LS  +  G FP+WLL+NNT+L QL+
Sbjct: 388  KFQLVFFSLSKSSSEALNVETPSFLYNQHDLRVLDLSQNSFIGMFPSWLLKNNTRLEQLF 447

Query: 232  LVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIP 291
            L  +S  G  +L  H +  +  +D+SNNN  G IP  I  I  +L +  ++ N L   IP
Sbjct: 448  LNENSFFGTLQLQDHPNPDMTAIDISNNNMHGEIPKNICLIFSNLWTLRMAKNGLTGCIP 507

Query: 292  SSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRS 351
            S  GN + L +LDLSNNQL+    E      + L FL LSNNNL G + +   N + L  
Sbjct: 508  SCLGNSSSLGVLDLSNNQLSMVELEQF----ITLTFLKLSNNNLGGQLPASMVNSSRLNY 563

Query: 352  LQLEGNHLEGEIPQSLSKCSSL-EGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGP 410
            L L  N+  G+I    S   ++   L L+NN  SG +PRW  NLT +  I + +NH  GP
Sbjct: 564  LYLSDNNFWGQISDFPSPIKTIWPVLDLSNNQFSGMLPRWFVNLTQIFAIDLSKNHFNGP 623

Query: 411  IPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLV 470
            IPV FC+L  L+ LD+SDNN+  S+PSCF+P  I  VHLSKN L G L  G F++ SSLV
Sbjct: 624  IPVEFCKLDELKYLDLSDNNLFDSIPSCFNPPHITHVHLSKNRLSGPLTYG-FYNSSSLV 682

Query: 471  TLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGP 530
            TLDL  N   GSI NW+  LS LS L+L  NN +GE  VQLC L QL +LD+S N L GP
Sbjct: 683  TLDLRDNNFTGSISNWIGNLSSLSVLLLRANNFDGEFLVQLCLLEQLSILDVSQNQLSGP 742

Query: 531  IPPCFDNTTLHESSNNS-------YSLKPFE--------TSLVMDSMMIPAEKQIHENFE 575
            +P C  N +  ES   +       +   P E        T  ++ S  IP   +  E  E
Sbjct: 743  LPSCLGNLSFKESYEKASVDFGFHFGSTPIEKAYYEFNQTRALLGSSYIPITTE--EVIE 800

Query: 576  FTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTF 635
            FT K++ Y Y+GK+LS +SG+DLS NK  G IPP++GNL+ +  LNLSHNNLTG IP+TF
Sbjct: 801  FTAKSMYYGYKGKILSFMSGIDLSSNKFSGAIPPELGNLSELLALNLSHNNLTGSIPATF 860

Query: 636  SNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYE 695
            SNLK IES DLSYN L+G IPH+L E+ TL VFSVA+NNLSGE PE   QF TF+ESSYE
Sbjct: 861  SNLKQIESFDLSYNNLDGVIPHKLYEITTLEVFSVAHNNLSGETPERKYQFGTFDESSYE 920

Query: 696  GNTFLCGLPLPICRSPATMSEASIGNER--DDNLIDIDSFFITFTTSYVVVIFGIVIVLY 753
            GN FLCG PL    S        + N++  DD  ID++ F+I+    Y+VV+ GI  VLY
Sbjct: 921  GNPFLCGPPLQNNCSEEESPSLPMPNDKQEDDGFIDMNFFYISLGVGYIVVVMGIAAVLY 980

Query: 754  VNSYWRRKWFYFVEMWITSCYYFVV 778
            +N YWR  WF F++  I +C+ F++
Sbjct: 981  INPYWRCGWFNFIDYCIDTCFNFLL 1005

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 363/793 (45%), Positives = 499/793 (62%), Gaps = 33/793 (4%)

Query: 5    KVNGLVRGQGFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSR 64
            K+ G V  +   + ++L+ LD+  + T +++S LQI+ E M SLK LS+  +  G N S+
Sbjct: 678  KLEGSVTLRELNNLRNLEVLDL--SSTNISSSILQIV-EVMTSLKALSLRSN--GINGSQ 732

Query: 65   ILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTS 124
               QGLC L +LQEL + +N   GS+  CL N+TSLR LD+S N+ +G++ SS    L  
Sbjct: 733  TALQGLCKLKNLQELDLSDNGFEGSVSPCLGNLTSLRALDLSKNRFSGNLDSSLFAGLMK 792

Query: 125  IEELMLSNNHFQIPISLEPLFNHSRLKIFD--AANNEIKAEITESHSLT-APNFQLQALS 181
            +E L LS+N FQ    +     HS+L++ D    NN +   + ES   T  P+FQL+   
Sbjct: 793  LEFLSLSHNVFQTFPPISSFAKHSKLEVLDLICGNNTL---LLESEDQTWVPSFQLKVFR 849

Query: 182  LSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPF 241
            LSS      + P FL++QHDL  V LS+ +++ +FP WL++NNT+L +L L N+SLTG F
Sbjct: 850  LSSCILKTGSIPSFLHYQHDLRVVDLSNSSLEEDFPTWLMKNNTRLEELNLKNNSLTGYF 909

Query: 242  RLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQ 301
             LP   + +   +D+SNN  QG +P  I   LP+L+  N+S N+ + SIPS FG M  L 
Sbjct: 910  HLPYRPNIFTSAIDISNNLLQGQMPSNISVSLPNLMFLNVSRNSFEGSIPS-FGGMRKLL 968

Query: 302  ILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEG 361
             LDLSNN  TG IPE LA+ C +LE+L LS N+L G MF R  NL +LR L+L+ NH  G
Sbjct: 969  FLDLSNNLFTGGIPEDLAMGCPSLEYLILSKNDLHGQMFPRVSNLPSLRHLELDDNHFSG 1028

Query: 362  EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSL 421
            +IP  LS  S LE LY+++NS+SGK+P W+GN++ L  ++MP N LEGPIPV FC L +L
Sbjct: 1029 KIPD-LSNSSGLERLYVSHNSISGKLPGWIGNMSNLAALVMPNNSLEGPIPVEFCSLDAL 1087

Query: 422  QILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNG 481
            ++LD+S+NN+SGSLPSCF P  +  VHL +N L G L +  F     L TLD+  N L+G
Sbjct: 1088 ELLDLSNNNLSGSLPSCFSPSLLIHVHLQENHLTGPLTKA-FTRSMDLATLDIRNNNLSG 1146

Query: 482  SIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLH 541
             IP+W+   S LS L+L  N+ +G++P QLC+L+++ +LDLS N+L G IP C +     
Sbjct: 1147 GIPDWISMFSGLSILLLKGNHFQGKIPYQLCQLSKITILDLSYNSLSGHIPSCLNKIQFR 1206

Query: 542  ESSNN------SYSLKPFETSLVMDSMMIPAEKQIHEN----------FEFTTKNIAYIY 585
                +      SY   P  +S +  S  I    Q++ N           EFTTKN    Y
Sbjct: 1207 TGFRSGKFSIISYFPSPGFSSYLYHSQHIELS-QVNVNSYPIAYDKAMAEFTTKNRTDFY 1265

Query: 586  QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLD 645
            +G  L  ++G+DLS NKL G IPP+IGNL+++  LNLSHN LTG IP+ FS LK IESLD
Sbjct: 1266 KGNFLYSMTGIDLSSNKLTGAIPPEIGNLSQVHALNLSHNILTGPIPAAFSGLKSIESLD 1325

Query: 646  LSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL 705
            LSYN L G IP +L EL  LAVFSVAYNNLSG+IPE TAQF TF E+SY GN +LCG  L
Sbjct: 1326 LSYNNLTGTIPGELTELTNLAVFSVAYNNLSGKIPEMTAQFGTFLENSYVGNPYLCGSLL 1385

Query: 706  PICRSPATMSEASIGNERDDNLIDIDSFFITFTTSYVVVIFGIVIVLYVNSYWRRKWFYF 765
               ++ +   E +   E +  L D D F+++F  SYVVV+ G+  VLY+N  WR+KWF+ 
Sbjct: 1386 R--KNCSRAEEEAEIEEGEKGLTDRDIFYVSFGASYVVVLLGVAAVLYINGGWRKKWFHV 1443

Query: 766  VEMWITSCYYFVV 778
            +++ IT C  FV+
Sbjct: 1444 IDVLITCCCNFVM 1456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073382|ref|XP_002304087.1| predicted protein [Populus trichocarpa] gi|222841519|gb|EEE79066.1| predicted protein [Populus trichocarpa]

 Score =  593 bits (1529), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 352/738 (47%), Positives = 455/738 (61%), Gaps = 34/738 (4%)

Query: 69   GLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 128
            G C + +L++L +  N+  GSLP CL N++SL++LD+S NQ TG+I+ SPL +L S+E L
Sbjct: 567  GWCEMKNLKQLDLSGNNFGGSLPDCLGNLSSLQLLDISENQFTGNIAFSPLTNLISLEFL 626

Query: 129  MLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLS-SGYG 187
             LSNN F++P S++P  NHS LK F   NN +  E      L  P FQL   SLS +   
Sbjct: 627  SLSNNLFEVPTSMKPFMNHSSLKFFCNENNRLVIEPAAFDHLI-PKFQLVFFSLSKTTEA 685

Query: 188  DGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHS 247
              V  P FLY+Q+ L  + LSH N+ G FP+WLL+NNT+L QLYL  +S+ G  +L  H 
Sbjct: 686  LNVEIPNFLYYQYHLRFLDLSHNNITGMFPSWLLKNNTRLEQLYLSGNSIVGTLQLQDHP 745

Query: 248  HRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSN 307
            +  +  LD+SNNN  G IP +I  I P+L    ++ N     IPS  GNM+ L +LDLSN
Sbjct: 746  YPKMTELDISNNNMSGQIPKDICLIFPNLDGLRMAKNGFTGCIPSCLGNMSSLGVLDLSN 805

Query: 308  NQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQS- 366
            NQL+    E L      + FL LSNNNL G + +  FN +    L L  N+  G+I  S 
Sbjct: 806  NQLSTVKLELLTT----IWFLKLSNNNLGGQIPTSMFNSSTSEYLYLGDNNFWGQISDSP 861

Query: 367  LSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGF-CQLYSLQILD 425
            L+   +   L L+NN  SG +PRW  N T L  I + +NH EGPI   F C+L  L+ LD
Sbjct: 862  LNGWKTWIVLDLSNNQFSGILPRWFVNSTNLIAIDLSKNHFEGPISRHFFCKLDQLEYLD 921

Query: 426  ISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPN 485
            +S+NN+ G +PSCF+   I  VHLSKN L G LK   F++ SSLVT+DL  N   GSIPN
Sbjct: 922  LSENNLFGYIPSCFNSPQITHVHLSKNRLSGPLKY-EFYNSSSLVTMDLRDNSFTGSIPN 980

Query: 486  WVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSN 545
            WV  LS LS L+L  N+L+GE+PVQLC L QL +LD+S N L GP+P C +N T  ESS 
Sbjct: 981  WVGNLSSLSVLLLRANHLDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLENLTFKESSQ 1040

Query: 546  NS------YSLKPFETSLVMDSMMIPAEKQIH------------ENFEFTTKNIAYIYQG 587
             +      + L  F      + M  P    I+            E  EFTTKN+ Y Y+G
Sbjct: 1041 KALMNLGGFLLPGFIEKAYNEIMGPPQVNSIYTLLKGYWPNFTEEVIEFTTKNMYYGYKG 1100

Query: 588  KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLS 647
            K+LS +SG+DLS N  +G IPP+ GNL+ I +LNLSHNNLTG IP+TFSNLK IESLDLS
Sbjct: 1101 KILSYMSGIDLSDNNFVGAIPPEFGNLSEILSLNLSHNNLTGSIPATFSNLKRIESLDLS 1160

Query: 648  YNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP- 706
            YN  NG IP QL E+ TL VFSVA+NNLSG+ PE   QF TF+ES YEGN FLCG PL  
Sbjct: 1161 YNNFNGDIPPQLTEMTTLEVFSVAHNNLSGKTPERKYQFGTFDESCYEGNPFLCGPPLRN 1220

Query: 707  ICRSPATMSEASIGN------ERDDNLIDIDSFFITFTTSYVVVIFGIVIVLYVNSYWRR 760
             C     +S+  +        + DD  ID++ F+I+F+  Y VV+  I  VLY+N YWRR
Sbjct: 1221 NCSEEVVLSQPVLSQPVPNDEQEDDGFIDMEFFYISFSVCYTVVVMTIAAVLYINPYWRR 1280

Query: 761  KWFYFVEMWITSCYYFVV 778
            +W YF+E  I +CYYFVV
Sbjct: 1281 RWLYFIEDCIDTCYYFVV 1298

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073422|ref|XP_002304093.1| predicted protein [Populus trichocarpa] gi|222841525|gb|EEE79072.1| predicted protein [Populus trichocarpa]

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 364/779 (46%), Positives = 477/779 (61%), Gaps = 48/779 (6%)

Query: 23  HLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTL-GTNSSRILDQGLCSLMHLQELYI 81
           HLD     T+L  +FLQ  R ++P+LK LS+ +  L GT    +  QG C L +L++L +
Sbjct: 205 HLD----NTSLPINFLQNTR-ALPALKVLSVGECDLHGT----LPAQGWCELKNLKQLDL 255

Query: 82  DNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISL 141
             N+  G+LP CL N++SL +LDVS NQ TG+I S PL +L S+E L LSNN F++P S+
Sbjct: 256 ARNNFGGALPDCLGNLSSLTLLDVSENQFTGNIVSGPLTNLVSLEFLSLSNNLFEVPTSM 315

Query: 142 EPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSL-SSGYGDGVTFPKFLYHQH 200
           +P  NHS LK F + NN +  E     +L  P FQL  LSL  +     V  P FLY+Q+
Sbjct: 316 KPFMNHSSLKFFSSENNRLVTEPAAFDNLI-PKFQLVFLSLLKTTEALNVHIPDFLYYQY 374

Query: 201 DLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNN 260
           DL  + LSH N+ G FP+WLL+NNT++ QL L ++S  G  +LP H +  +  LD+SNNN
Sbjct: 375 DLRVLDLSHNNITGMFPSWLLKNNTRMEQLDLSDNSFVGTLQLPDHPYPNMTKLDISNNN 434

Query: 261 FQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAV 320
               IP +I  ILP+L S  +  N     IPS  GN++ L +LDLSNNQL+    E L  
Sbjct: 435 MNSQIPKDICLILPNLESLRMVKNGFTGCIPSCLGNISSLSVLDLSNNQLSTVKLELLTT 494

Query: 321 SCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQ-SLSKCSSLEGLYLN 379
               L FL LSNNNL G +    FN + L  L L GN+  G+I   SL +      L L+
Sbjct: 495 ----LMFLKLSNNNLGGQIPISVFNSSTLEFLYLNGNNFCGQILYLSLYEQKMWFVLDLS 550

Query: 380 NNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGF-CQLYSLQILDISDNNISGSLPSC 438
           NN  SG +PRW  N T L+ I + +NH +GPIP  F C+   L+ LD+S+NN+SG +PSC
Sbjct: 551 NNQFSGMLPRWFVNSTVLEAIDLSKNHFKGPIPRDFFCKFDHLEYLDLSENNLSGYIPSC 610

Query: 439 FHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLIL 498
           F P  I  +HLSKN L G L  G F++ SSLVT+DL  N    SIPNW+  LS LS L+L
Sbjct: 611 FSPPQITHLHLSKNRLSGPLTYG-FYNSSSLVTMDLQDNSFTDSIPNWIGNLSSLSVLLL 669

Query: 499 GHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNN----------SY 548
             N+ +           QL +LD+S N L GP+P C  N T  ESS            S 
Sbjct: 670 RANHFD----------EQLSILDVSQNQLSGPLPSCLGNLTFKESSQKAILDFVIFDISR 719

Query: 549 SLKP--FET--SLVMDSMMIPAE---KQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCN 601
           S++   +ET    ++DS+ +        I E  EFTTK ++Y Y+GKVL+ +SG+DLS N
Sbjct: 720 SIEKTYYETMGPPLVDSVYLGKGFGLNLIEEVIEFTTKKMSYGYKGKVLNYMSGIDLSNN 779

Query: 602 KLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE 661
             +G IPP+ GNL+ I +LNLSHNNLTG IP+TFSNLK IESLDLSYN LNG IP QL E
Sbjct: 780 NFVGAIPPEFGNLSEILSLNLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGVIPPQLTE 839

Query: 662 LKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP-ICRSPATMSEASIG 720
           + TL VFSVA+NNLSG+ PE   QF TF+ES YEGN FLCG PL   C   A  S+    
Sbjct: 840 ITTLEVFSVAHNNLSGKTPERKYQFGTFDESCYEGNPFLCGPPLRNNCSEEAVSSQPVPN 899

Query: 721 NER-DDNLIDIDSFFITFTTSYVVVIFGIVIVLYVNSYWRRKWFYFVEMWITSCYYFVV 778
           +E+ DD  +D++ F+I+F   Y VV+  I  VLY+N YWRR+W +F+E  I +CYYF V
Sbjct: 900 DEQGDDGFVDMEFFYISFGVCYTVVVMTIAAVLYINPYWRRRWLFFIEDCIDTCYYFGV 958

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073452|ref|XP_002304097.1| predicted protein [Populus trichocarpa] gi|222841529|gb|EEE79076.1| predicted protein [Populus trichocarpa]

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 335/705 (47%), Positives = 437/705 (61%), Gaps = 29/705 (4%)

Query: 97  MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAA 156
           M+SL++LDVS NQ TG+I+  PL +L S+E L LSNN F++PIS++P  NHS LK F + 
Sbjct: 1   MSSLQLLDVSENQFTGNIAFGPLTNLISLEFLSLSNNLFEVPISIKPFMNHSSLKFFSSE 60

Query: 157 NNEIKAEITESHSLTAPNFQLQALSLSSGYGDGV--TFPKFLYHQHDLEDVRLSHVNMDG 214
           NN++  E     +L  P FQL    LSS          P FLY+Q DL  + LSH N+ G
Sbjct: 61  NNKLVTEPAAFDNLI-PKFQLVFFRLSSSPTSEALNVIPDFLYYQLDLRALDLSHNNITG 119

Query: 215 EFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILP 274
            FP+WLL+NNT+L QLYL ++S  G  +L  H H  +  LD+SNNN  G IP +I  I P
Sbjct: 120 MFPSWLLKNNTRLEQLYLSDNSFIGALQLQDHLHPNMTNLDISNNNMNGQIPKDICLIFP 179

Query: 275 SLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNN 334
           +L +  ++ N     IPS  GN++ L  LDLSNNQL+    E L    V    L LSNNN
Sbjct: 180 NLHTLRMAKNGFTGCIPSCLGNISSLSFLDLSNNQLSTVKLEQLTTIWV----LKLSNNN 235

Query: 335 LKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQ-SLSKCSSLEGLYLNNNSLSGKIPRWLGN 393
           L G + +  FN + L  L L GN+  G+I    L + +    L L+NN  SG +PR   N
Sbjct: 236 LGGKIPTSVFNSSRLNFLYLNGNNFWGQISDFPLYRWNVWNVLDLSNNQFSGMLPRSFVN 295

Query: 394 LTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNM 453
            + L  I +  NH +GPIP  FC+   L+ LD+S+NN+SG +PSCF P  I  VHLSKN 
Sbjct: 296 FSILGVIDLSGNHFKGPIPRDFCKFDQLEYLDLSENNLSGYIPSCFSPPQITHVHLSKNR 355

Query: 454 LHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCE 513
           L G L    FF+ S LVT+DL  N   GSIPNW+  LS LS L+L  N+ +GE+P+QLC 
Sbjct: 356 LSGPLTYA-FFNSSYLVTMDLRENSFTGSIPNWIGNLSSLSVLLLRANHFDGELPIQLCL 414

Query: 514 LNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNS-------YSLKPFETSL--VMDSMMI 564
           L QL +LD+S+N L GP+P C  N T  +S   +       +  +  E +   +M   ++
Sbjct: 415 LEQLSILDVSHNQLSGPLPSCLGNLTFKKSDKKAILEVAYGFISESIEKAYYEIMGPPLV 474

Query: 565 PAEKQIHENF---------EFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLT 615
            +   +   F         EFTTKN+ Y Y+GKVL+ + G+DLS N  IG IPP+ GNL+
Sbjct: 475 DSVDNLRNFFLFNFTEEVTEFTTKNMYYGYKGKVLNYMFGIDLSNNNFIGAIPPEFGNLS 534

Query: 616 RIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNL 675
           +I ++NLSHNNLTG IP+TFSNL HIESLDLSYN LNG IP Q  E+ TL VFSVA+NNL
Sbjct: 535 KILSVNLSHNNLTGSIPATFSNLMHIESLDLSYNNLNGAIPPQFTEVTTLEVFSVAHNNL 594

Query: 676 SGEIPEWTAQFATFNESSYEGNTFLCGLPLP-ICRSPATMSEASIGNER-DDNLIDIDSF 733
           SG+ PE   QF TF+ES YEGN FLCG PLP  C   A +S+    +E+ DD  ID++ F
Sbjct: 595 SGKTPERIYQFGTFDESCYEGNPFLCGPPLPNNCSEKAVVSQPVPNDEQGDDGFIDMEFF 654

Query: 734 FITFTTSYVVVIFGIVIVLYVNSYWRRKWFYFVEMWITSCYYFVV 778
           +I+F   Y VV+  I  VLY+N YWRR+W YF+E  I +CYYFVV
Sbjct: 655 YISFGVCYTVVVMTIAAVLYINPYWRRRWLYFIEDCIDTCYYFVV 699

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098008|ref|XP_002334579.1| predicted protein [Populus trichocarpa] gi|222873205|gb|EEF10336.1| predicted protein [Populus trichocarpa]

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 352/764 (46%), Positives = 458/764 (59%), Gaps = 52/764 (6%)

Query: 23   HLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTL-GTNSSRILDQGLCSLMHLQELYI 81
            HLD     T+L  +FLQ    ++P+LK LS+++  L GT    +  QG C L +L++L +
Sbjct: 367  HLD----NTSLPINFLQNT-GALPALKVLSVAECDLHGT----LPAQGWCELKNLKQLDL 417

Query: 82   DNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISL 141
              N+  G+LP CL N++SL++LDVS NQ TG+I+  PL  L S+E L LSNN F++PIS+
Sbjct: 418  ARNNFGGALPDCLGNLSSLQLLDVSDNQFTGNIAFGPLTKLISLEFLSLSNNLFEVPISM 477

Query: 142  EPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSG---YGDGVTFPKFLYH 198
            +P  NHS LK F + NN +  E     +L  P FQL    LSS        V    FLY+
Sbjct: 478  KPFMNHSSLKFFSSENNRLVTESAAFDNLI-PKFQLVFFRLSSSPTSEALNVEILDFLYY 536

Query: 199  QHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSN 258
            Q+DL  + LSH N+ G FP+WLL+NNT++ QLYL  +S  G  +L  H +  +  LD+SN
Sbjct: 537  QYDLRTLDLSHNNIFGMFPSWLLKNNTRMEQLYLSENSFVGTLQLLDHPYPNMTELDISN 596

Query: 259  NNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHL 318
            NN  G IP +I  I P+L    ++ N     IPS  GN + L  LDLSNNQL+    E L
Sbjct: 597  NNINGQIPKDICLIFPNLWILRMADNGFTGYIPSCLGNFSSLSFLDLSNNQLSTVKLEQL 656

Query: 319  AVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQ-SLSKCSSLEGLY 377
                  ++ L LSNN+L G + +  FN +  + L L GN+  G+I    L        L 
Sbjct: 657  TT----IQVLKLSNNSLGGQIPTSVFNSSISQYLYLGGNYFWGQISDFPLYGWKVWSVLD 712

Query: 378  LNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPS 437
            L+NN  SG +PR   N T  + + + +N  +GPIP  FC+L  L+ LD+SDN +SG +PS
Sbjct: 713  LSNNQFSGMLPRSFFNFTYDEVLDLSKNLFKGPIPRDFCKLDRLEFLDLSDNYLSGYMPS 772

Query: 438  CFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLI 497
            CF+P  I  +HLSKN L G L  G F++ SSLVT+DL  N   GSIPNW+  LS LS L+
Sbjct: 773  CFNPPQITHIHLSKNRLSGPLTYG-FYNSSSLVTMDLRDNSFIGSIPNWIGNLSSLSVLL 831

Query: 498  LGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSL 557
            L  NN +GE+ VQLC L QL +LD+S N L GP+P C  N TL                 
Sbjct: 832  LRANNFDGELAVQLCLLEQLSILDVSQNQLSGPLPSCLGNLTL----------------- 874

Query: 558  VMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRI 617
                      K+I EN       I +   GKVLS + G+DLS N  +G IPP+ GNL++I
Sbjct: 875  ----------KEIPENAR--GSRIWFSVMGKVLSYMYGIDLSNNNFVGAIPPEFGNLSKI 922

Query: 618  QTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSG 677
             +LNLSHNNLTG IP+TFSNLK IESLDLSYN LNG IP QL E+ TL VFSVAYNNLSG
Sbjct: 923  LSLNLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGAIPPQLTEITTLEVFSVAYNNLSG 982

Query: 678  EIPEWTAQFATF-NESSYEGNTFLCGLPLP-ICRSPATMSEASIGNER-DDNLIDIDSFF 734
              PE   QF TF +E+ YEGN FLCG PL   C   A   +    +E+ DD  ID++ F+
Sbjct: 983  RTPERKYQFGTFDDENCYEGNPFLCGPPLRNNCSEEAVPLQPVPNDEQGDDGFIDMEFFY 1042

Query: 735  ITFTTSYVVVIFGIVIVLYVNSYWRRKWFYFVEMWITSCYYFVV 778
            I+F   Y VV+  I  VLY+N YWRR+W YF+E  I +CYYFVV
Sbjct: 1043 ISFGVCYTVVVMTIAAVLYINPYWRRRWSYFIEDCINTCYYFVV 1086

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	788
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.961	0.758	0.364	1.2e-120
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.821	0.597	0.383	8.3e-106
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.940	0.759	0.354	2.8e-105
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.940	0.831	0.344	4.2e-102
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.576	0.5	0.364	6.7e-102
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.902	0.760	0.347	2e-88
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.808	0.660	0.345	1.4e-85
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.852	0.538	0.307	1.3e-61
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.814	0.547	0.302	1.9e-63
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.795	0.551	0.312	4e-61

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 1187 (422.9 bits), Expect = 1.2e-120, P = 1.2e-120
 Identities = 293/803 (36%), Positives = 432/803 (53%)

Query:    12 GQGFP--HFKSLDHLDMV-FARTALNTSFLQIIRESMPSLKYLSMSDSTLGTN---SSRI 65
             G  FP    + L +++++  +R   N S       ++  LK L +SD+   ++     + 
Sbjct:   186 GGPFPAKELRDLTNVELLDLSRNRFNGSIPVRALFALRKLKALDLSDNEFSSSVELQGKF 245

Query:    66 LD----QGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVH 121
                    G C   +++EL + NN L G  P CL ++T LR+LD+SSNQLTG++ S+ L +
Sbjct:   246 AKTKPLSGTCPWKNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSA-LAN 304

Query:   122 LTSIEELMLSNNHFQIPISLEPLFNHSRLKIF--DAANNEIKAEITESHSLTAPNFQLQA 179
             L S+E L L  N+F+   SL  L N S+LK+   D+ +N ++ E   S     P FQL  
Sbjct:   305 LESLEYLSLFGNNFEGFFSLGLLANLSKLKVLRLDSQSNSLEVEFETSWK---PKFQLVV 361

Query:   180 LSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTG 239
             ++L S   + V  P FL HQ DL  V LS   + G FP+WLLENNTKL  L L N+S T 
Sbjct:   362 IALRSCNLEKV--PHFLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNSFTS 419

Query:   240 PFRLPIHSHRWLRFLDVSNNNFQGHIPVE-IGDILPSLISFNISMNALDSSIPSSFGNMN 298
              F+LP  +H  L FL+VS N F  H+ ++  G ILP L+  N++ N    ++PSS  NM 
Sbjct:   420 -FQLPKSAHNLL-FLNVSVNKFN-HLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMK 476

Query:   299 FLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNH 358
              ++ LDLS+N+  G++P      C NL  L LS+N L G +F    N T L  + ++ N 
Sbjct:   477 SIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMDNNL 536

Query:   359 LEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQL 418
               G I +      SL  L ++NN L+G IP W+G   GL  + +  N LEG IP     +
Sbjct:   537 FTGNIGKGFRSLPSLNVLDISNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTSLFNI 596

Query:   419 YSLQILDISDNNISGSLPSCFHPLSIEQ---VHLSKNMLHGQLKRGTFFHCSSLVTLDLS 475
               LQ+LD+S N +SG +P   H  SI     + L  N L G +      +   ++ LDL 
Sbjct:   597 SYLQLLDLSSNRLSGDIPP--HVSSIYHGAVLLLQNNNLSGVIPDTLLLN---VIVLDLR 651

Query:   476 YNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGPIPPCF 535
              NRL+G++P +++    +S L+L  NN  G++P                   +G IP C 
Sbjct:   652 NNRLSGNLPEFIN-TQNISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGSIPSCL 710

Query:   536 DNTTLH-ESSNNSY---------SLK-P--FETSLVMDSMMIPAEKQIHENFEFTTKNIA 582
              NT+      ++SY         + K P  FE+ L++D   +  E       EF TK+  
Sbjct:   711 SNTSFGLRKGDDSYRYDVPSRFGTAKDPVYFESLLMIDEFNMVNETNSQTKIEFATKHRY 770

Query:   583 YIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIE 642
               Y G  L LL G+DLS N+L G IP ++G L  ++ LNLSHNNL+G+I  +FS LK++E
Sbjct:   771 DAYMGGNLKLLFGMDLSENELSGEIPVELGGLVELEALNLSHNNLSGVILESFSGLKNVE 830

Query:   643 SLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG 702
             SLDLS+N+L G IP QL ++ +LAVF+V+YNNLSG +P+   QF TF   SY GN  LCG
Sbjct:   831 SLDLSFNRLQGPIPLQLTDMISLAVFNVSYNNLSGIVPQGR-QFNTFETQSYFGNPLLCG 889

Query:   703 LPLPICRSPATMSEASIGNERDDNLIDIDSFFITFTTSYVVVIFGIVIVLYVNSYWRRKW 762
               + I  +         G E D++ +D++SF+ +F  +YV ++ GI+  L  +S W R W
Sbjct:   890 KSIDISCASNNFHPTDNGVEADESTVDMESFYWSFVAAYVTILLGILASLSFDSPWSRAW 949

Query:   763 FYFVEMWITSCYYFVVDNLIPTR 785
             FY V+ ++      +  N   T+
Sbjct:   950 FYIVDAFVLKVRNMLWQNTAGTK 972

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 1047 (373.6 bits), Expect = 8.3e-106, P = 8.3e-106
 Identities = 259/675 (38%), Positives = 373/675 (55%)

Query:    47 SLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 106
             SL+ L    + L       L  G+C LM L+EL + +N L  SLP+CL N+T LR LD+S
Sbjct:   333 SLQVLDFKRNQLSLTHEGYL--GICRLMKLRELDLSSNALT-SLPYCLGNLTHLRTLDLS 389

Query:   107 SNQLTGSISSSPLVHLTSI-EELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEIT 165
             +NQL G++SS  +  L S+ E L L +N+F        L N +RL +F  ++     ++ 
Sbjct:   390 NNQLNGNLSSF-VSGLPSVLEYLSLLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQV- 447

Query:   166 ESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNT 225
             ++ S  AP FQL+ L LS+    G T   FL HQ DL  V LSH  + G FP WL++NNT
Sbjct:   448 QTESSWAPLFQLKMLYLSN-CSLGSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNT 506

Query:   226 KLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNA 285
             +L+ + L  +SLT   +LPI  H  L+ LD+S+N     I  +IG + P+L   N S N 
Sbjct:   507 RLQTILLSGNSLT-KLQLPILVHG-LQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNH 564

Query:   286 LDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFN 345
                +IPSS G M  LQ+LD+S+N L G++P      C +L  L LSNN L+G +FS++ N
Sbjct:   565 FQGTIPSSIGEMKSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHAN 624

Query:   346 LTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPEN 405
             LT L  L L+GN+  G + + L K  +L  L +++N  SG +P W+G ++ L ++ M  N
Sbjct:   625 LTGLVGLFLDGNNFTGSLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGN 684

Query:   406 HLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFH 465
              L+GP P    Q   ++++DIS N+ SGS+P   +  S+ ++ L  N   G L  G  F 
Sbjct:   685 QLKGPFPF-LRQSPWVEVMDISHNSFSGSIPRNVNFPSLRELRLQNNEFTG-LVPGNLFK 742

Query:   466 CSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXX 525
              + L  LDL  N  +G I N +D  S+L  L+L +N+ +  +P                 
Sbjct:   743 AAGLEVLDLRNNNFSGKILNTIDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHN 802

Query:   526 XXHGPIPPCFDNTTLH-ESSNNSYSL-KPFETSLV------MDSMMIPAEKQIHENFE-- 575
                GPIP CF   +   E ++ + SL   F+ S +           +  +  +   ++  
Sbjct:   803 QFRGPIPSCFSKMSFGAEQNDRTMSLVADFDFSYITFLPHCQYGSHLNLDDGVRNGYQPK 862

Query:   576 ------FTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTG 629
                   F TK+    YQG +L  + GLDLS N+L G IP +IG+L  I++LNLS N LTG
Sbjct:   863 PATVVDFLTKSRYEAYQGDILRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTG 922

Query:   630 LIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATF 689
              IP + S LK +ESLDLS NKL+G IP  L +L +L   +++YNNLSGEIP +     TF
Sbjct:   923 SIPDSISKLKGLESLDLSNNKLDGSIPPALADLNSLGYLNISYNNLSGEIP-FKGHLVTF 981

Query:   690 NESSYEGNTFLCGLP 704
             +E SY GN  LCGLP
Sbjct:   982 DERSYIGNAHLCGLP 996

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 1042 (371.9 bits), Expect = 2.8e-105, P = 2.8e-105
 Identities = 277/782 (35%), Positives = 416/782 (53%)

Query:    15 FPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLM 74
             F H + L  LD+  A    +   LQ ++  + +L+ L ++ + L      I  +  C + 
Sbjct:   206 FTHLEKLKALDLS-ANDFSSLVELQELKV-LTNLEVLGLAWNHL---DGPIPKEVFCEMK 260

Query:    75 HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH 134
             +L++L +  N   G LP CL N+  LR+LD+SSNQL+G++ +S    L S+E L LS+N+
Sbjct:   261 NLRQLDLRGNYFEGQLPVCLGNLNKLRVLDLSSNQLSGNLPAS-FNSLESLEYLSLSDNN 319

Query:   135 FQIPISLEPLFNHSRLKIFDAANNEIKAEI-TESHSLTAPNFQLQALSLSSGYGDGVTFP 193
             F+   SL PL N ++LK+F  ++     ++ TES+ L  P FQL   +L   +      P
Sbjct:   320 FEGFFSLNPLANLTKLKVFRLSSTSEMLQVETESNWL--PKFQLTVAALP--FCSLGKIP 375

Query:   194 KFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRF 253
              FL +Q +L  V LS   + G+ P WLLENN +L+ L L N+S T  F++P   H+ L+ 
Sbjct:   376 NFLVYQTNLRLVDLSSNRLSGDIPTWLLENNPELKVLQLKNNSFT-IFQIPTIVHK-LQV 433

Query:   254 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGE 313
             LD S N+  G +P  IG +LP L+  N S N    ++PSS G MN +  LDLS N  +GE
Sbjct:   434 LDFSANDITGVLPDNIGHVLPRLLHMNGSHNGFQGNLPSSMGEMNDISFLDLSYNNFSGE 493

Query:   314 IPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSL 373
             +P  L   C +L  L LS+N+  G +      LT+L  L++  N   GEI   L    +L
Sbjct:   494 LPRSLLTGCFSLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNL 553

Query:   374 EGLYLNNNSLSGKIPRWLG-NLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNIS 432
                  +NN L+G I   +  + + L  +++  N LEG +P     ++ L  LD+S N +S
Sbjct:   554 SIFDASNNRLTGLISSSIPPDSSHLIMLLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLS 613

Query:   433 GSLPSCF-HPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLS 491
             G LPS   + +   ++ L  N   G L   T    + +  LDL  N+L+GSIP +V+   
Sbjct:   614 GDLPSSVVNSMYGIKIFLHNNSFTGPLPV-TLLENAYI--LDLRNNKLSGSIPQFVNTGK 670

Query:   492 QLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGPIPPCFDN--TTLHE------- 542
              ++ L+ G NNL G +P                   +G IPPC ++  T L E       
Sbjct:   671 MITLLLRG-NNLTGSIPRKLCDLTSIRLLDLSDNKLNGVIPPCLNHLSTELGEGIGLSGF 729

Query:   543 ----SSNNSYSLKPFETSLVMDSMMIPAEKQ-IHENFEFTTKNIAYIYQGKVLSLLSGLD 597
                 S  +S  ++ + ++ ++D  M+  +   +    EF  K     + G  L  + GLD
Sbjct:   730 SQEISFGDSLQMEFYRSTFLVDEFMLYYDSTYMIVEIEFAAKQRYDSFSGGTLDYMYGLD 789

Query:   598 LSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH 657
             LS N+L G IP ++G+L++++ LNLS N L+  IP+ FS LK IESLDLSYN L G IPH
Sbjct:   790 LSSNELSGVIPAELGDLSKLRALNLSRNLLSSSIPANFSKLKDIESLDLSYNMLQGNIPH 849

Query:   658 QLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP-ICRSPATMSE 716
             QL  L +LAVF+V++NNLSG IP+   QF TFN++SY GN  LCG P    C       E
Sbjct:   850 QLTNLTSLAVFNVSFNNLSGIIPQG-GQFNTFNDNSYLGNPLLCGTPTDRSCEGKKNTKE 908

Query:   717 ASIGNER----DDNLIDIDSFFITFTT--SYVVVIFGIVIVLYVNSYWRRKWFYFVEMWI 770
             A  G E     DD+   ID   + +TT  +Y + + GI++++  +  WRR W   V+ +I
Sbjct:   909 ADNGGEEEEEDDDDEAAIDMVVLYWTTGSTYAIALIGILVLMCFDCPWRRTWLCIVDAFI 968

Query:   771 TS 772
              S
Sbjct:   969 AS 970

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1012 (361.3 bits), Expect = 4.2e-102, P = 4.2e-102
 Identities = 273/793 (34%), Positives = 410/793 (51%)

Query:     7 NGLVRGQGFP-----HFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTN 61
             + L +G GFP     +  SL+ LD+ F     N    Q+  + + +L+ L   D +    
Sbjct:   112 DNLFKG-GFPVQELINLTSLEVLDLKF-----NKFSGQLPTQELTNLRNLRALDLSNNKF 165

Query:    62 SSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVH 121
             S  +  QG+C L  LQEL +  N   G +P C +  + LR+LD+SSN L+G I    +  
Sbjct:   166 SGSLQKQGICRLEQLQELRLSRNRFEGEIPLCFSRFSKLRVLDLSSNHLSGKIPYF-ISD 224

Query:   122 LTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALS 181
               S+E L L +N F+   SL  +   + LK+F  ++     +I E++       QL ++ 
Sbjct:   225 FKSMEYLSLLDNDFEGLFSLGLITELTELKVFKLSSRSGMLQIVETNVSGGLQSQLSSIM 284

Query:   182 LSS-GYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGP 240
             LS    G     P FL++Q +L  + LS+  + G FP WLLENNT+L+ L L N+S    
Sbjct:   285 LSHCNLGK---IPGFLWYQQELRVIDLSNNILSGVFPTWLLENNTELQALLLQNNSFK-T 340

Query:   241 FRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFL 300
               LP  + R L+ LD+S NNF   +P ++G IL SL   N+S N    ++PSS   M  +
Sbjct:   341 LTLP-RTMRRLQILDLSVNNFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSMARMENI 399

Query:   301 QILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLE 360
             + +DLS N  +G++P +L   C +L +L LS+N   G +  ++ + T+L +L ++ N   
Sbjct:   400 EFMDLSYNNFSGKLPRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNNMFT 459

Query:   361 GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYS 420
             G+IP++L     L  + L+NN L+G IPRWLGN   L+ + +  N L+G IP     +  
Sbjct:   460 GKIPRTLLNLRMLSVIDLSNNLLTGTIPRWLGNFF-LEVLRISNNRLQGAIPPSLFNIPY 518

Query:   421 LQILDISDNNISGSLP----SCF------H--------P----LSIEQVHLSKNMLHGQL 458
             L +LD+S N +SGSLP    S +      H        P      +  + L  N L G +
Sbjct:   519 LWLLDLSGNFLSGSLPLRSSSDYGYILDLHNNNLTGSIPDTLWYGLRLLDLRNNKLSGNI 578

Query:   459 KRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXXX 518
                 F    S+  + L  N L G IP  + GLS +  L   HN L   +P          
Sbjct:   579 P--LFRSTPSISVVLLRENNLTGKIPVELCGLSNVRMLDFAHNRLNESIPSCVTNLSFGS 636

Query:   519 XXXXXXXXXHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTT 578
                        P        +L  +    Y+   +E+ +V D   +      +   EF  
Sbjct:   637 GGHSNADSDWYP-------ASLLSNFMEIYTEVYYESLIVSDRFSLDYSVDFNVQVEFAV 689

Query:   579 KNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNL 638
             K    +Y    L+ + GLDLS N+L G+IP ++G+L R+++LNLS N+L+G IP +FSNL
Sbjct:   690 KQRYDLYMRGTLNQMFGLDLSSNELSGNIPEELGDLKRVRSLNLSRNSLSGSIPGSFSNL 749

Query:   639 KHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNT 698
             + IESLDLS+NKL+G IP QL  L++L VF+V+YNNLSG IP+   QF TF E SY GN 
Sbjct:   750 RSIESLDLSFNKLHGTIPSQLTLLQSLVVFNVSYNNLSGVIPQGK-QFNTFGEKSYLGNF 808

Query:   699 FLCGLPLPICRSPATMSEASIGNERDDN-LIDIDSFFITFTTSYVVVIFGIVIVLYVNSY 757
              LCG P        T+S      + D++ L+DI   + +  T+YV V+ G ++ L  +S 
Sbjct:   809 LLCGSPTKRSCGGTTISSGKEYEDDDESGLLDIVVLWWSLGTTYVTVMMGFLVFLCFDSP 868

Query:   758 WRRKWFYFVEMWI 770
             WRR WF  V+ +I
Sbjct:   869 WRRAWFCLVDTFI 881

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 604 (217.7 bits), Expect = 6.7e-102, Sum P(2) = 6.7e-102
 Identities = 171/469 (36%), Positives = 239/469 (50%)

Query:    41 IRESMPSLKYLSMSD-STLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTS 99
             +RE  P LK L   D S+ G  SS    Q  C + +LQEL +   +  G LP C  N+  
Sbjct:   188 VRE-FPYLKKLKALDLSSNGIYSSMEW-QVFCEMKNLQELDLRGINFVGQLPLCFGNLNK 245

Query:   100 LRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNE 159
             LR LD+SSNQLTG+I  S    L S+E L LS+N F+   SL PL N ++LK+F  ++ +
Sbjct:   246 LRFLDLSSNQLTGNIPPS-FSSLESLEYLSLSDNSFEGFFSLNPLTNLTKLKVFIFSSKD 304

Query:   160 IKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNW 219
                ++ +  S   P FQL  L L     + +  P FL +Q +L  V LS   + G  P W
Sbjct:   305 DMVQV-KIESTWQPLFQLSVLVLRLCSLEKI--PNFLMYQKNLHVVDLSGNRISGIIPTW 361

Query:   220 LLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISF 279
             LLENN +L  L L N+S T  F++P   H  L+ LD S NN  G  P   G +LP+L+  
Sbjct:   362 LLENNPELEVLQLKNNSFT-IFQMPTSVHN-LQVLDFSENNIGGLFPDNFGRVLPNLVHM 419

Query:   280 NISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHM 339
             N S N    + PSS G M  +  LDLS N L+GE+P+    SC +L  L LS+N   GH 
Sbjct:   420 NGSNNGFQGNFPSSMGEMYNISFLDLSYNNLSGELPQSFVSSCFSLSILQLSHNKFSGHF 479

Query:   340 FSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKH 399
               R  N T+L  L++  N   G+I   L     L  L ++NN L G++P  L     L  
Sbjct:   480 LPRQTNFTSLIVLRINNNLFTGKIGVGLLTLVDLCILDMSNNFLEGELPPLLLVFEYLNF 539

Query:   400 IIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLK 459
             + +  N L G +P     L +  +L + +NN +G +P  F   SI+ + L  N L G + 
Sbjct:   540 LDLSGNLLSGALP-SHVSLDN--VLFLHNNNFTGPIPDTFLG-SIQILDLRNNKLSGNIP 595

Query:   460 RGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVP 508
             +  F     +  L L  N L G IP+ +   S++  L L  N L G +P
Sbjct:   596 Q--FVDTQDISFLLLRGNSLTGYIPSTLCEFSKMRLLDLSDNKLNGFIP 642

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 883 (315.9 bits), Expect = 2.0e-88, P = 2.0e-88
 Identities = 265/762 (34%), Positives = 373/762 (48%)

Query:    19 KSLDHLDMVFART-ALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQ 77
             K L +L+++  R   LN S  ++I   +  LK L +S +    +SS  L Q L +L++L+
Sbjct:   170 KDLTNLELLDLRANKLNGSMQELIH--LKKLKALDLSSNKF--SSSMEL-QELQNLINLE 224

Query:    78 ELYIDNNDLRGSLPW-CLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQ 136
              L +  N + G +P      + +LR LD+  N   G I    L  L  +  L LS+N   
Sbjct:   225 VLGLAQNHVDGPIPIEVFCKLKNLRDLDLKGNHFVGQIPLC-LGSLKKLRVLDLSSNQLS 283

Query:   137 --IPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQ--LQALSLSSGYGDGVTF 192
               +P S   L +   L + D  N +    +    +LT   F   L+  SL          
Sbjct:   284 GDLPSSFSSLESLEYLSLSDN-NFDGSFSLNPLTNLTNLKFVVVLRFCSLEK-------I 335

Query:   193 PKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLR 252
             P FL +Q  L  V LS  N+ G  P WLL NN +L  L L N+S T  F +P   H  L+
Sbjct:   336 PSFLLYQKKLRLVDLSSNNLSGNIPTWLLTNNPELEVLQLQNNSFT-IFPIPTMVHN-LQ 393

Query:   253 FLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTG 312
               D S NN  G  P ++   LP+L+  N S N      P+S G M  +  LDLS N  +G
Sbjct:   394 IFDFSANNI-GKFPDKMDHALPNLVRLNGSNNGFQGYFPTSIGEMKNISFLDLSYNNFSG 452

Query:   313 EIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSS 372
             ++P      CV++ FL LS+N   G    R  N  +L  L+++ N   G I   LS  + 
Sbjct:   453 KLPRSFVTGCVSIMFLKLSHNKFSGRFLPRETNFPSLDVLRMDNNLFTGNIGGGLSNSTM 512

Query:   373 LEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNIS 432
             L  L ++NN LSG IPRWL     L ++++  N LEG IP     +  L  LD+S N  S
Sbjct:   513 LRILDMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGMPFLSFLDLSGNQFS 572

Query:   433 GSLPSCFHP-LSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLS 491
             G+LPS     L I  + L  N   G +   T     S+  LDL  N+L+GSIP + D   
Sbjct:   573 GALPSHVDSELGI-YMFLHNNNFTGPIP-DTLL--KSVQILDLRNNKLSGSIPQF-DDTQ 627

Query:   492 QLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGPIPPCFDNTTLHESSNNSYSLK 551
              ++ L+L  NNL G +P                   +G IP C  N +      ++ +L 
Sbjct:   628 SINILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCLSNLSFGRLQEDAMALN 687

Query:   552 --P--FETSLVMDSMM-------IPAEKQIHENFE--FTTKNIAYIYQGK------VLSL 592
               P   +TSL M+          I  ++  ++  E  F  K     Y G+      +L L
Sbjct:   688 IPPSFLQTSLEMELYKSTFLVDKIEVDRSTYQETEIKFAAKQRYDSYSGRSEFSEGILRL 747

Query:   593 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 652
             + G+DLS N+L G IP ++G+L +++TLNLSHN+L G IPS+FS L  +ESLDLS+N L 
Sbjct:   748 MYGMDLSNNELSGVIPTELGDLLKLRTLNLSHNSLLGSIPSSFSKLIDVESLDLSHNMLQ 807

Query:   653 GKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP-ICRSP 711
             G IP  L  L +LAVF V+ NNLSG IP+   QF TF E SY GN  LCG P    C + 
Sbjct:   808 GSIPQLLSSLTSLAVFDVSSNNLSGIIPQGR-QFNTFEEESYLGNPLLCGPPTSRSCETN 866

Query:   712 ATMSEASIGNERDDNLIDIDSFFITFTTSYVVVIFGI-VIVL 752
              +  EA  G E +D+   ID     F+T+ + V   I V+VL
Sbjct:   867 KSPEEADNGQEEEDDKAAIDMMVFYFSTASIYVTALIGVLVL 908

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
 Identities = 231/668 (34%), Positives = 342/668 (51%)

Query:    66 LDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSI 125
             +  G+C L ++QEL +  N L G LP CL ++T LR+LD+SSN+LTG++ SS L  L S+
Sbjct:   236 IQSGICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSS-LGSLQSL 294

Query:   126 EELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSG 185
             E L L +N F+   S   L N S L +    +     ++  S S   P FQL  ++L S 
Sbjct:   295 EYLSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVL-SESSWKPKFQLSVIALRSC 353

Query:   186 YGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPI 245
               + V  P FL HQ DL  V LS  N+ G+ P+WLL NNTKL+ L L N+  T  F++P 
Sbjct:   354 NMEKV--PHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNNLFTS-FQIPK 410

Query:   246 HSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDL 305
              +H  L FLDVS N+F    P  IG I P L   N S N    ++PSS GNMN +Q +DL
Sbjct:   411 SAHNLL-FLDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDL 469

Query:   306 SNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQ 365
             S N   G +P      C ++  L LS+N L G +F  + N TN+  L ++ N   G+I Q
Sbjct:   470 SRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIGQ 529

Query:   366 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILD 425
              L    +LE L ++NN+L+G IP W+G L  L  +++ +N L+G IP+      SLQ+LD
Sbjct:   530 GLRSLINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLD 589

Query:   426 ISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPN 485
             +S N++SG +P      +   + L  N L G +   T    +++  LDL  NR +G IP 
Sbjct:   590 LSANSLSGVIPPQHDSRNGVVLLLQDNKLSGTIP-DTLL--ANVEILDLRNNRFSGKIPE 646

Query:   486 WVDGLSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGPIPPCFDNTTLHESSN 545
             +++ +  +S L+L  NN  G++P                   +G IP C  NT+      
Sbjct:   647 FIN-IQNISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGFGKE 705

Query:   546 -NSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSL--LSGLDLSC-- 600
               SY    F  S   D   +     +H++F  + KN   IY   +L+L  LS +D     
Sbjct:   706 CTSYDYD-FGISFPSD---VFNGFSLHQDFS-SNKN-GGIYFKSLLTLDPLS-MDYKAAT 758

Query:   601 -NKL---IGHIPPQI--GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGK 654
               K+     H       GNL  +  ++LS N L+G IP  F  L  + +L+LS+N L+G 
Sbjct:   759 QTKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGV 818

Query:   655 IPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATM 714
             IP  +  ++ +  F +++N L G IP    +  + +      N  L G+ +P  R   T 
Sbjct:   819 IPKSISSMEKMESFDLSFNRLQGRIPSQLTELTSLSVFKVSHNN-LSGV-IPQGRQFNTF 876

Query:   715 -SEASIGN 721
              +E+  GN
Sbjct:   877 DAESYFGN 884

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 640 (230.4 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 221/719 (30%), Positives = 342/719 (47%)

Query:    15 FPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLM 74
             F  F +L HLD+  +   +    +     ++ SL+ L +  + L   +  I  Q L SL+
Sbjct:    91 FGRFDNLIHLDLS-SNNLVGP--IPTALSNLTSLESLFLFSNQL---TGEIPSQ-LGSLV 143

Query:    75 HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH 134
             +++ L I +N+L G +P  L N+ +L++L ++S +LTG I S  L  L  ++ L+L +N+
Sbjct:   144 NIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQ-LGRLVRVQSLILQDNY 202

Query:   135 FQIPISLEPLFNHSRLKIFDAANN----EIKAEITE----------SHSLTA--PN---- 174
              + PI  E L N S L +F AA N     I AE+            ++SLT   P+    
Sbjct:   203 LEGPIPAE-LGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGE 261

Query:   175 -FQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPN--WLLENNTKLRQLY 231
               QLQ LSL +    G+  PK L    +L+ + LS  N+ GE P   W   N ++L  L 
Sbjct:   262 MSQLQYLSLMANQLQGL-IPKSLADLGNLQTLDLSANNLTGEIPEEFW---NMSQLLDLV 317

Query:   232 LVNDSLTGPFRLPIHSHRW-LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSI 290
             L N+ L+G     I S+   L  L +S     G IPVE+     SL   ++S N+L  SI
Sbjct:   318 LANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKC-QSLKQLDLSNNSLAGSI 376

Query:   291 PSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLR 350
             P +   +  L  L L NN L G +   ++ +  NL++L L +NNL+G +      L  L 
Sbjct:   377 PEALFELVELTDLYLHNNTLEGTLSPSIS-NLTNLQWLVLYHNNLEGKLPKEISALRKLE 435

Query:   351 SLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGP 410
              L L  N   GEIPQ +  C+SL+ + +  N   G+IP  +G L  L  + + +N L G 
Sbjct:   436 VLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGG 495

Query:   411 IPVGFCQLYSLQILDISDNNISGSLPSCFHPLS-IEQVHLSKNMLHGQLKRGTFFHCSSL 469
             +P      + L ILD++DN +SGS+PS F  L  +EQ+ L  N L G L   +     +L
Sbjct:   496 LPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLP-DSLISLRNL 554

Query:   470 VTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHG 529
               ++LS+NRLNG+I       S LS  +  +N  E E+P+                   G
Sbjct:   555 TRINLSHNRLNGTIHPLCGSSSYLSFDVT-NNGFEDEIPLELGNSQNLDRLRLGKNQLTG 613

Query:   530 PIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKV 589
              IP       + E S    S      ++ +  ++      I  N  F +  I   + GK 
Sbjct:   614 KIPWTLGK--IRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPP-WLGK- 669

Query:   590 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 649
             LS L  L LS N+ +  +P ++ N T++  L+L  N+L G IP    NL  +  L+L  N
Sbjct:   670 LSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKN 729

Query:   650 KLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNES-SYEGNTFLCGLPLPI 707
             + +G +P  + +L  L    ++ N+L+GEIP    Q      +     N F   +P  I
Sbjct:   730 QFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTI 788

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 656 (236.0 bits), Expect = 1.9e-63, P = 1.9e-63
 Identities = 208/688 (30%), Positives = 313/688 (45%)

Query:    45 MPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILD 104
             + ++ YL + ++ L  +    + + +C    L  +  D N+L G +P CL ++  L++  
Sbjct:   143 LKNIFYLDLRNNLLSGD----VPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFV 198

Query:   105 VSSNQLTGSISSSPLVHLTSIEELMLSNNHF--QIPISLEPLFNHSRLKIFD-AANNEIK 161
              + N LTGSI  S +  L ++ +L LS N    +IP     L N   L + +     +I 
Sbjct:   199 AAGNHLTGSIPVS-IGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIP 257

Query:   162 AEITESHSLTAPNFQLQALSLSSGYGDGVT--FPKFLYHQHDLEDVRLSHVNMDGEFPNW 219
             AEI    SL     QL+       Y + +T   P  L +   L+ +R+    +    P+ 
Sbjct:   258 AEIGNCSSLV----QLEL------YDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSS 307

Query:   220 LLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISF 279
             L    T+L  L L  + L GP    I     L  L + +NNF G  P  I + L +L   
Sbjct:   308 LFRL-TQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITN-LRNLTVL 365

Query:   280 NISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHM 339
              +  N +   +P+  G +  L+ L   +N LTG IP  ++ +C  L+ L LS+N + G +
Sbjct:   366 TVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSIS-NCTGLKLLDLSHNQMTGEI 424

Query:   340 FSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKH 399
               R F   NL  + +  NH  GEIP  +  CS+LE L + +N+L+G +   +G L  L+ 
Sbjct:   425 -PRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRI 483

Query:   400 IIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQ-VHLSKNMLHGQL 458
             + +  N L GPIP     L  L IL +  N  +G +P     L++ Q + +  N L G +
Sbjct:   484 LQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPI 543

Query:   459 KRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXXX 518
                  F    L  LDLS N+ +G IP     L  L++L L  N   G +P          
Sbjct:   544 PE-EMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLN 602

Query:   519 XXXXXXXXXHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEK-QIHENFEFT 577
                       G IP       L  S  N      F  +L+  +  IP E  ++    E  
Sbjct:   603 TFDISDNLLTGTIPG-----ELLASLKNMQLYLNFSNNLLTGT--IPKELGKLEMVQEID 655

Query:   578 TKNIAYIYQGKVLSLLSG------LDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGL 630
               N   ++ G +   L        LD S N L GHIP ++   +  I +LNLS N+ +G 
Sbjct:   656 LSN--NLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGE 713

Query:   631 IPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFN 690
             IP +F N+ H+ SLDLS N L G+IP  L  L TL    +A NNL G +PE +  F   N
Sbjct:   714 IPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPE-SGVFKNIN 772

Query:   691 ESSYEGNTFLCGLPLPICRSPATMSEAS 718
              S   GNT LCG   P+   P T+ + S
Sbjct:   773 ASDLMGNTDLCGSKKPL--KPCTIKQKS 798

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 634 (228.2 bits), Expect = 4.0e-61, P = 4.0e-61
 Identities = 210/671 (31%), Positives = 319/671 (47%)

Query:    62 SSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVH 121
             S RI D+ +  L  L++L + +N   G++P  LA  T L  + +  N L+G +  + + +
Sbjct:    81 SGRISDR-ISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLPPA-MRN 138

Query:   122 LTSIEELMLSNNHF--QIPISLEPLFNHSRLKIFDAANNEIKAEITES-HSLTAPNFQLQ 178
             LTS+E   ++ N    +IP+ L P    S L+  D ++N    +I     +LT    QLQ
Sbjct:   139 LTSLEVFNVAGNRLSGEIPVGL-P----SSLQFLDISSNTFSGQIPSGLANLT----QLQ 189

Query:   179 ALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLT 238
              L+LS     G   P  L +   L+ + L    + G  P+  + N + L  L    + + 
Sbjct:   190 LLNLSYNQLTG-EIPASLGNLQSLQYLWLDFNLLQGTLPS-AISNCSSLVHLSASENEIG 247

Query:   239 GPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSI-PSSFGNM 297
             G       +   L  L +SNNNF G +P  +     SL    +  NA    + P +  N 
Sbjct:   248 GVIPAAYGALPKLEVLSLSNNNFSGTVPFSLF-CNTSLTIVQLGFNAFSDIVRPETTANC 306

Query:   298 NF-LQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEG 356
                LQ+LDL  N+++G  P  L  + ++L+ L +S N   G +     NL  L  L+L  
Sbjct:   307 RTGLQVLDLQENRISGRFPLWLT-NILSLKNLDVSGNLFSGEIPPDIGNLKRLEELKLAN 365

Query:   357 NHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFC 416
             N L GEIP  + +C SL+ L    NSL G+IP +LG +  LK + +  N   G +P    
Sbjct:   366 NSLTGEIPVEIKQCGSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMV 425

Query:   417 QLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLS 475
              L  L+ L++ +NN++GS P     L S+ ++ LS N   G +   +  + S+L  L+LS
Sbjct:   426 NLQQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPV-SISNLSNLSFLNLS 484

Query:   476 YNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGPIPPCF 535
              N  +G IP  V  L +L+ L L   N+ GEVPV                   G +P  F
Sbjct:   485 GNGFSGEIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGF 544

Query:   536 DN-TTLH--ESSNNSYSLKPFET--------SLVMD----SMMIPAEK---QIHENFEFT 577
              +  +L     S+NS+S +  +T        SL +     S  IP E       E  E  
Sbjct:   545 SSLVSLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSALEVLELR 604

Query:   578 TKNIAYIYQGKVLSL--LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTF 635
             +  +       +  L  L  LDL  N L G IPP+I   + + +L+L HN+L+G+IP +F
Sbjct:   605 SNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSF 664

Query:   636 SNLKHIESLDLSYNKLNGKIPHQLVELKT-LAVFSVAYNNLSGEIPEWTAQFATFNESSY 694
             S L ++  +DLS N L G+IP  L  + + L  F+V+ NNL GEIP         N S +
Sbjct:   665 SGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASLGSRIN-NTSEF 723

Query:   695 EGNTFLCGLPL 705
              GNT LCG PL
Sbjct:   724 SGNTELCGKPL 734

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	788
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-62
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-48
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-35
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	5e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  225 bits (576), Expect = 3e-62
 Identities = 191/676 (28%), Positives = 306/676 (45%), Gaps = 114/676 (16%)

Query: 48  LKYLSMSDST---------LGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMT 98
           LKYLS  +S+            NSSR+             + +   ++ G +   +  + 
Sbjct: 45  LKYLSNWNSSADVCLWQGITCNNSSRV-----------VSIDLSGKNISGKISSAIFRLP 93

Query: 99  SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANN 158
            ++ +++S+NQL+G I        +S+  L LSNN+F   I    + N   L+  D +NN
Sbjct: 94  YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN---LETLDLSNN 150

Query: 159 EIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPN 218
            +  EI            L+ L L                             + G+ PN
Sbjct: 151 MLSGEIPNDIGSF---SSLKVLDLGGNV-------------------------LVGKIPN 182

Query: 219 WLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLIS 278
            L  N T L  L L ++ L G     +   + L+++ +  NN  G IP EIG  L SL  
Sbjct: 183 SL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNH 240

Query: 279 FNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGH 338
            ++  N L   IPSS GN+  LQ L L  N+L+G IP  +                    
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI-------------------- 280

Query: 339 MFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLK 398
                F+L  L SL L  N L GEIP+ + +  +LE L+L +N+ +GKIP  L +L  L+
Sbjct: 281 -----FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQ 335

Query: 399 HIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCF-HPLSIEQVHLSKNMLHGQ 457
            + +  N   G IP    +  +L +LD+S NN++G +P       ++ ++ L  N L G+
Sbjct: 336 VLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE 395

Query: 458 LKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQL 517
           + + +   C SL  + L  N  +G +P+    L  +  L + +NNL+G +  +  ++  L
Sbjct: 396 IPK-SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL 454

Query: 518 QLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFT 577
           Q+L L+ N   G +P  F           S  L+  + S    S  +P         +  
Sbjct: 455 QMLSLARNKFFGGLPDSF----------GSKRLENLDLSRNQFSGAVPR--------KLG 496

Query: 578 TKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSN 637
           +           LS L  L LS NKL G IP ++ +  ++ +L+LSHN L+G IP++FS 
Sbjct: 497 S-----------LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSE 545

Query: 638 LKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGN 697
           +  +  LDLS N+L+G+IP  L  +++L   ++++N+L G +P  T  F   N S+  GN
Sbjct: 546 MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS-TGAFLAINASAVAGN 604

Query: 698 TFLCG----LPLPICR 709
             LCG      LP C+
Sbjct: 605 IDLCGGDTTSGLPPCK 620

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  185 bits (470), Expect = 2e-48
 Identities = 157/494 (31%), Positives = 232/494 (46%), Gaps = 62/494 (12%)

Query: 40  IIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTS 99
           I R S+P+L+ L +S++ L    S  +   + S   L+ L +  N L G +P  L N+TS
Sbjct: 134 IPRGSIPNLETLDLSNNML----SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTS 189

Query: 100 LRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNE 159
           L  L ++SNQL G I    L  + S++ + L  N+                      + E
Sbjct: 190 LEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNL---------------------SGE 227

Query: 160 IKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNW 219
           I  EI                 L+S                 L  + L + N+ G  P+ 
Sbjct: 228 IPYEIGG---------------LTS-----------------LNHLDLVYNNLTGPIPS- 254

Query: 220 LLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISF 279
            L N   L+ L+L  + L+GP    I S + L  LD+S+N+  G IP E+   L +L   
Sbjct: 255 SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEIL 313

Query: 280 NISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHM 339
           ++  N     IP +  ++  LQ+L L +N+ +GEIP++L     NL  L LS NNL G +
Sbjct: 314 HLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEI 372

Query: 340 FSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKH 399
                +  NL  L L  N LEGEIP+SL  C SL  + L +NS SG++P     L  +  
Sbjct: 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYF 432

Query: 400 IIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLK 459
           + +  N+L+G I      + SLQ+L ++ N   G LP  F    +E + LS+N   G + 
Sbjct: 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVP 492

Query: 460 RGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQL 519
           R      S L+ L LS N+L+G IP+ +    +L  L L HN L G++P    E+  L  
Sbjct: 493 RK-LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQ 551

Query: 520 LDLSNNNLHGPIPP 533
           LDLS N L G IP 
Sbjct: 552 LDLSQNQLSGEIPK 565

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  143 bits (361), Expect = 5e-35
 Identities = 138/429 (32%), Positives = 210/429 (48%), Gaps = 36/429 (8%)

Query: 47  SLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 106
           SL++L+++ + L     R L Q    +  L+ +Y+  N+L G +P+ +  +TSL  LD+ 
Sbjct: 189 SLEFLTLASNQLVGQIPRELGQ----MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244

Query: 107 SNQLTGSISSSPLVHLTSIEELMLSNNHF--QIPISLEPLFNHSRLKIFDAANNEIKAEI 164
            N LTG I SS L +L +++ L L  N     IP S+   F+  +L   D ++N +  EI
Sbjct: 245 YNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSI---FSLQKLISLDLSDNSLSGEI 300

Query: 165 TE---------SHSLTAPNF------------QLQALSLSSGYGDGVTFPKFLYHQHDLE 203
            E            L + NF            +LQ L L S    G   PK L   ++L 
Sbjct: 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG-EIPKNLGKHNNLT 359

Query: 204 DVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQG 263
            + LS  N+ GE P  L  ++  L +L L ++SL G     + + R LR + + +N+F G
Sbjct: 360 VLDLSTNNLTGEIPEGLC-SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG 418

Query: 264 HIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCV 323
            +P E    LP +   +IS N L   I S   +M  LQ+L L+ N+  G +P+       
Sbjct: 419 ELPSEFTK-LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSK-- 475

Query: 324 NLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSL 383
            LE L LS N   G +  +  +L+ L  L+L  N L GEIP  LS C  L  L L++N L
Sbjct: 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535

Query: 384 SGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLS 443
           SG+IP     +  L  + + +N L G IP     + SL  ++IS N++ GSLPS    L+
Sbjct: 536 SGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLA 595

Query: 444 IEQVHLSKN 452
           I    ++ N
Sbjct: 596 INASAVAGN 604

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 86.0 bits (213), Expect = 2e-17
 Identities = 57/178 (32%), Positives = 82/178 (46%), Gaps = 33/178 (18%)

Query: 592 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL 651
            + GL L    L G IP  I  L  +Q++NLS N++ G IP +  ++  +E LDLSYN  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 652 NGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTA----QFATFNESSYEGNTFLCGLP-LP 706
           NG IP  L +L +L + ++  N+LSG +P          A+FN   +  N  LCG+P L 
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN---FTDNAGLCGIPGLR 535

Query: 707 ICRSPATMSEASIGNERDDNLIDIDSFFITFTTS---YVVVIFGIVIVLYVNSYWRRK 761
            C  P     A IG              I F  S     +VI  +        +W+R+
Sbjct: 536 AC-GPHLSVGAKIG--------------IAFGVSVAFLFLVICAMC-------WWKRR 571

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.9 bits (166), Expect = 1e-11
 Identities = 33/86 (38%), Positives = 52/86 (60%)

Query: 352 LQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPI 411
           L L+   L G IP  +SK   L+ + L+ NS+ G IP  LG++T L+ + +  N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 412 PVGFCQLYSLQILDISDNNISGSLPS 437
           P    QL SL+IL+++ N++SG +P+
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.4 bits (162), Expect = 3e-11
 Identities = 39/114 (34%), Positives = 53/114 (46%), Gaps = 26/114 (22%)

Query: 254 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGE 313
           L + N   +G IP +I   L  L S N+S N++  +IP S G++  L++LDLS N   G 
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 314 IPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSL 367
           IPE L                           LT+LR L L GN L G +P +L
Sbjct: 482 IPESLG-------------------------QLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.4 bits (162), Expect = 3e-11
 Identities = 35/85 (41%), Positives = 49/85 (57%)

Query: 328 LALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKI 387
           L L N  L+G + +    L +L+S+ L GN + G IP SL   +SLE L L+ NS +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 388 PRWLGNLTGLKHIIMPENHLEGPIP 412
           P  LG LT L+ + +  N L G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.8 bits (158), Expect = 1e-10
 Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 1/94 (1%)

Query: 299 FLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNH 358
           F+  L L N  L G IP  ++    +L+ + LS N+++G++     ++T+L  L L  N 
Sbjct: 419 FIDGLGLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS 477

Query: 359 LEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 392
             G IP+SL + +SL  L LN NSLSG++P  LG
Sbjct: 478 FNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.3 bits (154), Expect = 3e-10
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 230 LYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSS 289
           L L N  L G     I   R L+ +++S N+ +G+IP  +G I  SL   ++S N+ + S
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGS 481

Query: 290 IPSSFGNMNFLQILDLSNNQLTGEIPEHL 318
           IP S G +  L+IL+L+ N L+G +P  L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.6 bits (147), Expect = 2e-09
 Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 24/105 (22%)

Query: 407 LEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHC 466
           L G IP    +L  LQ +++S N+I G++P                        G+    
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL---------------------GSI--- 465

Query: 467 SSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQL 511
           +SL  LDLSYN  NGSIP  +  L+ L  L L  N+L G VP  L
Sbjct: 466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.0 bits (135), Expect = 6e-08
 Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 24/118 (20%)

Query: 373 LEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNIS 432
           ++GL L+N  L G IP  +  L  L+ I +  N + G IP     + SL++LD+S N+ +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 433 GSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGL 490
           GS+P                   GQL        +SL  L+L+ N L+G +P  + G 
Sbjct: 480 GSIPESL----------------GQL--------TSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.2 bits (133), Expect = 9e-08
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 73  LMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 132
           L HLQ + +  N +RG++P  L ++TSL +LD+S N   GSI  S L  LTS+  L L+ 
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNG 499

Query: 133 NHF--QIPISL 141
           N    ++P +L
Sbjct: 500 NSLSGRVPAAL 510

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 48.7 bits (117), Expect = 1e-07
 Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 596 LDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL 651
           LDLS N+L   IP      L  ++ L+LS NNLT + P  FS L  + SLDLS N L
Sbjct: 5   LDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.9 bits (127), Expect = 5e-07
 Identities = 37/156 (23%), Positives = 59/156 (37%), Gaps = 59/156 (37%)

Query: 479 LNGSIPNW-VDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDN 537
            + +   W +DGL       L +  L G +P  + +L  LQ ++LS N++ G IPP   +
Sbjct: 411 FDSTKGKWFIDGLG------LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS 464

Query: 538 TTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLD 597
                                                               ++ L  LD
Sbjct: 465 ----------------------------------------------------ITSLEVLD 472

Query: 598 LSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPS 633
           LS N   G IP  +G LT ++ LNL+ N+L+G +P+
Sbjct: 473 LSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.1 bits (125), Expect = 8e-07
 Identities = 26/78 (33%), Positives = 45/78 (57%)

Query: 469 LVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLH 528
           L +++LS N + G+IP  +  ++ L  L L +N+  G +P  L +L  L++L+L+ N+L 
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 529 GPIPPCFDNTTLHESSNN 546
           G +P       LH +S N
Sbjct: 504 GRVPAALGGRLLHRASFN 521

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 616 RIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNL 675
            +++L+LS+N LT +    F  L +++ LDLS N L    P     L +L    ++ NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 49.6 bits (118), Expect = 4e-06
 Identities = 67/255 (26%), Positives = 120/255 (47%), Gaps = 9/255 (3%)

Query: 274 PSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNN 333
            S  +++ +  +++ + P S      +  L L+ +  T  +        ++L+ L+ S  
Sbjct: 21  LSSNTYHTTPQSINLNFPDSNLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGI 80

Query: 334 NLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGN 393
           +      +   NL  L SL L  N L   I   L + ++L  L L+NN+++  IP  +G 
Sbjct: 81  SSLDGSENLL-NLLPLPSLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGL 137

Query: 394 LT-GLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKN 452
           L   LK + + +N +E  +P     L +L+ LD+S N++S       +  ++  + LS N
Sbjct: 138 LKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGN 196

Query: 453 MLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLC 512
            +            S+L  LDLS N +   + + +  L  LS L L +N LE ++P  + 
Sbjct: 197 KI--SDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIG 252

Query: 513 ELNQLQLLDLSNNNL 527
            L+ L+ LDLSNN +
Sbjct: 253 NLSNLETLDLSNNQI 267

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 48.9 bits (117), Expect = 5e-06
 Identities = 63/254 (24%), Positives = 93/254 (36%), Gaps = 70/254 (27%)

Query: 300 LQILDLSNNQLTGEIPEHLAV------SCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQ 353
           L+ L LS N+ TG IP  L            L+ L LS+N                 +L 
Sbjct: 53  LKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDN-----------------ALG 94

Query: 354 LEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPV 413
            +G      + +SL + SSL+ L LNNN L  +  R L    GLK +             
Sbjct: 95  PDGCG----VLESLLRSSSLQELKLNNNGLGDRGLRLLA--KGLKDLPPA---------- 138

Query: 414 GFCQLYSLQILDISDNNISGSLPSCF-------HPLSIEQVHLSKNMLHGQ----LKRGT 462
                  L+ L +  N + G+  SC            +++++L+ N +       L  G 
Sbjct: 139 -------LEKLVLGRNRLEGA--SCEALAKALRANRDLKELNLANNGIGDAGIRALAEG- 188

Query: 463 FFHCSSLVTLDLSYNRLN----GSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCE----- 513
                +L  LDL+ N L      ++   +  L  L  L LG NNL       L       
Sbjct: 189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSP 248

Query: 514 LNQLQLLDLSNNNL 527
              L  L LS N++
Sbjct: 249 NISLLTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.1 bits (105), Expect = 6e-06
 Identities = 26/60 (43%), Positives = 29/60 (48%)

Query: 468 SLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNL 527
           +L +LDLS NRL         GL  L  L L  NNL    P     L  L+ LDLS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.0 bits (117), Expect = 8e-06
 Identities = 23/61 (37%), Positives = 33/61 (54%)

Query: 472 LDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPI 531
           L L    L G IPN +  L  L  + L  N++ G +P  L  +  L++LDLS N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 532 P 532
           P
Sbjct: 483 P 483

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.7 bits (104), Expect = 8e-06
 Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 447 VHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNL 503
           + LS N L   +  G F    +L  LDLS N L    P    GL  L  L L  NNL
Sbjct: 5   LDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 5e-05
 Identities = 17/60 (28%), Positives = 28/60 (46%)

Query: 348 NLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHL 407
           NL+SL L  N L      +     +L+ L L+ N+L+   P     L  L+ + +  N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 30/63 (47%), Positives = 36/63 (57%), Gaps = 7/63 (11%)

Query: 300 LQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKG---HMFSRNFNLTNLRSLQLEG 356
           L+ LDLSNN+LT  IP+       NL+ L LS NNL       FS    L +LRSL L G
Sbjct: 2   LKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFS---GLPSLRSLDLSG 57

Query: 357 NHL 359
           N+L
Sbjct: 58  NNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 49/210 (23%), Positives = 79/210 (37%), Gaps = 38/210 (18%)

Query: 289 SIPSSFGNMNFLQILDLSNNQLTGEIPEHLA--VSCVNLEFLALSNNNL---KGHMFSRN 343
           S+         LQ LDLS+N L  +    L   +   +L+ L L+NN L      + ++ 
Sbjct: 72  SLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG 131

Query: 344 F--NLTNLRSLQLEGNHLEGE----IPQSLSKCSSLEGLYLNNNSLSG----KIPRWLGN 393
                  L  L L  N LEG     + ++L     L+ L L NN +       +   L  
Sbjct: 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKA 191

Query: 394 LTGLKHIIMPENHLE----GPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHL 449
              L+ + +  N L       +      L SL++L++ DNN+     +           L
Sbjct: 192 NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL-TDAGAA---------AL 241

Query: 450 SKNMLHGQLKRGTFFHCSSLVTLDLSYNRL 479
           +  +L             SL+TL LS N +
Sbjct: 242 ASALLSPN---------ISLLTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 372 SLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNI 431
           +L+ L L+NN L+         L  LK + +  N+L    P  F  L SL+ LD+S NN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 75  HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH 134
           +L+ L + NN L          + +L++LD+S N LT SIS      L S+  L LS N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 135 F 135
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 6/63 (9%)

Query: 324 NLEFLALSNNNLKG---HMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNN 380
           NL+ L LSNN L       F     L NL+ L L GN+L    P++ S   SL  L L+ 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAF---KGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSG 57

Query: 381 NSL 383
           N+L
Sbjct: 58  NNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQL 310
           L+ LD+SNN     IP      LP+L   ++S N L S  P +F  +  L+ LDLS N L
Sbjct: 2   LKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 7e-04
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 275 SLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNN 334
           +L S ++S N L      +F  +  L++LDLS N LT  I         +L  L LS NN
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 335 L 335
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 11/153 (7%)

Query: 44  SMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLR----GSLPWCLANMTS 99
           +   LK L+++++ +G    R L +GL +  +L+ L ++NN L      +L   LA++ S
Sbjct: 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS 222

Query: 100 LRILDVSSNQLTG----SISSSPLVHLTSIEELMLSNNHFQIPIS---LEPLFNHSRLKI 152
           L +L++  N LT     +++S+ L    S+  L LS N      +    E L     L  
Sbjct: 223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLE 282

Query: 153 FDAANNEIKAEITESHSLTAPNFQLQALSLSSG 185
            D   N+   E  +  + +      +  SL   
Sbjct: 283 LDLRGNKFGEEGAQLLAESLLEPGNELESLWVK 315

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	788
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.82
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.74
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.6
PLN03150	623	hypothetical protein; Provisional	99.47
PLN03150	623	hypothetical protein; Provisional	99.16
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.14
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.13
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.12
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.09
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.08
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.04
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.03
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.02
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.02
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.01
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.98
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.94
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.93
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.92
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.91
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.9
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.8
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.78
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.55
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.46
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.44
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.44
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.3
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.23
KOG4341	483	consensus F-box protein containing LRR [General fu	98.18
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.17
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.03
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.0
KOG4341	483	consensus F-box protein containing LRR [General fu	97.99
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.96
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.94
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.93
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.92
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.9
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.82
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.8
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.7
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.7
PRK15386	426	type III secretion protein GogB; Provisional	97.63
PRK15386	426	type III secretion protein GogB; Provisional	97.36
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.17
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.04
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.98
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.9
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.88
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.61
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.57
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.31
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	93.51
KOG4308	478	consensus LRR-containing protein [Function unknown	93.17
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.44
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.6
smart00370	26	LRR Leucine-rich repeats, outliers.	91.6
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.26
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.25
smart00370	26	LRR Leucine-rich repeats, outliers.	91.25
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.04
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.48
KOG4308	478	consensus LRR-containing protein [Function unknown	88.56
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	87.25
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.25

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=8.1e-61  Score=576.78  Aligned_cols=541  Identities=33%  Similarity=0.496  Sum_probs=393.6

Q ss_pred             CCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEE
Q 003888           75 HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFD  154 (788)
Q Consensus        75 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~  154 (788)
                      +++.|+|++|.+++.+|..|..+++|++|+|++|++.+.+|...+.++++|++|++++|.+.+.+|.   +.+++|++|+
T Consensus        70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~  146 (968)
T PLN00113         70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLD  146 (968)
T ss_pred             cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEE
Confidence            4555555555555555555555555555555555555555553344555555555555555544442   2344555555


Q ss_pred             ccCccccccccccccCCCCcccccEEEccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCC
Q 003888          155 AANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVN  234 (788)
Q Consensus       155 l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~  234 (788)
                      +++|.+.                            +.+|..+..+++|++|++++|.+.+.+|..+ .++++|++|++++
T Consensus       147 Ls~n~~~----------------------------~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~  197 (968)
T PLN00113        147 LSNNMLS----------------------------GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLAS  197 (968)
T ss_pred             CcCCccc----------------------------ccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccC
Confidence            5544432                            2234444555566666666666555555554 4566666666666


Q ss_pred             CcccccCccCcCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCcc
Q 003888          235 DSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEI  314 (788)
Q Consensus       235 ~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i  314 (788)
                      |.+++..|..+..+++|+.|++++|.+++.+|..+.. +++|++|++++|.+.+..|..++++++|++|++++|.+.+.+
T Consensus       198 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  276 (968)
T PLN00113        198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI  276 (968)
T ss_pred             CCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC
Confidence            6666666666666666666666666666666655544 566666666666666666666666667777777776666566


Q ss_pred             chHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCC
Q 003888          315 PEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNL  394 (788)
Q Consensus       315 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l  394 (788)
                      |..+. .+++|++|++++|.+.+..+..+.++++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..|..+..+
T Consensus       277 p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~  355 (968)
T PLN00113        277 PPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH  355 (968)
T ss_pred             chhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC
Confidence            66554 46667777777776666666666666677777777777666666666667777777777777666666666667


Q ss_pred             CCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCC-CCCccEEEccCcccccccCcccccCCCCCcEEE
Q 003888          395 TGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLD  473 (788)
Q Consensus       395 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  473 (788)
                      ++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+. +++|+.|++++|.+.+.+|.. +..+++|+.|+
T Consensus       356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~  434 (968)
T PLN00113        356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE-FTKLPLVYFLD  434 (968)
T ss_pred             CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChh-HhcCCCCCEEE
Confidence            7777777777777666666666667777777777776666555443 566777777777776666655 88899999999


Q ss_pred             ccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCc
Q 003888          474 LSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPF  553 (788)
Q Consensus       474 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (788)
                      +++|.+++..+..+..+++|+.|++++|++.+..|..+ ..++|+.|++++|++.+..|..+..                
T Consensus       435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~----------------  497 (968)
T PLN00113        435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGS----------------  497 (968)
T ss_pred             CcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhh----------------
Confidence            99999999999888899999999999999998887755 4689999999999999888776654                


Q ss_pred             ccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCc
Q 003888          554 ETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPS  633 (788)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~  633 (788)
                                                          +++|+.|++++|.+.+.+|..+.++++|++|+|++|.+++.+|.
T Consensus       498 ------------------------------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  541 (968)
T PLN00113        498 ------------------------------------LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA  541 (968)
T ss_pred             ------------------------------------hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCCh
Confidence                                                45899999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCCcccccCCCCccccCCCCCCCCCC
Q 003888          634 TFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP  704 (788)
Q Consensus       634 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~gn~~~c~~~  704 (788)
                      .|+++++|+.|++++|++++.+|..+..+++|+.+++++|++.|.+|.. +++.++....+.||+.+|+.+
T Consensus       542 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        542 SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             hHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccccCCc
Confidence            9999999999999999999999999999999999999999999999984 778888889999999999754

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=8.5e-57  Score=541.91  Aligned_cols=521  Identities=32%  Similarity=0.513  Sum_probs=479.5

Q ss_pred             CCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCccccccccccccCCCCccc
Q 003888           97 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQ  176 (788)
Q Consensus        97 l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  176 (788)
                      ..+++.|||++|.+.+.++. .+..+++|++|++++|.+.+.+|...+..+++|++|++++|.+.+.             
T Consensus        68 ~~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~-------------  133 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKISS-AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS-------------  133 (968)
T ss_pred             CCcEEEEEecCCCccccCCh-HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccc-------------
Confidence            35799999999999988877 8999999999999999999888876677999999999999876532             


Q ss_pred             ccEEEccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCCCCccEEEc
Q 003888          177 LQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDV  256 (788)
Q Consensus       177 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  256 (788)
                                     +|.  ..+++|++|++++|.+.+.+|..+ +++++|++|++++|.+.+..|..+.++++|++|++
T Consensus       134 ---------------~p~--~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  195 (968)
T PLN00113        134 ---------------IPR--GSIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL  195 (968)
T ss_pred             ---------------cCc--cccCCCCEEECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence                           221  246789999999999999898876 78999999999999999999999999999999999


Q ss_pred             ccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCC
Q 003888          257 SNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLK  336 (788)
Q Consensus       257 ~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~  336 (788)
                      ++|.+.+.+|..+.. +++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+. .+++|++|++++|.++
T Consensus       196 ~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~  273 (968)
T PLN00113        196 ASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLS  273 (968)
T ss_pred             cCCCCcCcCChHHcC-cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh-CCCCCCEEECcCCeee
Confidence            999999888988776 79999999999999999999999999999999999999988888776 7999999999999999


Q ss_pred             CcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCcccccc
Q 003888          337 GHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFC  416 (788)
Q Consensus       337 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  416 (788)
                      +..+..+.++++|++|++++|.+.+..|..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+.
T Consensus       274 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~  353 (968)
T PLN00113        274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG  353 (968)
T ss_pred             ccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh
Confidence            88888899999999999999999999999999999999999999999989999999999999999999999999999999


Q ss_pred             CCCCccEEEccCCcCCCCCCCCCC-CCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCE
Q 003888          417 QLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSH  495 (788)
Q Consensus       417 ~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  495 (788)
                      .+++|+.|++++|++.+..|..+. ..+++.+++.+|.+.+.+|.. +..+++|+.|++++|.+++..|..+..+++|+.
T Consensus       354 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  432 (968)
T PLN00113        354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS-LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYF  432 (968)
T ss_pred             CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHH-HhCCCCCCEEECcCCEeeeECChhHhcCCCCCE
Confidence            999999999999999887776654 678999999999998888876 889999999999999999999999999999999


Q ss_pred             EEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhcccccee
Q 003888          496 LILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFE  575 (788)
Q Consensus       496 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  575 (788)
                      |++++|.+++..+..+..+++|+.|++++|++.+..|..+.                                       
T Consensus       433 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~---------------------------------------  473 (968)
T PLN00113        433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG---------------------------------------  473 (968)
T ss_pred             EECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc---------------------------------------
Confidence            99999999999998899999999999999999877665432                                       


Q ss_pred             eeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccC
Q 003888          576 FTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI  655 (788)
Q Consensus       576 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  655 (788)
                                    .++|+.|++++|++++..|..+.++++|+.|+|++|++++.+|..+.++++|++|++++|.+++.+
T Consensus       474 --------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  539 (968)
T PLN00113        474 --------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI  539 (968)
T ss_pred             --------------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccC
Confidence                          237999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccCCCCCCEEEccCCcCcccCCCcccccCCCCccccCCCCCCCCCCC
Q 003888          656 PHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL  705 (788)
Q Consensus       656 p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~gn~~~c~~~l  705 (788)
                      |..+..+++|+.|++++|++++.+|..+..+..+..+++.+|++.+..|.
T Consensus       540 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        540 PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             ChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence            99999999999999999999999999988999999999999999886653

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=8.6e-43  Score=352.77  Aligned_cols=394  Identities=26%  Similarity=0.315  Sum_probs=267.7

Q ss_pred             EEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccC
Q 003888          253 FLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSN  332 (788)
Q Consensus       253 ~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~  332 (788)
                      .||+++|++. .+....+..+++|+++++.+|.++ .+|.......+|+.|+|.+|.|+ ++.......++.|+.|||+.
T Consensus        82 ~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   82 TLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             eeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhh
Confidence            3455555444 333333333455555555555444 33433333333555555555554 33333333344555555555


Q ss_pred             ccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCcc
Q 003888          333 NNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIP  412 (788)
Q Consensus       333 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  412 (788)
                      |.|+.+....|..-.++++|+|++|+|+......|..+.+|..|.|++|+++...+..|.+++.|+.|++..|+|.-..-
T Consensus       159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~  238 (873)
T KOG4194|consen  159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG  238 (873)
T ss_pred             chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence            55554444444444455555555555554444455555555555555555554444444445555555555555442223


Q ss_pred             ccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCC
Q 003888          413 VGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQ  492 (788)
Q Consensus       413 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  492 (788)
                      -.|.++++|+.|.+..|.+.                        .+..++|..|.++++|+|+.|++...-..|+-++++
T Consensus       239 ltFqgL~Sl~nlklqrN~I~------------------------kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~  294 (873)
T KOG4194|consen  239 LTFQGLPSLQNLKLQRNDIS------------------------KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTS  294 (873)
T ss_pred             hhhcCchhhhhhhhhhcCcc------------------------cccCcceeeecccceeecccchhhhhhcccccccch
Confidence            34455555555555555443                        556667888899999999999998888888889999


Q ss_pred             CCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhcccc
Q 003888          493 LSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHE  572 (788)
Q Consensus       493 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  572 (788)
                      |+.|++++|.|..+.+++...+++|+.|+|++|+++...+..|..                                   
T Consensus       295 L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~-----------------------------------  339 (873)
T KOG4194|consen  295 LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV-----------------------------------  339 (873)
T ss_pred             hhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH-----------------------------------
Confidence            999999999998888888888899999999999988666655543                                   


Q ss_pred             ceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCC---ccccCCCCCCEEECcCC
Q 003888          573 NFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIP---STFSNLKHIESLDLSYN  649 (788)
Q Consensus       573 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~N  649 (788)
                                       ++.|++|+|++|.+...-...|..+++|++|||++|.|+..+.   ..|.++++|+.|++.+|
T Consensus       340 -----------------L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN  402 (873)
T KOG4194|consen  340 -----------------LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN  402 (873)
T ss_pred             -----------------HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc
Confidence                             4588999999999988778889999999999999999987665   35888999999999999


Q ss_pred             cccccCCccccCCCCCCEEEccCCcCcccCCCcccccCCCCccccCCCCCCCCCCCC-----------------CCCCCC
Q 003888          650 KLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP-----------------ICRSPA  712 (788)
Q Consensus       650 ~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~gn~~~c~~~l~-----------------~c~~~~  712 (788)
                      ++..+.-.+|..++.|+.||+.+|.+...-|..|.++ .++.+.+..-.++|||.+.                 .|..|+
T Consensus       403 qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe  481 (873)
T KOG4194|consen  403 QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPE  481 (873)
T ss_pred             eeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCc
Confidence            9986666889999999999999999998889888888 8888888888999999764                 799999


Q ss_pred             CCCcccCCCCCCCC
Q 003888          713 TMSEASIGNERDDN  726 (788)
Q Consensus       713 ~~~~~~~~~~~~~~  726 (788)
                      ...+.++...+...
T Consensus       482 ~Lad~~i~svd~~~  495 (873)
T KOG4194|consen  482 PLADQSIVSVDTAN  495 (873)
T ss_pred             ccccceeEeechhh
Confidence            98887665554443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-39  Score=329.98  Aligned_cols=392  Identities=24%  Similarity=0.275  Sum_probs=303.9

Q ss_pred             CcEEeCCCCCCCCCCCCCCcccccCCC--CCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCcCChhhhcC-CCC
Q 003888           48 LKYLSMSDSTLGTNSSRILDQGLCSLM--HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVH-LTS  124 (788)
Q Consensus        48 L~~L~Ls~~~l~~~~~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~-l~~  124 (788)
                      -+.||.++..+    ..+....+....  .-+.|++++|++...-+..|.++++|+++++.+|.++ .||.  +++ ..+
T Consensus        54 ~~lldcs~~~l----ea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~--f~~~sgh  126 (873)
T KOG4194|consen   54 TRLLDCSDREL----EAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR--FGHESGH  126 (873)
T ss_pred             ceeeecCcccc----ccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc--ccccccc
Confidence            34567777666    332222222222  2345888888888777777788888888888888887 7777  444 345


Q ss_pred             CCEEECcCccccccCCccccccCCCCcEEEccCccccccccccccCCCCcccccEEEccCCCCCCCCcCccccCCCCCCE
Q 003888          125 IEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLED  204 (788)
Q Consensus       125 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  204 (788)
                      |++|+|.+|.|+ .+..+.+.-++.|+.||++.|.++.                                          
T Consensus       127 l~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~------------------------------------------  163 (873)
T KOG4194|consen  127 LEKLDLRHNLIS-SVTSEELSALPALRSLDLSRNLISE------------------------------------------  163 (873)
T ss_pred             eeEEeeeccccc-cccHHHHHhHhhhhhhhhhhchhhc------------------------------------------
Confidence            778888777766 3344455555555555555554432                                          


Q ss_pred             EEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccC
Q 003888          205 VRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMN  284 (788)
Q Consensus       205 L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n  284 (788)
                                 +|..-+..-.++++|+|++|+++......|..+.+|..|.|++|.++ .+|...|+.+++|+.|+|..|
T Consensus       164 -----------i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN  231 (873)
T KOG4194|consen  164 -----------IPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRN  231 (873)
T ss_pred             -----------ccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhcccc
Confidence                       22211223457888899999998888888889999999999999998 899999998999999999999


Q ss_pred             cCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCC
Q 003888          285 ALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIP  364 (788)
Q Consensus       285 ~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  364 (788)
                      +|.-.....|.++++|+.|.+..|.|. .+.+..|..+.++++|+|..|+++......+.+++.|+.|+++.|.|..+.+
T Consensus       232 ~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~  310 (873)
T KOG4194|consen  232 RIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI  310 (873)
T ss_pred             ceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence            998655668999999999999999998 8888888899999999999999999888889999999999999999999999


Q ss_pred             ccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCc
Q 003888          365 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSI  444 (788)
Q Consensus       365 ~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L  444 (788)
                      +++..+++|++|+|++|+++...+..|..+..|++|.+++|.+......+|..+.+|++||+++|.++..+.+.      
T Consensus       311 d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa------  384 (873)
T KOG4194|consen  311 DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA------  384 (873)
T ss_pred             chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc------
Confidence            99999999999999999999888889999999999999999999887888999999999999999887543321      


Q ss_pred             cEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccC
Q 003888          445 EQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSN  524 (788)
Q Consensus       445 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  524 (788)
                                     ..+|.++++|+.|++.+|++..+...+|.++++|++|+|.+|.|..+.+.+|..+ .|+.|.+..
T Consensus       385 ---------------a~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  385 ---------------AVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             ---------------hhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence                           1236667777777777777776666677777777777777777776777777766 666665543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.1e-40  Score=321.30  Aligned_cols=478  Identities=26%  Similarity=0.385  Sum_probs=264.9

Q ss_pred             CCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCC
Q 003888           46 PSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSI  125 (788)
Q Consensus        46 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L  125 (788)
                      ..++.+++++|.+    ..+.+ .+.++..|.+|++++|+++ .+|.+++.+..++.|+.++|+++ .+|+ +++.+.+|
T Consensus        45 v~l~~lils~N~l----~~l~~-dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~l  116 (565)
T KOG0472|consen   45 VDLQKLILSHNDL----EVLRE-DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPE-QIGSLISL  116 (565)
T ss_pred             cchhhhhhccCch----hhccH-hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccH-HHhhhhhh
Confidence            3566777888877    44443 5778888888888888877 67778888888888888888887 7887 78888888


Q ss_pred             CEEECcCccccccCCccccccCCCCcEEEccCccccccccccccCCCCcccccEEEccCCCCCCCCcCccccCCCCCCEE
Q 003888          126 EELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDV  205 (788)
Q Consensus       126 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  205 (788)
                      ++++.++|.+.. .+ ..++.+..|..++..+|+++.                             .|..++.+.++..+
T Consensus       117 ~~l~~s~n~~~e-l~-~~i~~~~~l~dl~~~~N~i~s-----------------------------lp~~~~~~~~l~~l  165 (565)
T KOG0472|consen  117 VKLDCSSNELKE-LP-DSIGRLLDLEDLDATNNQISS-----------------------------LPEDMVNLSKLSKL  165 (565)
T ss_pred             hhhhccccceee-cC-chHHHHhhhhhhhcccccccc-----------------------------CchHHHHHHHHHHh
Confidence            888888887763 22 245666666666655555432                             24444455555555


Q ss_pred             EcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCc
Q 003888          206 RLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNA  285 (788)
Q Consensus       206 ~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~  285 (788)
                      ++.++++...-|..+  +++.|++|+..                        .|.+. .+|.+++. +.+|.-|++..|+
T Consensus       166 ~~~~n~l~~l~~~~i--~m~~L~~ld~~------------------------~N~L~-tlP~~lg~-l~~L~~LyL~~Nk  217 (565)
T KOG0472|consen  166 DLEGNKLKALPENHI--AMKRLKHLDCN------------------------SNLLE-TLPPELGG-LESLELLYLRRNK  217 (565)
T ss_pred             hccccchhhCCHHHH--HHHHHHhcccc------------------------hhhhh-cCChhhcc-hhhhHHHHhhhcc
Confidence            555555544333322  24444444444                        44443 45555443 4455555555555


Q ss_pred             CCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCc
Q 003888          286 LDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQ  365 (788)
Q Consensus       286 ~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  365 (788)
                      +. ..| .|.+|..|..+.++.|.|. .+|.....+++++..||+..|+++. .|+.++-+.+|++||+++|.++ ..|.
T Consensus       218 i~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is-~Lp~  292 (565)
T KOG0472|consen  218 IR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDIS-SLPY  292 (565)
T ss_pred             cc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCccc-cCCc
Confidence            54 233 4555555666666666555 5555555555556666666666554 3444455555666666666665 4455


Q ss_pred             cccCCCCCCEEEccCCcCCCCCcccccC-----CCCCCE----EeCCCC---c------ccCCccccccCCCCccEEEcc
Q 003888          366 SLSKCSSLEGLYLNNNSLSGKIPRWLGN-----LTGLKH----IIMPEN---H------LEGPIPVGFCQLYSLQILDIS  427 (788)
Q Consensus       366 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~-----l~~L~~----L~l~~n---~------~~~~~~~~~~~l~~L~~L~l~  427 (788)
                      .++++ .|+.|.+.+|++..+-.+.+..     ++.|+.    =.++..   .      ..... .........+.|+++
T Consensus       293 sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~-~~~~~~i~tkiL~~s  370 (565)
T KOG0472|consen  293 SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESF-PDIYAIITTKILDVS  370 (565)
T ss_pred             ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcc-cchhhhhhhhhhccc
Confidence            56665 5666666666553211111110     011111    000000   0      00000 111223445556666


Q ss_pred             CCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCE-EEccCCcCccc
Q 003888          428 DNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSH-LILGHNNLEGE  506 (788)
Q Consensus       428 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~-L~L~~n~l~~~  506 (788)
                      +-+++.++.+.|....                      -.-.+..+++.|++. .+|..+..+..+.+ +.+++|.+. .
T Consensus       371 ~~qlt~VPdEVfea~~----------------------~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-f  426 (565)
T KOG0472|consen  371 DKQLTLVPDEVFEAAK----------------------SEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-F  426 (565)
T ss_pred             ccccccCCHHHHHHhh----------------------hcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-c
Confidence            6555544444443211                      012344555555554 34444433333322 233333333 4


Q ss_pred             cCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeec
Q 003888          507 VPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQ  586 (788)
Q Consensus       507 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (788)
                      +|..++.+++|..|++++|.+.. +|..+..                                                 
T Consensus       427 v~~~l~~l~kLt~L~L~NN~Ln~-LP~e~~~-------------------------------------------------  456 (565)
T KOG0472|consen  427 VPLELSQLQKLTFLDLSNNLLND-LPEEMGS-------------------------------------------------  456 (565)
T ss_pred             chHHHHhhhcceeeecccchhhh-cchhhhh-------------------------------------------------
Confidence            45555555555555555554432 1211111                                                 


Q ss_pred             ccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCC
Q 003888          587 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLA  666 (788)
Q Consensus       587 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  666 (788)
                         +..|+.||++.|.+. ..|..+..+..++.+-.++|++....|+.+.++.+|+.||+.+|.+. .+|..++++++|+
T Consensus       457 ---lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~  531 (565)
T KOG0472|consen  457 ---LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLR  531 (565)
T ss_pred             ---hhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcccccee
Confidence               224556666666555 56666666666676666777777776677777777777777777776 6666777777777


Q ss_pred             EEEccCCcCc
Q 003888          667 VFSVAYNNLS  676 (788)
Q Consensus       667 ~L~l~~N~l~  676 (788)
                      .|+++||++.
T Consensus       532 hLeL~gNpfr  541 (565)
T KOG0472|consen  532 HLELDGNPFR  541 (565)
T ss_pred             EEEecCCccC
Confidence            7777777777

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=5.4e-37  Score=297.72  Aligned_cols=476  Identities=24%  Similarity=0.347  Sum_probs=310.4

Q ss_pred             CCccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCC
Q 003888           19 KSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMT   98 (788)
Q Consensus        19 ~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~   98 (788)
                      .-+..+.+  +.|.+. ++.+.+. ++..|.+|++++|++    .++|+ +++.+..++.|+.++|+++ ++|..+..+.
T Consensus        45 v~l~~lil--s~N~l~-~l~~dl~-nL~~l~vl~~~~n~l----~~lp~-aig~l~~l~~l~vs~n~ls-~lp~~i~s~~  114 (565)
T KOG0472|consen   45 VDLQKLIL--SHNDLE-VLREDLK-NLACLTVLNVHDNKL----SQLPA-AIGELEALKSLNVSHNKLS-ELPEQIGSLI  114 (565)
T ss_pred             cchhhhhh--ccCchh-hccHhhh-cccceeEEEeccchh----hhCCH-HHHHHHHHHHhhcccchHh-hccHHHhhhh
Confidence            34445555  555544 2333444 666666666666666    45554 5666666666666666665 5666666666


Q ss_pred             CCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCccccccccccccCCCCccccc
Q 003888           99 SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQ  178 (788)
Q Consensus        99 ~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~  178 (788)
                      +|++|+.++|.+. ++|+ .++.+..|+.++..+|+++.. | +.+.++.+|..+++.+|.+....+...    ....|+
T Consensus       115 ~l~~l~~s~n~~~-el~~-~i~~~~~l~dl~~~~N~i~sl-p-~~~~~~~~l~~l~~~~n~l~~l~~~~i----~m~~L~  186 (565)
T KOG0472|consen  115 SLVKLDCSSNELK-ELPD-SIGRLLDLEDLDATNNQISSL-P-EDMVNLSKLSKLDLEGNKLKALPENHI----AMKRLK  186 (565)
T ss_pred             hhhhhhcccccee-ecCc-hHHHHhhhhhhhccccccccC-c-hHHHHHHHHHHhhccccchhhCCHHHH----HHHHHH
Confidence            6666666666665 5555 566666666666666666522 2 245556666666666665543222211    112344


Q ss_pred             EEEccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCCCCccEEEccc
Q 003888          179 ALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSN  258 (788)
Q Consensus       179 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~  258 (788)
                      +++.  +....+.+|..++.+.+|+.|++..|++.. .| . |.+|+.|+++++..|++..........++++..||+.+
T Consensus       187 ~ld~--~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~-lP-e-f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd  261 (565)
T KOG0472|consen  187 HLDC--NSNLLETLPPELGGLESLELLYLRRNKIRF-LP-E-FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD  261 (565)
T ss_pred             hccc--chhhhhcCChhhcchhhhHHHHhhhccccc-CC-C-CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc
Confidence            4443  122345677788888888888888887653 45 2 25778888888888887765555566788888888888


Q ss_pred             CcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCC--CCCEE-------E
Q 003888          259 NNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCV--NLEFL-------A  329 (788)
Q Consensus       259 n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~--~L~~L-------~  329 (788)
                      |+++ +.|+++.. +.+|..||+++|.|+ ..|..++++ .|+.|.+.+|.+. +|-..+..+-+  =|++|       .
T Consensus       262 Nklk-e~Pde~cl-LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dg  336 (565)
T KOG0472|consen  262 NKLK-EVPDEICL-LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDG  336 (565)
T ss_pred             cccc-cCchHHHH-hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCC
Confidence            8887 78888776 677888888888887 456668888 7888888888776 44433321100  01111       0


Q ss_pred             ccCccC--------CCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCC---CCCEEEccCCcCCCCCcccccCCCCCC
Q 003888          330 LSNNNL--------KGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCS---SLEGLYLNNNSLSGKIPRWLGNLTGLK  398 (788)
Q Consensus       330 L~~n~i--------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~---~L~~L~L~~n~i~~~~~~~~~~l~~L~  398 (788)
                      ++..+-        ............+.+.|++++-+++ .+|+....-.   -.+..+++.|++. +.|..+..+..+.
T Consensus       337 lS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelv  414 (565)
T KOG0472|consen  337 LSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELV  414 (565)
T ss_pred             CCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHH
Confidence            111100        0011112224556788888888888 4554433323   3778888888886 6676666655544


Q ss_pred             E-EeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCC
Q 003888          399 H-IIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYN  477 (788)
Q Consensus       399 ~-L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n  477 (788)
                      + +.+++|.+. .+|..++.+++|..|++++|.+...+.+.+....|+.++++.|++ ..+|.- ......++.+-.++|
T Consensus       415 T~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrF-r~lP~~-~y~lq~lEtllas~n  491 (565)
T KOG0472|consen  415 TDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRF-RMLPEC-LYELQTLETLLASNN  491 (565)
T ss_pred             HHHHhhcCccc-cchHHHHhhhcceeeecccchhhhcchhhhhhhhhheeccccccc-ccchHH-HhhHHHHHHHHhccc
Confidence            4 444555444 677778888888888888888877666666677788888888877 344443 444456777777889


Q ss_pred             cCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCC
Q 003888          478 RLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLH  528 (788)
Q Consensus       478 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~  528 (788)
                      ++....++.+.++.+|..|++.+|.+. .+|..++++.+|+.|++.+|+|.
T Consensus       492 qi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  492 QIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            998777777899999999999999998 67778999999999999999987

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=2e-35  Score=315.74  Aligned_cols=311  Identities=29%  Similarity=0.353  Sum_probs=157.8

Q ss_pred             ecCCCCCCCCCccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcC
Q 003888           10 VRGQGFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGS   89 (788)
Q Consensus        10 ~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~   89 (788)
                      ||.+.+.+-. +..|++  ..|-+-..-.+++. +.-+|++||+++|.+    +..|. .++.+++|+.|+++.|.|. .
T Consensus        13 ip~~i~~~~~-~~~ln~--~~N~~l~~pl~~~~-~~v~L~~l~lsnn~~----~~fp~-~it~l~~L~~ln~s~n~i~-~   82 (1081)
T KOG0618|consen   13 IPEQILNNEA-LQILNL--RRNSLLSRPLEFVE-KRVKLKSLDLSNNQI----SSFPI-QITLLSHLRQLNLSRNYIR-S   82 (1081)
T ss_pred             cchhhccHHH-HHhhhc--cccccccCchHHhh-heeeeEEeecccccc----ccCCc-hhhhHHHHhhcccchhhHh-h
Confidence            4543333333 666666  55554332234444 444577777777776    45554 5667777777777777766 5


Q ss_pred             CChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCcccccccccccc
Q 003888           90 LPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHS  169 (788)
Q Consensus        90 ~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  169 (788)
                      .|.+..++.+|++|+|.+|.+. .+|. .+..+.+|++|++++|++. .+|. .+..+..+.++..++|....       
T Consensus        83 vp~s~~~~~~l~~lnL~~n~l~-~lP~-~~~~lknl~~LdlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N~~~~-------  151 (1081)
T KOG0618|consen   83 VPSSCSNMRNLQYLNLKNNRLQ-SLPA-SISELKNLQYLDLSFNHFG-PIPL-VIEVLTAEEELAASNNEKIQ-------  151 (1081)
T ss_pred             Cchhhhhhhcchhheeccchhh-cCch-hHHhhhcccccccchhccC-CCch-hHHhhhHHHHHhhhcchhhh-------
Confidence            5666777777777777777776 6676 6777777777777777664 3332 34445555555555551110       


Q ss_pred             CCCCcccccEEEccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCCC
Q 003888          170 LTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHR  249 (788)
Q Consensus       170 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~  249 (788)
                                               .++.. .++.+++..+.+.+.++... ..+..  .|+|.+|.+.   ...+..++
T Consensus       152 -------------------------~lg~~-~ik~~~l~~n~l~~~~~~~i-~~l~~--~ldLr~N~~~---~~dls~~~  199 (1081)
T KOG0618|consen  152 -------------------------RLGQT-SIKKLDLRLNVLGGSFLIDI-YNLTH--QLDLRYNEME---VLDLSNLA  199 (1081)
T ss_pred             -------------------------hhccc-cchhhhhhhhhcccchhcch-hhhhe--eeecccchhh---hhhhhhcc
Confidence                                     00011 14455555555555554432 12222  3555555554   12233444


Q ss_pred             CccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEE
Q 003888          250 WLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLA  329 (788)
Q Consensus       250 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~  329 (788)
                      +|+.+....|++. .+..    .-++++.|+.+.|.++...+.  .--.+|+++++++|+++ .+|+++. .+.+|+.++
T Consensus       200 ~l~~l~c~rn~ls-~l~~----~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~-~~~nle~l~  270 (1081)
T KOG0618|consen  200 NLEVLHCERNQLS-ELEI----SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIG-ACANLEALN  270 (1081)
T ss_pred             chhhhhhhhcccc-eEEe----cCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHH-hcccceEec
Confidence            5555555555443 1111    124555555555555422111  11234555555555554 4554443 355555555


Q ss_pred             ccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCC
Q 003888          330 LSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLS  384 (788)
Q Consensus       330 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~  384 (788)
                      ..+|+++. .+..+....+|+.|++..|.+. -+|....+++.|++|+|..|.+.
T Consensus       271 ~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~  323 (1081)
T KOG0618|consen  271 ANHNRLVA-LPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP  323 (1081)
T ss_pred             ccchhHHh-hHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc
Confidence            55555533 2333334444555555555444 33333444444555555544444

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=2.5e-34  Score=307.42  Aligned_cols=427  Identities=27%  Similarity=0.320  Sum_probs=324.3

Q ss_pred             cCCCCCCCCCccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCC
Q 003888           11 RGQGFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSL   90 (788)
Q Consensus        11 ~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~   90 (788)
                      |..+..+.-+|++||+  +++++. .+|..+. .+.+|+.|+++.|.+    ..+|. +..++.+|++|.|.+|.+. .+
T Consensus        37 pl~~~~~~v~L~~l~l--snn~~~-~fp~~it-~l~~L~~ln~s~n~i----~~vp~-s~~~~~~l~~lnL~~n~l~-~l  106 (1081)
T KOG0618|consen   37 PLEFVEKRVKLKSLDL--SNNQIS-SFPIQIT-LLSHLRQLNLSRNYI----RSVPS-SCSNMRNLQYLNLKNNRLQ-SL  106 (1081)
T ss_pred             chHHhhheeeeEEeec--cccccc-cCCchhh-hHHHHhhcccchhhH----hhCch-hhhhhhcchhheeccchhh-cC
Confidence            4445666677999999  999976 6788888 999999999999999    67775 7889999999999999988 88


Q ss_pred             ChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCccccccccccccC
Q 003888           91 PWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSL  170 (788)
Q Consensus        91 ~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  170 (788)
                      |..+..+++|++||+|+|.+. .+|. .+..++.++.+..++|....     .++... .+.+++..|.+.         
T Consensus       107 P~~~~~lknl~~LdlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N~~~~-----~lg~~~-ik~~~l~~n~l~---------  169 (1081)
T KOG0618|consen  107 PASISELKNLQYLDLSFNHFG-PIPL-VIEVLTAEEELAASNNEKIQ-----RLGQTS-IKKLDLRLNVLG---------  169 (1081)
T ss_pred             chhHHhhhcccccccchhccC-CCch-hHHhhhHHHHHhhhcchhhh-----hhcccc-chhhhhhhhhcc---------
Confidence            999999999999999999997 9998 89999999999999993221     122222 555555554433         


Q ss_pred             CCCcccccEEEccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCCCC
Q 003888          171 TAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRW  250 (788)
Q Consensus       171 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~~  250 (788)
                                         +.++..+..+..  .+++..|.+. ...   ...+.+|+.|....|++.....    .-++
T Consensus       170 -------------------~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~~----~g~~  220 (1081)
T KOG0618|consen  170 -------------------GSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELEI----SGPS  220 (1081)
T ss_pred             -------------------cchhcchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccceEEe----cCcc
Confidence                               333333444444  5788888765 111   2467788888888877664222    3467


Q ss_pred             ccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEc
Q 003888          251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLAL  330 (788)
Q Consensus       251 L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L  330 (788)
                      ++.|+.+.|.++ .......  ..+|+.++++.|.++ .+|+++..+++|+.++..+|.++ .+|..++ ...+|+.|.+
T Consensus       221 l~~L~a~~n~l~-~~~~~p~--p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~-~~~~L~~l~~  294 (1081)
T KOG0618|consen  221 LTALYADHNPLT-TLDVHPV--PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRIS-RITSLVSLSA  294 (1081)
T ss_pred             hheeeeccCcce-eeccccc--cccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHh-hhhhHHHHHh
Confidence            888999999887 2222211  358999999999998 46699999999999999999997 9999988 5889999999


Q ss_pred             cCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccc-cCCC-CCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCccc
Q 003888          331 SNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSL-SKCS-SLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLE  408 (788)
Q Consensus       331 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~  408 (788)
                      ..|++..+. ....+++.|++|+|..|.+. ..|+.+ .... .|+.|+.+.|++.......=...+.|+.|++.+|.++
T Consensus       295 ~~nel~yip-~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Lt  372 (1081)
T KOG0618|consen  295 AYNELEYIP-PFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLT  372 (1081)
T ss_pred             hhhhhhhCC-Ccccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccc
Confidence            999998754 45567899999999999998 455433 3332 3677777777776322111122567888888888888


Q ss_pred             CCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCcccc
Q 003888          409 GPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVD  488 (788)
Q Consensus       409 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  488 (788)
                      +..-..+.+.+.|+.|++++|.+.                        .+|...+.+++.|++|+||+|+++ .+|..+.
T Consensus       373 d~c~p~l~~~~hLKVLhLsyNrL~------------------------~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva  427 (1081)
T KOG0618|consen  373 DSCFPVLVNFKHLKVLHLSYNRLN------------------------SFPASKLRKLEELEELNLSGNKLT-TLPDTVA  427 (1081)
T ss_pred             ccchhhhccccceeeeeecccccc------------------------cCCHHHHhchHHhHHHhcccchhh-hhhHHHH
Confidence            777677778888888888888774                        455555778888888888888887 5677788


Q ss_pred             CCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCC
Q 003888          489 GLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLH  528 (788)
Q Consensus       489 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~  528 (788)
                      .++.|++|...+|++. ..| .+..+++|+.+|++.|.++
T Consensus       428 ~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  428 NLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             hhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence            8888888888888887 556 6788888888888888775

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=1.5e-32  Score=280.48  Aligned_cols=369  Identities=25%  Similarity=0.362  Sum_probs=207.7

Q ss_pred             CCCccEEEcccCcCc-ccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCC
Q 003888          248 HRWLRFLDVSNNNFQ-GHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLE  326 (788)
Q Consensus       248 ~~~L~~L~L~~n~i~-~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~  326 (788)
                      ++-.+-+|+++|.++ +.+|.+.-+ +++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+...+. .++.|+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs-~Lp~LR   81 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELS-DLPRLR   81 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhc-cchhhH
Confidence            344555677777776 445555544 566777777666664 46666777777777777777665 4544443 466666


Q ss_pred             EEEccCccCCC-cCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCC
Q 003888          327 FLALSNNNLKG-HMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPEN  405 (788)
Q Consensus       327 ~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n  405 (788)
                      .+.+..|++.. -+|..+..+..|+.|+|++|+++ ..|..+..-+++-.|+|++|+|..+....|.+++.|-.|++++|
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N  160 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN  160 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence            66676666542 23444556666777777777766 56666666666667777777666444445556666666677776


Q ss_pred             cccCCccccccCCCCccEEEccCCcCCCCC-CCCCCCCCccEEEccCcccc-cccCcccccCCCCCcEEEccCCcCCCCC
Q 003888          406 HLEGPIPVGFCQLYSLQILDISDNNISGSL-PSCFHPLSIEQVHLSKNMLH-GQLKRGTFFHCSSLVTLDLSYNRLNGSI  483 (788)
Q Consensus       406 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~  483 (788)
                      ++. ..|.....+..|++|++++|.+.... .....+.+|+.|.+++.+-+ ..+|.. +..+.+|..+|+|.|.+. ..
T Consensus       161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~Lp-~v  237 (1255)
T KOG0444|consen  161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNLP-IV  237 (1255)
T ss_pred             hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCCC-cc
Confidence            666 44555566666666777666654211 11222344555555544322 122322 455555555555555554 45


Q ss_pred             CccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCccccccccccc
Q 003888          484 PNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMM  563 (788)
Q Consensus       484 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  563 (788)
                      |+.+..+++|+.|+|++|+|+. ..-......+|++|++|.|+++ ..|.++..                          
T Consensus       238 Pecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcK--------------------------  289 (1255)
T KOG0444|consen  238 PECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCK--------------------------  289 (1255)
T ss_pred             hHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhh--------------------------
Confidence            5555555555555555555552 2222333445555555555554 23333322                          


Q ss_pred             chhhhccccceeeeeccceeeecccccccccEEECCCCcccc-cCcccccCcccCCeEeCCCCcCCccCCccccCCCCCC
Q 003888          564 IPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG-HIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIE  642 (788)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  642 (788)
                                                ++.|+.|++.+|+++- -+|..++.+.+|+.+..++|++. ..|+++..+..|+
T Consensus       290 --------------------------L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~  342 (1255)
T KOG0444|consen  290 --------------------------LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQ  342 (1255)
T ss_pred             --------------------------hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHH
Confidence                                      3355555666665542 34555666666666666665555 4556666666666


Q ss_pred             EEECcCCcccccCCccccCCCCCCEEEccCCcCcccCC
Q 003888          643 SLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIP  680 (788)
Q Consensus       643 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p  680 (788)
                      .|.|++|++. .+|+++.-++.|+.||+..|+=.-..|
T Consensus       343 kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  343 KLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             Hhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence            6666666654 556666666666666666665443333

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=6e-32  Score=276.03  Aligned_cols=365  Identities=23%  Similarity=0.319  Sum_probs=212.1

Q ss_pred             CCCCCEEEcCCCccc-ccCccCcCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCE
Q 003888          224 NTKLRQLYLVNDSLT-GPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQI  302 (788)
Q Consensus       224 l~~L~~L~L~~~~l~-~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~  302 (788)
                      ++-.+-.++++|.+. +.+|.....+..++.|.|...++. .+|.+++. +.+|++|.+++|++.. +-..+..++.|+.
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~-lqkLEHLs~~HN~L~~-vhGELs~Lp~LRs   82 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSR-LQKLEHLSMAHNQLIS-VHGELSDLPRLRS   82 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHH-HhhhhhhhhhhhhhHh-hhhhhccchhhHH
Confidence            344455566666666 345556666666666666666665 66666655 5666666666666653 2334566666666


Q ss_pred             EEcccCcCCC-ccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCC
Q 003888          303 LDLSNNQLTG-EIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNN  381 (788)
Q Consensus       303 L~l~~n~i~~-~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n  381 (788)
                      +.+..|++.. -||..+| .+..|+.|||++|+++. .|..+...+++-.|+|++|+|..+....|.++..|-.|||++|
T Consensus        83 v~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N  160 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN  160 (1255)
T ss_pred             HhhhccccccCCCCchhc-ccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence            6666665542 2566665 46666666666666655 3444555566666666666666443344556666666666666


Q ss_pred             cCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCC-CCCCCCC-CCCCccEEEccCcccccccC
Q 003888          382 SLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNIS-GSLPSCF-HPLSIEQVHLSKNMLHGQLK  459 (788)
Q Consensus       382 ~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~-~~~~L~~L~l~~n~~~~~~~  459 (788)
                      ++. ..|..+..+..|+.|.+++|.+....-..+..+++|++|.+++.+-+ ..+|... .+.+|..++++.|.+. .+|
T Consensus       161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP  238 (1255)
T KOG0444|consen  161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP  238 (1255)
T ss_pred             hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cch
Confidence            665 45555666666666666666655433333445555666666655422 1122222 2556666666666652 222


Q ss_pred             cccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCC-CCCCCCcCc
Q 003888          460 RGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHG-PIPPCFDNT  538 (788)
Q Consensus       460 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~-~~~~~~~~~  538 (788)
                      . .+..+++|+.|+||+|+++. ..-....-.+|++|+++.|+++ ..|++++.++.|+.|.+.+|+++- -+|..++. 
T Consensus       239 e-cly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGK-  314 (1255)
T KOG0444|consen  239 E-CLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGK-  314 (1255)
T ss_pred             H-HHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhh-
Confidence            2 25566666666666666653 2222333456666666666666 556666666666666666666542 12222222 


Q ss_pred             ccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCC
Q 003888          539 TLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQ  618 (788)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  618 (788)
                                                                         +..|+.+..++|.+. .+|+.++.+..|+
T Consensus       315 ---------------------------------------------------L~~Levf~aanN~LE-lVPEglcRC~kL~  342 (1255)
T KOG0444|consen  315 ---------------------------------------------------LIQLEVFHAANNKLE-LVPEGLCRCVKLQ  342 (1255)
T ss_pred             ---------------------------------------------------hhhhHHHHhhccccc-cCchhhhhhHHHH
Confidence                                                               235666666666665 6666666666666


Q ss_pred             eEeCCCCcCCccCCccccCCCCCCEEECcCCccc
Q 003888          619 TLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN  652 (788)
Q Consensus       619 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  652 (788)
                      .|.|++|++.. .|+++.-++.|+.||+..|+-.
T Consensus       343 kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  343 KLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             Hhcccccceee-chhhhhhcCCcceeeccCCcCc
Confidence            66666666663 3566666666666666666654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=6.4e-27  Score=227.72  Aligned_cols=130  Identities=21%  Similarity=0.242  Sum_probs=76.1

Q ss_pred             ccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEccc-CcCCCccchHHHhcCCCCCEEE
Q 003888          251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSN-NQLTGEIPEHLAVSCVNLEFLA  329 (788)
Q Consensus       251 L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~-n~i~~~i~~~~~~~l~~L~~L~  329 (788)
                      ...++|..|+|+ .+|...|+.+++|+.|+|++|.|+.+.|++|.++++|..|.+.+ |+|+ .+|...|.++..|+.|.
T Consensus        69 tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   69 TVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             ceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence            444555555555 55555555556666666666666666666666666655554444 5555 66666666666666666


Q ss_pred             ccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCc
Q 003888          330 LSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNS  382 (788)
Q Consensus       330 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~  382 (788)
                      +.-|++..+..+.|..+++|..|.+.+|.+..+--.+|..+..++.+.+..|.
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence            66666666555566666666666666666553333355555666666555554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=8.1e-27  Score=227.05  Aligned_cols=281  Identities=21%  Similarity=0.234  Sum_probs=223.6

Q ss_pred             EEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccC-
Q 003888          254 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSN-  332 (788)
Q Consensus       254 L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~-  332 (788)
                      .+-++-.++ ++|.++   .+..++++|..|.|+.+.+.+|+.+++|+.|||++|.|+ .|....|.+++++.+|-+.+ 
T Consensus        51 VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~  125 (498)
T KOG4237|consen   51 VDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGN  125 (498)
T ss_pred             EEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcC
Confidence            455555565 788776   458899999999999999999999999999999999999 78777788899988887766 


Q ss_pred             ccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccC---
Q 003888          333 NNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEG---  409 (788)
Q Consensus       333 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~---  409 (788)
                      |+|+.+....|.++..|+.|.+.-|++..+..++|..++++..|.+.+|.+..+....|..+..++.+.+..|.+..   
T Consensus       126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn  205 (498)
T KOG4237|consen  126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN  205 (498)
T ss_pred             CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence            99999999999999999999999999998888999999999999999999985555589999999999998887431   


Q ss_pred             ---------CccccccCCCCccEEEccCCcCCCCCCCCCCCC--CccEEEccCcccccccCcccccCCCCCcEEEccCCc
Q 003888          410 ---------PIPVGFCQLYSLQILDISDNNISGSLPSCFHPL--SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNR  478 (788)
Q Consensus       410 ---------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~  478 (788)
                               ..+..++......-..+.+.++..+.+..|...  .+..-..+.+...+..|...|..+++|++|++++|+
T Consensus       206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~  285 (498)
T KOG4237|consen  206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK  285 (498)
T ss_pred             cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence                     122233333333333344444443444333322  222223344445567777789999999999999999


Q ss_pred             CCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcc
Q 003888          479 LNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT  539 (788)
Q Consensus       479 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~  539 (788)
                      ++++-+.+|.+...+++|.|..|++.......|.++..|+.|+|.+|+|+...|..|....
T Consensus       286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~  346 (498)
T KOG4237|consen  286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF  346 (498)
T ss_pred             cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence            9999999999999999999999999877788899999999999999999988888887654

>PLN03210 Resistant to P

Probab=99.90  E-value=4.9e-22  Score=239.71  Aligned_cols=341  Identities=22%  Similarity=0.242  Sum_probs=209.4

Q ss_pred             cCcCCCCCccEEEcccCc------CcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccch
Q 003888          243 LPIHSHRWLRFLDVSNNN------FQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPE  316 (788)
Q Consensus       243 ~~l~~~~~L~~L~L~~n~------i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~  316 (788)
                      .+|..+++|+.|.+..+.      +...+|..+....++|+.|++.++.+. .+|..| ...+|+.|++.+|.+. .++.
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~  628 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD  628 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence            345566667766665442      222345444443345777777776665 445544 3567777777777765 5655


Q ss_pred             HHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCC
Q 003888          317 HLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTG  396 (788)
Q Consensus       317 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~  396 (788)
                      .+. .+++|+.|+++++......+ .+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+ ++++
T Consensus       629 ~~~-~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s  705 (1153)
T PLN03210        629 GVH-SLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS  705 (1153)
T ss_pred             ccc-cCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence            543 56777777777654333222 35566777777777766555667677777777777777765444555443 5667


Q ss_pred             CCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCccccc------ccCcccccCCCCCc
Q 003888          397 LKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHG------QLKRGTFFHCSSLV  470 (788)
Q Consensus       397 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~------~~~~~~~~~~~~L~  470 (788)
                      |+.|++++|......|..   .++|+.|++++|.+.. .|......+|+.|.+.++....      .++...+..+++|+
T Consensus       706 L~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~  781 (1153)
T PLN03210        706 LYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT  781 (1153)
T ss_pred             CCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-ccccccccccccccccccchhhccccccccchhhhhccccch
Confidence            777777776544444432   3466777777776653 3444455666666665533210      11111123346777


Q ss_pred             EEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCC
Q 003888          471 TLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSL  550 (788)
Q Consensus       471 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~  550 (788)
                      .|++++|.....+|..+.++++|+.|++++|...+.+|... .+++|+.|++++|.....+|..                
T Consensus       782 ~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~----------------  844 (1153)
T PLN03210        782 RLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI----------------  844 (1153)
T ss_pred             heeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc----------------
Confidence            88888776666677777778888888887775444555544 5777888888777543222211                


Q ss_pred             CCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCcc
Q 003888          551 KPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGL  630 (788)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  630 (788)
                                                             .++|+.|+|++|.+. .+|..+..+++|+.|++++|+-...
T Consensus       845 ---------------------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~  884 (1153)
T PLN03210        845 ---------------------------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQR  884 (1153)
T ss_pred             ---------------------------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCc
Confidence                                                   236777888888877 5677788888888888877433334


Q ss_pred             CCccccCCCCCCEEECcCCc
Q 003888          631 IPSTFSNLKHIESLDLSYNK  650 (788)
Q Consensus       631 ~~~~~~~l~~L~~L~Ls~N~  650 (788)
                      +|..+..+++|+.+++++|.
T Consensus       885 l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        885 VSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cCcccccccCCCeeecCCCc
Confidence            55566777888888887775

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.89  E-value=1.1e-21  Score=236.59  Aligned_cols=342  Identities=22%  Similarity=0.269  Sum_probs=254.4

Q ss_pred             CChhhhhcCCCCcEEEcccCcC------CCCCcccccCCC-CCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCC
Q 003888          265 IPVEIGDILPSLISFNISMNAL------DSSIPSSFGNMN-FLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKG  337 (788)
Q Consensus       265 ~~~~~~~~l~~L~~L~L~~n~~------~~~~~~~~~~l~-~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~  337 (788)
                      +....+..+++|+.|.+..+..      ...+|..|..++ +|+.|.+.++.+. .+|..+  ...+|++|++++|.+..
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~  625 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEK  625 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccc
Confidence            3445566688898888865532      224566666664 5889999888887 888776  37889999999988876


Q ss_pred             cCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccC
Q 003888          338 HMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQ  417 (788)
Q Consensus       338 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  417 (788)
                      . +..+..+++|+.|+++++.....+|. +..+++|+.|++++|......|..+..+++|+.|++++|.....+|..+ +
T Consensus       626 L-~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~  702 (1153)
T PLN03210        626 L-WDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N  702 (1153)
T ss_pred             c-ccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence            3 45567788999999988765546664 7788899999999887666788888888999999998876555666554 6


Q ss_pred             CCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCC-------CCCccccCC
Q 003888          418 LYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNG-------SIPNWVDGL  490 (788)
Q Consensus       418 l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-------~~~~~~~~l  490 (788)
                      +++|+.|++++|......|..  ..+|+.|++++|.+ ..+|.. + .+++|+.|++.++....       ..+......
T Consensus       703 l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i-~~lP~~-~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~  777 (1153)
T PLN03210        703 LKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAI-EEFPSN-L-RLENLDELILCEMKSEKLWERVQPLTPLMTMLS  777 (1153)
T ss_pred             CCCCCEEeCCCCCCccccccc--cCCcCeeecCCCcc-cccccc-c-cccccccccccccchhhccccccccchhhhhcc
Confidence            888999999988655555543  35788888888887 345543 2 56788888887754221       112222335


Q ss_pred             CCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhcc
Q 003888          491 SQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQI  570 (788)
Q Consensus       491 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  570 (788)
                      ++|+.|++++|.....+|..+.++++|+.|++++|...+.+|...                                   
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-----------------------------------  822 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-----------------------------------  822 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-----------------------------------
Confidence            789999999988777788889999999999999886544444322                                   


Q ss_pred             ccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCc
Q 003888          571 HENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNK  650 (788)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  650 (788)
                                        .+++|+.|++++|......|..   .++|+.|+|++|.++. +|..+..+++|+.|++++|+
T Consensus       823 ------------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~  880 (1153)
T PLN03210        823 ------------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCN  880 (1153)
T ss_pred             ------------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCC
Confidence                              1458999999998765555543   3689999999999985 57889999999999999965


Q ss_pred             ccccCCccccCCCCCCEEEccCCc
Q 003888          651 LNGKIPHQLVELKTLAVFSVAYNN  674 (788)
Q Consensus       651 l~~~~p~~l~~l~~L~~L~l~~N~  674 (788)
                      -...+|..+..+++|+.+++++|.
T Consensus       881 ~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        881 NLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CcCccCcccccccCCCeeecCCCc
Confidence            545678788899999999999985

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=5.1e-20  Score=205.41  Aligned_cols=74  Identities=32%  Similarity=0.503  Sum_probs=32.8

Q ss_pred             CCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEc
Q 003888          347 TNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDI  426 (788)
Q Consensus       347 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  426 (788)
                      ++|++|++++|+++ .+|..   .++|+.|++++|.+. .+|..   .++|+.|++++|+++. +|.   ..++|+.|++
T Consensus       242 ~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdL  309 (788)
T PRK15387        242 PELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSV  309 (788)
T ss_pred             CCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeEC
Confidence            44555555555444 22321   234455555555544 22221   1344455555555542 222   1244555555


Q ss_pred             cCCcCC
Q 003888          427 SDNNIS  432 (788)
Q Consensus       427 ~~n~~~  432 (788)
                      ++|+++
T Consensus       310 S~N~L~  315 (788)
T PRK15387        310 SDNQLA  315 (788)
T ss_pred             CCCccc
Confidence            555554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.82  E-value=1.3e-19  Score=202.29  Aligned_cols=265  Identities=25%  Similarity=0.284  Sum_probs=196.3

Q ss_pred             CCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeC
Q 003888          323 VNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIM  402 (788)
Q Consensus       323 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  402 (788)
                      .+-..|+++++.++.+ |..+.  ++|+.|++.+|+++ .+|.   ..++|++|++++|+++. +|..   .++|+.|++
T Consensus       201 ~~~~~LdLs~~~LtsL-P~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~L  269 (788)
T PRK15387        201 NGNAVLNVGESGLTTL-PDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSI  269 (788)
T ss_pred             CCCcEEEcCCCCCCcC-Ccchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCc-ccCc---ccccceeec
Confidence            3456677777777653 33333  46788888888887 4554   25789999999999984 4532   468999999


Q ss_pred             CCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCC
Q 003888          403 PENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGS  482 (788)
Q Consensus       403 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  482 (788)
                      ++|.+.. +|..   .++|+.|++++|+++....   .+++|+.|++++|.+.+ +|..    ..+|+.|++++|++++ 
T Consensus       270 s~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~-Lp~l----p~~L~~L~Ls~N~L~~-  336 (788)
T PRK15387        270 FSNPLTH-LPAL---PSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLAS-LPAL----PSELCKLWAYNNQLTS-  336 (788)
T ss_pred             cCCchhh-hhhc---hhhcCEEECcCCccccccc---cccccceeECCCCcccc-CCCC----cccccccccccCcccc-
Confidence            9999874 4432   3578899999999885432   24679999999998854 4432    2468888899998874 


Q ss_pred             CCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccc
Q 003888          483 IPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSM  562 (788)
Q Consensus       483 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  562 (788)
                      +|..   ..+|++|++++|++++ +|..   .++|+.|++++|.+.+ +|..                            
T Consensus       337 LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l----------------------------  380 (788)
T PRK15387        337 LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL----------------------------  380 (788)
T ss_pred             cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc----------------------------
Confidence            4432   2578899999999884 4432   3578888888888763 2211                            


Q ss_pred             cchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCC
Q 003888          563 MIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIE  642 (788)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  642 (788)
                                                 +++|+.|++++|++++ +|..   .++|+.|++++|+++++ |..   ..+|+
T Consensus       381 ---------------------------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~LssI-P~l---~~~L~  425 (788)
T PRK15387        381 ---------------------------PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTSL-PML---PSGLL  425 (788)
T ss_pred             ---------------------------ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCCC-Ccc---hhhhh
Confidence                                       2368999999999984 5543   36899999999999964 543   35788


Q ss_pred             EEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCCcc
Q 003888          643 SLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWT  683 (788)
Q Consensus       643 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~  683 (788)
                      .|++++|+++ .+|..+.++++|+.|++++|++++..|..+
T Consensus       426 ~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        426 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             hhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            9999999998 789999999999999999999998877654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.74  E-value=6.9e-18  Score=189.99  Aligned_cols=97  Identities=27%  Similarity=0.416  Sum_probs=48.1

Q ss_pred             CCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEec
Q 003888          275 SLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQL  354 (788)
Q Consensus       275 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  354 (788)
                      +.+.|+++++.++. +|..+  .+.|+.|++++|.++ .+|..++   ++|++|++++|.++.++ ..+  .++|+.|++
T Consensus       179 ~~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP-~~l--~~~L~~L~L  248 (754)
T PRK15370        179 NKTELRLKILGLTT-IPACI--PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSIP-ATL--PDTIQEMEL  248 (754)
T ss_pred             CceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccCC-hhh--hccccEEEC
Confidence            45566666666553 34333  235666666666665 5555442   35666666666555432 221  124555555


Q ss_pred             cCCcCCCcCCccccCCCCCCEEEccCCcCC
Q 003888          355 EGNHLEGEIPQSLSKCSSLEGLYLNNNSLS  384 (788)
Q Consensus       355 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~  384 (788)
                      ++|.+. .+|..+.  .+|+.|++++|.++
T Consensus       249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~  275 (754)
T PRK15370        249 SINRIT-ELPERLP--SALQSLDLFHNKIS  275 (754)
T ss_pred             cCCccC-cCChhHh--CCCCEEECcCCccC
Confidence            555554 3333332  24455555554444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.73  E-value=1.8e-17  Score=186.69  Aligned_cols=181  Identities=27%  Similarity=0.395  Sum_probs=95.2

Q ss_pred             CCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeC
Q 003888          323 VNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIM  402 (788)
Q Consensus       323 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  402 (788)
                      .+...|++++++++.++ ..+  .++|+.|++++|+++ .+|..+.  ++|+.|++++|.++ .+|..+.  ++|+.|++
T Consensus       178 ~~~~~L~L~~~~LtsLP-~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKILGLTTIP-ACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL  248 (754)
T ss_pred             cCceEEEeCCCCcCcCC-ccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence            35677888877777643 222  246778888888777 4554443  47788888887776 3454332  36777777


Q ss_pred             CCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCC
Q 003888          403 PENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGS  482 (788)
Q Consensus       403 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  482 (788)
                      ++|.+. .+|..+.  .+|+.|++++|+++.. |..+ +.+|+.|++++|.+.. +|.. +  .++|+.|++++|+++. 
T Consensus       249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~L-P~~l-~~sL~~L~Ls~N~Lt~-LP~~-l--p~sL~~L~Ls~N~Lt~-  318 (754)
T PRK15370        249 SINRIT-ELPERLP--SALQSLDLFHNKISCL-PENL-PEELRYLSVYDNSIRT-LPAH-L--PSGITHLNVQSNSLTA-  318 (754)
T ss_pred             cCCccC-cCChhHh--CCCCEEECcCCccCcc-cccc-CCCCcEEECCCCcccc-Cccc-c--hhhHHHHHhcCCcccc-
Confidence            777776 4454443  3677777777776632 2221 1245555555554432 2221 1  1234444455444442 


Q ss_pred             CCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcC
Q 003888          483 IPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNL  527 (788)
Q Consensus       483 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i  527 (788)
                      +|..+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|++
T Consensus       319 LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L  358 (754)
T PRK15370        319 LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQI  358 (754)
T ss_pred             CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCC
Confidence            22211  1344444444444442 222221  3444444444444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=4.2e-18  Score=179.10  Aligned_cols=260  Identities=23%  Similarity=0.277  Sum_probs=134.6

Q ss_pred             EEcccCCcccccc-hhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCc------CCChhhcC
Q 003888           24 LDMVFARTALNTS-FLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRG------SLPWCLAN   96 (788)
Q Consensus        24 L~L~~~~~~~~~~-~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~l~~   96 (788)
                      |+|  .++.+++. ....+. .+++|++|+++++.+...+.......+...+.|++|+++++.+.+      .++.++..
T Consensus         3 l~L--~~~~l~~~~~~~~~~-~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~   79 (319)
T cd00116           3 LSL--KGELLKTERATELLP-KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK   79 (319)
T ss_pred             ccc--ccCcccccchHHHHH-HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence            455  66666533 233344 666777777777776421111112234566667777777776652      23445666


Q ss_pred             CCCCCEEECCCCcCcCcCChhhhcCCCC---CCEEECcCccccccCC---ccccccC-CCCcEEEccCcccccccccccc
Q 003888           97 MTSLRILDVSSNQLTGSISSSPLVHLTS---IEELMLSNNHFQIPIS---LEPLFNH-SRLKIFDAANNEIKAEITESHS  169 (788)
Q Consensus        97 l~~L~~L~Ls~n~~~~~i~~~~l~~l~~---L~~L~Ls~n~l~~~~~---~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~  169 (788)
                      +++|++|++++|.+.+..+. .+..+.+   |++|++++|.+.+...   ...+..+ ++|++|++++|.+++...    
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~-~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~----  154 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCG-VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC----  154 (319)
T ss_pred             cCceeEEEccCCCCChhHHH-HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH----
Confidence            77777777777777633333 4444444   7777777776652111   0123344 566666666665542100    


Q ss_pred             CCCCcccccEEEccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhH---hhcCCCCCEEEcCCCccccc----Cc
Q 003888          170 LTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWL---LENNTKLRQLYLVNDSLTGP----FR  242 (788)
Q Consensus       170 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~l~~L~~L~L~~~~l~~~----~~  242 (788)
                                          ..++..+..+++|++|++++|.+.+.....+   +..+++|++|++++|.+++.    ..
T Consensus       155 --------------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  214 (319)
T cd00116         155 --------------------EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA  214 (319)
T ss_pred             --------------------HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH
Confidence                                0122333445566666776666654322221   12334666666666665532    12


Q ss_pred             cCcCCCCCccEEEcccCcCcccCChhhhhc----CCCCcEEEcccCcCCC----CCcccccCCCCCCEEEcccCcCC
Q 003888          243 LPIHSHRWLRFLDVSNNNFQGHIPVEIGDI----LPSLISFNISMNALDS----SIPSSFGNMNFLQILDLSNNQLT  311 (788)
Q Consensus       243 ~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~----l~~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~l~~n~i~  311 (788)
                      ..+..+++|++|++++|.+++.....+...    .+.|++|++++|.++.    .+...+..+++|+++++++|.+.
T Consensus       215 ~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         215 ETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             HHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            234455666666666666554222232222    2456666666665541    11223344455555555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=5.3e-19  Score=185.95  Aligned_cols=34  Identities=29%  Similarity=0.332  Sum_probs=17.0

Q ss_pred             EEcccCcCCCccchHHHhcCCCCCEEEccCccCC
Q 003888          303 LDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLK  336 (788)
Q Consensus       303 L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~  336 (788)
                      |+|..+.+++.-....+..+.+|++++++++.++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~   36 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLG   36 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCc
Confidence            4555555543333333334555666666665553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=1.8e-17  Score=143.41  Aligned_cols=86  Identities=30%  Similarity=0.461  Sum_probs=53.2

Q ss_pred             CCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCC
Q 003888          439 FHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQ  518 (788)
Q Consensus       439 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  518 (788)
                      |.+..++.|.+++|+++ .+|+. ++.+.+|+.|++++|+++ ..|..++.+++|+.|+++-|++. ..|..|+.+|.|+
T Consensus        30 f~~s~ITrLtLSHNKl~-~vppn-ia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLT-VVPPN-IAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             cchhhhhhhhcccCcee-ecCCc-HHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            33444444444444442 33333 566667777777777776 45666677777777777777766 6666777777777


Q ss_pred             EEEccCCcCC
Q 003888          519 LLDLSNNNLH  528 (788)
Q Consensus       519 ~L~Ls~n~i~  528 (788)
                      .||+.+|.+.
T Consensus       106 vldltynnl~  115 (264)
T KOG0617|consen  106 VLDLTYNNLN  115 (264)
T ss_pred             hhhccccccc
Confidence            7777766654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.60  E-value=1.9e-17  Score=143.24  Aligned_cols=180  Identities=28%  Similarity=0.467  Sum_probs=150.6

Q ss_pred             ccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCccccc
Q 003888          463 FFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE  542 (788)
Q Consensus       463 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  542 (788)
                      +-.+..++.|.+++|+++ ..|..+..+.+|+.|++.+|++. ..|..++.+++|+.|+++-|++. ..|..|+.     
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs-----  100 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS-----  100 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC-----
Confidence            446678899999999999 56667889999999999999998 67888999999999999999886 55666655     


Q ss_pred             ccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccc-cCcccccCcccCCeEe
Q 003888          543 SSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG-HIPPQIGNLTRIQTLN  621 (788)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~  621 (788)
                                                                     +|.|+.|||++|++.+ ..|..|..++.|+.|+
T Consensus       101 -----------------------------------------------~p~levldltynnl~e~~lpgnff~m~tlraly  133 (264)
T KOG0617|consen  101 -----------------------------------------------FPALEVLDLTYNNLNENSLPGNFFYMTTLRALY  133 (264)
T ss_pred             -----------------------------------------------CchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence                                                           5589999999999864 6789999999999999


Q ss_pred             CCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCCcccccCCC---CccccCCCC
Q 003888          622 LSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATF---NESSYEGNT  698 (788)
Q Consensus       622 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~---~~~~~~gn~  698 (788)
                      |+.|.+. ++|..++++++|+.|.+..|.+. .+|..++.++.|+.|++.+|+++...|+ ++++.-.   .....+.||
T Consensus       134 l~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe-l~~l~l~~~k~v~r~E~NP  210 (264)
T KOG0617|consen  134 LGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE-LANLDLVGNKQVMRMEENP  210 (264)
T ss_pred             hcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh-hhhhhhhhhHHHHhhhhCC
Confidence            9999998 56778899999999999999998 7899999999999999999999976665 4444322   123345566


Q ss_pred             CC
Q 003888          699 FL  700 (788)
Q Consensus       699 ~~  700 (788)
                      |.
T Consensus       211 wv  212 (264)
T KOG0617|consen  211 WV  212 (264)
T ss_pred             CC
Confidence            64

>PLN03150 hypothetical protein; Provisional

Probab=99.47  E-value=1.5e-13  Score=154.95  Aligned_cols=118  Identities=36%  Similarity=0.629  Sum_probs=107.4

Q ss_pred             cccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEcc
Q 003888          592 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVA  671 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  671 (788)
                      .++.|+|++|.+.+.+|..++.+++|+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|+.+.++++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCcccCCCccccc-CCCCccccCCCCCCCCCCC-CCCC
Q 003888          672 YNNLSGEIPEWTAQF-ATFNESSYEGNTFLCGLPL-PICR  709 (788)
Q Consensus       672 ~N~l~~~~p~~~~~~-~~~~~~~~~gn~~~c~~~l-~~c~  709 (788)
                      +|+++|.+|..+... ..+..+++.+|+.+|++|. ..|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999999876553 4556788999999998763 4564

>PLN03150 hypothetical protein; Provisional

Probab=99.16  E-value=1e-10  Score=132.01  Aligned_cols=114  Identities=33%  Similarity=0.522  Sum_probs=101.6

Q ss_pred             CCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccE
Q 003888          516 QLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSG  595 (788)
Q Consensus       516 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  595 (788)
                      .++.|+|++|.+.+.+|..+..                                                    +++|+.
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~----------------------------------------------------L~~L~~  446 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISK----------------------------------------------------LRHLQS  446 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhC----------------------------------------------------CCCCCE
Confidence            4678999999998888876655                                                    458999


Q ss_pred             EECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCC-CCCCEEEccCCc
Q 003888          596 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL-KTLAVFSVAYNN  674 (788)
Q Consensus       596 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~l~~N~  674 (788)
                      |+|++|.+.+.+|..++.+++|+.|+|++|++++.+|+.++++++|++|+|++|++++.+|..+... .++..+++.+|+
T Consensus       447 L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             EECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999988764 577899999998


Q ss_pred             CcccCCC
Q 003888          675 LSGEIPE  681 (788)
Q Consensus       675 l~~~~p~  681 (788)
                      ..|..|.
T Consensus       527 ~lc~~p~  533 (623)
T PLN03150        527 GLCGIPG  533 (623)
T ss_pred             cccCCCC
Confidence            7776554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.14  E-value=4.3e-12  Score=123.49  Aligned_cols=96  Identities=29%  Similarity=0.377  Sum_probs=61.0

Q ss_pred             HHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCC---CCCcCCChh-------hcCCCCCCEEECCCCc
Q 003888           40 IIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNN---DLRGSLPWC-------LANMTSLRILDVSSNQ  109 (788)
Q Consensus        40 ~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n---~l~~~~~~~-------l~~l~~L~~L~Ls~n~  109 (788)
                      .+. .+..++.++||+|.++.-..+.....+.+.+.|+..++|.-   +....+|.+       +-.+++|++||||.|-
T Consensus        25 ~~~-~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   25 ELE-PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             Hhc-ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            344 67788888888888853222222335667777888777653   233344433       4567788888888888


Q ss_pred             CcCcCCh---hhhcCCCCCCEEECcCcccc
Q 003888          110 LTGSISS---SPLVHLTSIEELMLSNNHFQ  136 (788)
Q Consensus       110 ~~~~i~~---~~l~~l~~L~~L~Ls~n~l~  136 (788)
                      +.-.-+.   .-+++++.|++|.|.+|.+.
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg  133 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCGLG  133 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence            7622222   24567788888888888764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.13  E-value=3.5e-11  Score=110.46  Aligned_cols=108  Identities=30%  Similarity=0.390  Sum_probs=33.7

Q ss_pred             CCCCcEEeCCCCCCCCCCCCCCccccc-CCCCCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCC
Q 003888           45 MPSLKYLSMSDSTLGTNSSRILDQGLC-SLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLT  123 (788)
Q Consensus        45 l~~L~~L~Ls~~~l~~~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~  123 (788)
                      ..++++|+|++|.|    ..+.  .++ .+.+|++|+|++|.|+..  +.+..+++|++|++++|.|+ .++......++
T Consensus        18 ~~~~~~L~L~~n~I----~~Ie--~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp   88 (175)
T PF14580_consen   18 PVKLRELNLRGNQI----STIE--NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLP   88 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-T
T ss_pred             cccccccccccccc----cccc--chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCC
Confidence            34566677777766    3343  244 466677777777776643  24666677777777777776 56541223567


Q ss_pred             CCCEEECcCccccccCCccccccCCCCcEEEccCcccc
Q 003888          124 SIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIK  161 (788)
Q Consensus       124 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~  161 (788)
                      +|++|++++|++...-....++.+++|+.|++.+|++.
T Consensus        89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            77777777777664444455666677777777777654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.12  E-value=1.1e-11  Score=117.65  Aligned_cols=131  Identities=27%  Similarity=0.277  Sum_probs=92.0

Q ss_pred             CCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhc
Q 003888          490 LSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQ  569 (788)
Q Consensus       490 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  569 (788)
                      ...|+++++++|.|+ .+.++..-+|.++.|++|+|.+.....  +                                  
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n--L----------------------------------  325 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN--L----------------------------------  325 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh--h----------------------------------
Confidence            355777777777777 445566667777777777777652111  1                                  


Q ss_pred             cccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCC
Q 003888          570 IHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN  649 (788)
Q Consensus       570 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  649 (788)
                                        ..+++|+.||||+|.++. +..+-..+-+.++|.|+.|.|.++  +++..+-+|..||+++|
T Consensus       326 ------------------a~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N  384 (490)
T KOG1259|consen  326 ------------------AELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSN  384 (490)
T ss_pred             ------------------hhcccceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheecccccc
Confidence                              115577788888887773 334445677888888888888766  67788888888888888


Q ss_pred             cccccC-CccccCCCCCCEEEccCCcCccc
Q 003888          650 KLNGKI-PHQLVELKTLAVFSVAYNNLSGE  678 (788)
Q Consensus       650 ~l~~~~-p~~l~~l~~L~~L~l~~N~l~~~  678 (788)
                      +|.... ...++++|-|+.+.+.+|++.+.
T Consensus       385 ~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  385 QIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             chhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            886422 24677888888888888888854

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.09  E-value=4.8e-12  Score=130.48  Aligned_cols=170  Identities=32%  Similarity=0.470  Sum_probs=116.1

Q ss_pred             EEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCC
Q 003888          446 QVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNN  525 (788)
Q Consensus       446 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  525 (788)
                      ..+++.|++ .++|.. +..+..|+.+.+..|.+. .+|..+..+..|+.|+|+.|++. ..|..++.++ |+.|-+++|
T Consensus        79 ~aDlsrNR~-~elp~~-~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   79 FADLSRNRF-SELPEE-ACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN  153 (722)
T ss_pred             hhhcccccc-ccCchH-HHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence            344444444 344443 555566777777777766 56667777777777777777776 5566666555 677777777


Q ss_pred             cCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccc
Q 003888          526 NLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG  605 (788)
Q Consensus       526 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  605 (788)
                      +++. +|..+..                                                    .+.|..||.+.|.+. 
T Consensus       154 kl~~-lp~~ig~----------------------------------------------------~~tl~~ld~s~nei~-  179 (722)
T KOG0532|consen  154 KLTS-LPEEIGL----------------------------------------------------LPTLAHLDVSKNEIQ-  179 (722)
T ss_pred             cccc-CCccccc----------------------------------------------------chhHHHhhhhhhhhh-
Confidence            7653 2222221                                                    346777888888887 


Q ss_pred             cCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcc
Q 003888          606 HIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSG  677 (788)
Q Consensus       606 ~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~  677 (788)
                      .+|..++++.+|+.|.++.|++...+ ..+.. -.|..||+|.|+++ .+|..|.+|+.|++|-|.+|+|+.
T Consensus       180 slpsql~~l~slr~l~vrRn~l~~lp-~El~~-LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  180 SLPSQLGYLTSLRDLNVRRNHLEDLP-EELCS-LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hchHHhhhHHHHHHHHHhhhhhhhCC-HHHhC-CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence            66777888888888888888888654 34443 34778888888887 788888888888888888888874

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=2.5e-11  Score=121.45  Aligned_cols=88  Identities=23%  Similarity=0.235  Sum_probs=42.3

Q ss_pred             CCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCCCCccEEEcccCcCcccCChhhhhcCCCCcEE
Q 003888          200 HDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISF  279 (788)
Q Consensus       200 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L  279 (788)
                      +.|+.|.+++|+++-.-..+....+|+|+.|++..|............+..|++|||++|++.+.-.......+|.|+.|
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence            45555666666655433344445566666666666642222222333344555556665554421111111224555555


Q ss_pred             EcccCcCC
Q 003888          280 NISMNALD  287 (788)
Q Consensus       280 ~L~~n~~~  287 (788)
                      +++.|.+.
T Consensus       277 nls~tgi~  284 (505)
T KOG3207|consen  277 NLSSTGIA  284 (505)
T ss_pred             hccccCcc
Confidence            55555544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.04  E-value=1.4e-10  Score=106.60  Aligned_cols=131  Identities=22%  Similarity=0.362  Sum_probs=53.7

Q ss_pred             CCCCCCCccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChh
Q 003888           14 GFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWC   93 (788)
Q Consensus        14 ~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~   93 (788)
                      .+-+..+++.|+|  .++.++..  +.+...+.+|+.||+++|.+    ..+.  .+..+++|++|++++|+|+.. ...
T Consensus        14 ~~~n~~~~~~L~L--~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I----~~l~--~l~~L~~L~~L~L~~N~I~~i-~~~   82 (175)
T PF14580_consen   14 QYNNPVKLRELNL--RGNQISTI--ENLGATLDKLEVLDLSNNQI----TKLE--GLPGLPRLKTLDLSNNRISSI-SEG   82 (175)
T ss_dssp             --------------------------S--TT-TT--EEE-TTS------S--T--T----TT--EEE--SS---S--CHH
T ss_pred             ccccccccccccc--cccccccc--cchhhhhcCCCEEECCCCCC----cccc--CccChhhhhhcccCCCCCCcc-ccc
Confidence            4667778999999  99998753  23432578999999999999    5565  588999999999999999954 444


Q ss_pred             h-cCCCCCCEEECCCCcCcCcCCh-hhhcCCCCCCEEECcCccccccCC--ccccccCCCCcEEEcc
Q 003888           94 L-ANMTSLRILDVSSNQLTGSISS-SPLVHLTSIEELMLSNNHFQIPIS--LEPLFNHSRLKIFDAA  156 (788)
Q Consensus        94 l-~~l~~L~~L~Ls~n~~~~~i~~-~~l~~l~~L~~L~Ls~n~l~~~~~--~~~l~~l~~L~~L~l~  156 (788)
                      + ..+++|++|++++|+|. .+.. ..++.+++|++|++.+|+++....  ...+..+++|+.||-.
T Consensus        83 l~~~lp~L~~L~L~~N~I~-~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   83 LDKNLPNLQELYLSNNKIS-DLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             HHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             hHHhCCcCCEEECcCCcCC-ChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            5 47999999999999997 4432 357889999999999999874311  1246778999998743

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=3.8e-11  Score=120.24  Aligned_cols=63  Identities=33%  Similarity=0.349  Sum_probs=25.2

Q ss_pred             CCCCCEEEcCCCcccccCc-cCcCCCCCccEEEcccCcCcccCC-hhhhhcCCCCcEEEcccCcC
Q 003888          224 NTKLRQLYLVNDSLTGPFR-LPIHSHRWLRFLDVSNNNFQGHIP-VEIGDILPSLISFNISMNAL  286 (788)
Q Consensus       224 l~~L~~L~L~~~~l~~~~~-~~l~~~~~L~~L~L~~n~i~~~~~-~~~~~~l~~L~~L~L~~n~~  286 (788)
                      +.+|+++.|.++....... .....|++++.|||+.|-+..-.+ ..+.+.+|+|+.|+++.|++
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl  184 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRL  184 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccc
Confidence            3445555555444432211 233344444455555443331111 11223344444444444443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.02  E-value=6.5e-11  Score=112.41  Aligned_cols=132  Identities=34%  Similarity=0.371  Sum_probs=106.7

Q ss_pred             CCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccC
Q 003888          466 CSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSN  545 (788)
Q Consensus       466 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~  545 (788)
                      ...|+++||++|.|+ .+.+...-.|.++.|++++|.++...  .+..+++|+.||+|+|.++.... +-          
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~G-wh----------  348 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECVG-WH----------  348 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhhhh-hH----------
Confidence            367899999999998 56667777899999999999998443  48889999999999998763211 00          


Q ss_pred             CCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCC
Q 003888          546 NSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHN  625 (788)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N  625 (788)
                                                                .-+.+.+.|.|++|.|...  ..+..+-+|..||+++|
T Consensus       349 ------------------------------------------~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N  384 (490)
T KOG1259|consen  349 ------------------------------------------LKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSN  384 (490)
T ss_pred             ------------------------------------------hhhcCEeeeehhhhhHhhh--hhhHhhhhheecccccc
Confidence                                                      0145889999999998633  46888999999999999


Q ss_pred             cCCccC-CccccCCCCCCEEECcCCcccccCC
Q 003888          626 NLTGLI-PSTFSNLKHIESLDLSYNKLNGKIP  656 (788)
Q Consensus       626 ~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p  656 (788)
                      +|.... -..++++|-|+.+.|.+|++.+ +|
T Consensus       385 ~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~-~v  415 (490)
T KOG1259|consen  385 QIEELDEVNHIGNLPCLETLRLTGNPLAG-SV  415 (490)
T ss_pred             chhhHHHhcccccccHHHHHhhcCCCccc-cc
Confidence            998664 3678999999999999999984 44

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.02  E-value=5.7e-10  Score=120.76  Aligned_cols=104  Identities=34%  Similarity=0.486  Sum_probs=42.6

Q ss_pred             CCCccEEEccCCcCCCCCCCCCCCC-CccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEE
Q 003888          418 LYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHL  496 (788)
Q Consensus       418 l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  496 (788)
                      .+.++.|++.+|.++...+...... +++.|++++|.+. .++.. +..+++|+.|++++|++.. +|......++|+.|
T Consensus       115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~-~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L  191 (394)
T COG4886         115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSP-LRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNL  191 (394)
T ss_pred             ccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhh-hhccccccccccCCchhhh-hhhhhhhhhhhhhe
Confidence            3455555555555554333222221 3333333333331 11111 3444555555555555542 22222234455555


Q ss_pred             EccCCcCccccCcccCCCCCCCEEEccCC
Q 003888          497 ILGHNNLEGEVPVQLCELNQLQLLDLSNN  525 (788)
Q Consensus       497 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  525 (788)
                      ++++|++. .+|........|+++.+++|
T Consensus       192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         192 DLSGNKIS-DLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             eccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence            55555554 22222222333444444444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.01  E-value=7.8e-12  Score=128.93  Aligned_cols=176  Identities=30%  Similarity=0.444  Sum_probs=150.1

Q ss_pred             CCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCccccccc
Q 003888          465 HCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESS  544 (788)
Q Consensus       465 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~  544 (788)
                      .+..-...|++.|++. .+|..+..+..|+.+.++.|.+. .+|..++++..|..+|++.|+++...+ .+..+      
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~-~lC~l------  143 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPD-GLCDL------  143 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCCh-hhhcC------
Confidence            3445567899999998 67888888899999999999998 788899999999999999999874332 22221      


Q ss_pred             CCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCC
Q 003888          545 NNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSH  624 (788)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  624 (788)
                                                                     -|+.|-+++|+++ .+|..++.+..|..||.+.
T Consensus       144 -----------------------------------------------pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~  175 (722)
T KOG0532|consen  144 -----------------------------------------------PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSK  175 (722)
T ss_pred             -----------------------------------------------cceeEEEecCccc-cCCcccccchhHHHhhhhh
Confidence                                                           4888999999998 7888999999999999999


Q ss_pred             CcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCCcccccCCCCccccCCCCCCC
Q 003888          625 NNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC  701 (788)
Q Consensus       625 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~gn~~~c  701 (788)
                      |.+..+ |..+.++.+|+.|+++.|++. .+|+++..+ .|..||++.|+++ .+|-.|..+..+..+.++.||..-
T Consensus       176 nei~sl-psql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  176 NEIQSL-PSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hhhhhc-hHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence            999954 677899999999999999998 677777754 5889999999999 788889999999999999999743

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.98  E-value=7.3e-10  Score=119.92  Aligned_cols=102  Identities=35%  Similarity=0.513  Sum_probs=53.1

Q ss_pred             EEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCC-CCCEEEccCCcCCCCCcccccCCCCCCEEeCCCC
Q 003888          327 FLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCS-SLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPEN  405 (788)
Q Consensus       327 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n  405 (788)
                      .+++..+.+.... ..+...+.++.|++.+|.++ .++....... +|+.|++++|.+. ..+..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            4555555553211 22233455666666666666 3344344442 6666666666665 33344555666666666666


Q ss_pred             cccCCccccccCCCCccEEEccCCcCC
Q 003888          406 HLEGPIPVGFCQLYSLQILDISDNNIS  432 (788)
Q Consensus       406 ~~~~~~~~~~~~l~~L~~L~l~~n~~~  432 (788)
                      ++.. .+......+.|+.|++++|++.
T Consensus       174 ~l~~-l~~~~~~~~~L~~L~ls~N~i~  199 (394)
T COG4886         174 DLSD-LPKLLSNLSNLNNLDLSGNKIS  199 (394)
T ss_pred             hhhh-hhhhhhhhhhhhheeccCCccc
Confidence            6552 2332334555555555555554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.94  E-value=7.3e-10  Score=127.66  Aligned_cols=132  Identities=20%  Similarity=0.251  Sum_probs=81.5

Q ss_pred             CCCCCCccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCC--CCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCCh
Q 003888           15 FPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDST--LGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPW   92 (788)
Q Consensus        15 l~~~~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~--l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~   92 (788)
                      ..+....|...+  -++.+... +.+  ..++.|+.|-+.+|.  +    ..++...|..++.|++|||++|.--+.+|+
T Consensus       519 ~~~~~~~rr~s~--~~~~~~~~-~~~--~~~~~L~tLll~~n~~~l----~~is~~ff~~m~~LrVLDLs~~~~l~~LP~  589 (889)
T KOG4658|consen  519 VKSWNSVRRMSL--MNNKIEHI-AGS--SENPKLRTLLLQRNSDWL----LEISGEFFRSLPLLRVLDLSGNSSLSKLPS  589 (889)
T ss_pred             ccchhheeEEEE--eccchhhc-cCC--CCCCccceEEEeecchhh----hhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence            445556666666  55554322 111  145567777777764  4    445554566777777777777665556777


Q ss_pred             hhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCc
Q 003888           93 CLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANN  158 (788)
Q Consensus        93 ~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n  158 (788)
                      .++.+-+||+|+++++.+. .+|. .++++.+|.+||+..+.-...+ ......+++|++|.+-..
T Consensus       590 ~I~~Li~LryL~L~~t~I~-~LP~-~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  590 SIGELVHLRYLDLSDTGIS-HLPS-GLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRS  652 (889)
T ss_pred             HHhhhhhhhcccccCCCcc-ccch-HHHHHHhhheeccccccccccc-cchhhhcccccEEEeecc
Confidence            7777777777777777776 7777 6777777777777766543232 234444677777765443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.93  E-value=1.1e-10  Score=126.08  Aligned_cols=226  Identities=29%  Similarity=0.295  Sum_probs=126.6

Q ss_pred             ccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccE
Q 003888          367 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQ  446 (788)
Q Consensus       367 l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~  446 (788)
                      +..+++|+.|++.+|.+... ...+..+++|++|++++|.|+...  .+..++.|+.|++++|.+.....          
T Consensus        91 l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~~~----------  157 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDISG----------  157 (414)
T ss_pred             cccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhccC----------
Confidence            33444455555555544421 111344555555555555554332  23344445555555555542110          


Q ss_pred             EEccCcccccccCcccccCCCCCcEEEccCCcCCCCCC-ccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCC
Q 003888          447 VHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIP-NWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNN  525 (788)
Q Consensus       447 L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  525 (788)
                                      +..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+...  ..+..+..+..+++..|
T Consensus       158 ----------------~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n  218 (414)
T KOG0531|consen  158 ----------------LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDN  218 (414)
T ss_pred             ----------------CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccc
Confidence                            3335566666666666654333 1 35566666777777766522  22333444444466666


Q ss_pred             cCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccc--cccEEECCCCcc
Q 003888          526 NLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLS--LLSGLDLSCNKL  603 (788)
Q Consensus       526 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~Ls~n~l  603 (788)
                      .++...+...                                                      +.  .|+.+++++|++
T Consensus       219 ~i~~~~~l~~------------------------------------------------------~~~~~L~~l~l~~n~i  244 (414)
T KOG0531|consen  219 KISKLEGLNE------------------------------------------------------LVMLHLRELYLSGNRI  244 (414)
T ss_pred             cceeccCccc------------------------------------------------------chhHHHHHHhcccCcc
Confidence            6542211100                                                      11  277788888887


Q ss_pred             cccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCccccc---CCcc-ccCCCCCCEEEccCCcCcccC
Q 003888          604 IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGK---IPHQ-LVELKTLAVFSVAYNNLSGEI  679 (788)
Q Consensus       604 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L~l~~N~l~~~~  679 (788)
                      . ..+..+..+..+..|++++|++...  ..+...+.+..+....|.+...   .... ....+.++...+.+|+.....
T Consensus       245 ~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (414)
T KOG0531|consen  245 S-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS  321 (414)
T ss_pred             c-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence            7 3335677788888888888888865  5566777888888888887521   1111 455678888888888887665


Q ss_pred             CC
Q 003888          680 PE  681 (788)
Q Consensus       680 p~  681 (788)
                      +.
T Consensus       322 ~~  323 (414)
T KOG0531|consen  322 SL  323 (414)
T ss_pred             cc
Confidence            53

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.92  E-value=8.6e-10  Score=83.11  Aligned_cols=60  Identities=50%  Similarity=0.674  Sum_probs=35.7

Q ss_pred             cccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcc
Q 003888          592 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL  651 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  651 (788)
                      +|++|++++|++....+..|.++++|++|++++|+++.+.++.|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455666666666655555566666666666666666655555666666666666666553

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.91  E-value=2e-10  Score=112.06  Aligned_cols=234  Identities=18%  Similarity=0.174  Sum_probs=117.7

Q ss_pred             ccCCCCCCEEEcCCCcCCCCCchhHh---hcCCCCCEEEcCCCcccc----cC-------ccCcCCCCCccEEEcccCcC
Q 003888          196 LYHQHDLEDVRLSHVNMDGEFPNWLL---ENNTKLRQLYLVNDSLTG----PF-------RLPIHSHRWLRFLDVSNNNF  261 (788)
Q Consensus       196 l~~~~~L~~L~l~~~~~~~~~~~~~~---~~l~~L~~L~L~~~~l~~----~~-------~~~l~~~~~L~~L~L~~n~i  261 (788)
                      +..+..++.+++++|.+......++.   ...++|+..++++- ++|    .+       ..++..+++|+++|||+|-+
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF  104 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence            34456666666666666554443332   23344454444432 111    11       22445556677777777766


Q ss_pred             cccCChhhh---hcCCCCcEEEcccCcCCCCC-------------cccccCCCCCCEEEcccCcCCCccch----HHHhc
Q 003888          262 QGHIPVEIG---DILPSLISFNISMNALDSSI-------------PSSFGNMNFLQILDLSNNQLTGEIPE----HLAVS  321 (788)
Q Consensus       262 ~~~~~~~~~---~~l~~L~~L~L~~n~~~~~~-------------~~~~~~l~~L~~L~l~~n~i~~~i~~----~~~~~  321 (788)
                      .-..+..+.   +.+..|++|.|.+|.+...-             ..-.+.-+.|+++...+|++. ..+.    ..+..
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle-n~ga~~~A~~~~~  183 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE-NGGATALAEAFQS  183 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc-cccHHHHHHHHHh
Confidence            533333332   22456777777777654211             111233466777777777665 2221    22334


Q ss_pred             CCCCCEEEccCccCCCcC----cccCcCCCCCCEEeccCCcCCCc----CCccccCCCCCCEEEccCCcCCCCCcccc--
Q 003888          322 CVNLEFLALSNNNLKGHM----FSRNFNLTNLRSLQLEGNHLEGE----IPQSLSKCSSLEGLYLNNNSLSGKIPRWL--  391 (788)
Q Consensus       322 l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~~~--  391 (788)
                      .+.|+.+.+..|.|....    ...+..+++|+.|+|.+|-++..    +..++..+++|+.|++++|.+.......|  
T Consensus       184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~  263 (382)
T KOG1909|consen  184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD  263 (382)
T ss_pred             ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence            566666666666654322    12344566666666666655532    22344455566666666665554333222  


Q ss_pred             ---cCCCCCCEEeCCCCcccCCc----cccccCCCCccEEEccCCcC
Q 003888          392 ---GNLTGLKHIIMPENHLEGPI----PVGFCQLYSLQILDISDNNI  431 (788)
Q Consensus       392 ---~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~~  431 (788)
                         ...|.|+.+.+.+|.++...    ...+...+.|+.|++++|.+
T Consensus       264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  264 ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence               12455666666666554321    12233345556666666655

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.90  E-value=9.9e-10  Score=82.75  Aligned_cols=61  Identities=39%  Similarity=0.631  Sum_probs=58.0

Q ss_pred             ccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcC
Q 003888          615 TRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNL  675 (788)
Q Consensus       615 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l  675 (788)
                      ++|++|++++|+++.+.++.|.++++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5799999999999999889999999999999999999988889999999999999999985

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.80  E-value=6.5e-09  Score=119.93  Aligned_cols=272  Identities=24%  Similarity=0.258  Sum_probs=163.5

Q ss_pred             cCCCCCEEEcCCCcccccCccCcCCCCCccEEEcccCc--CcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCC
Q 003888          223 NNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNN--FQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFL  300 (788)
Q Consensus       223 ~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~--i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L  300 (788)
                      +....+...+-++.+.....  -..+++|++|-+.+|.  +. .++..++..+|.|++||+++|.--+.+|..++++-+|
T Consensus       521 ~~~~~rr~s~~~~~~~~~~~--~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L  597 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIEHIAG--SSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL  597 (889)
T ss_pred             chhheeEEEEeccchhhccC--CCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence            33556666666666543221  2234578888888886  44 7888888889999999999988778899999999999


Q ss_pred             CEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCC--CcCCccccCCCCCCEEEc
Q 003888          301 QILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLE--GEIPQSLSKCSSLEGLYL  378 (788)
Q Consensus       301 ~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~L  378 (788)
                      ++|++++..+. .+|..+. ++..|.+|++..+.-....+.....+++|++|.+......  ...-..+..+.+|+.+..
T Consensus       598 ryL~L~~t~I~-~LP~~l~-~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  598 RYLDLSDTGIS-HLPSGLG-NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             hcccccCCCcc-ccchHHH-HHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            99999999998 8999987 6899999999987665555666667899999998776422  122233344555555554


Q ss_pred             cCCcCCCCCcccccCCCCCC----EEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCC-------CCCccEE
Q 003888          379 NNNSLSGKIPRWLGNLTGLK----HIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFH-------PLSIEQV  447 (788)
Q Consensus       379 ~~n~i~~~~~~~~~~l~~L~----~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-------~~~L~~L  447 (788)
                      .....  .....+..++.|.    .+.+.++... ..+..+..+.+|+.|.+.++.+.+.......       ++++..+
T Consensus       676 ~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~  752 (889)
T KOG4658|consen  676 TISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKV  752 (889)
T ss_pred             ecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHH
Confidence            33322  1112233333333    3333332222 3345567788888888888877643322211       1123333


Q ss_pred             EccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCc
Q 003888          448 HLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLE  504 (788)
Q Consensus       448 ~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  504 (788)
                      .+.++.........  ...++|+.|.+..+.....+......+..+..+.+..+.+.
T Consensus       753 ~~~~~~~~r~l~~~--~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~  807 (889)
T KOG4658|consen  753 SILNCHMLRDLTWL--LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE  807 (889)
T ss_pred             Hhhccccccccchh--hccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence            33333221222111  12356666666666554444444444444544444444443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.78  E-value=6.8e-10  Score=120.06  Aligned_cols=218  Identities=28%  Similarity=0.294  Sum_probs=142.8

Q ss_pred             CCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEE
Q 003888          369 KCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVH  448 (788)
Q Consensus       369 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~  448 (788)
                      .+..++.+.++.|.+.. ....+..+++|+.+++.+|.+..+.. .+..+++|++|++++|.|+...+            
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~------------  135 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEG------------  135 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccccc------------
Confidence            44556666677776653 23345667777788888887774422 25667777777777777763321            


Q ss_pred             ccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccC-cccCCCCCCCEEEccCCcC
Q 003888          449 LSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVP-VQLCELNQLQLLDLSNNNL  527 (788)
Q Consensus       449 l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i  527 (788)
                                    +..++.|+.|++++|.+...  ..+..++.|+.+++++|.+....+ . ...+.+++.+.+.+|.+
T Consensus       136 --------------l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  136 --------------LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI  198 (414)
T ss_pred             --------------hhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence                          44556688888888888743  345567888888888888875443 2 46777888888888877


Q ss_pred             CCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccC
Q 003888          528 HGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHI  607 (788)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  607 (788)
                      .......                                                      .+..+..+++..|.++...
T Consensus       199 ~~i~~~~------------------------------------------------------~~~~l~~~~l~~n~i~~~~  224 (414)
T KOG0531|consen  199 REIEGLD------------------------------------------------------LLKKLVLLSLLDNKISKLE  224 (414)
T ss_pred             hcccchH------------------------------------------------------HHHHHHHhhcccccceecc
Confidence            5321110                                                      0123445577788877443


Q ss_pred             cccccCccc--CCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCc
Q 003888          608 PPQIGNLTR--IQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLS  676 (788)
Q Consensus       608 ~~~l~~l~~--L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~  676 (788)
                      +  +..+..  |+.+++++|++... +..+..+..+..|++++|++...  ..+...+.+..+....|++.
T Consensus       225 ~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  225 G--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA  290 (414)
T ss_pred             C--cccchhHHHHHHhcccCccccc-cccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence            3  223333  88899999988854 36677788889999999988743  23455566667777777765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=2.7e-09  Score=101.66  Aligned_cols=109  Identities=21%  Similarity=0.157  Sum_probs=65.2

Q ss_pred             CCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCCCCccEEEcccCc-CcccCChhhhhcCCCCcE
Q 003888          200 HDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNN-FQGHIPVEIGDILPSLIS  278 (788)
Q Consensus       200 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~-i~~~~~~~~~~~l~~L~~  278 (788)
                      +.++.+|++...++..-...++..|++|+.|.+.++++.+.+...+.+-.+|+.++++.+. ++.....-++..++.|.+
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            4477778877776655555556777788888888887777777777777777777777653 332222233444666667


Q ss_pred             EEcccCcCCCCCcc-cccC-CCCCCEEEcccC
Q 003888          279 FNISMNALDSSIPS-SFGN-MNFLQILDLSNN  308 (788)
Q Consensus       279 L~L~~n~~~~~~~~-~~~~-l~~L~~L~l~~n  308 (788)
                      |++++|......-. ...+ -++|+.|+++++
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~  296 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGY  296 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence            77776655432111 1111 134555555554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.46  E-value=2.9e-08  Score=93.49  Aligned_cols=223  Identities=18%  Similarity=0.206  Sum_probs=127.2

Q ss_pred             HHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCC---CCcC-------CChhhcCCCCCCEEECCCC
Q 003888           39 QIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNND---LRGS-------LPWCLANMTSLRILDVSSN  108 (788)
Q Consensus        39 ~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~---l~~~-------~~~~l~~l~~L~~L~Ls~n  108 (788)
                      +.+. .+..+..+|||+|.|++-...-....+++-.+|++.+++.--   ..+.       +..++-+|++|+..+||.|
T Consensus        24 eel~-~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN  102 (388)
T COG5238          24 EELE-MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN  102 (388)
T ss_pred             HHHH-hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence            3455 578888999999988531111122345667788888877532   2222       3345678899999999999


Q ss_pred             cCcCcCCh---hhhcCCCCCCEEECcCccccccCCccc-------------cccCCCCcEEEccCccccccccccccCCC
Q 003888          109 QLTGSISS---SPLVHLTSIEELMLSNNHFQIPISLEP-------------LFNHSRLKIFDAANNEIKAEITESHSLTA  172 (788)
Q Consensus       109 ~~~~~i~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~-------------l~~l~~L~~L~l~~n~~~~~~~~~~~~~~  172 (788)
                      .+.-..|+   ..+++-+.|+||.+++|.+- .+..+.             .++-+.|+.+.+..|++........    
T Consensus       103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~----  177 (388)
T COG5238         103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELS----  177 (388)
T ss_pred             ccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHH----
Confidence            88755554   24567789999999998763 222221             2344667777777776543211110    


Q ss_pred             CcccccEEEccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhH----hhcCCCCCEEEcCCCcccccC----ccC
Q 003888          173 PNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWL----LENNTKLRQLYLVNDSLTGPF----RLP  244 (788)
Q Consensus       173 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~----~~~l~~L~~L~L~~~~l~~~~----~~~  244 (788)
                                          ...+..-..|+++.+..|.+.......+    +..+.+|+.|++.+|.++...    ..+
T Consensus       178 --------------------a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~a  237 (388)
T COG5238         178 --------------------AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADA  237 (388)
T ss_pred             --------------------HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHH
Confidence                                1112222466777777776654322211    124566777777776665322    223


Q ss_pred             cCCCCCccEEEcccCcCcccCChhhhh-----cCCCCcEEEcccCcCC
Q 003888          245 IHSHRWLRFLDVSNNNFQGHIPVEIGD-----ILPSLISFNISMNALD  287 (788)
Q Consensus       245 l~~~~~L~~L~L~~n~i~~~~~~~~~~-----~l~~L~~L~L~~n~~~  287 (788)
                      +...+.|+.|.+.+|-++.....+++.     ..|+|..|-..+|.+.
T Consensus       238 l~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         238 LCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             hcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence            344455666666666655444333332     1355555555555543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=1.5e-09  Score=103.47  Aligned_cols=183  Identities=21%  Similarity=0.131  Sum_probs=116.2

Q ss_pred             CCCEEEcCCCCCCcC-CChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCcc-ccccCCccccccCCCCcE
Q 003888           75 HLQELYIDNNDLRGS-LPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH-FQIPISLEPLFNHSRLKI  152 (788)
Q Consensus        75 ~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L~~  152 (788)
                      .|++||||+..|+.. +-..++.|.+|+.|.+.++++.+.|-. .+.+-.+|+.||++.+. ++.....-.+.+|+.|.+
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            477888887776632 333466778888888888888766665 67777788888887764 221111124567788888


Q ss_pred             EEccCccccccccccccCCCCcccccEEEccCCCCCCC---CcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCE
Q 003888          153 FDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGV---TFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQ  229 (788)
Q Consensus       153 L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  229 (788)
                      |++++|....+.......... ..++.|++ +++.-.-   .+..--..+++|..||++.+.....-....+.+++.|++
T Consensus       265 LNlsWc~l~~~~Vtv~V~his-e~l~~LNl-sG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~  342 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHIS-ETLTQLNL-SGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH  342 (419)
T ss_pred             cCchHhhccchhhhHHHhhhc-hhhhhhhh-hhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence            888888766544222211111 26777777 5443211   122223478999999999886433222233458899999


Q ss_pred             EEcCCCccc-ccCccCcCCCCCccEEEcccCc
Q 003888          230 LYLVNDSLT-GPFRLPIHSHRWLRFLDVSNNN  260 (788)
Q Consensus       230 L~L~~~~l~-~~~~~~l~~~~~L~~L~L~~n~  260 (788)
                      |.++.|... ......+...+.|.+||..++-
T Consensus       343 lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  343 LSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             eehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            999988633 2223356788999999998763

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.44  E-value=1.2e-08  Score=108.55  Aligned_cols=111  Identities=27%  Similarity=0.325  Sum_probs=87.2

Q ss_pred             cccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCE
Q 003888          588 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAV  667 (788)
Q Consensus       588 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  667 (788)
                      ..++.++.|||++|+++...  .+..++.|++|||++|.++...--...++. |+.|.+++|.++..  ..+.++.+|+.
T Consensus       184 qll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~  258 (1096)
T KOG1859|consen  184 QLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYG  258 (1096)
T ss_pred             HHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhc
Confidence            34778999999999998654  789999999999999999965433444444 99999999999843  46789999999


Q ss_pred             EEccCCcCcccC-CCcccccCCCCccccCCCCCCCCC
Q 003888          668 FSVAYNNLSGEI-PEWTAQFATFNESSYEGNTFLCGL  703 (788)
Q Consensus       668 L~l~~N~l~~~~-p~~~~~~~~~~~~~~~gn~~~c~~  703 (788)
                      ||+++|-|.+-- -..+..+..+..+.++|||.-|..
T Consensus       259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             cchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            999999887521 112335566778899999988854

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.30  E-value=8.9e-08  Score=91.51  Aligned_cols=86  Identities=22%  Similarity=0.332  Sum_probs=51.7

Q ss_pred             CCCCCCEEEcCCCCCCc--CCChhhcCCCCCCEEECCCCcCcCcCChhhh-cCCCCCCEEECcCccccccCCccccccCC
Q 003888           72 SLMHLQELYIDNNDLRG--SLPWCLANMTSLRILDVSSNQLTGSISSSPL-VHLTSIEELMLSNNHFQIPISLEPLFNHS  148 (788)
Q Consensus        72 ~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~  148 (788)
                      ..++++.+||.+|.|++  ++...+.++|.|+.|+++.|++...|..  + ..+.+|++|-|.+..+.=......+..++
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP  146 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--CcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence            35667777777777764  2334456777777777777776532222  2 24457777777766554222223456677


Q ss_pred             CCcEEEccCcc
Q 003888          149 RLKIFDAANNE  159 (788)
Q Consensus       149 ~L~~L~l~~n~  159 (788)
                      .+++|+++.|.
T Consensus       147 ~vtelHmS~N~  157 (418)
T KOG2982|consen  147 KVTELHMSDNS  157 (418)
T ss_pred             hhhhhhhccch
Confidence            77777777763

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.23  E-value=2.8e-08  Score=105.88  Aligned_cols=128  Identities=24%  Similarity=0.324  Sum_probs=95.0

Q ss_pred             CccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCCC
Q 003888           20 SLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTS   99 (788)
Q Consensus        20 ~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~   99 (788)
                      .|.+.+.  ++|++.. .-+++. -++.|++|||++|++.    ...  .+..+++|++|||++|.+....--...++. 
T Consensus       165 ~L~~a~f--syN~L~~-mD~SLq-ll~ale~LnLshNk~~----~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-  233 (1096)
T KOG1859|consen  165 KLATASF--SYNRLVL-MDESLQ-LLPALESLNLSHNKFT----KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-  233 (1096)
T ss_pred             hHhhhhc--chhhHHh-HHHHHH-HHHHhhhhccchhhhh----hhH--HHHhcccccccccccchhccccccchhhhh-
Confidence            5566666  7777652 345566 6789999999999883    332  577889999999999998844222344555 


Q ss_pred             CCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCcccc
Q 003888          100 LRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIK  161 (788)
Q Consensus       100 L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~  161 (788)
                      |+.|++++|.++ ++-.  +.+|.+|+.||+++|-+.+.-....+..+..|+.|.+.||.+-
T Consensus       234 L~~L~lrnN~l~-tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  234 LQLLNLRNNALT-TLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             heeeeecccHHH-hhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            999999999887 5554  7888899999999998876555556677788888899888765

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.18  E-value=9.6e-08  Score=95.80  Aligned_cols=109  Identities=15%  Similarity=-0.005  Sum_probs=51.8

Q ss_pred             CCcEEeCCCCCCCCCCCCCCcccc-cCCCCCCEEEcCCCC-CCcCCChhh-cCCCCCCEEECCCC-cCcCcCChhhhcCC
Q 003888           47 SLKYLSMSDSTLGTNSSRILDQGL-CSLMHLQELYIDNND-LRGSLPWCL-ANMTSLRILDVSSN-QLTGSISSSPLVHL  122 (788)
Q Consensus        47 ~L~~L~Ls~~~l~~~~~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~~~~l-~~l~~L~~L~Ls~n-~~~~~i~~~~l~~l  122 (788)
                      .|+.|.++++.-.   +.-+-..+ .+++++++|++.+|. +++..-..+ ..|++|++|+|..| .++...-......+
T Consensus       139 ~lk~LSlrG~r~v---~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC  215 (483)
T KOG4341|consen  139 FLKELSLRGCRAV---GDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC  215 (483)
T ss_pred             ccccccccccccC---CcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence            5666666666432   11111122 356666776666665 332211122 35667777777664 23311111123456


Q ss_pred             CCCCEEECcCcc-ccccCCccccccCCCCcEEEccCc
Q 003888          123 TSIEELMLSNNH-FQIPISLEPLFNHSRLKIFDAANN  158 (788)
Q Consensus       123 ~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L~~L~l~~n  158 (788)
                      ++|++|+++.+. +++.--.....+++.++++...||
T Consensus       216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC  252 (483)
T KOG4341|consen  216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC  252 (483)
T ss_pred             hhHHHhhhccCchhhcCcchHHhccchhhhhhhhccc
Confidence            777777777664 222111123345555555555544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=5.4e-07  Score=86.30  Aligned_cols=221  Identities=20%  Similarity=0.163  Sum_probs=112.9

Q ss_pred             CCEEEcccCcCCCccc-hHHHhcCCCCCEEEccCccCCCcC--cccCcCCCCCCEEeccCCcCCCcCCccc-cCCCCCCE
Q 003888          300 LQILDLSNNQLTGEIP-EHLAVSCVNLEFLALSNNNLKGHM--FSRNFNLTNLRSLQLEGNHLEGEIPQSL-SKCSSLEG  375 (788)
Q Consensus       300 L~~L~l~~n~i~~~i~-~~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~  375 (788)
                      ++.+.+.++.|..... ..+...++.++++||.+|.|+...  ...+.++|.|+.|+++.|++...+. .+ ....+|+.
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~  125 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRV  125 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEE
Confidence            4445555554432211 223334667777777777776532  1223467777777777777663322 22 34567777


Q ss_pred             EEccCCcCCCC-CcccccCCCCCCEEeCCCCcccCC--ccccccCC-CCccEEEccCCcCCC---CCCCCCCCCCccEEE
Q 003888          376 LYLNNNSLSGK-IPRWLGNLTGLKHIIMPENHLEGP--IPVGFCQL-YSLQILDISDNNISG---SLPSCFHPLSIEQVH  448 (788)
Q Consensus       376 L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l-~~L~~L~l~~n~~~~---~~~~~~~~~~L~~L~  448 (788)
                      |-|.+..+.-. ....+..+|.+++|.++.|.....  ........ +.++++....|....   ...-.-.++++..+.
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~  205 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF  205 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence            77777665422 223345567777777777733211  11111111 244444444432110   000000134555566


Q ss_pred             ccCcccccccCcccccCCCCCcEEEccCCcCCCC-CCccccCCCCCCEEEccCCcCccccCc------ccCCCCCCCEEE
Q 003888          449 LSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGS-IPNWVDGLSQLSHLILGHNNLEGEVPV------QLCELNQLQLLD  521 (788)
Q Consensus       449 l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~  521 (788)
                      +..|.+...-....+..++.+.-|+|+.+++..- .-+.+.++++|..|.++++.+.+..-.      .++.+++++.|+
T Consensus       206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             eecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            6666554443333355556666777777776532 123456677777777777776533221      144566666655

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.03  E-value=5.6e-06  Score=56.74  Aligned_cols=36  Identities=36%  Similarity=0.609  Sum_probs=18.2

Q ss_pred             CCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCc
Q 003888           75 HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT  111 (788)
Q Consensus        75 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~  111 (788)
                      +|++|++++|+|+ .+|..+++|++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 33434555555555555555554

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.00  E-value=3.5e-07  Score=77.24  Aligned_cols=102  Identities=21%  Similarity=0.320  Sum_probs=58.3

Q ss_pred             ccEEECCCCcccccCcc---cccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEE
Q 003888          593 LSGLDLSCNKLIGHIPP---QIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFS  669 (788)
Q Consensus       593 L~~L~Ls~n~l~~~~~~---~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  669 (788)
                      +..+||+.|++. .++.   .+.....|+..+|++|.+....+..-...+.++.|++++|.|+ .+|.+++.++.|+.++
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence            455666666654 2222   2334445555677777666554444444456667777777776 5666666777777777


Q ss_pred             ccCCcCcccCCCcccccCCCCccccCCC
Q 003888          670 VAYNNLSGEIPEWTAQFATFNESSYEGN  697 (788)
Q Consensus       670 l~~N~l~~~~p~~~~~~~~~~~~~~~gn  697 (788)
                      +++|++.. .|..+.++.++..++..+|
T Consensus       107 l~~N~l~~-~p~vi~~L~~l~~Lds~~n  133 (177)
T KOG4579|consen  107 LRFNPLNA-EPRVIAPLIKLDMLDSPEN  133 (177)
T ss_pred             cccCcccc-chHHHHHHHhHHHhcCCCC
Confidence            77777663 3333444555555554444

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.99  E-value=4.1e-07  Score=91.40  Aligned_cols=300  Identities=17%  Similarity=0.116  Sum_probs=168.3

Q ss_pred             CccEEEcccCCcccccch-hHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccc-cCCCCCCEEEcCCCC-CCcCCCh-hhc
Q 003888           20 SLDHLDMVFARTALNTSF-LQIIRESMPSLKYLSMSDSTLGTNSSRILDQGL-CSLMHLQELYIDNND-LRGSLPW-CLA   95 (788)
Q Consensus        20 ~L~~L~L~~~~~~~~~~~-~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~~~-~l~   95 (788)
                      .|+.|.+  .+++-.+.- ...+...++++++|++.++...+  ..... .+ ..+++|++|+|..|. +++..-. -..
T Consensus       139 ~lk~LSl--rG~r~v~~sslrt~~~~CpnIehL~l~gc~~iT--d~s~~-sla~~C~~l~~l~L~~c~~iT~~~Lk~la~  213 (483)
T KOG4341|consen  139 FLKELSL--RGCRAVGDSSLRTFASNCPNIEHLALYGCKKIT--DSSLL-SLARYCRKLRHLNLHSCSSITDVSLKYLAE  213 (483)
T ss_pred             ccccccc--cccccCCcchhhHHhhhCCchhhhhhhcceecc--HHHHH-HHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence            5777777  777654432 23344478888888888876421  11111 22 357788888888864 4433222 234


Q ss_pred             CCCCCCEEECCCCc-CcC-cCChhhhcCCCCCCEEECcCccccccCCcccc----ccCCCCcEEEccCcccccccccccc
Q 003888           96 NMTSLRILDVSSNQ-LTG-SISSSPLVHLTSIEELMLSNNHFQIPISLEPL----FNHSRLKIFDAANNEIKAEITESHS  169 (788)
Q Consensus        96 ~l~~L~~L~Ls~n~-~~~-~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l----~~l~~L~~L~l~~n~~~~~~~~~~~  169 (788)
                      .+++|++|+++.+. +++ .+.. ...++..++.+.+.+|.-   .+.+.+    +.+..+.++++..+....+.. ...
T Consensus       214 gC~kL~~lNlSwc~qi~~~gv~~-~~rG~~~l~~~~~kGC~e---~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~-~~~  288 (483)
T KOG4341|consen  214 GCRKLKYLNLSWCPQISGNGVQA-LQRGCKELEKLSLKGCLE---LELEALLKAAAYCLEILKLNLQHCNQLTDED-LWL  288 (483)
T ss_pred             hhhhHHHhhhccCchhhcCcchH-Hhccchhhhhhhhccccc---ccHHHHHHHhccChHhhccchhhhccccchH-HHH
Confidence            67888888888774 332 1222 355666677776665531   111111    233444555544443221111 111


Q ss_pred             CCCCcccccEEEccCCCCCCCC-cCccc-cCCCCCCEEEcCCCc-CCCCCchhHhhcCCCCCEEEcCCCccc--ccCccC
Q 003888          170 LTAPNFQLQALSLSSGYGDGVT-FPKFL-YHQHDLEDVRLSHVN-MDGEFPNWLLENNTKLRQLYLVNDSLT--GPFRLP  244 (788)
Q Consensus       170 ~~~~~~~L~~L~l~~~~~~~~~-~~~~l-~~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~L~~~~l~--~~~~~~  244 (788)
                      .......++.+.. .++...+. .-..+ .+.++|+.+.+++|+ ++...-..+..+++.|+.+++..+...  +.+...
T Consensus       289 i~~~c~~lq~l~~-s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl  367 (483)
T KOG4341|consen  289 IACGCHALQVLCY-SSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL  367 (483)
T ss_pred             HhhhhhHhhhhcc-cCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh
Confidence            1122235666666 33332222 22223 467889999999887 333333344467889999999887654  234445


Q ss_pred             cCCCCCccEEEcccCcC-cccC---ChhhhhcCCCCcEEEcccCcCC-CCCcccccCCCCCCEEEcccCcCCCc-cchHH
Q 003888          245 IHSHRWLRFLDVSNNNF-QGHI---PVEIGDILPSLISFNISMNALD-SSIPSSFGNMNFLQILDLSNNQLTGE-IPEHL  318 (788)
Q Consensus       245 l~~~~~L~~L~L~~n~i-~~~~---~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~l~~n~i~~~-i~~~~  318 (788)
                      -..++.|+.+.++.+.. ++..   -......+..+..+.+++++.. ......+..+++|+.+++.+++-... --..+
T Consensus       368 s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~  447 (483)
T KOG4341|consen  368 SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRF  447 (483)
T ss_pred             ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHH
Confidence            56788999999998753 2220   0111223568999999998754 33344577889999999988853212 22233


Q ss_pred             HhcCCCCCEEEc
Q 003888          319 AVSCVNLEFLAL  330 (788)
Q Consensus       319 ~~~l~~L~~L~L  330 (788)
                      ...+|+++...+
T Consensus       448 ~~~lp~i~v~a~  459 (483)
T KOG4341|consen  448 ATHLPNIKVHAY  459 (483)
T ss_pred             HhhCccceehhh
Confidence            345666665443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.96  E-value=2.9e-07  Score=77.79  Aligned_cols=59  Identities=27%  Similarity=0.479  Sum_probs=27.8

Q ss_pred             cCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCc
Q 003888          616 RIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLS  676 (788)
Q Consensus       616 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~  676 (788)
                      ..+.|++++|+|++. |..+..++.|+.|+++.|++. ..|+-+..+.+|-.|+..+|...
T Consensus        78 t~t~lNl~~neisdv-PeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   78 TATTLNLANNEISDV-PEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             hhhhhhcchhhhhhc-hHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            444455555555432 333444555555555555544 34444444444445554444443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.94  E-value=1.6e-06  Score=97.80  Aligned_cols=108  Identities=25%  Similarity=0.367  Sum_probs=55.9

Q ss_pred             CCCcEEeCCCCCCCCCCCCCCccccc-CCCCCCEEEcCCCCCCcC-CChhhcCCCCCCEEECCCCcCcCcCChhhhcCCC
Q 003888           46 PSLKYLSMSDSTLGTNSSRILDQGLC-SLMHLQELYIDNNDLRGS-LPWCLANMTSLRILDVSSNQLTGSISSSPLVHLT  123 (788)
Q Consensus        46 ~~L~~L~Ls~~~l~~~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~  123 (788)
                      .+|++||+++....   ..-.+..++ .+|+|+.|.+++-.+... ......++++|..||+|+++++ .+.  .+++|+
T Consensus       122 ~nL~~LdI~G~~~~---s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl~--GIS~Lk  195 (699)
T KOG3665|consen  122 QNLQHLDISGSELF---SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NLS--GISRLK  195 (699)
T ss_pred             HhhhhcCccccchh---hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-CcH--HHhccc
Confidence            46666666664432   111111232 366666666666554322 2233445666666666666665 442  366666


Q ss_pred             CCCEEECcCccccccCCccccccCCCCcEEEccCcc
Q 003888          124 SIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNE  159 (788)
Q Consensus       124 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~  159 (788)
                      +|++|.+.+=.+........+-++++|+.||+|...
T Consensus       196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence            666666655444432222345556666666666543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.93  E-value=2e-05  Score=71.73  Aligned_cols=131  Identities=23%  Similarity=0.330  Sum_probs=82.6

Q ss_pred             CcEEeCCCCCCCCCCCCCCccccc-CCCCCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCC
Q 003888           48 LKYLSMSDSTLGTNSSRILDQGLC-SLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIE  126 (788)
Q Consensus        48 L~~L~Ls~~~l~~~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~  126 (788)
                      =+.++|.+.++.    .+..  ++ -+.....+||++|++...  ..|..+++|..|.|++|.|+ .|....-.-+++|+
T Consensus        21 e~e~~LR~lkip----~ien--lg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~   91 (233)
T KOG1644|consen   21 ERELDLRGLKIP----VIEN--LGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLK   91 (233)
T ss_pred             cccccccccccc----chhh--ccccccccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccc
Confidence            345666665552    2221  22 234566788888877643  34777788888888888887 66653334466788


Q ss_pred             EEECcCccccccCCccccccCCCCcEEEccCccccccccccccCCCCcccccEEEccCCCCCCCCcCccccCCCCCCEEE
Q 003888          127 ELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVR  206 (788)
Q Consensus       127 ~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  206 (788)
                      .|.+.+|.+........+..|++|++|.+-+|++...                    .++.     -..+..+++|+.||
T Consensus        92 ~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k--------------------~~YR-----~yvl~klp~l~~LD  146 (233)
T KOG1644|consen   92 TLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHK--------------------KNYR-----LYVLYKLPSLRTLD  146 (233)
T ss_pred             eEEecCcchhhhhhcchhccCCccceeeecCCchhcc--------------------cCce-----eEEEEecCcceEee
Confidence            8888888877444445677788888888888876531                    1111     12345677888888


Q ss_pred             cCCCcC
Q 003888          207 LSHVNM  212 (788)
Q Consensus       207 l~~~~~  212 (788)
                      .++...
T Consensus       147 F~kVt~  152 (233)
T KOG1644|consen  147 FQKVTR  152 (233)
T ss_pred             hhhhhH
Confidence            777543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.92  E-value=1.3e-06  Score=82.74  Aligned_cols=222  Identities=21%  Similarity=0.231  Sum_probs=141.8

Q ss_pred             CCCCCCccEEEcccCCcccccch----hHHHhhcCCCCcEEeCCCCCCCCCCCCCCc------ccccCCCCCCEEEcCCC
Q 003888           15 FPHFKSLDHLDMVFARTALNTSF----LQIIRESMPSLKYLSMSDSTLGTNSSRILD------QGLCSLMHLQELYIDNN   84 (788)
Q Consensus        15 l~~~~~L~~L~L~~~~~~~~~~~----~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~------~~~~~l~~L~~L~Ls~n   84 (788)
                      +..+..+..++|  |+|.+..+-    +..++ +-++|++-+++.-..+..-..++.      .++.++|+|+..+||.|
T Consensus        26 l~~~d~~~evdL--SGNtigtEA~e~l~~~ia-~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN  102 (388)
T COG5238          26 LEMMDELVEVDL--SGNTIGTEAMEELCNVIA-NVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN  102 (388)
T ss_pred             HHhhcceeEEec--cCCcccHHHHHHHHHHHh-hhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence            455778899999  999987654    44455 668888888887544211122221      35678999999999999


Q ss_pred             CCCcCCChh----hcCCCCCCEEECCCCcCcCcCChhhh-------------cCCCCCCEEECcCccccccC---Ccccc
Q 003888           85 DLRGSLPWC----LANMTSLRILDVSSNQLTGSISSSPL-------------VHLTSIEELMLSNNHFQIPI---SLEPL  144 (788)
Q Consensus        85 ~l~~~~~~~----l~~l~~L~~L~Ls~n~~~~~i~~~~l-------------~~l~~L~~L~Ls~n~l~~~~---~~~~l  144 (788)
                      .+....|..    ++.-+.|+||.+++|.+. .+...-+             ..-|.|++.....|++....   ....+
T Consensus       103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l  181 (388)
T COG5238         103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALL  181 (388)
T ss_pred             ccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHH
Confidence            988665544    567799999999999874 4443222             24578999999999876321   11233


Q ss_pred             ccCCCCcEEEccCccccccccccccCCCCcccccEEEccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhH---h
Q 003888          145 FNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWL---L  221 (788)
Q Consensus       145 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~  221 (788)
                      .....|+++.+..|.|....            ++.|           +-..+..+++|+.||+..|.++-.....+   +
T Consensus       182 ~sh~~lk~vki~qNgIrpeg------------v~~L-----------~~~gl~y~~~LevLDlqDNtft~~gS~~La~al  238 (388)
T COG5238         182 ESHENLKEVKIQQNGIRPEG------------VTML-----------AFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL  238 (388)
T ss_pred             HhhcCceeEEeeecCcCcch------------hHHH-----------HHHHHHHhCcceeeeccccchhhhhHHHHHHHh
Confidence            34467888888777664210            1111           11234567888888888887664333322   2


Q ss_pred             hcCCCCCEEEcCCCcccccCcc----Cc--CCCCCccEEEcccCcCcc
Q 003888          222 ENNTKLRQLYLVNDSLTGPFRL----PI--HSHRWLRFLDVSNNNFQG  263 (788)
Q Consensus       222 ~~l~~L~~L~L~~~~l~~~~~~----~l--~~~~~L~~L~L~~n~i~~  263 (788)
                      ...+.|++|.+.+|-+......    .+  ...++|..|...+|.+.+
T Consensus       239 ~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         239 CEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             cccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence            3345578888888876543221    11  235677778888876654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.90  E-value=2.6e-05  Score=71.00  Aligned_cols=129  Identities=19%  Similarity=0.255  Sum_probs=95.5

Q ss_pred             ccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCCCC
Q 003888           21 LDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSL  100 (788)
Q Consensus        21 L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  100 (788)
                      =+.++|  .+.++....  .++.-......+||++|.+    ..++  .|..++.|.+|.|.+|+|+.+-|.--..+++|
T Consensus        21 e~e~~L--R~lkip~ie--nlg~~~d~~d~iDLtdNdl----~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l   90 (233)
T KOG1644|consen   21 ERELDL--RGLKIPVIE--NLGATLDQFDAIDLTDNDL----RKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNL   90 (233)
T ss_pred             cccccc--ccccccchh--hccccccccceecccccch----hhcc--cCCCccccceEEecCCcceeeccchhhhcccc
Confidence            456666  665543221  1222346788999999998    5554  48899999999999999998877766678899


Q ss_pred             CEEECCCCcCcCcCCh-hhhcCCCCCCEEECcCcccccc--CCccccccCCCCcEEEccCccc
Q 003888          101 RILDVSSNQLTGSISS-SPLVHLTSIEELMLSNNHFQIP--ISLEPLFNHSRLKIFDAANNEI  160 (788)
Q Consensus       101 ~~L~Ls~n~~~~~i~~-~~l~~l~~L~~L~Ls~n~l~~~--~~~~~l~~l~~L~~L~l~~n~~  160 (788)
                      +.|.|.+|.+. .+.+ ..+..|++|++|.+-+|..+..  .-.-.+..+++|+.||+..-..
T Consensus        91 ~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen   91 KTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             ceEEecCcchh-hhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            99999999987 3332 2478899999999999987622  2223567889999999876543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.82  E-value=1.5e-05  Score=90.03  Aligned_cols=138  Identities=20%  Similarity=0.309  Sum_probs=98.3

Q ss_pred             CCccEEEcccCCccc-ccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCC
Q 003888           19 KSLDHLDMVFARTAL-NTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANM   97 (788)
Q Consensus        19 ~~L~~L~L~~~~~~~-~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l   97 (788)
                      .+|++||+  ++... +..=+..++..+|+|+.|.+++-.+..  .+. ..-..++++|+.||+|++.++..  .+++++
T Consensus       122 ~nL~~LdI--~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~--~dF-~~lc~sFpNL~sLDIS~TnI~nl--~GIS~L  194 (699)
T KOG3665|consen  122 QNLQHLDI--SGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN--DDF-SQLCASFPNLRSLDISGTNISNL--SGISRL  194 (699)
T ss_pred             HhhhhcCc--cccchhhccHHHHHhhhCcccceEEecCceecc--hhH-HHHhhccCccceeecCCCCccCc--HHHhcc
Confidence            47888999  77543 222345666689999999999977641  222 22456899999999999999855  789999


Q ss_pred             CCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccC--C---ccccccCCCCcEEEccCcccccc
Q 003888           98 TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPI--S---LEPLFNHSRLKIFDAANNEIKAE  163 (788)
Q Consensus        98 ~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~--~---~~~l~~l~~L~~L~l~~n~~~~~  163 (788)
                      ++|++|.+.+-.+...-.-..+.+|++|++||+|........  .   .+--..+++||.||.|+..+...
T Consensus       195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            999999999888762122225788999999999987543211  0   11123478999999998876654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.80  E-value=1.5e-05  Score=54.63  Aligned_cols=36  Identities=42%  Similarity=0.727  Sum_probs=16.5

Q ss_pred             cCCeEeCCCCcCCccCCccccCCCCCCEEECcCCccc
Q 003888          616 RIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN  652 (788)
Q Consensus       616 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  652 (788)
                      +|++|++++|+|+.+ |..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCC
Confidence            445555555555533 223455555555555555554

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.70  E-value=7e-05  Score=66.55  Aligned_cols=121  Identities=21%  Similarity=0.292  Sum_probs=39.5

Q ss_pred             ccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCC
Q 003888          294 FGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSL  373 (788)
Q Consensus       294 ~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  373 (788)
                      |.++++|+.+.+.. .+. .++...|.++++|+.+.+..+ +..+....|.++++++.+.+.+ .+.......|..++++
T Consensus         8 F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            44444444444442 233 344444444444444444442 4443444444444455555543 2222333344445555


Q ss_pred             CEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCc
Q 003888          374 EGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSL  421 (788)
Q Consensus       374 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  421 (788)
                      +.+++..+ +.......|.++ .++.+.+.. .+..+....|.++++|
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            55555433 332333344444 555555543 2222333444444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.70  E-value=7e-05  Score=66.55  Aligned_cols=122  Identities=24%  Similarity=0.281  Sum_probs=47.5

Q ss_pred             hhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCC
Q 003888          269 IGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTN  348 (788)
Q Consensus       269 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~  348 (788)
                      .+..+++|+.+.+.. .+..+...+|.++++|+.+.+.++ +. .++...+.++++++.+.+.. .+..+....|..+++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence            333344555555543 333344445555555555555553 43 55555555555566666643 444444445555666


Q ss_pred             CCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCC
Q 003888          349 LRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGL  397 (788)
Q Consensus       349 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L  397 (788)
                      |+.+.+..+ +.......|.++ +++.+.+.. .+.......|.++++|
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            666666543 333444555555 666666654 3333444555555554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.63  E-value=0.00016  Score=75.24  Aligned_cols=32  Identities=19%  Similarity=0.359  Sum_probs=15.7

Q ss_pred             ccCCeEeCCCCcCCccCCccccCCCCCCEEECcCC
Q 003888          615 TRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN  649 (788)
Q Consensus       615 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  649 (788)
                      ++|++|++++|.... .|..+.  .+|+.|+++.|
T Consensus       156 sSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCccc-Cccccc--ccCcEEEeccc
Confidence            355566665555442 233232  45556665554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.36  E-value=0.00063  Score=70.88  Aligned_cols=137  Identities=13%  Similarity=0.186  Sum_probs=88.5

Q ss_pred             ccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCccccc
Q 003888          463 FFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE  542 (788)
Q Consensus       463 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  542 (788)
                      +..+.+++.|++++|.++ .+|. +  .++|++|.+++|.--...|+.+  .++|+.|++++|.-...+           
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-----------  110 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-----------  110 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-----------
Confidence            345788999999999887 4452 2  2579999998865444666544  258999999988322111           


Q ss_pred             ccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccc--cCcccccCcccCCeE
Q 003888          543 SSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG--HIPPQIGNLTRIQTL  620 (788)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L  620 (788)
                                                                     +++|+.|+++++....  .+|      ++|+.|
T Consensus       111 -----------------------------------------------P~sLe~L~L~~n~~~~L~~LP------ssLk~L  137 (426)
T PRK15386        111 -----------------------------------------------PESVRSLEIKGSATDSIKNVP------NGLTSL  137 (426)
T ss_pred             -----------------------------------------------ccccceEEeCCCCCcccccCc------chHhhe
Confidence                                                           3467788887766431  233      357778


Q ss_pred             eCCCCc-CCc-cCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCc
Q 003888          621 NLSHNN-LTG-LIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNN  674 (788)
Q Consensus       621 ~Ls~N~-l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~  674 (788)
                      .+.+++ ... ..|..+  -++|++|++++|... ..|..+.  .+|+.|+++.|.
T Consensus       138 ~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        138 SINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             ecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence            775433 111 111111  168999999999876 4454433  589999998874

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.17  E-value=9.7e-05  Score=70.50  Aligned_cols=103  Identities=22%  Similarity=0.327  Sum_probs=62.5

Q ss_pred             cCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCC--CCCcCCChhhcCCCCCCEEECCCCcCc--CcCChhhh
Q 003888           44 SMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNN--DLRGSLPWCLANMTSLRILDVSSNQLT--GSISSSPL  119 (788)
Q Consensus        44 ~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~Ls~n~~~--~~i~~~~l  119 (788)
                      .+..|+.|++.+..++    ++  ..+-.|++|++|.+|.|  ++.+.++--...+++|++|++++|++.  .+++  .+
T Consensus        41 ~~~~le~ls~~n~glt----t~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~--pl  112 (260)
T KOG2739|consen   41 EFVELELLSVINVGLT----TL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR--PL  112 (260)
T ss_pred             cccchhhhhhhcccee----ec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc--hh
Confidence            5556777777766653    22  23556778888888888  566555555566688888888888775  1222  25


Q ss_pred             cCCCCCCEEECcCccccccCC--ccccccCCCCcEEE
Q 003888          120 VHLTSIEELMLSNNHFQIPIS--LEPLFNHSRLKIFD  154 (788)
Q Consensus       120 ~~l~~L~~L~Ls~n~l~~~~~--~~~l~~l~~L~~L~  154 (788)
                      ..+.+|..|++.+|..+....  -..+.-+++|++|+
T Consensus       113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            666777777777776442110  11234455666554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.04  E-value=7e-05  Score=83.76  Aligned_cols=61  Identities=30%  Similarity=0.240  Sum_probs=26.8

Q ss_pred             CCCCcEEEcccCc-CCCCCcccccC-CCCCCEEEcccCc-CCCccchHHHhcCCCCCEEEccCc
Q 003888          273 LPSLISFNISMNA-LDSSIPSSFGN-MNFLQILDLSNNQ-LTGEIPEHLAVSCVNLEFLALSNN  333 (788)
Q Consensus       273 l~~L~~L~L~~n~-~~~~~~~~~~~-l~~L~~L~l~~n~-i~~~i~~~~~~~l~~L~~L~L~~n  333 (788)
                      +++|+.|+++++. ++...-..++. +++|++|.+.++. +++..-..+...+++|++|+++++
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c  305 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC  305 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence            4455555555544 33222222222 4555555544444 333333333344555555555544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.98  E-value=2.5e-05  Score=74.51  Aligned_cols=79  Identities=25%  Similarity=0.262  Sum_probs=35.3

Q ss_pred             CCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEE
Q 003888           75 HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFD  154 (788)
Q Consensus        75 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~  154 (788)
                      +.+.|+..+|+++++  +...+++.|++|.||-|.|+ ++..  +..|++|++|+|..|.|........+.++++|+.|.
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            344444444444433  22334444444444444444 3332  444445555555444444322223344445555554


Q ss_pred             ccCc
Q 003888          155 AANN  158 (788)
Q Consensus       155 l~~n  158 (788)
                      +..|
T Consensus        95 L~EN   98 (388)
T KOG2123|consen   95 LDEN   98 (388)
T ss_pred             hccC
Confidence            4444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.90  E-value=0.00066  Score=64.96  Aligned_cols=90  Identities=22%  Similarity=0.255  Sum_probs=69.3

Q ss_pred             cccCCCCCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCC--cCcCcCChhhhcCCCCCCEEECcCccccccCCcccccc
Q 003888           69 GLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSN--QLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFN  146 (788)
Q Consensus        69 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n--~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~  146 (788)
                      ..-.+..|+.|++.+..++..  ..|..+++|+.|++|.|  .+++.++. ....+++|++|++++|++...-....+..
T Consensus        38 l~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~  114 (260)
T KOG2739|consen   38 LTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKE  114 (260)
T ss_pred             ccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhh
Confidence            344677888888888887744  34778899999999999  66666666 45677999999999999885444456777


Q ss_pred             CCCCcEEEccCcccc
Q 003888          147 HSRLKIFDAANNEIK  161 (788)
Q Consensus       147 l~~L~~L~l~~n~~~  161 (788)
                      +.+|..|++..|...
T Consensus       115 l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  115 LENLKSLDLFNCSVT  129 (260)
T ss_pred             hcchhhhhcccCCcc
Confidence            888888888877644

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.88  E-value=0.00019  Score=80.22  Aligned_cols=241  Identities=23%  Similarity=0.149  Sum_probs=114.8

Q ss_pred             cCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCC-CCCcC----CChhhcCCCCCCEEECCCCc-CcCcCChh
Q 003888           44 SMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNN-DLRGS----LPWCLANMTSLRILDVSSNQ-LTGSISSS  117 (788)
Q Consensus        44 ~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~-~~~~i~~~  117 (788)
                      .++.|+.|.+.++.-....+ + .......++|+.|+++++ .....    .......+++|+.|+++++. ++ ...-.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~-~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is-d~~l~  262 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDS-L-DALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT-DIGLS  262 (482)
T ss_pred             hCchhhHhhhcccccCChhh-H-HHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC-chhHH
Confidence            46777777777664321101 1 123456677777777662 11111    11233455777777777766 44 22222


Q ss_pred             hhc-CCCCCCEEECcCcc-ccccCCccccccCCCCcEEEccCccccccccccccCCCCcccccEEEccCCCCCCCCcCcc
Q 003888          118 PLV-HLTSIEELMLSNNH-FQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKF  195 (788)
Q Consensus       118 ~l~-~l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  195 (788)
                      .+. .+++|++|.+.++. ++...-.....++++|++|+++++....+..-... .....+++.+.+ ..          
T Consensus       263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~-~~----------  330 (482)
T KOG1947|consen  263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKL-LS----------  330 (482)
T ss_pred             HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhh-hh----------
Confidence            232 36677777766665 34222222334566677777776654321111000 111223333332 11          


Q ss_pred             ccCCCCCCEEEcCCCcCCC--CCchhHhhcCCCCCEEEcCCCcccccC-ccCcCCCCCccEEEcccCcCcccCChhhhhc
Q 003888          196 LYHQHDLEDVRLSHVNMDG--EFPNWLLENNTKLRQLYLVNDSLTGPF-RLPIHSHRWLRFLDVSNNNFQGHIPVEIGDI  272 (788)
Q Consensus       196 l~~~~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~L~~~~l~~~~-~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~  272 (788)
                      ...+..++.+.+.++....  .........+++++.+.+..+...... ...+..++.|+ ..+....          ..
T Consensus       331 ~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~~----------~~  399 (482)
T KOG1947|consen  331 LNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELRL----------CR  399 (482)
T ss_pred             cCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHHh----------cc
Confidence            1114455555555443322  333444567788888888777744322 23445555552 2211110          11


Q ss_pred             CCCCcEEEcccCcCCCCC-cccccC-CCCCCEEEcccCcC
Q 003888          273 LPSLISFNISMNALDSSI-PSSFGN-MNFLQILDLSNNQL  310 (788)
Q Consensus       273 l~~L~~L~L~~n~~~~~~-~~~~~~-l~~L~~L~l~~n~i  310 (788)
                      ...++.|+++.+...... -..... +..++.+++.++..
T Consensus       400 ~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  400 SDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             CCccceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence            223778888777643211 111111 55667777776654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.61  E-value=9.2e-05  Score=70.71  Aligned_cols=101  Identities=23%  Similarity=0.170  Sum_probs=66.0

Q ss_pred             CCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCcCCh-hhhcCCC
Q 003888           45 MPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISS-SPLVHLT  123 (788)
Q Consensus        45 l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~i~~-~~l~~l~  123 (788)
                      +.+.+.|+.-+|.+.    .|.  ...+++.|++|.||-|+|+..-  .+..|++|++|.|..|.|. ++.+ .-+.+++
T Consensus        18 l~~vkKLNcwg~~L~----DIs--ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlp   88 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLD----DIS--ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLP   88 (388)
T ss_pred             HHHhhhhcccCCCcc----HHH--HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCc
Confidence            446677777777773    332  1346777888888888777553  3777888888888888776 4443 2357778


Q ss_pred             CCCEEECcCccccccCCc----cccccCCCCcEEE
Q 003888          124 SIEELMLSNNHFQIPISL----EPLFNHSRLKIFD  154 (788)
Q Consensus       124 ~L~~L~Ls~n~l~~~~~~----~~l~~l~~L~~L~  154 (788)
                      +|++|-|..|.-.+..+.    ..+.-+++|++||
T Consensus        89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            888888887765543332    1345567777665

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.57  E-value=0.014  Score=33.10  Aligned_cols=11  Identities=64%  Similarity=0.658  Sum_probs=4.5

Q ss_pred             CEEECcCCccc
Q 003888          642 ESLDLSYNKLN  652 (788)
Q Consensus       642 ~~L~Ls~N~l~  652 (788)
                      ++||+++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            34444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.31  E-value=0.018  Score=32.60  Aligned_cols=12  Identities=58%  Similarity=0.769  Sum_probs=6.5

Q ss_pred             CCeEeCCCCcCC
Q 003888          617 IQTLNLSHNNLT  628 (788)
Q Consensus       617 L~~L~Ls~N~l~  628 (788)
                      |++|||++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            455555555555

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>TIGR00864 PCC polycystin cation channel protein

Probab=93.51  E-value=0.039  Score=69.88  Aligned_cols=76  Identities=13%  Similarity=0.110  Sum_probs=44.9

Q ss_pred             ECcCCcccccCCccccCCCCCCEEEccCCcCcccCCC-cccccCCCCccccCCCCCCCCCCCCCCCCCCCCCcccCCCCC
Q 003888          645 DLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPE-WTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNER  723 (788)
Q Consensus       645 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~~~gn~~~c~~~l~~c~~~~~~~~~~~~~~~  723 (788)
                      ||++|+|+...+..|..+++|+.|+|++|++.|.+.- |+.+|..-....+.      ......|..|...+++++....
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~------~~~~i~CasP~~LrG~~L~~l~   74 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVR------QPEAALCAGPGALAGQPLLGIP   74 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCcccc------CCcccCCCCChHHCCCCcccCC
Confidence            5788888866667777788888888888877765431 22222111111000      0011258888888888776665


Q ss_pred             CCC
Q 003888          724 DDN  726 (788)
Q Consensus       724 ~~~  726 (788)
                      .++
T Consensus        75 ~~d   77 (2740)
T TIGR00864        75 LLD   77 (2740)
T ss_pred             ccc
Confidence            544

Note: this model has been restricted to the amino half because for technical reasons.

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.17  E-value=0.00065  Score=73.66  Aligned_cols=87  Identities=29%  Similarity=0.302  Sum_probs=44.5

Q ss_pred             CcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChh----hcCC-CCCCEEECCCCcCcCc----CChhh
Q 003888           48 LKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWC----LANM-TSLRILDVSSNQLTGS----ISSSP  118 (788)
Q Consensus        48 L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----l~~l-~~L~~L~Ls~n~~~~~----i~~~~  118 (788)
                      +..|.|.+|.+.+.+......++...++|+.|+++.|.+.+..-..    +... ..|++|++..|.+++.    +.. .
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~-~  167 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA-V  167 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH-H
Confidence            5566666666653333333334555666666666666665432111    2222 4455566666665521    222 3


Q ss_pred             hcCCCCCCEEECcCccc
Q 003888          119 LVHLTSIEELMLSNNHF  135 (788)
Q Consensus       119 l~~l~~L~~L~Ls~n~l  135 (788)
                      +.....++.+|++.|.+
T Consensus       168 L~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGL  184 (478)
T ss_pred             HhcccchhHHHHHhccc
Confidence            44455666666666654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.44  E-value=0.078  Score=27.76  Aligned_cols=11  Identities=64%  Similarity=0.939  Sum_probs=3.3

Q ss_pred             CCEEECCCCcC
Q 003888          100 LRILDVSSNQL  110 (788)
Q Consensus       100 L~~L~Ls~n~~  110 (788)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            34444444443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.60  E-value=0.18  Score=29.84  Aligned_cols=22  Identities=41%  Similarity=0.665  Sum_probs=13.5

Q ss_pred             CCCCCEEECCCCcCcCcCChhhh
Q 003888           97 MTSLRILDVSSNQLTGSISSSPL  119 (788)
Q Consensus        97 l~~L~~L~Ls~n~~~~~i~~~~l  119 (788)
                      +++|++|+|++|++. .+|...|
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            356666777777666 6665443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.60  E-value=0.18  Score=29.84  Aligned_cols=22  Identities=41%  Similarity=0.665  Sum_probs=13.5

Q ss_pred             CCCCCEEECCCCcCcCcCChhhh
Q 003888           97 MTSLRILDVSSNQLTGSISSSPL  119 (788)
Q Consensus        97 l~~L~~L~Ls~n~~~~~i~~~~l  119 (788)
                      +++|++|+|++|++. .+|...|
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            356666777777666 6665443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.26  E-value=0.052  Score=50.13  Aligned_cols=80  Identities=21%  Similarity=0.245  Sum_probs=55.3

Q ss_pred             CccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCccc---cc-CCCCCCEEEcCCCC-CCcCCChhh
Q 003888           20 SLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQG---LC-SLMHLQELYIDNND-LRGSLPWCL   94 (788)
Q Consensus        20 ~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~---~~-~l~~L~~L~Ls~n~-l~~~~~~~l   94 (788)
                      .++.+|-  +++.+..+..+.+. .++.++.|.+.+|.--      ...+   ++ -.++|+.|++++|. |++..-..+
T Consensus       102 ~IeaVDA--sds~I~~eGle~L~-~l~~i~~l~l~~ck~~------dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L  172 (221)
T KOG3864|consen  102 KIEAVDA--SDSSIMYEGLEHLR-DLRSIKSLSLANCKYF------DDWCLERLGGLAPSLQDLDLSGCPRITDGGLACL  172 (221)
T ss_pred             eEEEEec--CCchHHHHHHHHHh-ccchhhhheeccccch------hhHHHHHhcccccchheeeccCCCeechhHHHHH
Confidence            5677777  88888888888888 8888888888887542      2212   22 24678888888775 665555566


Q ss_pred             cCCCCCCEEECCCC
Q 003888           95 ANMTSLRILDVSSN  108 (788)
Q Consensus        95 ~~l~~L~~L~Ls~n  108 (788)
                      ..+++|+.|.+.+-
T Consensus       173 ~~lknLr~L~l~~l  186 (221)
T KOG3864|consen  173 LKLKNLRRLHLYDL  186 (221)
T ss_pred             HHhhhhHHHHhcCc
Confidence            66777777766654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.25  E-value=0.15  Score=30.22  Aligned_cols=19  Identities=37%  Similarity=0.667  Sum_probs=8.6

Q ss_pred             ccCCeEeCCCCcCCccCCc
Q 003888          615 TRIQTLNLSHNNLTGLIPS  633 (788)
Q Consensus       615 ~~L~~L~Ls~N~l~~~~~~  633 (788)
                      ++|+.|+|++|+|+.+.+.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            3444444444444444333

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.25  E-value=0.15  Score=30.22  Aligned_cols=19  Identities=37%  Similarity=0.667  Sum_probs=8.6

Q ss_pred             ccCCeEeCCCCcCCccCCc
Q 003888          615 TRIQTLNLSHNNLTGLIPS  633 (788)
Q Consensus       615 ~~L~~L~Ls~N~l~~~~~~  633 (788)
                      ++|+.|+|++|+|+.+.+.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            3444444444444444333

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.04  E-value=0.0067  Score=56.81  Aligned_cols=84  Identities=14%  Similarity=0.116  Sum_probs=42.7

Q ss_pred             cCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCC
Q 003888           44 SMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLT  123 (788)
Q Consensus        44 ~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~  123 (788)
                      ..+..++||++.|++.    .+-. .|..++.|..|+++.|.+. .+|..++.+..++++++..|..+ ..|. .++..+
T Consensus        40 ~~kr~tvld~~s~r~v----n~~~-n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~-s~~k~~  111 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLV----NLGK-NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK-SQKKEP  111 (326)
T ss_pred             ccceeeeehhhhhHHH----hhcc-chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc-cccccC
Confidence            3445555555555442    2221 2344445555555555554 44555555555555555555554 4555 555555


Q ss_pred             CCCEEECcCccc
Q 003888          124 SIEELMLSNNHF  135 (788)
Q Consensus       124 ~L~~L~Ls~n~l  135 (788)
                      +++++++..|.+
T Consensus       112 ~~k~~e~k~~~~  123 (326)
T KOG0473|consen  112 HPKKNEQKKTEF  123 (326)
T ss_pred             CcchhhhccCcc
Confidence            555555555543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.48  E-value=0.0071  Score=56.66  Aligned_cols=93  Identities=11%  Similarity=0.066  Sum_probs=62.1

Q ss_pred             eecCCCCCCCCCccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCc
Q 003888            9 LVRGQGFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRG   88 (788)
Q Consensus         9 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~   88 (788)
                      .+|..+++.+...++||+  +.++.... -..+. .+..+..||++.|.+    ..+|. ++..+..++.+++..|..+ 
T Consensus        32 ~~~v~ei~~~kr~tvld~--~s~r~vn~-~~n~s-~~t~~~rl~~sknq~----~~~~~-d~~q~~e~~~~~~~~n~~~-  101 (326)
T KOG0473|consen   32 EIPVREIASFKRVTVLDL--SSNRLVNL-GKNFS-ILTRLVRLDLSKNQI----KFLPK-DAKQQRETVNAASHKNNHS-  101 (326)
T ss_pred             ccchhhhhccceeeeehh--hhhHHHhh-ccchH-HHHHHHHHhccHhhH----hhChh-hHHHHHHHHHHHhhccchh-
Confidence            466667777777777777  66665422 12233 445677777777776    44554 6677777777777777666 


Q ss_pred             CCChhhcCCCCCCEEECCCCcCc
Q 003888           89 SLPWCLANMTSLRILDVSSNQLT  111 (788)
Q Consensus        89 ~~~~~l~~l~~L~~L~Ls~n~~~  111 (788)
                      ..|.+++..++++++++-++.+.
T Consensus       102 ~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  102 QQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             hCCccccccCCcchhhhccCcch
Confidence            66777777777777777777665

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=88.56  E-value=0.0063  Score=66.16  Aligned_cols=141  Identities=31%  Similarity=0.358  Sum_probs=91.8

Q ss_pred             CCccEEEcccCCcccccch----hHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCC-CCCCEEEcCCCCCCcC----
Q 003888           19 KSLDHLDMVFARTALNTSF----LQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSL-MHLQELYIDNNDLRGS----   89 (788)
Q Consensus        19 ~~L~~L~L~~~~~~~~~~~----~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~----   89 (788)
                      ..+.+|.|  .+|.+....    ...+. ..++|..|++++|.++..+.......+... ..+++|++..|.+++.    
T Consensus        87 ~~l~~L~L--~~~~l~~~~~~~l~~~l~-t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~  163 (478)
T KOG4308|consen   87 ASLLHLSL--ANNRLGDRGAEELAQALK-TLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAP  163 (478)
T ss_pred             hhHHHhhh--hhCccccchHHHHHHHhc-ccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHH
Confidence            34788888  888876443    34455 678888999999988633333333334443 5678888888888755    


Q ss_pred             CChhhcCCCCCCEEECCCCcCc--C--cCChhhhc----CCCCCCEEECcCccccccCC---ccccccCCC-CcEEEccC
Q 003888           90 LPWCLANMTSLRILDVSSNQLT--G--SISSSPLV----HLTSIEELMLSNNHFQIPIS---LEPLFNHSR-LKIFDAAN  157 (788)
Q Consensus        90 ~~~~l~~l~~L~~L~Ls~n~~~--~--~i~~~~l~----~l~~L~~L~Ls~n~l~~~~~---~~~l~~l~~-L~~L~l~~  157 (788)
                      +.+.+.....++.+|++.|.+.  |  .++. .+.    ...++++|++++|.++....   ...+...++ +.++++..
T Consensus       164 l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~-~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~  242 (478)
T KOG4308|consen  164 LAAVLEKNEHLTELDLSLNGLIELGLLVLSQ-ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS  242 (478)
T ss_pred             HHHHHhcccchhHHHHHhcccchhhhHHHhh-hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh
Confidence            4556677888999999998874  1  1111 233    46788999999987652110   123444455 67788888


Q ss_pred             cccccc
Q 003888          158 NEIKAE  163 (788)
Q Consensus       158 n~~~~~  163 (788)
                      |.+.+.
T Consensus       243 n~l~d~  248 (478)
T KOG4308|consen  243 NKLGDV  248 (478)
T ss_pred             cCcchH
Confidence            887654

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=87.25  E-value=3  Score=44.00  Aligned_cols=63  Identities=17%  Similarity=0.082  Sum_probs=33.5

Q ss_pred             CCCCEEECCCCcCcCcCChhhhcC---CCCCCEEECcCccccccCC--ccccccCCCCcEEEccCcccc
Q 003888           98 TSLRILDVSSNQLTGSISSSPLVH---LTSIEELMLSNNHFQIPIS--LEPLFNHSRLKIFDAANNEIK  161 (788)
Q Consensus        98 ~~L~~L~Ls~n~~~~~i~~~~l~~---l~~L~~L~Ls~n~l~~~~~--~~~l~~l~~L~~L~l~~n~~~  161 (788)
                      ..+.+++|+.|.....+|. .+..   -.-+++++.+...++....  .-..++-+++...+++.|...
T Consensus       214 ~~lteldls~n~~Kddip~-~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s  281 (553)
T KOG4242|consen  214 LWLTELDLSTNGGKDDIPR-TLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTS  281 (553)
T ss_pred             ccccccccccCCCCccchh-HHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCC
Confidence            3567777777777666665 3322   2356666666665542111  112233456666666655543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.25  E-value=0.059  Score=49.80  Aligned_cols=84  Identities=15%  Similarity=0.164  Sum_probs=50.4

Q ss_pred             CCCEEEcCCCcccccCccCcCCCCCccEEEcccCcCcc-cCChhhhhcCCCCcEEEcccCc-CCCCCcccccCCCCCCEE
Q 003888          226 KLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQG-HIPVEIGDILPSLISFNISMNA-LDSSIPSSFGNMNFLQIL  303 (788)
Q Consensus       226 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~-~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L  303 (788)
                      .++.++-+++.+.......+..++.++.|.+.++.--+ ..-..+....++|+.|++++|. |++..-..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            35666666666665555566666777777777664221 1111222345788888888774 555555566677777777


Q ss_pred             EcccCc
Q 003888          304 DLSNNQ  309 (788)
Q Consensus       304 ~l~~n~  309 (788)
                      .+.+-.
T Consensus       182 ~l~~l~  187 (221)
T KOG3864|consen  182 HLYDLP  187 (221)
T ss_pred             HhcCch
Confidence            765543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	788
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-50
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-28
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-50
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-28
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-13
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		8e-06
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		3e-06
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		7e-05
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		6e-06
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		3e-04
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		1e-04
3tsr_E	457	X-Ray Structure Of Mouse Ribonuclease Inhibitor Com		1e-04
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		2e-04
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		3e-04
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		4e-04
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		5e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		6e-04
1g9u_A	454	Crystal Structure Of Yopm-leucine Rich Effector Pro		7e-04
2z7x_B	520	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		9e-04
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		9e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  197 bits (501), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 197/695 (28%), Positives = 308/695 (44%), Gaps = 101/695 (14%)
Query: 71  CSLMHLQELYIDNNDLRGSLPW--CLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 128
           CS   L  L +  N L G +     L + + L+ L+VSSN L      S  + L S+E L
Sbjct: 95  CS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 153
Query: 129 MLSNNHFQIPISLEPLFNH--SRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGY 186
            LS N       +  + +     LK    + N+I  ++  S  +      + + + S+G 
Sbjct: 154 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI 213
Query: 187 GDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPF-RLPI 245
                   FL     L+ + +S   + G+F +  +   T+L+ L + ++   GP   LP+
Sbjct: 214 -------PFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPPLPL 265
Query: 246 HSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFG---------- 295
            S   L++L ++ N F G IP  +     +L   ++S N    ++P  FG          
Sbjct: 266 KS---LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 322
Query: 296 ---------------NMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHM- 339
                           M  L++LDLS N+ +GE+PE L     +L  L LS+NN  G + 
Sbjct: 323 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 382
Query: 340 --FSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGL 397
               +N   T L+ L L+ N   G+IP +LS CS L  L+L+ N LSG IP  LG+L+ L
Sbjct: 383 PNLCQNPKNT-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 441
Query: 398 KHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQ 457
           + + +  N LEG IP     + +L+ L +  N+++G +PS                    
Sbjct: 442 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS----------------- 484
Query: 458 LKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXX 517
                  +C++L  + LS NRL G IP W+  L  L+ L L +N+  G +P         
Sbjct: 485 -------NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 537
Query: 518 XXXXXXXXXXHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHEN---F 574
                     +G IP      +   ++N  +        +  D M    +K+ H      
Sbjct: 538 IWLDLNTNLFNGTIPAAMFKQSGKIAAN--FIAGKRYVYIKNDGM----KKECHGAGNLL 591
Query: 575 EF-----------TTKN----IAYIYQGKVLSLLSG------LDLSCNKLIGHIPPQIGN 613
           EF           +T+N     + +Y G              LD+S N L G+IP +IG+
Sbjct: 592 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 651
Query: 614 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYN 673
           +  +  LNL HN+++G IP    +L+ +  LDLS NKL+G+IP  +  L  L    ++ N
Sbjct: 652 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 711
Query: 674 NLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPIC 708
           NLSG IPE   QF TF  + +  N  LCG PLP C
Sbjct: 712 NLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRC 745

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 149/475 (31%), Positives = 207/475 (43%), Gaps = 52/475 (10%)
Query: 251 LRFLDVSNNNFQGHIPVEIGDILPS---LISFNISMNALDSSIPSSFG-NMNFLQILDLS 306
           L  LD+S N+  G  PV     L S   L   N+S N LD     S G  +N L++LDLS
Sbjct: 99  LTSLDLSRNSLSG--PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 156
Query: 307 NNQLTGE--IPEHLAVSCVNLEFLALSNNNLKGHM-FSRNFNLTNLRSLQLEGNHLEGEI 363
            N ++G   +   L+  C  L+ LA+S N + G +  SR     NL  L +  N+    I
Sbjct: 157 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSR---CVNLEFLDVSSNNFSTGI 213
Query: 364 PQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQI 423
           P  L  CS+L+ L ++ N LSG   R +   T LK + +  N   GPIP     L SLQ 
Sbjct: 214 P-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQY 270
Query: 424 LDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSI 483
           L +++N  +G +P               + L G         C +L  LDLS N   G++
Sbjct: 271 LSLAENKFTGEIP---------------DFLSGA--------CDTLTGLDLSGNHFYGAV 307
Query: 484 PNWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXX-HGPIPPCFDNT---- 538
           P +    S L  L L  NN  GE+P+                    G +P    N     
Sbjct: 308 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 367
Query: 539 -TLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLD 597
            TL  SSNN     P   +L  +      E  +  N  FT K    +      S L  L 
Sbjct: 368 LTLDLSSNNFSG--PILPNLCQNPKNTLQELYLQNN-GFTGKIPPTLSN---CSELVSLH 421
Query: 598 LSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH 657
           LS N L G IP  +G+L++++ L L  N L G IP     +K +E+L L +N L G+IP 
Sbjct: 422 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 481
Query: 658 QLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP--LPICRS 710
            L     L   S++ N L+GEIP+W  +           N+F   +P  L  CRS
Sbjct: 482 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 536

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  197 bits (501), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 197/695 (28%), Positives = 308/695 (44%), Gaps = 101/695 (14%)
Query: 71  CSLMHLQELYIDNNDLRGSLPW--CLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 128
           CS   L  L +  N L G +     L + + L+ L+VSSN L      S  + L S+E L
Sbjct: 98  CS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156
Query: 129 MLSNNHFQIPISLEPLFNH--SRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGY 186
            LS N       +  + +     LK    + N+I  ++  S  +      + + + S+G 
Sbjct: 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI 216
Query: 187 GDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPF-RLPI 245
                   FL     L+ + +S   + G+F +  +   T+L+ L + ++   GP   LP+
Sbjct: 217 -------PFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPPLPL 268
Query: 246 HSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFG---------- 295
            S   L++L ++ N F G IP  +     +L   ++S N    ++P  FG          
Sbjct: 269 KS---LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325
Query: 296 ---------------NMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHM- 339
                           M  L++LDLS N+ +GE+PE L     +L  L LS+NN  G + 
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385
Query: 340 --FSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGL 397
               +N   T L+ L L+ N   G+IP +LS CS L  L+L+ N LSG IP  LG+L+ L
Sbjct: 386 PNLCQNPKNT-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444
Query: 398 KHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQ 457
           + + +  N LEG IP     + +L+ L +  N+++G +PS                    
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS----------------- 487
Query: 458 LKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXX 517
                  +C++L  + LS NRL G IP W+  L  L+ L L +N+  G +P         
Sbjct: 488 -------NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540
Query: 518 XXXXXXXXXXHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHEN---F 574
                     +G IP      +   ++N  +        +  D M    +K+ H      
Sbjct: 541 IWLDLNTNLFNGTIPAAMFKQSGKIAAN--FIAGKRYVYIKNDGM----KKECHGAGNLL 594
Query: 575 EF-----------TTKN----IAYIYQGKVLSLLSG------LDLSCNKLIGHIPPQIGN 613
           EF           +T+N     + +Y G              LD+S N L G+IP +IG+
Sbjct: 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654
Query: 614 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYN 673
           +  +  LNL HN+++G IP    +L+ +  LDLS NKL+G+IP  +  L  L    ++ N
Sbjct: 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714
Query: 674 NLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPIC 708
           NLSG IPE   QF TF  + +  N  LCG PLP C
Sbjct: 715 NLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRC 748

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  124 bits (310), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 149/475 (31%), Positives = 207/475 (43%), Gaps = 52/475 (10%)
Query: 251 LRFLDVSNNNFQGHIPVEIGDILPS---LISFNISMNALDSSIPSSFG-NMNFLQILDLS 306
           L  LD+S N+  G  PV     L S   L   N+S N LD     S G  +N L++LDLS
Sbjct: 102 LTSLDLSRNSLSG--PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159
Query: 307 NNQLTGE--IPEHLAVSCVNLEFLALSNNNLKGHM-FSRNFNLTNLRSLQLEGNHLEGEI 363
            N ++G   +   L+  C  L+ LA+S N + G +  SR     NL  L +  N+    I
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSR---CVNLEFLDVSSNNFSTGI 216
Query: 364 PQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQI 423
           P  L  CS+L+ L ++ N LSG   R +   T LK + +  N   GPIP     L SLQ 
Sbjct: 217 P-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQY 273
Query: 424 LDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSI 483
           L +++N  +G +P               + L G         C +L  LDLS N   G++
Sbjct: 274 LSLAENKFTGEIP---------------DFLSGA--------CDTLTGLDLSGNHFYGAV 310
Query: 484 PNWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXX-HGPIPPCFDNT---- 538
           P +    S L  L L  NN  GE+P+                    G +P    N     
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370
Query: 539 -TLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLD 597
            TL  SSNN     P   +L  +      E  +  N  FT K    +      S L  L 
Sbjct: 371 LTLDLSSNNFSG--PILPNLCQNPKNTLQELYLQNN-GFTGKIPPTLSN---CSELVSLH 424
Query: 598 LSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH 657
           LS N L G IP  +G+L++++ L L  N L G IP     +K +E+L L +N L G+IP 
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484
Query: 658 QLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP--LPICRS 710
            L     L   S++ N L+GEIP+W  +           N+F   +P  L  CRS
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 100/255 (39%), Gaps = 52/255 (20%)
Query: 477 NRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXXXXXXXXXXXXHGPIPPCFD 536
           N L G IP  +  L+QL +L + H N+ G +P                    G +PP   
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP--- 143
Query: 537 NTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGL 596
                     S S  P    +  D   I     I +++            G    L + +
Sbjct: 144 ----------SISSLPNLVGITFDGNRI--SGAIPDSY------------GSFSKLFTSM 179
Query: 597 DLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSN------------------- 637
            +S N+L G IPP   NL  +  ++LS N L G     F +                   
Sbjct: 180 TISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238
Query: 638 ----LKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESS 693
                K++  LDL  N++ G +P  L +LK L   +V++NNL GEIP+       F+ S+
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSA 297
Query: 694 YEGNTFLCGLPLPIC 708
           Y  N  LCG PLP C
Sbjct: 298 YANNKCLCGSPLPAC 312

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 607 IPPQIGNLTRIQTLNLSH-NNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTL 665
           IP  + NL  +  L +   NNL G IP   + L  +  L +++  ++G IP  L ++KTL
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 666 AVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP 704
                +YN LSG +P   +        +++GN     +P
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 139/307 (45%), Gaps = 42/307 (13%)
Query: 58  LGTNSSRILDQG-LCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISS 116
           LG N  + L+Q    S  HL+EL ++ N +    P    N+ +LR L + SN+L   I  
Sbjct: 39  LGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPL 97
Query: 117 SPLVHLTSIEELMLSNNHFQIPISLEPLFNH-SRLKIFDAANNEIKAEITESHSLTAPNF 175
                L+++ +L +S N  +I I L+ +F     LK  +  +N++   +  SH   +   
Sbjct: 98  GVFTGLSNLTKLDISEN--KIVILLDYMFQDLYNLKSLEVGDNDL---VYISHRAFSGLN 152
Query: 176 QLQALSLSSGYGDGVTFP-KFLYHQHDLEDVRLSHVNMDG---------------EFPNW 219
            L+ L+L     +  + P + L H H L  +RL H+N++                E  +W
Sbjct: 153 SLEQLTLEK--CNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210
Query: 220 -LLENNT-------KLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNN---NFQGHIPVE 268
             L+  T        L  L + + +LT    L +    +LRFL++S N     +G +  E
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270
Query: 269 IGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFL 328
               L  L    +    L    P +F  +N+L++L++S NQLT  + E +  S  NLE L
Sbjct: 271 ----LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETL 325
Query: 329 ALSNNNL 335
            L +N L
Sbjct: 326 ILDSNPL 332

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 105/233 (45%), Gaps = 16/233 (6%)
Query: 252 RFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLT 311
           R LD+  N  +     E     P L    ++ N + +  P +F N+  L+ L L +N+L 
Sbjct: 35  RLLDLGKNRIKTLNQDEFAS-FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
Query: 312 GEIPEHLAVSCVNLEFLALSNNN---LKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLS 368
             IP  +     NL  L +S N    L  +MF    +L NL+SL++  N L     ++ S
Sbjct: 94  -LIPLGVFTGLSNLTKLDISENKIVILLDYMFQ---DLYNLKSLEVGDNDLVYISHRAFS 149
Query: 369 KCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISD 428
             +SLE L L   +L+      L +L GL  + +   ++       F +LY L++L+IS 
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209
Query: 429 -NNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVT---LDLSYN 477
              +    P+C + L++  + ++    H  L    +     LV    L+LSYN
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSIT----HCNLTAVPYLAVRHLVYLRFLNLSYN 258

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 110/250 (44%), Gaps = 17/250 (6%)
Query: 275 SLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLA--VSCVNLEFLALSN 332
           SL   ++S N L    P  F  +  L  L L+N QL   + E L   +S  +++ L+L+N
Sbjct: 172 SLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLAN 231
Query: 333 NNLKGHMFS--RNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW 390
           N L     S       TNL  L L  N+L      S S   SL  L L  N++    PR 
Sbjct: 232 NQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRS 291
Query: 391 LGNLTGLKHIIMPENHLEGPIPVG---------FCQLYSLQILDISDNNISGSLPSCFHP 441
              L+ L+++ +     +  + +          F  L  L+ L++ DNNI  +  + F  
Sbjct: 292 FYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTG 351
Query: 442 L-SIEQVHLSKNMLHGQ-LKRGTFFHC--SSLVTLDLSYNRLNGSIPNWVDGLSQLSHLI 497
           L S++ + LSK     Q L   TF     S L+TL+L+ N ++         L QL  L 
Sbjct: 352 LVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILD 411
Query: 498 LGHNNLEGEV 507
           LG N +E ++
Sbjct: 412 LGLNEIEQKL 421

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 114/286 (39%), Gaps = 33/286 (11%)
Query: 402 MPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQV-HLSKNMLHGQLKR 460
           +  N L    P  F +   L ILD   N+IS   P     L + +V +L  N L  Q+  
Sbjct: 32  LTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNEL-SQISD 90
Query: 461 GTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVXXXXXXXXXXX 520
            TF  C++L  LDL  N ++    N       L  L L HN L                 
Sbjct: 91  QTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS--------------- 135
Query: 521 XXXXXXXHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKN 580
                   G      +   L  + N   +L+  E   + +S +   +   +   EF+   
Sbjct: 136 -----TKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGC 190
Query: 581 IAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIG---NLTRIQTLNLSHNNLTGLIPSTFSN 637
              I  GK+ +LL    L+  +L  H+  ++    + T IQ L+L++N L     STFS 
Sbjct: 191 FQTI--GKLFALL----LNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSG 244
Query: 638 LK--HIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPE 681
           LK  ++  LDLSYN L+         L +L   S+ YNN+    P 
Sbjct: 245 LKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPR 290

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 75/161 (46%), Gaps = 30/161 (18%)
Query: 346 LTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPEN 405
           L N+R L L GN L      +L + ++L  L L  N L          LT LK +++ EN
Sbjct: 62  LPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 406 HLEGPIPVG-FCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFF 464
            L+  +P G F +L +L  L+++ N +  SLP                       +G F 
Sbjct: 120 QLQS-LPDGVFDKLTNLTYLNLAHNQLQ-SLP-----------------------KGVFD 154
Query: 465 HCSSLVTLDLSYNRLNGSIPNWV-DGLSQLSHLILGHNNLE 504
             ++L  LDLSYN+L  S+P  V D L+QL  L L  N L+
Sbjct: 155 KLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK 194

>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed With Mouse Ribonuclease 1 Length = 457

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 128/291 (43%), Gaps = 31/291 (10%)
Query: 1   MFDCKVNGLVRGQGFPHFKSLDHLDMVFAR-TALNTSFLQIIRESMPSLKYLSMSDSTLG 59
           M D  +  L  G   P  + L+ L + +   TA +   L  +       K L +S++ L 
Sbjct: 121 MGDAGLKLLCEGLQDPQCR-LEKLQLEYCNLTATSCEPLASVLRVKADFKELVLSNNDLH 179
Query: 60  TNSSRILDQGLC-SLMHLQELYIDNNDLRGS----LPWCLANMTSLRILDVSSNQL--TG 112
               RIL QGL  S   L+ L ++N  +  +    L   +A+  SL+ LD+SSN+L   G
Sbjct: 180 EPGVRILCQGLKDSACQLESLKLENCGITAANCKDLCDVVASKASLQELDLSSNKLGNAG 239
Query: 113 SISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSR-------LKIFDAANNEIKAEIT 165
             +  P + L S +   L    ++  I+ E   +  R       LK    A+NE+K E  
Sbjct: 240 IAALCPGLLLPSCKLRTLW--LWECDITAEGCKDLCRVLRAKQSLKELSLASNELKDEGA 297
Query: 166 E--SHSLTAPNFQLQALSLSSGYGDGVTFPKF---LYHQHDLEDVRLSH--VNMDG--EF 216
                SL  P  QL++L + +      + P F   L     L ++++S   +  +G  E 
Sbjct: 298 RLLCESLLEPGCQLESLWIKTCSLTAASCPYFCSVLTKSRSLLELQMSSNPLGDEGVQEL 357
Query: 217 PNWLLENNTKLRQLYL----VNDSLTGPFRLPIHSHRWLRFLDVSNNNFQG 263
              L + +T LR+L+L    V +S        + ++R LR LD+SNN   G
Sbjct: 358 CKALSQPDTVLRELWLGDCDVTNSGCSSLANVLLANRSLRELDLSNNCMGG 408

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 5/164 (3%)
Query: 347 TNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENH 406
            + + L L+ N L     ++  + + L  LYLN+N L          L  L+ + + +N 
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 407 LEGPIPVG-FCQLYSLQILDISDNNISGSLPSCFHPLS-IEQVHLSKNMLHGQLKRGTFF 464
           L+  +P+G F QL +L  L +  N +    P  F  L+ +  + L  N L   L +G F 
Sbjct: 97  LQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFD 154
Query: 465 HCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVP 508
             +SL  L L  N+L        D L++L  L L +N L+  VP
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVP 197

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 90/192 (46%), Gaps = 17/192 (8%)
Query: 324 NLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSL 383
           N+ +LAL  N L  H  S    LTNL  L L GN L+        K ++L+ L L  N L
Sbjct: 64  NVRYLALGGNKL--HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 384 SGKIPRWLGNLTGLKHIIMPENHLEGPIPVG-FCQLYSLQILDISDNNISGSLPS-CFHP 441
                     LT L ++ +  N L+  +P G F +L +L  LD+ DNN   SLP   F  
Sbjct: 122 QSLPDGVFDKLTNLTYLYLYHNQLQS-LPKGVFDKLTNLTRLDL-DNNQLQSLPEGVFDK 179
Query: 442 LS-IEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGS------IPNWVDGLSQLS 494
           L+ ++Q+ L+ N L   +  G F   +SL  + L  N  + +      +  W+   SQ  
Sbjct: 180 LTQLKQLSLNDNQLKS-VPDGVFDRLTSLTHIWLLNNPWDCACSDILYLSRWI---SQHP 235
Query: 495 HLILGHNNLEGE 506
            L+ G+ NL+ +
Sbjct: 236 GLVFGYLNLDPD 247

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 109/436 (25%), Positives = 175/436 (40%), Gaps = 68/436 (15%)
Query: 96  NMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPIS--LEPLFNHSRLKIF 153
           N+ +L  LD+S NQ+           L S++ +  S+N   +     LEPL     L  F
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL-QGKTLSFF 179
Query: 154 DAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMD 213
             A N + + ++         F+   L +    G+G T                  V++ 
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT------------------VDIT 221
Query: 214 GEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDIL 273
           G F N +  + ++   L L +  +   F    H+ +     D   N F G     +  + 
Sbjct: 222 GNFSNAI--SKSQAFSLILAHHIMGAGF--GFHNIK-----DPDQNTFAGLARSSVRHLD 272
Query: 274 PSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNN 333
            S   F  S+N+        F  +  L++L+L+ N++  +I +       NL+ L LS  
Sbjct: 273 LSH-GFVFSLNS------RVFETLKDLKVLNLAYNKI-NKIADEAFYGLDNLQVLNLS-Y 323
Query: 334 NLKGHMFSRNF-NLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSG-----KI 387
           NL G ++S NF  L  +  + L+ NH+     Q+      L+ L L +N+L+       I
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSI 383
Query: 388 PRWLGNLTGLKHIIMP------------ENHLEG-PIPVGFCQLYSLQILDISDNNI--- 431
           P     L+G K + +P            EN LE   I     ++  LQIL ++ N     
Sbjct: 384 PDIF--LSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441
Query: 432 SGSLPSCFHPLSIEQVHLSKNMLH----GQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWV 487
           SG      +P S+EQ+ L +NML      +L    F   S L  L L++N LN   P   
Sbjct: 442 SGDQTPSENP-SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF 500
Query: 488 DGLSQLSHLILGHNNL 503
             L+ L  L L  N L
Sbjct: 501 SHLTALRGLSLNSNRL 516

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 152/376 (40%), Gaps = 61/376 (16%)
Query: 273 LPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSN 332
           L +L   N S N L    P    N+  L  + ++NNQ+    P     +  NL  L L N
Sbjct: 62  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFN 116
Query: 333 NNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 392
           N +      +N  LTNL  L+L  N +      +LS  +SL+ L  ++N ++   P  L 
Sbjct: 117 NQITDIDPLKN--LTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP--LA 170
Query: 393 NLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKN 452
           NLT L+ + +  N +   I V   +L +L+ L  ++N IS        PL I   +L + 
Sbjct: 171 NLTTLERLDISSNKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGI-LTNLDEL 222
Query: 453 MLHG-QLKR-GTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVX 510
            L+G QLK  GT    ++L  LDL+ N+++   P  + GL++L+ L LG N +    P+ 
Sbjct: 223 SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA 280
Query: 511 XXXXXXXXXXXXXXXXXHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQI 570
                              PI    + T L    NN   + P  +   +  +        
Sbjct: 281 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL-------- 332
Query: 571 HENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGL 630
                       + Y  KV  + S                + NLT I  L+  HN ++ L
Sbjct: 333 ------------FFYNNKVSDVSS----------------LANLTNINWLSAGHNQISDL 364
Query: 631 IPSTFSNLKHIESLDL 646
            P   +NL  I  L L
Sbjct: 365 TP--LANLTRITQLGL 378

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 152/376 (40%), Gaps = 61/376 (16%)
Query: 273 LPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSN 332
           L +L   N S N L    P    N+  L  + ++NNQ+    P     +  NL  L L N
Sbjct: 62  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFN 116
Query: 333 NNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 392
           N +      +N  LTNL  L+L  N +      +LS  +SL+ L  ++N ++   P  L 
Sbjct: 117 NQITDIDPLKN--LTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKP--LA 170
Query: 393 NLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKN 452
           NLT L+ + +  N +   I V   +L +L+ L  ++N IS        PL I   +L + 
Sbjct: 171 NLTTLERLDISSNKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGI-LTNLDEL 222
Query: 453 MLHG-QLKR-GTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVX 510
            L+G QLK  GT    ++L  LDL+ N+++   P  + GL++L+ L LG N +    P+ 
Sbjct: 223 SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA 280
Query: 511 XXXXXXXXXXXXXXXXXHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQI 570
                              PI    + T L    NN   + P  +   +  +        
Sbjct: 281 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL-------- 332
Query: 571 HENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGL 630
                       + Y  KV  + S                + NLT I  L+  HN ++ L
Sbjct: 333 ------------FFYNNKVSDVSS----------------LANLTNINWLSAGHNQISDL 364
Query: 631 IPSTFSNLKHIESLDL 646
            P   +NL  I  L L
Sbjct: 365 TP--LANLTRITQLGL 378

>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein From Yersinia Pestis Length = 454

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 127/298 (42%), Gaps = 74/298 (24%)
Query: 251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQL 310
           L+ L V NNN +      + D+ P L    +S N L+  +P    N +FL+I+D+ NN L
Sbjct: 113 LKSLLVDNNNLKA-----LSDLPPLLEYLGVSNNQLEK-LPE-LQNSSFLKIIDVDNNSL 165
Query: 311 TGEIPEHLAVSCVNLEFLALSNNNLK-----------GHMFSRNFNLTNLRSLQLE---- 355
                + L     +LEF+A  NN L+             +++ N +L  L  L L     
Sbjct: 166 -----KKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESI 220
Query: 356 --GNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPV 413
             GN++  E+P+ L     L  +Y +NN L   +P    +L  L    + +N+L      
Sbjct: 221 VAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPDLPPSLEALN---VRDNYL-----T 270
Query: 414 GFCQL-YSLQILDISDNNISG--SLPS---------------CFHPLSIEQVHLSKN--- 452
              +L  SL  LD+S+N  SG   LP                C  P S+E++++S N   
Sbjct: 271 DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI 330
Query: 453 ---MLHGQLKR--GTFFHCSS-------LVTLDLSYNRLN--GSIPNWVDGLSQLSHL 496
               L  +L+R   +F H +        L  L + YN L     IP  V+ L   SHL
Sbjct: 331 ELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHL 388

>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 520

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 69/147 (46%), Gaps = 13/147 (8%)
Query: 368 SKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLE--GPIPVGFCQLYSLQILD 425
           SK S    L  +NN L+  +    G+LT L+ +I+  N L+    I     Q+ SLQ LD
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380
Query: 426 ISDNNIS--GSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHC--SSLVTLDLSYNRLNG 481
           IS N++S       C    S+  +++S N+L       T F C    +  LDL  N++  
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL-----TDTIFRCLPPRIKVLDLHSNKIK- 434
Query: 482 SIPNWVDGLSQLSHLILGHNNLEGEVP 508
           SIP  V  L  L  L +  N L+  VP
Sbjct: 435 SIPKQVVKLEALQELNVASNQLKS-VP 460

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 158/379 (41%), Gaps = 67/379 (17%)
Query: 273 LPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSN 332
           L +L   N S N L    P    N+  L  + ++NNQ+    P     +  NL  L L N
Sbjct: 62  LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFN 116
Query: 333 NNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 392
           N +      +N  LTNL  L+L  N +      +LS  +SL+ L  ++N ++   P  L 
Sbjct: 117 NQITDIDPLKN--LTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP--LA 170
Query: 393 NLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKN 452
           NLT L+ + +  N +   I V   +L +L+ L  ++N IS        PL I   +L + 
Sbjct: 171 NLTTLERLDISSNKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGI-LTNLDEL 222
Query: 453 MLHG-QLKR-GTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVX 510
            L+G QLK  GT    ++L  LDL+ N+++   P  + GL++L+ L LG N +    P+ 
Sbjct: 223 SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA 280
Query: 511 XXXXXXXXXXXXXXXXXHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQI 570
                                     N  L+E  N    + P                  
Sbjct: 281 GLT--------------------ALTNLELNE--NQLEDISPISN--------------- 303
Query: 571 HENFEFTT---KNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL 627
            +N  + T    NI+ I     L+ L  L  S NK +  +   + NLT I  L+  HN +
Sbjct: 304 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNK-VSDVS-SLANLTNINWLSAGHNQI 361
Query: 628 TGLIPSTFSNLKHIESLDL 646
           + L P   +NL  I  L L
Sbjct: 362 SDLTP--LANLTRITQLGL 378

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	788
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-153
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-120
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-117
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-99
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-85
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-79
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-55
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-50
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-78
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-64
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-54
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-52
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-49
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-68
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-68
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-52
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-67
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-66
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-57
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-48
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-32
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-66
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-52
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-50
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-50
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-47
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-44
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-62
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-59
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-40
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-57
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-57
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-56
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-39
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-51
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-50
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-44
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-44
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-44
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-42
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-31
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-40
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-40
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-39
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-38
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-38
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-30
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-30
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-37
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-33
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-37
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-35
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-33
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-28
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-35
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-33
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-35
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-33
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-34
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-32
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-32
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-33
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-27
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-32
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-31
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-30
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-30
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-27
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-25
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-29
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-28
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-27
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-27
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-27
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-25
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-24
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-20
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-20
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	2e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	4e-05
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	2e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  463 bits (1195), Expect = e-153
 Identities = 182/669 (27%), Positives = 280/669 (41%), Gaps = 100/669 (14%)

Query: 44  SMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRIL 103
               LK+L++S + +   S  +    +   ++L+ L + +N+    +P+ L + ++L+ L
Sbjct: 176 GCGELKHLAISGNKI---SGDV---DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHL 228

Query: 104 DVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAE 163
           D+S N+L+G  S + +   T ++ L +S+N F  PI   P      L+    A N+   E
Sbjct: 229 DISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPI---PPLPLKSLQYLSLAENKFTGE 284

Query: 164 ITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLEN 223
           I +  S       L  L LS  +  G   P F      LE + LS  N  GE P   L  
Sbjct: 285 IPDFLSGACDT--LTGLDLSGNHFYG-AVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341

Query: 224 NTKLRQLYLVNDSLTGPFRLPIHS-HRWLRFLDVSNNNFQGHIPVEIGDI-LPSLISFNI 281
              L+ L L  +  +G     + +    L  LD+S+NNF G I   +      +L    +
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401

Query: 282 SMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFS 341
             N     IP +  N + L  L LS N L+G IP  L  S   L  L L  N L+G +  
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQ 460

Query: 342 RNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHII 401
               +  L +L L+ N L GEIP  LS C++L  + L+NN L+G+IP+W+G L  L  + 
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520

Query: 402 MPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRG 461
           +  N   G IP       SL  LD++ N  +G++P+     S                  
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS------------------ 562

Query: 462 TFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHN--NLEGEVPVQLCELNQLQL 519
                       ++ N + G    ++             N    +G    QL  L+    
Sbjct: 563 ----------GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612

Query: 520 LDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTK 579
            ++++    G   P FDN                                          
Sbjct: 613 CNITSRVYGGHTSPTFDN------------------------------------------ 630

Query: 580 NIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLK 639
                        +  LD+S N L G+IP +IG++  +  LNL HN+++G IP    +L+
Sbjct: 631 ----------NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680

Query: 640 HIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTF 699
            +  LDLS NKL+G+IP  +  L  L    ++ NNLSG IPE   QF TF  + +  N  
Sbjct: 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPG 739

Query: 700 LCGLPLPIC 708
           LCG PLP C
Sbjct: 740 LCGYPLPRC 748

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  379 bits (976), Expect = e-120
 Identities = 167/662 (25%), Positives = 274/662 (41%), Gaps = 127/662 (19%)

Query: 47  SLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 106
            +  + +S   L    S +    L SL  L+ L++ N+ + GS+        SL  LD+S
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSS-LLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLS 108

Query: 107 SNQLTGSISSSP-LVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEIT 165
            N L+G +++   L   + ++ L +S+N    P  +      + L++ D           
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD----------- 157

Query: 166 ESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENN- 224
                                                    LS  ++ G      + ++ 
Sbjct: 158 -----------------------------------------LSANSISGANVVGWVLSDG 176

Query: 225 -TKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISM 283
             +L+ L +  + ++G   + +     L FLDVS+NNF   IP  +GD   +L   +IS 
Sbjct: 177 CGELKHLAISGNKISGD--VDVSRCVNLEFLDVSSNNFSTGIP-FLGD-CSALQHLDISG 232

Query: 284 NALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHM-FSR 342
           N L      +      L++L++S+NQ  G IP        +L++L+L+ N   G +    
Sbjct: 233 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFL 289

Query: 343 NFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPR-WLGNLTGLKHII 401
           +     L  L L GNH  G +P     CS LE L L++N+ SG++P   L  + GLK + 
Sbjct: 290 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349

Query: 402 MPENHLEGPIPVGFCQL-YSLQILDISDNNISGSLPSCF---HPLSIEQVHLSKNMLHGQ 457
           +  N   G +P     L  SL  LD+S NN SG +          ++++++L  N   G+
Sbjct: 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409

Query: 458 LKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQL 517
           +   T  +CS LV+L LS+N L+G+IP+ +  LS+L  L L  N LEGE+P +L  +  L
Sbjct: 410 IPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468

Query: 518 QLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFT 577
           + L L  N+L G IP    N                                        
Sbjct: 469 ETLILDFNDLTGEIPSGLSN---------------------------------------- 488

Query: 578 TKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSN 637
                        + L+ + LS N+L G IP  IG L  +  L LS+N+ +G IP+   +
Sbjct: 489 ------------CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536

Query: 638 LKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGN 697
            + +  LDL+ N  NG IP  + +        +A N ++G+   +        E    GN
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGN 592

Query: 698 TF 699
             
Sbjct: 593 LL 594

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  371 bits (954), Expect = e-117
 Identities = 154/647 (23%), Positives = 250/647 (38%), Gaps = 104/647 (16%)

Query: 44  SMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPW--CLANMTSLR 101
           S+  L+ L +S+S +  + S     G      L  L +  N L G +     L + + L+
Sbjct: 75  SLTGLESLFLSNSHINGSVS-----GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLK 129

Query: 102 ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHF--QIPISLEPLFNHSRLKIFDAANNE 159
            L+VSSN L      S  + L S+E L LS N       +          LK    + N+
Sbjct: 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK 189

Query: 160 IKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNW 219
           I  ++  S         L+ L +SS        P FL     L+ + +S   + G+F   
Sbjct: 190 ISGDVDVSR-CV----NLEFLDVSSNNFST-GIP-FLGDCSALQHLDISGNKLSGDFSRA 242

Query: 220 LLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISF 279
           +    T+L+ L + ++   GP  +P    + L++L ++ N F G IP  +     +L   
Sbjct: 243 IS-TCTELKLLNISSNQFVGP--IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299

Query: 280 NISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHM 339
           ++S N    ++P  FG+ + L+ L LS+N  +GE+P    +    L+ L LS N   G +
Sbjct: 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 359

Query: 340 FSRNFNLT-NLRSLQLEGNHLEGEIPQSLSKC--SSLEGLYLNNNSLSGKIPRWLGNLTG 396
                NL+ +L +L L  N+  G I  +L +   ++L+ LYL NN  +GKIP  L N + 
Sbjct: 360 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE 419

Query: 397 LKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHG 456
           L  + +  N+L G IP     L  L+ L +  N + G +P                    
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE------------------ 461

Query: 457 QLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQ 516
                   +  +L TL L +N L G IP+ +   + L+ + L +N L GE+P  +  L  
Sbjct: 462 ------LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515

Query: 517 LQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEF 576
           L +L LSNN+  G IP    +                                       
Sbjct: 516 LAILKLSNNSFSGNIPAELGD--------------------------------------- 536

Query: 577 TTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFS 636
                           L  LDL+ N   G IP  +       +  ++ N + G       
Sbjct: 537 -------------CRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAANFIAGKRYVYIK 579

Query: 637 NLKHIESLDLSYN--KLNGKIPHQLVELKTLAVFSVAYNNLSGEIPE 681
           N    +    + N  +  G    QL  L T    ++      G    
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  323 bits (831), Expect = 3e-99
 Identities = 134/473 (28%), Positives = 219/473 (46%), Gaps = 50/473 (10%)

Query: 223 NNTKLRQLYLVNDSLTGPFRL---PIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISF 279
            + K+  + L +  L   F      + S   L  L +SN++  G +         SL S 
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKC-SASLTSL 105

Query: 280 NISMNALDSSIPS--SFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKG 337
           ++S N+L   + +  S G+ + L+ L++S+N L         +   +LE L LS N++ G
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165

Query: 338 HM---FSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNL 394
                +  +     L+ L + GN + G++   +S+C +LE L +++N+ S  IP +LG+ 
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDC 222

Query: 395 TGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNML 454
           + L+H+ +  N L G           L++L+IS N   G +P      S++ + L++N  
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK-SLQYLSLAENKF 281

Query: 455 HGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQ-LCE 513
            G++       C +L  LDLS N   G++P +    S L  L L  NN  GE+P+  L +
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341

Query: 514 LNQLQLLDLSNNNLHGPIPPCFDNTT-----LHESSNNSYSLKPFETSLVMDSMMIPAEK 568
           +  L++LDLS N   G +P    N +     L  SSNN      F       S  I    
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN------F-------SGPILPN- 387

Query: 569 QIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT 628
                                 + L  L L  N   G IPP + N + + +L+LS N L+
Sbjct: 388 ----------------LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431

Query: 629 GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPE 681
           G IPS+  +L  +  L L  N L G+IP +L+ +KTL    + +N+L+GEIP 
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.0 bits (141), Expect = 8e-09
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 613 NLTRIQTLNLSHNNLT---GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFS 669
              ++ +++LS   L      + S+  +L  +ESL LS + +NG +        +L    
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLD 106

Query: 670 VAYNNLSGEIPEW 682
           ++ N+LSG +   
Sbjct: 107 LSRNSLSGPVTTL 119

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  284 bits (730), Expect = 1e-85
 Identities = 130/689 (18%), Positives = 235/689 (34%), Gaps = 89/689 (12%)

Query: 46  PSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDV 105
            ++  L+++ + L     R+          L  L +  N +    P     +  L++L++
Sbjct: 25  TNITVLNLTHNQL----RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNL 80

Query: 106 SSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEIT 165
             N+L+     +     T++ EL L +N  Q   +  P      L   D ++N + +   
Sbjct: 81  QHNELSQLSDKT-FAFCTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHNGLSSTKL 138

Query: 166 ES-HSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENN 224
            +   L      LQ L LS+                     ++  +    E   +    N
Sbjct: 139 GTQVQLE----NLQELLLSN--------------------NKIQALK-SEELDIF---AN 170

Query: 225 TKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDI--LPSLISFNIS 282
           + L++L L ++ +        H+   L  L ++N      +  ++       S+ + ++S
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230

Query: 283 MNALDSSIPSSFGNMNF--LQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMF 340
            + L ++  ++F  + +  L +LDLS N L     +  A     LE+  L  NN++    
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFS 289

Query: 341 SRNFNLTNLRSLQLEGN---------HLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWL 391
                L N+R L L+ +          L      S      LE L + +N + G      
Sbjct: 290 HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF 349

Query: 392 GNLTGLKHIIMPENHLEGPIPVG----FCQLYSLQILDISDNNISGSLPSCFHPL-SIEQ 446
             L  LK++ +  +                   L IL+++ N IS      F  L  +E 
Sbjct: 350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409

Query: 447 VHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEG- 505
           + L  N +  +L    +    ++  + LSYN+      N    +  L  L+L    L+  
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469

Query: 506 -EVPVQLCELNQLQLLDLSNNNLHGPIPPCFDN----TTLHESSNNSYSLKPFETSLVMD 560
              P     L  L +LDLSNNN+        +       L    NN   L          
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529

Query: 561 SMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTL 620
             +                        K LS L  L+L  N           +L  ++ +
Sbjct: 530 YFL------------------------KGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565

Query: 621 NLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL-VELKTLAVFSVAYNNLSGEI 679
           +L  NNL  L  S F+N   ++SL+L  N +            + L    + +N      
Sbjct: 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625

Query: 680 P--EWTAQFA--TFNESSYEGNTFLCGLP 704
               W   +   T        + +LC  P
Sbjct: 626 ESIAWFVNWINETHTNIPELSSHYLCNTP 654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  267 bits (684), Expect = 5e-79
 Identities = 127/643 (19%), Positives = 219/643 (34%), Gaps = 89/643 (13%)

Query: 45  MPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILD 104
              L  L +  +T+    S++  +    L  L+ L + +N+L        A  T+L  L 
Sbjct: 48  YSQLTSLDVGFNTI----SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103

Query: 105 VSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEI 164
           + SN +   I ++P V   ++  L LS+N       L        L+    +NN+I+  +
Sbjct: 104 LMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQ-AL 160

Query: 165 TESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLE-- 222
                    N  L+ L LSS        P   +    L  + L++V +       L    
Sbjct: 161 KSEELDIFANSSLKKLELSSNQIKEF-SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL 219

Query: 223 NNTKLRQLYLVNDSLTGPFRLPIHSHRW--LRFLDVSNNNFQGHIPVEIGDILPSLISFN 280
            NT +R L L N  L+          +W  L  LD+S NN            LP L  F 
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW-LPQLEYFF 278

Query: 281 ISMNALDSSIPSSFGNMNFLQILDLSNNQLTG--------EIPEHLAVSCVNLEFLALSN 332
           +  N +      S   +  ++ L+L  +            +I +        LE L + +
Sbjct: 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338

Query: 333 NNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLS----KCSSLEGLYLNNNSLSGKIP 388
           N++ G   +    L NL+ L L  +        + +      S L  L L  N +S    
Sbjct: 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398

Query: 389 RWLGNLTGLKHIIMPENHLEGPIPVG-FCQLYSLQILDISDNNISGSLPSCFHPL-SIEQ 446
                L  L+ + +  N +   +    +  L ++  + +S N       + F  + S+++
Sbjct: 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458

Query: 447 VHLSKNMLHGQLKR-GTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLE- 504
           + L +  L         F    +L  LDLS N +     + ++GL +L  L L HNNL  
Sbjct: 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR 518

Query: 505 -------GEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSL 557
                  G     L  L+ L +L+L +N         F +                    
Sbjct: 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD-------------------- 558

Query: 558 VMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRI 617
                                           L  L  +DL  N L         N   +
Sbjct: 559 --------------------------------LFELKIIDLGLNNLNTLPASVFNNQVSL 586

Query: 618 QTLNLSHNNLTGLIPSTFS-NLKHIESLDLSYNKLNGKIPHQL 659
           ++LNL  N +T +    F    +++  LD+ +N  +       
Sbjct: 587 KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIA 629

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  200 bits (510), Expect = 7e-55
 Identities = 80/448 (17%), Positives = 139/448 (31%), Gaps = 99/448 (22%)

Query: 251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQL 310
               D S+      +P    D+  ++   N++ N L     ++F   + L  LD+  N +
Sbjct: 6   HEVADCSHLKLT-QVP---DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 311 TGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKC 370
           +   PE                             L  L+ L L+ N L     ++ + C
Sbjct: 62  SKLEPELCQ-------------------------KLPMLKVLNLQHNELSQLSDKTFAFC 96

Query: 371 SSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNN 430
           ++L  L+L +NS+             L  + +  N L         QL +LQ L +S+N 
Sbjct: 97  TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156

Query: 431 ISGSLPSCFHPL---SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWV 487
           I              S++++ LS N +      G F     L  L L+  +L  S+   +
Sbjct: 157 IQALKSEELDIFANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215

Query: 488 ---DGLSQLSHLILGHNNLEGEVPVQL--CELNQLQLLDLSNNNLHGPIPPCFDNTTLHE 542
                 + + +L L ++ L           +   L +LDLS NNL+      F       
Sbjct: 216 CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW----- 270

Query: 543 SSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNK 602
                                                          L  L    L  N 
Sbjct: 271 -----------------------------------------------LPQLEYFFLEYNN 283

Query: 603 LIGHIPPQIGNLTRIQTLNLSHNNLTGLI---------PSTFSNLKHIESLDLSYNKLNG 653
           +       +  L  ++ LNL  +     I           +F  LK +E L++  N + G
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343

Query: 654 KIPHQLVELKTLAVFSVAYNNLSGEIPE 681
              +    L  L   S++ +  S     
Sbjct: 344 IKSNMFTGLINLKYLSLSNSFTSLRTLT 371

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  187 bits (478), Expect = 1e-50
 Identities = 93/464 (20%), Positives = 177/464 (38%), Gaps = 51/464 (10%)

Query: 44  SMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANM--TSLR 101
           ++  L  L +++  LG + +  L   L +   ++ L + N+ L  +       +  T+L 
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251

Query: 102 ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQ--IPISLEPLFNHSRLKIFDAANNE 159
           +LD+S N L   + +     L  +E   L  N+ Q     SL  LFN   ++  +   + 
Sbjct: 252 MLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN---VRYLNLKRSF 307

Query: 160 IKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNW 219
            K  I+ +      +F  Q L                     LE + +   N      + 
Sbjct: 308 TKQSISLASLPKIDDFSFQWLK-------------------CLEHLNMED-NDIPGIKSN 347

Query: 220 LLENNTKLRQLYLVNDSLTGPFRLPIHS-----HRWLRFLDVSNNNFQGHIPVEIGDILP 274
           +      L+ L L ++S T    L   +     H  L  L+++ N             L 
Sbjct: 348 MFTGLINLKYLSL-SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW-LG 405

Query: 275 SLISFNISMNALDSSIP-SSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNN 333
            L   ++ +N +   +    +  +  +  + LS N+         A    +L+ L L   
Sbjct: 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA-LVPSLQRLMLRRV 464

Query: 334 NLKGHMFSRNF--NLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLS------- 384
            LK    S +    L NL  L L  N++       L     LE L L +N+L+       
Sbjct: 465 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN 524

Query: 385 -GKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPL- 442
            G    +L  L+ L  + +  N  +      F  L+ L+I+D+  NN++    S F+   
Sbjct: 525 PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV 584

Query: 443 SIEQVHLSKNMLHGQLKRGTFFHC-SSLVTLDLSYNRLNGSIPN 485
           S++ ++L KN++   +++  F     +L  LD+ +N  + +  +
Sbjct: 585 SLKSLNLQKNLITS-VEKKVFGPAFRNLTELDMRFNPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  123 bits (312), Expect = 2e-29
 Identities = 68/356 (19%), Positives = 118/356 (33%), Gaps = 45/356 (12%)

Query: 15  FPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLM 74
           F   K L+HL+M      +      +    + +LKYLS+S+S     +         +  
Sbjct: 325 FQWLKCLEHLNM--EDNDIPGIKSNMFT-GLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381

Query: 75  HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH 134
            L  L +  N +        + +  L +LD+  N++   ++      L +I E+ LS N 
Sbjct: 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441

Query: 135 FQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPK 194
           +   ++         L+        +K  +  S S   P   L  L LS+          
Sbjct: 442 YLQ-LTRNSFALVPSLQRLMLRRVALK-NVDSSPSPFQPLRNLTILDLSN---------- 489

Query: 195 FLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYL--------VNDSLTGPFRLPIH 246
                           N      + +LE   KL  L L           +  G     + 
Sbjct: 490 ----------------NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK 533

Query: 247 SHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLS 306
               L  L++ +N F         D L  L   ++ +N L++   S F N   L+ L+L 
Sbjct: 534 GLSHLHILNLESNGFDEIPVEVFKD-LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ 592

Query: 307 NNQLTGEIPEHLAVSCVNLEFLALSNNNLKG-----HMFSRNFNLTNLRSLQLEGN 357
            N +T    +    +  NL  L +  N           F    N T+    +L  +
Sbjct: 593 KNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSH 648

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.0 bits (203), Expect = 3e-16
 Identities = 35/191 (18%), Positives = 56/191 (29%), Gaps = 55/191 (28%)

Query: 492 QLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLK 551
                   H  L  +VP  L     + +L+L++N L       F                
Sbjct: 5   SHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTR-------------- 47

Query: 552 PFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI 611
                                                  S L+ LD+  N +    P   
Sbjct: 48  --------------------------------------YSQLTSLDVGFNTISKLEPELC 69

Query: 612 GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVA 671
             L  ++ LNL HN L+ L   TF+   ++  L L  N +     +  V+ K L    ++
Sbjct: 70  QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 129

Query: 672 YNNLSGEIPEW 682
           +N LS      
Sbjct: 130 HNGLSSTKLGT 140

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.8 bits (109), Expect = 5e-05
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 615 TRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNN 674
              +  + SH  LT +     +N+     L+L++N+L             L    V +N 
Sbjct: 4   VSHEVADCSHLKLTQVPDDLPTNITV---LNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 675 LSGEIPE 681
           +S   PE
Sbjct: 61  ISKLEPE 67

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  263 bits (674), Expect = 4e-78
 Identities = 93/631 (14%), Positives = 190/631 (30%), Gaps = 111/631 (17%)

Query: 72  SLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSP---LVHLTSIEEL 128
           S   +  L ++     G +P  +  +T L +L + S+    +        +    S E+ 
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 129 MLSNNHFQ-IPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYG 187
                H+Q   +  +P  + S L      ++  +  I +S  +     +   +   S   
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI---TLKDTQIGQLS--- 192

Query: 188 DGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHS 247
                                  N        ++   TKLRQ Y+ N             
Sbjct: 193 -----------------------NNITFVSKAVM-RLTKLRQFYMGNSPFVAENICEA-- 226

Query: 248 HRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSN 307
                  +           ++  + L  L    +      + +P+    +  +Q+++++ 
Sbjct: 227 ---WENENSEYAQQYKTEDLKWDN-LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282

Query: 308 NQLTG--EIPEHL-----AVSCVNLEFLALSNNNLK-GHMFSRNFNLTNLRSLQLEGNHL 359
           N+     ++ +       A     ++ + +  NNLK   + +    +  L  L+   N L
Sbjct: 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL 342

Query: 360 EGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEG-PIPVGFCQL 418
           EG++P +      L  L L  N ++     + G    ++++    N L+  P       +
Sbjct: 343 EGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSV 401

Query: 419 YSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNR 478
             +  +D S N I       F PL                     F   ++ +++LS N+
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPT-----------------PFKGINVSSINLSNNQ 444

Query: 479 LNGSIPNWVDGLSQLSHLILGHNNLEG-------EVPVQLCELNQLQLLDLSNNNLHGPI 531
           ++          S LS + L  N L         +          L  +DL  N L   +
Sbjct: 445 ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-L 503

Query: 532 PPCFDNTTLHE------SSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIY 585
              F  TTL        S N+      F           P +                  
Sbjct: 504 SDDFRATTLPYLVGIDLSYNS------FSK--------FPTQ-------------PLNSS 536

Query: 586 QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLD 645
             K   + +  D   N+ +   P  I     +  L +  N++  +      N+     LD
Sbjct: 537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI---SVLD 593

Query: 646 LSYNKLNGKIPHQLVELKTLAVFSVAYNNLS 676
           +  N         +       ++ + Y+   
Sbjct: 594 IKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  226 bits (579), Expect = 1e-64
 Identities = 80/541 (14%), Positives = 169/541 (31%), Gaps = 74/541 (13%)

Query: 176 QLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWL---LENNTKLRQLYL 232
           ++  LSL      G   P  +    +LE + L           +    +  N    Q   
Sbjct: 82  RVTGLSLEGFGASG-RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQK 140

Query: 233 VNDSLTGPF--RLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSI 290
           +       F    P      L    ++++  Q  I      I           N + + +
Sbjct: 141 MRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR-ITLKDTQIGQLSNNI-TFV 198

Query: 291 PSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLR 350
             +   +  L+   + N+    E        C   E               +  NL +L 
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENI------CEAWENENSEYAQQYKTEDLKWDNLKDLT 252

Query: 351 SLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSL--------SGKIPRWLGNLTGLKHIIM 402
            +++       ++P  L     ++ + +  N            +          ++ I +
Sbjct: 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312

Query: 403 PENHL-EGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRG 461
             N+L   P+     ++  L +L+   N + G LP+    + +  ++L+ N +   +   
Sbjct: 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE-IPAN 371

Query: 462 TFFHCSSLVTLDLSYNRLNGSIPNWVD--GLSQLSHLILGHNNLEG-------EVPVQLC 512
                  +  L  ++N+L   IPN  D   +S +S +   +N +          +     
Sbjct: 372 FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430

Query: 513 ELNQLQLLDLSNNNLHGPIPPCFDN----TTLHESSNNSYSLKPFETSLVMDSMMIPAEK 568
           +   +  ++LSNN +       F      ++++   N                  IP   
Sbjct: 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM------LTE--------IPKNS 476

Query: 569 QIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI--GNLTRIQTLNLSHNN 626
              EN  F               LL+ +DL  NKL   +        L  +  ++LS+N+
Sbjct: 477 LKDENENFKN-----------TYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNS 524

Query: 627 LTGLIPSTFSNLKHIESL------DLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIP 680
            +   P+   N   ++        D   N+   + P  +    +L    +  N++   + 
Sbjct: 525 FSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VN 582

Query: 681 E 681
           E
Sbjct: 583 E 583

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  203 bits (519), Expect = 2e-56
 Identities = 79/549 (14%), Positives = 164/549 (29%), Gaps = 66/549 (12%)

Query: 17  HFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQ-GLCSLMH 75
               L+ L +         +      + + +                  +D         
Sbjct: 103 QLTELEVLAL--GSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160

Query: 76  LQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHF 135
           L +  I+++  + S+            +   SN +T  +S + ++ LT + +  + N+ F
Sbjct: 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKA-VMRLTKLRQFYMGNSPF 218

Query: 136 --QIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFP 193
             +         N    + +   + +         +L      L  + + +        P
Sbjct: 219 VAENICEAWENENSEYAQQYKTEDLKW-------DNLK----DLTDVEVYNCPNLT-KLP 266

Query: 194 KFLYHQHDLEDVRLSHVNMDGEFPNWL-------LENNTKLRQLYLVNDSL-TGPFRLPI 245
            FL    +++ + ++                        K++ +Y+  ++L T P    +
Sbjct: 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326

Query: 246 HSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDL 305
              + L  L+   N  +G +P   G     L S N++ N +     +  G    ++ L  
Sbjct: 327 QKMKKLGMLECLYNQLEGKLP-AFGS-EIKLASLNLAYNQITEIPANFCGFTEQVENLSF 384

Query: 306 SNNQLTGEIPEHLAVSCVNLEFLALSNNNLKG-------HMFSRNFNLTNLRSLQLEGNH 358
           ++N+L        A S   +  +  S N +          +    F   N+ S+ L  N 
Sbjct: 385 AHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444

Query: 359 LEGEIPQSLSKCSSLEGLYLNNNSLSG-------KIPRWLGNLTGLKHIIMPENHLEG-P 410
           +     +  S  S L  + L  N L+               N   L  I +  N L    
Sbjct: 445 ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS 504

Query: 411 IPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLV 470
                  L  L  +D+S N+ S   P+                          F   +  
Sbjct: 505 DDFRATTLPYLVGIDLSYNSFSK-FPTQP----------------LNSSTLKGFGIRN-- 545

Query: 471 TLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGP 530
             D   NR     P  +     L+ L +G N++   V  ++     + +LD+ +N     
Sbjct: 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISI 602

Query: 531 IPPCFDNTT 539
                    
Sbjct: 603 DLSYVCPYI 611

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  197 bits (502), Expect = 5e-54
 Identities = 55/493 (11%), Positives = 140/493 (28%), Gaps = 108/493 (21%)

Query: 208 SHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPV 267
             ++M G  P   L +N ++  L L                              G +P 
Sbjct: 64  KELDMWGAQPGVSLNSNGRVTGLSL------------------------EGFGASGRVPD 99

Query: 268 EIGDILPSLISFNISMNAL----DSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLA-VSC 322
            IG  L  L    +  +          P         +              ++      
Sbjct: 100 AIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF 158

Query: 323 VNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNS 382
            +L    ++++  +  +   +        +    N++   + +++ + + L   Y+ N+ 
Sbjct: 159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSP 217

Query: 383 LSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPL 442
              +           ++             + +  L  L  +++ +      LP+    L
Sbjct: 218 FVAENICEAWENENSEY-----AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272

Query: 443 -SIEQVHLSKNMLHGQLKR-------GTFFHCSSLVTLDLSYNRL-NGSIPNWVDGLSQL 493
             ++ ++++ N      +                +  + + YN L    +   +  + +L
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332

Query: 494 SHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPF 553
             L   +N LEG++P       +L  L+L+ N +                          
Sbjct: 333 GMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGF---------------- 375

Query: 554 ETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPP--QI 611
                                                  +  L  + NKL  +IP     
Sbjct: 376 ------------------------------------TEQVENLSFAHNKL-KYIPNIFDA 398

Query: 612 GNLTRIQTLNLSHNNLTGL-------IPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKT 664
            +++ +  ++ S+N +  +       +  T     ++ S++LS N+++            
Sbjct: 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP 458

Query: 665 LAVFSVAYNNLSG 677
           L+  ++  N L+ 
Sbjct: 459 LSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  192 bits (489), Expect = 2e-52
 Identities = 57/449 (12%), Positives = 133/449 (29%), Gaps = 83/449 (18%)

Query: 250 WLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQ 309
               L+  N + QG           +  +FN  ++   +    S  +   +  L L    
Sbjct: 38  IWDALNGKNWSQQGFGTQ-----PGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFG 92

Query: 310 LTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNF----NLTNLRSLQLEGNHLEGEIPQ 365
            +G +P+ +      LE LAL ++  K +             +    Q    H +     
Sbjct: 93  ASGRVPDAIG-QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVD 151

Query: 366 SLSK--CSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQI 423
              +   S L    +N++     I +          I    N++   +     +L  L+ 
Sbjct: 152 YDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQ 210

Query: 424 LDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSI 483
             + ++                  +      +       + +   L  +++        +
Sbjct: 211 FYMGNSPFVAENICEAWENE----NSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKL 265

Query: 484 PNWVDGLSQLSHLILGHNNL--------EGEVPVQLCELNQLQLLDLSNNNL-HGPIPPC 534
           P ++  L ++  + +  N          + +         ++Q++ +  NNL   P+   
Sbjct: 266 PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS 325

Query: 535 FDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLS 594
                                                                  +  L 
Sbjct: 326 LQK----------------------------------------------------MKKLG 333

Query: 595 GLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGK 654
            L+   N+L G   P  G+  ++ +LNL++N +T +  +     + +E+L  ++NKL   
Sbjct: 334 MLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY- 391

Query: 655 IP--HQLVELKTLAVFSVAYNNLSGEIPE 681
           IP       +  ++    +YN +     +
Sbjct: 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  182 bits (463), Expect = 6e-49
 Identities = 67/466 (14%), Positives = 131/466 (28%), Gaps = 99/466 (21%)

Query: 61  NSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISS---- 116
              +  D    +L  L ++ + N      LP  L  +  +++++V+ N+           
Sbjct: 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW 295

Query: 117 ---SPLVHLTSIEELMLSNNHFQ-IPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTA 172
              +       I+ + +  N+ +  P+    L    +L + +   N+++ ++    S   
Sbjct: 296 QALADAPVGEKIQIIYIGYNNLKTFPVETS-LQKMKKLGMLECLYNQLEGKLPAFGSEI- 353

Query: 173 PNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYL 232
              +L +L+L+                           N   E P        ++  L  
Sbjct: 354 ---KLASLNLAY--------------------------NQITEIPANFCGFTEQVENLSF 384

Query: 233 VNDSLTG-PFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDI------LPSLISFNISMNA 285
            ++ L   P      S   +  +D S N            +        ++ S N+S N 
Sbjct: 385 AHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444

Query: 286 LDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAV------SCVNLEFLALSNNNLKGHM 339
           +       F   + L  ++L  N LT      L        +   L  + L  N L    
Sbjct: 445 ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS 504

Query: 340 FSRNF-NLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLK 398
                  L  L  + L  N      P      S+L+G  + N                  
Sbjct: 505 DDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ----------------- 546

Query: 399 HIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQL 458
                 N      P G     SL  L I  N+I   +                       
Sbjct: 547 -RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI------------------- 585

Query: 459 KRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLE 504
                    ++  LD+  N       ++V    +    +L ++  +
Sbjct: 586 -------TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 97.0 bits (242), Expect = 5e-21
 Identities = 24/218 (11%), Positives = 62/218 (28%), Gaps = 16/218 (7%)

Query: 471 TLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGP 530
             +   +         ++   +++ L L      G VP  + +L +L++L L ++     
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 531 ----IPPCFDNTTLHESSNNS--YSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYI 584
                P         E       +  K F      +      +  I+ + +  +   +  
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS-- 178

Query: 585 YQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESL 644
                L     +    N +   +   +  LT+++   + ++                   
Sbjct: 179 -SRITLKDTQ-IGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-----E 230

Query: 645 DLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEW 682
           +  Y +       +   LK L    V       ++P +
Sbjct: 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF 268

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  236 bits (604), Expect = 2e-68
 Identities = 119/652 (18%), Positives = 195/652 (29%), Gaps = 126/652 (19%)

Query: 44  SMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRIL 103
           S P L+ L +S   +      I D    SL HL  L +  N ++       + ++SL+ L
Sbjct: 50  SFPELQVLDLSRCEI----QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105

Query: 104 DVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAE 163
                 L    +   + HL +++EL +++N  Q     E   N + L+  D ++N+I++ 
Sbjct: 106 VAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 164 ITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLEN 223
                        L  LSL                        LS   M+   P      
Sbjct: 165 YCTDLR-VLHQMPLLNLSLD-----------------------LSLNPMNFIQPGAF--K 198

Query: 224 NTKLRQLYLVNDSLTGPF-RLPIHSHRWLRFLDVSNNNFQGHIPVEIGDI--LPSLISFN 280
             +L +L L N+  +    +  I     L    +    F+    +E  D   L  L +  
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 281 ISMNAL------DSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNN 334
           I    L         I   F  +  +    L +  +               + L L N  
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY---NFGWQHLELVNCK 315

Query: 335 LKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNL 394
                  +  +L  L     +G         S     SLE L L+ N LS          
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGG-----NAFSEVDLPSLEFLDLSRNGLS---------- 360

Query: 395 TGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNML 454
                        +G          SL+ LD+S N +     +      +E +    + L
Sbjct: 361 ------------FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408

Query: 455 HGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEV-PVQLCE 513
               +   F    +L+ LD+S+     +     +GLS L  L +  N+ +    P    E
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 514 LNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHEN 573
           L  L  LDLS   L    P  F++                                    
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNS------------------------------------ 492

Query: 574 FEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPS 633
                           LS L  L++S N            L  +Q L+ S N++      
Sbjct: 493 ----------------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536

Query: 634 TFSNL-KHIESLDLSYNKLNGKIPHQ--LVELKTLAVFSVAYNNLSGEIPEW 682
              +    +  L+L+ N       HQ  L  +K      V    +    P  
Sbjct: 537 ELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 588

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  235 bits (602), Expect = 4e-68
 Identities = 119/627 (18%), Positives = 214/627 (34%), Gaps = 116/627 (18%)

Query: 75  HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH 134
             + L +  N LR    +   +   L++LD+S  ++      +    L+ +  L+L+ N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTGNP 87

Query: 135 FQIPISLEPLFNHSRLKIFDAANNEIKAEITES-HSLTAPNFQLQALSLSSGYGDGVTFP 193
            Q  ++L      S L+   A    + +        L      L+ L+++          
Sbjct: 88  IQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLK----TLKELNVAHNL------- 135

Query: 194 KFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRF 253
                        +    +   F N             L N                L  
Sbjct: 136 -------------IQSFKLPEYFSN-------------LTN----------------LEH 153

Query: 254 LDVSNNNFQGHIPVEIGDILPSL----ISFNISMNALDSSIPSSFGNMNFLQILDLSNNQ 309
           LD+S+N  Q     ++   L  +    +S ++S+N ++   P +F  +  L  L L NN 
Sbjct: 154 LDLSSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNF 211

Query: 310 LTGEIPEHLAVSCVNLEFLALSNNNLKGHM---FSRNFNLTNLRSLQLEGNHLE------ 360
            +  + +        LE   L     +            L  L +L +E   L       
Sbjct: 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271

Query: 361 GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYS 420
            +I    +  +++    L + ++            G +H+ +              +L S
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQ---FPTLKLKS 326

Query: 421 LQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQ-LKRGTFFHCSSLVTLDLSYNRL 479
           L+ L  + N    +      P S+E + LS+N L  +     + F  +SL  LDLS+N +
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLP-SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 480 NGSIPNWVDGLSQLSHLILGHNNLEGEVPVQ-LCELNQLQLLDLSNNNLHGPIPPCFDN- 537
                N+  GL QL HL   H+NL+          L  L  LD+S+ +        F+  
Sbjct: 386 ITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444

Query: 538 ---TTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLS 594
                L  + N+      F+ + + D                             L  L+
Sbjct: 445 SSLEVLKMAGNS------FQENFLPDIF-------------------------TELRNLT 473

Query: 595 GLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGK 654
            LDLS  +L    P    +L+ +Q LN+SHNN   L    +  L  ++ LD S N +   
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 533

Query: 655 IPHQLVEL-KTLAVFSVAYNNLSGEIP 680
              +L     +LA  ++  N+ +    
Sbjct: 534 KKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  192 bits (490), Expect = 1e-52
 Identities = 81/449 (18%), Positives = 153/449 (34%), Gaps = 65/449 (14%)

Query: 255 DVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEI 314
                NF   IP    ++  S  + ++S N L      SF +   LQ+LDLS  ++    
Sbjct: 13  QCMELNFY-KIP---DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 315 PEHLAVSCVNLEFLALSNNNLKG---HMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCS 371
                 S  +L  L L+ N ++      FS    L++L+ L     +L       +    
Sbjct: 69  DGAYQ-SLSHLSTLILTGNPIQSLALGAFS---GLSSLQKLVAVETNLASLENFPIGHLK 124

Query: 372 SLEGLYLNNNSL-SGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQI----LDI 426
           +L+ L + +N + S K+P +  NLT L+H+ +  N ++         L+ + +    LD+
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 427 SDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGS---- 482
           S N ++   P  F  + + ++ L  N     + +      + L    L            
Sbjct: 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 483 --IPNWVDGLSQLSHLILGHNNLE---GEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDN 537
               + ++GL  L+        L+    ++      L  +    L +  +       ++ 
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF 304

Query: 538 TTLH-ESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGL 596
              H E  N  +   P                                     L L S  
Sbjct: 305 GWQHLELVNCKFGQFPT------------------------------------LKLKSLK 328

Query: 597 DLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT--GLIPSTFSNLKHIESLDLSYNKLNGK 654
            L+     G       +L  ++ L+LS N L+  G    +      ++ LDLS+N +   
Sbjct: 329 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT- 387

Query: 655 IPHQLVELKTLAVFSVAYNNLSGEIPEWT 683
           +    + L+ L      ++NL        
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  223 bits (571), Expect = 6e-67
 Identities = 83/360 (23%), Positives = 137/360 (38%), Gaps = 73/360 (20%)

Query: 362 EIPQSLSKCSSL----EGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEG--PIPVGF 415
           +I + L   ++L          N +  G +         + ++ +   +L    PIP   
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 416 CQLYSLQILDISD-NNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDL 474
             L  L  L I   NN+ G +P                              + L  L +
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPP------------------------AIAKLTQLHYLYI 108

Query: 475 SYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPC 534
           ++  ++G+IP+++  +  L  L   +N L G +P  +  L  L  +    N + G IP  
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 535 FDN-TTLHES---SNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVL 590
           + + + L  S   S N  + K            IP                         
Sbjct: 169 YGSFSKLFTSMTISRNRLTGK------------IPPT----------------------F 194

Query: 591 SLLS--GLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSY 648
           + L+   +DLS N L G      G+    Q ++L+ N+L   +       K++  LDL  
Sbjct: 195 ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRN 253

Query: 649 NKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPIC 708
           N++ G +P  L +LK L   +V++NNL GEIP+       F+ S+Y  N  LCG PLP C
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  220 bits (563), Expect = 9e-66
 Identities = 80/288 (27%), Positives = 120/288 (41%), Gaps = 32/288 (11%)

Query: 250 WLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALD--SSIPSSFGNMNFLQILDLSN 307
           WL   D  N  + G +          + + ++S   L     IPSS  N+ +L  L +  
Sbjct: 27  WLPTTDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG 85

Query: 308 -NQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQS 366
            N L G IP  +A                          LT L  L +   ++ G IP  
Sbjct: 86  INNLVGPIPPAIA-------------------------KLTQLHYLYITHTNVSGAIPDF 120

Query: 367 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSL-QILD 425
           LS+  +L  L  + N+LSG +P  + +L  L  I    N + G IP  +     L   + 
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180

Query: 426 ISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPN 485
           IS N ++G +P  F  L++  V LS+NML G      F    +   + L+ N L   +  
Sbjct: 181 ISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASV-LFGSDKNTQKIHLAKNSLAFDLGK 239

Query: 486 WVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPP 533
            V     L+ L L +N + G +P  L +L  L  L++S NNL G IP 
Sbjct: 240 -VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  198 bits (505), Expect = 1e-57
 Identities = 83/347 (23%), Positives = 127/347 (36%), Gaps = 66/347 (19%)

Query: 289 SIPSSFGNMNFLQ----ILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNF 344
            I    GN   L       D  N    G + +        +  L LS  NL       + 
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSS 71

Query: 345 --NLTNLRSLQLEG-NHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHII 401
             NL  L  L + G N+L G IP +++K + L  LY+ + ++SG IP +L  +  L  + 
Sbjct: 72  LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 402 MPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLS--IEQVHLSKNMLHGQLK 459
              N L G +P     L +L  +    N ISG++P  +   S     + +S+N L G++ 
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

Query: 460 RGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQL 519
             TF +  +L  +DLS N L G              + L  N+L  ++  ++     L  
Sbjct: 192 P-TFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNG 248

Query: 520 LDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTK 579
           LDL NN ++G +P                                               
Sbjct: 249 LDLRNNRIYGTLPQGLTQ------------------------------------------ 266

Query: 580 NIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN 626
                     L  L  L++S N L G I PQ GNL R      ++N 
Sbjct: 267 ----------LKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  173 bits (441), Expect = 1e-48
 Identities = 71/268 (26%), Positives = 118/268 (44%), Gaps = 11/268 (4%)

Query: 176 QLQALSLSSGYGDG-VTFPKFLYHQHDLEDVRLSHVNM-DGEFPNWLLENNTKLRQLYLV 233
           ++  L LS          P  L +   L  + +  +N   G  P  +    T+L  LY+ 
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYIT 109

Query: 234 NDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSS 293
           + +++G     +   + L  LD S N   G +P  I   LP+L+      N +  +IP S
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDS 168

Query: 294 FGNM-NFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSL 352
           +G+       + +S N+LTG+IP     + +NL F+ LS N L+G       +  N + +
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPP--TFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 353 QLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIP 412
            L  N L  ++   +    +L GL L NN + G +P+ L  L  L  + +  N+L G IP
Sbjct: 227 HLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 413 VGFCQLYSLQILDISDNNI--SGSLPSC 438
            G   L    +   ++N       LP+C
Sbjct: 286 QGG-NLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  126 bits (319), Expect = 3e-32
 Identities = 59/296 (19%), Positives = 108/296 (36%), Gaps = 46/296 (15%)

Query: 44  SMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYI-DNNDLRGSLPWCLANMTSLRI 102
               +  L +S   L      I    L +L +L  LYI   N+L G +P  +A +T L  
Sbjct: 48  QTYRVNNLDLSGLNL-PKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 103 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNHF--QIPISLEPLFNHSRLKIFDAANNEI 160
           L ++   ++G+I    L  + ++  L  S N     +P S+    +   L       N I
Sbjct: 106 LYITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSI---SSLPNLVGITFDGNRI 161

Query: 161 KAEITESHSLTAPN--FQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPN 218
              I        P+       L                        + +S   + G+ P 
Sbjct: 162 SGAI--------PDSYGSFSKL---------------------FTSMTISRNRLTGKIPP 192

Query: 219 WLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLIS 278
                N  L  + L  + L G   +   S +  + + ++ N+    +  ++G    +L  
Sbjct: 193 TF--ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGL-SKNLNG 248

Query: 279 FNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNN 334
            ++  N +  ++P     + FL  L++S N L GEIP+    +    +  A +NN 
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG--NLQRFDVSAYANNK 302

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  235 bits (600), Expect = 5e-66
 Identities = 93/667 (13%), Positives = 188/667 (28%), Gaps = 145/667 (21%)

Query: 70  LCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 129
           L +   +  L +     +G +P  +  +T L++L   ++  T S        L + +   
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL-TPDMSE 377

Query: 130 LSNNHFQIPISLEPLFNHSRLKIFDAANNEIKA--EITESHSLTAPNFQLQALSLSSGYG 187
              +  ++      L    RL + D   + I    E+      +  + +   +   +   
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT--- 434

Query: 188 DGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHS 247
                                  N         ++  TKL+ +Y  N   T       + 
Sbjct: 435 -----------------------NRITFISKA-IQRLTKLQIIYFANSPFTY-----DNI 465

Query: 248 HRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSN 307
                  +        +  +   + L  L    +      + +P    ++  LQ L+++ 
Sbjct: 466 AVDWEDANSDYAKQYENEELSWSN-LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524

Query: 308 NQLTGEIPEHLAVS--------CVNLEFLALSNNNLKGHMFSRNF-NLTNLRSLQLEGNH 358
           N+           +           ++   +  NNL+    S +   +  L  L    N 
Sbjct: 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK 584

Query: 359 LEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTG-LKHIIMPENHLEG-PIPVGFC 416
           +     ++      L  L L+ N +   IP      T  ++ +    N L+  P      
Sbjct: 585 V--RHLEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAK 641

Query: 417 QLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSY 476
            +Y +  +D S N I     +    +                     +   +  T+ LSY
Sbjct: 642 SVYVMGSVDFSYNKIGSEGRNISCSMDD-------------------YKGINASTVTLSY 682

Query: 477 NRLNGSIPNWVDGLSQLSHLILGHNNLE-------GEVPVQLCELNQLQLLDLSNNNLHG 529
           N +           S +S +IL +N +                    L  +DL  N L  
Sbjct: 683 NEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742

Query: 530 PIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKV 589
                                                   + ++F  TT           
Sbjct: 743 ----------------------------------------LSDDFRATT----------- 751

Query: 590 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSH------NNLTGLIPSTFSNLKHIES 643
           L  LS +D+S N      P Q  N ++++   + H      N +    P+  +    +  
Sbjct: 752 LPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810

Query: 644 LDLSYNKLNGKIPHQLVELKTLAVFSVAYNNL-----SGEIPEWTAQFATFNESSYEGNT 698
           L +  N +  K+  +L     L +  +A N       +   P   A         Y+   
Sbjct: 811 LQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVL---LYDKTQ 864

Query: 699 FLCGLPL 705
            + G   
Sbjct: 865 DIRGCDA 871

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  193 bits (493), Expect = 7e-52
 Identities = 79/501 (15%), Positives = 147/501 (29%), Gaps = 88/501 (17%)

Query: 208 SHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPV 267
             ++M G+ P   L+NN ++  L L      G     I     L+ L    ++      +
Sbjct: 306 KELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRL 365

Query: 268 EIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTG--EIPEHLAVSCVNL 325
              + L   +S                     L + DL  + +    E+      S ++L
Sbjct: 366 FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISL 425

Query: 326 EFLALSNNNLKGHMFSRNF-NLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLS 384
           +   + N   +    S+    LT L+ +    +    +           E    +     
Sbjct: 426 KDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNI-----AVDWEDANSDYAKQY 480

Query: 385 GKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISG---------SL 435
                   NL  L  + +        +P     L  LQ L+I+ N              L
Sbjct: 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRL 540

Query: 436 PSCFHPL-SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLS 494
                    I+  ++  N L       +      L  LD  +N++   +  +     +L+
Sbjct: 541 ADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFG-TNVKLT 598

Query: 495 HLILGHNNLEGEVPVQLCE-LNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPF 553
            L L +N +E E+P   C   +Q++ L  S+N L   IP  F+  +++            
Sbjct: 599 DLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYV----------- 645

Query: 554 ETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIG- 612
                                                  +  +D S NK IG     I  
Sbjct: 646 ---------------------------------------MGSVDFSYNK-IGSEGRNISC 665

Query: 613 -----NLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL-------NGKIPHQLV 660
                      T+ LS+N +       F+    I ++ LS N +                
Sbjct: 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725

Query: 661 ELKTLAVFSVAYNNLSGEIPE 681
               L    + +N L+  + +
Sbjct: 726 NTYLLTTIDLRFNKLT-SLSD 745

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  188 bits (480), Expect = 3e-50
 Identities = 77/545 (14%), Positives = 170/545 (31%), Gaps = 75/545 (13%)

Query: 7   NGLVRGQGFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRIL 66
           +           + L        +  +   + ++  +    L    +    +  N     
Sbjct: 357 HSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416

Query: 67  DQGLCSLMHLQELYIDNNDLR-GSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSI 125
            +   S + L++  I N   R   +   +  +T L+I+  +++  T    +         
Sbjct: 417 IKKD-SRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDA--- 472

Query: 126 EELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITES-HSLTAPNFQLQALSLSS 184
                +  +    +S   L     L   +  N     ++ +  + L     +LQ+L+++ 
Sbjct: 473 -NSDYAKQYENEELSWSNL---KDLTDVELYNCPNMTQLPDFLYDLP----ELQSLNIAC 524

Query: 185 GYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTG-PFRL 243
                               ++     +  +      +   K++  Y+  ++L   P   
Sbjct: 525 ------------NRGISAAQLKADWTRLADDE-----DTGPKIQIFYMGYNNLEEFPASA 567

Query: 244 PIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQIL 303
            +     L  LD  +N  + H+    G     L    +  N ++          + ++ L
Sbjct: 568 SLQKMVKLGLLDCVHNKVR-HLE-AFGT-NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGL 624

Query: 304 DLSNNQLTGEIPEHLAV-SCVNLEFLALSNNNLKGH-----MFSRNFNLTNLRSLQLEGN 357
             S+N+L   IP      S   +  +  S N +            ++   N  ++ L  N
Sbjct: 625 GFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683

Query: 358 HLEGEIPQSLSKCSSLEGLYLNNNSLS-------GKIPRWLGNLTGLKHIIMPENHLEG- 409
            ++    +  +  S +  + L+NN ++               N   L  I +  N L   
Sbjct: 684 EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL 743

Query: 410 PIPVGFCQLYSLQILDISDNNISGSLPSCFHPLS-IEQVHLSKNMLHGQLKRGTFFHCSS 468
                   L  L  +D+S N  S S P+     S ++   +                   
Sbjct: 744 SDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQ---------------- 786

Query: 469 LVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNL- 527
               D   NR+    P  +     L  L +G N++  +V  +L    QL +LD+++N   
Sbjct: 787 ---RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNI 840

Query: 528 HGPIP 532
              + 
Sbjct: 841 SIDVT 845

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  187 bits (477), Expect = 8e-50
 Identities = 91/648 (14%), Positives = 187/648 (28%), Gaps = 137/648 (21%)

Query: 40  IIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTS 99
           +  ++   +  LS++    G  +   +   +  L  L+ L    +    S         +
Sbjct: 317 VDLDNNGRVTGLSLA----GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELT 372

Query: 100 LRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNE 159
             + +   +++        L +   +    L  +       ++P+   SR+ + D     
Sbjct: 373 PDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGN 432

Query: 160 IKAEITE-----------------SHSLTAPNFQLQALSLSSGYGDGVT-FPKFLYHQHD 201
           +   IT                  +   T  N  +     +S Y            +  D
Sbjct: 433 LTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKD 492

Query: 202 LEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLP---------IHSHRWLR 252
           L DV L +     + P++L  +  +L+ L +  +      +L            +   ++
Sbjct: 493 LTDVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551

Query: 253 FLDVSNNNFQGHIPVEIG-DILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLT 311
              +  NN +   P       +  L   +   N +      +FG    L  L L  NQ+ 
Sbjct: 552 IFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE 608

Query: 312 GEIPEHLAVSCVNLEFLALSNNNLKG--HMFSRNFNLTNLRSLQLEGNHLEGEIPQ---- 365
            EIPE        +E L  S+N LK   ++F+   ++  + S+    N +  E       
Sbjct: 609 -EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAK-SVYVMGSVDFSYNKIGSEGRNISCS 666

Query: 366 -SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLE-------GPIPVGFCQ 417
               K  +   + L+ N +           + +  II+  N +         P    +  
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726

Query: 418 LYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYN 477
            Y L  +D+  N ++                LS +     L          L  +D+SYN
Sbjct: 727 TYLLTTIDLRFNKLTS---------------LSDDFRATTLP--------YLSNMDVSYN 763

Query: 478 RLNGSIPNWVDGLSQLSHLILGH------NNLEGEVPVQLCELNQLQLLDLSNNNLHGPI 531
             + S P      SQL    + H      N +  + P  +     L  L + +N++    
Sbjct: 764 CFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-- 820

Query: 532 PPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLS 591
                                           +  +                     +  
Sbjct: 821 --------------------------------VDEK---------------------LTP 827

Query: 592 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLK 639
            L  LD++ N  I      +          L ++    +       ++
Sbjct: 828 QLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  178 bits (453), Expect = 9e-47
 Identities = 56/425 (13%), Positives = 125/425 (29%), Gaps = 62/425 (14%)

Query: 278 SFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKG 337
           +FN  ++           N   +  L L+     G +P+ +      L+ L+   ++   
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIG-QLTELKVLSFGTHSETV 361

Query: 338 -------HMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW 390
                     + + +      +++    +  +  Q L+    L+     N  +       
Sbjct: 362 SGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421

Query: 391 LGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLS 450
             +L     I    N +   I     +L  LQI+  +++  +                  
Sbjct: 422 RISLKDT-QIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNI-------------- 465

Query: 451 KNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQ 510
                                 +  Y +   +       L  L+ + L +     ++P  
Sbjct: 466 ---------------AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF 510

Query: 511 LCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQI 570
           L +L +LQ L+++ N          D T L +  +    +        M    +   ++ 
Sbjct: 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI----QIFYMGYNNL---EEF 563

Query: 571 HENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGL 630
             +                +  L  LD   NK+        G   ++  L L +N +  +
Sbjct: 564 PASASLQK-----------MVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEEI 610

Query: 631 IPSTFSNLKHIESLDLSYNKLNGKIPH--QLVELKTLAVFSVAYNNLSGEIPEWTAQFAT 688
                +    +E L  S+NKL   IP+      +  +     +YN +  E    +     
Sbjct: 611 PEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669

Query: 689 FNESS 693
           +   +
Sbjct: 670 YKGIN 674

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  171 bits (436), Expect = 2e-44
 Identities = 73/555 (13%), Positives = 168/555 (30%), Gaps = 117/555 (21%)

Query: 157 NNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEF 216
            + IK    E+ S+   +F +    L+      +   +   +  D + ++     +DG  
Sbjct: 226 QSGIKRSELETQSVRGESFTVIDNKLTKDANVPIQLKETAEYIKDYKALKAIWEALDG-- 283

Query: 217 PNWLLENNTKLRQLYLVN-------DSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEI 269
            NW   + T    ++ +N       D       + + ++  +  L ++    +G +P  I
Sbjct: 284 KNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAI 343

Query: 270 GDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLA 329
           G  L  L   +   ++   S            + +   +++     +        L    
Sbjct: 344 GQ-LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402

Query: 330 LSNNNLKGH---MFSRNFNLTNLRSLQLEG--NHLEGEIPQSLSKCSSLEGLYLNNNSLS 384
           L  + +  +      +  +  +L+  Q+    N +   I +++ + + L+ +Y  N+  +
Sbjct: 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFT 461

Query: 385 GKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSI 444
                        +              + +  L  L  +++ +      LP        
Sbjct: 462 YDNI-----AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD------- 509

Query: 445 EQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNG---------SIPNWVDGLSQLSH 495
                              +    L +L+++ NR             + +  D   ++  
Sbjct: 510 -----------------FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552

Query: 496 LILGHNNLEG-EVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFE 554
             +G+NNLE       L ++ +L LLD  +N +       F                   
Sbjct: 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGT----------------- 593

Query: 555 TSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNL 614
                                                 L+ L L  N++   IP      
Sbjct: 594 -----------------------------------NVKLTDLKLDYNQIE-EIPEDFCAF 617

Query: 615 TR-IQTLNLSHNNLTGLIPST-FSNLKHIESLDLSYNKLNGKIPHQLV-----ELKTLAV 667
           T  ++ L  SHN L  +       ++  + S+D SYNK+  +  +        +    + 
Sbjct: 618 TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677

Query: 668 FSVAYNNLSGEIPEW 682
            +++YN +     E 
Sbjct: 678 VTLSYNEIQKFPTEL 692

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.2 bits (99), Expect = 7e-04
 Identities = 12/86 (13%), Positives = 26/86 (30%)

Query: 619 TLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGE 678
             N   +           N   +  L L+     G++P  + +L  L V S   ++ +  
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 679 IPEWTAQFATFNESSYEGNTFLCGLP 704
              +  +  T + S    +       
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYK 388

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  219 bits (561), Expect = 2e-62
 Identities = 124/617 (20%), Positives = 210/617 (34%), Gaps = 119/617 (19%)

Query: 45  MPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILD 104
           + +L +L ++   +      I +    S   L  L +  N L       L+   +L+ L 
Sbjct: 56  LINLTFLDLTRCQI----YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111

Query: 105 VSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEI 164
                ++ SI   PL +  ++E L L +NH    I L   F   +LK+ D  NN I    
Sbjct: 112 FIQTGIS-SIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLS 169

Query: 165 TES-HSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLEN 223
            E   SL     Q   LSL+    D        +     + +              L  +
Sbjct: 170 KEDMSSLQ----QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNS 225

Query: 224 NTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISM 283
                                I S     F D+ + +    +    G    S+ S N+  
Sbjct: 226 T--------------------IQSLWLGTFEDMDDEDISPAVFE--GLCEMSVESINLQK 263

Query: 284 NALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRN 343
           +   +   ++F   + LQ LDL+   L+ E+P  L                         
Sbjct: 264 HYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL------------------------- 297

Query: 344 FNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKI-PRWLGNLTGLKHIIM 402
             L+ L+ L L  N  E     S S   SL  L +  N+   ++    L NL  L+ + +
Sbjct: 298 VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357

Query: 403 PENHLE--GPIPVGFCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHGQLK 459
             + +E      +    L  LQ L++S N         F     +E + L+   L  +  
Sbjct: 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417

Query: 460 RGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQ---LCELNQ 516
           +  F +   L  L+LS++ L+ S     DGL  L HL L  N+       +   L  L +
Sbjct: 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477

Query: 517 LQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEF 576
           L++L LS  +L       F +                                       
Sbjct: 478 LEILVLSFCDLSSIDQHAFTS--------------------------------------- 498

Query: 577 TTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFS 636
                        L +++ +DLS N+L       + +L  I  LNL+ N+++ ++PS   
Sbjct: 499 -------------LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLP 544

Query: 637 NLKHIESLDLSYNKLNG 653
            L    +++L  N L+ 
Sbjct: 545 ILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  216 bits (552), Expect = 4e-61
 Identities = 121/633 (19%), Positives = 206/633 (32%), Gaps = 63/633 (9%)

Query: 101 RILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEI 160
           +  +  +  L       P     S E L  S N     I          L   D    +I
Sbjct: 15  KTYNCENLGLN----EIPGTLPNSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQI 69

Query: 161 KAEITES-HSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNW 219
                ++  S      +L  L L++     +     L     L+ +      +       
Sbjct: 70  YWIHEDTFQSQH----RLDTLVLTANPLIFMA-ETALSGPKALKHLFFIQTGISSIDFI- 123

Query: 220 LLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSL--I 277
            L N   L  LYL ++ ++            L+ LD  NN    ++  E    L     +
Sbjct: 124 PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNL 182

Query: 278 SFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLA-VSCVNLEFLALSNNNLK 336
           S N++ N + + I     +    Q L+    Q    I + L   +  +L      + + +
Sbjct: 183 SLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241

Query: 337 G--HMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNL 394
                        ++ S+ L+ ++       +    S L+ L L    LS ++P  L  L
Sbjct: 242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGL 300

Query: 395 TGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPS-CFHPL-SIEQVHLSKN 452
           + LK +++  N  E    +      SL  L I  N     L + C   L ++ ++ LS +
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360

Query: 453 MLHG-QLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEG-EVPVQ 510
            +           + S L +L+LSYN              QL  L L    L+  +    
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

Query: 511 LCELNQLQLLDLSNNNLHGPIPPCFDN----TTLHESSNNSYSLKPFETSLVMDSMMIPA 566
              L+ L++L+LS++ L       FD       L+   N+                    
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH-------------------- 460

Query: 567 EKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN 626
                    F   NI      + L  L  L LS   L         +L  +  ++LSHN 
Sbjct: 461 ---------FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511

Query: 627 LTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQF 686
           LT       S+LK I  L+L+ N ++  +P  L  L      ++  N L           
Sbjct: 512 LTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC-----SN 565

Query: 687 ATFNESSYEGNTFLCGLPLPICRSPATMSEASI 719
             F E   E    L      +C +P  +    +
Sbjct: 566 IYFLEWYKENMQKLEDTEDTLCENPPLLRGVRL 598

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  215 bits (550), Expect = 7e-61
 Identities = 113/618 (18%), Positives = 200/618 (32%), Gaps = 104/618 (16%)

Query: 77  QELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQ 136
           +    +N  L   +P  L    S   L+ S N L  +I ++    L ++  L L+     
Sbjct: 15  KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIY 70

Query: 137 IPISLEPLFNHSRLKIFDAANNEIKAEITES-HSLTAPNFQLQALSLSSGYGDGVTFPKF 195
             I  +   +  RL       N +      +          L+ L               
Sbjct: 71  W-IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK----ALKHLFFIQ----------- 114

Query: 196 LYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLD 255
                                    L N   L  LYL ++ ++            L+ LD
Sbjct: 115 ---------------TGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159

Query: 256 VSNNNFQGHIPVEIGDILPSL--ISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGE 313
             NN    ++  E    L     +S N++ N + + I     +    Q L+    Q    
Sbjct: 160 FQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLV 217

Query: 314 IPEHLA-VSCVNLEFLALSNNNLKG--HMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKC 370
           I + L   +  +L      + + +             ++ S+ L+ ++       +    
Sbjct: 218 IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCF 277

Query: 371 SSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNN 430
           S L+ L L    LS ++P  L  L+ LK +++  N  E    +      SL  L I  N 
Sbjct: 278 SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336

Query: 431 ISGSLPS-CFHPL-SIEQVHLSKNMLHG-QLKRGTFFHCSSLVTLDLSYNRLNGSIPNWV 487
               L + C   L ++ ++ LS + +           + S L +L+LSYN          
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396

Query: 488 DGLSQLSHLILGHNNLEG-EVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNN 546
               QL  L L    L+  +       L+ L++L+LS++ L       FD          
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG--------- 447

Query: 547 SYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKL--- 603
                                                      L  L  L+L  N     
Sbjct: 448 -------------------------------------------LPALQHLNLQGNHFPKG 464

Query: 604 IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK 663
                  +  L R++ L LS  +L+ +    F++LK +  +DLS+N+L       L  LK
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524

Query: 664 TLAVFSVAYNNLSGEIPE 681
            +   ++A N++S  +P 
Sbjct: 525 GI-YLNLASNHISIILPS 541

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  209 bits (535), Expect = 8e-59
 Identities = 89/504 (17%), Positives = 164/504 (32%), Gaps = 52/504 (10%)

Query: 197 YHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDV 256
             +   +     ++ ++ E P  L  +      L    + L             L FLD+
Sbjct: 9   IEKEVNKTYNCENLGLN-EIPGTLPNS---TECLEFSFNVLPTIQNTTFSRLINLTFLDL 64

Query: 257 SNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPE 316
           +                  L +  ++ N L     ++      L+ L      ++     
Sbjct: 65  TRCQIYWIHEDTFQS-QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI 123

Query: 317 HLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGL 376
            L  +   LE L L +N++      + F    L+ L  + N +     + +S       L
Sbjct: 124 PLH-NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182

Query: 377 YL--NNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG--FCQLYSLQILDISDNNIS 432
            L  N N ++G I     +    + +          I  G     + SL +    D +  
Sbjct: 183 SLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241

Query: 433 GSLPSCFHP---LSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDG 489
              P+ F     +S+E ++L K+     +   TF   S L  LDL+   L+  +P+ + G
Sbjct: 242 DISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLS-ELPSGLVG 299

Query: 490 LSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPP-CFDN----TTLHESS 544
           LS L  L+L  N  E    +       L  L +  N     +   C +N      L  S 
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359

Query: 545 NNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI 604
           ++  +       L                              + LS L  L+LS N+ +
Sbjct: 360 DDIETSDCCNLQL------------------------------RNLSHLQSLNLSYNEPL 389

Query: 605 GHIPPQIGNLTRIQTLNLSHNNLTGLIP-STFSNLKHIESLDLSYNKLNGKIPHQLVELK 663
                      +++ L+L+   L      S F NL  ++ L+LS++ L+         L 
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449

Query: 664 TLAVFSVAYNNLSGEIPEWTAQFA 687
            L   ++  N+      + T    
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQ 473

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  155 bits (395), Expect = 3e-40
 Identities = 93/522 (17%), Positives = 157/522 (30%), Gaps = 76/522 (14%)

Query: 15  FPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLM 74
               + L  LD        N +   + +E M SL+  +     L  N    ++ G     
Sbjct: 149 GFPTEKLKVLDF------QNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA 202

Query: 75  HLQELYIDNNDLRGSLPWCLAN--MTSLRILDVSSNQLTGSISSS-PLVHLTSIEELMLS 131
             Q L          +   L N  + SL +             +    +   S+E + L 
Sbjct: 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262

Query: 132 NNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVT 191
            ++F   IS       S L+  D     +                               
Sbjct: 263 KHYFFN-ISSNTFHCFSGLQELDLTATHLS-----------------------------E 292

Query: 192 FPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWL 251
            P  L     L+ + LS  N           N   L  L +                   
Sbjct: 293 LPSGLVGLSTLKKLVLSA-NKFENLCQISASNFPSLTHLSI------------------- 332

Query: 252 RFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSS--IPSSFGNMNFLQILDLSNNQ 309
                  N  +  +     + L +L   ++S + +++S        N++ LQ L+LS N+
Sbjct: 333 -----KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387

Query: 310 LTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNF-NLTNLRSLQLEGNHLEGEIPQSLS 368
                 E     C  LE L L+   LK       F NL  L+ L L  + L+    Q   
Sbjct: 388 PLSLKTEAFK-ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446

Query: 369 KCSSLEGLYLNNNSLSGKI---PRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILD 425
              +L+ L L  N            L  L  L+ +++    L       F  L  +  +D
Sbjct: 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506

Query: 426 ISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPN 485
           +S N ++ S       L    ++L+ N +   +        S   T++L  N L+ +  N
Sbjct: 507 LSHNRLTSSSIEALSHLKGIYLNLASNHISI-ILPSLLPILSQQRTINLRQNPLDCTCSN 565

Query: 486 WVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNL 527
               +  L         LE            L+ + LS+  L
Sbjct: 566 ----IYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  205 bits (524), Expect = 2e-57
 Identities = 109/620 (17%), Positives = 201/620 (32%), Gaps = 112/620 (18%)

Query: 75  HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH 134
             + + +  N L+    +  +N + L+ LD+S  ++      +    L  +  L+L+ N 
Sbjct: 33  STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA-WHGLHHLSNLILTGNP 91

Query: 135 FQIPISLEPLFNHSRLKIFDAANNEIKAEITES-HSLTAPNFQLQALSLSSGYGDGVTFP 193
            Q   S       + L+   A   ++ +  +     L      L+ L+++          
Sbjct: 92  IQS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLI----TLKKLNVA---------- 136

Query: 194 KFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTG----PFRLPIHSHR 249
                        +    +   F N      T L  + L  + +        +    + +
Sbjct: 137 ----------HNFIHSCKLPAYFSNL-----TNLVHVDLSYNYIQTITVNDLQFLRENPQ 181

Query: 250 WLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPS-SFGNMNFLQILDLSNN 308
               LD+S N     I  +       L    +  N   S+I      N+  L +  L   
Sbjct: 182 VNLSLDMSLNPID-FIQDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239

Query: 309 QLTGEI------PEHLAVSC-VNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEG 361
           +   E       P  +   C V ++   L+  N       +   L N+ ++ L G  ++ 
Sbjct: 240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY 299

Query: 362 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSL 421
              + + K    + L +    L         +L  LK + +  N            L SL
Sbjct: 300 --LEDVPKHFKWQSLSIIRCQLKQFPT---LDLPFLKSLTLTMNKGSISFK--KVALPSL 352

Query: 422 QILDISDNNISGSLPSCFHPL---SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNR 478
             LD+S N +S S    +  L   S+  + LS N     +    F     L  LD  ++ 
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI--IMSANFMGLEELQHLDFQHST 410

Query: 479 LNGSIPNWV-DGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPI-PPCFD 536
           L           L +L +L + + N + +       L  L  L ++ N+         F 
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470

Query: 537 NTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGL 596
           N                                                     + L+ L
Sbjct: 471 N----------------------------------------------------TTNLTFL 478

Query: 597 DLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP 656
           DLS  +L          L R+Q LN+SHNNL  L  S ++ L  + +LD S+N++     
Sbjct: 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

Query: 657 HQLVELKTLAVFSVAYNNLS 676
                 K+LA F++  N+++
Sbjct: 539 ILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  204 bits (522), Expect = 5e-57
 Identities = 103/627 (16%), Positives = 186/627 (29%), Gaps = 106/627 (16%)

Query: 39  QIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMT 98
           ++  +   S K + +S + L      +      +   LQ L +   ++          + 
Sbjct: 25  KVPDDIPSSTKNIDLSFNPL----KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLH 80

Query: 99  SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANN 158
            L  L ++ N +  S S      LTS+E L+          S  P+     LK  + A+N
Sbjct: 81  HLSNLILTGNPIQ-SFSPGSFSGLTSLENLVAVETKLASLES-FPIGQLITLKKLNVAHN 138

Query: 159 EIKAEITESHSLTAPNFQLQALSLSS---GYGDGVTFPKFLYHQHDLEDVRLSHVNMDGE 215
            I +    ++     N  L  + LS                 +      + +S   +D  
Sbjct: 139 FIHSCKLPAYFSNLTN--LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFI 196

Query: 216 FPNWLLENNTKLRQLYL-VNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILP 274
                     KL +L L  N + +   +  + +   L    +    F+    +EI +   
Sbjct: 197 QDQAF--QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254

Query: 275 -------SLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEF 327
                  ++  F ++     S     F  +  +  + L+   +   + +         + 
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDV--PKHFKWQS 311

Query: 328 LALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKI 387
           L++    LK        +L  L+SL L  N     I        SL  L L+ N+LS   
Sbjct: 312 LSIIRCQLKQFPT---LDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSG 366

Query: 388 PRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPL-SIEQ 446
                +L                         SL+ LD+S N     + + F  L  ++ 
Sbjct: 367 CCSYSDLG----------------------TNSLRHLDLSFNGAI-IMSANFMGLEELQH 403

Query: 447 VHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGE 506
           +    + L    +   F     L+ LD+SY            GL+ L+ L +  N+ +  
Sbjct: 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463

Query: 507 VPVQ-LCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIP 565
                      L  LDLS   L       FD                             
Sbjct: 464 TLSNVFANTTNLTFLDLSKCQLEQISWGVFDT---------------------------- 495

Query: 566 AEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHN 625
                                   L  L  L++S N L+         L  + TL+ S N
Sbjct: 496 ------------------------LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531

Query: 626 NLTGLIPSTFSNLKHIESLDLSYNKLN 652
            +           K +   +L+ N + 
Sbjct: 532 RIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  203 bits (519), Expect = 1e-56
 Identities = 95/533 (17%), Positives = 184/533 (34%), Gaps = 45/533 (8%)

Query: 15  FPHFKSLDHLDMVFARTALNTSFLQIIRE----SMPSLKYLSMSDSTLGTNSSRILDQGL 70
           F +F  L  LD       L+   ++ I +     +  L  L ++ + +            
Sbjct: 52  FSNFSELQWLD-------LSRCEIETIEDKAWHGLHHLSNLILTGNPI----QSFSPGSF 100

Query: 71  CSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELML 130
             L  L+ L      L     + +  + +L+ L+V+ N +      +   +LT++  + L
Sbjct: 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160

Query: 131 SNNHFQ--IPISLEPLFN-HSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYG 187
           S N+ Q      L+ L          D + N     I           +L  L+L   + 
Sbjct: 161 SYNYIQTITVNDLQFLRENPQVNLSLDMSLN----PIDFIQDQAFQGIKLHELTLRGNFN 216

Query: 188 DGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNT-------KLRQLYLVNDSLTGP 240
                   L +   L   RL       E    + E +         + +  L   +    
Sbjct: 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD 276

Query: 241 FRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFL 300
             +  H    +  + ++  + +    +E         S +I    L    P    ++ FL
Sbjct: 277 DIVKFHCLANVSAMSLAGVSIKY---LEDVPKHFKWQSLSIIRCQL-KQFP--TLDLPFL 330

Query: 301 QILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLK--GHMFSRNFNLTNLRSLQLEGNH 358
           + L L+ N+ +    +   V+  +L +L LS N L   G     +    +LR L L  N 
Sbjct: 331 KSLTLTMNKGSISFKK---VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387

Query: 359 LEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW-LGNLTGLKHIIMPENHLEGPIPVGFCQ 417
               +  +      L+ L   +++L          +L  L ++ +   + +      F  
Sbjct: 388 AI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446

Query: 418 LYSLQILDISDNNISGSLPSCF--HPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLS 475
           L SL  L ++ N+   +  S    +  ++  + LSK  L   +  G F     L  L++S
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQLLNMS 505

Query: 476 YNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLH 528
           +N L     +  + L  LS L    N +E    +       L   +L+NN++ 
Sbjct: 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  152 bits (386), Expect = 6e-39
 Identities = 74/402 (18%), Positives = 140/402 (34%), Gaps = 51/402 (12%)

Query: 288 SSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKG---HMFSRNF 344
            S+      +  +      + +L+ ++P+ +     + + + LS N LK    + FS   
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS-KVPDDIPS---STKNIDLSFNPLKILKSYSFS--- 53

Query: 345 NLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPE 404
           N + L+ L L    +E    ++      L  L L  N +    P     LT L++++  E
Sbjct: 54  NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113

Query: 405 NHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFF 464
             L         QL +L+ L+++ N I                               F 
Sbjct: 114 TKLASLESFPIGQLITLKKLNVAHNFIHSCKLP-----------------------AYFS 150

Query: 465 HCSSLVTLDLSYNRLNGSIPNWVDGLSQLS----HLILGHNNLEGEVPVQLCELNQLQLL 520
           + ++LV +DLSYN +     N +  L +       L +  N ++  +  Q  +  +L  L
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHEL 209

Query: 521 DLSNNNLHGPIPP--CFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIH-ENFEFT 577
            L  N     I      +   LH         K      + +  ++     +  + F  T
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269

Query: 578 TKNIAYIYQG--KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTF 635
             N           L+ +S + L+   +       +    + Q+L++    L        
Sbjct: 270 YTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLDL 327

Query: 636 SNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSG 677
             LK    L L+ NK +  I  + V L +L+   ++ N LS 
Sbjct: 328 PFLKS---LTLTMNKGS--ISFKKVALPSLSYLDLSRNALSF 364

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  191 bits (487), Expect = 3e-51
 Identities = 131/725 (18%), Positives = 226/725 (31%), Gaps = 106/725 (14%)

Query: 61  NSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLV 120
                L Q    L   + L +  N +R         +  L++L++ S     +I      
Sbjct: 11  YRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR 70

Query: 121 HLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQAL 180
           +L ++  L L ++     +  +       L         +   + +          L  L
Sbjct: 71  NLPNLRILDLGSSKIYF-LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF-RNLKALTRL 128

Query: 181 SLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLEN--NTKLRQLYLVNDSLT 238
            LS      +         + L+ +  S  N         LE      L    L  +SL 
Sbjct: 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSS-NQIFLVCEHELEPLQGKTLSFFSLAANSLY 187

Query: 239 GPFRLPIHS------HRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPS 292
               +          +  L  LDVS N +             ++       NA+  S   
Sbjct: 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGW-------------TVDITGNFSNAISKSQAF 234

Query: 293 SFGNMNFLQILDLSNNQLTGEIPEHLAVSC-VNLEFLALSNNNLK---GHMFSRNFNLTN 348
           S    + +       + +        A     ++  L LS+  +      +F     L +
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE---TLKD 291

Query: 349 LRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLE 408
           L+ L L  N +     ++     +L+ L L+ N L          L  + +I + +NH+ 
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351

Query: 409 GPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSS 468
                 F  L  LQ LD+ DN ++    +     SI  + LS N L   L +       +
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDNALT----TIHFIPSIPDIFLSGNKLV-TLPKINL----T 402

Query: 469 LVTLDLSYNRLNG-SIPNWVDGLSQLSHLILGHNNLEGEVPVQLCE-LNQLQLLDLSNNN 526
              + LS NRL    I  ++  +  L  LIL  N        Q       L+ L L  N 
Sbjct: 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462

Query: 527 LHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQ 586
           L                                                           
Sbjct: 463 LQLAWETELCWDVFEG-------------------------------------------- 478

Query: 587 GKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLD 645
              LS L  L L+ N  +  +PP +  +LT ++ L+L+ N LT L  +      ++E LD
Sbjct: 479 ---LSHLQVLYLNHNY-LNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILD 532

Query: 646 LSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL 705
           +S N+L    P   V L       + +N    E      + +TF       N  + G P 
Sbjct: 533 ISRNQLLAPNPDVFVSLSV---LDITHNKFICEC-----ELSTFINWLNHTNVTIAGPPA 584

Query: 706 PI-CRSPATMSEASIGNER----DDNLIDIDSFFITFTTSYVVVIFGIVIVLYVNSYWRR 760
            I C  P + S  S+ +      D+  +     F  F    V +   ++ +L V  +   
Sbjct: 585 DIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGF 644

Query: 761 KWFYF 765
            +  +
Sbjct: 645 CFICY 649

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  189 bits (481), Expect = 2e-50
 Identities = 117/651 (17%), Positives = 224/651 (34%), Gaps = 74/651 (11%)

Query: 3   DCKVNGLVRGQGFPHFKSLDHLDMVFAR-TALNTSFLQIIRESMPSLKYLSMSDSTLGTN 61
             +   L   Q      + + L + F     +  S        +  L+ L +        
Sbjct: 10  FYRFCNLT--QVPQVLNTTERLLLSFNYIRTVTASSFP----FLEQLQLLELGSQYT--- 60

Query: 62  SSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT-GSISSSPLV 120
              I  +   +L +L+ L + ++ +    P     +  L  L +    L+   +      
Sbjct: 61  PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120

Query: 121 HLTSIEELMLSNNHFQIPISLEPLFNH-SRLKIFDAANNEIKAEITES-HSLTAPNFQLQ 178
           +L ++  L LS N  +  + L P F   + LK  D ++N+I          L      L 
Sbjct: 121 NLKALTRLDLSKNQIRS-LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT--LS 177

Query: 179 ALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLT 238
             SL++          +    +   ++ L  ++        +  N   +      +++++
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD--------VSGNGWTVDITGNFSNAIS 229

Query: 239 GPFRLPIHSHRWLRFLDVSNNNFQGHIPVEI--GDILPSLISFNISMNALDSSIPSSFGN 296
                 +     +       +N +         G    S+   ++S   + S     F  
Sbjct: 230 KSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET 288

Query: 297 MNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNF-NLTNLRSLQLE 355
           +  L++L+L+ N++  +I +       NL+ L LS N L   ++S NF  L  +  + L+
Sbjct: 289 LKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQ 346

Query: 356 GNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEG------ 409
            NH+     Q+      L+ L L +N+L+      +  +  +  I +  N L        
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLVTLPKINL 401

Query: 410 ---------------PIPVGFCQLYSLQILDISDNNISGSLPSCF--HPLSIEQVHLSKN 452
                           I     ++  LQIL ++ N  S            S+EQ+ L +N
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461

Query: 453 MLHG----QLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVP 508
           ML      +L    F   S L  L L++N LN   P     L+ L  L L  N L     
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH 521

Query: 509 VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSY----SLKPFETSLVMDSMMI 564
             L     L++LD+S N L  P P  F + ++ + ++N +     L  F   L   ++ I
Sbjct: 522 NDL--PANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTI 579

Query: 565 PAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLT 615
                               + G  L  LS       +++  +   +  + 
Sbjct: 580 A------GPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVC 624

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  168 bits (428), Expect = 1e-44
 Identities = 103/532 (19%), Positives = 171/532 (32%), Gaps = 66/532 (12%)

Query: 15  FPHFKSLDHLDMVFARTALNTSFLQIIRE----SMPSLKYLSMSDSTLGTNSSRILDQGL 70
           F  F  L  LD       L+   +Q I +    S+  L  L ++ + +      +     
Sbjct: 48  FFSFPELQVLD-------LSRCEIQTIEDGAYQSLSHLSTLILTGNPI----QSLALGAF 96

Query: 71  CSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELML 130
             L  LQ+L     +L     + + ++ +L+ L+V+ N +          +LT++E L L
Sbjct: 97  SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 131 SNNHFQ--IPISLEPLFNHSRLKIF-DAANNEIKAEITESHSLTAPNFQLQALSLSSGYG 187
           S+N  Q      L  L     L +  D + N     +           +L  L+L + + 
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN----PMNFIQPGAFKEIRLHKLTLRNNFD 212

Query: 188 DGVTFPKFLY-----HQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFR 242
                   +        H L      +     +F    LE    L         L     
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 243 LPIHSHRWLRFL---DVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNF 299
             I     L  +    + +   +             L   N                +  
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF------PTLKLKS 326

Query: 300 LQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNL--KGHMFSRNFNLTNLRSLQLEGN 357
           L+ L  ++N+      E   V   +LEFL LS N L  KG     +F  T+L+ L L  N
Sbjct: 327 LKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 358 HLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQ 417
            +   +  +      LE L   +++L       +                       F  
Sbjct: 384 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV-----------------------FLS 419

Query: 418 LYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSY 476
           L +L  LDIS  +   +    F+ L S+E + ++ N          F    +L  LDLS 
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 477 NRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLH 528
            +L    P   + LS L  L +  N L+         L  LQ + L  N   
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  166 bits (422), Expect = 7e-44
 Identities = 111/596 (18%), Positives = 203/596 (34%), Gaps = 109/596 (18%)

Query: 98  TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAAN 157
            S + LD+S N L   + S        ++ L LS    Q  I      + S L       
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTG 85

Query: 158 NEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFP 217
           N                  +Q+L+                    L+ +            
Sbjct: 86  N-----------------PIQSLA-----------LGAFSGLSSLQKLVAVE-TNLASLE 116

Query: 218 NWLLENNTKLRQLYLVNDSLT-GPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSL 276
           N+ + +   L++L + ++ +          +   L  LD+S+N  Q  I      +L  +
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQM 175

Query: 277 ----ISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLAL-- 330
               +S ++S+N ++   P +F  +  L  L L NN  +  + +        LE   L  
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234

Query: 331 ----SNNNLKGHMFSRNFNLTNLRSLQLEGNHLEG---EIPQSLSKCSSLEGLYLNNNSL 383
               +  NL+    S    L NL   +    +L+    +I    +  +++    L + ++
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

Query: 384 SGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLS 443
             ++  +  N  G +H+ +              +L SL+ L  + N    +  S     S
Sbjct: 295 E-RVKDFSYN-FGWQHLELVNCKFGQ---FPTLKLKSLKRLTFTSNKGG-NAFSEVDLPS 348

Query: 444 IEQVHLSKNMLHGQ-LKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNN 502
           +E + LS+N L  +     + F  +SL  LDLS+N +  ++ +   GL QL HL   H+N
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN 407

Query: 503 LEG-EVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDS 561
           L+          L  L  LD+S+ +        F+                         
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG------------------------ 443

Query: 562 MMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTL 620
                                       LS L  L ++ N    +  P I   L  +  L
Sbjct: 444 ----------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475

Query: 621 NLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLS 676
           +LS   L  L P+ F++L  ++ L+++ N+L          L +L    +  N   
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  154 bits (390), Expect = 1e-39
 Identities = 96/502 (19%), Positives = 164/502 (32%), Gaps = 63/502 (12%)

Query: 44  SMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRIL 103
           S P L+ L +S   +      I D    SL HL  L +  N ++       + ++SL+ L
Sbjct: 50  SFPELQVLDLSRCEI----QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105

Query: 104 DVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNH-SRLKIFDAANNEIKA 162
                 L  S+ + P+ HL +++EL +++N  Q    L   F++ + L+  D ++N+I+ 
Sbjct: 106 VAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ- 162

Query: 163 EITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLE 222
            I  +         L  LSL              + +  L  + L +           ++
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222

Query: 223 NNTKLRQLYLVNDSLTGPFRL---PIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISF 279
               L    LV         L      +   L  L +                       
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA----------------- 265

Query: 280 NISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHM 339
              ++     I   F  +  +    L +  +             +LE +           
Sbjct: 266 --YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF---- 319

Query: 340 FSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKH 399
                 L +L+ L    N        S     SLE L L+ N LS K             
Sbjct: 320 --PTLKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFK------------- 362

Query: 400 IIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHGQL 458
                    G          SL+ LD+S N +  ++ S F  L  +E +    + L    
Sbjct: 363 ---------GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMS 412

Query: 459 KRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQ-LCELNQL 517
           +   F    +L+ LD+S+     +     +GLS L  L +  N+ +         EL  L
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 518 QLLDLSNNNLHGPIPPCFDNTT 539
             LDLS   L    P  F++ +
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLS 494

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  141 bits (358), Expect = 1e-35
 Identities = 79/406 (19%), Positives = 144/406 (35%), Gaps = 42/406 (10%)

Query: 304 DLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEI 363
                    +IP++L     + + L LS N L+       F+   L+ L L    ++   
Sbjct: 13  QCMELNFY-KIPDNLPF---STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 364 PQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQI 423
             +    S L  L L  N +          L+ L+ ++  E +L          L +L+ 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 424 LDISDNNI-SGSLPSCFHPL-SIEQVHLSKNMLHGQLKRGTFFHCSSL----VTLDLSYN 477
           L+++ N I S  LP  F  L ++E + LS N +   +          +    ++LDLS N
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 478 RLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCE-LNQLQLLDL------SNNNLHGP 530
            +N  I        +L  L L +N     V     + L  L++  L      +  NL   
Sbjct: 188 PMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 531 IPPCFD---NTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQG 587
                +   N T+ E           +   + + +   +   +        K+ +Y +  
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGW 306

Query: 588 KVLSL---------------LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT--GL 630
           + L L               L  L  + NK          +L  ++ L+LS N L+  G 
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGC 364

Query: 631 IPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLS 676
              +      ++ LDLS+N +   +    + L+ L      ++NL 
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 409

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  131 bits (331), Expect = 3e-32
 Identities = 83/460 (18%), Positives = 165/460 (35%), Gaps = 56/460 (12%)

Query: 15  FPHFKSLDHLDMVFARTALNTSFLQIIRE----SMPSLKYLSMSDSTLGTNSSRILDQGL 70
           F    SL  L           + L  +       + +LK L+++ + +    S  L +  
Sbjct: 96  FSGLSSLQKLV-------AVETNLASLENFPIGHLKTLKELNVAHNLI---QSFKLPEYF 145

Query: 71  CSLMHLQELYIDNNDLRGSLPWCLANMTSLRI----LDVSSNQLTGSISSSPLVHLTSIE 126
            +L +L+ L + +N ++      L  +  + +    LD+S N +   I       +  + 
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI-RLH 203

Query: 127 ELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIK-----AEITESHSLTAPNFQLQALS 181
           +L L NN   + +    +   + L++      E +      +  +S      N  ++   
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 182 LSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPF 241
           L+                 ++    L  V ++          N   + L LVN       
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFGQFP 320

Query: 242 RLPIHSHRW-------------------LRFLDVSNNNFQG-HIPVEIGDILPSLISFNI 281
            L + S +                    L FLD+S N         +      SL   ++
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 282 SMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKG---H 338
           S N +  ++ S+F  +  L+ LD  ++ L       + +S  NL +L +S+ + +     
Sbjct: 381 SFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 339 MFSRNFNLTNLRSLQLEGNHLEGEIPQ-SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGL 397
           +F+    L++L  L++ GN  +        ++  +L  L L+   L    P    +L+ L
Sbjct: 440 IFN---GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496

Query: 398 KHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPS 437
           + + M  N L+      F +L SLQ + +  N    S P 
Sbjct: 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  105 bits (265), Expect = 7e-24
 Identities = 67/401 (16%), Positives = 138/401 (34%), Gaps = 37/401 (9%)

Query: 11  RGQGFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTL--GTNSSRILDQ 68
             + F +  +L+HLD+       +     I    +  L  + + + +L    N    +  
Sbjct: 141 LPEYFSNLTNLEHLDLS------SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 69  GLCSLMHLQELYIDNNDLRGSLPW-CLANMTSLRILDVSSNQLTG-----SISSSPLVHL 122
           G    + L +L + NN    ++   C+  +  L +  +   +            S L  L
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 123 TS--IEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQAL 180
            +  IEE  L+   + +   ++     + +  F   +  I+     S++    + +L   
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 314

Query: 181 SLSSGYGDGVTFPKFLYHQH-------------DLEDVRLSHVNMDG-EFPNWLLENNTK 226
                    +   K L                  LE + LS   +      +      T 
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 227 LRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNAL 286
           L+ L L  + +             L  LD  ++N +      +   L +LI  +IS    
Sbjct: 375 LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 287 DSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKG---HMFSRN 343
             +    F  ++ L++L ++ N         +     NL FL LS   L+      F+  
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN-- 491

Query: 344 FNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLS 384
            +L++L+ L +  N L+        + +SL+ ++L+ N   
Sbjct: 492 -SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 19/86 (22%), Positives = 32/86 (37%)

Query: 596 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 655
           LDLS N L         +   +Q L+LS   +  +    + +L H+ +L L+ N +    
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92

Query: 656 PHQLVELKTLAVFSVAYNNLSGEIPE 681
                 L +L        NL+     
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENF 118

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 3/86 (3%)

Query: 597 DLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP 656
                     IP  +      + L+LS N L  L   +F +   ++ LDLS  ++     
Sbjct: 13  QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 657 HQLVELKTLAVFSVAYNNLSGEIPEW 682
                L  L+   +  N +       
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGA 95

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  166 bits (423), Expect = 4e-44
 Identities = 94/566 (16%), Positives = 174/566 (30%), Gaps = 73/566 (12%)

Query: 99  SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANN 158
           +  + D  S   T    S P     +++ L LS N     I    L   + L++    ++
Sbjct: 6   ASGVCDGRSRSFT----SIPSGLTAAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSS 60

Query: 159 EIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPN 218
                            ++  +                Y    LE + LS  N      +
Sbjct: 61  -----------------RINTIE-----------GDAFYSLGSLEHLDLSD-NHLSSLSS 91

Query: 219 WLLENNTKLRQLYLVNDSLTG-PFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLI 277
                 + L+ L L+ +            +   L+ L + N      I       L SL 
Sbjct: 92  SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN 151

Query: 278 SFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKG 337
              I   +L +    S  ++  +  L L  ++    + E  A    ++ +L L + NL  
Sbjct: 152 ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLAR 210

Query: 338 HMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGL 397
             FS          ++           +S ++   L    L  + +         + T  
Sbjct: 211 FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE------FDDCTLN 264

Query: 398 KHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHG 456
                  +  +    +G  +  +++ L I    +   L + +  L  ++++ +  + +  
Sbjct: 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF- 323

Query: 457 QLKRGTFFHCSSLVTLDLSYNRLNGSI---PNWVDGLSQLSHLILGHNNLE--GEVPVQL 511
            +      H  SL  LDLS N +                L  L+L  N+L    +    L
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383

Query: 512 CELNQLQLLDLSNNNLHGPIPPCFDNTTLHE---SSNN--SYSLKPFETSLVMDSMMIPA 566
             L  L  LD+S N  H     C     +     SS           +T  V+D      
Sbjct: 384 LTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLD------ 437

Query: 567 EKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN 626
              +  N      N+        L  L  L +S NKL   +P        +  + +S N 
Sbjct: 438 ---VSNN------NLDSFSLF--LPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQ 484

Query: 627 LTGLIPSTFSNLKHIESLDLSYNKLN 652
           L  +    F  L  ++ + L  N  +
Sbjct: 485 LKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  159 bits (403), Expect = 1e-41
 Identities = 83/465 (17%), Positives = 171/465 (36%), Gaps = 36/465 (7%)

Query: 242 RLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQ 301
            +P      ++ LD+S N    +I         +L    +  + +++    +F ++  L+
Sbjct: 19  SIPSGLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLE 77

Query: 302 ILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNF-NLTNLRSLQLEGNHLE 360
            LDLS+N L+  +         +L++L L  N  +    +  F NLTNL++L++      
Sbjct: 78  HLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136

Query: 361 GEIP-QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLY 419
            EI     +  +SL  L +   SL     + L ++  + H+ +  +     + +    L 
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS 196

Query: 420 SLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTF----------FHCSSL 469
           S++ L++ D N++    S      +             L   +F             S +
Sbjct: 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256

Query: 470 VTLDLSYNRLNGSIPNWVDGLS--------QLSHLILGHNNLEGEVPVQLCELNQLQLLD 521
              D + N L    P+  D +S         +  L +    L  ++      L +++ + 
Sbjct: 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316

Query: 522 LSNNNLHGPIPPCFDN-TTLHE--SSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTT 578
           + N+ +         +  +L     S N    +  + S    +        + +N   + 
Sbjct: 317 VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376

Query: 579 KNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNL 638
           +    I     L  L+ LD+S N     +P       +++ LNLS   +  +       L
Sbjct: 377 QKTGEILLT--LKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTL 433

Query: 639 KHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWT 683
           +    LD+S N L+      L  L+ L    ++ N L   +P+ +
Sbjct: 434 EV---LDVSNNNLD-SFSLFLPRLQEL---YISRNKLK-TLPDAS 470

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  149 bits (379), Expect = 2e-38
 Identities = 82/481 (17%), Positives = 174/481 (36%), Gaps = 40/481 (8%)

Query: 44  SMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRIL 103
           +  +L+ L +  S +    + I      SL  L+ L + +N L          ++SL+ L
Sbjct: 48  ACANLQVLILKSSRI----NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103

Query: 104 DVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAE 163
           ++  N       +S   +LT+++ L + N      I        + L   +     ++  
Sbjct: 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-- 161

Query: 164 ITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWL--L 221
                        +  L+L            F      +  + L   N+     + L   
Sbjct: 162 -NYQSQSLKSIRDIHHLTLHLS-ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVD 219

Query: 222 ENNTKLRQLYLVNDSLTGP-------FRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDI-- 272
           E ++ +++L      LT             I     + F D + N      P E   +  
Sbjct: 220 EVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE 279

Query: 273 -----LPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEF 327
                  ++   +I    L   + + +  +  ++ + + N+++   +P   +    +LEF
Sbjct: 280 LGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEF 338

Query: 328 LALSNNNLK---GHMFSRNFNLTNLRSLQLEGNHLE--GEIPQSLSKCSSLEGLYLNNNS 382
           L LS N +        +      +L++L L  NHL    +  + L    +L  L ++ N+
Sbjct: 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398

Query: 383 LSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPL 442
               +P        ++ + +    +     V  C   +L++LD+S+NN+  S        
Sbjct: 399 FH-PMPDSCQWPEKMRFLNLSSTGIRV---VKTCIPQTLEVLDVSNNNLD-SFSL--FLP 451

Query: 443 SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNN 502
            ++++++S+N L   L   + F    L+ + +S N+L        D L+ L  + L  N 
Sbjct: 452 RLQELYISRNKLK-TLPDASLF--PVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508

Query: 503 L 503
            
Sbjct: 509 W 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  149 bits (377), Expect = 4e-38
 Identities = 67/386 (17%), Positives = 132/386 (34%), Gaps = 27/386 (6%)

Query: 300 LQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKG---HMFSRNFNLTNLRSLQLEG 356
             + D  +   T  IP  L      ++ L LS N +               NL+ L L+ 
Sbjct: 7   SGVCDGRSRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLR---ACANLQVLILKS 59

Query: 357 NHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHL-EGPIPVGF 415
           + +      +     SLE L L++N LS     W G L+ LK++ +  N      +   F
Sbjct: 60  SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 416 CQLYSLQILDISDNNISGSLP-SCFHPL-SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLD 473
             L +LQ L I +      +    F  L S+ ++ +    L    +  +      +  L 
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLT 178

Query: 474 LSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPP 533
           L  +     +  + D LS + +L L   NL       L        +             
Sbjct: 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG------ 232

Query: 534 CFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLL 593
              +    ES N    L  +   L            + +     +  ++ + + + +++ 
Sbjct: 233 ---SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI- 288

Query: 594 SGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG 653
             L +    L   +      L +++ + + ++ +  +  S   +LK +E LDLS N +  
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE 348

Query: 654 KIPHQLVE---LKTLAVFSVAYNNLS 676
           +            +L    ++ N+L 
Sbjct: 349 EYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 71.3 bits (175), Expect = 5e-13
 Identities = 36/217 (16%), Positives = 66/217 (30%), Gaps = 41/217 (18%)

Query: 466 CSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNN 525
           C +    D        SIP+ +   + +  L L  N +       L     LQ+L L ++
Sbjct: 4   CDASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60

Query: 526 NLHGPIPPCFDN----TTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNI 581
            ++      F +      L  S N+  SL                       F   +   
Sbjct: 61  RINTIEGDAFYSLGSLEHLDLSDNHLSSLSS-------------------SWFGPLSS-- 99

Query: 582 AYIYQGKVLSLLSGLDLSCNKLIG-HIPPQIGNLTRIQTLNLSHNNLTGLIP-STFSNLK 639
                      L  L+L  N      +     NLT +QTL + +      I    F+ L 
Sbjct: 100 -----------LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148

Query: 640 HIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLS 676
            +  L++    L       L  ++ +   ++  +  +
Sbjct: 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  155 bits (395), Expect = 5e-42
 Identities = 74/420 (17%), Positives = 145/420 (34%), Gaps = 89/420 (21%)

Query: 265 IPVEIGDI-----LPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLA 319
           +P  I  I     L   I   +   ++   +      +  +  L ++  ++   I     
Sbjct: 8   LPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQG--I 62

Query: 320 VSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLN 379
               NLE+L L+ N +     S   NL  L +L +  N +      +L   ++L  LYLN
Sbjct: 63  EYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLN 118

Query: 380 NNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCF 439
            +++S   P  L NLT +  + +  NH    +      +  L  L ++++ +    P   
Sbjct: 119 EDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--- 172

Query: 440 HPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILG 499
                                    + + L +L L+YN++    P  +  L+ L +    
Sbjct: 173 -----------------------IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAY 207

Query: 500 HNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE---SSNNSYSLKPFETS 556
            N +    P  +  + +L  L + NN +   + P  + + L      +N    +   +  
Sbjct: 208 VNQITDITP--VANMTRLNSLKIGNNKITD-LSPLANLSQLTWLEIGTNQISDINAVKD- 263

Query: 557 LVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTR 616
                                            L+ L  L++  N+ I  I   + NL++
Sbjct: 264 ---------------------------------LTKLKMLNVGSNQ-ISDISV-LNNLSQ 288

Query: 617 IQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLS 676
           + +L L++N L          L ++ +L LS N +    P  L  L  +     A   + 
Sbjct: 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  146 bits (370), Expect = 1e-38
 Identities = 71/385 (18%), Positives = 136/385 (35%), Gaps = 62/385 (16%)

Query: 300 LQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHL 359
              L      +    P+             L   ++          L ++  L + G  +
Sbjct: 2   AATLATLPAPINQIFPDA---DLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKV 56

Query: 360 EGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLY 419
                Q +   ++LE L LN N ++   P  L NL  L ++ +  N +          L 
Sbjct: 57  AS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA--LQNLT 110

Query: 420 SLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRL 479
           +L+ L ++++NIS   P       +  ++L  N     L      + + L  L ++ +++
Sbjct: 111 NLRELYLNEDNISDISPLANLT-KMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKV 167

Query: 480 NGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDN-- 537
               P  +  L+ L  L L +N +E   P  L  L  L       N +    P    N  
Sbjct: 168 KDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMT 221

Query: 538 --TTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSG 595
              +L   +N    L P                                     LS L+ 
Sbjct: 222 RLNSLKIGNNKITDLSPLAN----------------------------------LSQLTW 247

Query: 596 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 655
           L++  N++       + +LT+++ LN+  N ++ +  S  +NL  + SL L+ N+L  + 
Sbjct: 248 LEIGTNQISD--INAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNED 303

Query: 656 PHQLVELKTLAVFSVAYNNLSGEIP 680
              +  L  L    ++ N+++   P
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  138 bits (351), Expect = 4e-36
 Identities = 84/431 (19%), Positives = 150/431 (34%), Gaps = 89/431 (20%)

Query: 98  TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAAN 157
            +L  L    NQ+       P   L      +L        ++ E L     +     A 
Sbjct: 3   ATLATLPAPINQI------FPDADLAEGIRAVLQKASVTDVVTQEEL---ESITKLVVAG 53

Query: 158 NEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFP 217
            ++   I     LT                             +LE + L+   +    P
Sbjct: 54  EKVA-SIQGIEYLT-----------------------------NLEYLNLNGNQITDISP 83

Query: 218 NWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLI 277
              L N  KL  LY+  + +T      + +   LR L ++ +N     P+     L  + 
Sbjct: 84  ---LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISPL---ANLTKMY 135

Query: 278 SFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIP-EHLAVSCVNLEFLALSNNNLK 336
           S N+  N    S  S   NM  L  L ++ +++    P  +L     +L  L+L+ N ++
Sbjct: 136 SLNLGANHN-LSDLSPLSNMTGLNYLTVTESKVKDVTPIANL----TDLYSLSLNYNQIE 190

Query: 337 GHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTG 396
               S   +LT+L       N +    P  ++  + L  L + NN ++   P  L NL+ 
Sbjct: 191 D--ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQ 244

Query: 397 LKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHG 456
           L  + +  N +          L  L++L++  N IS  +                     
Sbjct: 245 LTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQIS-DISV------------------- 282

Query: 457 QLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQ 516
                   + S L +L L+ N+L       + GL+ L+ L L  N++    P  L  L++
Sbjct: 283 ------LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSK 334

Query: 517 LQLLDLSNNNL 527
           +   D +N  +
Sbjct: 335 MDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  131 bits (333), Expect = 1e-33
 Identities = 66/322 (20%), Positives = 124/322 (38%), Gaps = 24/322 (7%)

Query: 221 LENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFN 280
            E    + +L +  + +       I     L +L+++ N      P+     L  L +  
Sbjct: 40  QEELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDISPLSN---LVKLTNLY 94

Query: 281 ISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMF 340
           I  N +  +  S+  N+  L+ L L+ + ++   P     +   +  L L  N+    + 
Sbjct: 95  IGTNKI--TDISALQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDL- 148

Query: 341 SRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHI 400
           S   N+T L  L +  + ++   P  ++  + L  L LN N +    P  L +LT L + 
Sbjct: 149 SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYF 204

Query: 401 IMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKR 460
               N +    P     +  L  L I +N I+   P       +  + +  N +      
Sbjct: 205 TAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLS-QLTWLEIGTNQISDI--- 258

Query: 461 GTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLL 520
                 + L  L++  N+++  I   ++ LSQL+ L L +N L  E    +  L  L  L
Sbjct: 259 NAVKDLTKLKMLNVGSNQIS-DISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316

Query: 521 DLSNNNLHGPIPPCFDNTTLHE 542
            LS N++   I P    + +  
Sbjct: 317 FLSQNHITD-IRPLASLSKMDS 337

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  125 bits (317), Expect = 1e-31
 Identities = 71/382 (18%), Positives = 146/382 (38%), Gaps = 42/382 (10%)

Query: 31  TALNTSFLQIIR----ESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDL 86
             L T    I +      +       +  +++    +         L  + +L +    +
Sbjct: 3   ATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT------QEELESITKLVVAGEKV 56

Query: 87  RGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFN 146
             S+   +  +T+L  L+++ NQ+T     SPL +L  +  L +  N      +L+ L N
Sbjct: 57  A-SIQ-GIEYLTNLEYLNLNGNQIT---DISPLSNLVKLTNLYIGTNKITDISALQNLTN 111

Query: 147 HSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVR 206
              L+      + I  +I+   +LT    ++ +L+L + +   ++    L +   L  + 
Sbjct: 112 ---LRELYLNEDNIS-DISPLANLT----KMYSLNLGANHN--LSDLSPLSNMTGLNYLT 161

Query: 207 LSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIP 266
           ++  +   +     + N T L  L L  + +      P+ S   L +     N      P
Sbjct: 162 VTE-SKVKDVTP--IANLTDLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQITDITP 216

Query: 267 VEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLE 326
           V     +  L S  I  N +    P    N++ L  L++  NQ++      +      L+
Sbjct: 217 VAN---MTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVK-DLTKLK 268

Query: 327 FLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGK 386
            L + +N +     S   NL+ L SL L  N L  E  + +   ++L  L+L+ N ++  
Sbjct: 269 MLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326

Query: 387 IPRWLGNLTGLKHIIMPENHLE 408
            P  L +L+ +         ++
Sbjct: 327 RP--LASLSKMDSADFANQVIK 346

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  155 bits (393), Expect = 1e-40
 Identities = 103/447 (23%), Positives = 167/447 (37%), Gaps = 67/447 (14%)

Query: 221 LENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFN 280
                +  +  L   ++T    +       +  L       +    VE    L +L   N
Sbjct: 20  DTALAEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGIKSIDGVEY---LNNLTQIN 74

Query: 281 ISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMF 340
            S N L    P    N+  L  + ++NNQ+    P     +  NL  L L NN +     
Sbjct: 75  FSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITD--I 127

Query: 341 SRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHI 400
               NLTNL  L+L  N +      +LS  +SL+ L   N  ++   P  L NLT L+ +
Sbjct: 128 DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQ-VTDLKP--LANLTTLERL 182

Query: 401 IMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKR 460
            +  N +         +L +L+ L  ++N IS  +       +++++ L+ N L      
Sbjct: 183 DISSNKVSDISV--LAKLTNLESLIATNNQIS-DITPLGILTNLDELSLNGNQLK---DI 236

Query: 461 GTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLL 520
           GT    ++L  LDL+ N+++   P  + GL++L+ L LG N +    P  L  L  L  L
Sbjct: 237 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNL 292

Query: 521 DLSNNNLHG--PIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTT 578
           +L+ N L    PI    + T L    NN   + P  +                       
Sbjct: 293 ELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSS----------------------- 329

Query: 579 KNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNL 638
                      L+ L  L    NK+       + NLT I  L+  HN ++ L P   +NL
Sbjct: 330 -----------LTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANL 374

Query: 639 KHIESLDLSYNKLNGKIPHQLVELKTL 665
             I  L L+         +    +   
Sbjct: 375 TRITQLGLNDQAWTNAPVNYKANVSIP 401

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  152 bits (386), Expect = 8e-40
 Identities = 96/459 (20%), Positives = 171/459 (37%), Gaps = 44/459 (9%)

Query: 69  GLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 128
              +L    +  +   ++  ++     ++  +  L      +    S   + +L ++ ++
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQI 73

Query: 129 MLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGD 188
             SNN       + PL N ++L      NN+I  +IT   +LT     L  L+L     +
Sbjct: 74  NFSNNQLT---DITPLKNLTKLVDILMNNNQIA-DITPLANLT----NLTGLTLF---NN 122

Query: 189 GVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSH 248
            +T    L +  +L  + LS   +        L   T L+QL   N         P+ + 
Sbjct: 123 QITDIDPLKNLTNLNRLELSSNTISDISA---LSGLTSLQQLSFGNQVTDLK---PLANL 176

Query: 249 RWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNN 308
             L  LD+S+N         +   L +L S   + N +    P   G +  L  L L+ N
Sbjct: 177 TTLERLDISSNKVSD--ISVLAK-LTNLESLIATNNQISDITP--LGILTNLDELSLNGN 231

Query: 309 QLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLS 368
           QL       LA S  NL  L L+NN +     +    LT L  L+L  N +    P  L+
Sbjct: 232 QLKD--IGTLA-SLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP--LA 284

Query: 369 KCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISD 428
             ++L  L LN N L    P  + NL  L ++ +  N++    P     L  LQ L   +
Sbjct: 285 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYN 340

Query: 429 NNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVD 488
           N +S  + S  +  +I  +    N +          + + +  L L+      +  N+  
Sbjct: 341 NKVS-DVSSLANLTNINWLSAGHNQISDL---TPLANLTRITQLGLNDQAWTNAPVNYKA 396

Query: 489 GLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNL 527
            +S  + +      L    P  + +       D++ N  
Sbjct: 397 NVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNLP 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  145 bits (369), Expect = 1e-37
 Identities = 91/411 (22%), Positives = 155/411 (37%), Gaps = 47/411 (11%)

Query: 275 SLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNN 334
            L S  I+ +   + I  +   +       L    +T  + +        +  L      
Sbjct: 2   PLGSATITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLG 57

Query: 335 LKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNL 394
           +K         L NL  +    N L    P  L   + L  + +NNN ++   P  L NL
Sbjct: 58  IKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANL 111

Query: 395 TGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNML 454
           T L  + +  N +    P     L +L  L++S N IS  + +     S++Q+     + 
Sbjct: 112 TNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFGNQVT 168

Query: 455 HGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCEL 514
             +       + ++L  LD+S N++  S  + +  L+ L  LI  +N +    P  L  L
Sbjct: 169 DLK----PLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGIL 220

Query: 515 NQLQLLDLSNNNLHGPIPPCFDNTTLHE---SSNNSYSLKPFE--TSLVMDSMMIPAEKQ 569
             L  L L+ N L   I      T L +   ++N   +L P    T L            
Sbjct: 221 TNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLAPLSGLTKL------------ 267

Query: 570 IHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTG 629
                +     I+ I     L+ L+ L+L+ N+L    P  I NL  +  L L  NN++ 
Sbjct: 268 --TELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323

Query: 630 LIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIP 680
           + P   S+L  ++ L    NK++      L  L  +   S  +N +S   P
Sbjct: 324 ISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  144 bits (365), Expect = 4e-37
 Identities = 93/452 (20%), Positives = 169/452 (37%), Gaps = 43/452 (9%)

Query: 99  SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANN 158
            L    ++ +     I       L    + +L   +    +S   L    ++    A   
Sbjct: 2   PLGSATITQDTPINQIF--TDTALAEKMKTVLGKTNVTDTVSQTDL---DQVTTLQADRL 56

Query: 159 EIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPN 218
            IK  I     L      L  ++ S    + +T    L +   L D+ +++ N   +   
Sbjct: 57  GIK-SIDGVEYLN----NLTQINFS---NNQLTDITPLKNLTKLVDILMNN-NQIADITP 107

Query: 219 WLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLIS 278
             L N T L  L L N+ +T     P+ +   L  L++S+N       +     L SL  
Sbjct: 108 --LANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISALS---GLTSLQQ 160

Query: 279 FNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGH 338
            +      D        N+  L+ LD+S+N+++      LA    NLE L  +NN +   
Sbjct: 161 LSFGNQVTD---LKPLANLTTLERLDISSNKVSD--ISVLA-KLTNLESLIATNNQISD- 213

Query: 339 MFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLK 398
             +    LTNL  L L GN L+     +L+  ++L  L L NN +S   P  L  LT L 
Sbjct: 214 -ITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLT 268

Query: 399 HIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQL 458
            + +  N +    P     L +L  L++++N +   +    +  ++  + L  N +    
Sbjct: 269 ELKLGANQISNISP--LAGLTALTNLELNENQLE-DISPISNLKNLTYLTLYFNNISDI- 324

Query: 459 KRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQ 518
                   + L  L    N+++    + +  L+ ++ L  GHN +    P  L  L ++ 
Sbjct: 325 --SPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRIT 378

Query: 519 LLDLSNNNLHGPIPPCFDNTTLHESSNNSYSL 550
            L L++            N ++  +  N    
Sbjct: 379 QLGLNDQAWTNAPVNYKANVSIPNTVKNVTGA 410

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  125 bits (315), Expect = 1e-30
 Identities = 88/390 (22%), Positives = 160/390 (41%), Gaps = 42/390 (10%)

Query: 43  ESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRI 102
           +++  L  + M+++ +   +       L +L +L  L + NN +    P  L N+T+L  
Sbjct: 87  KNLTKLVDILMNNNQIADIT------PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNR 138

Query: 103 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKA 162
           L++SSN ++     S L  LTS+++L   N        L+PL N + L+  D ++N++  
Sbjct: 139 LELSSNTIS---DISALSGLTSLQQLSFGNQV----TDLKPLANLTTLERLDISSNKVS- 190

Query: 163 EITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLE 222
           +I+    LT     L++L  ++     +T    L    +L+++ L+  N   +     L 
Sbjct: 191 DISVLAKLT----NLESLIATNNQISDITPLGIL---TNLDELSLNG-NQLKDIGT--LA 240

Query: 223 NNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNIS 282
           + T L  L L N+ ++     P+     L  L +  N      P+     L +L +  ++
Sbjct: 241 SLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNISPLAG---LTALTNLELN 295

Query: 283 MNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSR 342
            N L+   P    N+  L  L L  N ++   P     S   L+ L   NN +     S 
Sbjct: 296 ENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS---SLTKLQRLFFYNNKVSD--VSS 348

Query: 343 NFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIM 402
             NLTN+  L    N +    P  L+  + +  L LN+ + +     +  N++    +  
Sbjct: 349 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKN 406

Query: 403 PENHLEGPIPVGFCQLYSLQILDISDNNIS 432
               L  P         S    DI+ N  S
Sbjct: 407 VTGALIAPAT--ISDGGSYTEPDITWNLPS 434

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  152 bits (386), Expect = 1e-39
 Identities = 73/291 (25%), Positives = 130/291 (44%), Gaps = 10/291 (3%)

Query: 242 RLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQ 301
            +P       R LD+  N  +  +  +     P L    ++ N + +  P +F N+  L+
Sbjct: 25  AVPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83

Query: 302 ILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLK---GHMFSRNFNLTNLRSLQLEGNH 358
            L L +N+L   IP  +     NL  L +S N +     +MF    +L NL+SL++  N 
Sbjct: 84  TLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQ---DLYNLKSLEVGDND 139

Query: 359 LEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQL 418
           L     ++ S  +SLE L L   +L+      L +L GL  + +   ++       F +L
Sbjct: 140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL 199

Query: 419 YSLQILDISDNNISGSL-PSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYN 477
           Y L++L+IS      ++ P+C + L++  + ++   L   +      H   L  L+LSYN
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYN 258

Query: 478 RLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLH 528
            ++    + +  L +L  + L    L    P     LN L++L++S N L 
Sbjct: 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  149 bits (377), Expect = 2e-38
 Identities = 73/358 (20%), Positives = 129/358 (36%), Gaps = 44/358 (12%)

Query: 301 QILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLK---GHMFSRNFNLTNLRSLQLEGN 357
           + +     +    +PE +         L L  N +K      F+   +  +L  L+L  N
Sbjct: 14  RAVLCHRKRFV-AVPEGIPT---ETRLLDLGKNRIKTLNQDEFA---SFPHLEELELNEN 66

Query: 358 HLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQ 417
            +    P + +   +L  L L +N L          L+ L  + + EN +   +   F  
Sbjct: 67  IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD 126

Query: 418 LYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSY 476
           LY+L+ L++ DN++       F  L S+EQ+ L K  L   +      H   L+ L L +
Sbjct: 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRH 185

Query: 477 NRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPC-F 535
             +N         L +L  L + H      +         L  L +++ NL   +P    
Sbjct: 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAV 244

Query: 536 DNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSG 595
            +            L+     L +    I     I  +          +     L  L  
Sbjct: 245 RHLV---------YLR----FLNLSYNPI---STIEGS----------MLHE--LLRLQE 276

Query: 596 LDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 652
           + L   + +  + P     L  ++ LN+S N LT L  S F ++ ++E+L L  N L 
Sbjct: 277 IQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  133 bits (336), Expect = 3e-33
 Identities = 62/364 (17%), Positives = 121/364 (33%), Gaps = 67/364 (18%)

Query: 271 DILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLAL 330
            I       ++  N + +     F +   L+ L+L+ N ++  +      +  NL  L L
Sbjct: 29  GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGL 87

Query: 331 SNNNLK---GHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKI 387
            +N LK     +F+    L+NL  L +  N +   +        +L+ L + +N L    
Sbjct: 88  RSNRLKLIPLGVFT---GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-- 142

Query: 388 PRWLGNLTGLKHIIMPENHLEGPIPVG-FCQLYSLQILDISDNNISGSLPSCFHPL-SIE 445
                                  I    F  L SL+ L +   N++         L  + 
Sbjct: 143 -----------------------ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI 179

Query: 446 QVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEG 505
            + L    ++  ++  +F     L  L++S+     ++         L+ L + H NL  
Sbjct: 180 VLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT- 237

Query: 506 EVPVQLCE-LNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMI 564
            VP      L  L+ L+LS N +                      L      + +    +
Sbjct: 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL---------RL----QEIQLVGGQL 284

Query: 565 PAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLS 623
                +     F             L+ L  L++S N+ +  +   +  ++  ++TL L 
Sbjct: 285 ---AVVEPY-AFRG-----------LNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILD 328

Query: 624 HNNL 627
            N L
Sbjct: 329 SNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  120 bits (302), Expect = 6e-29
 Identities = 59/329 (17%), Positives = 112/329 (34%), Gaps = 59/329 (17%)

Query: 350 RSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEG 409
           R++          +P+ +   +    L L  N +         +   L+ + + EN +  
Sbjct: 14  RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70

Query: 410 PIPVG-FCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHGQLKRGTFFHCS 467
            +  G F  L++L+ L +  N +       F  L ++ ++ +S+N +   L    F    
Sbjct: 71  -VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLY 128

Query: 468 SLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNL 527
           +L +L++  N L         GL+ L  L L   NL       L  L+ L +L L + N+
Sbjct: 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188

Query: 528 HGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQG 587
           +      F                                                    
Sbjct: 189 NAIRDYSFKR-------------------------------------------------- 198

Query: 588 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLS 647
             L  L  L++S    +  + P       + +L+++H NLT +      +L ++  L+LS
Sbjct: 199 --LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLS 256

Query: 648 YNKLNGKIPHQLVELKTLAVFSVAYNNLS 676
           YN ++      L EL  L    +    L+
Sbjct: 257 YNPISTIEGSMLHELLRLQEIQLVGGQLA 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  110 bits (276), Expect = 1e-25
 Identities = 67/352 (19%), Positives = 133/352 (37%), Gaps = 63/352 (17%)

Query: 46  PSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDV 105
              + L +  + +      +      S  HL+EL ++ N +    P    N+ +LR L +
Sbjct: 32  TETRLLDLGKNRI----KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87

Query: 106 SSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEP-LFNH-SRLKIFDAANNEIKAE 163
            SN+L   I       L+++ +L +S N       L   +F     LK  +  +N++   
Sbjct: 88  RSNRLK-LIPLGVFTGLSNLTKLDISENKIV---ILLDYMFQDLYNLKSLEVGDNDLV-- 141

Query: 164 ITESHSLTAPNFQ----LQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNW 219
                 ++   F     L+ L+L                        L+ +      P  
Sbjct: 142 -----YISHRAFSGLNSLEQLTLEKC--------------------NLTSI------PTE 170

Query: 220 LLENNTKLRQLYLVNDSLTGPFRLPIHSHRW---LRFLDVSNNNFQGHIPVEIGDILPSL 276
            L +   L  L L + ++     +  +S +    L+ L++S+  +   +         +L
Sbjct: 171 ALSHLHGLIVLRLRHLNIN---AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-GLNL 226

Query: 277 ISFNISMNALDSSIPS-SFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNL 335
            S +I+   L +++P  +  ++ +L+ L+LS N ++  I   +    + L+ + L    L
Sbjct: 227 TSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQL 284

Query: 336 K---GHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLS 384
                + F     L  LR L + GN L            +LE L L++N L+
Sbjct: 285 AVVEPYAFR---GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 91.3 bits (227), Expect = 2e-19
 Identities = 72/325 (22%), Positives = 126/325 (38%), Gaps = 48/325 (14%)

Query: 15  FPHFKSLDHLDMVFARTALNTSFLQIIRE----SMPSLKYLSMSDSTLGTNSSRILDQGL 70
           F  F  L+ L+       LN + +  +      ++ +L+ L +  + L      I     
Sbjct: 52  FASFPHLEELE-------LNENIVSAVEPGAFNNLFNLRTLGLRSNRL----KLIPLGVF 100

Query: 71  CSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELML 130
             L +L +L I  N +   L +   ++ +L+ L+V  N L   IS      L S+E+L L
Sbjct: 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTL 159

Query: 131 SNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGV 190
              +    I  E L +   L +    +  I       +++   +F+              
Sbjct: 160 EKCNLTS-IPTEALSHLHGLIVLRLRHLNI-------NAIRDYSFK-------------- 197

Query: 191 TFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRW 250
                    + L+ + +SH           L     L  L + + +LT    L +    +
Sbjct: 198 -------RLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVY 249

Query: 251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQL 310
           LRFL++S N     I   +   L  L    +    L    P +F  +N+L++L++S NQL
Sbjct: 250 LRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308

Query: 311 TGEIPEHLAVSCVNLEFLALSNNNL 335
           T  + E +  S  NLE L L +N L
Sbjct: 309 T-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 90.9 bits (226), Expect = 3e-19
 Identities = 53/268 (19%), Positives = 99/268 (36%), Gaps = 40/268 (14%)

Query: 420 SLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRL 479
             + +         ++P    P     + L KN +   L +  F     L  L+L+ N +
Sbjct: 12  QDRAVLCHRKRFV-AVPEGI-PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIV 68

Query: 480 NGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCE-LNQLQLLDLSNNNLHGPIPPCFDNT 538
           +   P   + L  L  L L  N L+  +P+ +   L+ L  LD+S N +   +   F + 
Sbjct: 69  SAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL 127

Query: 539 TLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQG--KVLSLLSGL 596
                     +LK    SL           ++ +N      ++ YI       L+ L  L
Sbjct: 128 Y---------NLK----SL-----------EVGDN------DLVYISHRAFSGLNSLEQL 157

Query: 597 DLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 655
            L     +  IP +   +L  +  L L H N+  +   +F  L  ++ L++S+      +
Sbjct: 158 TLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216

Query: 656 PHQLVELKTLAVFSVAYNNLSGEIPEWT 683
               +    L   S+ + NL+  +P   
Sbjct: 217 TPNCLYGLNLTSLSITHCNLT-AVPYLA 243

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  143 bits (364), Expect = 5e-38
 Identities = 55/391 (14%), Positives = 104/391 (26%), Gaps = 78/391 (19%)

Query: 273 LPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSN 332
                +     +                   D +                 N +    + 
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS-----NNPQIETRTG 65

Query: 333 NNLKGHMFS-RNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWL 391
             LK       +       +L+L    L  + P    + S L+ + ++   L  ++P  +
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM 123

Query: 392 GNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSK 451
               GL+ + +  N L   +P     L  L+ L I        LP       +     S 
Sbjct: 124 QQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPE-----PLASTDASG 177

Query: 452 NMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQL 511
                           +L +L L +  +  S+P  +  L  L  L + ++ L   +   +
Sbjct: 178 E----------HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAI 225

Query: 512 CELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIH 571
             L +L+ LDL         PP F                                    
Sbjct: 226 HHLPKLEELDLRGCTALRNYPPIFGG---------------------------------- 251

Query: 572 ENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLI 631
                              + L  L L     +  +P  I  LT+++ L+L        +
Sbjct: 252 ------------------RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293

Query: 632 PSTFSNLKHIESLDLSYNKLNGKIPHQLVEL 662
           PS  + L     + +  +       H+ V  
Sbjct: 294 PSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  121 bits (306), Expect = 2e-30
 Identities = 51/293 (17%), Positives = 100/293 (34%), Gaps = 23/293 (7%)

Query: 206 RLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTG-PFRLPIHSHRWLRFLDVSNNNFQGH 264
           R  + + +     W   N+   +       +L      L   +      L++ +      
Sbjct: 37  RHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-Q 95

Query: 265 IPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVN 324
            P +    L  L    I    L   +P +      L+ L L+ N L   +P  +A S   
Sbjct: 96  FPDQAFR-LSHLQHMTIDAAGL-MELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNR 151

Query: 325 LEFLALSNNNL---------KGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEG 375
           L  L++                     +  L NL+SL+LE   +   +P S++   +L+ 
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS 210

Query: 376 LYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSL 435
           L + N+ LS  +   + +L  L+ + +         P  F     L+ L + D +   +L
Sbjct: 211 LKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269

Query: 436 PSCFHPL-SIEQVHLSKNMLHGQLKR--GTFFHCSSLVTLDLSYNRLNGSIPN 485
           P   H L  +E++ L   +    L R         +   + +  +       +
Sbjct: 270 PLDIHRLTQLEKLDLRGCV---NLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  121 bits (305), Expect = 3e-30
 Identities = 57/320 (17%), Positives = 102/320 (31%), Gaps = 25/320 (7%)

Query: 245 IHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILD 304
            H       L    +         +        + + +             N N  QI  
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQ-WQRHYNADRNRW----HSAWRQANSNNPQIET 62

Query: 305 LSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIP 364
            +   L          +      L L +  L      + F L++L+ + ++   L  E+P
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELP 120

Query: 365 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIM---------PENHLEGPIPVGF 415
            ++ + + LE L L  N L   +P  + +L  L+ + +         PE           
Sbjct: 121 DTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179

Query: 416 CQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDL 474
             L +LQ L +    I  SLP+    L +++ + +  + L          H   L  LDL
Sbjct: 180 QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGP--AIHHLPKLEELDL 236

Query: 475 SYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPC 534
                  + P    G + L  LIL   +    +P+ +  L QL+ LDL        +P  
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296

Query: 535 FDN----TTLHESSNNSYSL 550
                    +    +    L
Sbjct: 297 IAQLPANCIILVPPHLQAQL 316

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  115 bits (290), Expect = 3e-28
 Identities = 47/338 (13%), Positives = 94/338 (27%), Gaps = 53/338 (15%)

Query: 345 NLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPE 404
           + +   +L  +G+         LS+         N    + +      N    +      
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTG 65

Query: 405 NHLEG-PIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTF 463
             L+     +          L++    +    P                           
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLP-QFPD------------------------QA 100

Query: 464 FHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLS 523
           F  S L  + +    L   +P+ +   + L  L L  N L   +P  +  LN+L+ L + 
Sbjct: 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158

Query: 524 NNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAY 583
                  +P    +T          +L     SL ++   I   + +  +          
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNL----QSLRLEWTGI---RSLPASIAN------- 204

Query: 584 IYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIES 643
                 L  L  L +  + L   + P I +L +++ L+L         P  F     ++ 
Sbjct: 205 ------LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257

Query: 644 LDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPE 681
           L L        +P  +  L  L    +        +P 
Sbjct: 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  104 bits (261), Expect = 2e-24
 Identities = 62/360 (17%), Positives = 109/360 (30%), Gaps = 54/360 (15%)

Query: 88  GSLPWCLANMTSLRILDVS-SNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFN 146
           GS      + +    L    S  L           L+  +    ++       S     N
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDV-----LSQWQRHYNADR--NRWHSAWRQAN 54

Query: 147 HSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVR 206
            +  +I       +KA        T P     AL L         FP   +    L+ + 
Sbjct: 55  SNNPQIETRTGRALKATADLLEDATQPG--RVALELR--SVPLPQFPDQAFRLSHLQHMT 110

Query: 207 LSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLP--IHSHRWLRFLDVSNNNFQGH 264
           +       E P+ + +    L  L L  + L     LP  I S   LR L +        
Sbjct: 111 IDA-AGLMELPDTM-QQFAGLETLTLARNPLR---ALPASIASLNRLRELSIRACPELTE 165

Query: 265 IPVEIGDI--------LPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPE 316
           +P  +           L +L S  +    +  S+P+S  N+  L+ L + N+ L+  +  
Sbjct: 166 LPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLS-ALGP 223

Query: 317 HLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGL 376
            +                          +L  L  L L G       P      + L+ L
Sbjct: 224 AIH-------------------------HLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258

Query: 377 YLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLP 436
            L + S    +P  +  LT L+ + +        +P    QL +  I+ +  +  +    
Sbjct: 259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  102 bits (257), Expect = 6e-24
 Identities = 52/345 (15%), Positives = 103/345 (29%), Gaps = 56/345 (16%)

Query: 76  LQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHF 135
            + LY   +         L+        D +        S+    +  + +    +    
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWH-----SAWRQANSNNPQIETRTGRAL 68

Query: 136 Q-IPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPK 194
           +     LE           +  +  +                               FP 
Sbjct: 69  KATADLLEDA-TQPGRVALELRSVPLP-----------------------------QFPD 98

Query: 195 FLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLP--IHSHRWLR 252
             +    L+ + +       E P+  ++    L  L L  + L     LP  I S   LR
Sbjct: 99  QAFRLSHLQHMTIDA-AGLMELPDT-MQQFAGLETLTLARNPLR---ALPASIASLNRLR 153

Query: 253 FLDVSNNNFQGHIPVEIGDI--------LPSLISFNISMNALDSSIPSSFGNMNFLQILD 304
            L +        +P  +           L +L S  +    +  S+P+S  N+  L+ L 
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLK 212

Query: 305 LSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEG-NHLEGEI 363
           + N+ L+  +   +      LE L L       +          L+ L L+  ++L   +
Sbjct: 213 IRNSPLS-ALGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TL 269

Query: 364 PQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLE 408
           P  + + + LE L L       ++P  +  L     I++P +   
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.4 bits (194), Expect = 7e-16
 Identities = 48/297 (16%), Positives = 82/297 (27%), Gaps = 65/297 (21%)

Query: 44  SMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRIL 103
           + P    L +    L              L HLQ + ID   L   LP  +     L  L
Sbjct: 79  TQPGRVALELRSVPLPQ-----FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETL 132

Query: 104 DVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAE 163
            ++ N L  ++ +S +  L  + EL +                   L        E+   
Sbjct: 133 TLARNPLR-ALPAS-IASLNRLRELSIRAC--------------PELT-------ELPEP 169

Query: 164 ITESHSLTAPNF--QLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLL 221
           +  + +         LQ+L L                                  P   +
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEW--------------------------TGIRSLPAS-I 202

Query: 222 ENNTKLRQLYLVNDSLTGPFRLP--IHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISF 279
            N   L+ L + N  L+    L   IH    L  LD+       + P   G     L   
Sbjct: 203 ANLQNLKSLKIRNSPLSA---LGPAIHHLPKLEELDLRGCTALRNYPPIFGG-RAPLKRL 258

Query: 280 NISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLK 336
            +   +   ++P     +  L+ LDL        +P  +A        + +  +   
Sbjct: 259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA-QLPANCIILVPPHLQA 314

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  143 bits (362), Expect = 3e-37
 Identities = 78/435 (17%), Positives = 146/435 (33%), Gaps = 102/435 (23%)

Query: 221 LENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFN 280
           L+ +     +++   +    F     +    + +   N+  +  +P  + D    +   N
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 75

Query: 281 ISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLK---G 337
           ++   ++     +F   + +Q L +  N +   +P H+  +   L  L L  N+L     
Sbjct: 76  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPR 134

Query: 338 HMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGL 397
            +F    N   L +L +  N+LE     +    +SL+ L L++N L+  +   L  +  L
Sbjct: 135 GIFH---NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSL 188

Query: 398 KHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQ 457
            H  +  N L            +++ LD S N+I+                         
Sbjct: 189 FHANVSYNLLST-----LAIPIAVEELDASHNSIN------------------------V 219

Query: 458 LKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQL 517
           ++         L  L L +N L      W+     L  + L +N LE  +     ++ +L
Sbjct: 220 VRGPVN---VELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274

Query: 518 QLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFT 577
           + L +SNN L   +                                              
Sbjct: 275 ERLYISNNRLVA-LNLYGQP---------------------------------------- 293

Query: 578 TKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSN 637
                       +  L  LDLS N  + H+        R++ L L HN++  L  ST   
Sbjct: 294 ------------IPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHT 340

Query: 638 LKHIESLDLSYNKLN 652
           LK+   L LS+N  +
Sbjct: 341 LKN---LTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  132 bits (333), Expect = 2e-33
 Identities = 68/328 (20%), Positives = 130/328 (39%), Gaps = 23/328 (7%)

Query: 202 LEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNF 261
            + V   +  M  + P  LL++  ++  L L +  +             ++ L +  N  
Sbjct: 47  QKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 105

Query: 262 QGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVS 321
           + ++P  +   +P L    +  N L S     F N   L  L +SNN L   I +    +
Sbjct: 106 R-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQA 163

Query: 322 CVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNN 381
             +L+ L LS+N L     S    + +L    +  N L      +L+   ++E L  ++N
Sbjct: 164 TTSLQNLQLSSNRLTHVDLS---LIPSLFHANVSYNLL-----STLAIPIAVEELDASHN 215

Query: 382 SLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHP 441
           S++  +         L  + +  N+L             L  +D+S N +   +   F  
Sbjct: 216 SIN-VVRG--PVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVK 270

Query: 442 L-SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGH 500
           +  +E++++S N L             +L  LDLS+N L   +        +L +L L H
Sbjct: 271 MQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH 327

Query: 501 NNLEGEVPVQLCELNQLQLLDLSNNNLH 528
           N++   + +     + L+ L LS+N+  
Sbjct: 328 NSIV-TLKLST--HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  124 bits (313), Expect = 7e-31
 Identities = 81/409 (19%), Positives = 143/409 (34%), Gaps = 50/409 (12%)

Query: 66  LDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSI 125
           +D  L       +++ID         +    + + +I+   ++ +   + ++ L     +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 126 EELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSG 185
           E L L++   +  I          ++      N I+                    L   
Sbjct: 72  ELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIR-------------------YLPPH 111

Query: 186 YGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPI 245
               V           L  + L   N     P  +  N  KL  L + N++L        
Sbjct: 112 VFQNVP---------LLTVLVLER-NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 161

Query: 246 HSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDL 305
            +   L+ L +S+N    H+ +    ++PSL   N+S N L     S+      ++ LD 
Sbjct: 162 QATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLL-----STLAIPIAVEELDA 212

Query: 306 SNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQ 365
           S+N +   +   +    V L  L L +NNL     +   N   L  + L  N LE  +  
Sbjct: 213 SHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYH 266

Query: 366 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILD 425
              K   LE LY++NN L   +  +   +  LK + +  NHL   +     Q   L+ L 
Sbjct: 267 PFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLY 324

Query: 426 ISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDL 474
           +  N+I     S  H L  + + LS N       R  F + +     D 
Sbjct: 325 LDHNSIVTLKLSTHHTL--KNLTLSHNDWDCNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  123 bits (311), Expect = 2e-30
 Identities = 62/337 (18%), Positives = 119/337 (35%), Gaps = 44/337 (13%)

Query: 341 SRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHI 400
           S          + ++    +          ++ + +   N+++       L +   ++ +
Sbjct: 15  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 74

Query: 401 IMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHGQLK 459
            + +  +E      F   +++Q L +  N I    P  F  +  +  + L +N L   L 
Sbjct: 75  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP 133

Query: 460 RGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQL 519
           RG F +   L TL +S N L     +     + L +L L  N L     V L  +  L  
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFH 190

Query: 520 LDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTK 579
            ++S N L   +        L  S N+                                 
Sbjct: 191 ANVSYNLLST-LAIPIAVEELDASHNS--------------------------------- 216

Query: 580 NIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLK 639
            I  + +G V   L+ L L  N L       + N   +  ++LS+N L  ++   F  ++
Sbjct: 217 -INVV-RGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272

Query: 640 HIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLS 676
            +E L +S N+L   +      + TL V  +++N+L 
Sbjct: 273 RLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  105 bits (264), Expect = 2e-24
 Identities = 68/366 (18%), Positives = 126/366 (34%), Gaps = 81/366 (22%)

Query: 44  SMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRIL 103
           S   ++ L+++D  +      I          +Q+LY+  N +R   P    N+  L +L
Sbjct: 67  SFRQVELLNLNDLQI----EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122

Query: 104 DVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAE 163
            +  N L+ S+      +   +  L +SNN+ +  I  +     + L+    ++N +   
Sbjct: 123 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLT-- 178

Query: 164 ITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLEN 223
                     +  L  +                     L    +S+  +        L  
Sbjct: 179 ----------HVDLSLIP-------------------SLFHANVSYNLLS------TLAI 203

Query: 224 NTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISM 283
              + +L                          S+N+    +    G +   L    +  
Sbjct: 204 PIAVEELDA------------------------SHNSIN-VVR---GPVNVELTILKLQH 235

Query: 284 NALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRN 343
           N L     +   N   L  +DLS N+L  +I  H  V    LE L +SNN L     +  
Sbjct: 236 NNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV--ALNLY 290

Query: 344 F-NLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIM 402
              +  L+ L L  NHL   + ++  +   LE LYL++NS+   +   L     LK++ +
Sbjct: 291 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTL 346

Query: 403 PENHLE 408
             N  +
Sbjct: 347 SHNDWD 352

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  144 bits (365), Expect = 6e-37
 Identities = 74/419 (17%), Positives = 137/419 (32%), Gaps = 51/419 (12%)

Query: 268 EIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEF 327
           EI           ++ ++L  ++ S   +   ++ LDLS N L+      LA     LE 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-PFTKLEL 62

Query: 328 LALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKI 387
           L LS+N L         +L+ LR+L L  N++     Q L    S+E L+  NN++S ++
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RV 114

Query: 388 PRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISG-SLPSCFHPL-SIE 445
                   G K+I +  N +     +       +Q LD+  N I   +         ++E
Sbjct: 115 S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 446 QVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEG 505
            ++L  N ++  +K       + L TLDLS N+L   +       + ++ + L +N L  
Sbjct: 173 HLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 506 EVPVQLCELNQLQLLDLSNNNLHGPIPPCF--DNTTLHESSNNSYSLKPFETSLVMDSMM 563
            +   L     L+  DL  N  H      F   N  +   +  +      +         
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV-- 285

Query: 564 IPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLT--RIQTLN 621
                                      +L       C  L      ++  L       L+
Sbjct: 286 --------------------------PTLGHYGAYCCEDLPAPFADRLIALKRKEHALLS 319

Query: 622 LSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIP 680
              +    L     +  +    +D    +    I    +  +           L  ++ 
Sbjct: 320 GQGSETERLECERENQAR-QREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVS 377

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  137 bits (346), Expect = 2e-34
 Identities = 80/495 (16%), Positives = 159/495 (32%), Gaps = 63/495 (12%)

Query: 41  IRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSL 100
           I+++    K   ++DS+L     + L     S  +++EL +  N L       LA  T L
Sbjct: 5   IKQNGNRYKIEKVTDSSL----KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 101 RILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEI 160
            +L++SSN L     +  L  L+++  L L+NN+      ++ L     ++   AANN I
Sbjct: 61  ELLNLSSNVLY---ETLDLESLSTLRTLDLNNNY------VQELLVGPSIETLHAANNNI 111

Query: 161 KAEITESHSLTAPNFQ-LQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNW 219
                    ++    Q  + + L++                          N      + 
Sbjct: 112 S-------RVSCSRGQGKKNIYLAN--------------------------NKITMLRDL 138

Query: 220 LLENNTKLRQLYLVNDSLTG-PFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLIS 278
                ++++ L L  + +    F     S   L  L++  N     +  ++      L +
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV--FAKLKT 195

Query: 279 FNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGH 338
            ++S N L + +   F +   +  + L NN+L   I + L     NLE   L  N     
Sbjct: 196 LDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFH-C 251

Query: 339 MFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLK 398
              R+F   N R   +    ++    Q+  +C+     +            +   L  LK
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALK 311

Query: 399 HIIMPENHLEG----PIPVGFCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNM 453
                    +G     +          + +D         +        +   +   K  
Sbjct: 312 RKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKA 371

Query: 454 LHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLI-LGHNNLEGEVPVQLC 512
           L  +         + L             + +  +  S L  L  +     E  V  Q  
Sbjct: 372 LD-EQVSNGRRAHAELDGTLQQAVGQI-ELQHATEEQSPLQLLRAIVKRYEEMYVEQQSV 429

Query: 513 ELNQLQLLDLSNNNL 527
           + N ++  D+  +  
Sbjct: 430 QNNAIRDWDMYQHKE 444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  131 bits (331), Expect = 2e-32
 Identities = 62/458 (13%), Positives = 143/458 (31%), Gaps = 68/458 (14%)

Query: 89  SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQ--IPISLEPLFN 146
           ++     N    +I  V+ + L     +S      +++EL LS N         L P   
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPF-- 57

Query: 147 HSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVR 206
            ++L++ + ++N +  E  +  SL+     L+ L L++                      
Sbjct: 58  -TKLELLNLSSNVLY-ETLDLESLS----TLRTLDLNN---------------------- 89

Query: 207 LSHVNMDGEFPNWL--LENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGH 264
                      N++  L     +  L+  N++++   R+     +  + + ++NN     
Sbjct: 90  -----------NYVQELLVGPSIETLHAANNNIS---RVSCSRGQGKKNIYLANNKITML 135

Query: 265 IPVEIGDILPSLISFNISMNALDS-SIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCV 323
             ++ G     +   ++ +N +D+ +      + + L+ L+L  N +  ++   +     
Sbjct: 136 RDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV--VFA 191

Query: 324 NLEFLALSNNNLKGHMFSRNF-NLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNS 382
            L+ L LS+N L        F +   +  + L  N L   I ++L    +LE   L  N 
Sbjct: 192 KLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248

Query: 383 LS-GKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHP 441
              G +  +      ++ +   +  ++        +     +                  
Sbjct: 249 FHCGTLRDFFSKNQRVQTV--AKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADR 306

Query: 442 LSIEQV----HLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLI 497
           L   +      LS      +       + +    +D    +    I            L 
Sbjct: 307 LIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLE 366

Query: 498 LGHNNLEGEVP---VQLCELNQLQLLDLSNNNLHGPIP 532
                L+ +V        EL+      +    L     
Sbjct: 367 QKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATE 404

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  129 bits (326), Expect = 6e-32
 Identities = 63/463 (13%), Positives = 141/463 (30%), Gaps = 28/463 (6%)

Query: 220 LLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISF 279
           + +N  + +   + + SL         S   ++ LD+S N        ++      L   
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP-FTKLELL 63

Query: 280 NISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHM 339
           N+S N L         +++ L+ LDL+NN +  E+         ++E L  +NNN+    
Sbjct: 64  NLSSNVL--YETLDLESLSTLRTLDLNNNYVQ-ELLVG-----PSIETLHAANNNISRVS 115

Query: 340 FSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSG-KIPRWLGNLTGLK 398
            S        +++ L  N +           S ++ L L  N +          +   L+
Sbjct: 116 CS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 399 HIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHGQ 457
           H+ +  N +   +         L+ LD+S N ++  +   F     +  + L  N L   
Sbjct: 173 HLNLQYNFIYD-VKGQ-VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-L 228

Query: 458 LKRGTFFHCSSLVTLDLSYNRLN-GSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQ 516
           +++       +L   DL  N  + G++ ++     ++  +      ++        E   
Sbjct: 229 IEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV--AKQTVKKLTGQNEEECTV 285

Query: 517 LQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFE--TSLVMDSMMIPAEKQIHENF 574
             L             P  D     +   ++           L  +      +++I    
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALK 345

Query: 575 EFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPST 634
           E     I  +           L+     L   +         +            L    
Sbjct: 346 EQYRTVIDQVTLR--KQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIEL-QHA 402

Query: 635 FSNLKHIESLDLSYNKLNGK-IPHQLVELKTLAVFSVAYNNLS 676
                 ++ L     +     +  Q V+   +  + +  +  +
Sbjct: 403 TEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 84.9 bits (210), Expect = 2e-17
 Identities = 40/223 (17%), Positives = 79/223 (35%), Gaps = 24/223 (10%)

Query: 463 FFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDL 522
             + +      ++ + L  ++ +       +  L L  N L       L    +L+LL+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 523 SNNNLHGPIPPCFDNTTLHE---SSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTK 579
           S+N L+         +TL     ++N    L     S+               N      
Sbjct: 66  SSNVLYE-TLDLESLSTLRTLDLNNNYVQELLVG-PSIE--------TLHAANN------ 109

Query: 580 NIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGL-IPSTFSNL 638
           NI+ +           + L+ NK+        G  +R+Q L+L  N +  +      ++ 
Sbjct: 110 NISRV-SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 639 KHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPE 681
             +E L+L YN +   +  Q+V    L    ++ N L+  +  
Sbjct: 169 DTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGP 208

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  139 bits (352), Expect = 2e-35
 Identities = 92/433 (21%), Positives = 140/433 (32%), Gaps = 91/433 (21%)

Query: 250 WLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPS-SFGNMNFLQILDLSNN 308
            + ++D+S N+    +       L  L    +        I + +F  ++ L IL L  N
Sbjct: 31  HVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 309 QLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNF--NLTNLRSLQLEGNHLEGEIPQS 366
           Q   ++         NLE L L+  NL G + S NF   LT+L  L L  N+++   P S
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 367 L-SKCSSLEGLYLNNN-----------SLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG 414
                     L L  N           +  GK    L  L+ +    M E  L       
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL-RLSSITLQDMNEYWLGWEKCGN 207

Query: 415 FCQLYSLQILDISDNNISGSLPSCFHPL----SIEQVHLSKNMLHGQ---------LKRG 461
             +  S+  LD+S N    S+   F        I+ + LS +   G              
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267

Query: 462 TFF--HCSSLVTLDLSYNRLNGSIPNWV-DGLSQLSHLILGHNNLEGEVPVQLCE-LNQL 517
           TF     S + T DLS +++  ++   V    + L  L L  N +  ++       L  L
Sbjct: 268 TFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHL 325

Query: 518 QLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFT 577
             L+LS N L       F+N                                        
Sbjct: 326 LKLNLSQNFLGSIDSRMFEN---------------------------------------- 345

Query: 578 TKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFS 636
                       L  L  LDLS N  I  +  Q    L  ++ L L  N L  +    F 
Sbjct: 346 ------------LDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392

Query: 637 NLKHIESLDLSYN 649
            L  ++ + L  N
Sbjct: 393 RLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  133 bits (336), Expect = 2e-33
 Identities = 80/398 (20%), Positives = 136/398 (34%), Gaps = 69/398 (17%)

Query: 289 SIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNF-NLT 347
            +P+       +  +DLS N +  E+ E       +L+FL +        + +  F  L+
Sbjct: 27  ELPAH------VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79

Query: 348 NLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSL-SGKIPR-WLGNLTGLKHIIMPEN 405
           +L  L+L+ N        + +  ++LE L L   +L    +   +   LT L+ +++ +N
Sbjct: 80  SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 406 HLEGPIPVG-FCQLYSLQILDISDNNISGSLPSCFHPLSIEQV---HLSKNMLH------ 455
           +++   P   F  +    +LD++ N +             +      LS   L       
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199

Query: 456 -GQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCEL 514
            G  K G  F  +S+ TLDLS N    S+          + +     +    +       
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259

Query: 515 NQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKP--FETSLVMDSMMIPAEKQIHE 572
           N     + +   L           T   S +  ++L    F                   
Sbjct: 260 NFKDPDNFTFKGLEAS-----GVKTCDLSKSKIFALLKSVFSH----------------- 297

Query: 573 NFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLI 631
                             + L  L L+ N+ I  I       LT +  LNLS N L  + 
Sbjct: 298 -----------------FTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSID 339

Query: 632 PSTFSNLKHIESLDLSYNKLNGKIPHQ----LVELKTL 665
              F NL  +E LDLSYN +   +  Q    L  LK L
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKEL 376

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  117 bits (295), Expect = 4e-28
 Identities = 81/439 (18%), Positives = 149/439 (33%), Gaps = 72/439 (16%)

Query: 75  HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH 134
           H+  + +  N +        + +  L+ L V        I ++    L+S+  L L  N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 135 FQIPISLEP-LFNH-SRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTF 192
           F     LE   FN  + L++                        L    LS  +   +T 
Sbjct: 91  FL---QLETGAFNGLANLEVLTLTQC-----------------NLDGAVLSGNFFKPLTS 130

Query: 193 PKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTG--PFRLPIHSHRW 250
            + L     L D  +  +     F N       +   L L  + +       L     + 
Sbjct: 131 LEMLV----LRDNNIKKIQPASFFLNM-----RRFHVLDLTFNKVKSICEEDLLNFQGKH 181

Query: 251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQL 310
              L +S+   Q                 +++   L      +      +  LDLS N  
Sbjct: 182 FTLLRLSSITLQ-----------------DMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224

Query: 311 TGEIPEHL--AVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLS 368
              + +    A++   ++ L LSN+   G  F    N  +  +   +G            
Sbjct: 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT-NFKDPDNFTFKGL----------- 272

Query: 369 KCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG-FCQLYSLQILDIS 427
           + S ++   L+ + +   +     + T L+ + + +N +   I    F  L  L  L++S
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLS 331

Query: 428 DNNISGSLPSC-FHPL-SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPN 485
            N +  S+ S  F  L  +E + LS N +   L   +F    +L  L L  N+L  S+P+
Sbjct: 332 QNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPD 388

Query: 486 WV-DGLSQLSHLILGHNNL 503
            + D L+ L  + L  N  
Sbjct: 389 GIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  112 bits (282), Expect = 2e-26
 Identities = 69/359 (19%), Positives = 131/359 (36%), Gaps = 38/359 (10%)

Query: 201 DLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSH-RWLRFLDVSNN 259
            +  V LS  N   E           L+ L +   +     R         L  L +  N
Sbjct: 31  HVNYVDLSL-NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 260 NFQGHIPVEIGDILPSLISFNISMNALDSSI--PSSFGNMNFLQILDLSNNQLTGEIPEH 317
            F   +     + L +L    ++   LD ++   + F  +  L++L L +N +    P  
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 318 LAVSCVNLEFLALSNNNLK----------GHMFSRNFNLTNLRSLQLEGNHLEGEIPQSL 367
             ++      L L+ N +K                   L+++    +    L  E   + 
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 368 SKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHII-------------MPENHLEGPIPVG 414
            K +S+  L L+ N     + +   +      I                  + + P    
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268

Query: 415 FCQLY--SLQILDISDNNISGSLPSC-FHPLS-IEQVHLSKNMLHGQLKRGTFFHCSSLV 470
           F  L    ++  D+S + I  +L    F   + +EQ+ L++N ++ ++    F+  + L+
Sbjct: 269 FKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLL 326

Query: 471 TLDLSYNRLNGSIPNWV-DGLSQLSHLILGHNNLEGEVPVQLCE-LNQLQLLDLSNNNL 527
            L+LS N L GSI + + + L +L  L L +N++   +  Q    L  L+ L L  N L
Sbjct: 327 KLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 62.5 bits (152), Expect = 3e-10
 Identities = 60/357 (16%), Positives = 107/357 (29%), Gaps = 90/357 (25%)

Query: 15  FPHFKSLDHLDMVFARTALNTSFLQIIR-----ESMPSLKYLSMSDSTLGTNSSRILDQ- 68
           F    SL+ L        L  + ++ I+      +M     L ++ + + +     L   
Sbjct: 125 FKPLTSLEMLV-------LRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF 177

Query: 69  -----GLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLT 123
                 L  L  +    ++   L           TS+  LD+S N    S++      + 
Sbjct: 178 QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIA 237

Query: 124 SIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLS 183
             +   L  ++     S                +   K +             ++   LS
Sbjct: 238 GTKIQSLILSNSYNMGSSFG-------------HTNFK-DPDNFTFKGLEASGVKTCDLS 283

Query: 184 SGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRL 243
                                 ++  +         +  + T L QL L           
Sbjct: 284 KS--------------------KIFAL------LKSVFSHFTDLEQLTL----------- 306

Query: 244 PIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQIL 303
                        + N     I       L  L+  N+S N L S     F N++ L++L
Sbjct: 307 -------------AQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL 352

Query: 304 DLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLK---GHMFSRNFNLTNLRSLQLEGN 357
           DLS N +   + +   +   NL+ LAL  N LK     +F     LT+L+ + L  N
Sbjct: 353 DLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFD---RLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 7/94 (7%)

Query: 44  SMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCL-ANMTSLRI 102
            +  L  L++S + LG+  SR+ +    +L  L+ L +  N +R +L       + +L+ 
Sbjct: 321 GLTHLLKLNLSQNFLGSIDSRMFE----NLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKE 375

Query: 103 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQ 136
           L + +NQL  S+       LTS++++ L  N + 
Sbjct: 376 LALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  135 bits (343), Expect = 2e-35
 Identities = 62/263 (23%), Positives = 110/263 (41%), Gaps = 18/263 (6%)

Query: 268 EIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEF 327
           EI           ++ ++L  ++ S   +   ++ LDLS N L+ +I          LE 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLEL 62

Query: 328 LALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKI 387
           L LS+N L  +      +L+ LR+L L  N++     Q L    S+E L+  NN++S ++
Sbjct: 63  LNLSSNVL--YETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RV 114

Query: 388 PRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISG-SLPSCFHPL-SIE 445
                   G K+I +  N +     +       +Q LD+  N I   +         ++E
Sbjct: 115 S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 446 QVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEG 505
            ++L  N ++  +K       + L TLDLS N+L   +       + ++ + L +N L  
Sbjct: 173 HLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 506 EVPVQLCELNQLQLLDLSNNNLH 528
            +   L     L+  DL  N  H
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  129 bits (327), Expect = 3e-33
 Identities = 59/364 (16%), Positives = 117/364 (32%), Gaps = 69/364 (18%)

Query: 345 NLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPE 404
           N    +  ++  + L+  +        +++ L L+ N LS      L   T L+ + +  
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 405 NHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFF 464
           N L   +      L +L+ LD+++N +   L       SIE +H + N +  ++      
Sbjct: 68  NVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVGP---SIETLHAANNNIS-RVSCSRG- 119

Query: 465 HCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEG-EVPVQLCELNQLQLLDLS 523
                  + L+ N++           S++ +L L  N ++           + L+ L+L 
Sbjct: 120 --QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 524 NNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAY 583
            N ++  +        L                                           
Sbjct: 178 YNFIYD-VKGQVVFAKLKT----------------------------------------- 195

Query: 584 IYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIES 643
                       LDLS NKL   + P+  +   +  ++L +N L   I       +++E 
Sbjct: 196 ------------LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEH 241

Query: 644 LDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGL 703
            DL  N  +     +    K   V +VA   +  ++     +  T     + G      L
Sbjct: 242 FDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDL 299

Query: 704 PLPI 707
           P P 
Sbjct: 300 PAPF 303

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  111 bits (280), Expect = 4e-27
 Identities = 59/304 (19%), Positives = 116/304 (38%), Gaps = 30/304 (9%)

Query: 415 FCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLD 473
                  +I  ++D+++  +L S      +++++ LS N L  Q+        + L  L+
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLN 64

Query: 474 LSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPP 533
           LS N L     + ++ LS L  L L +N ++     +L     ++ L  +NNN+      
Sbjct: 65  LSSNVLY-ETLD-LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCS 117

Query: 534 CFDN-TTLHESSNNSYSLKPFE----TSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGK 588
                  ++ ++N    L+  +    + +            +  N E  T N A +    
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQ--------YLDLKLN-EIDTVNFAELAAS- 167

Query: 589 VLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSY 648
               L  L+L  N +   +  Q+    +++TL+LS N L   +   F +   +  + L  
Sbjct: 168 -SDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRN 223

Query: 649 NKLNGKIPHQLVELKTLAVFSVAYNNLS-GEIPEWTAQFATFNESSYEGNTFLCGLPLPI 707
           NKL   I   L   + L  F +  N    G + ++ ++       + +    L G     
Sbjct: 224 NKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282

Query: 708 CRSP 711
           C  P
Sbjct: 283 CTVP 286

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  106 bits (266), Expect = 3e-25
 Identities = 67/373 (17%), Positives = 131/373 (35%), Gaps = 60/373 (16%)

Query: 38  LQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANM 97
           +  I+++    K   ++DS+L     + L     S  +++EL +  N L       LA  
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSL----KQALASLRQSAWNVKELDLSGNPLSQISAADLAPF 57

Query: 98  TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAAN 157
           T L +L++SSN L     +  L  L+++  L L+NN+      ++ L     ++   AAN
Sbjct: 58  TKLELLNLSSNVLY---ETLDLESLSTLRTLDLNNNY------VQELLVGPSIETLHAAN 108

Query: 158 NEIKAEITESHSLTAPNFQ-LQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEF 216
           N I         ++    Q  + + L++                          N     
Sbjct: 109 NNIS-------RVSCSRGQGKKNIYLAN--------------------------NKITML 135

Query: 217 PNWLLENNTKLRQLYLVNDSLTG-PFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPS 275
            +      ++++ L L  + +    F     S   L  L++  N     +  ++      
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV--FAK 192

Query: 276 LISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNL 335
           L + ++S N L + +   F +   +  + L NN+L   I + L     NLE   L  N  
Sbjct: 193 LKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGF 249

Query: 336 KGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLT 395
                 R+F   N R   +    ++    Q+  +C+     +             L    
Sbjct: 250 H-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED-----LPAPF 303

Query: 396 GLKHIIMPENHLE 408
             + I +  +H  
Sbjct: 304 ADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  103 bits (260), Expect = 2e-24
 Identities = 65/356 (18%), Positives = 110/356 (30%), Gaps = 47/356 (13%)

Query: 146 NHSRLKIFDAANNEIKAEITES-HSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLED 204
           N +R KI    ++ +K  +     S       ++ L LS      ++    L     LE 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAW----NVKELDLSGNPLSQIS-AADLAPFTKLEL 62

Query: 205 VRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGH 264
           + LS  N+  E  +  LE+ + LR L L N+ +     L +     +  L  +NNN    
Sbjct: 63  LNLSS-NVLYETLD--LESLSTLRTLDLNNNYVQ---ELLVGPS--IETLHAANNNIS-R 113

Query: 265 IPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVN 324
           +            +  ++ N +        G  + +Q LDL  N++       LA S   
Sbjct: 114 VSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 325 LEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLS 384
           LE L L  N +             L++L L  N L   +       + +  + L NN L 
Sbjct: 171 LEHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

Query: 385 GKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSI 444
                                     I        +L+  D+  N         F   + 
Sbjct: 228 L-------------------------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

Query: 445 EQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGH 500
               ++K  +  +L       C+                  + D L  L H    H
Sbjct: 263 RVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.9 bits (138), Expect = 7e-09
 Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 607 IPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLA 666
           I     N  R +   ++ ++L   + S   +  +++ LDLS N L+      L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 667 VFSVAYNNLSGEIPE 681
           + +++ N L  E  +
Sbjct: 62  LLNLSSNVLY-ETLD 75

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  138 bits (349), Expect = 4e-35
 Identities = 102/582 (17%), Positives = 184/582 (31%), Gaps = 136/582 (23%)

Query: 71  CSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELML 130
            S   LQE    +++L   +P    N+ S      + ++   +                 
Sbjct: 8   VSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQ--------R 58

Query: 131 SNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGV 190
                ++   L+      +    +  N  +        SL      L++L  S       
Sbjct: 59  EMAVSRLRDCLDR-----QAHELELNNLGLS-------SLPELPPHLESLVASC------ 100

Query: 191 TFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRW 250
                               N   E P         L+ L + N++L     LP      
Sbjct: 101 --------------------NSLTELPELP----QSLKSLLVDNNNLKALSDLPPL---- 132

Query: 251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQL 310
           L +L VSNN  +  +P E+ +    L   ++  N+L   +P    +   L+ +   NNQL
Sbjct: 133 LEYLGVSNNQLE-KLP-ELQN-SSFLKIIDVDNNSL-KKLPDLPPS---LEFIAAGNNQL 185

Query: 311 TGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKC 370
             E+PE    +   L  +   NN+LK           +L S+    N LE E+P  L   
Sbjct: 186 E-ELPEL--QNLPFLTAIYADNNSLK----KLPDLPLSLESIVAGNNILE-ELP-ELQNL 236

Query: 371 SSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNN 430
             L  +Y +NN L   +P    +L  L    + +N+L   +P     L  L + +   + 
Sbjct: 237 PFLTTIYADNNLLK-TLPDLPPSLEALN---VRDNYLTD-LPELPQSLTFLDVSENIFSG 291

Query: 431 ISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGL 490
           +S   P      ++  ++ S N +     R       SL  L++S N+L   +P      
Sbjct: 292 LSELPP------NLYYLNASSNEI-----RSLCDLPPSLEELNVSNNKLI-ELP---ALP 336

Query: 491 SQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSL 550
            +L  LI   N+L  EVP        L+ L +  N L    P   ++      +++   +
Sbjct: 337 PRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLRE-FPDIPESVEDLRMNSHLAEV 391

Query: 551 KPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQ 610
                +L                                      L +  N L    P  
Sbjct: 392 PELPQNLKQ------------------------------------LHVETNPLR-EFPDI 414

Query: 611 IGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 652
             ++     L ++   +             +E     ++  +
Sbjct: 415 PESVED---LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  132 bits (335), Expect = 3e-33
 Identities = 96/449 (21%), Positives = 157/449 (34%), Gaps = 97/449 (21%)

Query: 247 SHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGN---------- 296
           S+ +L+     ++N    +PVE  + + S   +  + +  + + P   G           
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 297 ---MNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQ 353
                    L+L+N  L+  +PE       +LE L  S N+L   +     +L +L    
Sbjct: 67  DCLDRQAHELELNNLGLS-SLPELPP----HLESLVASCNSLT-ELPELPQSLKSLLVDN 120

Query: 354 LEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPV 413
                L    P        LE L ++NN L  K+P  L N + LK I +  N L+  +P 
Sbjct: 121 NNLKALSDLPP-------LLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LPD 170

Query: 414 GFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLD 473
                 SL+ +   +N +   LP   +   +  ++   N L     +       SL ++ 
Sbjct: 171 ---LPPSLEFIAAGNNQLE-ELPELQNLPFLTAIYADNNSL-----KKLPDLPLSLESIV 221

Query: 474 LSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPP 533
              N L       +  L  L+ +   +N L+  +P     L  L + D    +L    P 
Sbjct: 222 AGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDL----PE 274

Query: 534 CFDN-TTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSL 592
              + T L  S N    L     +L                                   
Sbjct: 275 LPQSLTFLDVSENIFSGLSELPPNLYY--------------------------------- 301

Query: 593 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 652
              L+ S N+ I  +     +L     LN+S+N L  L P+    L   E L  S+N L 
Sbjct: 302 ---LNASSNE-IRSLCDLPPSLE---ELNVSNNKLIEL-PALPPRL---ERLIASFNHLA 350

Query: 653 GKIPHQLVELKTLAVFSVAYNNLSGEIPE 681
            ++P     LK L    V YN L  E P+
Sbjct: 351 -EVPELPQNLKQL---HVEYNPLR-EFPD 374

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  128 bits (325), Expect = 6e-32
 Identities = 99/493 (20%), Positives = 170/493 (34%), Gaps = 100/493 (20%)

Query: 223 NNTKLRQLYLVNDSLTGPFRLP--IHSHRWLRFLDVSNNNFQGHIPVEIGD--------- 271
           +NT L++    + +LT    +P    + +       + + ++ + P   G+         
Sbjct: 9   SNTFLQEPLRHSSNLT---EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 272 ---ILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFL 328
              +        ++   L SS+P    +   L+ L  S N LT E+PE    S  +L   
Sbjct: 66  RDCLDRQAHELELNNLGL-SSLPELPPH---LESLVASCNSLT-ELPELPQ-SLKSLLVD 119

Query: 329 ALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIP 388
             +   L             L  L +  N LE ++P  L   S L+ + ++NNSL  K+P
Sbjct: 120 NNNLKALSD-------LPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLP 169

Query: 389 RWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVH 448
               +L  +       N LE         L  L  +   +N++   LP    PLS+E + 
Sbjct: 170 DLPPSLEFIA---AGNNQLEELPE--LQNLPFLTAIYADNNSLK-KLPD--LPLSLESIV 221

Query: 449 LSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVP 508
              N+L  +L      +   L T+    N L  ++P+       L  L +  N L  ++P
Sbjct: 222 AGNNILE-ELP--ELQNLPFLTTIYADNNLLK-TLPDL---PPSLEALNVRDNYLT-DLP 273

Query: 509 VQLCELNQLQLLDLSNNNLHGPIPPCFDN-TTLHESSNNSYSLKPFETSLVMDSMMIPAE 567
                L  L + +   + L         N   L+ SSN   SL     SL          
Sbjct: 274 ELPQSLTFLDVSENIFSGL----SELPPNLYYLNASSNEIRSLCDLPPSL---------- 319

Query: 568 KQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL 627
               E    +   +  +    +   L  L  S N L   +P    NL   + L++ +N L
Sbjct: 320 ----EELNVSNNKLIEL--PALPPRLERLIASFNHL-AEVPELPQNL---KQLHVEYNPL 369

Query: 628 TGL------------------IPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFS 669
                                +P    NLK    L +  N L  + P     ++ L +  
Sbjct: 370 REFPDIPESVEDLRMNSHLAEVPELPQNLKQ---LHVETNPLR-EFPDIPESVEDLRM-- 423

Query: 670 VAYNNLSGEIPEW 682
              +    +  E+
Sbjct: 424 --NSERVVDPYEF 434

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  124 bits (314), Expect = 2e-30
 Identities = 98/470 (20%), Positives = 161/470 (34%), Gaps = 103/470 (21%)

Query: 224 NTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISM 283
           + +  +L L N  L+    LP      L  L  S N+    +P      L SL+  N ++
Sbjct: 70  DRQAHELELNNLGLS---SLP-ELPPHLESLVASCNSLT-ELPELPQS-LKSLLVDNNNL 123

Query: 284 NALDSSIPS---------------SFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFL 328
            AL    P                   N +FL+I+D+ NN L  ++P+       +LEF+
Sbjct: 124 KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPP----SLEFI 178

Query: 329 ALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIP 388
           A  NN L+        NL  L ++  + N L+ ++P       SLE +   NN L     
Sbjct: 179 AAGNNQLEE--LPELQNLPFLTAIYADNNSLK-KLPDLPL---SLESIVAGNNILE--EL 230

Query: 389 RWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPL-SIEQV 447
             L NL  L  I    N L+  +P       SL+ L++ DN ++  LP     L  ++  
Sbjct: 231 PELQNLPFLTTIYADNNLLKT-LPDLPP---SLEALNVRDNYLT-DLPELPQSLTFLDVS 285

Query: 448 HLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEV 507
               + L             +L  L+ S N +  S+    D    L  L + +N L  E+
Sbjct: 286 ENIFSGLSELPP--------NLYYLNASSNEIR-SLC---DLPPSLEELNVSNNKLI-EL 332

Query: 508 PVQLCELNQLQLLDLSNNNLHGPIPPCFDN-TTLHESSNNSYSLKPFETSLVMDSMMIPA 566
           P       +L+ L  S N+L   +P    N   LH   N          S+         
Sbjct: 333 PALPP---RLERLIASFNHLAE-VPELPQNLKQLHVEYNPLREFPDIPESVE-------- 380

Query: 567 EKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN 626
                                         DL  N  +  +P    NL   + L++  N 
Sbjct: 381 ------------------------------DLRMNSHLAEVPELPQNL---KQLHVETNP 407

Query: 627 LTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLS 676
           L    P    +++    L ++  ++             L      +++  
Sbjct: 408 LREF-PDIPESVED---LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  103 bits (259), Expect = 2e-23
 Identities = 60/343 (17%), Positives = 112/343 (32%), Gaps = 69/343 (20%)

Query: 342 RNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHII 401
           RN + T L+      ++L  E+P       S    Y   +      P   G    +    
Sbjct: 6   RNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 402 MPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRG 461
           + +           C       L++++  +S SLP    P  +E +  S N L  +L   
Sbjct: 65  LRD-----------CLDRQAHELELNNLGLS-SLPEL--PPHLESLVASCNSLT-ELPEL 109

Query: 462 TFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLD 521
                 SL+  + +   L+   P        L +L + +N LE ++P +L   + L+++D
Sbjct: 110 -PQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLE-KLP-ELQNSSFLKIID 159

Query: 522 LSNNNLHGPIPPCFDN-TTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKN 580
           + NN+L   +P    +   +   +N    L   +                          
Sbjct: 160 VDNNSLKK-LPDLPPSLEFIAAGNNQLEELPELQN------------------------- 193

Query: 581 IAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKH 640
                    L  L+ +    N L   +P    +L   +++   +N L         NL  
Sbjct: 194 ---------LPFLTAIYADNNSLK-KLPDLPLSL---ESIVAGNNILE--ELPELQNLPF 238

Query: 641 IESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWT 683
           + ++    N L   +P     L+ L V      +L       T
Sbjct: 239 LTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQSLT 280

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 81.2 bits (201), Expect = 3e-16
 Identities = 57/294 (19%), Positives = 101/294 (34%), Gaps = 66/294 (22%)

Query: 388 PRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQV 447
           PR + N   L+  +   ++L   +PV    + S      + +    + P    P + EQ 
Sbjct: 5   PRNVSNTF-LQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAP----PGNGEQR 58

Query: 448 HLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEV 507
            ++ + L   L R           L+L+   L+ S+P   +    L  L+   N+L  E+
Sbjct: 59  EMAVSRLRDCLDR-------QAHELELNNLGLS-SLP---ELPPHLESLVASCNSLT-EL 106

Query: 508 PVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAE 567
           P     L  L + + +   L   +PP      L  S+N    L   +             
Sbjct: 107 PELPQSLKSLLVDNNNLKALSD-LPPLL--EYLGVSNNQLEKLPELQN------------ 151

Query: 568 KQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL 627
                                  S L  +D+  N L   +P    +L   + +   +N L
Sbjct: 152 ----------------------SSFLKIIDVDNNSLK-KLPDLPPSL---EFIAAGNNQL 185

Query: 628 TGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPE 681
             L      NL  + ++    N L  K+P   + L+++       N L  E+PE
Sbjct: 186 EEL--PELQNLPFLTAIYADNNSLK-KLPDLPLSLESI---VAGNNILE-ELPE 232

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.9 bits (99), Expect = 8e-04
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 606 HIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTL 665
            I P+  + T +Q      +NLT + P    N+K       ++++     P    E + +
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNLTEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 666 AV 667
           AV
Sbjct: 61  AV 62

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  138 bits (349), Expect = 2e-34
 Identities = 86/384 (22%), Positives = 139/384 (36%), Gaps = 55/384 (14%)

Query: 273 LPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSN 332
                  +I M   D         +N  +I+   N+ +  ++P  L  S   +E L L++
Sbjct: 26  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLND 84

Query: 333 NNLK---GHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPR 389
             ++    + F+       ++ L +  N +    P        L  L L  N LS     
Sbjct: 85  LQIEEIDTYAFA---YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 141

Query: 390 WLGNLTGLKHIIMPENHLEGPIPVG-FCQLYSLQILDISDNNISGSLPSCFHPLSIEQVH 448
              N   L  + M  N+LE  I    F    SLQ L +S N ++    S    L     +
Sbjct: 142 IFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL--FHAN 198

Query: 449 LSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVP 508
           +S N+L       T     ++  LD S+N +N  +        +L+ L L HNNL  +  
Sbjct: 199 VSYNLLS------TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLT-DTA 248

Query: 509 VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEK 568
             L     L  +DLS N L   +   F              L      L + +  +    
Sbjct: 249 W-LLNYPGLVEVDLSYNELEKIMYHPFVKMQ---------RL----ERLYISNNRL---V 291

Query: 569 QIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT 628
            ++   +              +  L  LDLS N L+ H+        R++ L L HN++ 
Sbjct: 292 ALNLYGQP-------------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337

Query: 629 GLIPSTFSNLKHIESLDLSYNKLN 652
            L  ST   LK+   L LS+N  +
Sbjct: 338 TLKLSTHHTLKN---LTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  132 bits (333), Expect = 2e-32
 Identities = 82/458 (17%), Positives = 162/458 (35%), Gaps = 45/458 (9%)

Query: 202 LEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNF 261
            + V   + +   + P  LL++  ++  L L +  +             ++ L +  N  
Sbjct: 53  QKIVTFKN-STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 111

Query: 262 QGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVS 321
           + ++P  +   +P L    +  N L S     F N   L  L +SNN L   I +    +
Sbjct: 112 R-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQA 169

Query: 322 CVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNN 381
             +L+ L LS+N L     S    + +L    +  N L      +L+   ++E L  ++N
Sbjct: 170 TTSLQNLQLSSNRLTHVDLS---LIPSLFHANVSYNLL-----STLAIPIAVEELDASHN 221

Query: 382 SLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHP 441
           S++  +         L  + +  N+L             L  +D+S N +   +   F  
Sbjct: 222 SIN-VVRG--PVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVK 276

Query: 442 L-SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGH 500
           +  +E++++S N L             +L  LDLS+N L   +        +L +L L H
Sbjct: 277 MQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH 333

Query: 501 NNLEGEVPVQLCELNQLQLLDLSNNNLHG-PIPPCFDNTTLHESSNNSYSLKPFETSLVM 559
           N++     ++L   + L+ L LS+N+     +   F N       +     K        
Sbjct: 334 NSIV---TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDY----- 385

Query: 560 DSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQT 619
                              K     Y  ++L  ++   +        +    G  +   T
Sbjct: 386 -----------QLEHGLCCKESDKPYLDRLLQYIALTSVVEK-----VQRAQGRCSATDT 429

Query: 620 LNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH 657
           +N   +    +       L+  E L+   N+L  ++  
Sbjct: 430 INSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQ 467

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  132 bits (333), Expect = 2e-32
 Identities = 66/384 (17%), Positives = 128/384 (33%), Gaps = 59/384 (15%)

Query: 305 LSNNQLTGEIPEHLAVSCVN--------LEFLALSNNNLKGHMFSRNFNLTNLRSLQLEG 356
           +   Q     P      C++           + +       +    +  L N + +  + 
Sbjct: 1   VGGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN 60

Query: 357 NHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG-F 415
           + +       L     +E L LN+  +             ++ + M  N +   +P   F
Sbjct: 61  STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVF 119

Query: 416 CQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDL 474
             +  L +L +  N++S      FH    +  + +S N L  +++  TF   +SL  L L
Sbjct: 120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQL 178

Query: 475 SYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPC 534
           S NRL   +   +  +  L H  + +N L       L     ++ LD S+N+++    P 
Sbjct: 179 SSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPV 230

Query: 535 FDN-TTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLL 593
               T L    NN                                              L
Sbjct: 231 NVELTILKLQHNNLTDTAWLLN----------------------------------YPGL 256

Query: 594 SGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 652
             +DLS N+ +  I       + R++ L +S+N L   +      +  ++ LDLS+N L 
Sbjct: 257 VEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL 314

Query: 653 GKIPHQLVELKTLAVFSVAYNNLS 676
             +     +   L    + +N++ 
Sbjct: 315 -HVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  126 bits (318), Expect = 2e-30
 Identities = 105/660 (15%), Positives = 204/660 (30%), Gaps = 101/660 (15%)

Query: 66  LDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSI 125
           +D  L       +++ID         +    + + +I+   ++ +   + ++ L     +
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 77

Query: 126 EELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSG 185
           E L L++   +  I          ++      N I+                    L   
Sbjct: 78  ELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIR-------------------YLPPH 117

Query: 186 YGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPI 245
               V           L  + L   N     P  +  N  KL  L + N++L        
Sbjct: 118 VFQNVP---------LLTVLVLER-NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 167

Query: 246 HSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDL 305
            +   L+ L +S+N    H+ +    ++PSL   N+S N L     S+      ++ LD 
Sbjct: 168 QATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLL-----STLAIPIAVEELDA 218

Query: 306 SNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQ 365
           S+N +   +   +    V L  L L +NNL     +   N   L  + L  N LE  +  
Sbjct: 219 SHNSIN-VVRGPV---NVELTILKLQHNNLT--DTAWLLNYPGLVEVDLSYNELEKIMYH 272

Query: 366 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILD 425
              K   LE LY++NN L   +  +   +  LK + +  NHL   +     Q   L+ L 
Sbjct: 273 PFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLY 330

Query: 426 ISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPN 485
           +  N+I                          LK  T     +L  L LS+N  + +   
Sbjct: 331 LDHNSIV------------------------TLKLSTH---HTLKNLTLSHNDWDCNSLR 363

Query: 486 WVDGLSQLSHLILGHNNLEGEVPVQLC----------ELNQLQLLDLSNNNLHGPIPPCF 535
            +     ++   +   +   ++  QL                 L  ++  ++   +    
Sbjct: 364 AL--FRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQ 421

Query: 536 DNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSG 595
              +  ++ N+  SL  + T      +    + +   N            Q +   LL G
Sbjct: 422 GRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQG 481

Query: 596 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN-KLNGK 654
           L                  T ++   L  + L     +      H++        +   +
Sbjct: 482 LHAE-------------IDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQAR 528

Query: 655 IPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICRSPATM 714
                 + K           L  ++    A+ A   + +      +  L     R+P T 
Sbjct: 529 RTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTR 588

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  105 bits (262), Expect = 1e-23
 Identities = 86/502 (17%), Positives = 161/502 (32%), Gaps = 99/502 (19%)

Query: 43  ESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRI 102
           +S   ++ L+++D  +      I          +Q+LY+  N +R   P    N+  L +
Sbjct: 72  DSFRQVELLNLNDLQI----EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127

Query: 103 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKA 162
           L +  N L+ S+      +   +  L +SNN+ +  I  +     + L+    ++N +  
Sbjct: 128 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLT- 184

Query: 163 EITESHSLTAPNF-QLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWL- 220
                  +       L   ++S                                  N L 
Sbjct: 185 ------HVDLSLIPSLFHANVSY---------------------------------NLLS 205

Query: 221 -LENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISF 279
            L     + +L   ++S+     +    +  L  L + +NN                   
Sbjct: 206 TLAIPIAVEELDASHNSIN---VVRGPVNVELTILKLQHNNL------------------ 244

Query: 280 NISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHM 339
                   +       N   L  +DLS N+L  +I  H  V    LE L +SNN L    
Sbjct: 245 --------TDTA-WLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV--A 292

Query: 340 FSRNF-NLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLK 398
            +     +  L+ L L  NHL   + ++  +   LE LYL++NS+   +   L     LK
Sbjct: 293 LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLK 348

Query: 399 HIIMPENHLEG-PIPVGFCQLYSLQILDISDN-----NISGSLPSCFHPLSIEQVHLSKN 452
           ++ +  N  +   +   F  +    + D   +      +   L             L   
Sbjct: 349 NLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYI 408

Query: 453 MLHGQLKRG--TFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPV- 509
            L   +++       CS+  T++   +  +         L     L    N L  EV   
Sbjct: 409 ALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQL 468

Query: 510 ---QLCELNQLQLLDLSNNNLH 528
              Q+ +   LQ L    +   
Sbjct: 469 TNEQIQQEQLLQGLHAEIDTNL 490

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  130 bits (328), Expect = 2e-33
 Identities = 60/296 (20%), Positives = 111/296 (37%), Gaps = 29/296 (9%)

Query: 251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQL 310
           LR +  S+   +  +P    D+ P     ++  N +       F N+  L  L L NN++
Sbjct: 33  LRVVQCSDLGLE-KVP---KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 311 TGEIPEHLAVSCVNLEFLALSNNNLK---GHMFSRNFNLTNLRSLQLEGNHLEGEIPQSL 367
           + +I        V LE L LS N LK     M         L+ L++  N +        
Sbjct: 89  S-KISPGAFAPLVKLERLYLSKNQLKELPEKMPK------TLQELRVHENEITKVRKSVF 141

Query: 368 SKCSSLEGLYLNNNSLSGKI--PRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILD 425
           +  + +  + L  N L            +  L +I + + ++   IP G     SL  L 
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELH 198

Query: 426 ISDNNISGSLPSCFHPL-SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIP 484
           +  N I+    +    L ++ ++ LS N +   +  G+  +   L  L L+ N+L   +P
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVP 256

Query: 485 NWVDGLSQLSHLILGHNNLEG------EVPVQLCELNQLQLLDLSNNNL-HGPIPP 533
             +     +  + L +NN+          P    +      + L +N + +  I P
Sbjct: 257 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  117 bits (295), Expect = 7e-29
 Identities = 73/371 (19%), Positives = 120/371 (32%), Gaps = 91/371 (24%)

Query: 299 FLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNN---LKGHMFSRNFNLTNLRSLQLE 355
            L+++  S+  L  ++P+ L     +   L L NN    +K   F    NL NL +L L 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPP---DTALLDLQNNKITEIKDGDFK---NLKNLHTLILI 84

Query: 356 GNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGF 415
            N +    P + +    LE LYL+ N L                           +P   
Sbjct: 85  NNKISKISPGAFAPLVKLERLYLSKNQLKE-------------------------LPEKM 119

Query: 416 CQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLH-GQLKRGTFFHCSSLVTLD 473
               +LQ L + +N I+    S F+ L  +  V L  N L    ++ G F     L  + 
Sbjct: 120 --PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177

Query: 474 LSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPP 533
           ++   +  +IP  +     L+ L L  N +       L  LN L  L LS N++   +  
Sbjct: 178 IADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDN 233

Query: 534 -CFDN----TTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGK 588
               N      LH ++N           L           ++                  
Sbjct: 234 GSLANTPHLRELHLNNNK----------L----------VKVPGGL-------------A 260

Query: 589 VLSLLSGLDLSCNKLIGHIPPQ-------IGNLTRIQTLNLSHNNL--TGLIPSTFSNLK 639
               +  + L  N  I  I                   ++L  N +    + PSTF  + 
Sbjct: 261 DHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 319

Query: 640 HIESLDLSYNK 650
              ++ L   K
Sbjct: 320 VRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  111 bits (280), Expect = 6e-27
 Identities = 60/312 (19%), Positives = 115/312 (36%), Gaps = 46/312 (14%)

Query: 348 NLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHL 407
           +LR +Q     LE ++P+ L        L L NN ++        NL  L  +I+  N +
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 408 EGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCS 467
               P  F  L  L+ L +S N +   LP    P +++++ + +N +  ++++  F   +
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELPE-KMPKTLQELRVHENEIT-KVRKSVFNGLN 145

Query: 468 SLVTLDLSYNRLNGSI--PNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNN 525
            ++ ++L  N L  S        G+ +LS++ +   N+   +P  L     L  L L  N
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGN 202

Query: 526 NLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIY 585
            +                     +L      L +    I     +               
Sbjct: 203 KITKVDAASLKGLN---------NLA----KLGLSFNSI---SAVDNG-SLAN------- 238

Query: 586 QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTF------SNLK 639
                  L  L L+ NKL+  +P  + +   IQ + L +NN++ +  + F      +   
Sbjct: 239 ----TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293

Query: 640 HIESLDLSYNKL 651
               + L  N +
Sbjct: 294 SYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 93.5 bits (233), Expect = 7e-21
 Identities = 63/268 (23%), Positives = 112/268 (41%), Gaps = 34/268 (12%)

Query: 420 SLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRL 479
            L+++  SD  +   +P    P     + L  N +  ++K G F +  +L TL L  N++
Sbjct: 32  HLRVVQCSDLGLE-KVPKDL-PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI 88

Query: 480 NGSIPNWV-DGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPP-CFDN 537
           +  I       L +L  L L  N L+ E+P ++     LQ L +  N +   +    F+ 
Sbjct: 89  S-KISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITK-VRKSVFNG 143

Query: 538 ----TTLHESSNNSYSLKPFETSLVMDSMMIPAEK----QIHENFEFTTKNIAYIYQGKV 589
                 +   +N      P ++S + +      +K    +I +       NI  I    +
Sbjct: 144 LNQMIVVELGTN------PLKSSGIENGAFQGMKKLSYIRIADT------NITTI-PQGL 190

Query: 590 LSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSY 648
              L+ L L  NK I  +       L  +  L LS N+++ +   + +N  H+  L L+ 
Sbjct: 191 PPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249

Query: 649 NKLNGKIPHQLVELKTLAVFSVAYNNLS 676
           NKL  K+P  L + K + V  +  NN+S
Sbjct: 250 NKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 86.6 bits (215), Expect = 2e-18
 Identities = 50/296 (16%), Positives = 101/296 (34%), Gaps = 32/296 (10%)

Query: 75  HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH 134
               L + NN +         N+ +L  L + +N+++  IS      L  +E L LS N 
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQ 111

Query: 135 F-QIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNF----QLQALSLSS-GYGD 188
             ++P   E +     L+      NEI         +    F    Q+  + L +     
Sbjct: 112 LKELP---EKMP--KTLQELRVHENEIT-------KVRKSVFNGLNQMIVVELGTNPLKS 159

Query: 189 GVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSH 248
                        L  +R++        P  L  +   L +L+L  + +T      +   
Sbjct: 160 SGIENGAFQGMKKLSYIRIAD-TNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGL 215

Query: 249 RWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNN 308
             L  L +S N+    +        P L   +++ N L   +P    +  ++Q++ L NN
Sbjct: 216 NNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNN 273

Query: 309 QLT-----GEIPEHLAVSCVNLEFLALSNNNLKGHMFSRN--FNLTNLRSLQLEGN 357
            ++        P        +   ++L +N ++      +    +    ++QL   
Sbjct: 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 593 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 652
           L  +  S   L   +P  +        L+L +N +T +    F NLK++ +L L  NK++
Sbjct: 33  LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 653 GKIPHQLVELKTLAVFSVAYNNLSGEIPE 681
              P     L  L    ++ N L  E+PE
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLK-ELPE 117

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 11/122 (9%)

Query: 46  PSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDV 105
           PSL  L +  + +    +++    L  L +L +L +  N +       LAN   LR L +
Sbjct: 192 PSLTELHLDGNKI----TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247

Query: 106 SSNQLTGSISSSPLVHLTSIEELMLSNNHFQ-IPIS----LEPLFNHSRLKIFDAANNEI 160
           ++N+L   +    L     I+ + L NN+   I  +           +        +N +
Sbjct: 248 NNNKLV-KVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

Query: 161 KA 162
           + 
Sbjct: 306 QY 307

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  129 bits (327), Expect = 7e-32
 Identities = 98/474 (20%), Positives = 164/474 (34%), Gaps = 34/474 (7%)

Query: 75  HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH 134
               L I  N +       + +++ LRIL +S N++   +  S       +E L LS+N 
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNK 80

Query: 135 FQIPISLEPLFNHSRLKIFDAANNEIKA--EITESHSLTAPNFQLQALSLSSGYGDGVTF 192
               IS  P  N   LK  D + N   A     E  +++    QL+ L LS+ + +  + 
Sbjct: 81  LVK-ISCHPTVN---LKHLDLSFNAFDALPICKEFGNMS----QLKFLGLSTTHLEKSSV 132

Query: 193 PKFLYHQHDLEDVRLSHVNMDGEFPNWLLE-NNTKLRQLYLVNDSLTGPFRLPIHSHRWL 251
               +       + L     + E P  L + N   L  ++  N        + + +   L
Sbjct: 133 LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192

Query: 252 RFLDVSNNNFQGHIP--------VEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQIL 303
              ++                  ++    L +L   NI                  +   
Sbjct: 193 ELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252

Query: 304 DLSNNQLTG----EIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHL 359
            +SN +L G       ++   S   L    + ++             +N+       +  
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312

Query: 360 EGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLE--GPIPVGFCQ 417
                   SK S    L  +NN L+  +    G+LT L+ +I+  N L+    I     Q
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372

Query: 418 LYSLQILDISDNNISGSLP--SCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVT-LDL 474
           + SLQ LDIS N++S       C    S+  +++S N     L    F      +  LDL
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN----ILTDTIFRCLPPRIKVLDL 428

Query: 475 SYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLH 528
             N++  SIP  V  L  L  L +  N L+         L  LQ + L  N   
Sbjct: 429 HSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  117 bits (294), Expect = 1e-27
 Identities = 82/459 (17%), Positives = 149/459 (32%), Gaps = 67/459 (14%)

Query: 217 PNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSL 276
              + + N +L  L L ++ L     +  H    L+ LD+S N F      +    +  L
Sbjct: 61  DISVFKFNQELEYLDLSHNKLVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQL 117

Query: 277 ISFNISMNALDSSIPSSFGNMNFLQI-LDLSNNQLTGEIPEHLA-VSCVNLEFLALSNNN 334
               +S   L+ S      ++N  ++ L L       E PE L   +  +L  +  +N  
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177

Query: 335 LKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEG------LYLNNNSLSGKIP 388
               +      + NL    ++    + +    LS  + L+       L LNN   +    
Sbjct: 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF 237

Query: 389 R------WLGNLTGL--KHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFH 440
                  W   +      ++ +               L +L I  +  +         + 
Sbjct: 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE 297

Query: 441 PLS---IEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLI 497
             S   I+   +S       +        S  + LD S N L  ++      L++L  LI
Sbjct: 298 IFSNMNIKNFTVSGT---RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354

Query: 498 LGHNNLE--GEVPVQLCELNQLQLLDLSNNNLHGPIPPC-FDN----TTLHESSNNSYSL 550
           L  N L+   ++     ++  LQ LD+S N++                +L+ SSN     
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI---- 410

Query: 551 KPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQ 610
                                         +       +   +  LDL  NK+   IP Q
Sbjct: 411 ------------------------------LTDTIFRCLPPRIKVLDLHSNKI-KSIPKQ 439

Query: 611 IGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 649
           +  L  +Q LN++ N L  +    F  L  ++ + L  N
Sbjct: 440 VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  110 bits (276), Expect = 2e-25
 Identities = 74/436 (16%), Positives = 147/436 (33%), Gaps = 54/436 (12%)

Query: 253 FLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTG 312
            +D S N    H+P    D+       NIS N +     S   +++ L+IL +S+N++  
Sbjct: 4   LVDRSKNGLI-HVP---KDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ- 58

Query: 313 EIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQS--LSKC 370
            +   +      LE+L LS+N L            NL+ L L  N  +  +P        
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLVKISCHP---TVNLKHLDLSFNAFD-ALPICKEFGNM 114

Query: 371 SSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNN 430
           S L+ L L+   L       + +L   K +++                  LQ  +    +
Sbjct: 115 SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPE-----GLQDFNTESLH 169

Query: 431 ISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGL 490
           I       FH +    V    N+    +K     +  S     L+  + N  + N     
Sbjct: 170 IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229

Query: 491 SQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSL 550
            + +              +QL     +    +SN  L G +     + +       S   
Sbjct: 230 IETTWNSFIR-------ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI-- 280

Query: 551 KPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQ 610
                             Q+  +     ++  Y    ++ S ++  + + +         
Sbjct: 281 -----------------HQVVSDVFGFPQSYIY----EIFSNMNIKNFTVSGTRMVHMLC 319

Query: 611 IGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN-----GKIPHQLVELKTL 665
              ++    L+ S+N LT  +     +L  +E+L L  N+L       ++  Q+  L+ L
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL 379

Query: 666 AVFSVAYNNLSGEIPE 681
               ++ N++S +  +
Sbjct: 380 ---DISQNSVSYDEKK 392

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 98.8 bits (246), Expect = 9e-22
 Identities = 79/452 (17%), Positives = 153/452 (33%), Gaps = 41/452 (9%)

Query: 225 TKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMN 284
            K   L +  + ++  +   I S   LR L +S+N  Q ++ + +      L   ++S N
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHN 79

Query: 285 ALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNF 344
            L   I         L+ LDLS N            +   L+FL LS  +L+        
Sbjct: 80  KL-VKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 345 NLTNLR-SLQLEGNHLEGEIPQSLSKC--SSLEGLYLNNNSLSGKIPRWLGNLTGLKHII 401
           +L   +  L L   + E E P+ L      SL  ++  N      +   +  +  L+   
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 402 MPENH-----------LEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLS 450
           +               L            +L  ++ + N+    +       ++    +S
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI-RILQLVWHTTVWYFSIS 255

Query: 451 KNMLHGQLKRGTFFHCS----SLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGE 506
              L GQL    F +      +L    +  +          +  S ++      +     
Sbjct: 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMV 315

Query: 507 VPVQLCELNQLQLLDLSNNNLHGPIPPCFDN----TTLHESSNNSYSLKPFETSLVMDSM 562
             +   +++    LD SNN L   +     +     TL    N    L     + +   M
Sbjct: 316 HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK--IAEMTTQM 373

Query: 563 MIPAEKQIHENFEFTTKNIAYIYQGKV---LSLLSGLDLSCNKLIGHIPPQIGNLTRIQT 619
               +  I +N      +++Y  +         L  L++S N L   I   +    RI+ 
Sbjct: 374 KSLQQLDISQN------SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKV 425

Query: 620 LNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL 651
           L+L  N +  + P     L+ ++ L+++ N+L
Sbjct: 426 LDLHSNKIKSI-PKQVVKLEALQELNVASNQL 456

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 91.8 bits (228), Expect = 1e-19
 Identities = 65/402 (16%), Positives = 133/402 (33%), Gaps = 33/402 (8%)

Query: 9   LVRGQGFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQ 68
           L   + F +   L  L +         S   + + S+  + +L++S   L    +    +
Sbjct: 105 LPICKEFGNMSQLKFLGL---------STTHLEKSSVLPIAHLNISKVLLVLGETYGEKE 155

Query: 69  GLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 128
               L       +            + +++   + ++  + +   +  +   +  SI   
Sbjct: 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAK 215

Query: 129 MLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSS-GYG 187
           + +N               + ++    +   I   +  +         +   S+S+    
Sbjct: 216 LQTNPKLS-------NLTLNNIETTWNSFIRILQLVWHTT--------VWYFSISNVKLQ 260

Query: 188 DGVTFPKFLYHQHDLEDVRLSHVNMD--GEFPNWLLENNTKLRQLYLVNDSLTGPFRLPI 245
             + F  F Y    L+ + +  V  D  G   +++ E  + +               L  
Sbjct: 261 GQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP 320

Query: 246 HSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDS--SIPSSFGNMNFLQIL 303
                   LD SNN        E    L  L +  + MN L     I      M  LQ L
Sbjct: 321 SKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL 379

Query: 304 DLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEI 363
           D+S N ++ +  +       +L  L +S+N L   +F        ++ L L  N ++  I
Sbjct: 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC--LPPRIKVLDLHSNKIK-SI 436

Query: 364 PQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPEN 405
           P+ + K  +L+ L + +N L          LT L+ I +  N
Sbjct: 437 PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  128 bits (324), Expect = 3e-31
 Identities = 72/324 (22%), Positives = 110/324 (33%), Gaps = 46/324 (14%)

Query: 224 NTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISM 283
           N     L +    LT    LP      +  L + +NN    +P         L +  +S 
Sbjct: 39  NNGNAVLNVGESGLT---TLPDCLPAHITTLVIPDNNLT-SLPALPP----ELRTLEVSG 90

Query: 284 NALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRN 343
           N L +S+P     +  L I       L              L  L +  N L     S  
Sbjct: 91  NQL-TSLPVLPPGLLELSIFSNPLTHLPALPS--------GLCKLWIFGNQLT----SLP 137

Query: 344 FNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMP 403
                L+ L +  N L   +P   S    L  L+  NN L+  +P     L  L    + 
Sbjct: 138 VLPPGLQELSVSDNQLA-SLPALPS---ELCKLWAYNNQLT-SLPMLPSGLQEL---SVS 189

Query: 404 ENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTF 463
           +N L   +P    +L     L   +N ++ SLP+   P  ++++ +S N L         
Sbjct: 190 DNQLAS-LPTLPSEL---YKLWAYNNRLT-SLPA--LPSGLKELIVSGNRL-----TSLP 237

Query: 464 FHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLS 523
              S L  L +S NRL  S+P      S L  L +  N L   +P  L  L+    ++L 
Sbjct: 238 VLPSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292

Query: 524 NNNLHGPIPPCFDNTTLHESSNNS 547
            N L           T     +  
Sbjct: 293 GNPLSERTLQALREITSAPGYSGP 316

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  126 bits (319), Expect = 2e-30
 Identities = 84/399 (21%), Positives = 130/399 (32%), Gaps = 77/399 (19%)

Query: 300 LQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHL 359
             +L++  + LT  +P+ L     ++  L + +NNL     S       LR+L++ GN L
Sbjct: 42  NAVLNVGESGLT-TLPDCL---PAHITTLVIPDNNLT----SLPALPPELRTLEVSGNQL 93

Query: 360 EGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLY 419
              +P        L         L    P     L  L    +  N L   +PV      
Sbjct: 94  T-SLPVLPPGLLELSIFSNPLTHL----PALPSGLCKLW---IFGNQLTS-LPV---LPP 141

Query: 420 SLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRL 479
            LQ L +SDN ++ SLP+    L   ++    N L   L        S L  L +S N+L
Sbjct: 142 GLQELSVSDNQLA-SLPALPSEL--CKLWAYNNQLT-SLPML----PSGLQELSVSDNQL 193

Query: 480 NGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDN-T 538
             S+P      S+L  L   +N L   +P        L+ L +S N L   +P       
Sbjct: 194 A-SLP---TLPSELYKLWAYNNRLT-SLPALPS---GLKELIVSGNRLTS-LPVLPSELK 244

Query: 539 TLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDL 598
            L  S N   SL              P                         S L  L +
Sbjct: 245 ELMVSGNRLTSL--------------PML----------------------PSGLLSLSV 268

Query: 599 SCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQ 658
             N+L   +P  + +L+   T+NL  N L+         +           + +      
Sbjct: 269 YRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASA 327

Query: 659 LVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGN 697
             E + L     A + L        A    ++    E N
Sbjct: 328 PRETRALH--LAAADWLVPAREGEPAPADRWHMFGQEDN 364

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  116 bits (292), Expect = 4e-27
 Identities = 80/379 (21%), Positives = 131/379 (34%), Gaps = 57/379 (15%)

Query: 71  CSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELML 130
           C       L +  + L  +LP CL     +  L +  N LT S+ +        +  L +
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL----PPELRTLEV 88

Query: 131 SNNHFQ-IPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDG 189
           S N    +P+    L     L IF      + A  +    L     QL +L +       
Sbjct: 89  SGNQLTSLPVLPPGL---LELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPP---- 141

Query: 190 VTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHR 249
                       L+++ +S  N     P       ++L +L+  N+ LT    LP+    
Sbjct: 142 -----------GLQELSVSD-NQLASLPALP----SELCKLWAYNNQLT---SLPMLPSG 182

Query: 250 WLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQ 309
            L+ L VS+N     +P    + L  L ++N  + +L +           L+ L +S N+
Sbjct: 183 -LQELSVSDNQLA-SLPTLPSE-LYKLWAYNNRLTSLPALPSG-------LKELIVSGNR 232

Query: 310 LTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSK 369
           LT  +P   +     L+ L +S N L     S     + L SL +  N L   +P+SL  
Sbjct: 233 LT-SLPVLPS----ELKELMVSGNRLT----SLPMLPSGLLSLSVYRNQLT-RLPESLIH 282

Query: 370 CSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGF--CQLYSLQILDIS 427
            SS   + L  N LS +  + L  +T       P    +          +   L   D  
Sbjct: 283 LSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWL 342

Query: 428 DNNISGSLPSCFHPLSIEQ 446
                G            Q
Sbjct: 343 VPAREGEPAPADRWHMFGQ 361

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 90.7 bits (225), Expect = 5e-19
 Identities = 65/276 (23%), Positives = 98/276 (35%), Gaps = 62/276 (22%)

Query: 416 CQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFF--HCSSLVTLD 473
           C      +L++ ++ ++ +LP C  P  I  + +  N L       T        L TL+
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCL-PAHITTLVIPDNNL-------TSLPALPPELRTLE 87

Query: 474 LSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPP 533
           +S N+L  S+P    GL +LS       +L           + L  L +  N L   +P 
Sbjct: 88  VSGNQLT-SLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTS-LPV 138

Query: 534 CFDN-TTLHESSNNSYSLKPF---ETSLVMDSMMI---PAEKQIHENFEFTTKNIAYIYQ 586
                  L  S N   SL         L   +  +   P                     
Sbjct: 139 LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPML------------------- 179

Query: 587 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDL 646
               S L  L +S N+L   +P     L +   L   +N LT L P+  S LK    L +
Sbjct: 180 ---PSGLQELSVSDNQLA-SLPTLPSELYK---LWAYNNRLTSL-PALPSGLK---ELIV 228

Query: 647 SYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEW 682
           S N+L   +P    ELK L    V+ N L+  +P  
Sbjct: 229 SGNRLTS-LPVLPSELKEL---MVSGNRLT-SLPML 259

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 88.0 bits (218), Expect = 4e-18
 Identities = 63/368 (17%), Positives = 111/368 (30%), Gaps = 65/368 (17%)

Query: 18  FKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQ 77
              +  L        +  + L  +    P L+ L +S      N    L      L+ L 
Sbjct: 60  PAHITTLV-------IPDNNLTSLPALPPELRTLEVSG-----NQLTSLPVLPPGLLELS 107

Query: 78  ELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQI 137
                   L           + L  L +  NQLT S+          ++EL +S+N    
Sbjct: 108 IFSNPLTHLPALP-------SGLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLA- 154

Query: 138 PISLEPLFNHSRLKIFDAANNEIK---AEITESHSLTAPNFQLQALSLSSGYGDGVTFPK 194
             SL  L   S L    A NN++       +    L+  + QL +L              
Sbjct: 155 --SLPALP--SELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPS--------- 201

Query: 195 FLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFL 254
                 +L  +   + N     P       + L++L +  + LT    LP      L+ L
Sbjct: 202 ------ELYKLWAYN-NRLTSLPALP----SGLKELIVSGNRLT---SLP-VLPSELKEL 246

Query: 255 DVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEI 314
            VS N     +P+        L+S ++  N L + +P S  +++    ++L  N L+ E 
Sbjct: 247 MVSGNRLT-SLPMLPS----GLLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNPLS-ER 299

Query: 315 PEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLE 374
                    +    +           S       L       + L        +      
Sbjct: 300 TLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA--DWLVPAREGEPAPADRWH 357

Query: 375 GLYLNNNS 382
                +N+
Sbjct: 358 MFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 60.7 bits (147), Expect = 1e-09
 Identities = 35/179 (19%), Positives = 59/179 (32%), Gaps = 52/179 (29%)

Query: 509 VQLCELNQLQLLDLSNNNLHGPIPPCFDN--TTLHESSNNSYSLKPFETSLVMDSMMIPA 566
           ++ C  N   +L++  + L   +P C     TTL    NN  SL              PA
Sbjct: 34  MRACLNNGNAVLNVGESGLTT-LPDCLPAHITTLVIPDNNLTSL--------------PA 78

Query: 567 EKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN 626
                                     L  L++S N+L   +P     L  +   +    +
Sbjct: 79  L----------------------PPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTH 115

Query: 627 LTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQ 685
           L  L          +  L +  N+L   +P     L+ L   SV+ N L+  +P   ++
Sbjct: 116 LPALPSG-------LCKLWIFGNQLT-SLPVLPPGLQEL---SVSDNQLA-SLPALPSE 162

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  121 bits (306), Expect = 2e-30
 Identities = 59/297 (19%), Positives = 110/297 (37%), Gaps = 32/297 (10%)

Query: 251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQL 310
           LR +  S+   +  +P    +I P     ++  N +       F  +  L  L L NN++
Sbjct: 35  LRVVQCSDLGLK-AVPK---EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 311 TGEIPEHLAVSCVNLEFLALSNNNLK---GHMFSRNFNLTNLRSLQLEGNHLEGEIPQSL 367
           + +I E        L+ L +S N+L     ++ S      +L  L++  N +        
Sbjct: 91  S-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS------SLVELRIHDNRIRKVPKGVF 143

Query: 368 SKCSSLEGLYLNNNSLSGKI--PRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILD 425
           S   ++  + +  N L      P     L  L ++ + E  L G IP       +L  L 
Sbjct: 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTG-IPKDL--PETLNELH 199

Query: 426 ISDNNISGSLPSCFHPL-SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIP 484
           +  N I             + ++ L  N +   ++ G+     +L  L L  N+L+  +P
Sbjct: 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVP 257

Query: 485 NWVDGLSQLSHLILGHNNLEGEVPVQ-------LCELNQLQLLDLSNNNL-HGPIPP 533
             +  L  L  + L  NN+  +V V          +      + L NN + +  + P
Sbjct: 258 AGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  112 bits (282), Expect = 3e-27
 Identities = 69/368 (18%), Positives = 128/368 (34%), Gaps = 86/368 (23%)

Query: 299 FLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNN---LKGHMFSRNFNLTNLRSLQLE 355
            L+++  S+  L   +P+ ++    +   L L NN+   L+   F     L +L +L L 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISP---DTTLLDLQNNDISELRKDDFK---GLQHLYALVLV 86

Query: 356 GNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG- 414
            N +     ++ S    L+ LY++ N L  +IP      + L  + + +N +   +P G 
Sbjct: 87  NNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPP--NLPSSLVELRIHDNRIRK-VPKGV 142

Query: 415 FCQLYSLQILDISDNNISGSL--PSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTL 472
           F  L ++  +++  N +  S   P  F  L +  + +S+  L   + +       +L  L
Sbjct: 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLP---ETLNEL 198

Query: 473 DLSYNRLNGSIPNWV-DGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPI 531
            L +N++  +I        S+L  L LGHN +       L  L  L+ L L NN L   +
Sbjct: 199 HLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-V 256

Query: 532 PPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLS 591
           P    +                                                    L 
Sbjct: 257 PAGLPD----------------------------------------------------LK 264

Query: 592 LLSGLDLSCNKLIGHIPPQI-------GNLTRIQTLNLSHNNLT--GLIPSTFSNLKHIE 642
           LL  + L  N  I  +                   ++L +N +    + P+TF  +    
Sbjct: 265 LLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323

Query: 643 SLDLSYNK 650
           ++     K
Sbjct: 324 AIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  106 bits (267), Expect = 3e-25
 Identities = 68/315 (21%), Positives = 116/315 (36%), Gaps = 53/315 (16%)

Query: 348 NLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHL 407
           +LR +Q     L+  +P+ +S       L L NN +S         L  L  +++  N +
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 408 EGPIPVG-FCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHC 466
              I    F  L  LQ L IS N++   +P    P S+ ++ +  N +  ++ +G F   
Sbjct: 91  SK-IHEKAFSPLRKLQKLYISKNHLV-EIPP-NLPSSLVELRIHDNRIR-KVPKGVFSGL 146

Query: 467 SSLVTLDLSYNRLNGSI--PNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSN 524
            ++  +++  N L  S   P   DGL  L++L +    L   +P  L     L  L L +
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLT-GIPKDL--PETLNELHLDH 202

Query: 525 NNLHGPIPP-CFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHEN-FEFTTKNIA 582
           N +   I        +          L      L +    I   + I      F      
Sbjct: 203 NKIQA-IELEDLLRYS---------KL----YRLGLGHNQI---RMIENGSLSF------ 239

Query: 583 YIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLK--- 639
                  L  L  L L  NKL   +P  + +L  +Q + L  NN+T +  + F  +    
Sbjct: 240 -------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV 291

Query: 640 ---HIESLDLSYNKL 651
              +   + L  N +
Sbjct: 292 KRAYYNGISLFNNPV 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  103 bits (258), Expect = 4e-24
 Identities = 55/267 (20%), Positives = 101/267 (37%), Gaps = 18/267 (6%)

Query: 221 LENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFN 280
            +    L  L LVN+ ++          R L+ L +S N+    IP    ++  SL+   
Sbjct: 74  FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIP---PNLPSSLVELR 129

Query: 281 ISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMF 340
           I  N +       F  +  +  +++  N L     E  A   + L +L +S   L   + 
Sbjct: 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIP 188

Query: 341 SRNFNLTNLRSLQLEGNHLEGEIPQ-SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKH 399
                   L  L L+ N ++  I    L + S L  L L +N +       L  L  L+ 
Sbjct: 189 KDLP--ETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE 245

Query: 400 IIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPL-------SIEQVHLSKN 452
           + +  N L   +P G   L  LQ++ +  NNI+    + F P+           + L  N
Sbjct: 246 LHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN 304

Query: 453 ML-HGQLKRGTFFHCSSLVTLDLSYNR 478
            + + +++  TF   +  + +     +
Sbjct: 305 PVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 94.7 bits (236), Expect = 3e-21
 Identities = 57/266 (21%), Positives = 96/266 (36%), Gaps = 43/266 (16%)

Query: 420 SLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNR 478
              +LD+ +N+IS      F  L  +  + L  N +  ++    F     L  L +S N 
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNH 113

Query: 479 LNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNL-HGPIPP-CFD 536
           L   IP   +  S L  L +  N +          L  +  +++  N L +    P  FD
Sbjct: 114 LV-EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 537 NTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGL 596
              L+                            I E        +  I    +   L+ L
Sbjct: 171 GLKLNYLR-------------------------ISEA------KLTGI-PKDLPETLNEL 198

Query: 597 DLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 655
            L  NK I  I  +     +++  L L HN +  +   + S L  +  L L  NKL+ ++
Sbjct: 199 HLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RV 256

Query: 656 PHQLVELKTLAVFSVAYNNLSGEIPE 681
           P  L +LK L V  +  NN++ ++  
Sbjct: 257 PAGLPDLKLLQVVYLHTNNIT-KVGV 281

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 88.9 bits (221), Expect = 3e-19
 Identities = 53/367 (14%), Positives = 107/367 (29%), Gaps = 82/367 (22%)

Query: 75  HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH 134
           HL+ +   +  L+ ++P  ++      +LD+ +N ++  +       L  +  L+L NN 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNK 89

Query: 135 FQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPK 194
               I  +      +L+    + N +                     +            
Sbjct: 90  ISK-IHEKAFSPLRKLQKLYISKNHLV-------------------EIPPN-----LPSS 124

Query: 195 FLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFL 254
                  L ++R+   N   + P  +      +  + +  + L                 
Sbjct: 125 -------LVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLE--------------NS 162

Query: 255 DVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEI 314
                 F G            L    IS   L             L  L L +N++   I
Sbjct: 163 GFEPGAFDG----------LKLNYLRISEAKLTGIPKDLPET---LNELHLDHNKIQ-AI 208

Query: 315 PEHLAVSCVNLEFLALSNNNLK---GHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCS 371
                +    L  L L +N ++       S    L  LR L L+ N L   +P  L    
Sbjct: 209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLS---FLPTLRELHLDNNKLS-RVPAGLPDLK 264

Query: 372 SLEGLYLNNNSLSGKIP-------RWLGNLTGLKHIIMPENHLE-GPIPVG-FCQLYSLQ 422
            L+ +YL+ N+++ K+         +         I +  N +    +    F  +    
Sbjct: 265 LLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323

Query: 423 ILDISDN 429
            +   + 
Sbjct: 324 AIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 45/278 (16%), Positives = 85/278 (30%), Gaps = 56/278 (20%)

Query: 43  ESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRI 102
             +  L+ L +S      N    +   L     L EL I +N +R       + + ++  
Sbjct: 99  SPLRKLQKLYISK-----NHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNC 151

Query: 103 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNHF-QIPISLEPLFNHSRLKIFDAANNEIK 161
           +++  N L  S           +  L +S      IP  L        L      +N+I 
Sbjct: 152 IEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL-----PETLNELHLDHNKI- 205

Query: 162 AEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLL 221
                  ++   +                           L  + L H N      N  L
Sbjct: 206 ------QAIELEDLL---------------------RYSKLYRLGLGH-NQIRMIENGSL 237

Query: 222 ENNTKLRQLYLVNDSLTGPFRLP--IHSHRWLRFLDVSNNNFQGHIP------VEIGDIL 273
                LR+L+L N+ L+   R+P  +   + L+ + +  NN    +       V  G   
Sbjct: 238 SFLPTLRELHLDNNKLS---RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKR 293

Query: 274 PSLISFNISMNALDSSI--PSSFGNMNFLQILDLSNNQ 309
                 ++  N +      P++F  +     +   N +
Sbjct: 294 AYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  117 bits (296), Expect = 3e-29
 Identities = 58/283 (20%), Positives = 98/283 (34%), Gaps = 37/283 (13%)

Query: 252 RFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLT 311
             +  ++      +P     I  S     +  N L S     F  +  L  L LS+N L+
Sbjct: 10  TEIRCNSKGLT-SVP---TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 312 -GEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNF-NLTNLRSLQLEGNHLEGEIPQSL-S 368
                        +L++L LS N +     S NF  L  L  L  + ++L+     S+  
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 369 KCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPEN-HLEGPIPVGFCQLYSLQILDIS 427
              +L  L +++             L+ L+ + M  N   E  +P  F +L +L  LD+S
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 428 DNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWV 487
              +                         QL    F   SSL  L++S+N          
Sbjct: 184 QCQLE------------------------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219

Query: 488 DGLSQLSHLILGHNNLEGEVPVQLCE--LNQLQLLDLSNNNLH 528
             L+ L  L    N++      Q  +   + L  L+L+ N+  
Sbjct: 220 KCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  105 bits (264), Expect = 4e-25
 Identities = 61/311 (19%), Positives = 102/311 (32%), Gaps = 63/311 (20%)

Query: 348 NLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHL 407
           +   ++     L   +P  +   SS   L L +N L          LT L  + +  N L
Sbjct: 8   SGTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 408 E-GPIPVG-FCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHGQLKRGTFF 464
                         SL+ LD+S N +  ++ S F  L  +E +    + L    +   F 
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 465 HCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNN-LEGEVPVQLCELNQLQLLDLS 523
              +L+ LD+S+     +     +GLS L  L +  N+  E  +P    EL  L  LDLS
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 524 NNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAY 583
              L    P  F++ +         SL                                 
Sbjct: 184 QCQLEQLSPTAFNSLS---------SL--------------------------------- 201

Query: 584 IYQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNL-KHI 641
               +VL++      S N     +       L  +Q L+ S N++         +    +
Sbjct: 202 ----QVLNM------SHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 250

Query: 642 ESLDLSYNKLN 652
             L+L+ N   
Sbjct: 251 AFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  100 bits (250), Expect = 4e-23
 Identities = 55/261 (21%), Positives = 93/261 (35%), Gaps = 57/261 (21%)

Query: 420 SLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHGQ-LKRGTFFHCSSLVTLDLSYN 477
           S   L++  N +       F  L  + ++ LS N L  +     + F  +SL  LDLS+N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 478 RLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQL-CELNQLQLLDLSNNNLHGPIPPCFD 536
            +  ++ +   GL QL HL   H+NL+      +   L  L  LD+S+ +        F+
Sbjct: 89  GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147

Query: 537 NTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGL 596
                                                                LS L  L
Sbjct: 148 G----------------------------------------------------LSSLEVL 155

Query: 597 DLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 655
            ++ N    +  P I   L  +  L+LS   L  L P+ F++L  ++ L++S+N      
Sbjct: 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215

Query: 656 PHQLVELKTLAVFSVAYNNLS 676
                 L +L V   + N++ 
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 83.1 bits (206), Expect = 2e-17
 Identities = 58/317 (18%), Positives = 93/317 (29%), Gaps = 91/317 (28%)

Query: 75  HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT-GSISSSPLVHLTSIEELMLSNN 133
               L +++N L+         +T L  L +SSN L+     S      TS++ L LS N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 134 HFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFP 193
                 ++   F                              QL+ L             
Sbjct: 89  GVI---TMSSNFLGLE--------------------------QLEHL------------- 106

Query: 194 KFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRF 253
                  D +   L  ++    F      +   L  L + +                   
Sbjct: 107 -------DFQHSNLKQMSEFSVF-----LSLRNLIYLDISHTHTR--------------- 139

Query: 254 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPS-SFGNMNFLQILDLSNNQLTG 312
               N  F G         L SL    ++ N+   +     F  +  L  LDLS  QL  
Sbjct: 140 -VAFNGIFNG---------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE- 188

Query: 313 EIPEHLAVSCVNLEFLALSNNNLKG---HMFSRNFNLTNLRSLQLEGNHLEGEIPQSL-- 367
           ++      S  +L+ L +S+NN        +     L +L+ L    NH+     +    
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK---CLNSLQVLDYSLNHIM-TSKKQELQ 244

Query: 368 SKCSSLEGLYLNNNSLS 384
              SSL  L L  N  +
Sbjct: 245 HFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 39/211 (18%), Positives = 78/211 (36%), Gaps = 13/211 (6%)

Query: 202 LEDVRLSHVNMD-GEFPNWLLENNTKLRQLYLVNDSLTGPFRLP--IHSHRWLRFLDVSN 258
           L  + LS   +      +      T L+ L L  + +     +         L  LD  +
Sbjct: 54  LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI---TMSSNFLGLEQLEHLDFQH 110

Query: 259 NNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHL 318
           +N +      +   L +LI  +IS      +    F  ++ L++L ++ N         +
Sbjct: 111 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170

Query: 319 AVSCVNLEFLALSNNNLK---GHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEG 375
                NL FL LS   L+      F+   +L++L+ L +  N+            +SL+ 
Sbjct: 171 FTELRNLTFLDLSQCQLEQLSPTAFN---SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227

Query: 376 LYLNNNSLSGKIPRWLGNL-TGLKHIIMPEN 405
           L  + N +     + L +  + L  + + +N
Sbjct: 228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.0 bits (172), Expect = 4e-13
 Identities = 51/292 (17%), Positives = 93/292 (31%), Gaps = 61/292 (20%)

Query: 46  PSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDL--RGSLPWCLANMTSLRIL 103
            S   L +  + L      +       L  L +L + +N L  +G         TSL+ L
Sbjct: 28  SSATRLELESNKL----QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83

Query: 104 DVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAE 163
           D+S N +  ++SS+  + L  +E L   +++ +         +   L   D ++   +  
Sbjct: 84  DLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-- 139

Query: 164 ITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLEN 223
                               +G                LE ++++  +    F   +   
Sbjct: 140 -----------------VAFNG---------IFNGLSSLEVLKMAGNSFQENFLPDIFTE 173

Query: 224 NTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISM 283
              L  L L                        S    +  +     + L SL   N+S 
Sbjct: 174 LRNLTFLDL------------------------SQCQLE-QLSPTAFNSLSSLQVLNMSH 208

Query: 284 NALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNL 335
           N   S     +  +N LQ+LD S N +     + L     +L FL L+ N+ 
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 66.6 bits (163), Expect = 5e-12
 Identities = 39/220 (17%), Positives = 63/220 (28%), Gaps = 60/220 (27%)

Query: 467 SSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLE--GEVPVQLCELNQLQLLDLSN 524
           SS   L+L  N+L        D L+QL+ L L  N L   G           L+ LDLS 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 525 NNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYI 584
           N +   +   F                                                 
Sbjct: 88  NGVIT-MSSNFLG----------------------------------------------- 99

Query: 585 YQGKVLSLLSGLDLSCNKLIGHIPPQ--IGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIE 642
                L  L  LD   +  +  +       +L  +  L++SH +        F+ L  +E
Sbjct: 100 -----LEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153

Query: 643 SLDLSYNKLNGKIPHQ-LVELKTLAVFSVAYNNLSGEIPE 681
            L ++ N            EL+ L    ++   L  ++  
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSP 192

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 39/224 (17%), Positives = 80/224 (35%), Gaps = 28/224 (12%)

Query: 15  FPHFKSLDHLDMVFAR-TALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGL-CS 72
                SL +LD+ F     ++++F       +  L++L    S L     ++ +  +  S
Sbjct: 74  DFGTTSLKYLDLSFNGVITMSSNF-----LGLEQLEHLDFQHSNL----KQMSEFSVFLS 124

Query: 73  LMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 132
           L +L  L I +   R +       ++SL +L ++ N    +        L ++  L LS 
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 133 NHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNF----QLQALSLSSGYGD 188
              +  +S     + S L++ + ++N          SL    +     LQ L  S  +  
Sbjct: 185 CQLEQ-LSPTAFNSLSSLQVLNMSHNNFF-------SLDTFPYKCLNSLQVLDYSLNHIM 236

Query: 189 GVTFPKFLYHQHDLEDVRLSHVNMD-----GEFPNWLLENNTKL 227
                +  +    L  + L+  +         F  W+ +    L
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLL 280

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 5/86 (5%)

Query: 594 SGLDLSCNKL-IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 652
           SG ++ CN   +  +P  I   +    L L  N L  L    F  L  +  L LS N L+
Sbjct: 8   SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 653 GK--IPHQLVELKTLAVFSVAYNNLS 676
            K           +L    +++N + 
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVI 91

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  117 bits (295), Expect = 4e-28
 Identities = 57/258 (22%), Positives = 104/258 (40%), Gaps = 16/258 (6%)

Query: 251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQL 310
              +  +       +P     I  +    N+  N +      +F +++ L++L L  N +
Sbjct: 56  FSKVVCTRRGLS-EVP---QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 311 TGEIPEHLAVSCVNLEFLALSNNNLKG---HMFSRNFNLTNLRSLQLEGNHLEGEIPQSL 367
             +I         +L  L L +N L       F     L+ LR L L  N +E     + 
Sbjct: 112 R-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFE---YLSKLRELWLRNNPIESIPSYAF 167

Query: 368 SKCSSLEGLYL-NNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDI 426
           ++  SL  L L     L          L  LK++ +   +++  +P     L  L+ L++
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LTPLVGLEELEM 225

Query: 427 SDNNISGSLPSCFHPL-SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPN 485
           S N+     P  FH L S++++ +  + +   ++R  F   +SLV L+L++N L+    +
Sbjct: 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHD 284

Query: 486 WVDGLSQLSHLILGHNNL 503
               L  L  L L HN  
Sbjct: 285 LFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  108 bits (272), Expect = 4e-25
 Identities = 62/311 (19%), Positives = 99/311 (31%), Gaps = 74/311 (23%)

Query: 348 NLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHL 407
               +      L  E+PQ +   S+   L L  N++         +L  L+ + +  N +
Sbjct: 55  QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 408 EGPIPVG-FCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHC 466
              I VG F  L SL  L++ DN ++                         +  G F + 
Sbjct: 112 RQ-IEVGAFNGLASLNTLELFDNWLT------------------------VIPSGAFEYL 146

Query: 467 SSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQ-LCELNQLQLLDLSNN 525
           S L  L L  N +        + +  L  L LG       +       L  L+ L+L   
Sbjct: 147 SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206

Query: 526 NLHGPIPPCFDN----TTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNI 581
           N+     P          L  S N                                  + 
Sbjct: 207 NIKD--MPNLTPLVGLEELEMSGN----------------------------------HF 230

Query: 582 AYIYQG--KVLSLLSGLDLSCNKLIGHIPPQ-IGNLTRIQTLNLSHNNLTGLIPSTFSNL 638
             I  G    LS L  L +  ++ +  I       L  +  LNL+HNNL+ L    F+ L
Sbjct: 231 PEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289

Query: 639 KHIESLDLSYN 649
           +++  L L +N
Sbjct: 290 RYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 87.5 bits (217), Expect = 2e-18
 Identities = 53/265 (20%), Positives = 97/265 (36%), Gaps = 48/265 (18%)

Query: 420 SLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRL 479
               +  +   +S  +P    P +   ++L +N +   ++  TF H   L  L L  N +
Sbjct: 55  QFSKVVCTRRGLS-EVPQGI-PSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSI 111

Query: 480 NGSIPNWV-DGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPP-CFDN 537
              I     +GL+ L+ L L  N L          L++L+ L L NN +   IP   F+ 
Sbjct: 112 R-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNR 169

Query: 538 ----TTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQG--KVLS 591
                 L                                        + YI +G  + L 
Sbjct: 170 VPSLMRLDLGELK---------------------------------KLEYISEGAFEGLF 196

Query: 592 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL 651
            L  L+L    +     P +  L  ++ L +S N+   + P +F  L  ++ L +  +++
Sbjct: 197 NLKYLNLGMCNI--KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254

Query: 652 NGKIPHQLVELKTLAVFSVAYNNLS 676
           +    +    L +L   ++A+NNLS
Sbjct: 255 SLIERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 86.0 bits (213), Expect = 9e-18
 Identities = 58/243 (23%), Positives = 90/243 (37%), Gaps = 42/243 (17%)

Query: 221 LENNTKLRQLYLVNDSLT----GPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSL 276
             +   L  L L  +S+     G F         L  L++ +N     IP    + L  L
Sbjct: 95  FRHLHHLEVLQLGRNSIRQIEVGAFN----GLASLNTLELFDNWLT-VIPSGAFEYLSKL 149

Query: 277 ISFNISMNALDSSIPSSFGNMNFLQILDLSN-NQLTGEIPEHLAVSCVNLEFLALSNNNL 335
               +  N ++S    +F  +  L  LDL    +L   I E       NL++L L   N+
Sbjct: 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNI 208

Query: 336 KG-HMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNL 394
           K     +    L  L  L++ GNH     P S    SSL+ L++ N+ +S          
Sbjct: 209 KDMPNLT---PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL--------- 256

Query: 395 TGLKHIIMPENHLEGPIPVG-FCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKN 452
                           I    F  L SL  L+++ NN+S      F PL  + ++HL  N
Sbjct: 257 ----------------IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

Query: 453 MLH 455
             +
Sbjct: 301 PWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.8 bits (210), Expect = 2e-17
 Identities = 48/262 (18%), Positives = 89/262 (33%), Gaps = 36/262 (13%)

Query: 75  HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH 134
           + + L +  N+++        ++  L +L +  N +   I       L S+  L L +N 
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNW 134

Query: 135 FQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPK 194
             + I        S+L+     NN I        S+ +  F      + S          
Sbjct: 135 LTV-IPSGAFEYLSKLRELWLRNNPI-------ESIPSYAFN----RVPS---------- 172

Query: 195 FLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSH-RWLRF 253
                  L  + L  +           E    L+ L L   ++     +P  +    L  
Sbjct: 173 -------LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEE 222

Query: 254 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGE 313
           L++S N+F   I       L SL    +  + +     ++F  +  L  L+L++N L+  
Sbjct: 223 LEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-S 280

Query: 314 IPEHLAVSCVNLEFLALSNNNL 335
           +P  L      L  L L +N  
Sbjct: 281 LPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.5 bits (165), Expect = 7e-12
 Identities = 44/227 (19%), Positives = 75/227 (33%), Gaps = 52/227 (22%)

Query: 465 HCSS-LVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLS 523
            CS+    +  +   L+  +P  +   S   +L L  NN++         L+ L++L L 
Sbjct: 51  SCSNQFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLG 107

Query: 524 NNNLHGPIPP-CFDN----TTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTT 578
            N++   I    F+      TL    N                                 
Sbjct: 108 RNSIRQ-IEVGAFNGLASLNTLELFDNW-------------------------------- 134

Query: 579 KNIAYIYQG--KVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNN-LTGLIPST 634
             +  I  G  + LS L  L L  N  I  IP      +  +  L+L     L  +    
Sbjct: 135 --LTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191

Query: 635 FSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPE 681
           F  L +++ L+L    +   +P+ L  L  L    ++ N+   EI  
Sbjct: 192 FEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFP-EIRP 235

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.9 bits (135), Expect = 3e-08
 Identities = 47/263 (17%), Positives = 89/263 (33%), Gaps = 59/263 (22%)

Query: 10  VRGQGFPHFKSLDHLDMVFARTALNTSFLQIIRE----SMPSLKYLSMSDSTLGTNSSRI 65
           ++   F H   L+ L        L  + ++ I       + SL  L + D+ L    + I
Sbjct: 90  IQADTFRHLHHLEVLQ-------LGRNSIRQIEVGAFNGLASLNTLELFDNWL----TVI 138

Query: 66  LDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS-NQLTGSISSSPLVHLTS 124
                  L  L+EL++ NN +     +    + SL  LD+    +L   IS      L +
Sbjct: 139 PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFN 197

Query: 125 IEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITES--HSLTAPNFQLQALSL 182
           ++ L L   + +    +  L     L+  + + N    EI     H L+     L+ L +
Sbjct: 198 LKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLS----SLKKLWV 249

Query: 183 SSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFR 242
            +                          +          +    L +L L +++L+    
Sbjct: 250 MN--------------------------SQVSLIERNAFDGLASLVELNLAHNNLS---S 280

Query: 243 LP---IHSHRWLRFLDVSNNNFQ 262
           LP       R+L  L + +N + 
Sbjct: 281 LPHDLFTPLRYLVELHLHHNPWN 303

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  116 bits (291), Expect = 1e-27
 Identities = 71/305 (23%), Positives = 111/305 (36%), Gaps = 62/305 (20%)

Query: 348 NLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHL 407
               +     +L  E+P  +S  ++   L L+ N +         +L  L+ + +  NH+
Sbjct: 44  QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 408 EGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHGQLKRGTFFHC 466
                  F  L +L  L++ DN ++      F  L  ++++ L  N +   +    F   
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRI 159

Query: 467 SSLVTLDLS-YNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNN 525
            SL  LDL    RL+       +GLS L +L L   NL  E+P  L  L +L  LDLS N
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGN 217

Query: 526 NLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIY 585
           +L    P  F                                                  
Sbjct: 218 HLSAIRPGSFQG------------------------------------------------ 229

Query: 586 QGKVLSLLSGLDLSCNKLIGHIPPQ-IGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESL 644
               L  L  L +  ++ I  I      NL  +  +NL+HNNLT L    F+ L H+E +
Sbjct: 230 ----LMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284

Query: 645 DLSYN 649
            L +N
Sbjct: 285 HLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  112 bits (283), Expect = 1e-26
 Identities = 57/244 (23%), Positives = 99/244 (40%), Gaps = 17/244 (6%)

Query: 291 PSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLK---GHMFSRNFNLT 347
           PS     N    +      L  E+P+ ++    N   L L  N ++    + F    +L 
Sbjct: 36  PSVCSCSNQFSKVICVRKNLR-EVPDGIST---NTRLLNLHENQIQIIKVNSFK---HLR 88

Query: 348 NLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHL 407
           +L  LQL  NH+      + +  ++L  L L +N L+         L+ LK + +  N +
Sbjct: 89  HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148

Query: 408 EGPIPVG-FCQLYSLQILDISDNNISGSLPS-CFHPL-SIEQVHLSKNMLHGQLKRGTFF 464
           E  IP   F ++ SL+ LD+ +      +    F  L ++  ++L+   L    +     
Sbjct: 149 ES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---EIPNLT 204

Query: 465 HCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSN 524
               L  LDLS N L+   P    GL  L  L +  + ++         L  L  ++L++
Sbjct: 205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264

Query: 525 NNLH 528
           NNL 
Sbjct: 265 NNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  106 bits (266), Expect = 2e-24
 Identities = 64/322 (19%), Positives = 111/322 (34%), Gaps = 61/322 (18%)

Query: 420 SLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNR 478
           + ++L++ +N I     + F  L  +E + LS+N +   ++ G F   ++L TL+L  NR
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNR 123

Query: 479 LNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPP-CFDN 537
           L          LS+L  L L +N +E         +  L+ LDL        I    F+ 
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 538 ----TTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLL 593
                 L+ +  N   +                                       L  L
Sbjct: 184 LSNLRYLNLAMCNLREIPNLTP----------------------------------LIKL 209

Query: 594 SGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 652
             LDLS N  +  I P     L  +Q L +  + +  +  + F NL+ +  ++L++N L 
Sbjct: 210 DELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268

Query: 653 GKIPHQLVE-LKTLAVFSVAYNNLS-----GEIPEWTAQFATFNESSYEGNTFLCGLPLP 706
             +PH L   L  L    + +N  +       +  W    A  N +              
Sbjct: 269 -LLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTAC-----------CA 316

Query: 707 ICRSPATMSEASIGNERDDNLI 728
            C +P  +    IG    +   
Sbjct: 317 RCNTPPNLKGRYIGELDQNYFT 338

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  104 bits (261), Expect = 7e-24
 Identities = 65/283 (22%), Positives = 111/283 (39%), Gaps = 40/283 (14%)

Query: 226 KLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNA 285
           +  ++  V  +L     +P       R L++  N  Q  I V     L  L    +S N 
Sbjct: 44  QFSKVICVRKNLR---EVPDGISTNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNH 99

Query: 286 LDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLK---GHMFSR 342
           + +    +F  +  L  L+L +N+LT  IP    V    L+ L L NN ++    + F+ 
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFN- 157

Query: 343 NFNLTNLRSLQL-EGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHII 401
              + +LR L L E   L      +    S+L  L L   +L  +IP             
Sbjct: 158 --RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP------------- 201

Query: 402 MPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHGQLKR 460
                           L  L  LD+S N++S   P  F  L  ++++ + ++ +   ++R
Sbjct: 202 ------------NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIER 248

Query: 461 GTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNL 503
             F +  SLV ++L++N L     +    L  L  + L HN  
Sbjct: 249 NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 86.0 bits (213), Expect = 7e-18
 Identities = 54/243 (22%), Positives = 88/243 (36%), Gaps = 42/243 (17%)

Query: 221 LENNTKLRQLYLVNDSLT----GPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSL 276
            ++   L  L L  + +     G F         L  L++ +N     IP      L  L
Sbjct: 84  FKHLRHLEILQLSRNHIRTIEIGAFN----GLANLNTLELFDNRLT-TIPNGAFVYLSKL 138

Query: 277 ISFNISMNALDSSIPSSFGNMNFLQILDLS-NNQLTGEIPEHLAVSCVNLEFLALSNNNL 335
               +  N ++S    +F  +  L+ LDL    +L+  I E       NL +L L+  NL
Sbjct: 139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNL 197

Query: 336 KG-HMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNL 394
           +     +    L  L  L L GNHL    P S      L+ L++  + +           
Sbjct: 198 REIPNLT---PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV--------- 245

Query: 395 TGLKHIIMPENHLEGPIPVG-FCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKN 452
                           I    F  L SL  ++++ NN++      F PL  +E++HL  N
Sbjct: 246 ----------------IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

Query: 453 MLH 455
             +
Sbjct: 290 PWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 86.0 bits (213), Expect = 8e-18
 Identities = 52/262 (19%), Positives = 91/262 (34%), Gaps = 36/262 (13%)

Query: 75  HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH 134
           + + L +  N ++        ++  L IL +S N +  +I       L ++  L L +N 
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNR 123

Query: 135 FQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPK 194
               I        S+LK     NN I        S+ +  F      + S          
Sbjct: 124 LTT-IPNGAFVYLSKLKELWLRNNPI-------ESIPSYAFN----RIPS---------- 161

Query: 195 FLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSH-RWLRF 253
                  L  + L  +           E  + LR L L   +L     +P  +    L  
Sbjct: 162 -------LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDE 211

Query: 254 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGE 313
           LD+S N+    I       L  L    +  + +     ++F N+  L  ++L++N LT  
Sbjct: 212 LDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-L 269

Query: 314 IPEHLAVSCVNLEFLALSNNNL 335
           +P  L     +LE + L +N  
Sbjct: 270 LPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 67.5 bits (165), Expect = 7e-12
 Identities = 44/222 (19%), Positives = 73/222 (32%), Gaps = 49/222 (22%)

Query: 464 FHCSS-LVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDL 522
             CS+    +      L   +P+ +   +    L L  N ++         L  L++L L
Sbjct: 39  CSCSNQFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQL 95

Query: 523 SNNNLHGPIPPCFDN----TTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTT 578
           S N++       F+      TL    N                                 
Sbjct: 96  SRNHIRTIEIGAFNGLANLNTLELFDNR-------------------------------- 123

Query: 579 KNIAYIYQG--KVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNN-LTGLIPST 634
             +  I  G    LS L  L L  N  I  IP      +  ++ L+L     L+ +    
Sbjct: 124 --LTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180

Query: 635 FSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLS 676
           F  L ++  L+L+   L  +IP+ L  L  L    ++ N+LS
Sbjct: 181 FEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLS 220

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 44/232 (18%), Positives = 90/232 (38%), Gaps = 33/232 (14%)

Query: 15  FPHFKSLDHLDMVFARTALNTSFLQIIRE----SMPSLKYLSMSDSTLGTNSSRILDQGL 70
           F H + L+ L        L+ + ++ I       + +L  L + D+ L    + I +   
Sbjct: 84  FKHLRHLEILQ-------LSRNHIRTIEIGAFNGLANLNTLELFDNRL----TTIPNGAF 132

Query: 71  CSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS-NQLTGSISSSPLVHLTSIEELM 129
             L  L+EL++ NN +     +    + SLR LD+    +L+  IS      L+++  L 
Sbjct: 133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLN 191

Query: 130 LSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNF----QLQALSLSSG 185
           L+  + +    +  L    +L   D + N +        ++   +F     LQ L +   
Sbjct: 192 LAMCNLR---EIPNLTPLIKLDELDLSGNHL-------SAIRPGSFQGLMHLQKLWMIQS 241

Query: 186 YGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSL 237
               +       +   L ++ L+H N     P+ L      L +++L ++  
Sbjct: 242 QIQVIE-RNAFDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 594 SGLDLSCNKL-IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 652
               + C +  +  +P  I   T  + LNL  N +  +  ++F +L+H+E L LS N + 
Sbjct: 44  QFSKVICVRKNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR 101

Query: 653 GKIPHQLVELKTLAVFSVAYNNLSGEIPE 681
                    L  L    +  N L+  IP 
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLT-TIPN 129

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  112 bits (283), Expect = 3e-27
 Identities = 51/310 (16%), Positives = 110/310 (35%), Gaps = 51/310 (16%)

Query: 347 TNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENH 406
             ++SL L  N +       L +C +L+ L L +N ++        +L  L+H+ +  N+
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 407 LEGPIPVG-FCQLYSLQILDISDNNISGSLP--SCFHPL-SIEQVHLSKNMLHGQLKRGT 462
           L   +    F  L SL  L++  N    +L   S F  L  ++ + +       +++R  
Sbjct: 112 LSN-LSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 463 FFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDL 522
           F   + L  L++  + L    P  +  +  +SHLIL        + + +   + ++ L+L
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 229

Query: 523 SNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIA 582
            + +L                + +   L   ET+ ++                       
Sbjct: 230 RDTDL---------------DTFHFSELSTGETNSLIK---------------------- 252

Query: 583 YIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIE 642
                        + ++   L   +   +  ++ +  L  S N L  +    F  L  ++
Sbjct: 253 -------KFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQ 304

Query: 643 SLDLSYNKLN 652
            + L  N  +
Sbjct: 305 KIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 89.4 bits (222), Expect = 3e-19
 Identities = 56/337 (16%), Positives = 106/337 (31%), Gaps = 70/337 (20%)

Query: 351 SLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGP 410
             +     L   IP  L+   +++ L L+NN ++      L     L+ +++  N +   
Sbjct: 35  ICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT- 90

Query: 411 IPVG-FCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKNMLHGQLKRGTFFHCSS 468
           I    F  L SL+ LD+S N +S    S F PL S+  ++L  N      +   F H + 
Sbjct: 91  IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK 150

Query: 469 LVTLDLSYNRLNGSIP-NWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNL 527
           L  L +        I      GL+ L  L +  ++L+   P  L  +  +  L L     
Sbjct: 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210

Query: 528 HGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQG 587
              +    D                                                   
Sbjct: 211 ILLLEIFVDV-------------------------------------------------- 220

Query: 588 KVLSLLSGLDLSCNKLIGHIPPQI--------GNLTRIQTLNLSHNNLTGLIPSTFSNLK 639
              S +  L+L    L      ++              + + ++  +L   +    + + 
Sbjct: 221 --TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ-VMKLLNQIS 277

Query: 640 HIESLDLSYNKLNGKIPHQLVE-LKTLAVFSVAYNNL 675
            +  L+ S N+L   +P  + + L +L    +  N  
Sbjct: 278 GLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 84.0 bits (208), Expect = 1e-17
 Identities = 65/337 (19%), Positives = 122/337 (36%), Gaps = 80/337 (23%)

Query: 98  TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEP-LFNH-SRLKIFDA 155
            +++ LD+S+N++T  IS+S L    +++ L+L++N      ++E   F+    L+  D 
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN---TIEEDSFSSLGSLEHLDL 107

Query: 156 ANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGE 215
           + N +                    +LSS                               
Sbjct: 108 SYNYLS-------------------NLSSS------------------------------ 118

Query: 216 FPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSH-RWLRFLDVSNNNFQGHIPVEIGDILP 274
                 +  + L  L L+ +         + SH   L+ L V N +    I  +    L 
Sbjct: 119 ----WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT 174

Query: 275 SLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNN 334
            L    I  + L S  P S  ++  +  L L   Q    + E       ++E L L + +
Sbjct: 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTD 233

Query: 335 LKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNL 394
           L        F+ + L + +            SL K  +   + + + SL  ++ + L  +
Sbjct: 234 L------DTFHFSELSTGE----------TNSLIKKFTFRNVKITDESLF-QVMKLLNQI 276

Query: 395 TGLKHIIMPENHLEGPIPVG-FCQLYSLQILDISDNN 430
           +GL  +    N L+  +P G F +L SLQ + +  N 
Sbjct: 277 SGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNP 312

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.4 bits (196), Expect = 5e-16
 Identities = 53/297 (17%), Positives = 90/297 (30%), Gaps = 50/297 (16%)

Query: 76  LQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHF 135
           ++ L + NN +       L    +L+ L ++SN +  +I       L S+E L LS N+ 
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL 112

Query: 136 QIPISLEP-LFNH-SRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFP 193
               +L    F   S L   +   N  K               L   SL S         
Sbjct: 113 S---NLSSSWFKPLSSLTFLNLLGNPYKT--------------LGETSLFSHLTK----- 150

Query: 194 KFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRF 253
             L           + +              T L +L +    L       + S + +  
Sbjct: 151 --LQILRVGNMDTFTKI------QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202

Query: 254 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALD----SSIPS----SFGNMNFLQILDL 305
           L +        +     D+  S+    +    LD    S + +    S       + + +
Sbjct: 203 LILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261

Query: 306 SNNQLTGEIPEHLAVSCVNLEFLALSNNNLKG---HMFSRNFNLTNLRSLQLEGNHL 359
           ++  L       L      L  L  S N LK     +F     LT+L+ + L  N  
Sbjct: 262 TDESLFQ--VMKLLNQISGLLELEFSRNQLKSVPDGIFD---RLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.0 bits (130), Expect = 8e-08
 Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 13/128 (10%)

Query: 15  FPHFKSLDHLDMVFARTALN--TSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQG--- 69
               +++ HL +      +      L+I  +   S++ L + D+ L T     L  G   
Sbjct: 194 LKSIQNVSHLIL-----HMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN 248

Query: 70  -LCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 128
            L      + + I +  L   +   L  ++ L  L+ S NQL  S+       LTS++++
Sbjct: 249 SLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKI 306

Query: 129 MLSNNHFQ 136
            L  N + 
Sbjct: 307 WLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 28/179 (15%), Positives = 58/179 (32%), Gaps = 21/179 (11%)

Query: 15  FPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNS--SRILDQGLCS 72
           F    SL  L+       L  +  + + E+        +    +G     ++I  +    
Sbjct: 120 FKPLSSLTFLN-------LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172

Query: 73  LMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 132
           L  L+EL ID +DL+   P  L ++ ++  L +   Q    +    +   +S+E L L +
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRD 231

Query: 133 NHFQI-------PISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSS 184
                             L      +     +  +   +   + ++     L  L  S 
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS----GLLELEFSR 286

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  115 bits (290), Expect = 5e-27
 Identities = 91/475 (19%), Positives = 161/475 (33%), Gaps = 60/475 (12%)

Query: 72  SLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 131
            L  L+ L + +N +R            L  LDVS N+L  +IS  P+  L     L LS
Sbjct: 74  FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCCPMASLR---HLDLS 129

Query: 132 NNHFQ-IPISLEPLFNH-SRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDG 189
            N F  +P+     F + ++L     +                   + + L L       
Sbjct: 130 FNDFDVLPVC--KEFGNLTKLTFLGLSAA-----------------KFRQLDL-----LP 165

Query: 190 VTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHR 249
           V          DL    +      GE  +  + N T L  ++  N   +    + +++  
Sbjct: 166 VAHLHLSCILLDLVSYHIKG----GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALG 221

Query: 250 WLRFLDVS-NNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQI-----L 303
            L+  ++  N+     +   + ++       N+++  ++++   S     F        L
Sbjct: 222 HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281

Query: 304 DLSNNQLTGEIPEHLAVSC----VNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHL 359
           ++ N  +T  I             +L    + N        +       +    L  +  
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341

Query: 360 EGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLY 419
                      SS   L    N  +  + +    L  L+ +I+  N L+           
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN-FFKVALMTK 400

Query: 420 SLQILDISDNNISGSLPS------CFHPLSIEQVHLSKNMLHGQLKRGTFFHC--SSLVT 471
           ++  L+  D +++ SL S      C    SI  ++LS NML      G+ F C    +  
Sbjct: 401 NMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLT-----GSVFRCLPPKVKV 454

Query: 472 LDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNN 526
           LDL  NR+  SIP  V  L  L  L +  N L+         L  LQ + L +N 
Sbjct: 455 LDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  104 bits (260), Expect = 2e-23
 Identities = 71/421 (16%), Positives = 150/421 (35%), Gaps = 33/421 (7%)

Query: 251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQL 310
           LR L +S+N  +  +   +      L   ++S N L  +I      M  L+ LDLS N  
Sbjct: 78  LRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL-QNIS--CCPMASLRHLDLSFNDF 133

Query: 311 TGEIPEHLAVSC-VNLEFLALSNNNLKGHMFSRNFNL-TNLRSLQLEGNHLEGEIPQSLS 368
              +P          L FL LS    +        +L  +   L L   H++G   +SL 
Sbjct: 134 D-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQ 192

Query: 369 --KCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGP----IPVGFCQLYSLQ 422
               + L  ++  N+  S ++   +  L  L+   +  N               +  +L 
Sbjct: 193 IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252

Query: 423 ILDISDNNISG----SLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCS----SLVTLDL 474
            + +     +      L   F P  +E +++    +  ++ R  F +      SL+   +
Sbjct: 253 NVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV 312

Query: 475 SYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPC 534
                  S        ++++  +L  ++      V     +    L+ + N     +   
Sbjct: 313 KNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQG 372

Query: 535 FDN----TTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVL 590
                   TL    N   +      +L+  +M      +  +    +  + AY       
Sbjct: 373 CSTLKRLQTLILQRNGLKNFFK--VALMTKNMSSL---ETLDVSLNSLNSHAYDRTCAWA 427

Query: 591 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNK 650
             +  L+LS N L G +   +    +++ L+L +N +  + P   ++L+ ++ L+++ N+
Sbjct: 428 ESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIMSI-PKDVTHLQALQELNVASNQ 484

Query: 651 L 651
           L
Sbjct: 485 L 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 98.8 bits (246), Expect = 1e-21
 Identities = 68/395 (17%), Positives = 131/395 (33%), Gaps = 33/395 (8%)

Query: 302 ILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNN---LKGHMFSRNFNLTNLRSLQLEGNH 358
           ++D SN  LT  +P+ L       + L+LS N+   L+    S    L+ LR L+L  N 
Sbjct: 35  MVDYSNRNLT-HVPKDL---PPRTKALSLSQNSISELRMPDISF---LSELRVLRLSHNR 87

Query: 359 LEGEIPQSL-SKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEG-PIPVGFC 416
           +   +   +      LE L +++N L   I      +  L+H+ +  N  +  P+   F 
Sbjct: 88  IR-SLDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRHLDLSFNDFDVLPVCKEFG 143

Query: 417 QLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSY 476
            L  L  L +S              L +  + L     H +          +   L L +
Sbjct: 144 NLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203

Query: 477 NRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFD 536
           +  +         ++ L HL L +  L  E   +L           +  N+         
Sbjct: 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263

Query: 537 NTTLH-------------ESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAY 583
             ++                 N + + +            + +    H   +    +   
Sbjct: 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEA 323

Query: 584 IYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIES 643
           +Y     + ++   LS +           + +    LN + N  T  +    S LK +++
Sbjct: 324 LYSV--FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQT 381

Query: 644 LDLSYNKLN--GKIPHQLVELKTLAVFSVAYNNLS 676
           L L  N L    K+      + +L    V+ N+L+
Sbjct: 382 LILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 54.9 bits (132), Expect = 7e-08
 Identities = 40/278 (14%), Positives = 81/278 (29%), Gaps = 64/278 (23%)

Query: 33  LNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPW 92
           ++         ++ SL    + +     +   +          +    +  +D       
Sbjct: 292 IDREEFTYSETALKSLMIEHVKNQVFLFSKEALYS----VFAEMNIKMLSISDTPFIHMV 347

Query: 93  CLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKI 152
           C  + +S   L+ + N  T          L  ++ L+L  N  +   +   +   ++   
Sbjct: 348 CPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLK---NFFKVALMTK--- 400

Query: 153 FDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNM 212
                                   + +L                    D+    L+    
Sbjct: 401 -----------------------NMSSLET-----------------LDVSLNSLNSHAY 420

Query: 213 DGEFPNWLLENNTKLRQLYLVNDSLT-GPF-RLPIHSHRWLRFLDVSNNNFQGHIPVEIG 270
           D             +  L L ++ LT   F  LP      ++ LD+ NN     IP ++ 
Sbjct: 421 DR-----TCAWAESILVLNLSSNMLTGSVFRCLPPK----VKVLDLHNNRIM-SIPKDV- 469

Query: 271 DILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNN 308
             L +L   N++ N L S     F  +  LQ + L +N
Sbjct: 470 THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  109 bits (274), Expect = 2e-25
 Identities = 70/424 (16%), Positives = 127/424 (29%), Gaps = 78/424 (18%)

Query: 259 NNFQGHIPVEIGDILP-----SLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGE 313
           N  +        D  P     S ++    M A D+    S   +  L  LD  N+ +T +
Sbjct: 1   NTLKAGQTQSFNDWFPDDNFASEVAAAFEMQATDTI---SEEQLATLTSLDCHNSSIT-D 56

Query: 314 IPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSL 373
           +          L  L  ++NN+     S     TNL  L  + N L   +   ++  + L
Sbjct: 57  MTG--IEKLTGLTKLICTSNNITTLDLS---QNTNLTYLACDSNKLT-NLD--VTPLTKL 108

Query: 374 EGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISG 433
             L  + N L+ K+   +     L ++    N L     +       L  LD   N    
Sbjct: 109 TYLNCDTNKLT-KLD--VSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKIT 162

Query: 434 SLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQL 493
            L        +  +  S N    ++          L  L+   N +   +   ++   QL
Sbjct: 163 KLDVTPQT-QLTTLDCSFN----KITELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQL 214

Query: 494 SHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDN-TTLHESSNNSYSLKP 552
           + L    N L     + +  L QL   D S N L           TTLH    +      
Sbjct: 215 TFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTD------ 265

Query: 553 FETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIG 612
                                      ++ +       + L        + I  +   + 
Sbjct: 266 -----------------------LLEIDLTH------NTQLIYFQAEGCRKIKELD--VT 294

Query: 613 NLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAY 672
           + T++  L+     +T L     S    +  L L+  +L  ++   +     L   S   
Sbjct: 295 HNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVN 348

Query: 673 NNLS 676
            ++ 
Sbjct: 349 AHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  106 bits (266), Expect = 2e-24
 Identities = 82/387 (21%), Positives = 144/387 (37%), Gaps = 51/387 (13%)

Query: 69  GLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 128
           G+  L  L +L   +N++  +L   L+  T+L  L   SN+LT    +  +  LT +  L
Sbjct: 59  GIEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDSNKLT----NLDVTPLTKLTYL 111

Query: 129 MLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGD 188
               N     ++   +  +  L   + A N +  EI  SH     N QL  L       +
Sbjct: 112 NCDTNK----LTKLDVSQNPLLTYLNCARNTLT-EIDVSH-----NTQLTELDCH---LN 158

Query: 189 GVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSH 248
                  +  Q  L  +  S  N   E     +  N  L +L    +++T   +L ++ +
Sbjct: 159 KKITKLDVTPQTQLTTLDCSF-NKITELD---VSQNKLLNRLNCDTNNIT---KLDLNQN 211

Query: 249 RWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNN 308
             L FLD S+N     I V     L  L  F+ S+N L     S+      L  L     
Sbjct: 212 IQLTFLDCSSNKLT-EIDVT---PLTQLTYFDCSVNPLTELDVSTLSK---LTTLHCIQT 264

Query: 309 QLTGEIPEHLAVSCVNLEFLALSNNN-LKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSL 367
            L  EI          L +        +K    +   + T L  L  +   +  E+   L
Sbjct: 265 DLL-EID---LTHNTQLIYFQAEGCRKIKELDVT---HNTQLYLLDCQAAGIT-ELD--L 314

Query: 368 SKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDIS 427
           S+   L  LYLNN  L+ ++   + + T LK +     H++        ++ +L     +
Sbjct: 315 SQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQD-FSS-VGKIPALNNNFEA 369

Query: 428 DNNISGSLPSCFHPLSIEQVHLSKNML 454
           +     ++P      +   + +S ++L
Sbjct: 370 EGQTI-TMPKETLTNNSLTIAVSPDLL 395

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  106 bits (266), Expect = 2e-24
 Identities = 79/472 (16%), Positives = 144/472 (30%), Gaps = 50/472 (10%)

Query: 251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQL 310
                 +    Q    +     L +L S +   +++ + +      +  L  L  ++N +
Sbjct: 20  FASEVAAAFEMQATDTISEEQ-LATLTSLDCHNSSI-TDMTG-IEKLTGLTKLICTSNNI 76

Query: 311 TGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKC 370
           T  +         NL +LA  +N L     +    LT L  L  + N L       +S+ 
Sbjct: 77  T-TLD---LSQNTNLTYLACDSNKLTNLDVT---PLTKLTYLNCDTNKLT---KLDVSQN 126

Query: 371 SSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNN 430
             L  L    N+L+ +I   + + T L  +    N     +         L  LD S N 
Sbjct: 127 PLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK 181

Query: 431 ISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGL 490
           I+  L    +   + +++   N     + +        L  LD S N+L   I   V  L
Sbjct: 182 IT-ELDVSQNK-LLNRLNCDTN----NITKLDLNQNIQLTFLDCSSNKLT-EID--VTPL 232

Query: 491 SQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHG-PIPPCFDNTTLHESSNNSYS 549
           +QL++     N L     + +  L++L  L     +L    +                  
Sbjct: 233 TQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIK 289

Query: 550 LKPFE--TSLVMDSMMIPAEKQIHENFEFTTKNIAYIY---------QGKVLSLLSGLDL 598
                  T L +          I E        + Y+Y              + L  L  
Sbjct: 290 ELDVTHNTQLYLLDC---QAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSC 346

Query: 599 SCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG---KI 655
               +       +G +  +     +      +   T +N     ++        G    I
Sbjct: 347 VNAHIQD-FSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNI 404

Query: 656 PHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPI 707
                 +   A  ++ + NLS + P  T  F + N +     T     P PI
Sbjct: 405 EPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTVTTPFEAPQPI 456

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  105 bits (264), Expect = 4e-24
 Identities = 65/437 (14%), Positives = 123/437 (28%), Gaps = 75/437 (17%)

Query: 113 SISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTA 172
           +  +     L ++  L   N+       +  +   + L      +N I   +  S     
Sbjct: 32  ATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSNNIT-TLDLSQ---- 83

Query: 173 PNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYL 232
            N  L  L+  S                          N         +   TKL  L  
Sbjct: 84  -NTNLTYLACDS--------------------------NKLTNLD---VTPLTKLTYLNC 113

Query: 233 VNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPS 292
             + LT    L +  +  L +L+ + N     I V        L   +  +N   + +  
Sbjct: 114 DTNKLTK---LDVSQNPLLTYLNCARNTLT-EIDVSH---NTQLTELDCHLNKKITKLD- 165

Query: 293 SFGNMNFLQILDLSNNQLTGEIPEHLAVS-CVNLEFLALSNNNLKGHMFSRNFNLTNLRS 351
                  L  LD S N++T      L VS    L  L    NN+     +       L  
Sbjct: 166 -VTPQTQLTTLDCSFNKIT-----ELDVSQNKLLNRLNCDTNNITKLDLN---QNIQLTF 216

Query: 352 LQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPI 411
           L    N L  EI   ++  + L     + N L+ ++   +  L+ L  +   +  L   I
Sbjct: 217 LDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLLE-I 269

Query: 412 PVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVT 471
            +       L             L    +   +  +          +          LV 
Sbjct: 270 DLTHNT--QLIYFQAEGCRKIKELDVTHNT-QLYLLDCQAA----GITELDLSQNPKLVY 322

Query: 472 LDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPI 531
           L L+   L   +   V   ++L  L   + +++ +    + ++  L     +        
Sbjct: 323 LYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMP 377

Query: 532 PPCFDNTTLHESSNNSY 548
                N +L  + +   
Sbjct: 378 KETLTNNSLTIAVSPDL 394

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 77.8 bits (192), Expect = 3e-15
 Identities = 66/394 (16%), Positives = 117/394 (29%), Gaps = 88/394 (22%)

Query: 44  SMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRIL 103
             P L YL+ +      N+   +D  +     L EL    N     L   +   T L  L
Sbjct: 125 QNPLLTYLNCAR-----NTLTEID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTL 175

Query: 104 DVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAE 163
           D S N++T       +     +  L    N+    I+   L  + +L   D ++N++  E
Sbjct: 176 DCSFNKIT----ELDVSQNKLLNRLNCDTNN----ITKLDLNQNIQLTFLDCSSNKLT-E 226

Query: 164 ITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLEN 223
           I  +        QL     S                           N   E        
Sbjct: 227 IDVTP-----LTQLTYFDCSV--------------------------NPLTELDVS---T 252

Query: 224 NTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISM 283
            +KL  L+ +   L     + +  +  L +           + V        L   +   
Sbjct: 253 LSKLTTLHCIQTDLL---EIDLTHNTQLIYFQAEGCRKIKELDVTH---NTQLYLLDCQA 306

Query: 284 NALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRN 343
             + + +         L  L L+N +LT E+          L+ L+  N +++   FS  
Sbjct: 307 AGI-TELD--LSQNPKLVYLYLNNTELT-ELD---VSHNTKLKSLSCVNAHIQD--FSSV 357

Query: 344 FNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMP 403
             +  L +                    ++    L NNSL+  +   L +  G    I P
Sbjct: 358 GKIPALNNNFEAEGQT-----------ITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEP 406

Query: 404 ENHLEGPIPVGFCQLYSLQILDISDNNISGSLPS 437
            +            +Y      I+  N+S   P+
Sbjct: 407 GD----------GGVYDQATNTITWENLSTDNPA 430

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 41/270 (15%), Positives = 78/270 (28%), Gaps = 59/270 (21%)

Query: 43  ESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRI 102
                L +L  S + L           +  L  L       N L   L   ++ ++ L  
Sbjct: 209 NQNIQLTFLDCSSNKLTEID-------VTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTT 258

Query: 103 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKA 162
           L      L        L H T +             I    + ++++L + D     I  
Sbjct: 259 LHCIQTDLL----EIDLTHNTQLIYFQAEGCRK---IKELDVTHNTQLYLLDCQAAGIT- 310

Query: 163 EITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLE 222
           E+  S      N +L  L L+                    +  L+ ++         + 
Sbjct: 311 ELDLSQ-----NPKLVYLYLN--------------------NTELTELD---------VS 336

Query: 223 NNTKLRQLYLVNDSLTGPFRLP-IHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNI 281
           +NTKL+ L  VN  +        +     L     +       I +    +  + ++  +
Sbjct: 337 HNTKLKSLSCVNAHIQD---FSSVGKIPALNNNFEAEGQT---ITMPKETLTNNSLTIAV 390

Query: 282 SMNALDSSIPSSFGNMNFLQILDLSNNQLT 311
           S + LD              + D + N +T
Sbjct: 391 SPDLLDQFGNPMNIEPGDGGVYDQATNTIT 420

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  104 bits (261), Expect = 8e-25
 Identities = 56/264 (21%), Positives = 89/264 (33%), Gaps = 42/264 (15%)

Query: 247 SHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLS 306
            +             Q  +P     I  +     +  N +     +SF     L IL L 
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVP---VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLH 64

Query: 307 NNQLTGEIPEHLAVSCVNLEFLALSNNN----LKGHMFSRNFNLTNLRSLQLEGNHLEGE 362
           +N L   I          LE L LS+N     +    F     L  L +L L+   L+ E
Sbjct: 65  SNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH---GLGRLHTLHLDRCGLQ-E 119

Query: 363 IPQ-SLSKCSSLEGLYLNNNSLSGKIP-RWLGNLTGLKHIIMPENHLEGPIPVGFCQLYS 420
           +        ++L+ LYL +N+L   +P     +L  L H+ +  N +       F  L+S
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178

Query: 421 LQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLN 480
           L  L +  N ++                         +    F     L+TL L  N L+
Sbjct: 179 LDRLLLHQNRVA------------------------HVHPHAFRDLGRLMTLYLFANNLS 214

Query: 481 GSIPNWV-DGLSQLSHLILGHNNL 503
            ++P      L  L +L L  N  
Sbjct: 215 -ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  102 bits (257), Expect = 2e-24
 Identities = 53/231 (22%), Positives = 84/231 (36%), Gaps = 13/231 (5%)

Query: 303 LDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGE 362
                  L   +P  +       + + L  N +     +      NL  L L  N L   
Sbjct: 16  TSCPQQGLQ-AVPVGIPA---ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 363 IPQSLSKCSSLEGLYLNNNSLSGKIP-RWLGNLTGLKHIIMPENHLEGPIPVG-FCQLYS 420
              + +  + LE L L++N+    +       L  L  + +    L+  +  G F  L +
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAA 130

Query: 421 LQILDISDNNISGSLPS-CFHPL-SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNR 478
           LQ L + DN +  +LP   F  L ++  + L  N +   +    F    SL  L L  NR
Sbjct: 131 LQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNR 188

Query: 479 LNGSIPNWV-DGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLH 528
           +   +       L +L  L L  NNL       L  L  LQ L L++N   
Sbjct: 189 VA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 97.4 bits (243), Expect = 2e-22
 Identities = 45/211 (21%), Positives = 81/211 (38%), Gaps = 12/211 (5%)

Query: 251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQL 310
            + + +  N    H+P        +L    +  N L     ++F  +  L+ LDLS+N  
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 311 TGEIPEHLAVSCVNLEFLALSNNNLK---GHMFSRNFNLTNLRSLQLEGNHLEGEIP-QS 366
              +          L  L L    L+     +F     L  L+ L L+ N L+  +P  +
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR---GLAALQYLYLQDNALQ-ALPDDT 148

Query: 367 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG-FCQLYSLQILD 425
                +L  L+L+ N +S    R    L  L  +++ +N +   +    F  L  L  L 
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLY 207

Query: 426 ISDNNISGSLPSCFHPL-SIEQVHLSKNMLH 455
           +  NN+S        PL +++ + L+ N   
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 91.6 bits (228), Expect = 2e-20
 Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 13/193 (6%)

Query: 362 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSL 421
            +P  +   ++ + ++L+ N +S            L  + +  N L       F  L  L
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 422 QILDISDNNISGSLPS-CFHPL-SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRL 479
           + LD+SDN    S+    FH L  +  +HL +  L  +L  G F   ++L  L L  N L
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL 141

Query: 480 NGSIP-NWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPP-CFDN 537
             ++P +    L  L+HL L  N +          L+ L  L L  N +   + P  F +
Sbjct: 142 Q-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH-VHPHAFRD 199

Query: 538 ----TTLHESSNN 546
                TL+  +NN
Sbjct: 200 LGRLMTLYLFANN 212

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.6 bits (176), Expect = 9e-14
 Identities = 46/218 (21%), Positives = 69/218 (31%), Gaps = 43/218 (19%)

Query: 467 SSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNN 526
           ++   + L  NR++            L+ L L  N L          L  L+ LDLS+N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 527 LHGPIPP-CFDN----TTLHESSNNSYSLKP--FETSLVMDSMMIPAEKQIHENFEFTTK 579
               + P  F       TLH        L P  F                          
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG------------------------ 127

Query: 580 NIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNL 638
                     L+ L  L L  N  +  +P     +L  +  L L  N ++ +    F  L
Sbjct: 128 ----------LAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176

Query: 639 KHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLS 676
             ++ L L  N++    PH   +L  L    +  NNLS
Sbjct: 177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 48/290 (16%), Positives = 83/290 (28%), Gaps = 84/290 (28%)

Query: 46  PSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDV 105
            + + + +     G   S +      +  +L  L++ +N L          +  L  LD+
Sbjct: 32  AASQRIFLH----GNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 106 SSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEIT 165
           S N    S+  +    L  +  L L     Q    L P        +F            
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ---ELGP-------GLFR----------- 126

Query: 166 ESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNT 225
               L      LQ L L                        L  +      P+    +  
Sbjct: 127 ---GLA----ALQYLYLQDN--------------------ALQAL------PDDTFRDLG 153

Query: 226 KLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNA 285
            L  L+L  + ++                 V    F+G         L SL    +  N 
Sbjct: 154 NLTHLFLHGNRIS----------------SVPERAFRG---------LHSLDRLLLHQNR 188

Query: 286 LDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNL 335
           +    P +F ++  L  L L  N L+  +P         L++L L++N  
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 10/97 (10%)

Query: 590 LSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSY 648
           L+LL  LDLS N  +  + P     L R+ TL+L    L  L P  F  L  ++ L L  
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138

Query: 649 NKLNGKIPHQ----LVELKTLAVFSVAYNNLSGEIPE 681
           N L   +P      L  L  L    +  N +S  +PE
Sbjct: 139 NALQ-ALPDDTFRDLGNLTHL---FLHGNRIS-SVPE 170

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 17/93 (18%), Positives = 42/93 (45%), Gaps = 5/93 (5%)

Query: 44  SMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRIL 103
            + +L +L +  + +    S + ++    L  L  L +  N +    P    ++  L  L
Sbjct: 151 DLGNLTHLFLHGNRI----SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 104 DVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQ 136
            + +N L+ ++ +  L  L +++ L L++N + 
Sbjct: 207 YLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  104 bits (261), Expect = 2e-23
 Identities = 59/314 (18%), Positives = 105/314 (33%), Gaps = 51/314 (16%)

Query: 223 NNTKLRQLYLVNDSLTGPFRLPIHSHRW--LRFLDVSNNNFQGHIPVEIGDILPSLISFN 280
           NN  L Q    N              +W        + N     +      ++       
Sbjct: 9   NNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLK---ECLINQFSELQ 65

Query: 281 ISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMF 340
           ++   L SS+P +      + +L+++ N L   +PE  A    +LE+L   +N L     
Sbjct: 66  LNRLNL-SSLPDNLPP--QITVLEITQNALI-SLPELPA----SLEYLDACDNRLS---- 113

Query: 341 SRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHI 400
           +      +L+ L ++ N L   +P+  +    LE +  +NN L+  +P    +L  L   
Sbjct: 114 TLPELPASLKHLDVDNNQLT-MLPELPA---LLEYINADNNQLT-MLPELPTSLEVL--- 165

Query: 401 IMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKR 460
            +  N L   +P       SL+ LD+S N +  SLP+        + H S+         
Sbjct: 166 SVRNNQLTF-LPE---LPESLEALDVSTNLLE-SLPA-----VPVRNHHSE--------- 206

Query: 461 GTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLL 520
                  + +      NR+   IP  +  L     +IL  N L   +   L +       
Sbjct: 207 ------ETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDY 259

Query: 521 DLSNNNLHGPIPPC 534
                         
Sbjct: 260 HGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  102 bits (256), Expect = 6e-23
 Identities = 60/366 (16%), Positives = 104/366 (28%), Gaps = 103/366 (28%)

Query: 296 NMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSN---NNLKGHMFSRNFNLTNLRSL 352
           N NF    +   N ++         +    E  AL     N     +  +   +     L
Sbjct: 8   NNNFSLSQNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLL--KECLINQFSEL 64

Query: 353 QLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIP 412
           QL   +L   +P +L     +  L +  N+L   +P    +L  L      +N L   +P
Sbjct: 65  QLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLPELPASLEYLD---ACDNRLST-LP 116

Query: 413 VGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTL 472
                  SL+ LD+ +N ++  LP                              + L  +
Sbjct: 117 ELPA---SLKHLDVDNNQLT-MLPELP---------------------------ALLEYI 145

Query: 473 DLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIP 532
           +   N+L   +P   +  + L  L + +N L   +P        L+ LD+S N L     
Sbjct: 146 NADNNQLT-MLP---ELPTSLEVLSVRNNQLT-FLPELP---ESLEALDVSTNLL----- 192

Query: 533 PCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSL 592
                 +L      ++  +                                         
Sbjct: 193 -----ESLPAVPVRNHHSE---------------------------------------ET 208

Query: 593 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 652
                   N+ I HIP  I +L    T+ L  N L+  I  + S               +
Sbjct: 209 EIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS 267

Query: 653 GKIPHQ 658
                Q
Sbjct: 268 MSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 87.3 bits (216), Expect = 6e-18
 Identities = 72/448 (16%), Positives = 131/448 (29%), Gaps = 79/448 (17%)

Query: 89  SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHS 148
           S+   + N  SL   +   N ++    +         E+  L   +    +SL      +
Sbjct: 2   SIMLPINNNFSL-SQNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN 59

Query: 149 RLKIFDAANNEIK---AEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDV 205
           +          +      +           Q+  L ++                      
Sbjct: 60  QFSELQLNRLNLSSLPDNLPP---------QITVLEITQ--------------------- 89

Query: 206 RLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHI 265
                N     P         L  L   ++ L+    LP      L+ LDV NN     +
Sbjct: 90  -----NALISLPELP----ASLEYLDACDNRLS---TLPELPAS-LKHLDVDNNQLT-ML 135

Query: 266 PVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNL 325
           P         L   N   N L + +P    +   L++L + NNQLT  +PE       +L
Sbjct: 136 PELPA----LLEYINADNNQL-TMLPELPTS---LEVLSVRNNQLT-FLPELPE----SL 182

Query: 326 EFLALSNNNLKG--HMFSRNFNLTNLR-SLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNS 382
           E L +S N L+    +  RN +        +   N +   IP+++        + L +N 
Sbjct: 183 EALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNP 241

Query: 383 LSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPL 442
           LS +I   L   T       P  +    +  G        + D        +        
Sbjct: 242 LSSRIRESLSQQTAQPDYHGPRIYF--SMSDGQQNTLHRPLADAVTAWFPENKQ------ 293

Query: 443 SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGS---IPNWVDGLSQLSHLILG 499
               V    +    +    TF      ++  +S    +G    +  W++ LS  + L   
Sbjct: 294 --SDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQ 351

Query: 500 HNNLEGEVPVQLCELNQLQLLDLSNNNL 527
              +  +      +   L   +L    L
Sbjct: 352 SFAVAADATESCEDRVALTWNNLRKTLL 379

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 75.0 bits (184), Expect = 4e-14
 Identities = 56/317 (17%), Positives = 95/317 (29%), Gaps = 62/317 (19%)

Query: 71  CSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELML 130
           C +    EL ++  +L  SLP  L     + +L+++ N L  S+   P     S+E L  
Sbjct: 56  CLINQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELP----ASLEYLDA 107

Query: 131 SNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGV 190
            +N      +L  L   + LK  D  NN++         L      L+ ++  +      
Sbjct: 108 CDNRLS---TLPELP--ASLKHLDVDNNQLT-------MLPELPALLEYINADN------ 149

Query: 191 TFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRW 250
                               N     P       T L  L + N+ LT    LP      
Sbjct: 150 --------------------NQLTMLPELP----TSLEVLSVRNNQLTFLPELPES---- 181

Query: 251 LRFLDVSNNNFQGHIPVEIGDI---LPSLISFNISMNALDSSIPSSFGNMNFLQILDLSN 307
           L  LDVS N  +  +P           + I F    N + + IP +  +++    + L +
Sbjct: 182 LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILED 239

Query: 308 NQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSL 367
           N L+                              +N     L                 +
Sbjct: 240 NPLS-SRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVT--AWFPENKQSDV 296

Query: 368 SKCSSLEGLYLNNNSLS 384
           S+         + N+ S
Sbjct: 297 SQIWHAFEHEEHANTFS 313

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 89.6 bits (223), Expect = 6e-20
 Identities = 53/216 (24%), Positives = 98/216 (45%), Gaps = 15/216 (6%)

Query: 271 DILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLAL 330
           ++  S  + ++S N L      SF +   LQ+LDLS  ++   I +    S  +L  L L
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLIL 83

Query: 331 SNNNLK---GHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSL-SGK 386
           + N ++      FS    L++L+ L     +L       +    +L+ L + +N + S K
Sbjct: 84  TGNPIQSLALGAFS---GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 387 IPRWLGNLTGLKHIIMPENHLEGPIPVG-FCQLYSLQI----LDISDNNISGSLPSCFHP 441
           +P +  NLT L+H+ +  N ++  I       L+ + +    LD+S N ++   P  F  
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

Query: 442 LSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYN 477
           + ++++ L  N L   +  G F   +SL  + L  N
Sbjct: 200 IRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 88.1 bits (219), Expect = 2e-19
 Identities = 57/291 (19%), Positives = 88/291 (30%), Gaps = 80/291 (27%)

Query: 362 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG-FCQLYS 420
           +IP +L    S + L L+ N L         +   L+ + +    ++  I  G +  L  
Sbjct: 21  KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSH 77

Query: 421 LQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLN 480
           L  L ++ N I  SL                         G F   SSL  L      L 
Sbjct: 78  LSTLILTGNPIQ-SLAL-----------------------GAFSGLSSLQKLVAVETNLA 113

Query: 481 GSIPNWV-DGLSQLSHLILGHNNL-EGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNT 538
            S+ N+    L  L  L + HN +   ++P     L  L+ LDLS+N +           
Sbjct: 114 -SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 539 TLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDL 598
                                                            ++  L   LDL
Sbjct: 173 H------------------------------------------------QMPLLNLSLDL 184

Query: 599 SCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 649
           S N  +  I P      R++ L L  N L  +    F  L  ++ + L  N
Sbjct: 185 SLNP-MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 86.2 bits (214), Expect = 8e-19
 Identities = 53/270 (19%), Positives = 91/270 (33%), Gaps = 71/270 (26%)

Query: 288 SSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLK---GHMFSRNF 344
            ++P S       + LDLS N L   +  +   S   L+ L LS   ++      +    
Sbjct: 24  DNLPFS------TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ--- 73

Query: 345 NLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPE 404
           +L++L +L L GN ++     + S  SSL+ L     +L+  +                 
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLE---------------- 116

Query: 405 NHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFF 464
                        L +L+ L+++ N I  S                            F 
Sbjct: 117 -------NFPIGHLKTLKELNVAHNLIQ-SFKL----------------------PEYFS 146

Query: 465 HCSSLVTLDLSYNRLNGSIPNWV-DGLSQL----SHLILGHNNLEGEVPVQLCELNQLQL 519
           + ++L  LDLS N++  SI       L Q+      L L  N +   +     +  +L+ 
Sbjct: 147 NLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKE 204

Query: 520 LDLSNNNLHGPIPPCFDN----TTLHESSN 545
           L L  N L       FD       +   +N
Sbjct: 205 LALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 74.2 bits (183), Expect = 1e-14
 Identities = 41/192 (21%), Positives = 71/192 (36%), Gaps = 16/192 (8%)

Query: 223 NNTKLRQLYLVNDSLTGPFRLPI---HSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISF 279
           +  +L+ L L    +     +      S   L  L ++ N  Q  + +     L SL   
Sbjct: 50  SFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 105

Query: 280 NISMNALDSSIPS-SFGNMNFLQILDLSNNQLTGEIPEHLA-VSCVNLEFLALSNNNLK- 336
                 L +S+ +   G++  L+ L++++N +           +  NLE L LS+N ++ 
Sbjct: 106 VAVETNL-ASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 337 --GHMFSRNFNLTNLR-SLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGN 393
                      +  L  SL L  N +   I     K   L+ L L+ N L          
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDR 222

Query: 394 LTGLKHIIMPEN 405
           LT L+ I +  N
Sbjct: 223 LTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 63.8 bits (156), Expect = 3e-11
 Identities = 46/222 (20%), Positives = 76/222 (34%), Gaps = 48/222 (21%)

Query: 467 SSLVTLDLSYNRLNGSIPNWV-DGLSQLSHLILGHNNLEGEVPVQLCE-LNQLQLLDLSN 524
            S   LDLS+N L   + ++      +L  L L    ++  +     + L+ L  L L+ 
Sbjct: 28  FSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85

Query: 525 NNLHGPIPP-CFDN----TTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTK 579
           N +   +    F        L     N  SL+ F           P              
Sbjct: 86  NPIQS-LALGAFSGLSSLQKLVAVETNLASLENF-----------PIGH----------- 122

Query: 580 NIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNL 638
                     L  L  L+++ N +     P+   NLT ++ L+LS N +  +  +    L
Sbjct: 123 ----------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 639 KHIE----SLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLS 676
             +     SLDLS N +N  I     +   L   ++  N L 
Sbjct: 173 HQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK 213

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 56/284 (19%), Positives = 90/284 (31%), Gaps = 81/284 (28%)

Query: 76  LQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHF 135
            + L +  N LR    +   +   L++LD+S  ++  +I       L+ +  L+L+ N  
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI 88

Query: 136 QIPISLEP-LFNH-SRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFP 193
           Q   SL    F+  S L+   A    +                    SL +     +   
Sbjct: 89  Q---SLALGAFSGLSSLQKLVAVETNLA-------------------SLENFPIGHLKTL 126

Query: 194 KFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRF 253
           K L     +    +    +   F                   +LT            L  
Sbjct: 127 KELN----VAHNLIQSFKLPEYF------------------SNLTN-----------LEH 153

Query: 254 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGE 313
           LD+S+N  Q  I      +L  +   N+S                    LDLS N +   
Sbjct: 154 LDLSSNKIQ-SIYCTDLRVLHQMPLLNLS--------------------LDLSLNPMN-F 191

Query: 314 IPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGN 357
           I    A   + L+ LAL  N LK         LT+L+ + L  N
Sbjct: 192 IQPG-AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.4 bits (121), Expect = 9e-07
 Identities = 49/246 (19%), Positives = 87/246 (35%), Gaps = 60/246 (24%)

Query: 44  SMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPW-CLANMTSLRI 102
           S P L+ L +S   + T            L HL  L +  N ++ SL     + ++SL+ 
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQS----LSHLSTLILTGNPIQ-SLALGAFSGLSSLQK 104

Query: 103 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNH-SRLKIFDAANNEIK 161
           L      L  S+ + P+ HL +++EL +++N  Q    L   F++ + L+  D ++N+I+
Sbjct: 105 LVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 162 AEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLL 221
                              S+       +     L    DL    ++ +   G F     
Sbjct: 163 -------------------SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ-PGAF----- 197

Query: 222 ENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNI 281
               +L++L L                          N  +  +P  I D L SL    +
Sbjct: 198 -KEIRLKELAL------------------------DTNQLK-SVPDGIFDRLTSLQKIWL 231

Query: 282 SMNALD 287
             N  D
Sbjct: 232 HTNPWD 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 91.0 bits (226), Expect = 7e-20
 Identities = 53/277 (19%), Positives = 95/277 (34%), Gaps = 39/277 (14%)

Query: 254 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGE 313
                +     IP    D+  + I     +  L      +F     L+ +++S N +   
Sbjct: 14  FLCQESKVT-EIP---SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 314 IPEHLAVSCVNLEFLALSNNN----LKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQ-SLS 368
           I   +  +   L  + +   N    +    F    NL NL+ L +    ++  +P     
Sbjct: 70  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQ---NLPNLQYLLISNTGIK-HLPDVHKI 125

Query: 369 KCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISD 428
                  L + +N     I R   +  GL                         IL ++ 
Sbjct: 126 HSLQKVLLDIQDNINIHTIER--NSFVGLSF--------------------ESVILWLNK 163

Query: 429 NNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVD 488
           N I     S F+   +++++LS N    +L    F   S  V LD+S  R++ S+P++  
Sbjct: 164 NGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY-- 220

Query: 489 GLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNN 525
           GL  L  L         ++P  L +L  L    L+  
Sbjct: 221 GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 78.7 bits (194), Expect = 8e-16
 Identities = 46/310 (14%), Positives = 80/310 (25%), Gaps = 89/310 (28%)

Query: 348 NLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHL 407
           + R    + + +  EIP  L    +   L      L             L+ I + +N +
Sbjct: 10  SNRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 408 EGPIPVG-FCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHC 466
              I    F  L  L  + I   N    +                           F + 
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKANNLLYINP-----------------------EAFQNL 103

Query: 467 SSLVTLDLSYNRLNGSIPNWV-DGLSQLSHLILGHNN----LEGEVPVQLCELNQLQLLD 521
            +L  L +S   +   +P+       Q   L +  N     +E    V L    +  +L 
Sbjct: 104 PNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--FESVILW 160

Query: 522 LSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNI 581
           L+ N +       F+ T L E                                       
Sbjct: 161 LNKNGIQEIHNSAFNGTQLDE--------------------------------------- 181

Query: 582 AYIYQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKH 640
                         L+LS N  +  +P  +    +    L++S   +  L      NLK 
Sbjct: 182 --------------LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK 227

Query: 641 IESLDLSYNK 650
           + +      K
Sbjct: 228 LRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.6 bits (147), Expect = 6e-10
 Identities = 43/290 (14%), Positives = 78/290 (26%), Gaps = 67/290 (23%)

Query: 98  TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAAN 157
            +   L     +L   I          +E++ +S N   +   +E         +F    
Sbjct: 30  RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQN--DVLEVIEA-------DVFSNLP 79

Query: 158 NEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFP 217
                              L  + +                            N      
Sbjct: 80  K------------------LHEIRI-------------------------EKANNLLYIN 96

Query: 218 NWLLENNTKLRQLYLVNDSLTG-PFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPS- 275
               +N   L+ L + N  +   P    IHS +    LD+ +N     I       L   
Sbjct: 97  PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ-KVLLDIQDNINIHTIERNSFVGLSFE 155

Query: 276 LISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNL 335
            +   ++ N +     S+F      ++    NN L  E+P  +         L +S   +
Sbjct: 156 SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRI 214

Query: 336 K---GHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNS 382
                +      NL  LR+          ++P +L K  +L    L   S
Sbjct: 215 HSLPSYGLE---NLKKLRARSTYNLK---KLP-TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.2 bits (146), Expect = 1e-09
 Identities = 48/281 (17%), Positives = 86/281 (30%), Gaps = 21/281 (7%)

Query: 221 LENNTKLRQLYL-VNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISF 279
                 L ++ +  ND L         +   L  + +   N   +I  E    LP+L   
Sbjct: 50  FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109

Query: 280 NISMNALDSSIPS-SFGNMNFLQILDLSNNQLTGEIPEHLAVSC-VNLEFLALSNNNLKG 337
            IS   +   +P     +     +LD+ +N     I  +  V        L L+ N ++ 
Sbjct: 110 LISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167

Query: 338 HMFSRNFNLTNLRSLQL-EGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTG 396
            + +  FN T L  L L + N+LE          S    L ++   +       L NL  
Sbjct: 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK 227

Query: 397 LKHIIMPENHLEGPIPVGFCQLYSLQILDISDN-----------NISGSLPSCFHPLSIE 445
           L+                  +L +L    ++              IS   P C   +  +
Sbjct: 228 LRARSTYNLKKLPT----LEKLVALMEASLTYPSHCCAFANWRRQISELHPICNKSILRQ 283

Query: 446 QVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNW 486
           +V         +         S     D++Y   +  + N 
Sbjct: 284 EVDYMTQARGQRSSLAEDNESSYSRGFDMTYTEFDYDLCNE 324

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 28/195 (14%), Positives = 50/195 (25%), Gaps = 58/195 (29%)

Query: 465 HCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSN 524
           HCS+        +++   IP+  D       L      L             L+ +++S 
Sbjct: 8   HCSNR-VFLCQESKVT-EIPS--DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQ 63

Query: 525 NNLHGPIPP-CFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAY 583
           N++   I    F N                                              
Sbjct: 64  NDVLEVIEADVFSN---------------------------------------------- 77

Query: 584 IYQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIE 642
                 L  L  + +     + +I P+   NL  +Q L +S+  +  L      +     
Sbjct: 78  ------LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV 131

Query: 643 SLDLSYNKLNGKIPH 657
            LD+  N     I  
Sbjct: 132 LLDIQDNINIHTIER 146

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 35/220 (15%), Positives = 69/220 (31%), Gaps = 44/220 (20%)

Query: 44  SMPSLKYLSMSDSTLGTNSSRILDQGLCS-LMHLQELYIDNNDLRGSLPWCLANMTSLRI 102
           ++P L  + +  +    N+   ++      L +LQ L I N  ++        +     +
Sbjct: 77  NLPKLHEIRIEKA----NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL 132

Query: 103 LDVSSNQLTGSISSSPLVHLTS-IEELMLSNNHFQIPISLEP-LFNHSRL-KIFDAANNE 159
           LD+  N    +I  +  V L+     L L+ N  Q    +    FN ++L ++  + NN 
Sbjct: 133 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ---EIHNSAFNGTQLDELNLSDNNN 189

Query: 160 IKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNW 219
           ++                    L +            +       + +S        P++
Sbjct: 190 LE-------------------ELPND---------VFHGASGPVILDISR-TRIHSLPSY 220

Query: 220 LLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNN 259
            LEN  KLR     N                L    ++  
Sbjct: 221 GLENLKKLRARSTYNLKKLPTL----EKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 7/74 (9%)

Query: 596 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 655
                +K+   IP  +        L      L  +    FS    +E +++S N +   I
Sbjct: 14  FLCQESKV-TEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 656 P----HQLVELKTL 665
                  L +L  +
Sbjct: 71  EADVFSNLPKLHEI 84

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 91.6 bits (228), Expect = 1e-19
 Identities = 79/460 (17%), Positives = 150/460 (32%), Gaps = 68/460 (14%)

Query: 19  KSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQE 78
             +  LD+      L+ +    +   +   + + + D  L     + +   L     L E
Sbjct: 3   LDIQSLDI--QCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 79  LYIDNNDLRGSLPWCLANM-----TSLRILDVSSNQLT----GSISSSPLVHLTSIEELM 129
           L + +N+L      C+          ++ L + +  LT    G +SS+ L  L +++EL 
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELH 119

Query: 130 LSNNHFQIP----ISLEPLFNHSRLKIFDAANNEIKAEITESHSLT-APNFQLQALSLSS 184
           LS+N         +    L    RL+        + A   E  +         + L++S+
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179

Query: 185 ---GYGDGVTFPKFLYHQHD-LEDVRLSHVNMDGEFPNWL---LENNTKLRQLYLVNDSL 237
                       + L      LE ++L    +  +    L   + +   LR+L L ++ L
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239

Query: 238 TGP-----FRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDIL---PSLISFNISMNALDSS 289
                       +H    LR L +           ++  +L    SL   +++ N L   
Sbjct: 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299

Query: 290 ----IPSSFGNMNF-LQILDLSNNQLTGEIPEHLA---VSCVNLEFLALSNNNLKG---H 338
               +  +       L+ L + +   T     H +        L  L +SNN L+     
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359

Query: 339 MFSR--NFNLTNLRSLQLEGNHLEGE----IPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 392
              +      + LR L L    +       +  +L    SL  L L+NN L         
Sbjct: 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA------ 413

Query: 393 NLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNIS 432
              G+  ++     +  P          L+ L + D   S
Sbjct: 414 ---GILQLV---ESVRQPG-------CLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 87.7 bits (218), Expect = 2e-18
 Identities = 77/458 (16%), Positives = 134/458 (29%), Gaps = 109/458 (23%)

Query: 251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALD----SSIPSSFGNMNFLQILDLS 306
           ++ LD+           E+  +L       +    L       I S+      L  L+L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 307 NNQLTGE----IPEHLAVSCVNLEFLALSNNNLK-------GHMFSRNFNLTNLRSLQLE 355
           +N+L       + + L      ++ L+L N  L                    L+ L L 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL---PTLQELHLS 121

Query: 356 GNHLEGEIPQSLSK-----CSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGP 410
            N L     Q L +        LE L L   SLS      L ++                
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV---------------- 165

Query: 411 IPVGFCQLYSLQILDISDNNISGS----LPSCF--HPLSIEQVHLSKNMLHGQLKRG--- 461
                      + L +S+N+I+ +    L       P  +E + L    +     R    
Sbjct: 166 ----LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221

Query: 462 TFFHCSSLVTLDLSYNRLNGS-----IPNWVDGLSQLSHLILGHNNLEGEVPVQLCEL-- 514
                +SL  L L  N+L         P  +   S+L  L +    +  +    LC +  
Sbjct: 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281

Query: 515 --NQLQLLDLSNNNLH---------GPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMM 563
               L+ L L+ N L            + P     +L   S +                 
Sbjct: 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS----------------- 324

Query: 564 IPAEKQIHENFEFTTKNIAYIYQG-KVLSLLSGLDLSCNKLIGHIPPQIG-----NLTRI 617
                       FT    ++          L  L +S N+L      ++        + +
Sbjct: 325 ------------FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVL 372

Query: 618 QTLNLSHNNLT----GLIPSTFSNLKHIESLDLSYNKL 651
           + L L+  +++      + +T      +  LDLS N L
Sbjct: 373 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 86.6 bits (215), Expect = 6e-18
 Identities = 82/480 (17%), Positives = 148/480 (30%), Gaps = 93/480 (19%)

Query: 98  TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLF----NHSRLKIF 153
             ++ LD+   +L+ +  +  L  L   + + L +         + +      +  L   
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT-EARCKDISSALRVNPALAEL 61

Query: 154 DAANNEIKAEITE--SHSLTAPNFQLQALSLSS---GYGDGVTFPKFLYHQHDLEDVRLS 208
           +  +NE+           L  P+ ++Q LSL +              L     L+++ LS
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 209 HVNMDGE----FPNWLLENNTKLRQLYLVNDSLT----GPFRLPIHSHRWLRFLDVSNNN 260
              +           LL+   +L +L L   SL+     P    + +    + L VSNN+
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 261 FQGHIPVEIGDILP----SLISFNISMNALD----SSIPSSFGNMNFLQILDLSNNQLTG 312
                   +   L      L +  +    +       +     +   L+ L L +N+L  
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241

Query: 313 EIPEHLAV----SCVNLEFLALSNNNLK-------GHMFSRNFNLTNLRSLQLEGNHLEG 361
                L          L  L +    +          +        +L+ L L GN L  
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK---ESLKELSLAGNELGD 298

Query: 362 EIPQSLSK-----CSSLEGLYLNNNSLSGK----IPRWLGNLTGLKHIIMPENHLEGPIP 412
           E  + L +        LE L++ + S +          L     L  + +  N LE    
Sbjct: 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358

Query: 413 VGFCQL-----YSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCS 467
              CQ        L++L ++D ++S    S    L+          L             
Sbjct: 359 RELCQGLGQPGSVLRVLWLADCDVS---DSSCSSLA--------ATLL---------ANH 398

Query: 468 SLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNL 527
           SL  LDLS N L  +      G+ QL    +                  L+ L L +   
Sbjct: 399 SLRELDLSNNCLGDA------GILQLVES-VRQPG------------CLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 65.4 bits (160), Expect = 3e-11
 Identities = 66/375 (17%), Positives = 119/375 (31%), Gaps = 76/375 (20%)

Query: 36  SFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLA 95
              + + +    L+ L +   +L   S   L   L +    +EL + NND+  +    L 
Sbjct: 132 LLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLC 191

Query: 96  -----NMTSLRILDVSSNQLTG---SISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNH 147
                +   L  L + S  +T          +    S+ EL L +N              
Sbjct: 192 QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK------------- 238

Query: 148 SRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSS---GYGDGVTFPKFLYHQHDLED 204
               + D    E+         L  P+ +L+ L +              + L  +  L++
Sbjct: 239 ----LGDVGMAEL------CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 288

Query: 205 VRLSHVNMDGE----FPNWLLENNTKLRQLYLVNDSLTGPFRLPI----HSHRWLRFLDV 256
           + L+   +  E        LLE   +L  L++ + S T             +R+L  L +
Sbjct: 289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI 348

Query: 257 SNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPE 316
           SNN         + D     +        L             L++L L++  ++     
Sbjct: 349 SNNR--------LEDAGVRELC-----QGLGQPGSV-------LRVLWLADCDVSDSSCS 388

Query: 317 HLA---VSCVNLEFLALSNNNLK---GHMFSRNF--NLTNLRSLQLEGNHLEGEIPQSLS 368
            LA   ++  +L  L LSNN L          +       L  L L   +   E+     
Sbjct: 389 SLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM----- 443

Query: 369 KCSSLEGLYLNNNSL 383
               L+ L  +  SL
Sbjct: 444 -EDRLQALEKDKPSL 457

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.9 bits (125), Expect = 6e-07
 Identities = 45/302 (14%), Positives = 79/302 (26%), Gaps = 77/302 (25%)

Query: 420 SLQILDISDNNIS--GSLPSCFHPLSIEQVHLSKNMLHGQ--------LKRGTFFHCSSL 469
            +Q LDI    +S              + V L    L           L+        +L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALR-----VNPAL 58

Query: 470 VTLDLSYNRLNGS-IPNWVDGLS----QLSHLILGHNNLEGEVPVQLCEL----NQLQLL 520
             L+L  N L    +   + GL     ++  L L +  L G     L         LQ L
Sbjct: 59  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118

Query: 521 DLSNNNL---------HGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIH 571
            LS+N L          G + P      L     +                         
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS------------------------- 153

Query: 572 ENFEFTTKNIAYIYQG-KVLSLLSGLDLSCNKLIGHIPPQIG-----NLTRIQTLNLSHN 625
                +  +   +    +       L +S N +       +      +  +++ L L   
Sbjct: 154 ----LSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC 209

Query: 626 NLT----GLIPSTFSNLKHIESLDLSYNKLNGK-----IPHQLVELKTLAVFSVAYNNLS 676
            +T      +    ++   +  L L  NKL         P  L     L    +    ++
Sbjct: 210 GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 269

Query: 677 GE 678
            +
Sbjct: 270 AK 271

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.6 bits (101), Expect = 4e-04
 Identities = 32/210 (15%), Positives = 54/210 (25%), Gaps = 53/210 (25%)

Query: 467 SSLVTLDLSYNRLN-GSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCEL----NQLQLLD 521
             + +LD+    L+       +  L Q   + L    L       +         L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 522 LSNNNL---------HGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHE 572
           L +N L          G   P      L   +                            
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-------------------------- 96

Query: 573 NFEFTTKNIAYIYQG-KVLSLLSGLDLSCNKLIGHIPPQIG-----NLTRIQTLNLSHNN 626
               T      +    + L  L  L LS N L       +         R++ L L + +
Sbjct: 97  ---LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS 153

Query: 627 LT----GLIPSTFSNLKHIESLDLSYNKLN 652
           L+      + S        + L +S N +N
Sbjct: 154 LSAASCEPLASVLRAKPDFKELTVSNNDIN 183

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 88.6 bits (220), Expect = 2e-19
 Identities = 52/200 (26%), Positives = 77/200 (38%), Gaps = 14/200 (7%)

Query: 345 NLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPE 404
            + +   +  +  +L   +P  L        L+L+ N L       L   T L  + +  
Sbjct: 8   KVASHLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 405 NHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLS-IEQVHLSKNMLHGQLKRGTF 463
             L   + V    L  L  LD+S N +  SLP     L  +  + +S N L   L  G  
Sbjct: 65  AELTK-LQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGAL 120

Query: 464 FHCSSLVTLDLSYNRLNGSIPNWV-DGLSQLSHLILGHNNLEGEVPVQLCE-LNQLQLLD 521
                L  L L  N L  ++P  +     +L  L L +NNL  E+P  L   L  L  L 
Sbjct: 121 RGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLL 178

Query: 522 LSNNNLHGPIPP-CFDNTTL 540
           L  N+L+  IP   F +  L
Sbjct: 179 LQENSLYT-IPKGFFGSHLL 197

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 82.5 bits (204), Expect = 2e-17
 Identities = 46/185 (24%), Positives = 72/185 (38%), Gaps = 14/185 (7%)

Query: 225 TKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMN 284
                L+L  + L       +  +  L  L++        + V     LP L + ++S N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLDLSHN 87

Query: 285 ALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLK---GHMFS 341
            L  S+P     +  L +LD+S N+LT  +P         L+ L L  N LK     + +
Sbjct: 88  QL-QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 342 RNFNLTNLRSLQLEGNHLEGEIPQSL-SKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHI 400
                  L  L L  N+L  E+P  L +   +L+ L L  NSL   IP+       L   
Sbjct: 146 P---TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFA 200

Query: 401 IMPEN 405
            +  N
Sbjct: 201 FLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 81.7 bits (202), Expect = 4e-17
 Identities = 52/212 (24%), Positives = 78/212 (36%), Gaps = 14/212 (6%)

Query: 293 SFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSL 352
               +     ++     LT  +P  L     +   L LS N L     +     T L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 353 QLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIP 412
            L+   L  ++         L  L L++N L   +P     L  L  + +  N L   +P
Sbjct: 61  NLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LP 116

Query: 413 VG-FCQLYSLQILDISDNNISGSLPS-CFHPLS-IEQVHLSKNMLHGQLKRGTFFHCSSL 469
           +G    L  LQ L +  N +  +LP     P   +E++ L+ N L  +L  G      +L
Sbjct: 117 LGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENL 174

Query: 470 VTLDLSYNRLNGSIPNWVDGLSQLSHLILGHN 501
            TL L  N L  +IP    G   L    L  N
Sbjct: 175 DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 72.8 bits (179), Expect = 3e-14
 Identities = 41/184 (22%), Positives = 69/184 (37%), Gaps = 8/184 (4%)

Query: 271 DILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLAL 330
           D+       ++S N L +   ++      L  L+L   +LT ++   +  +   L  L L
Sbjct: 28  DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ--VDGTLPVLGTLDL 84

Query: 331 SNNNLKGHMFSRNF-NLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPR 389
           S+N L+          L  L  L +  N L      +L     L+ LYL  N L    P 
Sbjct: 85  SHNQLQ--SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142

Query: 390 WLGNLTGLKHIIMPENHLEGPIPVG-FCQLYSLQILDISDNNISGSLPSCFHPLSIEQVH 448
            L     L+ + +  N+L   +P G    L +L  L + +N++       F    +    
Sbjct: 143 LLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF 201

Query: 449 LSKN 452
           L  N
Sbjct: 202 LHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 66.3 bits (162), Expect = 5e-12
 Identities = 48/204 (23%), Positives = 72/204 (35%), Gaps = 42/204 (20%)

Query: 467 SSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNN 526
                L LS N L       +   ++L+ L L    L  ++ V    L  L  LDLS+N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQ 88

Query: 527 LHGPIPPCFDN----TTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIA 582
           L   +P         T L  S N   SL        +                       
Sbjct: 89  LQS-LPLLGQTLPALTVLDVSFNRLTSLPLG----ALRG--------------------- 122

Query: 583 YIYQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHI 641
                  L  L  L L  N+L   +PP +     +++ L+L++NNLT L     + L+++
Sbjct: 123 -------LGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174

Query: 642 ESLDLSYNKLNGKIPHQLVELKTL 665
           ++L L  N L   IP        L
Sbjct: 175 DTLLLQENSLYT-IPKGFFGSHLL 197

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 51/233 (21%), Positives = 76/233 (32%), Gaps = 62/233 (26%)

Query: 420 SLQILDISDNNISGSLPSCFHPLS-IEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNR 478
              IL +S+N +     +   P + + Q++L +  L    K         L TLDLS+N+
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLPVLGTLDLSHNQ 88

Query: 479 LNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPP-CFDN 537
           L  S+P     L  L+ L +  N L       L  L +LQ L L  N L   +PP     
Sbjct: 89  LQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTP 146

Query: 538 TTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLD 597
           T           L                                     + LSL     
Sbjct: 147 TP---------KL-------------------------------------EKLSL----- 155

Query: 598 LSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 649
            + N L   +P  +   L  + TL L  N+L  +    F +   +    L  N
Sbjct: 156 -ANNNL-TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL-LPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 40/173 (23%), Positives = 59/173 (34%), Gaps = 48/173 (27%)

Query: 517 LQLLDLSNNNLHGPIPPCFDN----TTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHE 572
             +L LS N L+             T L+        L+   T                 
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT----------------- 75

Query: 573 NFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIP 632
                            L +L  LDLS N+L   +P     L  +  L++S N LT L  
Sbjct: 76  -----------------LPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 633 STFSNLKHIESLDLSYNKLNGKIPH----QLVELKTLAVFSVAYNNLSGEIPE 681
                L  ++ L L  N+L   +P        +L+ L   S+A NNL+ E+P 
Sbjct: 118 GALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKL---SLANNNLT-ELPA 165

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 49/247 (19%), Positives = 85/247 (34%), Gaps = 54/247 (21%)

Query: 68  QGLCSLMHLQELYIDNNDLRGSLPWCLANM-TSLRILDVSSNQLTGSISSSPLVHLTSIE 126
             + S     E+  D  +L  +LP    ++     IL +S N L  + S + L+  T + 
Sbjct: 7   SKVASH---LEVNCDKRNLT-ALP---PDLPKDTTILHLSENLLY-TFSLATLMPYTRLT 58

Query: 127 ELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGY 186
           +L L          L+       L   D ++N++++      +L      L  L +S   
Sbjct: 59  QLNLDRAELT---KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP----ALTVLDVSF-- 109

Query: 187 GDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLT----GPF- 241
                                   N     P   L    +L++LYL  + L     G   
Sbjct: 110 ------------------------NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 242 RLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQ 301
             P      L  L ++NNN    +P  + + L +L +  +  N+L +     FG+   L 
Sbjct: 146 PTPK-----LEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL-LP 198

Query: 302 ILDLSNN 308
              L  N
Sbjct: 199 FAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 13/132 (9%)

Query: 7   NGLVRGQGFPHFKSLDHLDMVFAR-TALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRI 65
             L + Q       L  LD+   +  +L         +++P+L  L +S + L +     
Sbjct: 65  AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG-----QTLPALTVLDVSFNRLTSLPLGA 119

Query: 66  LDQGLCSLMHLQELYIDNNDLRGSLP-WCLANMTSLRILDVSSNQLTGSISSSPLVHLTS 124
           L      L  LQELY+  N+L+ +LP   L     L  L +++N LT  + +  L  L +
Sbjct: 120 LRG----LGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLEN 173

Query: 125 IEELMLSNNHFQ 136
           ++ L+L  N   
Sbjct: 174 LDTLLLQENSLY 185

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 87.3 bits (216), Expect = 7e-19
 Identities = 57/304 (18%), Positives = 88/304 (28%), Gaps = 17/304 (5%)

Query: 93  CLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKI 152
           C  N +  +    S+    G+          S+E L+   +          +     LK 
Sbjct: 13  CSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKR 72

Query: 153 FDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQH-DLEDVRLSHVN 211
                  I + I            LQ L+L +    G   P  L     DL  + L +V+
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 212 MDGEFPNWLLE----NNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPV 267
                  WL E        L+ L +            +     L  LD+S+N   G   +
Sbjct: 133 WAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191

Query: 268 E---IGDILPSLISFNISMNALDS---SIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVS 321
                    P+L    +    +++      +       LQ LDLS+N L           
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 322 CVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNN 381
              L  L LS   L      +      L  L L  N L+   P    +   +  L L  N
Sbjct: 252 PSQLNSLNLSFTGL--KQVPKGL-PAKLSVLDLSYNRLD-RNPSPD-ELPQVGNLSLKGN 306

Query: 382 SLSG 385
               
Sbjct: 307 PFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.5 bits (201), Expect = 6e-17
 Identities = 64/366 (17%), Positives = 106/366 (28%), Gaps = 94/366 (25%)

Query: 279 FNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGH 338
           ++ + N L ++    +G    L+ L    +           +  ++L+ L +    +   
Sbjct: 24  WSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSR 83

Query: 339 MFS---RNFNLTNLRSLQLEGNHLEGEIPQSLSKCS--SLEGLYLNNNSLSGKIPRWLGN 393
           +     R   ++ L+ L LE   + G  P  L + +   L  L L N S +     WL  
Sbjct: 84  ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAE 142

Query: 394 L-----TGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVH 448
           L      GLK + + + H             +L  LD+SDN   G               
Sbjct: 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG------------ 190

Query: 449 LSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVP 508
           L   +   +          +L  L L    +                         G   
Sbjct: 191 LISALCPLKF--------PTLQVLALRNAGME---------------------TPSGVCS 221

Query: 509 VQLCELNQLQLLDLSNNNLHGPIPP--CFDNTTLHE---SSNNSYSLKPFETSLVMDSMM 563
                  QLQ LDLS+N+L        C   + L+    S                    
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT------------------ 263

Query: 564 IPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLS 623
                 + +  +                 LS LDLS N+L     P    L ++  L+L 
Sbjct: 264 -----GLKQVPKGLPAK------------LSVLDLSYNRL--DRNPSPDELPQVGNLSLK 304

Query: 624 HNNLTG 629
            N    
Sbjct: 305 GNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 80.3 bits (198), Expect = 2e-16
 Identities = 58/344 (16%), Positives = 98/344 (28%), Gaps = 86/344 (25%)

Query: 345 NLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW---LGNLTGLKHII 401
             +    L+      +      + K  SL+ L +    +  +I      +  ++GL+ + 
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101

Query: 402 MPENHLEG--PIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLK 459
           +    + G  P P+       L IL++ + + +                         L 
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW--------------------LA 141

Query: 460 RGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPV----QLCELN 515
               +    L  L ++           V     LS L L  N   GE  +       +  
Sbjct: 142 ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP 201

Query: 516 QLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFE 575
            LQ+L L N  +  P   C                                         
Sbjct: 202 TLQVLALRNAGMETPSGVCSALAAA----------------------------------- 226

Query: 576 FTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPST 634
                            L GLDLS N L            +++ +LNLS   L  +    
Sbjct: 227 --------------RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL 272

Query: 635 FSNLKHIESLDLSYNKLNGK-IPHQLVELKTLAVFSVAYNNLSG 677
            + L     LDLSYN+L+    P +L ++  L   S+  N    
Sbjct: 273 PAKL---SVLDLSYNRLDRNPSPDELPQVGNL---SLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.0 bits (153), Expect = 8e-11
 Identities = 29/182 (15%), Positives = 63/182 (34%), Gaps = 11/182 (6%)

Query: 8   GLVRGQGFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILD 67
           G +R  G    + L   ++        T+   ++  + P L  L++ + +  T  + + +
Sbjct: 87  GALRVLGISGLQELTLENLEV----TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAE 142

Query: 68  QGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSIS---SSPLVHLTS 124
                   L+ L I            +    +L  LD+S N   G      +   +   +
Sbjct: 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPT 202

Query: 125 IEELMLSNNHFQIPISLEP--LFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSL 182
           ++ L L N   + P  +         +L+  D ++N ++               L +L+L
Sbjct: 203 LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ--LNSLNL 260

Query: 183 SS 184
           S 
Sbjct: 261 SF 262

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 11/105 (10%)

Query: 593 LSGLDLSCNKLIGH--IPPQIGNL--TRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSY 648
           L+ L+L             ++       ++ L+++  +              + +LDLS 
Sbjct: 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182

Query: 649 NKLNGKI-------PHQLVELKTLAVFSVAYNNLSGEIPEWTAQF 686
           N   G+        P +   L+ LA+ +      SG      A  
Sbjct: 183 NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.2 bits (188), Expect = 6e-16
 Identities = 25/161 (15%), Positives = 56/161 (34%), Gaps = 8/161 (4%)

Query: 273 LPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSN 332
           + SL    ++   + + + +     + ++ L ++N   T      ++    NLE L +  
Sbjct: 43  MNSLTYITLANINV-TDL-TGIEYAHNIKDLTINNIHATN--YNPIS-GLSNLERLRIMG 97

Query: 333 NNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 392
            ++          LT+L  L +  +  +  I   ++    +  + L+ N     I   L 
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LK 156

Query: 393 NLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISG 433
            L  LK + +  + +     +       L  L      I G
Sbjct: 157 TLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.0 bits (172), Expect = 7e-14
 Identities = 31/209 (14%), Positives = 73/209 (34%), Gaps = 35/209 (16%)

Query: 273 LPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSN 332
             + ++  +  ++       +   MN L  + L+N  +T ++   +     N++ L ++N
Sbjct: 22  FKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT-DL-TGIE-YAHNIKDLTINN 75

Query: 333 NNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 392
            +     ++    L+NL  L++ G  +  +   +LS  +SL  L +++++    I   + 
Sbjct: 76  IHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 393 NLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKN 452
            L  +  I +  N     I      L  L+ L+I  + +       +  +          
Sbjct: 134 TLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-----YRGIE--------- 178

Query: 453 MLHGQLKRGTFFHCSSLVTLDLSYNRLNG 481
                           L  L      + G
Sbjct: 179 ------------DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.4 bits (168), Expect = 3e-13
 Identities = 32/242 (13%), Positives = 69/242 (28%), Gaps = 83/242 (34%)

Query: 412 PVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVT 471
            +   Q+ SL  + +++ N++           +    +               +  ++  
Sbjct: 37  NITEAQMNSLTYITLANINVT----------DLT--GIE--------------YAHNIKD 70

Query: 472 LDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPI 531
           L ++        P  + GLS L  L +   ++  +    L  L  L LLD+S++     I
Sbjct: 71  LTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 532 PPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLS 591
               +                                                     L 
Sbjct: 129 LTKINT----------------------------------------------------LP 136

Query: 592 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL 651
            ++ +DLS N  I  I P +  L  +++LN+  + +         +   +  L      +
Sbjct: 137 KVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTI 193

Query: 652 NG 653
            G
Sbjct: 194 GG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 32/191 (16%), Positives = 64/191 (33%), Gaps = 40/191 (20%)

Query: 488 DGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHG--PIPPCFDNTTLHESSN 545
                  + +LG ++      +   ++N L  + L+N N+     I    +   L  ++ 
Sbjct: 20  STFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNI 76

Query: 546 NSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG 605
           ++ +  P                                     LS L  L +    +  
Sbjct: 77  HATNYNPISG----------------------------------LSNLERLRIMGKDVTS 102

Query: 606 HIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTL 665
              P +  LT +  L++SH+     I +  + L  + S+DLSYN     I   L  L  L
Sbjct: 103 DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPEL 161

Query: 666 AVFSVAYNNLS 676
              ++ ++ + 
Sbjct: 162 KSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 14/142 (9%)

Query: 43  ESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRI 102
           E   ++K L++++      +       +  L +L+ L I   D+       L+ +TSL +
Sbjct: 63  EYAHNIKDLTINNIHATNYN------PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116

Query: 103 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKA 162
           LD+S +        + +  L  +  + LS N   I   + PL     LK  +   + +  
Sbjct: 117 LDISHSAHD-DSILTKINTLPKVNSIDLSYNG-AIT-DIMPLKTLPELKSLNIQFDGVH- 172

Query: 163 EITESHSLTAPNFQLQALSLSS 184
           +            +L  L   S
Sbjct: 173 DYRGIEDFP----KLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 4e-09
 Identities = 28/142 (19%), Positives = 51/142 (35%), Gaps = 7/142 (4%)

Query: 221 LENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFN 280
           +E    ++ L + N   T     PI     L  L +   +        +   L SL   +
Sbjct: 62  IEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSG-LTSLTLLD 118

Query: 281 ISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMF 340
           IS +A D SI +    +  +  +DLS N    +I   L  +   L+ L +  + +    +
Sbjct: 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLK-TLPELKSLNIQFDGVHD--Y 174

Query: 341 SRNFNLTNLRSLQLEGNHLEGE 362
               +   L  L      + G+
Sbjct: 175 RGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 5e-09
 Identities = 16/90 (17%), Positives = 37/90 (41%), Gaps = 2/90 (2%)

Query: 590 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 649
              +  L ++      +  P I  L+ ++ L +   ++T       S L  +  LD+S++
Sbjct: 65  AHNIKDLTINNIH-ATNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 650 KLNGKIPHQLVELKTLAVFSVAYNNLSGEI 679
             +  I  ++  L  +    ++YN    +I
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 8e-09
 Identities = 32/224 (14%), Positives = 67/224 (29%), Gaps = 73/224 (32%)

Query: 95  ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFD 154
           A M SL  + +++  +T     + + +  +I++L ++N H     +  P+   S L+   
Sbjct: 41  AQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNIHAT---NYNPISGLSNLERLR 94

Query: 155 AANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDG 214
               ++ ++   +                                               
Sbjct: 95  IMGKDVTSDKIPN----------------------------------------------- 107

Query: 215 EFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDI-- 272
                 L   T L  L + + +        I++   +  +D+S N         I DI  
Sbjct: 108 ------LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG-------AITDIMP 154

Query: 273 ---LPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGE 313
              LP L S NI  + +         +   L  L   +  + G+
Sbjct: 155 LKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 28/215 (13%), Positives = 69/215 (32%), Gaps = 55/215 (25%)

Query: 343 NFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIM 402
           N   +  ++              + ++ +SL  + L N +++        +LTG+++   
Sbjct: 16  NIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT--------DLTGIEY--- 64

Query: 403 PENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGT 462
                           ++++ L I++ + +   P                          
Sbjct: 65  ---------------AHNIKDLTINNIHATNYNP-------------------------- 83

Query: 463 FFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDL 522
               S+L  L +    +       + GL+ L+ L + H+  +  +  ++  L ++  +DL
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143

Query: 523 SNNNLHGPIPPCFDNTTLHE---SSNNSYSLKPFE 554
           S N     I P      L       +  +  +  E
Sbjct: 144 SYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIE 178

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 16/102 (15%), Positives = 42/102 (41%), Gaps = 5/102 (4%)

Query: 580 NIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLK 639
           + A I + + ++ L+ + L+    +  +   I     I+ L +++ + T    +  S L 
Sbjct: 34  STANITEAQ-MNSLTYITLANIN-VTDLTG-IEYAHNIKDLTINNIHATNY--NPISGLS 88

Query: 640 HIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPE 681
           ++E L +    +       L  L +L +  ++++     I  
Sbjct: 89  NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 80.5 bits (198), Expect = 7e-16
 Identities = 47/296 (15%), Positives = 106/296 (35%), Gaps = 59/296 (19%)

Query: 60  TNSSRILD-QGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSP 118
           T S+ I       +     +  +    +  ++      + S+  +  +++ +    S   
Sbjct: 6   TVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK---SVQG 60

Query: 119 LVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQ 178
           + +L ++ +L L+ N  ++   ++PL N   L       N+IK +++    L     +L+
Sbjct: 61  IQYLPNVTKLFLNGN--KL-TDIKPLTNLKNLGWLFLDENKIK-DLSSLKDLK----KLK 112

Query: 179 ALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLT 238
           +LSL     +G++         D+                  L +  +L  LYL N+ +T
Sbjct: 113 SLSLE---HNGIS---------DING----------------LVHLPQLESLYLGNNKIT 144

Query: 239 GPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDI-----LPSLISFNISMNALDSSIPSS 293
                 +     L  L + +N         I DI     L  L +  +S N + S +  +
Sbjct: 145 DI--TVLSRLTKLDTLSLEDNQ--------ISDIVPLAGLTKLQNLYLSKNHI-SDL-RA 192

Query: 294 FGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNL 349
              +  L +L+L + +   +   H +   V         + +   + S + +    
Sbjct: 193 LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKP 248

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.4 bits (195), Expect = 2e-15
 Identities = 46/330 (13%), Positives = 97/330 (29%), Gaps = 58/330 (17%)

Query: 373 LEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNIS 432
           +      +  +    P             + +  +   +     +L S+  +  ++++I 
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 433 GSLPSCFHPLSIEQVHLSKNMLHGQLKR-GTFFHCSSLVTLDLSYNRLNGSIPNWVDGLS 491
            S+    +  ++ ++ L+ N    +L       +  +L  L L  N++   + + +  L 
Sbjct: 57  -SVQGIQYLPNVTKLFLNGN----KLTDIKPLTNLKNLGWLFLDENKIK-DLSS-LKDLK 109

Query: 492 QLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDN----TTLHESSNNS 547
           +L  L L HN +  ++   L  L QL+ L L NN +               TL    N  
Sbjct: 110 KLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQI 165

Query: 548 YSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHI 607
             + P                                     L+ L  L LS N  I  +
Sbjct: 166 SDIVPLAG----------------------------------LTKLQNLYLSKNH-ISDL 190

Query: 608 PPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAV 667
              +  L  +  L L          +  SNL    ++  +   L    P  + +      
Sbjct: 191 RA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TPEIISDDGDYEK 247

Query: 668 FSVAYNNLSGEIPEWTAQFATFNESSYEGN 697
            +V ++            +        +  
Sbjct: 248 PNVKWHLPEFTNEVSFIFYQPVTIGKAKAR 277

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 75.1 bits (184), Expect = 3e-14
 Identities = 43/217 (19%), Positives = 87/217 (40%), Gaps = 26/217 (11%)

Query: 221 LENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDI-----LPS 275
           ++    + +L+L  + LT     P+ + + L +L +  N         I D+     L  
Sbjct: 61  IQYLPNVTKLFLNGNKLTDIK--PLTNLKNLGWLFLDENK--------IKDLSSLKDLKK 110

Query: 276 LISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNL 335
           L S ++  N + S I +   ++  L+ L L NN++T      L+     L+ L+L +N +
Sbjct: 111 LKSLSLEHNGI-SDI-NGLVHLPQLESLYLGNNKIT--DITVLS-RLTKLDTLSLEDNQI 165

Query: 336 KGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLT 395
                     LT L++L L  NH+  ++ ++L+   +L+ L L +     K      NL 
Sbjct: 166 SD--IVPLAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLV 221

Query: 396 GLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNIS 432
               +   +  L  P  +        +  ++  +   
Sbjct: 222 VPNTVKNTDGSLVTPEII--SDDGDYEKPNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 74.0 bits (181), Expect = 9e-14
 Identities = 47/288 (16%), Positives = 108/288 (37%), Gaps = 30/288 (10%)

Query: 43  ESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRI 102
           ++       ++   ++    +         L  + ++  +N+D++ S+   +  + ++  
Sbjct: 18  DAFAETIKDNLKKKSVTDAVT------QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTK 69

Query: 103 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKA 162
           L ++ N+LT      PL +L ++  L L  N  +I   L  L +  +LK     +N I  
Sbjct: 70  LFLNGNKLT---DIKPLTNLKNLGWLFLDEN--KI-KDLSSLKDLKKLKSLSLEHNGIS- 122

Query: 163 EITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLE 222
           +I     L     QL++L L     + +T    L     L+ + L    +    P   L 
Sbjct: 123 DINGLVHLP----QLESLYLG---NNKITDITVLSRLTKLDTLSLEDNQISDIVP---LA 172

Query: 223 NNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGD--ILPSLISFN 280
             TKL+ LYL  + ++      +   + L  L++ +            +  +  ++ + +
Sbjct: 173 GLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 230

Query: 281 ISMNALDS-SIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEF 327
            S+   +  S    +   N    L    N+++    + + +      F
Sbjct: 231 GSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARF 278

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.8 bits (178), Expect = 2e-13
 Identities = 48/314 (15%), Positives = 95/314 (30%), Gaps = 87/314 (27%)

Query: 76  LQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHF 135
           + E    +  ++   P            ++    +T    +     L SI++++ +N+  
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDI 55

Query: 136 QIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKF 195
           +   S++ +                         L      +  L L+            
Sbjct: 56  K---SVQGI-----------------------QYLP----NVTKLFLN------------ 73

Query: 196 LYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRL-PIHSHRWLRFL 254
                     +L+ +          L N   L  L+L  + +     L  +   + L+ L
Sbjct: 74  --------GNKLTDIKP--------LTNLKNLGWLFLDENKIK---DLSSLKDLKKLKSL 114

Query: 255 DVSNNNFQGHIPVEIGDI-----LPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQ 309
            + +N         I DI     LP L S  +  N +  +  +    +  L  L L +NQ
Sbjct: 115 SLEHNG--------ISDINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQ 164

Query: 310 LTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSK 369
           ++ +I          L+ L LS N++          L NL  L+L       +     S 
Sbjct: 165 IS-DIVPL--AGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSN 219

Query: 370 CSSLEGLYLNNNSL 383
                 +   + SL
Sbjct: 220 LVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 63.6 bits (154), Expect = 2e-10
 Identities = 33/188 (17%), Positives = 73/188 (38%), Gaps = 34/188 (18%)

Query: 2   FDCKVNGLVRGQGFPHFKSLDHLDMVFARTALNTSFLQIIR----ESMPSLKYLSMSDST 57
                + +   QG  +  ++  L +         +  ++       ++ +L +L + ++ 
Sbjct: 48  IIANNSDIKSVQGIQYLPNVTKLFL---------NGNKLTDIKPLTNLKNLGWLFLDEN- 97

Query: 58  LGTNSSRILD-QGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISS 116
                 +I D   L  L  L+ L +++N +   +   L ++  L  L + +N++T     
Sbjct: 98  ------KIKDLSSLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKIT---DI 146

Query: 117 SPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQ 176
           + L  LT ++ L L +N       + PL   ++L+    + N I  ++     L      
Sbjct: 147 TVLSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLYLSKNHIS-DLRALAGLK----N 198

Query: 177 LQALSLSS 184
           L  L L S
Sbjct: 199 LDVLELFS 206

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 75.0 bits (185), Expect = 3e-15
 Identities = 45/258 (17%), Positives = 88/258 (34%), Gaps = 47/258 (18%)

Query: 254 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPS-SFGNMNFLQILDLS-NNQLT 311
             V+  + Q      I  + PS  +  +    L  +IPS +F N+  +  + +S +  L 
Sbjct: 16  FRVTCKDIQ-----RIPSLPPSTQTLKLIETHL-RTIPSHAFSNLPNISRIYVSIDVTLQ 69

Query: 312 GEIPEHLAVSCVNLEFLALSNNN----LKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQ-- 365
            ++  H   +   +  + + N      +          L  L+ L +    L+   P   
Sbjct: 70  -QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK---ELPLLKFLGIFNTGLK-MFPDLT 124

Query: 366 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILD 425
            +        L + +N     IP       GL +                        L 
Sbjct: 125 KVYSTDIFFILEITDNPYMTSIPV--NAFQGLCN--------------------ETLTLK 162

Query: 426 ISDNNISGSLPSC-FHPLSIEQVHLSKNMLHGQLKRGTFFH-CSSLVTLDLSYNRLNGSI 483
           + +N  + S+    F+   ++ V+L+KN     + +  F    S    LD+S   +  ++
Sbjct: 163 LYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-AL 220

Query: 484 PNWVDGLSQLSHLILGHN 501
           P+   GL  L  LI  + 
Sbjct: 221 PS--KGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 48/261 (18%), Positives = 84/261 (32%), Gaps = 64/261 (24%)

Query: 300 LQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNN----LKGHMFSRNFNLTNLRSLQLE 355
            Q L L    L   IP H   +  N+  + +S +     L+ H F    NL+ +  +++ 
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY---NLSKVTHIEIR 88

Query: 356 GNHLEGEIPQS-LSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG 414
                  I    L +   L+ L + N               GLK           P    
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNT--------------GLKMF---------PDLTK 125

Query: 415 FCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFH-CSSLVTLD 473
                   IL+I+DN    S+P                          F   C+  +TL 
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPV-----------------------NAFQGLCNETLTLK 162

Query: 474 LSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCE--LNQLQLLDLSNNNLHGPI 531
           L  N    S+  +    ++L  + L  N     +         +   LLD+S  ++   +
Sbjct: 163 LYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-L 220

Query: 532 PP-CFDN-TTLHESSNNSYSL 550
           P    ++   L   + N+++L
Sbjct: 221 PSKGLEHLKELI--ARNTWTL 239

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 38/234 (16%), Positives = 84/234 (35%), Gaps = 36/234 (15%)

Query: 420 SLQILDISDNNISGSLPSCFHPLS-IEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNR 478
           S Q L + + ++       F  L  I ++++S ++   QL+  +F++ S +  +++   R
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 479 LNGSIPNWV-DGLSQLSHLILGHNNLEGEVP--VQLCELNQLQLLDLSNNNLHGPIPP-C 534
               I       L  L  L + +  L+   P   ++   +   +L++++N     IP   
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 535 FDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLS 594
           F              L     +L + +        +     F              + L 
Sbjct: 151 FQG------------LCNETLTLKLYNNGF---TSVQGYA-FN------------GTKLD 182

Query: 595 GLDLSCNKLIGHIPPQI--GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDL 646
            + L+ NK +  I      G  +    L++S  ++T L      +LK + + + 
Sbjct: 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 35/241 (14%), Positives = 80/241 (33%), Gaps = 60/241 (24%)

Query: 414 GFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLD 473
             C+ +  +   ++  +I   +PS   P S + + L +  L   +    F +  ++  + 
Sbjct: 6   PPCECHQEEDFRVTCKDIQ-RIPSL--PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIY 61

Query: 474 LSYNRLNGSIPNWV-DGLSQLSHLILGHNNLEGEVPVQLCE-LNQLQLLDLSNNNLHGPI 531
           +S +     + +     LS+++H+ + +      +     + L  L+ L + N  L    
Sbjct: 62  VSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK--- 118

Query: 532 PPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLS 591
                                          M P   +++                    
Sbjct: 119 -------------------------------MFPDLTKVYS-----------------TD 130

Query: 592 LLSGLDLSCNKLIGHIPPQI--GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 649
           +   L+++ N  +  IP     G      TL L +N  T +    F+  K ++++ L+ N
Sbjct: 131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTK-LDAVYLNKN 189

Query: 650 K 650
           K
Sbjct: 190 K 190

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 59.6 bits (145), Expect = 5e-10
 Identities = 31/153 (20%), Positives = 55/153 (35%), Gaps = 7/153 (4%)

Query: 251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIP--SSFGNMNFLQILDLSNN 308
           +  +++ N     +I  +    LP L    I    L    P  +   + +   IL++++N
Sbjct: 82  VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITDN 140

Query: 309 QLTGEIPEHLAVSCVN-LEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSL 367
                IP +      N    L L NN     +    FN T L ++ L  N     I +  
Sbjct: 141 PYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDA 199

Query: 368 --SKCSSLEGLYLNNNSLSGKIPRWLGNLTGLK 398
                S    L ++  S++    + L +L  L 
Sbjct: 200 FGGVYSGPSLLDVSQTSVTALPSKGLEHLKELI 232

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 5/96 (5%)

Query: 590 LSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNN-LTGLIPSTFSNLKHIESLDLS 647
           L  +S + +S +  +  +      NL+++  + + +   LT + P     L  ++ L + 
Sbjct: 54  LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113

Query: 648 YNKLNGKIPHQ--LVELKTLAVFSVAYNNLSGEIPE 681
              L    P    +       +  +  N     IP 
Sbjct: 114 NTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 38/241 (15%), Positives = 87/241 (36%), Gaps = 42/241 (17%)

Query: 46  PSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPW-CLANMTSLRILD 104
           PS + L + ++ L      I      +L ++  +Y+  +     L      N++ +  ++
Sbjct: 31  PSTQTLKLIETHL----RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIE 86

Query: 105 VSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEI 164
           + + +    I    L  L  ++ L + N   ++   L  +++     I +  +N      
Sbjct: 87  IRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP----- 141

Query: 165 TESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENN 224
                       + ++ +++          F    ++   ++L + N       +   N 
Sbjct: 142 -----------YMTSIPVNA----------FQGLCNETLTLKLYN-NGFTSVQGYAF-NG 178

Query: 225 TKLRQLYLV-NDSLTGPFRLPIHS----HRWLRFLDVSNNNFQGHIPVEIGDILPSLISF 279
           TKL  +YL  N  LT    +   +    +     LDVS  +    +P +  + L  LI+ 
Sbjct: 179 TKLDAVYLNKNKYLT---VIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIAR 234

Query: 280 N 280
           N
Sbjct: 235 N 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 8/74 (10%)

Query: 596 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 655
             ++C  +   IP         QTL L   +L  +    FSNL +I  + +S +    ++
Sbjct: 16  FRVTCKDI-QRIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL 71

Query: 656 P----HQLVELKTL 665
                + L ++  +
Sbjct: 72  ESHSFYNLSKVTHI 85

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 76.3 bits (188), Expect = 3e-15
 Identities = 50/314 (15%), Positives = 101/314 (32%), Gaps = 56/314 (17%)

Query: 345 NLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPE 404
            L N   +    +++   +    +    +  L      ++      +  L  L  + + +
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72

Query: 405 NHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFF 464
           N +    P     L  +  L++S N +  ++ +     SI+ + L+   +          
Sbjct: 73  NQITDLAP--LKNLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQITDV---TPLA 126

Query: 465 HCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSN 524
             S+L  L L  N++  +I   + GL+ L +L +G+  +    P  L  L++L  L   +
Sbjct: 127 GLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADD 182

Query: 525 NNLHGPIPPCFDNTTLHE---SSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNI 581
           N +   I P      L E    +N    + P                             
Sbjct: 183 NKISD-ISPLASLPNLIEVHLKNNQISDVSPLAN-------------------------- 215

Query: 582 AYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLI-PSTFSNLKH 640
                    S L  + L+   +         NL      N+        I P+T S+   
Sbjct: 216 --------TSNLFIVTLTNQTITNQPVFYNNNLV---VPNVVKGPSGAPIAPATISDNGT 264

Query: 641 IESLDLSYNKLNGK 654
             S +L++N  +  
Sbjct: 265 YASPNLTWNLTSFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.0 bits (177), Expect = 9e-14
 Identities = 45/296 (15%), Positives = 96/296 (32%), Gaps = 61/296 (20%)

Query: 93  CLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKI 152
               + +   +    + +T    +     L  I  L           ++E +   + L  
Sbjct: 14  PDPALANAIKIAAGKSNVT---DTVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIG 67

Query: 153 FDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNM 212
            +  +N+I  ++    +LT    ++  L LS                       L +V+ 
Sbjct: 68  LELKDNQIT-DLAPLKNLT----KITELELSGN--------------------PLKNVSA 102

Query: 213 DGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDI 272
                   +     ++ L L +  +T    L   S+  L+ L +  N         I +I
Sbjct: 103 --------IAGLQSIKTLDLTSTQITDVTPLAGLSN--LQVLYLDLNQ--------ITNI 144

Query: 273 -----LPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEF 327
                L +L   +I    + S + +   N++ L  L   +N+++ +I      S  NL  
Sbjct: 145 SPLAGLTNLQYLSIGNAQV-SDL-TPLANLSKLTTLKADDNKIS-DISPL--ASLPNLIE 199

Query: 328 LALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSL 383
           + L NN +     S   N +NL  + L    +  +     +       +   + + 
Sbjct: 200 VHLKNNQIS--DVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 53/296 (17%), Positives = 107/296 (36%), Gaps = 37/296 (12%)

Query: 60  TNSSRILD-QGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSP 118
           T  + I       +L +  ++    +++  ++    A++  +  L      +T   +   
Sbjct: 4   TQPTAINVIFPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT---TIEG 58

Query: 119 LVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQ 178
           + +L ++  L L +N       L PL N +++   + + N +K  ++    L      ++
Sbjct: 59  VQYLNNLIGLELKDNQIT---DLAPLKNLTKITELELSGNPLK-NVSAIAGLQ----SIK 110

Query: 179 ALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLT 238
            L L+S     +T    L    +L+ + L   N         L   T L+ L + N  ++
Sbjct: 111 TLDLTST---QITDVTPLAGLSNLQVLYLDL-NQITNISP--LAGLTNLQYLSIGNAQVS 164

Query: 239 GPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDI-----LPSLISFNISMNALDSSIPSS 293
                P+ +   L  L   +N         I DI     LP+LI  ++  N +     S 
Sbjct: 165 DL--TPLANLSKLTTLKADDNK--------ISDISPLASLPNLIEVHLKNNQISDV--SP 212

Query: 294 FGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNL 349
             N + L I+ L+N  +T +   +     V       S   +     S N    + 
Sbjct: 213 LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASP 268

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 50/279 (17%), Positives = 97/279 (34%), Gaps = 50/279 (17%)

Query: 117 SPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQ 176
            P   L +  ++    ++           +   +    A    +   I     L      
Sbjct: 13  FPDPALANAIKIAAGKSNV---TDTVTQADLDGITTLSAFGTGVT-TIEGVQYLN----N 64

Query: 177 LQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDS 236
           L  L L                 + + D+               L+N TK+ +L L  + 
Sbjct: 65  LIGLELKD---------------NQITDLAP-------------LKNLTKITELELSGNP 96

Query: 237 LTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGN 296
           L       I   + ++ LD+++       P+     L +L    + +N + ++I S    
Sbjct: 97  LKNVS--AIAGLQSIKTLDLTSTQITDVTPLAG---LSNLQVLYLDLNQI-TNI-SPLAG 149

Query: 297 MNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEG 356
           +  LQ L + N Q++   P  LA +   L  L   +N +     S   +L NL  + L+ 
Sbjct: 150 LTNLQYLSIGNAQVSDLTP--LA-NLSKLTTLKADDNKIS--DISPLASLPNLIEVHLKN 204

Query: 357 NHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLT 395
           N +    P  L+  S+L  + L N +++ +   +  NL 
Sbjct: 205 NQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLV 241

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 42/214 (19%), Positives = 82/214 (38%), Gaps = 30/214 (14%)

Query: 468 SLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNL 527
           + + +    + +  ++      L  ++ L      +       +  LN L  L+L +N +
Sbjct: 20  NAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQI 75

Query: 528 HGPIPPCFDNTTLHE---SSNNSYSLKPFE--TSLVMDSMMIPAEKQIHENFEFTTKNIA 582
              + P  + T + E   S N   ++       S+              +  + T+  I 
Sbjct: 76  TD-LAPLKNLTKITELELSGNPLKNVSAIAGLQSI--------------KTLDLTSTQIT 120

Query: 583 YIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIE 642
            +     LS L  L L  N+ I +I P +  LT +Q L++ +  ++ L P   +NL  + 
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLT 176

Query: 643 SLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLS 676
           +L    NK++  I   L  L  L    +  N +S
Sbjct: 177 TLKADDNKIS-DIS-PLASLPNLIEVHLKNNQIS 208

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 75.7 bits (186), Expect = 9e-15
 Identities = 46/185 (24%), Positives = 71/185 (38%), Gaps = 36/185 (19%)

Query: 362 EIPQSLSKCSSLEGLYLNNNSLSGKIPRW-LGNLTGLKHIIMPENHLEGPIPVG-FCQLY 419
            +PQSL   S    L L++N+LS     W    LT L  +++  NHL   I    F  + 
Sbjct: 32  NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVP 88

Query: 420 SLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRL 479
           +L+ LD+S N++  +L                           F    +L  L L  N +
Sbjct: 89  NLRYLDLSSNHLH-TLDE-----------------------FLFSDLQALEVLLLYNNHI 124

Query: 480 NGSIPNWV-DGLSQLSHLILGHNNLEGEVPVQ----LCELNQLQLLDLSNNNLHGPIPPC 534
              +     + ++QL  L L  N +    PV+      +L +L LLDLS+N L       
Sbjct: 125 V-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD 182

Query: 535 FDNTT 539
                
Sbjct: 183 LQKLP 187

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 74.1 bits (182), Expect = 3e-14
 Identities = 43/154 (27%), Positives = 64/154 (41%), Gaps = 14/154 (9%)

Query: 254 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPS-SFGNMNFLQILDLSNNQLTG 312
           LD+S+NN            L +L S  +S N L + I S +F  +  L+ LDLS+N L  
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNHLH- 101

Query: 313 EIPEHLAVSCVNLEFLALSNNNLK---GHMFSRNFNLTNLRSLQLEGNHLEGEIP----Q 365
            + E L      LE L L NN++     + F    ++  L+ L L  N +    P    +
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE---DMAQLQKLYLSQNQIS-RFPVELIK 157

Query: 366 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKH 399
             +K   L  L L++N L       L  L     
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 73.7 bits (181), Expect = 3e-14
 Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 9/139 (6%)

Query: 251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPS-SFGNMNFLQILDLSNNQ 309
           L  L +S+N+    I  E    +P+L   ++S N L  ++    F ++  L++L L NN 
Sbjct: 66  LHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNH 123

Query: 310 LTGEIPEHLAVSCVNLEFLALSNNNLK---GHMFSRNFNLTNLRSLQLEGNHLEGEIPQS 366
           +   +  +       L+ L LS N +      +      L  L  L L  N L+      
Sbjct: 124 IV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD 182

Query: 367 LSKCSSL--EGLYLNNNSL 383
           L K  +    GLYL+NN L
Sbjct: 183 LQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 73.3 bits (180), Expect = 5e-14
 Identities = 52/208 (25%), Positives = 75/208 (36%), Gaps = 35/208 (16%)

Query: 301 QILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNL----KGHMFSRNFNLTNLRSLQLEG 356
            IL  S  QL   +P+ L         L LS+NNL         +    LTNL SL L  
Sbjct: 21  NILSCSKQQLP-NVPQSLPS---YTALLDLSHNNLSRLRAEWTPT---RLTNLHSLLLSH 73

Query: 357 NHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG-F 415
           NHL     ++     +L  L L++N L         +L  L+ +++  NH+   +    F
Sbjct: 74  NHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNAF 132

Query: 416 CQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLS 475
             +  LQ L +S N IS                    ++              L+ LDLS
Sbjct: 133 EDMAQLQKLYLSQNQIS---------------RFPVELIKD------GNKLPKLMLLDLS 171

Query: 476 YNRLNGSIPNWVDGLSQLSHLILG-HNN 502
            N+L       +  L       L  HNN
Sbjct: 172 SNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 65.2 bits (159), Expect = 2e-11
 Identities = 41/214 (19%), Positives = 69/214 (32%), Gaps = 63/214 (29%)

Query: 441 PLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWV-DGLSQLSHLILG 499
           P     + LS N L       T    ++L +L LS+N LN  I +     +  L +L L 
Sbjct: 38  PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96

Query: 500 HNNLEGEVPVQ-LCELNQLQLLDLSNNNLHGPIPP-CFDNTTLHESSNNSYSLKPFETSL 557
            N+L   +      +L  L++L L NN++   +    F++                    
Sbjct: 97  SNHLH-TLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFED-------------------- 134

Query: 558 VMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI----GN 613
                                           ++ L  L LS N++    P ++      
Sbjct: 135 --------------------------------MAQLQKLYLSQNQIS-RFPVELIKDGNK 161

Query: 614 LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLS 647
           L ++  L+LS N L  L  +    L       L 
Sbjct: 162 LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 51/220 (23%), Positives = 74/220 (33%), Gaps = 48/220 (21%)

Query: 465 HCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVP-VQLCELNQLQLLDLS 523
            C+S   L  S  +L  ++P  +   S  + L L HNNL           L  L  L LS
Sbjct: 17  LCASN-ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLS 72

Query: 524 NNNLHGPIPPC-FDN----TTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTT 578
           +N+L+  I    F        L  SSN+   L   +  L  D                  
Sbjct: 73  HNHLNF-ISSEAFVPVPNLRYLDLSSNH---LHTLDEFLFSD------------------ 110

Query: 579 KNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSN 637
                      L  L  L L  N  I  +      ++ ++Q L LS N ++        +
Sbjct: 111 -----------LQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158

Query: 638 ---LKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNN 674
              L  +  LDLS NKL       L +L       +  +N
Sbjct: 159 GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.2 bits (138), Expect = 8e-09
 Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 7/92 (7%)

Query: 590 LSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSY 648
           +  L  LDLS N L   +   +  +L  ++ L L +N++  +  + F ++  ++ L LS 
Sbjct: 87  VPNLRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145

Query: 649 NKLNGKIPHQ----LVELKTLAVFSVAYNNLS 676
           N+++ + P +      +L  L +  ++ N L 
Sbjct: 146 NQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 6/91 (6%)

Query: 73  LMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 132
           L +L  L + +N L          + +LR LD+SSN L  ++       L ++E L+L N
Sbjct: 63  LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYN 121

Query: 133 NHFQIPISLEP-LFNH-SRLKIFDAANNEIK 161
           NH      ++   F   ++L+    + N+I 
Sbjct: 122 NHIV---VVDRNAFEDMAQLQKLYLSQNQIS 149

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 12/89 (13%)

Query: 594 SGLDLSC-NKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPST-FSNLKHIESLDLSYNKL 651
           +   LSC  + + ++P  + + T    L+LSHNNL+ L      + L ++ SL LS+N L
Sbjct: 19  ASNILSCSKQQLPNVPQSLPSYT--ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL 76

Query: 652 NGKIP----HQLVELKTLAVFSVAYNNLS 676
           N  I       +  L+ L    ++ N+L 
Sbjct: 77  N-FISSEAFVPVPNLRYL---DLSSNHLH 101

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 14/184 (7%)

Query: 371 SSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG-FCQLYSLQILDISDN 429
           +  + L L +N LS    +    LT L+ + + +N L+  +P G F +L +L+ L ++DN
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDN 95

Query: 430 NISGSLPSC-FHPL-SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWV 487
            +  +LP   F  L ++ ++ L +N L   L    F   + L  L L YN L  S+P  V
Sbjct: 96  KLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGV 152

Query: 488 -DGLSQLSHLILGHNNLEGEVPVQLCE-LNQLQLLDLSNNNLHGPIPPCFDN----TTLH 541
            D L+ L  L L +N L+  VP    + L +L+ L L NN L       FD+      L 
Sbjct: 153 FDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211

Query: 542 ESSN 545
              N
Sbjct: 212 LQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 56/220 (25%), Positives = 92/220 (41%), Gaps = 43/220 (19%)

Query: 288 SSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLK---GHMFSRNF 344
           S+IP+        + LDL +N+L+  +P         L  L L++N L+     +F    
Sbjct: 33  SNIPAD------TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE-- 83

Query: 345 NLTNLRSLQLEGNHLEGEIPQSL-SKCSSLEGLYLNNNSLSGKIPRWL-GNLTGLKHIIM 402
            L NL +L +  N L+  +P  +  +  +L  L L+ N L   +P  +  +LT L ++ +
Sbjct: 84  -LKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSL 140

Query: 403 PENHLEGPIPVG-FCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRG 461
             N L+  +P G F +L SL+ L + +N +   +P                        G
Sbjct: 141 GYNELQS-LPKGVFDKLTSLKELRLYNNQLK-RVP-----------------------EG 175

Query: 462 TFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHN 501
            F   + L TL L  N+L        D L +L  L L  N
Sbjct: 176 AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 71.5 bits (176), Expect = 7e-14
 Identities = 51/184 (27%), Positives = 83/184 (45%), Gaps = 12/184 (6%)

Query: 251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSS-FGNMNFLQILDLSNNQ 309
            + LD+ +N     +P +    L  L    ++ N L  ++P+  F  +  L+ L +++N+
Sbjct: 39  TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNK 96

Query: 310 LTGEIPEHLAVSCVNLEFLALSNNNLK---GHMFSRNFNLTNLRSLQLEGNHLEGEIPQS 366
           L   +P  +    VNL  L L  N LK     +F     LT L  L L  N L+  +P+ 
Sbjct: 97  LQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS---LTKLTYLSLGYNELQ-SLPKG 151

Query: 367 L-SKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILD 425
           +  K +SL+ L L NN L          LT LK + +  N L+      F  L  L++L 
Sbjct: 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211

Query: 426 ISDN 429
           + +N
Sbjct: 212 LQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 68.9 bits (169), Expect = 6e-13
 Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 14/180 (7%)

Query: 280 NISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLK--- 336
           ++  N L S    +F  +  L++L L++N+L   +P  +     NLE L +++N L+   
Sbjct: 43  DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALP 101

Query: 337 GHMFSRNFNLTNLRSLQLEGNHLEGEIPQSL-SKCSSLEGLYLNNNSLSGKIPRWL-GNL 394
             +F     L NL  L+L+ N L+  +P  +    + L  L L  N L   +P+ +   L
Sbjct: 102 IGVFD---QLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKL 156

Query: 395 TGLKHIIMPENHLEGPIPVG-FCQLYSLQILDISDNNISGSLPSCFHPL-SIEQVHLSKN 452
           T LK + +  N L+  +P G F +L  L+ L + +N +       F  L  ++ + L +N
Sbjct: 157 TSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 54/217 (24%), Positives = 82/217 (37%), Gaps = 45/217 (20%)

Query: 441 PLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWV-DGLSQLSHLILG 499
           P   +++ L  N L   L    F   + L  L L+ N+L  ++P  +   L  L  L + 
Sbjct: 36  PADTKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT 93

Query: 500 HNNLEGEVPVQLCE-LNQLQLLDLSNNNLHGPIPP-CFDN----TTLHESSNNSYSLKPF 553
            N L+  +P+ + + L  L  L L  N L   +PP  FD+    T L    N   SL   
Sbjct: 94  DNKLQ-ALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKG 151

Query: 554 ETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI-G 612
               V D                             L+ L  L L  N+L   +P     
Sbjct: 152 ----VFDK----------------------------LTSLKELRLYNNQL-KRVPEGAFD 178

Query: 613 NLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 649
            LT ++TL L +N L  +    F +L+ ++ L L  N
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 18/165 (10%)

Query: 225 TKLRQLYLVNDSLT----GPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFN 280
           TKLR LYL ++ L     G F       + L  L V++N  Q  +P+ + D L +L    
Sbjct: 61  TKLRLLYLNDNKLQTLPAGIF----KELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELR 115

Query: 281 ISMNALDSSIPSS-FGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLK--- 336
           +  N L  S+P   F ++  L  L L  N+L   +P+ +     +L+ L L NN LK   
Sbjct: 116 LDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVP 173

Query: 337 GHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNN 381
              F     LT L++L+L+ N L+     +      L+ L L  N
Sbjct: 174 EGAFD---KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 50/193 (25%), Positives = 78/193 (40%), Gaps = 44/193 (22%)

Query: 467 SSLVTLDLSYNRLNGSIPNWV-DGLSQLSHLILGHNNLEGEVPVQLC-ELNQLQLLDLSN 524
           +    LDL  N+L+ S+P+     L++L  L L  N L+  +P  +  EL  L+ L +++
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTD 94

Query: 525 NNLHGPIPPC-FDN----TTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTK 579
           N L   +P   FD       L    N   SL P     V DS                  
Sbjct: 95  NKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPR----VFDS------------------ 131

Query: 580 NIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNL 638
                     L+ L+ L L  N+L   +P  +   LT ++ L L +N L  +    F  L
Sbjct: 132 ----------LTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180

Query: 639 KHIESLDLSYNKL 651
             +++L L  N+L
Sbjct: 181 TELKTLKLDNNQL 193

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 53/240 (22%), Positives = 79/240 (32%), Gaps = 65/240 (27%)

Query: 98  TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAAN 157
              + LD+ SN+L+ S+ S     LT +  L L++N  Q   +L          IF    
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ---TLPA-------GIFK--- 82

Query: 158 NEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFP 217
                       L      L+ L ++                           N     P
Sbjct: 83  -----------ELK----NLETLWVTD--------------------------NKLQALP 101

Query: 218 NWLLENNTKLRQLYLVNDSLT----GPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDIL 273
             + +    L +L L  + L       F     S   L +L +  N  Q  +P  + D L
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPPRVF----DSLTKLTYLSLGYNELQ-SLPKGVFDKL 156

Query: 274 PSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNN 333
            SL    +  N L      +F  +  L+ L L NNQL   +PE    S   L+ L L  N
Sbjct: 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 7/81 (8%)

Query: 590 LSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSY 648
           L  L  L ++ NKL   +P  +   L  +  L L  N L  L P  F +L  +  L L Y
Sbjct: 84  LKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142

Query: 649 NKLNGKIPH----QLVELKTL 665
           N+L   +P     +L  LK L
Sbjct: 143 NELQ-SLPKGVFDKLTSLKEL 162

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 7/81 (8%)

Query: 590 LSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSY 648
           L+ L  L L+ NKL   +P  I   L  ++TL ++ N L  L    F  L ++  L L  
Sbjct: 60  LTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118

Query: 649 NKLNGKIP----HQLVELKTL 665
           N+L   +P      L +L  L
Sbjct: 119 NQLK-SLPPRVFDSLTKLTYL 138

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 5/74 (6%)

Query: 596 LDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN-- 652
           LDL  NK +  +P +    LT+++ L L+ N L  L    F  LK++E+L ++ NKL   
Sbjct: 42  LDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100

Query: 653 -GKIPHQLVELKTL 665
              +  QLV L  L
Sbjct: 101 PIGVFDQLVNLAEL 114

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 49/238 (20%), Positives = 80/238 (33%), Gaps = 82/238 (34%)

Query: 72  SLMHLQELYIDNNDLRGSLP-WCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELML 130
            L  L+ LY+++N L+ +LP      + +L  L V+ N+L  ++       L ++ EL L
Sbjct: 59  RLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRL 116

Query: 131 SNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGV 190
             N  +   SL P       ++FD              SLT    +L  LSL        
Sbjct: 117 DRNQLK---SLPP-------RVFD--------------SLT----KLTYLSLGY------ 142

Query: 191 TFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRW 250
                               N     P  + +  T L++L L                  
Sbjct: 143 --------------------NELQSLPKGVFDKLTSLKELRL------------------ 164

Query: 251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNN 308
                  NN  +  +P    D L  L +  +  N L      +F ++  L++L L  N
Sbjct: 165 ------YNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 618 QTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN---GKIPHQLVELKTL 665
           + L+L  N L+ L    F  L  +  L L+ NKL      I  +L  L+TL
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL 90

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 44  SMPSLKYLSMSDSTLGTNSSRILDQGLC-SLMHLQELYIDNNDLRGSLPWCLANMTSLRI 102
           S+  L YLS     LG N  + L +G+   L  L+EL + NN L+         +T L+ 
Sbjct: 131 SLTKLTYLS-----LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185

Query: 103 LDVSSNQLTGSISSSPLVHLTSIEELMLSNN 133
           L + +NQL   +       L  ++ L L  N
Sbjct: 186 LKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 50/303 (16%), Positives = 96/303 (31%), Gaps = 71/303 (23%)

Query: 275 SLISFNISMNALDS----SIPSSFGNMNFLQILDLSNNQLTGEIPEHLA---VSCVNLEF 327
           S+   ++ ++A+ +    S+ +     + ++ + LS N +  E    L+    S  +LE 
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 328 LALSNNNLK-------------GHMFSRNFNLTNLRSLQLEGNHLEGE----IPQSLSKC 370
              S+                      +      L +++L  N         +   LSK 
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKC---PKLHTVRLSDNAFGPTAQEPLIDFLSKH 121

Query: 371 SSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNN 430
           + LE LYL+NN L  +    +     L+ + + +     P          L+ +    N 
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIAR--ALQELAVNKKAKNAP---------PLRSIICGRNR 170

Query: 431 I--------SGSLPSCFHPLSIEQVHLSKNMLH----GQLKRGTFFHCSSLVTLDLSYNR 478
           +        + +  S      +  V + +N +       L      +C  L  LDL  N 
Sbjct: 171 LENGSMKEWAKTFQSH---RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227

Query: 479 LN--------GSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCEL------NQLQLLDLSN 524
                      ++ +W      L  L L    L       + +         LQ L L  
Sbjct: 228 FTHLGSSALAIALKSW----PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQY 283

Query: 525 NNL 527
           N +
Sbjct: 284 NEI 286

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 67.0 bits (164), Expect = 7e-12
 Identities = 56/387 (14%), Positives = 110/387 (28%), Gaps = 112/387 (28%)

Query: 300 LQILDLSNNQLTGEIPEHLA---VSCVNLEFLALSNNNLK-------GHMFSRNFNLTNL 349
           ++   L  + +T E  + +    +   +++ + LS N +            +   +L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 350 RSLQLEGNHLEGEIP-------QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIM 402
               +    ++ EIP       Q+L KC  L  + L++N+               + +  
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT---------AQEPL-- 114

Query: 403 PENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGT 462
             + L             L+ L + +N +    P     ++          L        
Sbjct: 115 -IDFLSKHT--------PLEHLYLHNNGLG---PQAGAKIA--------RALQELAVNKK 154

Query: 463 FFHCSSLVTLDLSYNRL-NGSIPNWVDGLSQ---LSHLILGHNNLEGE-VPVQLCELNQL 517
             +   L ++    NRL NGS+  W         L  + +  N +  E +   L E    
Sbjct: 155 AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA- 213

Query: 518 QLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFT 577
                    L            L    N                              FT
Sbjct: 214 -----YCQEL----------KVLDLQDNT-----------------------------FT 229

Query: 578 TKNIAYIYQG-KVLSLLSGLDLSCNKL-------IGHIPPQIGNLTRIQTLNLSHNNLT- 628
               + +    K    L  L L+   L       +     ++ N+  +QTL L +N +  
Sbjct: 230 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNEIEL 288

Query: 629 ----GLIPSTFSNLKHIESLDLSYNKL 651
                L       +  +  L+L+ N+ 
Sbjct: 289 DAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 65.1 bits (159), Expect = 3e-11
 Identities = 65/337 (19%), Positives = 108/337 (32%), Gaps = 67/337 (19%)

Query: 94  LANMTSLRILDVSSNQLTG---SISSSPLVHLTSIEELMLSNNHFQIP----ISLEPLFN 146
           +A   S+    +  + +T        + L+   S++E++LS N         +S E + +
Sbjct: 1   MAR-FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLS-ENIAS 58

Query: 147 HSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVR 206
              L+I + ++        E               L             L     L  VR
Sbjct: 59  KKDLEIAEFSDIFTGRVKDEIPE--------ALRLLLQA----------LLKCPKLHTVR 100

Query: 207 LSHVNMDGEFPNWL---LENNTKLRQLYLVNDSLT-------------GPFRLPIHSHRW 250
           LS           L   L  +T L  LYL N+ L                      +   
Sbjct: 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP 160

Query: 251 LRFLDVSNNNFQGHIPVEIGDIL---PSLISFNISMNAL-----DSSIPSSFGNMNFLQI 302
           LR +    N  +     E          L +  +  N +     +  +         L++
Sbjct: 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKV 220

Query: 303 LDLSNNQLTGEIPEHLA---VSCVNLEFLALSNNNLK-------GHMFSRNFNLTNLRSL 352
           LDL +N  T      LA    S  NL  L L++  L           FS+  N+  L++L
Sbjct: 221 LDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTL 279

Query: 353 QLEGNHLEGE----IPQSL-SKCSSLEGLYLNNNSLS 384
           +L+ N +E +    +   +  K   L  L LN N  S
Sbjct: 280 RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.3 bits (131), Expect = 7e-08
 Identities = 33/168 (19%), Positives = 60/168 (35%), Gaps = 17/168 (10%)

Query: 32  ALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLR---- 87
           AL    +    ++ P L+ +    + L   S +   +   S   L  + +  N +R    
Sbjct: 145 ALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI 204

Query: 88  -GSLPWCLANMTSLRILDVSSNQLT--GSIS-SSPLVHLTSIEELMLSNNHFQ------I 137
              L   LA    L++LD+  N  T  GS + +  L    ++ EL L++          +
Sbjct: 205 EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264

Query: 138 PISLEPLFNHSRLKIFDAANNEIKAEITE--SHSLTAPNFQLQALSLS 183
             +   L N   L+      NEI+ +        +      L  L L+
Sbjct: 265 VDAFSKLENIG-LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 311

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 51.6 bits (124), Expect = 6e-07
 Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 22/141 (15%)

Query: 12  GQGFPHFKSLDHLDMVF-------ARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSR 64
            + F   + L  + MV            L              LK L + D+T     S 
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL-----AYCQELKVLDLQDNTFTHLGSS 234

Query: 65  ILDQGLCSLMHLQELYIDNNDLRGSLPWCLANM------TSLRILDVSSNQLTG----SI 114
            L   L S  +L+EL +++  L       + +         L+ L +  N++      ++
Sbjct: 235 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294

Query: 115 SSSPLVHLTSIEELMLSNNHF 135
            +     +  +  L L+ N F
Sbjct: 295 KTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 46/353 (13%), Positives = 90/353 (25%), Gaps = 115/353 (32%)

Query: 345 NLTNLRSLQLEGNHLEGE----IPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHI 400
             + +    L+ + +  E    +   L +  S++ + L+ N++  +           + +
Sbjct: 3   RFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTE---------AARWL 52

Query: 401 --IMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQL 458
              +                  L+I + SD             L      L + +L    
Sbjct: 53  SENIASKK-------------DLEIAEFSDIFTGRVKDEIPEALR----LLLQALLK--- 92

Query: 459 KRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQ 518
                  C  L T+ LS N               L   +  H  L              +
Sbjct: 93  -------CPKLHTVRLSDNAFG------PTAQEPLIDFLSKHTPL--------------E 125

Query: 519 LLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTT 578
            L L NN L GP                  +      +L                     
Sbjct: 126 HLYLHNNGL-GPQ-----------------AGAKIARAL--------------------- 146

Query: 579 KNIAYIYQGKVLSLLSGLDLSCNKL----IGHIPPQIGNLTRIQTLNLSHNNLT-----G 629
           + +A   + K    L  +    N+L    +        +   + T+ +  N +       
Sbjct: 147 QELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH 206

Query: 630 LIPSTFSNLKHIESLDLSYNKLNGK----IPHQLVELKTLAVFSVAYNNLSGE 678
           L+    +  + ++ LDL  N         +   L     L    +    LS  
Sbjct: 207 LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 25/142 (17%), Positives = 43/142 (30%), Gaps = 22/142 (15%)

Query: 43  ESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDL-------------RGS 89
              P L  + +SD+  G  +   L   L     L+ LY+ NN L               +
Sbjct: 91  LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA 150

Query: 90  LPWCLANMTSLRILDVSSNQLT--GSIS-SSPLVHLTSIEELMLSNNHF-----QIPISL 141
           +     N   LR +    N+L        +        +  + +  N       +  +  
Sbjct: 151 VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL- 209

Query: 142 EPLFNHSRLKIFDAANNEIKAE 163
           E L     LK+ D  +N     
Sbjct: 210 EGLAYCQELKVLDLQDNTFTHL 231

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 69.8 bits (170), Expect = 2e-12
 Identities = 38/255 (14%), Positives = 79/255 (30%), Gaps = 16/255 (6%)

Query: 424 LDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSI 483
               ++ +           S  Q          +           L   +LS  +    +
Sbjct: 306 AASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VL 364

Query: 484 PNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES 543
            + ++   +L  L   +      + + +  L+ L     +              +TL   
Sbjct: 365 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF----------STLKAV 414

Query: 544 SNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKN-IAYIYQGKVLSLLSGLDLSCNK 602
                +      S  +    +   +             +  +   + L L++ LDLS N+
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR 474

Query: 603 LIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG-KIPHQLVE 661
           L   +PP +  L  ++ L  S N L  +     +NL  ++ L L  N+L        LV 
Sbjct: 475 LR-ALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVS 531

Query: 662 LKTLAVFSVAYNNLS 676
              L + ++  N+L 
Sbjct: 532 CPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 66.7 bits (162), Expect = 1e-11
 Identities = 42/261 (16%), Positives = 78/261 (29%), Gaps = 12/261 (4%)

Query: 222 ENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNN---FQGHIPVEIGDILPSLIS 278
              + +    L   SL            W              +             L  
Sbjct: 294 NRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFR 353

Query: 279 FNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGH 338
             +S+      + S   +   LQ L+  N      I   +      L+ L      L+  
Sbjct: 354 CELSVEKSTV-LQSELESCKELQELEPENKWCLLTIILLMR----ALDPLLYEKETLQYF 408

Query: 339 MFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLK 398
              +  +      L    +    E      + + +  L+L +  L+  +   L  L  + 
Sbjct: 409 STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVT 466

Query: 399 HIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQL 458
           H+ +  N L   +P     L  L++L  SDN +  ++    +   ++++ L  N L    
Sbjct: 467 HLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVDGVANLPRLQELLLCNNRLQQSA 524

Query: 459 KRGTFFHCSSLVTLDLSYNRL 479
                  C  LV L+L  N L
Sbjct: 525 AIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 66.3 bits (161), Expect = 2e-11
 Identities = 50/313 (15%), Positives = 91/313 (29%), Gaps = 13/313 (4%)

Query: 74  MHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNN 133
           +    +  +   L       L   + +  L +  ++   S+             + L + 
Sbjct: 245 LCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDL 304

Query: 134 HFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQAL-SLSSGYGDGVTF 192
                    P      +     +  E              +   + L             
Sbjct: 305 PAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVL 364

Query: 193 PKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLR 252
              L    +L+++   +          ++     L  L    ++L     L         
Sbjct: 365 QSELESCKELQELEPENKWCL----LTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 420

Query: 253 FLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTG 312
           +LD   + F     V   +     +  +++   L          +  +  LDLS+N+L  
Sbjct: 421 YLDDLRSKFLLENSVLKMEYADVRV-LHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLR- 476

Query: 313 EIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEG-EIPQSLSKCS 371
            +P  LA +   LE L  S+N L+        NL  L+ L L  N L+     Q L  C 
Sbjct: 477 ALPPALA-ALRCLEVLQASDNALE--NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCP 533

Query: 372 SLEGLYLNNNSLS 384
            L  L L  NSL 
Sbjct: 534 RLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 65.9 bits (160), Expect = 2e-11
 Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 7/149 (4%)

Query: 13  QGFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILD-QGLC 71
           +   +F +L  +D    R A               LK        L      +     L 
Sbjct: 403 ETLQYFSTLKAVD--PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLE 460

Query: 72  SLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 131
            L+ +  L + +N LR +LP  LA +  L +L  S N L    +   + +L  ++EL+L 
Sbjct: 461 QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE---NVDGVANLPRLQELLLC 516

Query: 132 NNHFQIPISLEPLFNHSRLKIFDAANNEI 160
           NN  Q   +++PL +  RL + +   N +
Sbjct: 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.4 bits (156), Expect = 7e-11
 Identities = 43/311 (13%), Positives = 97/311 (31%), Gaps = 35/311 (11%)

Query: 122 LTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALS 181
           + ++  ++          + +     S + + D     +  ++ +               
Sbjct: 271 MGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKE 330

Query: 182 LSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPF 241
                     + +       L    LS V       +  LE+  +L++L   N       
Sbjct: 331 CVLLKDRPECWCRDSATDEQLFRCELS-VEKSTVLQS-ELESCKELQELEPENKWCLLTI 388

Query: 242 RLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQ 301
            L + +   L +   +   F     ++  D + +    ++    L  +          ++
Sbjct: 389 ILLMRALDPLLYEKETLQYFST---LKAVDPMRAAYLDDLRSKFLLENSVLKM-EYADVR 444

Query: 302 ILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEG 361
           +L L++  LT  +  HL    + +  L LS+N L+  +      L  L  LQ   N LE 
Sbjct: 445 VLHLAHKDLT--VLCHLE-QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE- 499

Query: 362 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSL 421
            +   ++    L+ L L NN L             ++ +                    L
Sbjct: 500 NVD-GVANLPRLQELLLCNNRLQ--------QSAAIQPL---------------VSCPRL 535

Query: 422 QILDISDNNIS 432
            +L++  N++ 
Sbjct: 536 VLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.1 bits (124), Expect = 6e-07
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 11/101 (10%)

Query: 43  ESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRI 102
           E +  + +L +S      N  R L   L +L  L+ L   +N L  ++   +AN+  L+ 
Sbjct: 460 EQLLLVTHLDLSH-----NRLRALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQE 512

Query: 103 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEP 143
           L + +N+L  S +  PLV    +  L L  N     +  E 
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN----SLCQEE 549

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 46/305 (15%), Positives = 91/305 (29%), Gaps = 56/305 (18%)

Query: 376 LYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSL 435
                  +                  + +  +   +     +L S+  +  ++++I  S+
Sbjct: 7   TITVPTPIKQIFS--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV 61

Query: 436 PSCFHPLSIEQVHLSKNMLHGQLKRGTFF-HCSSLVTLDLSYNRLNGSIPNWVDGLSQLS 494
               +  ++ ++ L+ N    +L       +  +L  L L  N++   + + +  L +L 
Sbjct: 62  QGIQYLPNVTKLFLNGN----KLTDIKPLANLKNLGWLFLDENKVK-DLSS-LKDLKKLK 115

Query: 495 HLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE---SSNNSYSLK 551
            L L HN +       L  L QL+ L L NN +   I      T L       N    + 
Sbjct: 116 SLSLEHNGISDING--LVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDIV 172

Query: 552 PFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI 611
           P                                     L+ L  L LS N  I  +   +
Sbjct: 173 PLAG----------------------------------LTKLQNLYLSKNH-ISDLRA-L 196

Query: 612 GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVA 671
             L  +  L L          +  SNL    ++  +   L    P  + +       +V 
Sbjct: 197 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVK 254

Query: 672 YNNLS 676
           ++   
Sbjct: 255 WHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 66.6 bits (163), Expect = 4e-12
 Identities = 48/313 (15%), Positives = 93/313 (29%), Gaps = 76/313 (24%)

Query: 345 NLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPE 404
                    L+   +   +    ++ +S++ +  NN+ +   +   +  L  +  + +  
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNG 77

Query: 405 NHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFF 464
           N L   I      L +L  L + +N +            +                 +  
Sbjct: 78  NKLTD-IK-PLANLKNLGWLFLDENKVK----------DLS----------------SLK 109

Query: 465 HCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSN 524
               L +L L +N ++  I   +  L QL  L LG+N +       L  L +L  L L +
Sbjct: 110 DLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLED 165

Query: 525 NNLHGPIPPCFDNTTLHE---SSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNI 581
           N +   I P    T L     S N+   L+                              
Sbjct: 166 NQISD-IVPLAGLTKLQNLYLSKNHISDLRALAG-------------------------- 198

Query: 582 AYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHI 641
                   L  L  L+L   + +        NL    T+  +  +L    P   S+    
Sbjct: 199 --------LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDY 248

Query: 642 ESLDLSYNKLNGK 654
           E  ++ ++     
Sbjct: 249 EKPNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 50/315 (15%), Positives = 100/315 (31%), Gaps = 65/315 (20%)

Query: 78  ELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQI 137
           E       ++                ++    +T    +     L SI++++ +N+  + 
Sbjct: 6   ETITVPTPIKQIFS--DDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIK- 59

Query: 138 PISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLY 197
             S++ +     +       N++  +I    +L      L  L L               
Sbjct: 60  --SVQGIQYLPNVTKLFLNGNKLT-DIKPLANLK----NLGWLFLDE------------N 100

Query: 198 HQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRL-PIHSHRWLRFLDV 256
              DL                  L++  KL+ L L ++ ++    +  +     L  L +
Sbjct: 101 KVKDLSS----------------LKDLKKLKSLSLEHNGIS---DINGLVHLPQLESLYL 141

Query: 257 SNNNFQGHIPVEIGDI-----LPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLT 311
            NN         I DI     L  L + ++  N + S I      +  LQ L LS N ++
Sbjct: 142 GNNK--------ITDITVLSRLTKLDTLSLEDNQI-SDI-VPLAGLTKLQNLYLSKNHIS 191

Query: 312 GEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCS 371
            ++   LA    NL+ L L +        +   NL    +++     L    P+ +S   
Sbjct: 192 -DLRA-LA-GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDG 246

Query: 372 SLEGLYLNNNSLSGK 386
             E   +  +     
Sbjct: 247 DYEKPNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.1 bits (154), Expect = 6e-11
 Identities = 42/217 (19%), Positives = 87/217 (40%), Gaps = 26/217 (11%)

Query: 221 LENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDI-----LPS 275
           ++    + +L+L  + LT     P+ + + L +L +  N         + D+     L  
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENK--------VKDLSSLKDLKK 113

Query: 276 LISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNL 335
           L S ++  N + S I +   ++  L+ L L NN++T      L+     L+ L+L +N +
Sbjct: 114 LKSLSLEHNGI-SDI-NGLVHLPQLESLYLGNNKIT--DITVLS-RLTKLDTLSLEDNQI 168

Query: 336 KGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLT 395
                     LT L++L L  NH+  ++ ++L+   +L+ L L +     K      NL 
Sbjct: 169 S--DIVPLAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLV 224

Query: 396 GLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNIS 432
               +   +  L  P  +        +  ++  +   
Sbjct: 225 VPNTVKNTDGSLVTPEII--SDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 48/315 (15%), Positives = 107/315 (33%), Gaps = 64/315 (20%)

Query: 43  ESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRI 102
           ++       ++   ++              L  + ++  +N+D++ S+   +  + ++  
Sbjct: 21  DAFAETIKDNLKKKSVTDAV------TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTK 72

Query: 103 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKA 162
           L ++ N+LT      PL +L ++  L L  N  +    L  L +  +LK     +N I  
Sbjct: 73  LFLNGNKLT---DIKPLANLKNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHNGIS- 125

Query: 163 EITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLE 222
           +I     L     QL++L L +     +T                             L 
Sbjct: 126 DINGLVHLP----QLESLYLGNNKITDITV----------------------------LS 153

Query: 223 NNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDI-----LPSLI 277
             TKL  L L ++ ++    +P+     L+ L +S N+        I D+     L +L 
Sbjct: 154 RLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNH--------ISDLRALAGLKNLD 203

Query: 278 SFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTG--EIPEHLAVSCVNLEFLALSNNNL 335
              +      +   +   N+     +  ++  L     I +       N+++      N 
Sbjct: 204 VLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNE 263

Query: 336 KGHMFSRNFNLTNLR 350
              +F +   +   +
Sbjct: 264 VSFIFYQPVTIGKAK 278

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 65.4 bits (160), Expect = 3e-12
 Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 7/120 (5%)

Query: 284 NALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLK---GHMF 340
           N +    P +F     L+ +DLSNNQ++ E+         +L  L L  N +      +F
Sbjct: 42  NTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLF 100

Query: 341 SRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHI 400
                L +L+ L L  N +      +     +L  L L +N L          L  ++ +
Sbjct: 101 EG---LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 62.4 bits (152), Expect = 5e-11
 Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 10/144 (6%)

Query: 362 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG-FCQLYS 420
           EIP +L    ++  + L  N++    P        L+ I +  N +   +    F  L S
Sbjct: 25  EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRS 81

Query: 421 LQILDISDNNISGSLPS-CFHPL-SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNR 478
           L  L +  N I+  LP   F  L S++ + L+ N ++  L+   F    +L  L L  N+
Sbjct: 82  LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNK 139

Query: 479 LNGSIPNWV-DGLSQLSHLILGHN 501
           L  +I       L  +  + L  N
Sbjct: 140 LQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 61.6 bits (150), Expect = 8e-11
 Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 10/133 (7%)

Query: 420 SLQILDISDNNISGSLPSCFHPLS-IEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNR 478
           ++  + +  N I    P  F P   + ++ LS N +  +L    F    SL +L L  N+
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNK 91

Query: 479 LNGSIPNWV-DGLSQLSHLILGHNNLEGEVPVQL-CELNQLQLLDLSNNNLHGPIPPCFD 536
           +   +P  + +GL  L  L+L  N +   + V    +L+ L LL L +N L       F 
Sbjct: 92  IT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149

Query: 537 N----TTLHESSN 545
                 T+H + N
Sbjct: 150 PLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 9/133 (6%)

Query: 301 QILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKG---HMFSRNFNLTNLRSLQLEGN 357
             + L  N +   IP         L  + LSNN +       F     L +L SL L GN
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG---LRSLNSLVLYGN 90

Query: 358 HLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWL-GNLTGLKHIIMPENHLEGPIPVGFC 416
            +            SL+ L LN N ++  +      +L  L  + + +N L+      F 
Sbjct: 91  KITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149

Query: 417 QLYSLQILDISDN 429
            L ++Q + ++ N
Sbjct: 150 PLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 9/116 (7%)

Query: 441 PLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWV-DGLSQLSHLILG 499
           P +I ++ L +N +   +  G F     L  +DLS N+++  +      GL  L+ L+L 
Sbjct: 31  PETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLY 88

Query: 500 HNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPP-CFDN----TTLHESSNNSYSL 550
            N +          L  LQLL L+ N ++  +    F +      L    N   ++
Sbjct: 89  GNKITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTI 143

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 4/113 (3%)

Query: 246 HSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSS-FGNMNFLQILD 304
             ++ LR +D+SNN     +  +    L SL S  +  N + + +P S F  +  LQ+L 
Sbjct: 53  SPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLL 110

Query: 305 LSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGN 357
           L+ N++   +         NL  L+L +N L+         L  ++++ L  N
Sbjct: 111 LNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 8/131 (6%)

Query: 254 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGE 313
           + +  N  +  IP         L   ++S N +    P +F  +  L  L L  N++T E
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-E 94

Query: 314 IPEHLAVSCVNLEFLALSNNNLKG---HMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKC 370
           +P+ L     +L+ L L+ N +       F    +L NL  L L  N L+     + S  
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKINCLRVDAFQ---DLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 371 SSLEGLYLNNN 381
            +++ ++L  N
Sbjct: 152 RAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 33/187 (17%), Positives = 58/187 (31%), Gaps = 60/187 (32%)

Query: 467 SSLVTLDLSYNRLNGSIPNWV-DGLSQLSHLILGHNNLEGEVPVQLCE-LNQLQLLDLSN 524
            ++  + L  N +   IP        +L  + L +N +  E+     + L  L  L L  
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYG 89

Query: 525 NNLHGPIPP-CFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAY 583
           N +   +P   F+                                               
Sbjct: 90  NKITE-LPKSLFEG---------------------------------------------- 102

Query: 584 IYQGKVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIE 642
                 L  L  L L+ NK+   +      +L  +  L+L  N L  +   TFS L+ I+
Sbjct: 103 ------LFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155

Query: 643 SLDLSYN 649
           ++ L+ N
Sbjct: 156 TMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 590 LSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSY 648
           L  L+ L L  NK+   +P  +   L  +Q L L+ N +  L    F +L ++  L L  
Sbjct: 79  LRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137

Query: 649 NKLNGKIPH----QLVELKTLAVFS 669
           NKL   I       L  ++T+ +  
Sbjct: 138 NKLQ-TIAKGTFSPLRAIQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 596 LDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL--- 651
           + L  N  I  IPP       +++ ++LS+N ++ L P  F  L+ + SL L  NK+   
Sbjct: 37  IRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 652 NGKIPHQLVELKTL 665
              +   L  L+ L
Sbjct: 96  PKSLFEGLFSLQLL 109

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 8/66 (12%)

Query: 615 TRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP----HQLVELKTLAVFSV 670
             I  + L  N +  + P  FS  K +  +DLS N+++ ++       L  L +L    +
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSL---VL 87

Query: 671 AYNNLS 676
             N ++
Sbjct: 88  YGNKIT 93

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 5/90 (5%)

Query: 46  PSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDV 105
            SL  L +  + +      + +     L  LQ L ++ N +         ++ +L +L +
Sbjct: 80  RSLNSLVLYGNKITELPKSLFE----GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSL 135

Query: 106 SSNQLTGSISSSPLVHLTSIEELMLSNNHF 135
             N+L  +I+      L +I+ + L+ N F
Sbjct: 136 YDNKLQ-TIAKGTFSPLRAIQTMHLAQNPF 164

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 7/131 (5%)

Query: 254 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGE 313
           L ++NN F       I   LP L   N S N +      +F   + +  + L++N+L   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 314 IPEHLAVSCVNLEFLALSNNNLK---GHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKC 370
           +   +     +L+ L L +N +       F     L+++R L L  N +    P +    
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFI---GLSSVRLLSLYDNQITTVAPGAFDTL 152

Query: 371 SSLEGLYLNNN 381
            SL  L L  N
Sbjct: 153 HSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 11/134 (8%)

Query: 420 SLQILDISDNNISGSLPS-CFHPLS-IEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYN 477
               L +++N  +    +  F  L  + +++ S N +   ++ G F   S +  + L+ N
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSN 91

Query: 478 RLNGSIPNWV-DGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPP-CF 535
           RL  ++ + +  GL  L  L+L  N +          L+ ++LL L +N +   + P  F
Sbjct: 92  RLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAF 149

Query: 536 DN----TTLHESSN 545
           D     +TL+  +N
Sbjct: 150 DTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.5 bits (142), Expect = 8e-10
 Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 8/133 (6%)

Query: 301 QILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKG---HMFSRNFNLTNLRSLQLEGN 357
             L L+NN+ T      +      L  +  SNN +       F      + +  + L  N
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG---ASGVNEILLTSN 91

Query: 358 HLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG-FC 416
            LE    +      SL+ L L +N ++         L+ ++ + + +N +   +  G F 
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFD 150

Query: 417 QLYSLQILDISDN 429
            L+SL  L++  N
Sbjct: 151 TLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 8/152 (5%)

Query: 304 DLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNF-NLTNLRSLQLEGNHLEGE 362
           D SN +L  +IPEH+         L L+NN       +  F  L  LR +    N +   
Sbjct: 17  DCSNQKLN-KIPEHIPQ---YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI 72

Query: 363 IPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG-FCQLYSL 421
              +    S +  + L +N L     +    L  LK +++  N +   +    F  L S+
Sbjct: 73  EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSV 131

Query: 422 QILDISDNNISGSLPSCFHPL-SIEQVHLSKN 452
           ++L + DN I+   P  F  L S+  ++L  N
Sbjct: 132 RLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 10/113 (8%)

Query: 441 PLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWV-DGLSQLSHLILG 499
           P    ++ L+ N        G F     L  ++ S N++   I     +G S ++ ++L 
Sbjct: 31  PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLT 89

Query: 500 HNNLEGEVPVQLCE-LNQLQLLDLSNNNLHGPIPP-CFDN----TTLHESSNN 546
            N LE  V  ++ + L  L+ L L +N +   +    F        L    N 
Sbjct: 90  SNRLE-NVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQ 140

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 27/182 (14%), Positives = 50/182 (27%), Gaps = 57/182 (31%)

Query: 471 TLDLSYNRLNGSIPNWV-DGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHG 529
            L L+ N         +   L QL  +   +N +           + +  + L++N L  
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 530 PIPP-CFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGK 588
            +    F                                                     
Sbjct: 96  -VQHKMFKG--------------------------------------------------- 103

Query: 589 VLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLS 647
            L  L  L L  N++   +       L+ ++ L+L  N +T + P  F  L  + +L+L 
Sbjct: 104 -LESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161

Query: 648 YN 649
            N
Sbjct: 162 AN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 590 LSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSY 648
            S ++ + L+ N+L   +  ++   L  ++TL L  N +T +   +F  L  +  L L  
Sbjct: 80  ASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD 138

Query: 649 NKLNGKIPH----QLVELKTLAVFS 669
           N++   +       L  L TL + +
Sbjct: 139 NQIT-TVAPGAFDTLHSLSTLNLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 11/87 (12%)

Query: 596 LDLSCNKLIGHIPPQIG--NLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG 653
           L L+ N+    +        L +++ +N S+N +T +    F     +  + L+ N+L  
Sbjct: 37  LRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 654 KIP----HQLVELKTLAVFSVAYNNLS 676
            +       L  LKTL    +  N ++
Sbjct: 96  -VQHKMFKGLESLKTL---MLRSNRIT 118

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 72  SLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 131
            L  L+++   NN +           + +  + ++SN+L  ++       L S++ LML 
Sbjct: 55  KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLR 113

Query: 132 NNHFQIPISLEP-LFNH-SRLKIFDAANNEIK 161
           +N       +    F   S +++    +N+I 
Sbjct: 114 SNRIT---CVGNDSFIGLSSVRLLSLYDNQIT 142

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 55/276 (19%), Positives = 98/276 (35%), Gaps = 49/276 (17%)

Query: 300 LQILDLSNNQLTGE----IPEHLAVSCVNLEFLALSNNNLK---GHMFSR--NFNLTNLR 350
           +  LDLS N L       + +  A +  ++  L LS N+L         +       N+ 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 351 SLQLEGNHLEGEIPQSLSK-----CSSLEGLYLNNNSLSGKIPRWLGNL-----TGLKHI 400
           SL L GN L  +    L K       ++  L L  N  S K               +  +
Sbjct: 84  SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143

Query: 401 IMPENHLEGPIPVGFCQL-----YSLQILDISDNNI--------SGSLPSCFHPLSIEQV 447
            +  N L         Q+      ++  L++  NN+        +  L S   P S+  +
Sbjct: 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASI--PASVTSL 201

Query: 448 HLSKNMLHGQ----LKRGTFFHCSSLVTLDLSYNRLNGS----IPNWVDGLSQLSHLILG 499
            LS N+L  +    L        + +V+L+L  N L+G     +    D L  L  + L 
Sbjct: 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261

Query: 500 HNNLEGEVPVQ-------LCELNQLQLLDLSNNNLH 528
           ++ ++     Q          + ++ L+D +   +H
Sbjct: 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 50/358 (13%), Positives = 102/358 (28%), Gaps = 63/358 (17%)

Query: 94  LANMTSLRILDVSSNQLTGS----ISSSPLVHLTSIEELMLSNNHFQ----IPISLEPLF 145
            +    +  LD+S N L       +  +      S+  L LS N         +      
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 146 NHSRLKIFDAANNEIKAEITE--SHSLTAPNFQLQALSLSS---GYGDGVTFPKFLYHQH 200
             + +   + + N +  + ++    +L A  F +  L L            F +   +  
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 201 -DLEDVRLSHVNMDGE----FPNWLLENNTKLRQLYLVNDSLTGPFRLPI-----HSHRW 250
             +  + L   ++  +        L      +  L L  ++L       +          
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197

Query: 251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQL 310
           +  LD+S N         +G    + ++         S         N +  L+L  N L
Sbjct: 198 VTSLDLSANL--------LGLKSYAELA-----YIFSS-------IPNHVVSLNLCLNCL 237

Query: 311 TGEIPEHLAV---SCVNLEFLALSNNNLKG-------HMFSRNFNLTNLRSLQLEGNHLE 360
            G   E+L +   S  +L+ + L  + +K         + +   N+  +  +   G  + 
Sbjct: 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

Query: 361 GEIPQSLSK-----CSSLEGLYLNNNSLS-----GKIPRWLGNLTGLKHIIMPENHLE 408
                 +S          +   L N  L            L     L+  I     L 
Sbjct: 298 PSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 58/350 (16%), Positives = 106/350 (30%), Gaps = 83/350 (23%)

Query: 220 LLENNTKLRQLYLVNDSLTGP-----FRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILP 274
                  +  L L  ++L         +   ++   +  L++S N+       E+  IL 
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 275 S----LISFNISMNALD----SSIPSSFGNMNF-LQILDLSNNQLTGEIPEHLAVSCVNL 325
           +    + S N+S N L       +  +   + F + +LDL  N  + +            
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK------ 130

Query: 326 EFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKC-----SSLEGLYLNN 380
              A SN               ++ SL L GN L  +    L +      +++  L L  
Sbjct: 131 --QAFSNLP------------ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176

Query: 381 NSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGS------ 434
           N+L+ K    L     L  I                   S+  LD+S N +         
Sbjct: 177 NNLASKNCAELA--KFLASI----PA-------------SVTSLDLSANLLGLKSYAELA 217

Query: 435 --LPSCFHPLSIEQVHLSKNMLHG---QLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDG 489
               S   P  +  ++L  N LHG   +  +        L T+ L Y+ +          
Sbjct: 218 YIFSSI--PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKA 275

Query: 490 LSQ-------LSHLILGHNNLEGEVPVQLCEL-----NQLQLLDLSNNNL 527
           L         +  +      +     + +  L      +  +  L N  L
Sbjct: 276 LGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCL 325

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 44/351 (12%), Positives = 96/351 (27%), Gaps = 91/351 (25%)

Query: 36  SFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSL-MHLQELYIDNNDLRGSLPWCL 94
             +QI+     ++  L++S + L   SS  L + L ++   +  L +  ND         
Sbjct: 70  ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEF 129

Query: 95  ANM-----TSLRILDVSSNQLTG----SISSSPLVHLTSIEELMLSNNHFQIPISLEPLF 145
                    S+  L++  N L       +         ++  L L  N+           
Sbjct: 130 KQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA--------- 180

Query: 146 NHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLED- 204
                        E+      +  L +    + +L LS+               + L   
Sbjct: 181 --------SKNCAEL------AKFLASIPASVTSLDLSA---------------NLLGLK 211

Query: 205 --VRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGP----FRLPIHSHRWLRFLDVSN 258
               L+++                +  L L  + L GP     +L   S + L+ + +  
Sbjct: 212 SYAELAYI---------FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY 262

Query: 259 NNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGE----I 314
           +  +      +       +              ++F N+  + ++D +  ++       I
Sbjct: 263 DIVK-----NMSKEQCKALG-------------AAFPNIQKIILVDKNGKEIHPSHSIPI 304

Query: 315 PEHLAVSCVNLEFLALSNNNLK-----GHMFSRNFNLTNLRSLQLEGNHLE 360
              +       +  +L N  L                  LR        L 
Sbjct: 305 SNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 55/350 (15%), Positives = 108/350 (30%), Gaps = 106/350 (30%)

Query: 367 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDI 426
            S    +  L L+ N+L       L       +                    S+  L++
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQ--AFANTPA-----------------SVTSLNL 58

Query: 427 SDNNISGS--------LPSCFHPLSIEQVHLSKNMLHGQ----LKRGTFFHCSSLVTLDL 474
           S N++           L +   P ++  ++LS N L  +    L +       ++  LDL
Sbjct: 59  SGNSLGFKNSDELVQILAAI--PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDL 116

Query: 475 SYNRL-NGSIPNWVDGL----SQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHG 529
            +N   + S   +        + ++ L L  N+L  +   +L ++       L+    + 
Sbjct: 117 GWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI-------LAAIPAN- 168

Query: 530 PIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKV 589
                    +L+   NN                               +KN A +   K 
Sbjct: 169 -------VNSLNLRGNN-----------------------------LASKNCAEL--AKF 190

Query: 590 LSL----LSGLDLSCNKLIGHIPPQI------GNLTRIQTLNLSHNNLTG----LIPSTF 635
           L+     ++ LDLS N  +G                 + +LNL  N L G     +    
Sbjct: 191 LASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK 249

Query: 636 SNLKHIESLDLSYNKLNGKIPHQLVEL-------KTLAVFSVAYNNLSGE 678
            +LKH++++ L Y+ +      Q   L       + + +       +   
Sbjct: 250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 36/230 (15%), Positives = 78/230 (33%), Gaps = 22/230 (9%)

Query: 300 LQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHL 359
               +L    +T  + +        ++     N+N++    +     TNL+ L L  N +
Sbjct: 21  AVKQNLGKQSVTDLVSQK---ELSGVQNFNGDNSNIQ--SLAGMQFFTNLKELHLSHNQI 75

Query: 360 EGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLY 419
             ++   L   + LE L +N N L   +   + +   L  + +  N L          L 
Sbjct: 76  S-DLS-PLKDLTKLEELSVNRNRLK-NLNG-IPSAC-LSRLFLDNNELRDTDS--LIHLK 128

Query: 420 SLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRL 479
           +L+IL I +N +  S+        +E + L  N +      G       +  +DL+  + 
Sbjct: 129 NLEILSIRNNKLK-SIVMLGFLSKLEVLDLHGNEIT---NTGGLTRLKKVNWIDLTGQKC 184

Query: 480 NGSIPNWVDGLSQLSHLILGHNNLEGEV--PVQLCELNQLQLLDLSNNNL 527
             + P        +++ +    + +G    P  +          +     
Sbjct: 185 V-NEPVKYQPELYITNTV---KDPDGRWISPYYISNGGSYVDGCVLWELP 230

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 32/192 (16%), Positives = 73/192 (38%), Gaps = 22/192 (11%)

Query: 69  GLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 128
               L +  +  +    +   +      ++ ++  +  ++ +    S + +   T+++EL
Sbjct: 14  PDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ---SLAGMQFFTNLKEL 68

Query: 129 MLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGD 188
            LS+N  QI   L PL + ++L+      N +K  +    S       L  L L     +
Sbjct: 69  HLSHN--QI-SDLSPLKDLTKLEELSVNRNRLK-NLNGIPSAC-----LSRLFLD---NN 116

Query: 189 GVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSH 248
            +     L H  +LE + + + N         L   +KL  L L  + +T      +   
Sbjct: 117 ELRDTDSLIHLKNLEILSIRN-NKLKSIVM--LGFLSKLEVLDLHGNEITNT--GGLTRL 171

Query: 249 RWLRFLDVSNNN 260
           + + ++D++   
Sbjct: 172 KKVNWIDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 15/119 (12%)

Query: 43  ESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRI 102
           + +  L+ LS++ +       R+ +        L  L++DNN+LR +    L ++ +L I
Sbjct: 82  KDLTKLEELSVNRN-------RLKNLNGIPSACLSRLFLDNNELRDTDS--LIHLKNLEI 132

Query: 103 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIK 161
           L + +N+L    S   L  L+ +E L L  N      +   L    ++   D    +  
Sbjct: 133 LSIRNNKLK---SIVMLGFLSKLEVLDLHGNEIT---NTGGLTRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 32/190 (16%), Positives = 61/190 (32%), Gaps = 23/190 (12%)

Query: 465 HCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSN 524
             S +   +   + +  S+   +   + L  L L HN +    P  L +L +L+ L ++ 
Sbjct: 39  ELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94

Query: 525 NNLHGPIPPCFDN-TTLHESSNNSYSLKPFE--TSLVMDSMMIPAEKQIHENFEFTTKNI 581
           N L           + L   +N            +L + S        I  N       +
Sbjct: 95  NRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILS--------IRNN------KL 140

Query: 582 AYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHI 641
             I     LS L  LDL  N+ I +    +  L ++  ++L+              L   
Sbjct: 141 KSIVMLGFLSKLEVLDLHGNE-ITNTGG-LTRLKKVNWIDLTGQKCVNEPVKYQPELYIT 198

Query: 642 ESLDLSYNKL 651
            ++     + 
Sbjct: 199 NTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 32/215 (14%), Positives = 67/215 (31%), Gaps = 58/215 (26%)

Query: 221 LENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDI----LPSL 276
           ++  T L++L+L ++ ++     P+     L  L V+ N         + ++       L
Sbjct: 59  MQFFTNLKELHLSHNQISDLS--PLKDLTKLEELSVNRNR--------LKNLNGIPSACL 108

Query: 277 ISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLK 336
               +  N L      S  ++  L+IL + NN+L             ++  L        
Sbjct: 109 SRLFLDNNEL--RDTDSLIHLKNLEILSIRNNKLK------------SIVMLG------- 147

Query: 337 GHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTG 396
                    L+ L  L L GN +       L++   +  + L       +  ++   L  
Sbjct: 148 --------FLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYI 197

Query: 397 LKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNI 431
              +  P+                +    IS+   
Sbjct: 198 TNTVKDPDGRW-------------ISPYYISNGGS 219

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 10/158 (6%)

Query: 228 RQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALD 287
            +L L +  L             L +L++  N  Q  +   + D L  L +  ++ N L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLA 96

Query: 288 SSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLK----GHMFSRN 343
           S     F ++  L  L L  NQL   +P  +      L+ L L+ N L+    G  F + 
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAG-AFDK- 153

Query: 344 FNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNN 381
             LTNL++L L  N L+     +  +   L+ + L  N
Sbjct: 154 --LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 59.3 bits (144), Expect = 6e-10
 Identities = 47/167 (28%), Positives = 67/167 (40%), Gaps = 30/167 (17%)

Query: 374 EGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG-FCQLYSLQILDISDNNIS 432
           E L L +  L+         LT L  + +  N L+  +  G F  L  L  L +++N ++
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLA 96

Query: 433 GSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWV-DGLS 491
            SLP                        G F H + L  L L  N+L  S+P+ V D L+
Sbjct: 97  -SLPL-----------------------GVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLT 131

Query: 492 QLSHLILGHNNLEGEVPVQLCE-LNQLQLLDLSNNNLHGPIPPCFDN 537
           +L  L L  N L+  +P    + L  LQ L LS N L       FD 
Sbjct: 132 KLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 45/183 (24%), Positives = 68/183 (37%), Gaps = 32/183 (17%)

Query: 347 TNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENH 406
            +   L L+   L      +    + L  L L+ N L                       
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT--------------------- 73

Query: 407 LEGPIPVG-FCQLYSLQILDISDNNISGSLPS-CFHPL-SIEQVHLSKNMLHGQLKRGTF 463
               +  G F  L  L  L +++N ++ SLP   F  L  +++++L  N L   L  G F
Sbjct: 74  ----LSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVF 127

Query: 464 FHCSSLVTLDLSYNRLNGSIPNWV-DGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDL 522
              + L  L L+ N+L  SIP    D L+ L  L L  N L+         L +LQ + L
Sbjct: 128 DRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186

Query: 523 SNN 525
             N
Sbjct: 187 FGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 48/183 (26%), Positives = 68/183 (37%), Gaps = 38/183 (20%)

Query: 472 LDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPI 531
           LDL    L         GL++L+ L L +N L+        +L +L  L L+NN L    
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 532 PPCFDNTT----LHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQG 587
              FD+ T    L+   N   SL       V D                           
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSG----VFDR-------------------------- 129

Query: 588 KVLSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDL 646
             L+ L  L L+ N+L   IP      LT +QTL+LS N L  +    F  L  ++++ L
Sbjct: 130 --LTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186

Query: 647 SYN 649
             N
Sbjct: 187 FGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 596 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN--- 652
           LDL    L          LT++  LNL +N L  L    F +L  + +L L+ N+L    
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 653 GKIPHQLVELKTL 665
             +   L +L  L
Sbjct: 100 LGVFDHLTQLDKL 112

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 11/97 (11%)

Query: 590 LSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSY 648
           L+ L  L L+ N+L   +P  +  +LT++  L L  N L  L    F  L  ++ L L+ 
Sbjct: 82  LTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140

Query: 649 NKLNGKIPH----QLVELKTLAVFSVAYNNLSGEIPE 681
           N+L   IP     +L  L+TL++      N    +P 
Sbjct: 141 NQLQ-SIPAGAFDKLTNLQTLSL----STNQLQSVPH 172

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 25/167 (14%)

Query: 77  QELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQ 136
           ++L + +  L          +T L  L++  NQL  ++S+     LT +  L L+NN   
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 137 IPISLEP-LFNH-SRLKIFDAANNEIKA-------EITESHSLTAPNFQLQALSLSSGYG 187
              SL   +F+H ++L       N++K+        +T+   L     QLQ  S+ +G  
Sbjct: 97  ---SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ--SIPAGAF 151

Query: 188 DGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVN 234
           D +T  + L     L   +L  V      P+   +   KL+ + L  
Sbjct: 152 DKLTNLQTLS----LSTNQLQSV------PHGAFDRLGKLQTITLFG 188

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 9/98 (9%)

Query: 288 SSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLK---GHMFSRNF 344
           + +P    N   L ++DLSNN+++  +      +   L  L LS N L+      F    
Sbjct: 44  TLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDG-- 100

Query: 345 NLTNLRSLQLEGNHLEGEIPQ-SLSKCSSLEGLYLNNN 381
            L +LR L L GN +   +P+ + +  S+L  L +  N
Sbjct: 101 -LKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 52.3 bits (126), Expect = 8e-08
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 441 PLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWV-DGLSQLSHLILG 499
           P  + +++L  N     L      +   L  +DLS NR++ ++ N     ++QL  LIL 
Sbjct: 30  PRDVTELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILS 86

Query: 500 HNNLEGEVPVQLCE-LNQLQLLDLSNNNL 527
           +N L   +P +  + L  L+LL L  N++
Sbjct: 87  YNRLR-CIPPRTFDGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 596 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 655
           L L  N+    +P ++ N   +  ++LS+N ++ L   +FSN+  + +L LSYN+L   I
Sbjct: 36  LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-I 93

Query: 656 PH----QLVELKTLAVFSVAYNNLSGEIPE 681
           P      L  L+ L   S+  N++S  +PE
Sbjct: 94  PPRTFDGLKSLRLL---SLHGNDIS-VVPE 119

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 6/109 (5%)

Query: 347 TNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENH 406
            ++  L L+GN     +P+ LS    L  + L+NN +S    +   N+T L  +I+  N 
Sbjct: 31  RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89

Query: 407 LEGPIPVG-FCQLYSLQILDISDNNISGSLP-SCFHPL-SIEQVHLSKN 452
           L   IP   F  L SL++L +  N+IS  +P   F+ L ++  + +  N
Sbjct: 90  LRC-IPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 7/87 (8%)

Query: 77  QELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQ 136
            ELY+D N     +P  L+N   L ++D+S+N+++ ++S+    ++T +  L+LS N  +
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR 91

Query: 137 IPISLEP-LFNH-SRLKIFDAANNEIK 161
               + P  F+    L++     N+I 
Sbjct: 92  ---CIPPRTFDGLKSLRLLSLHGNDIS 115

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 58  LGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLP-WCLANMTSLRILDVSSNQLTGSISS 116
           L  N   ++ + L +  HL  + + NN +  +L     +NMT L  L +S N+L   I  
Sbjct: 38  LDGNQFTLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR-CIPP 95

Query: 117 SPLVHLTSIEELMLSNNHFQ-IP 138
                L S+  L L  N    +P
Sbjct: 96  RTFDGLKSLRLLSLHGNDISVVP 118

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 58.9 bits (143), Expect = 7e-10
 Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 16/129 (12%)

Query: 284 NALDSSIPSSFGNMNFLQILDLSNNQLT---GEIPEHLAVSCVNLEFLALSNNNLK---- 336
           N +    P  F ++  L+ L L +NQL      + + L      L  L L  N L     
Sbjct: 50  NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL----TQLTVLDLGTNQLTVLPS 105

Query: 337 GHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTG 396
             +F R   L +L+ L +  N L  E+P+ + + + L  L L+ N L          L+ 
Sbjct: 106 A-VFDR---LVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160

Query: 397 LKHIIMPEN 405
           L H  +  N
Sbjct: 161 LTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 39/118 (33%), Positives = 53/118 (44%), Gaps = 5/118 (4%)

Query: 422 QILDISDNNISGSLPSCFHPLS-IEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLN 480
           QIL + DN I+   P  F  L  +++++L  N L   L  G F   + L  LDL  N+L 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 481 GSIPNWV-DGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDN 537
             +P+ V D L  L  L +  N L  E+P  +  L  L  L L  N L       FD 
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 27/153 (17%)

Query: 374 EGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG-FCQLYSLQILDISDNNIS 432
           + LYL++N ++   P    +L  LK + +  N L   +PVG F  L  L +LD+  N ++
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTNQLT 101

Query: 433 GSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQ 492
             LPS                         F     L  L +  N+L   +P  ++ L+ 
Sbjct: 102 -VLPS-----------------------AVFDRLVHLKELFMCCNKLT-ELPRGIERLTH 136

Query: 493 LSHLILGHNNLEGEVPVQLCELNQLQLLDLSNN 525
           L+HL L  N L+         L+ L    L  N
Sbjct: 137 LTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 22/139 (15%)

Query: 301 QILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLK----GHMFSRNFNLTNLRSLQLEG 356
           QIL L +NQ+T ++   +  S +NL+ L L +N L     G +F     LT L  L L  
Sbjct: 43  QILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVG-VFDS---LTQLTVLDLGT 97

Query: 357 NHLEGEIPQSLS-----KCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPI 411
           N L       L      +   L+ L++  N L+ ++PR +  LT L H+ + +N L+  I
Sbjct: 98  NQL-----TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-I 150

Query: 412 PVG-FCQLYSLQILDISDN 429
           P G F +L SL    +  N
Sbjct: 151 PHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.0 bits (112), Expect = 8e-06
 Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 5/129 (3%)

Query: 254 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGE 313
           L + +N     +   + D L +L    +  N L +     F ++  L +LDL  NQLT  
Sbjct: 45  LYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-V 102

Query: 314 IPEHLAVSCVNLEFLALSNNNLKGHMFSRNF-NLTNLRSLQLEGNHLEGEIPQSLSKCSS 372
           +P  +    V+L+ L +  N L      R    LT+L  L L+ N L+     +  + SS
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160

Query: 373 LEGLYLNNN 381
           L   YL  N
Sbjct: 161 LTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 43/179 (24%), Positives = 53/179 (29%), Gaps = 55/179 (30%)

Query: 472 LDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLC-ELNQLQLLDLSNNNLHGP 530
           L L  N++    P   D L  L  L LG N L   +PV +   L QL +LDL  N L   
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVL 103

Query: 531 IPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVL 590
               FD                                                     L
Sbjct: 104 PSAVFDR----------------------------------------------------L 111

Query: 591 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 649
             L  L + CNKL   +P  I  LT +  L L  N L  +    F  L  +    L  N
Sbjct: 112 VHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 590 LSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSY 648
           L  L  L L  N+L G +P  +  +LT++  L+L  N LT L  + F  L H++ L +  
Sbjct: 63  LINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCC 121

Query: 649 NKLNGKIPH---QLVELKTLAVFSVAYNNLSGEIPE 681
           NKL  ++P    +L  L  LA+      N    IP 
Sbjct: 122 NKLT-ELPRGIERLTHLTHLAL----DQNQLKSIPH 152

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 57.7 bits (140), Expect = 9e-10
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 7/116 (6%)

Query: 292 SSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNF-NLTNLR 350
           + + N    + LDL   ++   I E+L  +    + +  S+N ++       F  L  L+
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VI-ENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLK 67

Query: 351 SLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSG-KIPRWLGNLTGLKHIIMPEN 405
           +L +  N +             L  L L NNSL        L +L  L ++ +  N
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 3/100 (3%)

Query: 577 TTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFS 636
           T + I    Q         LDL   K I  I      L +   ++ S N +  L    F 
Sbjct: 5   TAELIEQAAQYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKL--DGFP 61

Query: 637 NLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLS 676
            L+ +++L ++ N++          L  L    +  N+L 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 3/89 (3%)

Query: 72  SLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 131
           +L     +   +N++R  L      +  L+ L V++N++   I       L  + EL+L+
Sbjct: 40  TLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILT 96

Query: 132 NNHFQIPISLEPLFNHSRLKIFDAANNEI 160
           NN       L+PL +   L       N +
Sbjct: 97  NNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 5/105 (4%)

Query: 423 ILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGS 482
           ++ ++   I        + +   ++ L    +   +             +D S N +   
Sbjct: 1   MVKLTAELIE-QAAQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIR-K 56

Query: 483 IPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNL 527
           +  +   L +L  L++ +N +          L  L  L L+NN+L
Sbjct: 57  LDGF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 13/113 (11%)

Query: 41  IRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSL 100
           +  ++     +  SD     N  R LD G   L  L+ L ++NN +          +  L
Sbjct: 37  LGATLDQFDAIDFSD-----NEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90

Query: 101 RILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIF 153
             L +++N L       PL  L S+  L +  N    P++ +    H RL + 
Sbjct: 91  TELILTNNSLVELGDLDPLASLKSLTYLCILRN----PVTNKK---HYRLYVI 136

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 11/84 (13%)

Query: 587 GKVLSLLSGLDLSCNKL--IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESL 644
           G  L     +D S N++  +   P     L R++TL +++N +  +       L  +  L
Sbjct: 38  GATLDQFDAIDFSDNEIRKLDGFP----LLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93

Query: 645 DLSYNKLNGKIPHQLVELKTLAVF 668
            L+ N L      +L +L  LA  
Sbjct: 94  ILTNNSLV-----ELGDLDPLASL 112

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 25/135 (18%), Positives = 53/135 (39%), Gaps = 8/135 (5%)

Query: 221 LENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFN 280
             N  + R+L L    +     L     +    +D S+N  +    ++   +L  L +  
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLGATLDQ-FDAIDFSDNEIR---KLDGFPLLRRLKTLL 70

Query: 281 ISMNALDSSIPSSFGNMNFLQILDLSNNQLT--GEIPEHLAVSCVNLEFLALSNNNLKGH 338
           ++ N +          +  L  L L+NN L   G++ + LA S  +L +L +  N +   
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLA-SLKSLTYLCILRNPVTNK 128

Query: 339 MFSRNFNLTNLRSLQ 353
              R + +  +  ++
Sbjct: 129 KHYRLYVIYKVPQVR 143

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 25/115 (21%), Positives = 41/115 (35%), Gaps = 8/115 (6%)

Query: 414 GFCQLYSLQILDISDNNIS--GSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVT 471
            +      + LD+    I    +L +       + +  S N +    K   F     L T
Sbjct: 14  QYTNAVRDRELDLRGYKIPVIENLGATLDQF--DAIDFSDNEIR---KLDGFPLLRRLKT 68

Query: 472 LDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQ-LCELNQLQLLDLSNN 525
           L ++ NR+          L  L+ LIL +N+L     +  L  L  L  L +  N
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 59.8 bits (144), Expect = 1e-09
 Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 2/87 (2%)

Query: 590 LSLLSGLDLSCNKLIGHIPPQ-IGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSY 648
              L+ L +   + + H+  + +  L  ++ L +  + L  + P  F     +  L+LS+
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 649 NKLNGKIPHQLVELKTLAVFSVAYNNL 675
           N L   +  + V+  +L    ++ N L
Sbjct: 90  NALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 58.6 bits (141), Expect = 3e-09
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 1/95 (1%)

Query: 362 EIPQSLSKCSSLEGLYLNNNSLSGKIPRW-LGNLTGLKHIIMPENHLEGPIPVGFCQLYS 420
           +    L    +L  LY+ N      +    L  L  L+++ + ++ L    P  F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 421 LQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLH 455
           L  L++S N +          LS++++ LS N LH
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.4 bits (130), Expect = 6e-08
 Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 6/95 (6%)

Query: 68  QGLCSLMHLQELYIDNNDLRGSLPW-CLANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 126
             L    +L ELYI+N      L    L  +  LR L +  + L   ++         + 
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLS 83

Query: 127 ELMLSNNHFQIPISLEP-LFNHSRLKIFDAANNEI 160
            L LS N  +   SL         L+    + N +
Sbjct: 84  RLNLSFNALE---SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.9 bits (121), Expect = 8e-07
 Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 3/107 (2%)

Query: 597 DLSC-NKLIGHIPPQIGNLTRIQTLNLSHNN-LTGLIPSTFSNLKHIESLDLSYNKLNGK 654
            L C           +     +  L + +   L  L       L  + +L +  + L   
Sbjct: 12  GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 655 IPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC 701
            P        L+  ++++N L   +   T Q  +  E    GN   C
Sbjct: 72  APDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.1 bits (119), Expect = 1e-06
 Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 1/77 (1%)

Query: 467 SSLVTLDLSYNRLNGSIPNWV-DGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNN 525
            +L  L +   +    +      GL +L +L +  + L    P       +L  L+LS N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 526 NLHGPIPPCFDNTTLHE 542
            L           +L E
Sbjct: 91  ALESLSWKTVQGLSLQE 107

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 2e-06
 Identities = 19/125 (15%), Positives = 34/125 (27%), Gaps = 25/125 (20%)

Query: 283 MNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSR 342
                            L  L + N Q    +                            
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELR---------------------DLR- 53

Query: 343 NFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIM 402
              L  LR+L +  + L    P +      L  L L+ N+L     + +  L+ L+ +++
Sbjct: 54  --GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL 110

Query: 403 PENHL 407
             N L
Sbjct: 111 SGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.0 bits (116), Expect = 3e-06
 Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 3/114 (2%)

Query: 416 CQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLS 475
           C  +    L  + +    SL       ++ ++++        L+         L  L + 
Sbjct: 5   CCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 476 YNRLNGSIPNWV-DGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLH 528
            + L   +         +LS L L  N LE  +  +  +   LQ L LS N LH
Sbjct: 65  KSGLR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 5e-06
 Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 8/106 (7%)

Query: 32  ALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQG-LCSLMHLQELYIDNNDLRGSL 90
                 L  +     +L  L +          + L+   L  L  L+ L I  + LR   
Sbjct: 18  DGALDSLHHLP-GAENLTELYIE----NQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA 72

Query: 91  PWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQ 136
           P        L  L++S N L  S+S   +  L S++EL+LS N   
Sbjct: 73  PDAFHFTPRLSRLNLSFNALE-SLSWKTVQGL-SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 2/85 (2%)

Query: 251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQL 310
           L  L + N     H+ +     L  L +  I  + L    P +F     L  L+LS N L
Sbjct: 33  LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92

Query: 311 TGEIPEHLAVSCVNLEFLALSNNNL 335
              +     V  ++L+ L LS N L
Sbjct: 93  E-SLSWK-TVQGLSLQELVLSGNPL 115

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 60.3 bits (146), Expect = 2e-09
 Identities = 66/422 (15%), Positives = 139/422 (32%), Gaps = 41/422 (9%)

Query: 17  HFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHL 76
            FK+   L +       +T  L  I  +  +LK L + +S +   S   L     +   L
Sbjct: 128 SFKNFKVLVLSSC-EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSL 186

Query: 77  QELYIDNNDLR---GSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNN 133
             L I          +L   +    +L+ L ++       +++  L     +EEL     
Sbjct: 187 VSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGY 245

Query: 134 HFQIPISL-----EPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGD 188
             ++   +       L     L+      + + A +    ++ +   +L  L+LS     
Sbjct: 246 TAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLP---AVYSVCSRLTTLNLSYATVQ 302

Query: 189 GVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVN-DSLTGPFRLPI-- 245
                K L     L+ + +     D      L      LR+L +   +       + +  
Sbjct: 303 SYDLVKLLCQCPKLQRLWVLDYIEDAGL-EVLASTCKDLRELRVFPSEPFVMEPNVALTE 361

Query: 246 -------HSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNIS-----------MNALD 287
                       L  +            + I    P++  F +            +  LD
Sbjct: 362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD 421

Query: 288 SSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNL--KGHMFSRNFN 345
               +   +   L+ L LS   LT ++ E++      +E L+++       G M      
Sbjct: 422 IGFGAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYAKKMEMLSVAFAGDSDLG-MHHVLSG 479

Query: 346 LTNLRSLQLEG-NHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG-NLTGLKHIIMP 403
             +LR L++      +  +  + SK  ++  L++++ S+S    + LG  +  L   ++ 
Sbjct: 480 CDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVID 539

Query: 404 EN 405
           E 
Sbjct: 540 ER 541

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 70/495 (14%), Positives = 151/495 (30%), Gaps = 80/495 (16%)

Query: 14  GFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSL 73
           G PHF   + +   +        +++ +  S   L+ + +    +  +   ++ +     
Sbjct: 75  GKPHFADFNLVPDGW--GGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKS-FK- 130

Query: 74  MHLQELYIDNNDL--RGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHL----TSIEE 127
            + + L + + +      L    A   +L+ LD+  + +   +S   L H     TS+  
Sbjct: 131 -NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVD-DVSGHWLSHFPDTYTSLVS 188

Query: 128 LMLSNNHFQI-PISLEPLFNHSR-LKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSG 185
           L +S    ++   +LE L      LK            + +  +L     QL+ L     
Sbjct: 189 LNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP---LEKLATLLQRAPQLEELGTGG- 244

Query: 186 YGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPI 245
                       +  ++     S ++         L    +LR L    D++        
Sbjct: 245 ------------YTAEVRPDVYSGLS-------VALSGCKELRCLSGFWDAVPAYLPAVY 285

Query: 246 HSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDL 305
                L  L++S    Q +  V++    P L    +     D+ +         L+ L +
Sbjct: 286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRV 345

Query: 306 S---------NNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSR-NFNLTNLRSLQLE 355
                     N  LT +    +++ C  LE +      +          N  N+   +L 
Sbjct: 346 FPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405

Query: 356 GNHLEGEIPQS-----------LSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPE 404
               +     +           +  C  L  L     SLSG +          ++I    
Sbjct: 406 IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRL-----SLSGLL-----TDKVFEYIGTYA 455

Query: 405 NHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFF 464
             +E         + S+     SD  +   L  C    S+ ++ +       +       
Sbjct: 456 KKME---------MLSVAFAGDSDLGMHHVLSGC---DSLRKLEIRDCPFGDKALLANAS 503

Query: 465 HCSSLVTLDLSYNRL 479
              ++ +L +S   +
Sbjct: 504 KLETMRSLWMSSCSV 518

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 56.1 bits (135), Expect = 3e-08
 Identities = 60/494 (12%), Positives = 147/494 (29%), Gaps = 53/494 (10%)

Query: 46  PSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDV 105
           P ++ + +             D  L        +Y     +  S          L  + +
Sbjct: 66  PKVRSVELKGK------PHFADFNLVPDGWGGYVYPWIEAMSSSYT-------WLEEIRL 112

Query: 106 SSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNH-SRLKIFDAANNEIKAEI 164
               +T            + + L+LS+        L  +      LK  D   +++    
Sbjct: 113 KRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVS 172

Query: 165 TES-HSLTAPNFQLQALSLSSGYG--DGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLL 221
                        L +L++S            + +    +L+ ++L+      +    LL
Sbjct: 173 GHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT-LL 231

Query: 222 ENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNI 281
           +   +L +L        G +   +    +       +                 L   + 
Sbjct: 232 QRAPQLEELGT------GGYTAEVRPDVYSGLSVALSG-------------CKELRCLSG 272

Query: 282 SMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFS 341
             +A+ + +P+ +   + L  L+LS   +       L   C  L+ L + +      +  
Sbjct: 273 FWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV 332

Query: 342 RNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLT--GLKH 399
                 +LR L++  +      P        L  + +    L   +  +   +T   L  
Sbjct: 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLE-SVLYFCRQMTNAALIT 391

Query: 400 IIMPENHLE----GPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLH 455
           I     ++       I        +L+ LDI    I            + ++ LS  +L 
Sbjct: 392 IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK------DLRRLSLS-GLLT 444

Query: 456 GQLKRGTFFHCSSLVTLDLSYNRL-NGSIPNWVDGLSQLSHLILGH-NNLEGEVPVQLCE 513
            ++      +   +  L +++    +  + + + G   L  L +      +  +     +
Sbjct: 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASK 504

Query: 514 LNQLQLLDLSNNNL 527
           L  ++ L +S+ ++
Sbjct: 505 LETMRSLWMSSCSV 518

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 66/474 (13%), Positives = 136/474 (28%), Gaps = 94/474 (19%)

Query: 195 FLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVN-DSLTGP-FRLPIHSHRWLR 252
                  LE++RL  + +  +    + ++    + L L + +  +         + R L+
Sbjct: 100 MSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLK 159

Query: 253 FLDVSNNNFQ---GHIPVEIGDILPSLISFNISMNAL---DSSIPSSFGNMNFLQILDLS 306
            LD+  ++     GH      D   SL+S NIS  A     S++         L+ L L+
Sbjct: 160 ELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219

Query: 307 NNQLTGEIPEHLAVSCVNLEFLALSN-----NNLKGHMFSRNF-NLTNLRSLQLEGNHLE 360
                 ++   L      LE L                 S        LR L    + + 
Sbjct: 220 RAVPLEKL-ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP 278

Query: 361 GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYS 420
             +P   S CS L  L L+  ++             L  ++              CQ   
Sbjct: 279 AYLPAVYSVCSRLTTLNLSYATVQSY---------DLVKLL--------------CQCPK 315

Query: 421 LQILD----ISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTF---------FHCS 467
           LQ L     I D  +     +C     + ++ +  +                      C 
Sbjct: 316 LQRLWVLDYIEDAGLEVLASTC---KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCP 372

Query: 468 SLVTLDLSYNRL-NGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELN----------- 515
            L ++     ++ N ++         ++   L     +    + L  L+           
Sbjct: 373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK 432

Query: 516 QLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFE 575
            L+ L LS             +         +  ++     L +                
Sbjct: 433 DLRRLSLSG---------LLTDKVFEYIGTYAKKME----MLSVAFAGD----------- 468

Query: 576 FTTKNIAYIYQGKVLSLLSGLDLS-CNKLIGHIPPQIGNLTRIQTLNLSHNNLT 628
            +   + ++  G     L  L++  C      +      L  +++L +S  +++
Sbjct: 469 -SDLGMHHVLSG--CDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 59.2 bits (143), Expect = 3e-09
 Identities = 56/466 (12%), Positives = 133/466 (28%), Gaps = 73/466 (15%)

Query: 243 LPIHSHRWLRFLDVSNNNFQGHIPVEIGDI---LPSLISFNIS-MNALDSSIPS-SFGNM 297
           L +         ++   N+ G++   + +I   L  L S +   M   D  +   +    
Sbjct: 78  LKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARA 137

Query: 298 NFLQILDLSN-NQLTGEIPEHLAVSCVNLEFLALSNNNL--KGHMFSRNF--NLTNLRSL 352
           + L+ L L   +  T +    +   C  ++ L +  ++   K   +      + T+L  L
Sbjct: 138 DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVL 197

Query: 353 QLEGNHLEGEIPQSL----SKCSSLEGLYLNNNSLS--GKIPRWLGNLTGLKHIIMPENH 406
                      P+ L      C SL  + + +  +       +   NL       + E+ 
Sbjct: 198 NFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDI 257

Query: 407 LEGPIPVGFCQLYSLQIL---DISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTF 463
                 +       L  L    +  N +    P       I ++ L   +L  +      
Sbjct: 258 GMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQ---IRKLDLLYALLETEDHCTLI 314

Query: 464 FHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELN-------- 515
             C +L  L+      +  +        QL  L +     E  +  +   ++        
Sbjct: 315 QKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA 374

Query: 516 ----QLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFET------SLVMDSMMIP 565
               +L+ + +  +++         N +L        +L  F          + D  +  
Sbjct: 375 QGCQELEYMAVYVSDI--------TNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426

Query: 566 AEKQIHENF-------------EFTTKNIAYIYQGKVLSLLSGLDLSCNKL----IGHIP 608
             + +                   T   ++YI  G+    +  + L         +    
Sbjct: 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI--GQYSPNVRWMLLGYVGESDEGLMEF- 483

Query: 609 PQIGNLTRIQTLNLSHNNLT--GLIPSTFSNLKHIESLDLSYNKLN 652
                   +Q L +     +   +  +  + L  +  L +   + +
Sbjct: 484 --SRGCPNLQKLEMRGCCFSERAIA-AAVTKLPSLRYLWVQGYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 53.8 bits (129), Expect = 2e-07
 Identities = 59/463 (12%), Positives = 123/463 (26%), Gaps = 70/463 (15%)

Query: 93  CLANMTSLRILDVSSNQLT-GSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSR-L 150
              N+  L+ +      ++   +          +E L L          L  +  H R +
Sbjct: 107 ISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKI 166

Query: 151 KIFDAANNEIKAEITES-HSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSH 209
           K      +    +  +  H L   N  L+ L+        ++               L  
Sbjct: 167 KTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKIS------------PKDLET 214

Query: 210 VNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEI 269
                     +  N   L  + + +  +         +   L      + N    +P + 
Sbjct: 215 ----------IARNCRSLVSVKVGDFEILELVGF-FKAAANLEEFCGGSLNEDIGMPEKY 263

Query: 270 GDI--LPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEF 327
            ++     L    +S     + +P  F     ++ LDL    L  E    L   C NLE 
Sbjct: 264 MNLVFPRKLCRLGLS-YMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV 322

Query: 328 LALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSK------------CSSLEG 375
           L   N      +         L+ L++E    E  +                  C  LE 
Sbjct: 323 LETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382

Query: 376 LYLNNNSLSGK----IPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNI 431
           + +  + ++ +    I  +L NL   + +++              +  +   LD    ++
Sbjct: 383 MAVYVSDITNESLESIGTYLKNLCDFRLVLL-----------DREERITDLPLDNGVRSL 431

Query: 432 SGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFF----HCSSLVTLDLSYNRL-NGSIPNW 486
                             +  +  G L          +  ++  + L Y    +  +  +
Sbjct: 432 LIGCKKL--------RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF 483

Query: 487 VDGLSQLSHLILGHNNLEGEVPVQLCE-LNQLQLLDLSNNNLH 528
             G   L  L +                L  L+ L +      
Sbjct: 484 SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 53/234 (22%), Positives = 94/234 (40%), Gaps = 69/234 (29%)

Query: 301 QILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFN-LTNLRSLQLEGNHL 359
              +L    +T  + ++      +++ +  +N+++K     +    L N+R L L GN L
Sbjct: 22  IKANLKKKSVTDAVTQN---ELNSIDQIIANNSDIK---SVQGIQYLPNVRYLALGGNKL 75

Query: 360 EGEIPQSLS---KCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG-F 415
                  +S   + ++L  L L  N L                           +P G F
Sbjct: 76  -----HDISALKELTNLTYLILTGNQLQS-------------------------LPNGVF 105

Query: 416 CQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLS 475
            +L +L+ L + +N +  SLP                        G F   ++L  L+L+
Sbjct: 106 DKLTNLKELVLVENQLQ-SLPD-----------------------GVFDKLTNLTYLNLA 141

Query: 476 YNRLNGSIPNWV-DGLSQLSHLILGHNNLEGEVPVQLCE-LNQLQLLDLSNNNL 527
           +N+L  S+P  V D L+ L+ L L +N L+  +P  + + L QL+ L L  N L
Sbjct: 142 HNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 24/167 (14%)

Query: 225 TKLRQLYLVNDSLT--GPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNIS 282
             +R L L  + L               L +L ++ N  Q  +P  + D L +L    + 
Sbjct: 63  PNVRYLALGGNKLHDISAL----KELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLV 117

Query: 283 MNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLK----GH 338
            N L S     F  +  L  L+L++NQL   +P+ +     NL  L LS N L+    G 
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEG- 175

Query: 339 MFSRNFNLTNLRSLQLEGNHLEGEIPQ----SLSKCSSLEGLYLNNN 381
           +F +   LT L+ L+L  N L+  +P      L   +SL+ ++L++N
Sbjct: 176 VFDK---LTQLKDLRLYQNQLKS-VPDGVFDRL---TSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 46/207 (22%), Positives = 77/207 (37%), Gaps = 49/207 (23%)

Query: 468 SLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNL 527
             +  +L    +        + L+ +  +I  +++++    +Q   L  ++ L L  N L
Sbjct: 20  ETIKANLKKKSVT-DAVTQ-NELNSIDQIIANNSDIKSVQGIQ--YLPNVRYLALGGNKL 75

Query: 528 HGPIPPCFDN----TTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAY 583
           H             T L  + N   SL              P                  
Sbjct: 76  HDI--SALKELTNLTYLILTGNQLQSL--------------PNG---------------- 103

Query: 584 IYQGKVLSLLSGLDLSCNKLIGHIPPQIGN-LTRIQTLNLSHNNLTGLIPSTFSNLKHIE 642
           ++    L+ L  L L  N+L   +P  + + LT +  LNL+HN L  L    F  L ++ 
Sbjct: 104 VFDK--LTNLKELVLVENQL-QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT 160

Query: 643 SLDLSYNKLNGKIPH----QLVELKTL 665
            LDLSYN+L   +P     +L +LK L
Sbjct: 161 ELDLSYNQLQ-SLPEGVFDKLTQLKDL 186

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 6e-09
 Identities = 90/534 (16%), Positives = 162/534 (30%), Gaps = 125/534 (23%)

Query: 27  VFARTAL--NTSFL------QIIRESMPSLKYLSMSDSTLGTNS-------SRI-----L 66
            F    L  N  FL      +  + SM +  Y+   D     N        SR+     L
Sbjct: 81  KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140

Query: 67  DQGLCSLMHLQELYIDNNDLRGSLPWCLANMT--SLRILDVSSNQ---LTGSISSSP--- 118
            Q L  L   + + ID   + GS    +A     S ++      +   L     +SP   
Sbjct: 141 RQALLELRPAKNVLIDG--VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 119 ------LVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNE---IKAEITESHS 169
                 L++         S++   I + +  +    R  +          +   +  + +
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 170 LTAPNFQLQALSLSSGYGDGVTFPKFLYHQH-DLEDVR--LSHVNMDGEFPNWLLENNTK 226
             A N   + L L++ +     F       H  L+     L+   +      +L      
Sbjct: 259 WNAFNLSCKIL-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 227 L-RQLYLVNDSLTGPFRLPI-------HSHRWLRFLDVSNNNFQGHI--------PVEIG 270
           L R++   N     P RL I           W  +  V+ +     I        P E  
Sbjct: 318 LPREVLTTN-----PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

Query: 271 DILPSLISF----NISMNAL-------DSSIPSSFGNMNFLQ---ILDLSNNQLTGEIPE 316
            +   L  F    +I    L         S       +N L    +++    + T  IP 
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV--VNKLHKYSLVEKQPKESTISIPS 430

Query: 317 -HLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLE-------GNHLEGEIPQSLS 368
            +L +        AL  + +  +   + F+  +L    L+       G+HL+  I     
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK-NIEHP-E 488

Query: 369 KCSSLEGLYLNNNSLSGKI----PRW------LGNLTGLK----HIIMPENHLEGPIPVG 414
           + +    ++L+   L  KI      W      L  L  LK    +I   +N  +      
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC--DNDPK------ 540

Query: 415 FCQLYSLQILDISDN--NISGSLPSCFHPLSIEQVHLSK------NMLHGQLKR 460
               Y   +  I D    I  +L    +   + ++ L           H Q++R
Sbjct: 541 ----YERLVNAILDFLPKIEENLICSKY-TDLLRIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 2e-06
 Identities = 63/421 (14%), Positives = 123/421 (29%), Gaps = 104/421 (24%)

Query: 296 NMNFLQI--LDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNL----TNL 349
            M+F +I  L+L N      + E L      ++    S ++   H  +    +      L
Sbjct: 179 KMDF-KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD---HSSNIKLRIHSIQAEL 234

Query: 350 RSLQLEGNHLEGEIPQSLSKCSSLEGLYLNN-------NSLSGK-----IPRWLGNLTGL 397
           R L     +        L        L L N       N+ +         R+      L
Sbjct: 235 RRLLKSKPY-----ENCL--------LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281

Query: 398 KHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPS--C-FHPLSI--------EQ 446
                    L+    +         +L    +     LP      +P  +        + 
Sbjct: 282 SAATTTHISLD-HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340

Query: 447 VHLSKNMLHGQLKRGTFFHCSSLVTLDLS-----YNRL-----NGSIPNWVDGLSQLSHL 496
           +    N  H    + T    SSL  L+ +     ++RL     +  IP  +     LS  
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-----LS-- 393

Query: 497 ILGHNNLEGEVPVQLCELNQLQLLDLSNNN----LHGPI----PPCFDNTTLHESSNNSY 548
           ++  + ++ +V V + +L++  L++         +            +   LH S  + Y
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453

Query: 549 SLK----PFETSLVMDSMMI------------PAEK-----QIHENFEFTTKNI-----A 582
           ++       +                        E+      +  +F F  + I     A
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513

Query: 583 YIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRI--QTLNLSHNNLTGLIPSTFSNLKH 640
           +   G +L+ L    L       +I        R+    L+        LI S +++L  
Sbjct: 514 WNASGSILNTL--QQL--KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569

Query: 641 I 641
           I
Sbjct: 570 I 570

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 38/138 (27%), Positives = 51/138 (36%), Gaps = 8/138 (5%)

Query: 300 LQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNF-NLTNLRSLQLEGNH 358
           ++ L L N +      E L    VNLEFL+L N  L       N   L  L+ L+L  N 
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS---VSNLPKLPKLKKLELSENR 82

Query: 359 LEGEIPQSLSKCSSLEGLYLNNNSLSG-KIPRWLGNLTGLKHIIMPEN---HLEGPIPVG 414
           + G +     K  +L  L L+ N L        L  L  LK + +      +L       
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESV 142

Query: 415 FCQLYSLQILDISDNNIS 432
           F  L  L  LD  D    
Sbjct: 143 FKLLPQLTYLDGYDREDQ 160

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 5/127 (3%)

Query: 36  SFLQIIRESMPSLKYLSMSDSTLGTNSSRI--LDQGLCSLMHLQELYIDNNDLRGSLPWC 93
              + I   + +    ++ +  L    S    ++      ++L+ L + N  L  S+   
Sbjct: 9   DMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVS-N 66

Query: 94  LANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIF 153
           L  +  L+ L++S N++           L ++  L LS N  +   +LEPL     LK  
Sbjct: 67  LPKLPKLKKLELSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125

Query: 154 DAANNEI 160
           D  N E+
Sbjct: 126 DLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.3 bits (110), Expect = 6e-06
 Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 13/111 (11%)

Query: 43  ESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRI 102
               +L++LS+ +  L      +    L  L  L++L +  N + G L      + +L  
Sbjct: 46  AEFVNLEFLSLINVGL----ISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99

Query: 103 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIF 153
           L++S N+L    +  PL  L  ++ L L N      ++        R  +F
Sbjct: 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNC----EVTNLN---DYRESVF 143

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 596 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 655
           LD   +   G I         ++ L+L +  L  +  S    L  ++ L+LS N++ G +
Sbjct: 31  LDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGL 87

Query: 656 PHQLVELKTLAVFSVAYNNLS 676
                +L  L   +++ N L 
Sbjct: 88  DMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 29/134 (21%), Positives = 43/134 (32%), Gaps = 8/134 (5%)

Query: 223 NNTKLRQLYLVNDSLTGPFRLPIHSHRW-LRFLDVSNNNFQGHIPVEIGDILPSLISFNI 281
               +R+L L N          + +    L FL + N        V     LP L    +
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS---VSNLPKLPKLKKLEL 78

Query: 282 SMNALDSSIPSSFGNMNFLQILDLSNNQLT--GEIPEHLAVSCVNLEFLALSNNNLKGHM 339
           S N +   +      +  L  L+LS N+L     + E L      L+ L L N  +    
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLK-KLECLKSLDLFNCEVTNLN 136

Query: 340 FSRNFNLTNLRSLQ 353
             R      L  L 
Sbjct: 137 DYRESVFKLLPQLT 150

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 593 LSGLDLSCNKL--IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNK 650
           L  L L    L  + ++P     L +++ L LS N + G +      L ++  L+LS NK
Sbjct: 51  LEFLSLINVGLISVSNLP----KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK 106

Query: 651 LN 652
           L 
Sbjct: 107 LK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 4/104 (3%)

Query: 423 ILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGS 482
           +LD   +N           +++E + L    L              L  L+LS NR+ G 
Sbjct: 30  VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI---SVSNLPKLPKLKKLELSENRIFGG 86

Query: 483 IPNWVDGLSQLSHLILGHNNLEGEVPVQ-LCELNQLQLLDLSNN 525
           +    + L  L+HL L  N L+    ++ L +L  L+ LDL N 
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 441 PLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGH 500
           P ++ ++ L     +     G      +L  L L    L  S+ N +  L +L  L L  
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSE 80

Query: 501 NNLEGEVPVQLCELNQLQLLDLSNNNL 527
           N + G + +   +L  L  L+LS N L
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKL 107

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 14/112 (12%)

Query: 301 QILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKG---HMFSRNFNLTNLRSLQLEGN 357
             L L++N+L     + L     +L  L L  N L G   + F      ++++ LQL  N
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG---ASHIQELQLGEN 88

Query: 358 HLEGEIPQSL-SKCSSLEGLYLNNNSLSGKIPRWLG---NLTGLKHIIMPEN 405
            ++ EI   +      L+ L L +N +S  +    G   +L  L  + +  N
Sbjct: 89  KIK-EISNKMFLGLHQLKTLNLYDNQISC-VMP--GSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 10/112 (8%)

Query: 441 PLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWV-DGLSQLSHLILG 499
           PL   ++ L+ N L      G F     LV L+L  N+L   I     +G S +  L LG
Sbjct: 28  PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLG 86

Query: 500 HNNLEGEVPVQLCE-LNQLQLLDLSNNNLHGPIPP-CFDN----TTLHESSN 545
            N ++ E+  ++   L+QL+ L+L +N +   + P  F++    T+L+ +SN
Sbjct: 87  ENKIK-EISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 7/107 (6%)

Query: 254 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGE 313
           L +++N         +   LP L+   +  N L    P++F   + +Q L L  N++  E
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-E 92

Query: 314 IPEHLAVSCVNLEFLALSNNNLKGHM---FSRNFNLTNLRSLQLEGN 357
           I   + +    L+ L L +N +   M   F    +L +L SL L  N
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQISCVMPGSFE---HLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 8/76 (10%)

Query: 596 LDLSCNKLIGHIPPQ--IGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG 653
           L L+ N+ +G I      G L  +  L L  N LTG+ P+ F    HI+ L L  NK+  
Sbjct: 34  LLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK- 91

Query: 654 KIPH----QLVELKTL 665
           +I +     L +LKTL
Sbjct: 92  EISNKMFLGLHQLKTL 107

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 590 LSLLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSY 648
           L  L  L+L  N+L G I P      + IQ L L  N +  +    F  L  +++L+L  
Sbjct: 53  LPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 111

Query: 649 NKLNGKIPH----QLVELKTLAVFS 669
           N+++  +       L  L +L + S
Sbjct: 112 NQISC-VMPGSFEHLNSLTSLNLAS 135

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 5/108 (4%)

Query: 300 LQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNF-NLTNLRSLQLEGNH 358
           ++ L L N++      E L      LEFL+  N  L       N   L  L+ L+L  N 
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA---NLPKLNKLKKLELSDNR 75

Query: 359 LEGEIPQSLSKCSSLEGLYLNNNSLSG-KIPRWLGNLTGLKHIIMPEN 405
           + G +     KC +L  L L+ N +        L  L  LK + +   
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 51.6 bits (124), Expect = 7e-08
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 342 RNFNLTNLRSLQLEGNHL-EGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHI 400
           RN   ++++ L L+ +   EG++     +   LE L   N  L+  I   L  L  LK +
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKL 69

Query: 401 IMPENHLEGPIPVGFCQLYSLQILDISDNNIS 432
            + +N + G + V   +  +L  L++S N I 
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 6/123 (4%)

Query: 38  LQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANM 97
           L++   +   +K L + +S   +N  ++          L+ L   N  L  S+   L  +
Sbjct: 9   LELRNRTPSDVKELVLDNS--RSNEGKLEG-LTDEFEELEFLSTINVGLT-SIA-NLPKL 63

Query: 98  TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAAN 157
             L+ L++S N+++            ++  L LS N  +   ++EPL     LK  D  N
Sbjct: 64  NKLKKLELSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

Query: 158 NEI 160
            E+
Sbjct: 123 CEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 7/98 (7%)

Query: 579 KNIAYIYQGKVLSLLSGLDLSCNKL--IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFS 636
                         L  L      L  I ++P     L +++ L LS N ++G +     
Sbjct: 30  NEGKLEGLTDEFEELEFLSTINVGLTSIANLP----KLNKLKKLELSDNRVSGGLEVLAE 85

Query: 637 NLKHIESLDLSYNKLNG-KIPHQLVELKTLAVFSVAYN 673
              ++  L+LS NK+        L +L+ L    +   
Sbjct: 86  KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 16/99 (16%), Positives = 41/99 (41%), Gaps = 3/99 (3%)

Query: 579 KNIAYIYQGKVLSLLSGLDLSCNKL-IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSN 637
           + I    + +  S +  L L  ++   G +         ++ L+  +  LT +  +    
Sbjct: 5   RRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK 62

Query: 638 LKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLS 676
           L  ++ L+LS N+++G +     +   L   +++ N + 
Sbjct: 63  LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 28/135 (20%)

Query: 393 NLTGLKHIIMPENHL-EGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSK 451
             + +K +++  +   EG +     +   L+ L   +  ++          SI  +    
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT----------SIANLP--- 61

Query: 452 NMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEG-EVPVQ 510
                          + L  L+LS NR++G +    +    L+HL L  N ++       
Sbjct: 62  -------------KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP 108

Query: 511 LCELNQLQLLDLSNN 525
           L +L  L+ LDL N 
Sbjct: 109 LKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 2/88 (2%)

Query: 440 HPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILG 499
            P  ++++ L  +  +     G       L  L      L  SI N +  L++L  L L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELS 72

Query: 500 HNNLEGEVPVQLCELNQLQLLDLSNNNL 527
            N + G + V   +   L  L+LS N +
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 23/104 (22%), Positives = 32/104 (30%), Gaps = 5/104 (4%)

Query: 251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQL 310
           L FL   N        +     L  L    +S N +   +         L  L+LS N++
Sbjct: 44  LEFLSTINVGLTS---IANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

Query: 311 TG-EIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQ 353
                 E L     NL+ L L N  +      R      L  L 
Sbjct: 101 KDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT 143

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 36/185 (19%), Positives = 70/185 (37%), Gaps = 55/185 (29%)

Query: 343 NFNLTNLRSLQLEGNHLE-GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHII 401
           +   T    ++L G      ++  +LS   + + L L+ N++  KI     +L+G+++  
Sbjct: 19  SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KI----SSLSGMEN-- 71

Query: 402 MPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRG 461
                              L+IL +  N I            IE  +L            
Sbjct: 72  -------------------LRILSLGRNLIK----------KIE--NLDAV--------- 91

Query: 462 TFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQ-LCELNQLQLL 520
                 +L  L +SYN++  S+   ++ L  L  L + +N +     +  L  L++L+ L
Sbjct: 92  ----ADTLEELWISYNQIA-SLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL 145

Query: 521 DLSNN 525
            L+ N
Sbjct: 146 LLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 27/136 (19%), Positives = 55/136 (40%), Gaps = 43/136 (31%)

Query: 303 LDLSNNQLTGEIPEHLAVSCVNLEFLALSNN------NLKGHMFSRNFNLTNLRSLQLEG 356
           L      +  ++   L+ +    + LALS N      +L          + NLR L L  
Sbjct: 30  LHGMIPPIE-KMDATLS-TLKACKHLALSTNNIEKISSLS--------GMENLRILSLGR 79

Query: 357 NHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFC 416
           N ++ +I    +   +LE L+++ N ++        +L+G++                  
Sbjct: 80  NLIK-KIENLDAVADTLEELWISYNQIA--------SLSGIEK----------------- 113

Query: 417 QLYSLQILDISDNNIS 432
            L +L++L +S+N I+
Sbjct: 114 -LVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 28/130 (21%), Positives = 59/130 (45%), Gaps = 12/130 (9%)

Query: 43  ESMPSLKYLSMSDSTLGTNS-SRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLR 101
            ++ + K+L+     L TN+  +I    L  + +L+ L +  N ++  +    A   +L 
Sbjct: 45  STLKACKHLA-----LSTNNIEKI--SSLSGMENLRILSLGRNLIK-KIENLDAVADTLE 96

Query: 102 ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIK 161
            L +S NQ+    S S +  L ++  L +SNN       ++ L    +L+    A N + 
Sbjct: 97  ELWISYNQIA---SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153

Query: 162 AEITESHSLT 171
            +  E+++ +
Sbjct: 154 NDYKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 18/124 (14%)

Query: 251 LRFLDVSNNNFQGHIPVEIGDI-----LPSLISFNISMNALDSSIPSSFGNMNFLQILDL 305
            + L +S NN        I  I     + +L   ++  N +   I +     + L+ L +
Sbjct: 50  CKHLALSTNN--------IEKISSLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWI 100

Query: 306 SNNQLTGEIPEHLAVSCVNLEFLALSNNNLKG-HMFSRNFNLTNLRSLQLEGNHLEGEIP 364
           S NQ+   +   +    VNL  L +SNN +       +   L  L  L L GN L  +  
Sbjct: 101 SYNQIA-SL-SGIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157

Query: 365 QSLS 368
           ++ +
Sbjct: 158 ENNA 161

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 13/113 (11%)

Query: 43  ESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNN---DLRGSLPWCLANMTS 99
             M +L+ LS+       N  + ++        L+EL+I  N    L G     +  + +
Sbjct: 67  SGMENLRILSLGR-----NLIKKIENLDAVADTLEELWISYNQIASLSG-----IEKLVN 116

Query: 100 LRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKI 152
           LR+L +S+N++T       L  L  +E+L+L+ N            +  R+++
Sbjct: 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 590 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 649
           L     L LS N  I  I   +  +  ++ L+L  N +   I +  +    +E L +SYN
Sbjct: 47  LKACKHLALSTNN-IEKISS-LSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYN 103

Query: 650 KLNGKIPHQLVELKTLAVFSVAYNNLS 676
           ++   +   + +L  L V  ++ N ++
Sbjct: 104 QIA-SLSG-IEKLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 24/135 (17%), Positives = 57/135 (42%), Gaps = 14/135 (10%)

Query: 53  MSDSTLGTNSSRIL-DQGLCSLMHLQ--ELYIDNNDLRGSLPWCLANMTSLRILDVSSNQ 109
           M+ +T   ++ RI  ++        +  EL+     +   +   L+ + + + L +S+N 
Sbjct: 1   MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEK-MDATLSTLKACKHLALSTNN 59

Query: 110 LTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHS 169
           +   I  S L  + ++  L L  N  +   +L+ + +   L+    + N+I   ++    
Sbjct: 60  IE-KI--SSLSGMENLRILSLGRNLIKKIENLDAVADT--LEELWISYNQIA-SLSGIEK 113

Query: 170 LTAPNFQLQALSLSS 184
           L      L+ L +S+
Sbjct: 114 LV----NLRVLYMSN 124

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 4/81 (4%)

Query: 596 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 655
           L       I  +   +  L   + L LS NN+  +  S+ S ++++  L L  N +  KI
Sbjct: 30  LHGMIPP-IEKMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIK-KI 85

Query: 656 PHQLVELKTLAVFSVAYNNLS 676
            +      TL    ++YN ++
Sbjct: 86  ENLDAVADTLEELWISYNQIA 106

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 26/120 (21%), Positives = 40/120 (33%), Gaps = 35/120 (29%)

Query: 411 IPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLV 470
           +      L + + L +S NNI            I    LS                 +L 
Sbjct: 40  MDATLSTLKACKHLALSTNNIE----------KIS--SLS--------------GMENLR 73

Query: 471 TLDLSYNRLNGSIPNWVDGLSQLSHLILGHNN---LEGEVPVQLCELNQLQLLDLSNNNL 527
            L L  N +   I N       L  L + +N    L G     + +L  L++L +SNN +
Sbjct: 74  ILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKI 127

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 51.0 bits (122), Expect = 6e-07
 Identities = 42/226 (18%), Positives = 79/226 (34%), Gaps = 10/226 (4%)

Query: 163 EITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLE 222
            +    +    +  + A      + D      F   +  ++ + LS+  ++    + +L 
Sbjct: 58  NLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR--VQHMDLSNSVIEVSTLHGILS 115

Query: 223 NNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSN-NNFQGHIPVEIGDILPSLISFNI 281
             +KL+ L L    L+ P    +  +  L  L++S  + F       +      L   N+
Sbjct: 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 175

Query: 282 S--MNALDSSIPSSFG-NMNFLQILDLS--NNQLTGEIPEHLAVSCVNLEFLALSN-NNL 335
           S   +  +  +  +       +  L+LS     L       L   C NL  L LS+   L
Sbjct: 176 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML 235

Query: 336 KGHMFSRNFNLTNLRSLQLEG-NHLEGEIPQSLSKCSSLEGLYLNN 380
           K   F   F L  L+ L L     +  E    L +  +L+ L +  
Sbjct: 236 KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 54/291 (18%), Positives = 98/291 (33%), Gaps = 55/291 (18%)

Query: 241 FRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFL 300
           +          + LD++  N    +   +  +   +I+F    + +D  +   F     +
Sbjct: 39  WYRLASDESLWQTLDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFR-V 95

Query: 301 QILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHL- 359
           Q +DLSN+ +       +   C  L+ L+L    L   + +     +NL  L L G    
Sbjct: 96  QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF 155

Query: 360 -EGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLT--GLKHIIMPENHLEGPIPVGFC 416
            E  +   LS CS L+ L L           W  + T   ++  +   +           
Sbjct: 156 SEFALQTLLSSCSRLDELNL----------SWCFDFTEKHVQVAVAHVSE---------- 195

Query: 417 QLYSLQILDISDNNISGSLPSCFHPLSIEQV-HLSKNMLHGQLKRGTFFHCSSLVTLDLS 475
              ++  L++S              L    +  L +              C +LV LDLS
Sbjct: 196 ---TITQLNLSG---------YRKNLQKSDLSTLVR-------------RCPNLVHLDLS 230

Query: 476 Y-NRLNGSIPNWVDGLSQLSHLILGH-NNLEGEVPVQLCELNQLQLLDLSN 524
               L          L+ L HL L    ++  E  ++L E+  L+ L +  
Sbjct: 231 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.0 bits (118), Expect = 2e-06
 Identities = 26/167 (15%), Positives = 58/167 (34%), Gaps = 19/167 (11%)

Query: 219 WLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGD-ILPSL- 276
            +L+    L  L +     T    +       L+ L++ +      +  +I    LP+L 
Sbjct: 166 PVLDAMPLLNNLKI---KGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLE 222

Query: 277 ------ISFNISMNALDSSIPSSFGNMNF--LQILDLSNNQLTGEIPEHLAVSCV--NLE 326
                    +   +   +     F    F  L+ L + + +    + E    S +   LE
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE 282

Query: 327 FLALSNNNLKG----HMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSK 369
            + +S   L       +      + +L+ + ++ N+L  E+ + L K
Sbjct: 283 TMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.7 bits (107), Expect = 4e-05
 Identities = 15/96 (15%), Positives = 39/96 (40%), Gaps = 7/96 (7%)

Query: 573 NFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGN---LTRIQTLNLSHNNLTG 629
            F+        ++       L  L +   +    +         L +++T+++S   LT 
Sbjct: 234 GFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293

Query: 630 ----LIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE 661
               L+      +KH++ +++ YN L+ ++  +L +
Sbjct: 294 EGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.9 bits (97), Expect = 6e-04
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 6/86 (6%)

Query: 243 LPIHSHRWLRFLDVSNNNFQGHIPVEIG--DILPSLISFNISMNALDSS----IPSSFGN 296
                   L++L + +   Q  +       DILP L + +IS   L       +      
Sbjct: 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDK 305

Query: 297 MNFLQILDLSNNQLTGEIPEHLAVSC 322
           +  L+ +++  N L+ E+ + L  S 
Sbjct: 306 IKHLKFINMKYNYLSDEMKKELQKSL 331

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 41/119 (34%), Positives = 58/119 (48%), Gaps = 6/119 (5%)

Query: 422 QILDISDNNISGSLPSCFHPLS-IEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLN 480
             LD+  N++       F  L+ + Q++L  N L   L  G F   +SL  L+LS N+L 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 481 GSIPNWV-DGLSQLSHLILGHNNLEGEVPVQLCE-LNQLQLLDLSNNNLHGPIPPCFDN 537
            S+PN V D L+QL  L L  N L+  +P  + + L QL+ L L  N L       FD 
Sbjct: 90  -SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 12/133 (9%)

Query: 254 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGE 313
           LD+  N+ +  +P  + D L SL    +  N L S     F  +  L  L+LS NQL   
Sbjct: 33  LDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-S 90

Query: 314 IPEHLAVSCVNLEFLALSNNNLK----GHMFSRNFNLTNLRSLQLEGNHLEGEIPQ-SLS 368
           +P  +      L+ LAL+ N L+    G +F +   LT L+ L+L  N L+  +P     
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQSLPDG-VFDK---LTQLKDLRLYQNQLKS-VPDGVFD 145

Query: 369 KCSSLEGLYLNNN 381
           + +SL+ ++L++N
Sbjct: 146 RLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 33/160 (20%)

Query: 347 TNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENH 406
                L LE N L+        + +SL  LYL  N L                       
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS--------------------- 66

Query: 407 LEGPIPVG-FCQLYSLQILDISDNNISGSLPS-CFHPLS-IEQVHLSKNMLHGQLKRGTF 463
               +P G F +L SL  L++S N +  SLP+  F  L+ ++++ L+ N L   L  G F
Sbjct: 67  ----LPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVF 120

Query: 464 FHCSSLVTLDLSYNRLNGSIPNWV-DGLSQLSHLILGHNN 502
              + L  L L  N+L  S+P+ V D L+ L ++ L H+N
Sbjct: 121 DKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWL-HDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 11/112 (9%)

Query: 441 PLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWV-DGLSQLSHLILG 499
           P     + L  N L   L  G F   +SL  L L  N+L  S+PN V + L+ L++L L 
Sbjct: 27  PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS 84

Query: 500 HNNLEGEVPVQLCE-LNQLQLLDLSNNNLHGPIPP-CFDN----TTLHESSN 545
            N L+  +P  + + L QL+ L L+ N L   +P   FD       L    N
Sbjct: 85  TNQLQ-SLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQN 134

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 7/81 (8%)

Query: 590 LSLLSGLDLSCNKLIGHIPPQIGN-LTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSY 648
           L+ L+ L L  NKL   +P  + N LT +  LNLS N L  L    F  L  ++ L L+ 
Sbjct: 51  LTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109

Query: 649 NKLNGKIPH----QLVELKTL 665
           N+L   +P     +L +LK L
Sbjct: 110 NQLQ-SLPDGVFDKLTQLKDL 129

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 42/303 (13%), Positives = 93/303 (30%), Gaps = 44/303 (14%)

Query: 258 NNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFG-----NMNFLQILDLSNNQLTG 312
           +  FQ        ++L SL   N++   +     +          + L  ++L++ QL  
Sbjct: 58  HYEFQNQRFSA--EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP 115

Query: 313 EIPEHLAVSCVNLEFLALSNNNLK-------GHMFSRNFNLTNLRSLQLEGNHLEGE--- 362
                L    +    L L  N+L          +     +   + +L+L  N L      
Sbjct: 116 AGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH--DQCQITTLRLSNNPLTAAGVA 173

Query: 363 -IPQSLSKCSSLEGLYLNNNSLSGK----IPRWLGNLTGLKHIIMPENHLEGPIPVGFCQ 417
            + + L+  +S+  L L +  L  +    +   L     L+ + +  N            
Sbjct: 174 VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG---DTAALA 230

Query: 418 L-------YSLQILDISDNNIS--GSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSS 468
           L        SL++L +  N +S  G            +      +   +    + +    
Sbjct: 231 LARAAREHPSLELLHLYFNELSSEGRQVLR-DLGGAAEGGARVVVSLTEGTAVSEYWSVI 289

Query: 469 LVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCEL----NQLQLLDLSN 524
           L  +  + N  + +    V    +L    L  +      P +  +L     +++ L    
Sbjct: 290 LSEVQRNLNSWDRAR---VQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQL 346

Query: 525 NNL 527
            + 
Sbjct: 347 GSS 349

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 9/102 (8%)

Query: 284 NALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLK----GHM 339
           N L S     F  +  L  L LS NQ+   +P+ +      L  L L  N L+    G +
Sbjct: 38  NKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQSLPNG-V 95

Query: 340 FSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNN 381
           F +   LT L+ L L+ N L+        + +SL+ ++L+ N
Sbjct: 96  FDK---LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 5/99 (5%)

Query: 441 PLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWV-DGLSQLSHLILG 499
           P S  ++ L  N L   L  G F   + L  L LS N++  S+P+ V D L++L+ L L 
Sbjct: 27  PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLH 84

Query: 500 HNNLEGEVPVQLCE-LNQLQLLDLSNNNLHGPIPPCFDN 537
            N L+  +P  + + L QL+ L L  N L       FD 
Sbjct: 85  ENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDR 122

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 25/148 (16%), Positives = 64/148 (43%), Gaps = 15/148 (10%)

Query: 38  LQIIRESMPSLKYLSMSDS-TLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLAN 96
           L+ I+ + P L+ +++++   +   + +   + L +  ++++  I        + + LA 
Sbjct: 28  LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE 87

Query: 97  M----TSLRILDVSSNQLTG----SISSSPLVHLTSIEELMLSNNHFQIPIS-----LEP 143
           M     +L+ L+V SN ++G    ++  + L   TS+ EL + N    +  +        
Sbjct: 88  MLKVNNTLKSLNVESNFISGSGILALVEA-LQSNTSLIELRIDNQSQPLGNNVEMEIANM 146

Query: 144 LFNHSRLKIFDAANNEIKAEITESHSLT 171
           L  ++ L  F     +    +  S+++ 
Sbjct: 147 LEKNTTLLKFGYHFTQQGPRLRASNAMM 174

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 17/99 (17%)

Query: 288 SSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLK----GHMFSRN 343
           + IP++       Q+L L +NQ+T ++   +      L  L L NN L     G +F + 
Sbjct: 26  TGIPTT------TQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAG-VFDK- 76

Query: 344 FNLTNLRSLQLEGNHLEGEIPQ-SLSKCSSLEGLYLNNN 381
             LT L  L L  N L+  IP+ +     SL  ++L NN
Sbjct: 77  --LTQLTQLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNN 112

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 17/99 (17%)

Query: 288 SSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLK----GHMFSRN 343
           + IP+        Q L L+NNQ+T ++   +    VNL+ L  ++N L     G +F + 
Sbjct: 29  AGIPTD------KQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTG-VFDK- 79

Query: 344 FNLTNLRSLQLEGNHLEGEIPQ-SLSKCSSLEGLYLNNN 381
             LT L  L L  NHL+  IP+ +     SL  +YL NN
Sbjct: 80  --LTQLTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLYNN 115

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 10/109 (9%)

Query: 38  LQIIRESMPSLKYLSMSDS-TLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLAN 96
           +  +RE    LK +++++   +     R L +  C+  H+++  + N  +  S    L  
Sbjct: 33  INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE 92

Query: 97  M----TSLRILDVSSNQLTG----SISSSPLVHLTSIEELMLSNNHFQI 137
           +     SLR+L+V SN LT      +  S  +   SI E    N    +
Sbjct: 93  LIETSPSLRVLNVESNFLTPELLARLLRS-TLVTQSIVEFKADNQRQSV 140

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	788
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.84
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.71
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.71
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.7
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.7
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.68
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.68
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.67
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.66
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.63
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.62
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.58
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.56
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.53
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.53
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.53
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.5
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.46
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.45
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.44
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.42
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.39
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.31
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.29
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.28
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.27
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.25
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.15
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.13
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.74
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.65
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.63
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.59
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.36
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.22
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.04
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.99
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.97
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.66
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.47
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.03

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.8e-74  Score=673.90  Aligned_cols=676  Identities=29%  Similarity=0.438  Sum_probs=576.2

Q ss_pred             CCccEEEcccCCcccccc---hhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCCh--h
Q 003888           19 KSLDHLDMVFARTALNTS---FLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPW--C   93 (788)
Q Consensus        19 ~~L~~L~L~~~~~~~~~~---~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~   93 (788)
                      .+++.|+|  +++.+.|.   ++.++. ++++|+.++++.+.+    ..+++ .|+++++|++|+|++|.+++.+|.  .
T Consensus        50 ~~v~~L~L--~~~~l~g~~~~l~~~l~-~L~~L~~l~~~~~~~----~~l~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~  121 (768)
T 3rgz_A           50 DKVTSIDL--SSKPLNVGFSAVSSSLL-SLTGLESLFLSNSHI----NGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTS  121 (768)
T ss_dssp             TEEEEEEC--TTSCCCEEHHHHHHHTT-TCTTCCEEECTTSCE----EECCC-CCCCCTTCCEEECCSSEEEEEGGGGGG
T ss_pred             CcEEEEEC--CCCCcCCccCccChhHh-ccCcccccCCcCCCc----CCCch-hhccCCCCCEEECCCCcCCCcCCChHH
Confidence            57999999  99999988   888999 999999999999876    34444 799999999999999999988888  9


Q ss_pred             hcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccc--cccCCCCcEEEccCccccccccccccCC
Q 003888           94 LANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEP--LFNHSRLKIFDAANNEIKAEITESHSLT  171 (788)
Q Consensus        94 l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~~~~~  171 (788)
                      ++++++|++|++++|.+.+.+|...+.++++|++|++++|.+++..+...  +.++++|++|++++|.+.+..+.     
T Consensus       122 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----  196 (768)
T 3rgz_A          122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV-----  196 (768)
T ss_dssp             GGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC-----
T ss_pred             HhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc-----
Confidence            99999999999999999988887445899999999999999986655321  78999999999999998764332     


Q ss_pred             CCcccccEEEccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCCCCc
Q 003888          172 APNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWL  251 (788)
Q Consensus       172 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L  251 (788)
                      ....+|++|++ .++.+.+.+|. +..+++|++|++++|.+.+.+|..+ ..+++|++|++++|.+++..+..  .+++|
T Consensus       197 ~~l~~L~~L~L-s~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L  271 (768)
T 3rgz_A          197 SRCVNLEFLDV-SSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPIPPL--PLKSL  271 (768)
T ss_dssp             TTCTTCCEEEC-CSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCSSCCEESCCCC--CCTTC
T ss_pred             ccCCcCCEEEC-cCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEECCCCcccCccCcc--ccCCC
Confidence            34458999999 88888887887 8999999999999999998888776 78999999999999999877665  89999


Q ss_pred             cEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEcc
Q 003888          252 RFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALS  331 (788)
Q Consensus       252 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~  331 (788)
                      ++|++++|.+++.+|..++..+++|++|++++|.+++..|..|+++++|++|++++|.+++.+|...+..+++|++|+++
T Consensus       272 ~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls  351 (768)
T 3rgz_A          272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS  351 (768)
T ss_dssp             CEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred             CEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence            99999999999999999888779999999999999999999999999999999999999989998867789999999999


Q ss_pred             CccCCCcCcccCcCCC-CCCEEeccCCcCCCcCCccccC--CCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCccc
Q 003888          332 NNNLKGHMFSRNFNLT-NLRSLQLEGNHLEGEIPQSLSK--CSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLE  408 (788)
Q Consensus       332 ~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~--l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~  408 (788)
                      +|++++..+..+..++ +|++|++++|.+++..|..+..  +++|++|++++|.+++..|..+..+++|++|++++|.+.
T Consensus       352 ~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  431 (768)
T 3rgz_A          352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS  431 (768)
T ss_dssp             SSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             CCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc
Confidence            9999988888888877 9999999999999888887777  889999999999999899999999999999999999999


Q ss_pred             CCccccccCCCCccEEEccCCcCCCCCCCCCC-CCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccc
Q 003888          409 GPIPVGFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWV  487 (788)
Q Consensus       409 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  487 (788)
                      +..|..+..+++|++|++++|.+.+..|..+. +++|+.|++++|.+.+.+|.. +..+++|++|++++|++++.+|.++
T Consensus       432 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p~~~  510 (768)
T 3rgz_A          432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGEIPKWI  510 (768)
T ss_dssp             SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred             CcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH-HhcCCCCCEEEccCCccCCcCChHH
Confidence            99999999999999999999999988887665 789999999999998888876 9999999999999999999999999


Q ss_pred             cCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCC------------CCCCccc
Q 003888          488 DGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSY------------SLKPFET  555 (788)
Q Consensus       488 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~  555 (788)
                      ..+++|++|++++|++++.+|..+..+++|+.|++++|++.+.+|..+.............            .......
T Consensus       511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (768)
T 3rgz_A          511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA  590 (768)
T ss_dssp             GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSS
T ss_pred             hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccc
Confidence            9999999999999999999999999999999999999999999998765532111100000            0000000


Q ss_pred             --ccccccccchhhhcccc--ceeeeeccce--eeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCc
Q 003888          556 --SLVMDSMMIPAEKQIHE--NFEFTTKNIA--YIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTG  629 (788)
Q Consensus       556 --~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  629 (788)
                        ..............+..  ......+...  .......+++|+.|||++|++++.+|..++++++|+.|+|++|++++
T Consensus       591 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g  670 (768)
T 3rgz_A          591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG  670 (768)
T ss_dssp             EEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred             ccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC
Confidence              00000000000000000  0000000000  00111336789999999999999999999999999999999999999


Q ss_pred             cCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCCcccccCCCCccccCCCCCCCCCCCCCCC
Q 003888          630 LIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPICR  709 (788)
Q Consensus       630 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~gn~~~c~~~l~~c~  709 (788)
                      .+|..|+++++|++|||++|++++.+|..+..+++|++|++++|+++|.+|.. .++.++...++.|||.+|+.|+..|.
T Consensus       671 ~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~l~~C~  749 (768)
T 3rgz_A          671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRCD  749 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTTSCCCC
T ss_pred             CCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCCCCcCCC
Confidence            99999999999999999999999999999999999999999999999999985 78999999999999999999988887


Q ss_pred             CCCCC
Q 003888          710 SPATM  714 (788)
Q Consensus       710 ~~~~~  714 (788)
                      .....
T Consensus       750 ~~~~~  754 (768)
T 3rgz_A          750 PSNAD  754 (768)
T ss_dssp             SCC--
T ss_pred             CCccC
Confidence            55443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.6e-67  Score=617.90  Aligned_cols=593  Identities=29%  Similarity=0.395  Sum_probs=451.7

Q ss_pred             CCCCCCCccEEEcccCCcccccchhH--HHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCC
Q 003888           14 GFPHFKSLDHLDMVFARTALNTSFLQ--IIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLP   91 (788)
Q Consensus        14 ~l~~~~~L~~L~L~~~~~~~~~~~~~--~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~   91 (788)
                      .++++++|++|+|  ++|.+++.+|.  .+. ++++|++|++++|.+.   +.++...+.++++|++|+|++|.+++..|
T Consensus        95 ~~~~l~~L~~L~L--s~n~l~~~~~~~~~l~-~l~~L~~L~Ls~n~l~---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  168 (768)
T 3rgz_A           95 GFKCSASLTSLDL--SRNSLSGPVTTLTSLG-SCSGLKFLNVSSNTLD---FPGKVSGGLKLNSLEVLDLSANSISGANV  168 (768)
T ss_dssp             CCCCCTTCCEEEC--CSSEEEEEGGGGGGGG-GCTTCCEEECCSSEEE---CCSSCCSCCCCTTCSEEECCSSCCEEETH
T ss_pred             hhccCCCCCEEEC--CCCcCCCcCCChHHHh-CCCCCCEEECcCCccC---CcCCHHHhccCCCCCEEECCCCccCCcCC
Confidence            5777788888888  78887777776  777 7888888888887775   55555334677888888888888777666


Q ss_pred             hh---hcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCccccccccccc
Q 003888           92 WC---LANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESH  168 (788)
Q Consensus        92 ~~---l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  168 (788)
                      ..   +.++++|++|++++|.+++.+|   +.++++|++|++++|.+.+.++.  ++++++|++|++++|.+.+..+..+
T Consensus       169 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l  243 (768)
T 3rgz_A          169 VGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAI  243 (768)
T ss_dssp             HHHHHTTCCTTCCEEECCSSEEESCCB---CTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHT
T ss_pred             hhhhhhccCCCCCEEECCCCcccccCC---cccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHH
Confidence            65   6777888888888887774433   36777888888888877765553  7777888888888887765444332


Q ss_pred             cCCCCcccccEEEccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCC
Q 003888          169 SLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSH  248 (788)
Q Consensus       169 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~  248 (788)
                         ....+|++|++ .++.+.+.+|..  .+++|++|++++|.+.+.+|..++..+++|++|++++|.+++..+..+..+
T Consensus       244 ---~~l~~L~~L~L-s~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l  317 (768)
T 3rgz_A          244 ---STCTELKLLNI-SSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC  317 (768)
T ss_dssp             ---TTCSSCCEEEC-CSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGC
T ss_pred             ---hcCCCCCEEEC-CCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcC
Confidence               23346777887 666666666654  677788888888877777777765445778888888888777777777778


Q ss_pred             CCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCC-CCCEEEcccCcCCCccchHHHh-cCCCCC
Q 003888          249 RWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMN-FLQILDLSNNQLTGEIPEHLAV-SCVNLE  326 (788)
Q Consensus       249 ~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~l~~n~i~~~i~~~~~~-~l~~L~  326 (788)
                      ++|++|++++|.+++.+|...+..+++|++|++++|.+++.+|..+.+++ +|++|++++|.+++.+|..+.. .+++|+
T Consensus       318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~  397 (768)
T 3rgz_A          318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ  397 (768)
T ss_dssp             TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred             CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCcc
Confidence            88888888888877777776555577888888888877777777777776 7888888888777666666542 156788


Q ss_pred             EEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCc
Q 003888          327 FLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENH  406 (788)
Q Consensus       327 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~  406 (788)
                      +|++++|.+++..+..+.++++|++|++++|.+++..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus       398 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~  477 (768)
T 3rgz_A          398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND  477 (768)
T ss_dssp             EEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred             EEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc
Confidence            88888888777777777777888888888888777777777788888888888888877777777778888888888888


Q ss_pred             ccCCccccccCCCCccEEEccCCcCCCCCCCCCC-CCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCc
Q 003888          407 LEGPIPVGFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPN  485 (788)
Q Consensus       407 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  485 (788)
                      +.+..|..+..+++|++|++++|++++..|..+. +++|+.|++++|.+.+.+|.. +..+++|+.|++++|.+++.+|.
T Consensus       478 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~  556 (768)
T 3rgz_A          478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPA  556 (768)
T ss_dssp             CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGGCTTCCEEECCSSEEESBCCG
T ss_pred             ccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCCCEEECCCCccCCcCCh
Confidence            8777777777788888888888887777776554 677888888888877777765 77778888888888877777776


Q ss_pred             cccCCCCCCE----------------------------------------------EEccCCcCccccCcccCCCCCCCE
Q 003888          486 WVDGLSQLSH----------------------------------------------LILGHNNLEGEVPVQLCELNQLQL  519 (788)
Q Consensus       486 ~~~~l~~L~~----------------------------------------------L~L~~n~l~~~~~~~l~~l~~L~~  519 (788)
                      .+.....+..                                              +++..|.+.+..|..+..+++|+.
T Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~  636 (768)
T 3rgz_A          557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF  636 (768)
T ss_dssp             GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCE
T ss_pred             HHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccE
Confidence            6544333222                                              223335556666777888899999


Q ss_pred             EEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECC
Q 003888          520 LDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLS  599 (788)
Q Consensus       520 L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls  599 (788)
                      |++++|++++.+|..+..                                                    ++.|+.|+|+
T Consensus       637 LdLs~N~l~g~ip~~l~~----------------------------------------------------l~~L~~L~Ls  664 (768)
T 3rgz_A          637 LDMSYNMLSGYIPKEIGS----------------------------------------------------MPYLFILNLG  664 (768)
T ss_dssp             EECCSSCCBSCCCGGGGG----------------------------------------------------CTTCCEEECC
T ss_pred             EECcCCcccccCCHHHhc----------------------------------------------------cccCCEEeCc
Confidence            999999999999887766                                                    4489999999


Q ss_pred             CCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcc
Q 003888          600 CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSG  677 (788)
Q Consensus       600 ~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~  677 (788)
                      +|++++.+|..++++++|+.|||++|++++.+|..++.+++|++||+++|+++|.+|.. ..+.++....+.+|+--|
T Consensus       665 ~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lc  741 (768)
T 3rgz_A          665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLC  741 (768)
T ss_dssp             SSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEE
T ss_pred             CCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhc
Confidence            99999999999999999999999999999999999999999999999999999999975 344555556677886444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=7.8e-62  Score=565.39  Aligned_cols=595  Identities=21%  Similarity=0.262  Sum_probs=323.8

Q ss_pred             CCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCC
Q 003888           46 PSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSI  125 (788)
Q Consensus        46 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L  125 (788)
                      +++++|++++|.+    ..+++.+|.++++|++|+|++|.+++..|.+|+++++|++|++++|.++ .+|...|+++++|
T Consensus        25 ~~l~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L   99 (680)
T 1ziw_A           25 TNITVLNLTHNQL----RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNL   99 (680)
T ss_dssp             TTCSEEECCSSCC----CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred             CCCcEEECCCCCC----CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCC
Confidence            4556666666655    3344445555666666666666655555555566666666666666555 4554445556666


Q ss_pred             CEEECcCccccccCCccccccCCCCcEEEccCccccccccccccCCCCcccccEEEccCCCCCCCCcCccccCCCCCCEE
Q 003888          126 EELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDV  205 (788)
Q Consensus       126 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  205 (788)
                      ++|++++|.+.+ ++...++++++|++|++++|.+.+.                            .+..+..+++|++|
T Consensus       100 ~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~----------------------------~~~~~~~l~~L~~L  150 (680)
T 1ziw_A          100 TELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSST----------------------------KLGTQVQLENLQEL  150 (680)
T ss_dssp             SEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCC----------------------------CCCSSSCCTTCCEE
T ss_pred             CEEECCCCccCc-cChhHccccCCCCEEECCCCccccc----------------------------CchhhcccccCCEE
Confidence            666666665542 2323455555566655555544321                            12233445555555


Q ss_pred             EcCCCcCCCCCchhHh-hcCCCCCEEEcCCCcccccCccCcCCCCCccEEEcccCcCcccCChhhhh--cCCCCcEEEcc
Q 003888          206 RLSHVNMDGEFPNWLL-ENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGD--ILPSLISFNIS  282 (788)
Q Consensus       206 ~l~~~~~~~~~~~~~~-~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~--~l~~L~~L~L~  282 (788)
                      ++++|.+.+..+..+. ..+++|++|++++|.+++..+..+..+++|+.++++++.+.+.....+..  ..++|+.|+++
T Consensus       151 ~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~  230 (680)
T 1ziw_A          151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS  230 (680)
T ss_dssp             ECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECT
T ss_pred             EccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEcc
Confidence            5555555544433321 13455666666666655555555555556666666555544222111110  12456666666


Q ss_pred             cCcCCCCCcccccCCCC--CCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCC
Q 003888          283 MNALDSSIPSSFGNMNF--LQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLE  360 (788)
Q Consensus       283 ~n~~~~~~~~~~~~l~~--L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  360 (788)
                      +|.+.+..+..|.+++.  |++|++++|.++ .++...+..+++|++|++++|++++..+..+.++++|++|++++|...
T Consensus       231 ~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~  309 (680)
T 1ziw_A          231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK  309 (680)
T ss_dssp             TSCCCEECTTTTGGGGGSCCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCC
T ss_pred             CCcccccChhHhhccCcCCCCEEECCCCCcC-ccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhh
Confidence            66666555555555533  666666666665 333222334566666666666666655555666666666666554332


Q ss_pred             C-----cCC----ccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCC--ccccccC--CCCccEEEcc
Q 003888          361 G-----EIP----QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGP--IPVGFCQ--LYSLQILDIS  427 (788)
Q Consensus       361 ~-----~~~----~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~--l~~L~~L~l~  427 (788)
                      +     .+|    ..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+...  ....|..  .++|+.|+++
T Consensus       310 ~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~  389 (680)
T 1ziw_A          310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT  389 (680)
T ss_dssp             C------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECT
T ss_pred             cccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECC
Confidence            1     111    2455566666666666666655555566666666666666653211  1112221  2456666666


Q ss_pred             CCcCCCCCCCCCC-CCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCc--
Q 003888          428 DNNISGSLPSCFH-PLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLE--  504 (788)
Q Consensus       428 ~n~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--  504 (788)
                      +|++++..+..+. +++|+.|++++|.+.+.++...|.++++|++|++++|++.+..+..+..+++|+.|++++|.+.  
T Consensus       390 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  469 (680)
T 1ziw_A          390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV  469 (680)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCT
T ss_pred             CCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccc
Confidence            6666655554443 5566666666666655555555666666666666666666666666666666666666666665  


Q ss_pred             cccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceee
Q 003888          505 GEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYI  584 (788)
Q Consensus       505 ~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  584 (788)
                      +..|..+..+++|+.|++++|++++..+..+..                                               
T Consensus       470 ~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~-----------------------------------------------  502 (680)
T 1ziw_A          470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEG-----------------------------------------------  502 (680)
T ss_dssp             TCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------------------------------------------
T ss_pred             ccCCcccccCCCCCEEECCCCCCCcCChhhhcc-----------------------------------------------
Confidence            345566666666666666666666555554444                                               


Q ss_pred             ecccccccccEEECCCCcccccCc--------ccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCC
Q 003888          585 YQGKVLSLLSGLDLSCNKLIGHIP--------PQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP  656 (788)
Q Consensus       585 ~~~~~l~~L~~L~Ls~n~l~~~~~--------~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  656 (788)
                           +++|+.|++++|++++..+        ..|.++++|++|+|++|+++.+.+..|.++++|++|++++|++++..+
T Consensus       503 -----l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~  577 (680)
T 1ziw_A          503 -----LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA  577 (680)
T ss_dssp             -----CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             -----ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCH
Confidence                 2356666666666654321        125666666666666666665555566666666666666666665555


Q ss_pred             ccccCCCCCCEEEccCCcCcccCCCccc-ccCCCCccccCCCCCCCCCCC-C--------------------CCCCCCCC
Q 003888          657 HQLVELKTLAVFSVAYNNLSGEIPEWTA-QFATFNESSYEGNTFLCGLPL-P--------------------ICRSPATM  714 (788)
Q Consensus       657 ~~l~~l~~L~~L~l~~N~l~~~~p~~~~-~~~~~~~~~~~gn~~~c~~~l-~--------------------~c~~~~~~  714 (788)
                      ..|..+++|+.|++++|++++..|..+. .+.++..+++.||||.|+|+. .                    .|..|...
T Consensus       578 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~  657 (680)
T 1ziw_A          578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHY  657 (680)
T ss_dssp             TTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC-------------------
T ss_pred             hHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHhcCcccccccCCcEECCchHH
Confidence            5566666666666666666666555444 456666666666666666653 1                    46666666


Q ss_pred             CcccCCCCCCCCc
Q 003888          715 SEASIGNERDDNL  727 (788)
Q Consensus       715 ~~~~~~~~~~~~~  727 (788)
                      .|..+...+.+.+
T Consensus       658 ~g~~l~~~~~~~~  670 (680)
T 1ziw_A          658 HGFPVRLFDTSSC  670 (680)
T ss_dssp             -------------
T ss_pred             CCCcccccChhhc
Confidence            6665555555444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=8.5e-59  Score=539.83  Aligned_cols=622  Identities=23%  Similarity=0.232  Sum_probs=412.3

Q ss_pred             eecCCCCCCCCCccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCc
Q 003888            9 LVRGQGFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRG   88 (788)
Q Consensus         9 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~   88 (788)
                      .+|. .+.  +++++|+|  ++|.+++..+..+. ++++|++|++++|.+.    .+++.+|+++++|++|+|++|.++.
T Consensus        18 ~ip~-~~~--~~l~~L~L--s~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~   87 (680)
T 1ziw_A           18 QVPD-DLP--TNITVLNL--THNQLRRLPAANFT-RYSQLTSLDVGFNTIS----KLEPELCQKLPMLKVLNLQHNELSQ   87 (680)
T ss_dssp             SCCS-CSC--TTCSEEEC--CSSCCCCCCGGGGG-GGTTCSEEECCSSCCC----CCCTTHHHHCTTCCEEECCSSCCCC
T ss_pred             cccc-ccC--CCCcEEEC--CCCCCCCcCHHHHh-CCCcCcEEECCCCccC----ccCHHHHhcccCcCEEECCCCccCc
Confidence            4674 343  79999999  99999988778898 9999999999999994    4555589999999999999999997


Q ss_pred             CCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCccccccccccc
Q 003888           89 SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESH  168 (788)
Q Consensus        89 ~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  168 (788)
                      ..+.+|+++++|++|++++|.++ .++...++++++|++|++++|.+.+..+ ..++++++|++|++++|.+.+..+...
T Consensus        88 l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~  165 (680)
T 1ziw_A           88 LSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKL-GTQVQLENLQELLLSNNKIQALKSEEL  165 (680)
T ss_dssp             CCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCC-CSSSCCTTCCEEECCSSCCCCBCHHHH
T ss_pred             cChhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccCc-hhhcccccCCEEEccCCcccccCHHHh
Confidence            66668999999999999999998 6775589999999999999999986544 578899999999999998876433321


Q ss_pred             cCCCCcccccEEEccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhHh--hcCCCCCEEEcCCCcccccCccCcC
Q 003888          169 SLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLL--ENNTKLRQLYLVNDSLTGPFRLPIH  246 (788)
Q Consensus       169 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~~L~L~~~~l~~~~~~~l~  246 (788)
                      . .....+|+.|++ .++.+.+..|..+..+++|+.++++++.+.+.....+.  -..++|++|++++|.+++..+..+.
T Consensus       166 ~-~~~~~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~  243 (680)
T 1ziw_A          166 D-IFANSSLKKLEL-SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL  243 (680)
T ss_dssp             G-GGTTCEESEEEC-TTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred             h-ccccccccEEEC-CCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence            1 112235677777 55555555666666666777777766655432222211  1235666666666666666555555


Q ss_pred             CCCC--ccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCC
Q 003888          247 SHRW--LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVN  324 (788)
Q Consensus       247 ~~~~--L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~  324 (788)
                      .++.  |++|++++|.+++..+..+. .+++|++|++++|.+.+..+..|.++++|++|++++|...+.++..       
T Consensus       244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-------  315 (680)
T 1ziw_A          244 GLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA-------  315 (680)
T ss_dssp             GGGGSCCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------------
T ss_pred             ccCcCCCCEEECCCCCcCccCccccc-CcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccc-------
Confidence            5543  66666666666543333332 3566666666666666655666666666666666655433211100       


Q ss_pred             CCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCC--CcccccC--CCCCCEE
Q 003888          325 LEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGK--IPRWLGN--LTGLKHI  400 (788)
Q Consensus       325 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~--~~~~~~~--l~~L~~L  400 (788)
                               .+..+....+..+++|++|++++|.+++..+..|.++++|++|++++|.+...  ....|..  .++|+.|
T Consensus       316 ---------~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L  386 (680)
T 1ziw_A          316 ---------SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL  386 (680)
T ss_dssp             ----------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEE
T ss_pred             ---------cccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceE
Confidence                     00111112333444555555555555444444444555555555554443211  1111211  1345555


Q ss_pred             eCCCCcccCCccccccCCCCccEEEccCCcCCCCCC-CCC-CCCCccEEEccCcccccccCcccccCCCCCcEEEccCCc
Q 003888          401 IMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLP-SCF-HPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNR  478 (788)
Q Consensus       401 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~  478 (788)
                      ++++|.+.+..+.+|..+++|++|++++|.+.+..+ ..+ .+++|+.|++++|.+.+ ++...|..+++|+.|++++|.
T Consensus       387 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~L~~L~l~~n~  465 (680)
T 1ziw_A          387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ-LTRNSFALVPSLQRLMLRRVA  465 (680)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEE-CCTTTTTTCTTCCEEECTTSC
T ss_pred             ECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcce-eChhhhhcCcccccchhcccc
Confidence            555555554444455555555555555555543222 222 24455555555555433 333347888999999999998


Q ss_pred             CC--CCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccc
Q 003888          479 LN--GSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETS  556 (788)
Q Consensus       479 l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (788)
                      +.  +..|..+..+++|++|++++|++++..+..|.++++|+.|++++|++.+..+..+.....                
T Consensus       466 l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~----------------  529 (680)
T 1ziw_A          466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI----------------  529 (680)
T ss_dssp             CBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCC----------------
T ss_pred             ccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcc----------------
Confidence            86  467888999999999999999999888888999999999999999987543332221100                


Q ss_pred             cccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCcccc
Q 003888          557 LVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFS  636 (788)
Q Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  636 (788)
                                                  .....+++|+.|+|++|+++.+.+..|.++++|+.|+|++|+++++.+..|.
T Consensus       530 ----------------------------~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~  581 (680)
T 1ziw_A          530 ----------------------------YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN  581 (680)
T ss_dssp             ----------------------------CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             ----------------------------hhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhC
Confidence                                        0001256899999999999966666799999999999999999999888999


Q ss_pred             CCCCCCEEECcCCcccccCCcccc-CCCCCCEEEccCCcCcccCC--CcccccCCCCccccCC--CCCCCCCCCC
Q 003888          637 NLKHIESLDLSYNKLNGKIPHQLV-ELKTLAVFSVAYNNLSGEIP--EWTAQFATFNESSYEG--NTFLCGLPLP  706 (788)
Q Consensus       637 ~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~l~~N~l~~~~p--~~~~~~~~~~~~~~~g--n~~~c~~~l~  706 (788)
                      ++++|++|++++|++++..|..+. .+++|+.+++++|++.|.++  .|+..|..-....+.+  ....|..|..
T Consensus       582 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~  656 (680)
T 1ziw_A          582 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPH  656 (680)
T ss_dssp             TCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC------------------
T ss_pred             CCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHhcCcccccccCCcEECCchH
Confidence            999999999999999988887777 78999999999999999876  5666654333333322  4567877643

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-56  Score=529.80  Aligned_cols=584  Identities=21%  Similarity=0.165  Sum_probs=374.5

Q ss_pred             EEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCC-ChhhcCCCCCC
Q 003888           23 HLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSL-PWCLANMTSLR  101 (788)
Q Consensus        23 ~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~  101 (788)
                      ..+.  +++.++.. |. +   .+++++|||++|.+    ..+.+.+|.++++|++|+|++|...+.+ |.+|.++++|+
T Consensus         8 ~~dc--s~~~L~~v-P~-l---p~~l~~LdLs~N~i----~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~   76 (844)
T 3j0a_A            8 IAFY--RFCNLTQV-PQ-V---LNTTERLLLSFNYI----RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLR   76 (844)
T ss_dssp             EEEE--SCCCSSCC-CS-S---CTTCCEEEEESCCC----CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCC
T ss_pred             EEEc--cCCCCCCC-CC-C---CCCcCEEECCCCcC----CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCC
Confidence            3445  77777744 44 3   36899999999998    4555558899999999999999655444 78899999999


Q ss_pred             EEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCc-cccccCCCCcEEEccCccccccccccccCCCCcccccEE
Q 003888          102 ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISL-EPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQAL  180 (788)
Q Consensus       102 ~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L  180 (788)
                      +|+|++|.+.+..|. .++++++|++|++++|.+.+.++. ..++++++|++|++++|.+.+.                 
T Consensus        77 ~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~-----------------  138 (844)
T 3j0a_A           77 ILDLGSSKIYFLHPD-AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL-----------------  138 (844)
T ss_dssp             EEECTTCCCCEECTT-SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC-----------------
T ss_pred             EEECCCCcCcccCHh-HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc-----------------
Confidence            999999999844455 899999999999999988864442 3478889999999888876431                 


Q ss_pred             EccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcC--CCCCEEEcCCCcccccCccCcCCCCC------cc
Q 003888          181 SLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENN--TKLRQLYLVNDSLTGPFRLPIHSHRW------LR  252 (788)
Q Consensus       181 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l--~~L~~L~L~~~~l~~~~~~~l~~~~~------L~  252 (788)
                                ..+..+.++++|++|++++|.+.+..+..+ ..+  ++|+.|++++|.+.+..+..+..+.+      |+
T Consensus       139 ----------~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l-~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~  207 (844)
T 3j0a_A          139 ----------YLHPSFGKLNSLKSIDFSSNQIFLVCEHEL-EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE  207 (844)
T ss_dssp             ----------CCCGGGGTCSSCCEEEEESSCCCCCCSGGG-HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBS
T ss_pred             ----------ccchhHhhCCCCCEEECCCCcCCeeCHHHc-ccccCCccceEECCCCccccccccchhhcCCccccCcee
Confidence                      123467788899999999998888777665 344  78888899888888877766666554      88


Q ss_pred             EEEcccCcCcccCChhhhhcC--CCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhc--CCCCCEE
Q 003888          253 FLDVSNNNFQGHIPVEIGDIL--PSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVS--CVNLEFL  328 (788)
Q Consensus       253 ~L~L~~n~i~~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~--l~~L~~L  328 (788)
                      .|++++|.+++.++..+....  .+++.+.++.+.+...               +..+.+. ......+.+  .++|++|
T Consensus       208 ~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~---------------~~~~~l~-~~~~~~f~~l~~~~L~~L  271 (844)
T 3j0a_A          208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG---------------FGFHNIK-DPDQNTFAGLARSSVRHL  271 (844)
T ss_dssp             EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS---------------SSCSSST-TGGGTTTTTTTTSCCCEE
T ss_pred             EEecCCCcCchhHHHHHHhhcCcccccceeccccccccc---------------ccccccC-CCChhhhhccccCCccEE
Confidence            888888877766666655432  3566666654332210               1122232 122222222  3678888


Q ss_pred             EccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCccc
Q 003888          329 ALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLE  408 (788)
Q Consensus       329 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~  408 (788)
                      ++++|.+.+..+..+..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+.
T Consensus       272 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~  351 (844)
T 3j0a_A          272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA  351 (844)
T ss_dssp             ECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCC
T ss_pred             ECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCC
Confidence            88888888888888888888999999999888777888888889999999999888777888888889999999998888


Q ss_pred             CCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCC-ccc
Q 003888          409 GPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIP-NWV  487 (788)
Q Consensus       409 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~  487 (788)
                      ...+..|..+++|++|++++|.+++...    .++|+.+++++|.+. .++..    ..+++.|++++|++++... ..+
T Consensus       352 ~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~  422 (844)
T 3j0a_A          352 IIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFL  422 (844)
T ss_dssp             CCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHH
T ss_pred             ccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCcc-ccccc----ccccceeecccCccccCchhhhh
Confidence            7777778888899999999888764322    445566666666553 23221    2456666666666654321 123


Q ss_pred             cCCCCCCEEEccCCcCccccCc-ccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchh
Q 003888          488 DGLSQLSHLILGHNNLEGEVPV-QLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPA  566 (788)
Q Consensus       488 ~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  566 (788)
                      ..+++|++|++++|++++..+. .+..+++|+.|++++|.+....+.......                           
T Consensus       423 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~---------------------------  475 (844)
T 3j0a_A          423 LRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV---------------------------  475 (844)
T ss_dssp             TTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSC---------------------------
T ss_pred             hcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhh---------------------------
Confidence            4556666666666666543322 234455666666666655422211100000                           


Q ss_pred             hhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEEC
Q 003888          567 EKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDL  646 (788)
Q Consensus       567 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  646 (788)
                                          ...+++|+.|+|++|++++..|..|.++++|+.|+|++|+++++.+..+.  ++|+.|++
T Consensus       476 --------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~L  533 (844)
T 3j0a_A          476 --------------------FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDI  533 (844)
T ss_dssp             --------------------SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEE
T ss_pred             --------------------hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEEC
Confidence                                00123455555555555555555555555555555555555554444443  45555555


Q ss_pred             cCCcccccCCccccCCCCCCEEEccCCcCcccCCCcccccCCCCccccCCCCCCCCCCC-CCCCCCCCCCcccCCCCCCC
Q 003888          647 SYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL-PICRSPATMSEASIGNERDD  725 (788)
Q Consensus       647 s~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~gn~~~c~~~l-~~c~~~~~~~~~~~~~~~~~  725 (788)
                      ++|++++..|..+   ++|+.+++++|++.|.++-     ..+..+...++..+|+.+. ..|..|....+.++.....+
T Consensus       534 s~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~-----~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~  605 (844)
T 3j0a_A          534 SRNQLLAPNPDVF---VSLSVLDITHNKFICECEL-----STFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTE  605 (844)
T ss_dssp             EEECCCCCCSCCC---SSCCEEEEEEECCCCSSSC-----CSHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTTTCCCC
T ss_pred             CCCcCCCCChhHh---CCcCEEEecCCCccccccc-----HHHHHHHHhcCcccccccccCccCCchhhCCCccccCccc
Confidence            5555555444333   2445555555555543321     0111111112222332221 26888988888777666665


Q ss_pred             Ccc
Q 003888          726 NLI  728 (788)
Q Consensus       726 ~~~  728 (788)
                      .|.
T Consensus       606 ~C~  608 (844)
T 3j0a_A          606 GCD  608 (844)
T ss_dssp             CC-
T ss_pred             cCC
Confidence            554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3.2e-55  Score=502.85  Aligned_cols=559  Identities=19%  Similarity=0.217  Sum_probs=340.3

Q ss_pred             EEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCCCCCE
Q 003888           23 HLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRI  102 (788)
Q Consensus        23 ~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  102 (788)
                      .++.  ++..++ .+|..+.   +++++|++++|.+    ..+++.+|+++++|++|+|++|++++..|.+|+++++|++
T Consensus        16 ~~~c--~~~~l~-~iP~~l~---~~l~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   85 (606)
T 3t6q_A           16 TYNC--ENLGLN-EIPGTLP---NSTECLEFSFNVL----PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDT   85 (606)
T ss_dssp             EEEC--TTSCCS-SCCTTSC---TTCCEEECTTCCC----SEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             eEEC--CCCCcc-cCcCCCC---CcCcEEEccCCcc----CcCChhHhccCccceEEECCCCccceeChhhccCccccCe
Confidence            4555  666665 4565555   4788888888888    4555557888888888888888888878888888888888


Q ss_pred             EECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCccccccccccccCCCCcccccEEEc
Q 003888          103 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSL  182 (788)
Q Consensus       103 L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l  182 (788)
                      |++++|.+++..|. .++++++|++|++++|.+++. +...++++++|++|++++|.+.+.                   
T Consensus        86 L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~l-~~~~~~~l~~L~~L~L~~n~l~~~-------------------  144 (606)
T 3t6q_A           86 LVLTANPLIFMAET-ALSGPKALKHLFFIQTGISSI-DFIPLHNQKTLESLYLGSNHISSI-------------------  144 (606)
T ss_dssp             EECTTCCCSEECTT-TTSSCTTCCEEECTTSCCSCG-GGSCCTTCTTCCEEECCSSCCCCC-------------------
T ss_pred             eeCCCCcccccChh-hhcccccccEeeccccCcccC-CcchhccCCcccEEECCCCccccc-------------------
Confidence            88888888744444 788888888888888888743 223577788888888888766431                   


Q ss_pred             cCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCC--EEEcCCCcccccCccCcCCCCCccEEEcccCc
Q 003888          183 SSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLR--QLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNN  260 (788)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~--~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~  260 (788)
                              ..|... .+++|++|++++|.+.+..+..+ +.+++|+  .|++++|.+++..+..+.. .+|+.|++++|.
T Consensus       145 --------~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~  213 (606)
T 3t6q_A          145 --------KLPKGF-PTEKLKVLDFQNNAIHYLSKEDM-SSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ  213 (606)
T ss_dssp             --------CCCTTC-CCTTCCEEECCSSCCCEECHHHH-HTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS
T ss_pred             --------Cccccc-CCcccCEEEcccCcccccChhhh-hhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch
Confidence                    112222 26777888888877776555443 5677777  6777777777655554433 456666666664


Q ss_pred             CcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCC--CCCEEEccCccCCCc
Q 003888          261 FQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCV--NLEFLALSNNNLKGH  338 (788)
Q Consensus       261 i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~--~L~~L~L~~n~i~~~  338 (788)
                      .   ++..+ ..+.+++...+....+.           .+...         .++...+..+.  +|++|++++|.++++
T Consensus       214 ~---~~~~~-~~l~~~~l~~l~~~~~~-----------~~~~~---------~i~~~~~~~l~~~~L~~L~l~~n~l~~~  269 (606)
T 3t6q_A          214 N---LLVIF-KGLKNSTIQSLWLGTFE-----------DMDDE---------DISPAVFEGLCEMSVESINLQKHYFFNI  269 (606)
T ss_dssp             C---HHHHH-HHTTTCEEEEEECCCCT-----------TSCCC---------CCCGGGGGGGGGSEEEEEECTTCCCSSC
T ss_pred             h---HHHHh-hhccccchhheechhhc-----------ccccc---------ccChhHhchhhcCceeEEEeecCccCcc
Confidence            1   12211 11333333322211111           11111         11122222222  567777777777776


Q ss_pred             CcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccc-cccC
Q 003888          339 MFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPV-GFCQ  417 (788)
Q Consensus       339 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~  417 (788)
                      .+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+. .+..
T Consensus       270 ~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  348 (606)
T 3t6q_A          270 SSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN  348 (606)
T ss_dssp             CTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred             CHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence            6666667777777777777776 5666677777777777777777665566677777777777777766644433 3666


Q ss_pred             CCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEE
Q 003888          418 LYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLI  497 (788)
Q Consensus       418 l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  497 (788)
                      +++|++|++++|.+.+...                     .+ ..+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus       349 l~~L~~L~l~~n~l~~~~~---------------------~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  406 (606)
T 3t6q_A          349 LENLRELDLSHDDIETSDC---------------------CN-LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD  406 (606)
T ss_dssp             CTTCCEEECCSSCCCEEEE---------------------ST-TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEE
T ss_pred             cCcCCEEECCCCccccccC---------------------cc-hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEE
Confidence            7777777777776653320                     01 1144555555555555555555555555555555555


Q ss_pred             ccCCcCccccCc-ccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceee
Q 003888          498 LGHNNLEGEVPV-QLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEF  576 (788)
Q Consensus       498 L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  576 (788)
                      +++|++++..+. .+..+++|+.|++++|.+.+..|..+..                                       
T Consensus       407 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------------------------------  447 (606)
T 3t6q_A          407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG---------------------------------------  447 (606)
T ss_dssp             CTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT---------------------------------------
T ss_pred             CCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC---------------------------------------
Confidence            555555544332 2555555555555555555444444433                                       


Q ss_pred             eeccceeeecccccccccEEECCCCccccc---CcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccc
Q 003888          577 TTKNIAYIYQGKVLSLLSGLDLSCNKLIGH---IPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG  653 (788)
Q Consensus       577 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  653 (788)
                                   +++|++|++++|++.+.   .+..+..+++|++|++++|++++..|..|..+++|++|++++|++++
T Consensus       448 -------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  514 (606)
T 3t6q_A          448 -------------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS  514 (606)
T ss_dssp             -------------CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred             -------------CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc
Confidence                         23555555555555441   22345556666666666666665555566666666666666666665


Q ss_pred             cCCccccCCCCCCEEEccCCcCcccCCCcccccCCCCccccCCCCCCCCCCC-------------------CCCCCCCCC
Q 003888          654 KIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL-------------------PICRSPATM  714 (788)
Q Consensus       654 ~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~gn~~~c~~~l-------------------~~c~~~~~~  714 (788)
                      ..|..+..++.| .|++++|++++..|..+..+.+++.+++.|||+.|+|+.                   ..|..|...
T Consensus       515 ~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~~~~~~~~~C~~p~~~  593 (606)
T 3t6q_A          515 SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLL  593 (606)
T ss_dssp             GGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHHHCGGGEECGGGCBEEESGGG
T ss_pred             CChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHHhCcccccCCCCCeeCCchHh
Confidence            555566666666 666666666655555555555566666666666666542                   157777777


Q ss_pred             CcccCCCCC
Q 003888          715 SEASIGNER  723 (788)
Q Consensus       715 ~~~~~~~~~  723 (788)
                      .|..+...+
T Consensus       594 ~g~~l~~~~  602 (606)
T 3t6q_A          594 RGVRLSDVT  602 (606)
T ss_dssp             TTCBGGGCC
T ss_pred             CCCeeeeee
Confidence            777555443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.1e-53  Score=490.13  Aligned_cols=572  Identities=20%  Similarity=0.167  Sum_probs=380.4

Q ss_pred             cEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCCCCC
Q 003888           22 DHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLR  101 (788)
Q Consensus        22 ~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  101 (788)
                      ++++.  +++.++. +|..+.   +++++|++++|.+    ..+++.+|.++++|++|++++|.+++..|.+|.++++|+
T Consensus        14 ~~~~c--~~~~l~~-ip~~~~---~~l~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~   83 (606)
T 3vq2_A           14 ITYQC--MDQKLSK-VPDDIP---SSTKNIDLSFNPL----KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS   83 (606)
T ss_dssp             TEEEC--TTSCCSS-CCTTSC---TTCCEEECTTSCC----CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred             CceEc--cCCCccc-CCCCCC---CCcCEEECCCCCc----CEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcC
Confidence            45566  7776663 444333   6788888888887    445555777888888888888888777777788888888


Q ss_pred             EEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCccccccccccccCCCCcccccEEE
Q 003888          102 ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALS  181 (788)
Q Consensus       102 ~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~  181 (788)
                      +|++++|.+++..|. .++++++|++|++++|.+.+..+ ..++++++|++|++++|.+.+                   
T Consensus        84 ~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~-------------------  142 (606)
T 3vq2_A           84 NLILTGNPIQSFSPG-SFSGLTSLENLVAVETKLASLES-FPIGQLITLKKLNVAHNFIHS-------------------  142 (606)
T ss_dssp             EEECTTCCCCCCCTT-SSTTCTTCCEEECTTSCCCCSSS-SCCTTCTTCCEEECCSSCCCC-------------------
T ss_pred             EeECCCCcccccChh-hcCCcccCCEEEccCCccccccc-cccCCCCCCCEEeCCCCcccc-------------------
Confidence            888888888733344 77888888888888887764332 357777778888777776532                   


Q ss_pred             ccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCC----CCEEEcCCCcccccCccCcCCCCCccEEEcc
Q 003888          182 LSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTK----LRQLYLVNDSLTGPFRLPIHSHRWLRFLDVS  257 (788)
Q Consensus       182 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~----L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~  257 (788)
                              ..+|..+..+++|++|++++|.+.+..+..+ +.+++    ++.|++++|.+++..+..+... +|+.|+++
T Consensus       143 --------~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~  212 (606)
T 3vq2_A          143 --------CKLPAYFSNLTNLVHVDLSYNYIQTITVNDL-QFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLR  212 (606)
T ss_dssp             --------CCCCGGGGTCTTCCEEECCSSCCCEECTTTT-HHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEE
T ss_pred             --------eechHhHhhcCCCCEEEccCCcceecChhhh-hhhhccccccceeeccCCCcceeCcccccCc-eeeeeecc
Confidence                    1346677778888888888887776555433 33333    4578888888887666655554 78888888


Q ss_pred             cCcCcccCChhhhhcCCCCcEEEcccCcCCC------CCcccccCCC--CCCEEEc-ccCcCCCccchHHHhcCCCCCEE
Q 003888          258 NNNFQGHIPVEIGDILPSLISFNISMNALDS------SIPSSFGNMN--FLQILDL-SNNQLTGEIPEHLAVSCVNLEFL  328 (788)
Q Consensus       258 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~------~~~~~~~~l~--~L~~L~l-~~n~i~~~i~~~~~~~l~~L~~L  328 (788)
                      +|.+++.........++.++.+++..+.+..      ..+..+.++.  .++.+++ ..+.+.+.+|.  +..+++|+.|
T Consensus       213 ~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L  290 (606)
T 3vq2_A          213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAM  290 (606)
T ss_dssp             SCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEE
T ss_pred             CCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEE
Confidence            8887644444444557788887776544332      1111222222  3445555 55566655555  3457777777


Q ss_pred             EccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCccc
Q 003888          329 ALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLE  408 (788)
Q Consensus       329 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~  408 (788)
                      ++++|.++...  .+..+++|++|++++|.+. .+| .+ .+++|++|++++|...+..  .+..+++|++|++++|.+.
T Consensus       291 ~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~  363 (606)
T 3vq2_A          291 SLAGVSIKYLE--DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALS  363 (606)
T ss_dssp             EEESCCCCCCC--CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEE
T ss_pred             EecCccchhhh--hccccccCCEEEcccccCc-ccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccC
Confidence            77777776543  5667777777777777773 556 34 7777777777777543222  4556777777777777776


Q ss_pred             CCc--cccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCC-c
Q 003888          409 GPI--PVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIP-N  485 (788)
Q Consensus       409 ~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~  485 (788)
                      +..  +..+..+++|++|++++|.+.+                        ++ ..+..+++|+.|++++|++.+..+ .
T Consensus       364 ~~~~~~~~~~~~~~L~~L~L~~n~l~~------------------------~~-~~~~~l~~L~~L~l~~n~l~~~~~~~  418 (606)
T 3vq2_A          364 FSGCCSYSDLGTNSLRHLDLSFNGAII------------------------MS-ANFMGLEELQHLDFQHSTLKRVTEFS  418 (606)
T ss_dssp             EEEECCHHHHCCSCCCEEECCSCSEEE------------------------EC-CCCTTCTTCCEEECTTSEEESTTTTT
T ss_pred             CCcchhhhhccCCcccEeECCCCcccc------------------------ch-hhccCCCCCCeeECCCCccCCccChh
Confidence            542  5666677777777777776542                        22 226778888888888888887766 5


Q ss_pred             cccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCC-CCCCCCcCcccccccCCCCCCCCcccccccccccc
Q 003888          486 WVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHG-PIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMI  564 (788)
Q Consensus       486 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  564 (788)
                      .+..+++|++|++++|.+++..|..+..+++|++|++++|++.+ ..|..+..                           
T Consensus       419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~---------------------------  471 (606)
T 3vq2_A          419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN---------------------------  471 (606)
T ss_dssp             TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT---------------------------
T ss_pred             hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc---------------------------
Confidence            77888889999999888888888888888888888888888876 34555544                           


Q ss_pred             hhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEE
Q 003888          565 PAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESL  644 (788)
Q Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  644 (788)
                                               +++|+.|++++|++++..|..|+.+++|++|++++|++++..|..|+++++|++|
T Consensus       472 -------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  526 (606)
T 3vq2_A          472 -------------------------TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL  526 (606)
T ss_dssp             -------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEE
T ss_pred             -------------------------CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEE
Confidence                                     4478888888888888888888888888888888888888888888888888888


Q ss_pred             ECcCCcccccCCccccCCC-CCCEEEccCCcCcccCCC-cccccCCCCccccCCCCCCCCCCCCCCCCCCCCCcccCCCC
Q 003888          645 DLSYNKLNGKIPHQLVELK-TLAVFSVAYNNLSGEIPE-WTAQFATFNESSYEGNTFLCGLPLPICRSPATMSEASIGNE  722 (788)
Q Consensus       645 ~Ls~N~l~~~~p~~l~~l~-~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~~~gn~~~c~~~l~~c~~~~~~~~~~~~~~  722 (788)
                      ++++|+++ .+|..+..++ +|++|++++|++.|..+. |+.+|..-....+.      +.....|..|....+..+..+
T Consensus       527 ~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~~~~~~~------~~~~~~C~~p~~~~~~~l~~~  599 (606)
T 3vq2_A          527 DCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLV------NVEQMTCATPVEMNTSLVLDF  599 (606)
T ss_dssp             ECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTTSSSSBS------SGGGCCCC-------------
T ss_pred             ECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHHcCccccc------CCccceeCCChHhCCCEeeec
Confidence            88888887 5666677776 588888888888876653 22222111000010      111226888888877777666


Q ss_pred             CCCCc
Q 003888          723 RDDNL  727 (788)
Q Consensus       723 ~~~~~  727 (788)
                      +.+.|
T Consensus       600 ~~~~c  604 (606)
T 3vq2_A          600 NNSTC  604 (606)
T ss_dssp             -----
T ss_pred             ccccC
Confidence            65543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.9e-53  Score=503.75  Aligned_cols=515  Identities=19%  Similarity=0.149  Sum_probs=367.6

Q ss_pred             CCCCccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcC
Q 003888           17 HFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLAN   96 (788)
Q Consensus        17 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~   96 (788)
                      -.+++++|+|  ++|.+++..+..+. ++++|++|+|++|...   ..+++.+|+++++|++|+|++|.+++..|.+|++
T Consensus        22 lp~~l~~LdL--s~N~i~~i~~~~~~-~l~~L~~LdLs~n~~~---~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~   95 (844)
T 3j0a_A           22 VLNTTERLLL--SFNYIRTVTASSFP-FLEQLQLLELGSQYTP---LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG   95 (844)
T ss_dssp             SCTTCCEEEE--ESCCCCEECSSSCS-SCCSCSEEEECTTCCC---CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS
T ss_pred             CCCCcCEEEC--CCCcCCccChhHCc-ccccCeEEeCCCCCCc---cccCHHHhcCCCCCCEEECCCCcCcccCHhHccC
Confidence            4579999999  99999988888999 9999999999999765   7786778999999999999999999889999999


Q ss_pred             CCCCCEEECCCCcCcCcCCh-hhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCccccccccccccCCCCcc
Q 003888           97 MTSLRILDVSSNQLTGSISS-SPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNF  175 (788)
Q Consensus        97 l~~L~~L~Ls~n~~~~~i~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~  175 (788)
                      +++|++|+|++|.+++.+|. ..++++++|++|++++|.+.+..+...++++++|++|++++|.+.+.            
T Consensus        96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~------------  163 (844)
T 3j0a_A           96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV------------  163 (844)
T ss_dssp             CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC------------
T ss_pred             CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee------------
Confidence            99999999999999876665 24899999999999999998765556799999999999999987542            


Q ss_pred             cccEEEccCCCCCCCCcCccccCC--CCCCEEEcCCCcCCCCCchhHhhcCC------CCCEEEcCCCcccccCccCcCC
Q 003888          176 QLQALSLSSGYGDGVTFPKFLYHQ--HDLEDVRLSHVNMDGEFPNWLLENNT------KLRQLYLVNDSLTGPFRLPIHS  247 (788)
Q Consensus       176 ~L~~L~l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~l~------~L~~L~L~~~~l~~~~~~~l~~  247 (788)
                                      .+..+..+  ++|+.|++++|.+.+..|..+ ..++      .|+.|++++|.+++..+..+..
T Consensus       164 ----------------~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  226 (844)
T 3j0a_A          164 ----------------CEHELEPLQGKTLSFFSLAANSLYSRVSVDW-GKCMNPFRNMVLEILDVSGNGWTVDITGNFSN  226 (844)
T ss_dssp             ----------------CSGGGHHHHHCSSCCCEECCSBSCCCCCCCC-CSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGG
T ss_pred             ----------------CHHHcccccCCccceEECCCCccccccccch-hhcCCccccCceeEEecCCCcCchhHHHHHHh
Confidence                            23334444  789999999999988777653 3344      3999999999988776665543


Q ss_pred             ---CCCccEEEcccCcCcccC--------Chhhhhc--CCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCcc
Q 003888          248 ---HRWLRFLDVSNNNFQGHI--------PVEIGDI--LPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEI  314 (788)
Q Consensus       248 ---~~~L~~L~L~~n~i~~~~--------~~~~~~~--l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i  314 (788)
                         ...++.+.++.+......        ....+..  .++|+.|++++|.+.+..+..|..+++|++|++++|.++   
T Consensus       227 ~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~---  303 (844)
T 3j0a_A          227 AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN---  303 (844)
T ss_dssp             TSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC---
T ss_pred             hcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCC---
Confidence               357888888754332110        0011111  134555555555555444444555555555555555554   


Q ss_pred             chHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCC
Q 003888          315 PEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNL  394 (788)
Q Consensus       315 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l  394 (788)
                                            +..+..+.++++|++|++++|.+++..+..+..+++|+.|++++|.+....+..|..+
T Consensus       304 ----------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l  361 (844)
T 3j0a_A          304 ----------------------KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL  361 (844)
T ss_dssp             ----------------------EECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSC
T ss_pred             ----------------------CCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence                                  4444444444444444444444444444444444555555555554444444444445


Q ss_pred             CCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEc
Q 003888          395 TGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDL  474 (788)
Q Consensus       395 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L  474 (788)
                      ++|++|++++|.+++.     ..+++|+.|++++|+++.....   ..+++.+++++|.+.+.-....+..+++|+.|++
T Consensus       362 ~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~L  433 (844)
T 3j0a_A          362 EKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILIL  433 (844)
T ss_dssp             CCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEE
T ss_pred             CCCCEEECCCCCCCcc-----cCCCCcchhccCCCCccccccc---ccccceeecccCccccCchhhhhhcCCccceeeC
Confidence            5555555555544421     1144555555555555422111   2345555555555544322223568899999999


Q ss_pred             cCCcCCCCCCc-cccCCCCCCEEEccCCcCc-----cccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCC
Q 003888          475 SYNRLNGSIPN-WVDGLSQLSHLILGHNNLE-----GEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSY  548 (788)
Q Consensus       475 ~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~  548 (788)
                      ++|++++..+. .+..+++|+.|++++|.++     +..+..|.++++|+.|++++|++++..|..|..           
T Consensus       434 s~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----------  502 (844)
T 3j0a_A          434 NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH-----------  502 (844)
T ss_dssp             ESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSS-----------
T ss_pred             CCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccc-----------
Confidence            99999865443 4566899999999999997     344567889999999999999999888887766           


Q ss_pred             CCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCC
Q 003888          549 SLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT  628 (788)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~  628 (788)
                                                               +++|+.|+|++|++++..+..+.  ++|+.|+|++|+++
T Consensus       503 -----------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~  539 (844)
T 3j0a_A          503 -----------------------------------------LTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLL  539 (844)
T ss_dssp             -----------------------------------------CCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCC
T ss_pred             -----------------------------------------hhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCC
Confidence                                                     44899999999999988777776  89999999999999


Q ss_pred             ccCCccccCCCCCCEEECcCCcccccCC
Q 003888          629 GLIPSTFSNLKHIESLDLSYNKLNGKIP  656 (788)
Q Consensus       629 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  656 (788)
                      +..|+.|   .+|+.|++++|++.+..+
T Consensus       540 ~~~~~~~---~~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          540 APNPDVF---VSLSVLDITHNKFICECE  564 (844)
T ss_dssp             CCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred             CCChhHh---CCcCEEEecCCCcccccc
Confidence            9988876   479999999999987654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=7.3e-53  Score=483.32  Aligned_cols=524  Identities=23%  Similarity=0.241  Sum_probs=355.1

Q ss_pred             eecCCCCCCCCCccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCc
Q 003888            9 LVRGQGFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRG   88 (788)
Q Consensus         9 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~   88 (788)
                      .+|. .+.  +++++|+|  ++|.+++..+.++. ++++|++|++++|.+    ..+.+.+|+++++|++|+|++|++++
T Consensus        26 ~iP~-~l~--~~l~~L~L--s~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~n~l~~   95 (606)
T 3t6q_A           26 EIPG-TLP--NSTECLEF--SFNVLPTIQNTTFS-RLINLTFLDLTRCQI----YWIHEDTFQSQHRLDTLVLTANPLIF   95 (606)
T ss_dssp             SCCT-TSC--TTCCEEEC--TTCCCSEECTTTST-TCTTCSEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCSE
T ss_pred             cCcC-CCC--CcCcEEEc--cCCccCcCChhHhc-cCccceEEECCCCcc----ceeChhhccCccccCeeeCCCCcccc
Confidence            4664 344  37999999  99999988888999 999999999999999    45655689999999999999999998


Q ss_pred             CCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCccccccccccc
Q 003888           89 SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESH  168 (788)
Q Consensus        89 ~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  168 (788)
                      ..|.+|+++++|++|++++|.++ .++...++++++|++|++++|.+.+... ..+..+++|++|++++|.+.+.     
T Consensus        96 ~~~~~~~~l~~L~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~-----  168 (606)
T 3t6q_A           96 MAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKL-PKGFPTEKLKVLDFQNNAIHYL-----  168 (606)
T ss_dssp             ECTTTTSSCTTCCEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCCCCC-CTTCCCTTCCEEECCSSCCCEE-----
T ss_pred             cChhhhcccccccEeeccccCcc-cCCcchhccCCcccEEECCCCcccccCc-ccccCCcccCEEEcccCccccc-----
Confidence            88999999999999999999998 6644479999999999999999985322 3455699999999999876532     


Q ss_pred             cCCCCcccccEEEccCCCCCCCCcCccccCCCCCC--EEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcC
Q 003888          169 SLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLE--DVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIH  246 (788)
Q Consensus       169 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~--~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~  246 (788)
                                             .+..+..+++|+  .+++++|.+.+..|..+  ....|++|++++|...   +..+.
T Consensus       169 -----------------------~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~~~~~---~~~~~  220 (606)
T 3t6q_A          169 -----------------------SKEDMSSLQQATNLSLNLNGNDIAGIEPGAF--DSAVFQSLNFGGTQNL---LVIFK  220 (606)
T ss_dssp             -----------------------CHHHHHTTTTCCSEEEECTTCCCCEECTTTT--TTCEEEEEECTTCSCH---HHHHH
T ss_pred             -----------------------ChhhhhhhcccceeEEecCCCccCccChhHh--hhccccccccCCchhH---HHHhh
Confidence                                   244566788888  89999999988777664  4578999999988622   23333


Q ss_pred             CCCCccEEEcccCcCcc----cCChhhhhcCC--CCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHh
Q 003888          247 SHRWLRFLDVSNNNFQG----HIPVEIGDILP--SLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAV  320 (788)
Q Consensus       247 ~~~~L~~L~L~~n~i~~----~~~~~~~~~l~--~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~  320 (788)
                      .+.+++...+.-..+.+    .++...+..+.  +|++|++++|.+++..+..|+++++|++|++++|.++ .+|..+. 
T Consensus       221 ~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~-  298 (606)
T 3t6q_A          221 GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV-  298 (606)
T ss_dssp             HTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCC-
T ss_pred             hccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhc-
Confidence            34444433333222211    22222222221  5666677766666666666666666666666666665 5555443 


Q ss_pred             cCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCc-cccCCCCCCEEEccCCcCCCCCcccccCCCCCCE
Q 003888          321 SCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQ-SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKH  399 (788)
Q Consensus       321 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  399 (788)
                      .+++|++|++++|.+++..+..+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+                
T Consensus       299 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l----------------  362 (606)
T 3t6q_A          299 GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI----------------  362 (606)
T ss_dssp             SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCC----------------
T ss_pred             ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcc----------------
Confidence            455566666655555555455555555555555555554433322 244455555555555544                


Q ss_pred             EeCCCCcccCCc--cccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCC
Q 003888          400 IIMPENHLEGPI--PVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYN  477 (788)
Q Consensus       400 L~l~~n~~~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n  477 (788)
                              .+..  +..+..+++|++|++++|.+.+..+                        ..+..+++|++|++++|
T Consensus       363 --------~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------------------~~~~~l~~L~~L~l~~n  410 (606)
T 3t6q_A          363 --------ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT------------------------EAFKECPQLELLDLAFT  410 (606)
T ss_dssp             --------CEEEESTTTTTTCTTCCEEECCSCSCEEECT------------------------TTTTTCTTCSEEECTTC
T ss_pred             --------ccccCcchhcccCCCCCEEECCCCcCCcCCH------------------------HHhcCCccCCeEECCCC
Confidence                    4332  3344455555555555554432211                        11444455555555555


Q ss_pred             cCCCCCCc-cccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCC---CCCcCcccccccCCCCCCCCc
Q 003888          478 RLNGSIPN-WVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIP---PCFDNTTLHESSNNSYSLKPF  553 (788)
Q Consensus       478 ~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~---~~~~~~~~~~~~~~~~~~~~~  553 (788)
                      ++++..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|++.+...   ..+.                 
T Consensus       411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-----------------  473 (606)
T 3t6q_A          411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ-----------------  473 (606)
T ss_dssp             CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGG-----------------
T ss_pred             cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhc-----------------
Confidence            55444332 35556666666666666665555566666666666666666543110   1111                 


Q ss_pred             ccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCc
Q 003888          554 ETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPS  633 (788)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~  633 (788)
                                                         .+++|+.|++++|++++..|..|..+++|++|+|++|++++..|+
T Consensus       474 -----------------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  518 (606)
T 3t6q_A          474 -----------------------------------TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE  518 (606)
T ss_dssp             -----------------------------------GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGG
T ss_pred             -----------------------------------cCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChh
Confidence                                               145778888888888877788888888888888888888888888


Q ss_pred             cccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCC
Q 003888          634 TFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIP  680 (788)
Q Consensus       634 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p  680 (788)
                      .+.++++| +|++++|++++..|..+..+++|+.+++++|++.|.++
T Consensus       519 ~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          519 ALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             GGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             HhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            88888888 88888888888888888888888888999888887665

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.5e-49  Score=455.82  Aligned_cols=531  Identities=20%  Similarity=0.216  Sum_probs=393.3

Q ss_pred             eecCCCCCCCCCccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCc
Q 003888            9 LVRGQGFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRG   88 (788)
Q Consensus         9 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~   88 (788)
                      .+|. .+.  +++++|+|  ++|++++..+..+. ++++|++|++++|.+    ..+++.+|.++++|++|+|++|++++
T Consensus        25 ~ip~-~~~--~~l~~L~L--s~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l----~~i~~~~~~~l~~L~~L~Ls~n~l~~   94 (606)
T 3vq2_A           25 KVPD-DIP--SSTKNIDL--SFNPLKILKSYSFS-NFSELQWLDLSRCEI----ETIEDKAWHGLHHLSNLILTGNPIQS   94 (606)
T ss_dssp             SCCT-TSC--TTCCEEEC--TTSCCCEECTTTTT-TCTTCCEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCCC
T ss_pred             cCCC-CCC--CCcCEEEC--CCCCcCEeChhhcc-CCccCcEEeCCCCcc----cccCHHHhhchhhcCEeECCCCcccc
Confidence            4664 233  78999999  99999988888899 999999999999999    55666689999999999999999998


Q ss_pred             CCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccc-cCCccccccCCCCcEEEccCcccccccccc
Q 003888           89 SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQI-PISLEPLFNHSRLKIFDAANNEIKAEITES  167 (788)
Q Consensus        89 ~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  167 (788)
                      ..|.+|+++++|++|++++|.++ .++...++++++|++|++++|.+.+ .+| ..++++++|++|++++|.+.+..+..
T Consensus        95 ~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp-~~~~~l~~L~~L~Ls~n~l~~~~~~~  172 (606)
T 3vq2_A           95 FSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLP-AYFSNLTNLVHVDLSYNYIQTITVND  172 (606)
T ss_dssp             CCTTSSTTCTTCCEEECTTSCCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCC-GGGGTCTTCCEEECCSSCCCEECTTT
T ss_pred             cChhhcCCcccCCEEEccCCccc-cccccccCCCCCCCEEeCCCCcccceech-HhHhhcCCCCEEEccCCcceecChhh
Confidence            88999999999999999999998 6664479999999999999999975 344 57999999999999999887643322


Q ss_pred             ccCCCCcc-cccEEEccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcC
Q 003888          168 HSLTAPNF-QLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIH  246 (788)
Q Consensus       168 ~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~  246 (788)
                      +....... .+..+++ .++.+.. ++.......+|+.|++++|.+.+......+.+++.++.+++..+.+.+..     
T Consensus       173 ~~~l~~L~~~l~~L~l-~~n~l~~-~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-----  245 (606)
T 3vq2_A          173 LQFLRENPQVNLSLDM-SLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER-----  245 (606)
T ss_dssp             THHHHHCTTCCCEEEC-TTCCCCE-ECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC-----
T ss_pred             hhhhhccccccceeec-cCCCcce-eCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCC-----
Confidence            11110000 1234555 4443332 22222222355555555555543333333345555555554433222100     


Q ss_pred             CCCCccEEEcccCcCcccCChhhhhcCCCCcEEEc-ccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCC
Q 003888          247 SHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNI-SMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNL  325 (788)
Q Consensus       247 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L-~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L  325 (788)
                         .+.       .+.+..+..+..  -.++.+++ ..+.+.+..|. +..+++|+.|++++|.+. .+| .+ ..+++|
T Consensus       246 ---~l~-------~~~~~~~~~l~~--l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l-~~~~~L  309 (606)
T 3vq2_A          246 ---NLE-------IFEPSIMEGLCD--VTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DV-PKHFKW  309 (606)
T ss_dssp             ---CCS-------CCCGGGGTTGGG--SEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CC-CTTCCC
T ss_pred             ---ccc-------ccChHHhhhhhh--ccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hc-cccccC
Confidence               000       000011111111  14566666 55666666666 777888888888888876 666 33 357788


Q ss_pred             CEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCC--CcccccCCCCCCEEeCC
Q 003888          326 EFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGK--IPRWLGNLTGLKHIIMP  403 (788)
Q Consensus       326 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~l~  403 (788)
                      ++|++++|.+..+ + .+ .+++|++|++++|...+..  .+..+++|++|++++|.+++.  .+..+..+++|++|+++
T Consensus       310 ~~L~l~~n~l~~l-p-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~  384 (606)
T 3vq2_A          310 QSLSIIRCQLKQF-P-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS  384 (606)
T ss_dssp             SEEEEESCCCSSC-C-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECC
T ss_pred             CEEEcccccCccc-c-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECC
Confidence            8888888888443 3 44 7888888888888655333  567888899999998888755  26778888999999999


Q ss_pred             CCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCC
Q 003888          404 ENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSI  483 (788)
Q Consensus       404 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  483 (788)
                      +|.+.+ .|..+..+++|++|++++|.+.+..                       +...+..+++|++|++++|.+++..
T Consensus       385 ~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~-----------------------~~~~~~~l~~L~~L~l~~n~l~~~~  440 (606)
T 3vq2_A          385 FNGAII-MSANFMGLEELQHLDFQHSTLKRVT-----------------------EFSAFLSLEKLLYLDISYTNTKIDF  440 (606)
T ss_dssp             SCSEEE-ECCCCTTCTTCCEEECTTSEEESTT-----------------------TTTTTTTCTTCCEEECTTSCCEECC
T ss_pred             CCcccc-chhhccCCCCCCeeECCCCccCCcc-----------------------ChhhhhccccCCEEECcCCCCCccc
Confidence            998874 5577888889999999888876432                       2223677889999999999998888


Q ss_pred             CccccCCCCCCEEEccCCcCcc-ccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccc
Q 003888          484 PNWVDGLSQLSHLILGHNNLEG-EVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSM  562 (788)
Q Consensus       484 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  562 (788)
                      |..+..+++|++|++++|++++ ..|..+..+++|+.|++++|++++..|..+..                         
T Consensus       441 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-------------------------  495 (606)
T 3vq2_A          441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT-------------------------  495 (606)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT-------------------------
T ss_pred             hhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcc-------------------------
Confidence            8889999999999999999987 47888999999999999999998877776655                         


Q ss_pred             cchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCC-CC
Q 003888          563 MIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLK-HI  641 (788)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L  641 (788)
                                                 +++|+.|++++|++++..|..|+++++|++|+|++|+++.+ |..+..++ +|
T Consensus       496 ---------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-p~~~~~l~~~L  547 (606)
T 3vq2_A          496 ---------------------------LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS-KGILQHFPKSL  547 (606)
T ss_dssp             ---------------------------CTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCE-ESCGGGSCTTC
T ss_pred             ---------------------------cccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCccc-CHhHhhhcccC
Confidence                                       44899999999999988899999999999999999999954 55588887 69


Q ss_pred             CEEECcCCcccccCC
Q 003888          642 ESLDLSYNKLNGKIP  656 (788)
Q Consensus       642 ~~L~Ls~N~l~~~~p  656 (788)
                      ++|++++|++.+..+
T Consensus       548 ~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          548 AFFNLTNNSVACICE  562 (606)
T ss_dssp             CEEECCSCCCCCSST
T ss_pred             cEEEccCCCcccCCc
Confidence            999999999997665

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=7e-47  Score=430.77  Aligned_cols=496  Identities=21%  Similarity=0.256  Sum_probs=297.8

Q ss_pred             CCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEE
Q 003888           75 HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFD  154 (788)
Q Consensus        75 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~  154 (788)
                      ++++|++++|.+++..+.+|.++++|++|++++|+++ .++...++++++|++|++++|.+++. +...++++++|++|+
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEE
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCcc-CHhhhcCcccccccc
Confidence            4555555555555555555555555555555555555 34433455555555555555555422 223455555555555


Q ss_pred             ccCccccccccccccCCCCcccccEEEccCCCCCCCCcCccccCCCCCCEEEcCCCcCCC-CCchhHhhcCCCCCEEEcC
Q 003888          155 AANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDG-EFPNWLLENNTKLRQLYLV  233 (788)
Q Consensus       155 l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~L~  233 (788)
                      +++|.+...                            .+..+..+++|++|++++|.+.+ .+|..+ .++++|++|+++
T Consensus       107 L~~n~l~~l----------------------------~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l~  157 (570)
T 2z63_A          107 AVETNLASL----------------------------ENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLS  157 (570)
T ss_dssp             CTTSCCCCS----------------------------TTCSCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECT
T ss_pred             ccccccccC----------------------------CCccccccccccEEecCCCccceecChhhh-cccCCCCEEeCc
Confidence            555543321                            00123455566666666666554 345554 567777777777


Q ss_pred             CCcccccCccCcCCCCCc----cEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCC-CCcccccCCCCCCEEEcccC
Q 003888          234 NDSLTGPFRLPIHSHRWL----RFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDS-SIPSSFGNMNFLQILDLSNN  308 (788)
Q Consensus       234 ~~~l~~~~~~~l~~~~~L----~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n  308 (788)
                      +|.+++..+..+..+++|    +.+++++|.+++..+ ..+... +|++|++++|.... ..+..+.+++.++...+...
T Consensus       158 ~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~-~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~  235 (570)
T 2z63_A          158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP-GAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG  235 (570)
T ss_dssp             TSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECT-TTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEE
T ss_pred             CCccceecHHHccchhccchhhhhcccCCCCceecCH-HHhccC-cceeEecccccccccchhhhhcCccccceeeeccc
Confidence            777776655555555555    566666666653333 222222 56666666553221 22334444555554444322


Q ss_pred             cCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCC--CCCEEeccCC-cCCCcCCccccCCCCCCEEEccCCcCCC
Q 003888          309 QLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLT--NLRSLQLEGN-HLEGEIPQSLSKCSSLEGLYLNNNSLSG  385 (788)
Q Consensus       309 ~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~--~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~n~i~~  385 (788)
                      .+..         ..+          +.......+..++  .++.++++++ .+.+..+..+..+++|++|++++|.+. 
T Consensus       236 ~~~~---------~~~----------l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-  295 (570)
T 2z63_A          236 EFRN---------EGN----------LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-  295 (570)
T ss_dssp             ECCC---------CSS----------CEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-
T ss_pred             cccC---------chh----------hhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-
Confidence            2110         000          0001111111111  2445555555 444455566666666666666666665 


Q ss_pred             CCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccC-ccccc
Q 003888          386 KIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLK-RGTFF  464 (788)
Q Consensus       386 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~  464 (788)
                      ..|..+..+ +|++|++++|.+. .+|.  ..+++|+.|++++|.+.+..+. ..+++|+.|++++|.+.+... ...+.
T Consensus       296 ~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~  370 (570)
T 2z63_A          296 RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDF  370 (570)
T ss_dssp             SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHH
T ss_pred             hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCcccccccccc
Confidence            455555555 6666666666665 2332  3456666666666665544333 335556666666665543320 12366


Q ss_pred             CCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccC-cccCCCCCCCEEEccCCcCCCCCCCCCcCcccccc
Q 003888          465 HCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVP-VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES  543 (788)
Q Consensus       465 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~  543 (788)
                      .+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|++.+..|..+..      
T Consensus       371 ~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------  443 (570)
T 2z63_A          371 GTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG------  443 (570)
T ss_dssp             TCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT------
T ss_pred             ccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc------
Confidence            778888888888887754443 7778888888888888876554 46777888888888888877666665554      


Q ss_pred             cCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCccc-ccCcccccCcccCCeEeC
Q 003888          544 SNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI-GHIPPQIGNLTRIQTLNL  622 (788)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L  622 (788)
                                                                    +++|+.|++++|.++ +.+|..+..+++|++|++
T Consensus       444 ----------------------------------------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l  477 (570)
T 2z63_A          444 ----------------------------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL  477 (570)
T ss_dssp             ----------------------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred             ----------------------------------------------CCcCcEEECcCCcCccccchhhhhcccCCCEEEC
Confidence                                                          347888888888876 467778888888888888


Q ss_pred             CCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCC
Q 003888          623 SHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPE  681 (788)
Q Consensus       623 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~  681 (788)
                      ++|++++..|..|..+++|++|++++|++++..|..+..+++|+.|++++|+++|.+|.
T Consensus       478 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          478 SQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            88888887788888888888888888888877777788888888888888888887774

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.1e-46  Score=424.39  Aligned_cols=491  Identities=19%  Similarity=0.214  Sum_probs=316.9

Q ss_pred             CCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCC
Q 003888           47 SLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIE  126 (788)
Q Consensus        47 ~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~  126 (788)
                      ++++|++++|.+    ..+++.+|.++++|++|+|++|++++..|.+|+++++|++|++++|.++ .++...|+++++|+
T Consensus        29 ~l~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~  103 (570)
T 2z63_A           29 STKNLDLSFNPL----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQ  103 (570)
T ss_dssp             SCCEEECCSCCC----CEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCC
T ss_pred             cccEEEccCCcc----CccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCccccc
Confidence            455555555555    3333334555555555555555555444555555555555555555554 33333455555555


Q ss_pred             EEECcCccccccCCccccccCCCCcEEEccCccccccccccccCCCCcccccEEEccCCCCCCCCcCccccCCCCCCEEE
Q 003888          127 ELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVR  206 (788)
Q Consensus       127 ~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  206 (788)
                      +|++++|.+++. +...++++++|++|++++|.+.+                           ..+|..+..+++|++|+
T Consensus       104 ~L~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n~l~~---------------------------~~lp~~~~~l~~L~~L~  155 (570)
T 2z63_A          104 KLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQS---------------------------FKLPEYFSNLTNLEHLD  155 (570)
T ss_dssp             EEECTTSCCCCS-TTCSCTTCTTCCEEECCSSCCCC---------------------------CCCCGGGGGCTTCCEEE
T ss_pred             cccccccccccC-CCccccccccccEEecCCCccce---------------------------ecChhhhcccCCCCEEe
Confidence            555555555422 21235555555555555554321                           11344555566666666


Q ss_pred             cCCCcCCCCCchhHhhcCCCC----CEEEcCCCcccccCccCcCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcc
Q 003888          207 LSHVNMDGEFPNWLLENNTKL----RQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNIS  282 (788)
Q Consensus       207 l~~~~~~~~~~~~~~~~l~~L----~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~  282 (788)
                      +++|.+.+..+..+ +.+++|    +.|++++|.+++..+..+... +|+.|++++|.............+++++...+.
T Consensus       156 l~~n~l~~~~~~~~-~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~  233 (570)
T 2z63_A          156 LSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV  233 (570)
T ss_dssp             CTTSCCCEECGGGG-HHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEE
T ss_pred             CcCCccceecHHHc-cchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeec
Confidence            66666555444332 344555    677777777776666666554 677777777644322222223335566655554


Q ss_pred             cCcCC------CCCcccccCCCC--CCEEEcccC-cCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEe
Q 003888          283 MNALD------SSIPSSFGNMNF--LQILDLSNN-QLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQ  353 (788)
Q Consensus       283 ~n~~~------~~~~~~~~~l~~--L~~L~l~~n-~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  353 (788)
                      ...+.      ......+..+.+  ++.++++++ .+.+.++..+. .+++|++|++++|.++. .+..+..+ +|++|+
T Consensus       234 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~  310 (570)
T 2z63_A          234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN-CLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLE  310 (570)
T ss_dssp             EEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTG-GGTTCSEEEEESCEECS-CCBCCSCC-CCSEEE
T ss_pred             cccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhc-CcCcccEEEecCccchh-hhhhhccC-CccEEe
Confidence            32221      111122222222  445566655 44444444443 56777777777777765 34445555 777777


Q ss_pred             ccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCc--cccccCCCCccEEEccCCcC
Q 003888          354 LEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPI--PVGFCQLYSLQILDISDNNI  431 (788)
Q Consensus       354 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~l~~n~~  431 (788)
                      +++|.+. .+|.  ..+++|++|++++|.+.+..+.  ..+++|++|++++|.+.+..  +..+..+++|++|++++|.+
T Consensus       311 l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l  385 (570)
T 2z63_A          311 LVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV  385 (570)
T ss_dssp             EESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE
T ss_pred             eccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcc
Confidence            7777776 4443  4567777777777776654443  56777777777777776543  55667777777777777765


Q ss_pred             CCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCC-ccccCCCCCCEEEccCCcCccccCcc
Q 003888          432 SGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIP-NWVDGLSQLSHLILGHNNLEGEVPVQ  510 (788)
Q Consensus       432 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~  510 (788)
                      .+                        ++.. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..
T Consensus       386 ~~------------------------~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  440 (570)
T 2z63_A          386 IT------------------------MSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI  440 (570)
T ss_dssp             EE------------------------EEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred             cc------------------------cccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhh
Confidence            42                        2223 6678888999999988876655 46788899999999999998888888


Q ss_pred             cCCCCCCCEEEccCCcCC-CCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccc
Q 003888          511 LCELNQLQLLDLSNNNLH-GPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKV  589 (788)
Q Consensus       511 l~~l~~L~~L~Ls~n~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (788)
                      +.++++|+.|++++|++. +.+|..+..                                                    
T Consensus       441 ~~~l~~L~~L~l~~n~l~~~~~p~~~~~----------------------------------------------------  468 (570)
T 2z63_A          441 FNGLSSLEVLKMAGNSFQENFLPDIFTE----------------------------------------------------  468 (570)
T ss_dssp             TTTCTTCCEEECTTCEEGGGEECSCCTT----------------------------------------------------
T ss_pred             hhcCCcCcEEECcCCcCccccchhhhhc----------------------------------------------------
Confidence            889999999999999886 345555544                                                    


Q ss_pred             cccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCc
Q 003888          590 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH  657 (788)
Q Consensus       590 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  657 (788)
                      +++|+.|++++|++++..|..|..+++|++|++++|++++..+..|..+++|++|++++|++++..|.
T Consensus       469 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             ccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            45899999999999988899999999999999999999999889999999999999999999987764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.3e-45  Score=426.44  Aligned_cols=550  Identities=20%  Similarity=0.199  Sum_probs=303.8

Q ss_pred             CCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCC
Q 003888           29 ARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSN  108 (788)
Q Consensus        29 ~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n  108 (788)
                      ++.+++ .+|..+.   +++++|||++|.+    ..+++.+|.++++|++|+|++|+|++..|.+|.++++|++|+|++|
T Consensus        39 ~~~~l~-~vP~~lp---~~~~~LdLs~N~i----~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N  110 (635)
T 4g8a_A           39 MELNFY-KIPDNLP---FSTKNLDLSFNPL----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN  110 (635)
T ss_dssp             TTSCCS-SCCSSSC---TTCCEEECTTSCC----CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             CCCCcC-ccCCCCC---cCCCEEEeeCCCC----CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence            555555 3454333   4788888888888    6677667888888888888888888777778888888888888888


Q ss_pred             cCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCccccccccccccCCCCcccccEEEccCCCCC
Q 003888          109 QLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGD  188 (788)
Q Consensus       109 ~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  188 (788)
                      +++ .+|...|+++++|++|++++|++++ ++...++++++|++|++++|.+..                          
T Consensus       111 ~l~-~l~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~--------------------------  162 (635)
T 4g8a_A          111 PIQ-SLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQS--------------------------  162 (635)
T ss_dssp             CCC-EECGGGGTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCC--------------------------
T ss_pred             cCC-CCCHHHhcCCCCCCEEECCCCcCCC-CChhhhhcCcccCeeccccCcccc--------------------------
Confidence            887 7777678888888888888888874 444567888888888888877642                          


Q ss_pred             CCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCC----CCCEEEcCCCcccccCccCcCCCCCccEEEcccCcCccc
Q 003888          189 GVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNT----KLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGH  264 (788)
Q Consensus       189 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~----~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~  264 (788)
                       ...|..+..+++|++|++++|.+.+..+..+ ..+.    ....++++.|.++...+..+. ...++.+++.+|.....
T Consensus       163 -~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l-~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~  239 (635)
T 4g8a_A          163 -FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLN  239 (635)
T ss_dssp             -CCCCGGGGGCTTCCEEECCSSCCCEECGGGG-HHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHH
T ss_pred             -CCCchhhccchhhhhhcccCccccccccccc-cchhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhccccccc
Confidence             1235666777888888888888877655543 2222    344677777777655444333 33466677777765544


Q ss_pred             CChhhhhcCCCCcEEEcccCcCC------CCCcccccCCCCCCEEEcccCcCCCccc--hHHHhcCCCCCEEEccCccCC
Q 003888          265 IPVEIGDILPSLISFNISMNALD------SSIPSSFGNMNFLQILDLSNNQLTGEIP--EHLAVSCVNLEFLALSNNNLK  336 (788)
Q Consensus       265 ~~~~~~~~l~~L~~L~L~~n~~~------~~~~~~~~~l~~L~~L~l~~n~i~~~i~--~~~~~~l~~L~~L~L~~n~i~  336 (788)
                      ++...+..++.++...+..+...      ......+..+..+....+..+.......  ...+..+.+++.+++.++.+.
T Consensus       240 ~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~  319 (635)
T 4g8a_A          240 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE  319 (635)
T ss_dssp             HHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEE
T ss_pred             ccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccc
Confidence            44444444566666555433221      1122223333344444433332211100  001112334444444444333


Q ss_pred             CcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCcccccc
Q 003888          337 GHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFC  416 (788)
Q Consensus       337 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  416 (788)
                      ...  .+.....++.|++.+|.+....+   ..++.|+.+++..|..                        ...  ....
T Consensus       320 ~~~--~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~------------------------~~~--~~~~  368 (635)
T 4g8a_A          320 RVK--DFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKG------------------------GNA--FSEV  368 (635)
T ss_dssp             ECG--GGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCS------------------------CCB--CCCC
T ss_pred             ccc--ccccchhhhhhhcccccccCcCc---ccchhhhhcccccccC------------------------CCC--cccc
Confidence            321  12223344444444444332211   1223344444444433                        211  1122


Q ss_pred             CCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEE
Q 003888          417 QLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHL  496 (788)
Q Consensus       417 ~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  496 (788)
                      .+++|+.+++++|.+...                     +..+. .+..+.+|+.+++..+.... .+..+..+++|+.+
T Consensus       369 ~l~~L~~L~ls~n~l~~~---------------------~~~~~-~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l  425 (635)
T 4g8a_A          369 DLPSLEFLDLSRNGLSFK---------------------GCCSQ-SDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHL  425 (635)
T ss_dssp             BCTTCCEEECCSSCCBEE---------------------EECCH-HHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEE
T ss_pred             cccccccchhhccccccc---------------------ccccc-chhhhhhhhhhhcccccccc-ccccccccccccch
Confidence            334444444444433211                     00111 12233444555555444432 22334444555555


Q ss_pred             EccCCcCcccc-CcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhcccccee
Q 003888          497 ILGHNNLEGEV-PVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFE  575 (788)
Q Consensus       497 ~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  575 (788)
                      ++.+++..... +..+..+++++.+++++|.+.+..+..+..                                      
T Consensus       426 ~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~--------------------------------------  467 (635)
T 4g8a_A          426 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG--------------------------------------  467 (635)
T ss_dssp             ECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT--------------------------------------
T ss_pred             hhhhcccccccccccccccccccccccccccccccccccccc--------------------------------------
Confidence            55544443222 233445555555555555554444433332                                      


Q ss_pred             eeeccceeeecccccccccEEECCCCcc-cccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCccccc
Q 003888          576 FTTKNIAYIYQGKVLSLLSGLDLSCNKL-IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGK  654 (788)
Q Consensus       576 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  654 (788)
                                    ++.++.|++++|.+ .+..|..|..+++|++|+|++|+++++.|..|+++++|++|+|++|+|++.
T Consensus       468 --------------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l  533 (635)
T 4g8a_A          468 --------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL  533 (635)
T ss_dssp             --------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBC
T ss_pred             --------------chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCC
Confidence                          22455555555543 223455555666666666666666666566666666666666666666655


Q ss_pred             CCccccCCCCCCEEEccCCcCcccCCCccccc-CCCCccccCCCCCCCCCCC-------------------CCCCCCCCC
Q 003888          655 IPHQLVELKTLAVFSVAYNNLSGEIPEWTAQF-ATFNESSYEGNTFLCGLPL-------------------PICRSPATM  714 (788)
Q Consensus       655 ~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~~~~~~~~gn~~~c~~~l-------------------~~c~~~~~~  714 (788)
                      .|..|..+++|++|++++|++++..|+.+..+ .+++.+++.+|||.|+|++                   ..|.+|...
T Consensus       534 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~  613 (635)
T 4g8a_A          534 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK  613 (635)
T ss_dssp             CCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTT
T ss_pred             ChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHH
Confidence            55556666666666666666666656555554 3555666666666666643                   168999988


Q ss_pred             CcccCCCCC
Q 003888          715 SEASIGNER  723 (788)
Q Consensus       715 ~~~~~~~~~  723 (788)
                      +|+++..++
T Consensus       614 ~g~~l~~~~  622 (635)
T 4g8a_A          614 QGMPVLSLN  622 (635)
T ss_dssp             TTCBGGGCC
T ss_pred             CCCEeeeec
Confidence            888766554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=8.2e-46  Score=419.66  Aligned_cols=490  Identities=21%  Similarity=0.198  Sum_probs=309.5

Q ss_pred             EEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEE
Q 003888           50 YLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM  129 (788)
Q Consensus        50 ~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~  129 (788)
                      +.|.+++.+    ..+|. .+.  ++|++|++++|++++..|.+|.++++|++|++++|.++ .++...++++++|++|+
T Consensus         9 ~c~~~~~~l----~~ip~-~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~   80 (549)
T 2z81_A            9 VCDGRSRSF----TSIPS-GLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLD   80 (549)
T ss_dssp             EEECTTSCC----SSCCS-CCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEE
T ss_pred             eEECCCCcc----ccccc-cCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEE
Confidence            345555555    34443 222  45566666666555555555555666666666666555 33322555556666666


Q ss_pred             CcCccccccCCccccccCCCCcEEEccCccccccccccccCCCCcccccEEEccCCCCCCCCcCccccCCCCCCEEEcCC
Q 003888          130 LSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSH  209 (788)
Q Consensus       130 Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  209 (788)
                      +++|.+.+. +...++++++|++|++++|.+.+.                           ..|..+..+++|++|++++
T Consensus        81 Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~---------------------------~~~~~~~~l~~L~~L~L~~  132 (549)
T 2z81_A           81 LSDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQTL---------------------------GVTSLFPNLTNLQTLRIGN  132 (549)
T ss_dssp             CTTSCCCSC-CHHHHTTCTTCCEEECTTCCCSSS---------------------------CSSCSCTTCTTCCEEEEEE
T ss_pred             CCCCccCcc-CHHHhccCCCCcEEECCCCccccc---------------------------chhhhhhccCCccEEECCC
Confidence            666655532 223455555566665555544310                           1233445566677777776


Q ss_pred             CcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCC
Q 003888          210 VNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSS  289 (788)
Q Consensus       210 ~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~  289 (788)
                      |...+.+|...+.++++|++|++++|.+++..+..+..+++|+.|+++.|.+. .+|..+...+++|++|++++|.+++.
T Consensus       133 n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~  211 (549)
T 2z81_A          133 VETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARF  211 (549)
T ss_dssp             SSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred             CccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccc
Confidence            66545555444467888888888888888888888888999999999999886 67777666688999999999998864


Q ss_pred             C--c-ccccCCCCCCEEEcccCcCCCccchHHH---hcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcC
Q 003888          290 I--P-SSFGNMNFLQILDLSNNQLTGEIPEHLA---VSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEI  363 (788)
Q Consensus       290 ~--~-~~~~~l~~L~~L~l~~n~i~~~i~~~~~---~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~  363 (788)
                      .  + .....+++|+.|++++|.+++..+..+.   ..+++|+.+++++|.+.+.....     .             ..
T Consensus       212 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~-----~-------------~~  273 (549)
T 2z81_A          212 QFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN-----P-------------SE  273 (549)
T ss_dssp             CCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCC-----C-------------CT
T ss_pred             cccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccc-----c-------------cc
Confidence            2  1 2235578899999999988755554442   24567777777777655421100     0             00


Q ss_pred             CccccCCCCCCEEEccCCcCCCCC-----cccccCCCCCCEEeCCCCcccCCccccc-cCCCCccEEEccCCcCCCCCCC
Q 003888          364 PQSLSKCSSLEGLYLNNNSLSGKI-----PRWLGNLTGLKHIIMPENHLEGPIPVGF-CQLYSLQILDISDNNISGSLPS  437 (788)
Q Consensus       364 ~~~l~~l~~L~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~  437 (788)
                      ...+..+++++.|++.++.+....     +..+...++|++|++++|.+. .+|..+ ..+++|++|++++|.+.+    
T Consensus       274 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~----  348 (549)
T 2z81_A          274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVE----  348 (549)
T ss_dssp             TTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCH----
T ss_pred             hhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcccc----
Confidence            112344555666666655543210     111122345555555555554 233332 345555555555555542    


Q ss_pred             CCCCCCccEEEccCcccccccC--cccccCCCCCcEEEccCCcCCCCCC--ccccCCCCCCEEEccCCcCccccCcccCC
Q 003888          438 CFHPLSIEQVHLSKNMLHGQLK--RGTFFHCSSLVTLDLSYNRLNGSIP--NWVDGLSQLSHLILGHNNLEGEVPVQLCE  513 (788)
Q Consensus       438 ~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  513 (788)
                                         .++  ...+..+++|++|++++|++++..+  ..+..+++|++|++++|+++ .+|..+..
T Consensus       349 -------------------~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  408 (549)
T 2z81_A          349 -------------------EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW  408 (549)
T ss_dssp             -------------------HHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCC
T ss_pred             -------------------ccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcc
Confidence                               221  1124566777777777777765432  34677788888888888877 55667777


Q ss_pred             CCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccc
Q 003888          514 LNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLL  593 (788)
Q Consensus       514 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  593 (788)
                      +++|++|++++|++.+.. ..+                                                      +++|
T Consensus       409 ~~~L~~L~Ls~N~l~~l~-~~~------------------------------------------------------~~~L  433 (549)
T 2z81_A          409 PEKMRFLNLSSTGIRVVK-TCI------------------------------------------------------PQTL  433 (549)
T ss_dssp             CTTCCEEECTTSCCSCCC-TTS------------------------------------------------------CTTC
T ss_pred             cccccEEECCCCCccccc-chh------------------------------------------------------cCCc
Confidence            888888888888775321 111                                                      2368


Q ss_pred             cEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCC
Q 003888          594 SGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYN  673 (788)
Q Consensus       594 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N  673 (788)
                      +.|++++|++++..    ..+++|++|+|++|+++.+ |. ...+++|++|++++|++++.+|..+..+++|+.|++++|
T Consensus       434 ~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~i-p~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  507 (549)
T 2z81_A          434 EVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTL-PD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN  507 (549)
T ss_dssp             SEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSC-CC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred             eEEECCCCChhhhc----ccCChhcEEECCCCccCcC-CC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCC
Confidence            88888888887642    5678888999999988854 43 456888999999999998888888888899999999999


Q ss_pred             cCcccCC
Q 003888          674 NLSGEIP  680 (788)
Q Consensus       674 ~l~~~~p  680 (788)
                      +++|.+|
T Consensus       508 ~~~~~~~  514 (549)
T 2z81_A          508 PWDCSCP  514 (549)
T ss_dssp             CBCCCHH
T ss_pred             CccCCCc
Confidence            9888776

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1e-45  Score=418.84  Aligned_cols=488  Identities=19%  Similarity=0.218  Sum_probs=353.2

Q ss_pred             CEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEcc
Q 003888           77 QELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAA  156 (788)
Q Consensus        77 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~  156 (788)
                      .+.+.+++.++ .+|..+.  ++|++|++++|.++ .++...++++++|++|++++|.+.+..+ ..+++          
T Consensus         8 ~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~----------   72 (549)
T 2z81_A            8 GVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEG-DAFYS----------   72 (549)
T ss_dssp             SEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECT-TTTTT----------
T ss_pred             ceEECCCCccc-cccccCC--CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccCh-hhccc----------
Confidence            34566667666 4454443  67777777777776 3433367777777777777776653222 23444          


Q ss_pred             CccccccccccccCCCCcccccEEEccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCc
Q 003888          157 NNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDS  236 (788)
Q Consensus       157 ~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  236 (788)
                                                                +++|++|++++|.+.+..+.. ++++++|++|++++|.
T Consensus        73 ------------------------------------------l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~  109 (549)
T 2z81_A           73 ------------------------------------------LGSLEHLDLSDNHLSSLSSSW-FGPLSSLKYLNLMGNP  109 (549)
T ss_dssp             ------------------------------------------CTTCCEEECTTSCCCSCCHHH-HTTCTTCCEEECTTCC
T ss_pred             ------------------------------------------cccCCEEECCCCccCccCHHH-hccCCCCcEEECCCCc
Confidence                                                      445555555555555433333 3677788888888887


Q ss_pred             cccc-CccCcCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccc
Q 003888          237 LTGP-FRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIP  315 (788)
Q Consensus       237 l~~~-~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~  315 (788)
                      +++. .+..+..+++|++|++++|.+.+.+|...+..+++|++|++++|.+++..|..++++++|++|++++|.+. .+|
T Consensus       110 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~  188 (549)
T 2z81_A          110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLL  188 (549)
T ss_dssp             CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THH
T ss_pred             ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccc
Confidence            7763 45678888899999999998555777655556899999999999999888999999999999999999987 888


Q ss_pred             hHHHhcCCCCCEEEccCccCCCcCc---ccCcCCCCCCEEeccCCcCCCcCC----ccccCCCCCCEEEccCCcCCCCCc
Q 003888          316 EHLAVSCVNLEFLALSNNNLKGHMF---SRNFNLTNLRSLQLEGNHLEGEIP----QSLSKCSSLEGLYLNNNSLSGKIP  388 (788)
Q Consensus       316 ~~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~L~~n~i~~~~~  388 (788)
                      ..++..+++|++|++++|++++...   .....+++|+.|++++|.+++..+    ..+..+++|+.+++++|.+.+...
T Consensus       189 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~  268 (549)
T 2z81_A          189 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD  268 (549)
T ss_dssp             HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSC
T ss_pred             hhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccc
Confidence            8887779999999999999987532   223356788888888887765333    334567788888888887653211


Q ss_pred             ccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCC-----CCCC-CCCCccEEEccCcccccccCccc
Q 003888          389 RWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSL-----PSCF-HPLSIEQVHLSKNMLHGQLKRGT  462 (788)
Q Consensus       389 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-----~~~~-~~~~L~~L~l~~n~~~~~~~~~~  462 (788)
                        +   +.             .....+..+++++.|++.++.+....     +..+ ...+++.+++++|.+ ..+|...
T Consensus       269 --~---~~-------------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l-~~ip~~~  329 (549)
T 2z81_A          269 --F---NP-------------SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSF  329 (549)
T ss_dssp             --C---CC-------------CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC-CCCCHHH
T ss_pred             --c---cc-------------cchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc-ccCCHHH
Confidence              0   00             00011233344444444444433210     0000 024566666666665 3566664


Q ss_pred             ccCCCCCcEEEccCCcCCCCCC---ccccCCCCCCEEEccCCcCccccC--cccCCCCCCCEEEccCCcCCCCCCCCCcC
Q 003888          463 FFHCSSLVTLDLSYNRLNGSIP---NWVDGLSQLSHLILGHNNLEGEVP--VQLCELNQLQLLDLSNNNLHGPIPPCFDN  537 (788)
Q Consensus       463 ~~~~~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~  537 (788)
                      +..+++|++|++++|++++..|   ..+..+++|++|++++|++++..+  ..+..+++|++|++++|++++ +|..+..
T Consensus       330 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~  408 (549)
T 2z81_A          330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQW  408 (549)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCC
T ss_pred             HhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcc
Confidence            5789999999999999987654   346789999999999999986543  458899999999999999983 4444433


Q ss_pred             cccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccC
Q 003888          538 TTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRI  617 (788)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  617 (788)
                                                                          +++|++|++++|++++ +|..+  .++|
T Consensus       409 ----------------------------------------------------~~~L~~L~Ls~N~l~~-l~~~~--~~~L  433 (549)
T 2z81_A          409 ----------------------------------------------------PEKMRFLNLSSTGIRV-VKTCI--PQTL  433 (549)
T ss_dssp             ----------------------------------------------------CTTCCEEECTTSCCSC-CCTTS--CTTC
T ss_pred             ----------------------------------------------------cccccEEECCCCCccc-ccchh--cCCc
Confidence                                                                4589999999999984 44443  2689


Q ss_pred             CeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCCcccccCCCCccccCCC
Q 003888          618 QTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGN  697 (788)
Q Consensus       618 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~gn  697 (788)
                      ++|++++|++++.+    ..+++|++|++++|+++ .+|. ...+++|++|++++|++++.+|+++..+..+..+++.+|
T Consensus       434 ~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  507 (549)
T 2z81_A          434 EVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN  507 (549)
T ss_dssp             SEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred             eEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCC
Confidence            99999999999753    57899999999999998 6776 468999999999999999999998999999999999999


Q ss_pred             CCCCCCC
Q 003888          698 TFLCGLP  704 (788)
Q Consensus       698 ~~~c~~~  704 (788)
                      |+.|+|+
T Consensus       508 ~~~~~~~  514 (549)
T 2z81_A          508 PWDCSCP  514 (549)
T ss_dssp             CBCCCHH
T ss_pred             CccCCCc
Confidence            9999997

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.7e-46  Score=426.56  Aligned_cols=394  Identities=20%  Similarity=0.257  Sum_probs=287.2

Q ss_pred             CCcccccCccCcCCCCCccEEEcccCcCccc-----------------CChhhh-hcCCCCcEEEcccCcCCCCCccccc
Q 003888          234 NDSLTGPFRLPIHSHRWLRFLDVSNNNFQGH-----------------IPVEIG-DILPSLISFNISMNALDSSIPSSFG  295 (788)
Q Consensus       234 ~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~-----------------~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~  295 (788)
                      +|.+++ +|..++++++|++|++++|.+++.                 +|..+. ..+++|++|++++|.+.+.+|..++
T Consensus       192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~  270 (636)
T 4eco_A          192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK  270 (636)
T ss_dssp             SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred             cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence            467777 777888888888888888888864                 787776 1378899999999998888888899


Q ss_pred             CCCCCCEEEcccCc-CCC-ccchHHHh-----cCCCCCEEEccCccCCCcCcc--cCcCCCCCCEEeccCCcCCCcCCcc
Q 003888          296 NMNFLQILDLSNNQ-LTG-EIPEHLAV-----SCVNLEFLALSNNNLKGHMFS--RNFNLTNLRSLQLEGNHLEGEIPQS  366 (788)
Q Consensus       296 ~l~~L~~L~l~~n~-i~~-~i~~~~~~-----~l~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~  366 (788)
                      ++++|++|++++|+ +++ .+|..+..     .+++|++|++++|+++. .+.  .+.++++|++|++++|.+++.+| .
T Consensus       271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~-ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~  348 (636)
T 4eco_A          271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT-FPVETSLQKMKKLGMLECLYNQLEGKLP-A  348 (636)
T ss_dssp             TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS-CCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred             cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc-cCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence            99999999999998 887 78887763     13788888888888884 445  67788888888888888887777 7


Q ss_pred             ccCCCCCCEEEccCCcCCCCCcccccCCCC-CCEEeCCCCcccCCccccccCCC--CccEEEccCCcCCCCCCCCCCCCC
Q 003888          367 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTG-LKHIIMPENHLEGPIPVGFCQLY--SLQILDISDNNISGSLPSCFHPLS  443 (788)
Q Consensus       367 l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~~~~  443 (788)
                      +..+++|++|++++|.++ .+|..+..+++ |++|++++|.+. .+|..+..++  +|++|++++|.+.+..|..+... 
T Consensus       349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~-  425 (636)
T 4eco_A          349 FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL-  425 (636)
T ss_dssp             CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT-
T ss_pred             hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccc-
Confidence            778888888888888877 66777777777 888888888877 5666665544  77888888887776555433200 


Q ss_pred             ccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCC-------CC
Q 003888          444 IEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCEL-------NQ  516 (788)
Q Consensus       444 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-------~~  516 (788)
                                     ... ...+++|++|++++|+++...+..+..+++|++|++++|+++...+..+...       ++
T Consensus       426 ---------------~~~-~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~  489 (636)
T 4eco_A          426 ---------------DPT-PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL  489 (636)
T ss_dssp             ---------------CSS-CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGG
T ss_pred             ---------------ccc-cccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCC
Confidence                           000 1145677888888888775444455667888888888888874333333333       27


Q ss_pred             CCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEE
Q 003888          517 LQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGL  596 (788)
Q Consensus       517 L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  596 (788)
                      |+.|++++|+++ .+|..+..                                                  ..+++|+.|
T Consensus       490 L~~L~Ls~N~l~-~lp~~~~~--------------------------------------------------~~l~~L~~L  518 (636)
T 4eco_A          490 LTSIDLRFNKLT-KLSDDFRA--------------------------------------------------TTLPYLVGI  518 (636)
T ss_dssp             CCEEECCSSCCC-BCCGGGST--------------------------------------------------TTCTTCCEE
T ss_pred             ccEEECcCCcCC-ccChhhhh--------------------------------------------------ccCCCcCEE
Confidence            888888888877 34433320                                                  014578888


Q ss_pred             ECCCCcccccCcccccCcccCCeEeC------CCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEc
Q 003888          597 DLSCNKLIGHIPPQIGNLTRIQTLNL------SHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSV  670 (788)
Q Consensus       597 ~Ls~n~l~~~~~~~l~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  670 (788)
                      +|++|++++ +|..+..+++|++|+|      ++|++.+.+|..+..+++|++|++++|++ +.+|..+.  ++|+.|++
T Consensus       519 ~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~L  594 (636)
T 4eco_A          519 DLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDI  594 (636)
T ss_dssp             ECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEEC
T ss_pred             ECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEEC
Confidence            888888886 7888888888888888      56778888899999999999999999999 47777655  79999999


Q ss_pred             cCCcCcccCCCccccc--CCCCccccCCCCCCCCCC
Q 003888          671 AYNNLSGEIPEWTAQF--ATFNESSYEGNTFLCGLP  704 (788)
Q Consensus       671 ~~N~l~~~~p~~~~~~--~~~~~~~~~gn~~~c~~~  704 (788)
                      ++|++.+..+..+...  .....+.+.....+|+|+
T Consensus       595 s~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~  630 (636)
T 4eco_A          595 KDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD  630 (636)
T ss_dssp             CSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCG
T ss_pred             cCCCCccccHHhcchhhhcccceeecCCccccCCCc
Confidence            9998886554433221  223344455556666665

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.2e-45  Score=422.45  Aligned_cols=463  Identities=17%  Similarity=0.211  Sum_probs=237.4

Q ss_pred             CCCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcC------cC------cCChhhhcCCCCCCEEECcCccccccCCc
Q 003888           74 MHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQL------TG------SISSSPLVHLTSIEELMLSNNHFQIPISL  141 (788)
Q Consensus        74 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~------~~------~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~  141 (788)
                      .+++.|+|+++.+.+.+|.+++++++|++|+|++|.+      .|      .+|...   +.+|+ +++++|.+.+.++.
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~  156 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRE  156 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchh
Confidence            3566777777777777777777777777777777754      12      344311   33444 55665555543332


Q ss_pred             cccccCCCCcEEEccCccccccccccccCCCCcccccEEEccC-CCCCCCCcCccccCCCCCCEEEcCCCcCCCC-----
Q 003888          142 EPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSS-GYGDGVTFPKFLYHQHDLEDVRLSHVNMDGE-----  215 (788)
Q Consensus       142 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-----  215 (788)
                      ..-..+..+..+++....+..         .....++.+.+.. ++.+.+ +|..++++++|++|++++|.+.+.     
T Consensus       157 ~~~~~~~~l~~~~l~~~~~~~---------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~  226 (636)
T 4eco_A          157 DFSDLIKDCINSDPQQKSIKK---------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEA  226 (636)
T ss_dssp             GSCHHHHHHHHHCTTSCCCCC---------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSS
T ss_pred             hHHHHHHHHhhcCcccccccc---------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccc
Confidence            111111111111111111100         0000111111111 223333 566666666666666666666553     


Q ss_pred             ------------CchhHhh--cCCCCCEEEcCCCcccccCccCcCCCCCccEEEcccCc-Ccc-cCChhhhhc-----CC
Q 003888          216 ------------FPNWLLE--NNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNN-FQG-HIPVEIGDI-----LP  274 (788)
Q Consensus       216 ------------~~~~~~~--~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~-i~~-~~~~~~~~~-----l~  274 (788)
                                  +|..+ .  ++++|++|++++|.+.+.+|..+..+++|++|++++|+ +++ .+|..++..     ++
T Consensus       227 ~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~  305 (636)
T 4eco_A          227 WENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE  305 (636)
T ss_dssp             CSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG
T ss_pred             ccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCC
Confidence                        44443 2  45555555555555555555555555555555555555 554 455444431     24


Q ss_pred             CCcEEEcccCcCCCCCcc--cccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCC-CCE
Q 003888          275 SLISFNISMNALDSSIPS--SFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTN-LRS  351 (788)
Q Consensus       275 ~L~~L~L~~n~~~~~~~~--~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~  351 (788)
                      +|++|++++|.++ .+|.  .++++++|++|++++|.++|.+| . +..+++|++|++++|+++ ..+..+..+++ |++
T Consensus       306 ~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~  381 (636)
T 4eco_A          306 KIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVEN  381 (636)
T ss_dssp             TCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCE
T ss_pred             CCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEECCCCccc-cccHhhhhhcccCcE
Confidence            5555555555554 3444  45555555555555555544444 2 223444455555544444 22333444444 444


Q ss_pred             EeccCCcCCCcCCccccCCC--CCCEEEccCCcCCCCCccccc-------CCCCCCEEeCCCCcccCCccccccCCCCcc
Q 003888          352 LQLEGNHLEGEIPQSLSKCS--SLEGLYLNNNSLSGKIPRWLG-------NLTGLKHIIMPENHLEGPIPVGFCQLYSLQ  422 (788)
Q Consensus       352 L~l~~n~l~~~~~~~l~~l~--~L~~L~L~~n~i~~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  422 (788)
                      |++++|.++ .+|..+..++  +|++|++++|.+.+..|..+.       .+++|++|++++|.+....+..+..+++|+
T Consensus       382 L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~  460 (636)
T 4eco_A          382 LSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS  460 (636)
T ss_dssp             EECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCS
T ss_pred             EEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCC
Confidence            444444444 3344333322  444444444444444444443       333444444444444422222233344444


Q ss_pred             EEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCccccc-------CCCCCcEEEccCCcCCCCCCcccc--CCCCC
Q 003888          423 ILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFF-------HCSSLVTLDLSYNRLNGSIPNWVD--GLSQL  493 (788)
Q Consensus       423 ~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L  493 (788)
                      +|++++|.++                        .+|...+.       ++++|+.|++++|+++ .+|..+.  .+++|
T Consensus       461 ~L~Ls~N~l~------------------------~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L  515 (636)
T 4eco_A          461 SINLMGNMLT------------------------EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL  515 (636)
T ss_dssp             EEECCSSCCS------------------------BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC
T ss_pred             EEECCCCCCC------------------------CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCc
Confidence            4444444433                        22222122       2236666666666665 3444444  56666


Q ss_pred             CEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccc
Q 003888          494 SHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHEN  573 (788)
Q Consensus       494 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  573 (788)
                      ++|++++|++++ +|..+..+++|+.|++++|+                                               
T Consensus       516 ~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~-----------------------------------------------  547 (636)
T 4eco_A          516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR-----------------------------------------------  547 (636)
T ss_dssp             CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB-----------------------------------------------
T ss_pred             CEEECCCCCCCC-cChhhhcCCCCCEEECCCCc-----------------------------------------------
Confidence            666666666664 55555566666666665553                                               


Q ss_pred             eeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccc
Q 003888          574 FEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG  653 (788)
Q Consensus       574 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  653 (788)
                                             ++++|++.+.+|..+..+++|++|+|++|+++ .+|..+.  ++|++|++++|++..
T Consensus       548 -----------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          548 -----------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             -----------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCE
T ss_pred             -----------------------ccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcc
Confidence                                   23567788889999999999999999999995 4566655  799999999998875


Q ss_pred             cC
Q 003888          654 KI  655 (788)
Q Consensus       654 ~~  655 (788)
                      ..
T Consensus       602 ~~  603 (636)
T 4eco_A          602 ID  603 (636)
T ss_dssp             EE
T ss_pred             cc
Confidence            44

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.1e-42  Score=399.60  Aligned_cols=531  Identities=22%  Similarity=0.223  Sum_probs=333.4

Q ss_pred             eecCCCCCCCCCccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCc
Q 003888            9 LVRGQGFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRG   88 (788)
Q Consensus         9 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~   88 (788)
                      +||. .+.  +++++|||  ++|++++..+.+|. ++++|++|||++|.+    ..+++.+|.++++|++|+|++|++++
T Consensus        45 ~vP~-~lp--~~~~~LdL--s~N~i~~l~~~~f~-~l~~L~~L~Ls~N~i----~~i~~~~f~~L~~L~~L~Ls~N~l~~  114 (635)
T 4g8a_A           45 KIPD-NLP--FSTKNLDL--SFNPLRHLGSYSFF-SFPELQVLDLSRCEI----QTIEDGAYQSLSHLSTLILTGNPIQS  114 (635)
T ss_dssp             SCCS-SSC--TTCCEEEC--TTSCCCEECTTTTT-TCTTCCEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred             ccCC-CCC--cCCCEEEe--eCCCCCCCCHHHHh-CCCCCCEEECCCCcC----CCcChhHhcCCCCCCEEEccCCcCCC
Confidence            5674 333  38999999  99999988778899 999999999999999    67887789999999999999999997


Q ss_pred             CCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCccccccccccc
Q 003888           89 SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESH  168 (788)
Q Consensus        89 ~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  168 (788)
                      ..+.+|.++++|++|+|++|+++ .++...|+++++|++|++++|.++.......++++++|++|++++|.+.+.....+
T Consensus       115 l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l  193 (635)
T 4g8a_A          115 LALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL  193 (635)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred             CCHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccc
Confidence            77788999999999999999998 78776899999999999999999754444578899999999999999886544332


Q ss_pred             cCCCCcc-cccEEEccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCC
Q 003888          169 SLTAPNF-QLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHS  247 (788)
Q Consensus       169 ~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~  247 (788)
                      ....... ....+++ ..+.+.. ++........++.+++.++.....++...+..++.++...+..+.....       
T Consensus       194 ~~L~~l~~~~~~~~l-s~n~l~~-i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~-------  264 (635)
T 4g8a_A          194 RVLHQMPLLNLSLDL-SLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE-------  264 (635)
T ss_dssp             HHHHTCTTCCCEEEC-TTCCCCE-ECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTS-------
T ss_pred             cchhhhhhhhhhhhc-ccCcccc-cCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccc-------
Confidence            2111111 2233444 3322222 2222223334455555555444434444444555555444432211110       


Q ss_pred             CCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCC---CCcccccCCCCCCEEEcccCcCCCccchHHHhcCCC
Q 003888          248 HRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDS---SIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVN  324 (788)
Q Consensus       248 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~---~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~  324 (788)
                                 ..+. ............+....+..+....   .....+..+.+++.+++.++.+. .++...  ...+
T Consensus       265 -----------~~l~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~--~~~~  329 (635)
T 4g8a_A          265 -----------GNLE-KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE-RVKDFS--YNFG  329 (635)
T ss_dssp             -----------CCCS-CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEE-ECGGGG--SCCC
T ss_pred             -----------cccc-cccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccc-cccccc--cchh
Confidence                       0011 0111111113344444444333221   22334566778888888888776 444432  4678


Q ss_pred             CCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCC--CcccccCCCCCCEEeC
Q 003888          325 LEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGK--IPRWLGNLTGLKHIIM  402 (788)
Q Consensus       325 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~l  402 (788)
                      ++.|++.+|.+......   .++.|+.+++.+|.....  .....+++|+.+++++|.+...  .+..+..+.+|+.+++
T Consensus       330 L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~  404 (635)
T 4g8a_A          330 WQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDL  404 (635)
T ss_dssp             CSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEEC
T ss_pred             hhhhhcccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhc
Confidence            89999998888765443   457888999998887633  2345678888888888877522  2333444555666666


Q ss_pred             CCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCC
Q 003888          403 PENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGS  482 (788)
Q Consensus       403 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  482 (788)
                      ..+.... .+..+..+++|+.++++.++...                       ..+...|..+++++.++++.|.+.+.
T Consensus       405 ~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~-----------------------~~~~~~~~~l~~l~~l~ls~n~l~~~  460 (635)
T 4g8a_A          405 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQ-----------------------MSEFSVFLSLRNLIYLDISHTHTRVA  460 (635)
T ss_dssp             CSCSEEE-ECSCCTTCTTCCEEECTTSEEES-----------------------TTSSCTTTTCTTCCEEECTTSCCEEC
T ss_pred             ccccccc-ccccccccccccchhhhhccccc-----------------------cccccccccccccccccccccccccc
Confidence            6555442 23334445555555555444331                       22222244555555555555555555


Q ss_pred             CCccccCCCCCCEEEccCCcCc-cccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCccccccccc
Q 003888          483 IPNWVDGLSQLSHLILGHNNLE-GEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDS  561 (788)
Q Consensus       483 ~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  561 (788)
                      .+..+..+++|+.|++++|.+. +..|..|..++                                              
T Consensus       461 ~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~----------------------------------------------  494 (635)
T 4g8a_A          461 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR----------------------------------------------  494 (635)
T ss_dssp             CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT----------------------------------------------
T ss_pred             cccccccchhhhhhhhhhcccccccCchhhhhcc----------------------------------------------
Confidence            5555555555555555555432 23344444444                                              


Q ss_pred             ccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCC
Q 003888          562 MMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHI  641 (788)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  641 (788)
                                                    +|+.|+|++|++++..|..|.++++|++|+|++|+|+++.+..|+++++|
T Consensus       495 ------------------------------~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L  544 (635)
T 4g8a_A          495 ------------------------------NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL  544 (635)
T ss_dssp             ------------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTC
T ss_pred             ------------------------------ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCC
Confidence                                          45555555555555566666666777777777777776666667777777


Q ss_pred             CEEECcCCcccccCCccccCC-CCCCEEEccCCcCcccC
Q 003888          642 ESLDLSYNKLNGKIPHQLVEL-KTLAVFSVAYNNLSGEI  679 (788)
Q Consensus       642 ~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~l~~N~l~~~~  679 (788)
                      ++|+|++|++++..|..+..+ ++|++|++++|++.|.+
T Consensus       545 ~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C  583 (635)
T 4g8a_A          545 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  583 (635)
T ss_dssp             CEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred             CEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence            777777777776666666665 46777777777776643

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.8e-43  Score=409.72  Aligned_cols=354  Identities=21%  Similarity=0.251  Sum_probs=223.8

Q ss_pred             Cccccc--CCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCcc-CCC-cCcccC-------cCCCCCCEEeccCCc
Q 003888          290 IPSSFG--NMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNN-LKG-HMFSRN-------FNLTNLRSLQLEGNH  358 (788)
Q Consensus       290 ~~~~~~--~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~-------~~l~~L~~L~l~~n~  358 (788)
                      +|..++  ++++|++|++++|.+.+.+|..+. ++++|++|++++|+ +++ ..|..+       ..+++|++|++++|.
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~-~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~  559 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN  559 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG-GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHh-CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence            444444  555555555555555445554433 45555555555554 444 233222       233355555555555


Q ss_pred             CCCcCCc--cccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCC-ccEEEccCCcCCCCC
Q 003888          359 LEGEIPQ--SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYS-LQILDISDNNISGSL  435 (788)
Q Consensus       359 l~~~~~~--~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~  435 (788)
                      ++ .+|.  .+.++++|+.|++++|.++ .+| .|..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.++ ..
T Consensus       560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l  634 (876)
T 4ecn_A          560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI  634 (876)
T ss_dssp             CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred             CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence            55 4454  5555555555555555555 444 5555555555555555555 44555555555 555555555555 33


Q ss_pred             CCCCCC---CCccEEEccCcccccccCccc--cc--CCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccC
Q 003888          436 PSCFHP---LSIEQVHLSKNMLHGQLKRGT--FF--HCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVP  508 (788)
Q Consensus       436 ~~~~~~---~~L~~L~l~~n~~~~~~~~~~--~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  508 (788)
                      |..+..   .+|+.|++++|.+.+.+|...  +.  .+++|+.|++++|.++...+..+..+++|+.|++++|+++...+
T Consensus       635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~  714 (876)
T 4ecn_A          635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE  714 (876)
T ss_dssp             CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCT
T ss_pred             chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccCh
Confidence            333321   225556666665554433210  11  34578888888888884433344578888888888888884333


Q ss_pred             cccCC-------CCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccc
Q 003888          509 VQLCE-------LNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNI  581 (788)
Q Consensus       509 ~~l~~-------l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  581 (788)
                      ..+..       +++|+.|++++|++. .+|..+..                                            
T Consensus       715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~--------------------------------------------  749 (876)
T 4ecn_A          715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA--------------------------------------------  749 (876)
T ss_dssp             TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST--------------------------------------------
T ss_pred             HHhccccccccccCCccEEECCCCCCc-cchHHhhh--------------------------------------------
Confidence            33332       238899999999887 34443320                                            


Q ss_pred             eeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCC------CcCCccCCccccCCCCCCEEECcCCcccccC
Q 003888          582 AYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSH------NNLTGLIPSTFSNLKHIESLDLSYNKLNGKI  655 (788)
Q Consensus       582 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  655 (788)
                            ..+++|+.|+|++|++++ +|..+..+++|+.|+|++      |++.+.+|..|..+++|++|+|++|++ +.+
T Consensus       750 ------~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~I  821 (876)
T 4ecn_A          750 ------TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKV  821 (876)
T ss_dssp             ------TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBC
T ss_pred             ------ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-Ccc
Confidence                  014588999999999986 688888999999999876      888889999999999999999999999 578


Q ss_pred             CccccCCCCCCEEEccCCcCcccCCCcccccCCCCccccCCCCCCC--CCC
Q 003888          656 PHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLC--GLP  704 (788)
Q Consensus       656 p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~gn~~~c--~~~  704 (788)
                      |..+.  ++|+.|++++|++....+..+..........+.+|+..+  +|+
T Consensus       822 p~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~  870 (876)
T 4ecn_A          822 DEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD  870 (876)
T ss_dssp             CSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred             CHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCC
Confidence            87765  699999999999987777666655555566667776554  775

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.9e-43  Score=397.02  Aligned_cols=388  Identities=19%  Similarity=0.164  Sum_probs=200.8

Q ss_pred             EEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCCCCCE
Q 003888           23 HLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRI  102 (788)
Q Consensus        23 ~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  102 (788)
                      +|++  ++++++. +|..+.   ++|++|++++|.+    ..+++.+|.++++|++|+|++|++++..|.+|+++++|++
T Consensus         4 ~l~l--s~n~l~~-ip~~~~---~~L~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~   73 (520)
T 2z7x_B            4 LVDR--SKNGLIH-VPKDLS---QKTTILNISQNYI----SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEY   73 (520)
T ss_dssp             EEEC--TTSCCSS-CCCSCC---TTCSEEECCSSCC----CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCE
T ss_pred             eEec--CCCCccc-cccccc---ccccEEECCCCcc----cccChhhccccccccEEecCCCccCCcChHHhhcccCCCE
Confidence            4555  5555542 333222   4555555555555    3333334555555555555555555444555555555555


Q ss_pred             EECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCccccccccccccCCCCcccccEEEc
Q 003888          103 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSL  182 (788)
Q Consensus       103 L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l  182 (788)
                      |+|++|+++ .+|. .  .+++|++|++++|.+++......++++++|++|++++|                        
T Consensus        74 L~Ls~N~l~-~lp~-~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n------------------------  125 (520)
T 2z7x_B           74 LDLSHNKLV-KISC-H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT------------------------  125 (520)
T ss_dssp             EECCSSCCC-EEEC-C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES------------------------
T ss_pred             EecCCCcee-ecCc-c--ccCCccEEeccCCccccccchhhhccCCcceEEEecCc------------------------
Confidence            555555554 4554 1  45555555555555543111123444444444444444                        


Q ss_pred             cCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCC--CEEEcCCCcc--cccCccCcCCCC-CccEEEcc
Q 003888          183 SSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKL--RQLYLVNDSL--TGPFRLPIHSHR-WLRFLDVS  257 (788)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L--~~L~L~~~~l--~~~~~~~l~~~~-~L~~L~L~  257 (788)
                                                  .+.+.    .+..+++|  ++|++++|.+  ++..+..+..+. +...++++
T Consensus       126 ----------------------------~l~~~----~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~  173 (520)
T 2z7x_B          126 ----------------------------HLEKS----SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP  173 (520)
T ss_dssp             ----------------------------SCCGG----GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred             ----------------------------ccchh----hccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence                                        43321    11233444  5555555554  333344443333 22245566


Q ss_pred             cCcCcccCChhhhhcCCCCcEEEcccCc-------CCCCCcccccCCCCCCEEEcccCcCCCccchHHHh--cCCCCCEE
Q 003888          258 NNNFQGHIPVEIGDILPSLISFNISMNA-------LDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAV--SCVNLEFL  328 (788)
Q Consensus       258 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~-------~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~--~l~~L~~L  328 (788)
                      +|.+.+.++...+..+++|+.+++++|.       +.+.++ .+..+++|+.|++++|.+.+..+..+..  ..++|++|
T Consensus       174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L  252 (520)
T 2z7x_B          174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF  252 (520)
T ss_dssp             SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred             cCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence            6666555555555556666666666665       333333 4666677777777666655332222211  13455555


Q ss_pred             EccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCc-ccccCC---CCCCEEeCCC
Q 003888          329 ALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIP-RWLGNL---TGLKHIIMPE  404 (788)
Q Consensus       329 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~-~~~~~l---~~L~~L~l~~  404 (788)
                      ++++|++++..+..+...                   ....+++|+.+++++|.+  ..| ..+..+   ++|+.|++++
T Consensus       253 ~l~~n~l~~~~p~~~~~~-------------------~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~  311 (520)
T 2z7x_B          253 SISNVKLQGQLDFRDFDY-------------------SGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSG  311 (520)
T ss_dssp             EEEEEEEESCCCCCCCCC-------------------CSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEES
T ss_pred             EeecccccCccccchhhc-------------------ccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCC
Confidence            555555554444433000                   004445555555555544  222 222222   3455555555


Q ss_pred             CcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCC--C
Q 003888          405 NHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNG--S  482 (788)
Q Consensus       405 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~  482 (788)
                      |.+....  .+..+++|++|++++|.+++..+.                       . +..+++|++|++++|++++  .
T Consensus       312 n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~-----------------------~-~~~l~~L~~L~L~~N~l~~l~~  365 (520)
T 2z7x_B          312 TRMVHML--CPSKISPFLHLDFSNNLLTDTVFE-----------------------N-CGHLTELETLILQMNQLKELSK  365 (520)
T ss_dssp             SCCCCCC--CCSSCCCCCEEECCSSCCCTTTTT-----------------------T-CCCCSSCCEEECCSSCCCBHHH
T ss_pred             Ccccccc--chhhCCcccEEEeECCccChhhhh-----------------------h-hccCCCCCEEEccCCccCcccc
Confidence            5544221  114566667777777666542221                       1 4556677777777777765  3


Q ss_pred             CCccccCCCCCCEEEccCCcCccccC-cccCCCCCCCEEEccCCcCC
Q 003888          483 IPNWVDGLSQLSHLILGHNNLEGEVP-VQLCELNQLQLLDLSNNNLH  528 (788)
Q Consensus       483 ~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i~  528 (788)
                      .|..+..+++|++|++++|++++.+| ..+..+++|+.|++++|+++
T Consensus       366 ~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~  412 (520)
T 2z7x_B          366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT  412 (520)
T ss_dssp             HHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred             chHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC
Confidence            45667788888888888888886344 34677777777777777765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.5e-43  Score=392.74  Aligned_cols=452  Identities=17%  Similarity=0.156  Sum_probs=351.8

Q ss_pred             CCCcccceeecCCCCCCCCCccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEE
Q 003888            1 MFDCKVNGLVRGQGFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELY   80 (788)
Q Consensus         1 ~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~   80 (788)
                      +++|+++ .+|. .+.  ++|++|++  ++|.+++..+..+. ++++|++|++++|.+    ..+++.+|+++++|++|+
T Consensus         7 ls~n~l~-~ip~-~~~--~~L~~L~L--s~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~   75 (520)
T 2z7x_B            7 RSKNGLI-HVPK-DLS--QKTTILNI--SQNYISELWTSDIL-SLSKLRILIISHNRI----QYLDISVFKFNQELEYLD   75 (520)
T ss_dssp             CTTSCCS-SCCC-SCC--TTCSEEEC--CSSCCCCCCHHHHT-TCTTCCEEECCSSCC----CEEEGGGGTTCTTCCEEE
T ss_pred             cCCCCcc-cccc-ccc--ccccEEEC--CCCcccccChhhcc-ccccccEEecCCCcc----CCcChHHhhcccCCCEEe
Confidence            3567777 5885 454  89999999  99999988888999 999999999999999    556556899999999999


Q ss_pred             cCCCCCCcCCChhhcCCCCCCEEECCCCcCcC-cCChhhhcCCCCCCEEECcCccccccCCccccccCCCC--cEEEccC
Q 003888           81 IDNNDLRGSLPWCLANMTSLRILDVSSNQLTG-SISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRL--KIFDAAN  157 (788)
Q Consensus        81 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~-~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L--~~L~l~~  157 (788)
                      |++|+++ .+|..  .+++|++|++++|.+++ .+|. .++++++|++|++++|.+.+    ..+..+++|  ++|++++
T Consensus        76 Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~  147 (520)
T 2z7x_B           76 LSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVL  147 (520)
T ss_dssp             CCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEE
T ss_pred             cCCCcee-ecCcc--ccCCccEEeccCCccccccchh-hhccCCcceEEEecCcccch----hhccccccceeeEEEeec
Confidence            9999999 56655  89999999999999985 4666 89999999999999999875    256777777  9999999


Q ss_pred             ccccccccccccCCCCcccccEEEccCCCCCCCCcCccccCCC-CCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCc
Q 003888          158 NEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQH-DLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDS  236 (788)
Q Consensus       158 n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  236 (788)
                      |.+.+                          .+..|..+..+. ....+++++|.+.+.++...+..+++|+.|++++|.
T Consensus       148 n~l~~--------------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  201 (520)
T 2z7x_B          148 GETYG--------------------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL  201 (520)
T ss_dssp             CTTTT--------------------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECC
T ss_pred             ccccc--------------------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccc
Confidence            87721                          111223333322 233456777777777776666678888888888876


Q ss_pred             -------ccccCccCcCCCCCccEEEcccCcCcccCChhhhh--cCCCCcEEEcccCcCCCCCcccc-----cCCCCCCE
Q 003888          237 -------LTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGD--ILPSLISFNISMNALDSSIPSSF-----GNMNFLQI  302 (788)
Q Consensus       237 -------l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~--~l~~L~~L~L~~n~~~~~~~~~~-----~~l~~L~~  302 (788)
                             +.+.++ .+..+++|+.|++++|.+++..+..+..  ..++|++|++++|.+++.+|..+     .++++|+.
T Consensus       202 ~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~  280 (520)
T 2z7x_B          202 EDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI  280 (520)
T ss_dssp             STTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEE
T ss_pred             cccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEe
Confidence                   555444 6778889999999998877544333321  14689999999999988888888     88999999


Q ss_pred             EEcccCcCCCccc-hHHHh--cCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEcc
Q 003888          303 LDLSNNQLTGEIP-EHLAV--SCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLN  379 (788)
Q Consensus       303 L~l~~n~i~~~i~-~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~  379 (788)
                      +++++|.+  .+| ..+..  ...+|+.|++++|.+.....  ...+++|++|++++|++++..|..+..+++|++|+++
T Consensus       281 l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  356 (520)
T 2z7x_B          281 HQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ  356 (520)
T ss_dssp             EEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECC
T ss_pred             ccccccce--ecchhhhhcccccCceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEcc
Confidence            99999988  566 33332  12679999999998876432  2577889999999999888788888888999999999


Q ss_pred             CCcCCC--CCcccccCCCCCCEEeCCCCcccCCccc-cccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCccccc
Q 003888          380 NNSLSG--KIPRWLGNLTGLKHIIMPENHLEGPIPV-GFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHG  456 (788)
Q Consensus       380 ~n~i~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~  456 (788)
                      +|.+++  ..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+++.                      
T Consensus       357 ~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~----------------------  414 (520)
T 2z7x_B          357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT----------------------  414 (520)
T ss_dssp             SSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGG----------------------
T ss_pred             CCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcc----------------------
Confidence            998875  3456678888888888888888874444 467778888888888877532                      


Q ss_pred             ccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCC
Q 003888          457 QLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHG  529 (788)
Q Consensus       457 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~  529 (788)
                       ++.. +.  ++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++..
T Consensus       415 -~~~~-l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          415 -IFRC-LP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             -GGGS-CC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             -hhhh-hc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence             2222 21  68999999999998 677777789999999999999995544458889999999999999874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=8e-43  Score=404.29  Aligned_cols=383  Identities=20%  Similarity=0.277  Sum_probs=238.0

Q ss_pred             CcCCCCCchhHhhcCCCCCEEEcCCCcccc-----------------cCccCcC--CCCCccEEEcccCcCcccCChhhh
Q 003888          210 VNMDGEFPNWLLENNTKLRQLYLVNDSLTG-----------------PFRLPIH--SHRWLRFLDVSNNNFQGHIPVEIG  270 (788)
Q Consensus       210 ~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-----------------~~~~~l~--~~~~L~~L~L~~n~i~~~~~~~~~  270 (788)
                      |.+.+ +|..+ .++++|+.|+|++|.+++                 .+|..++  .+++|++|++++|.+.+.+|..+.
T Consensus       435 N~L~~-IP~~l-~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~  512 (876)
T 4ecn_A          435 NRITF-ISKAI-QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY  512 (876)
T ss_dssp             CEEEE-ECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred             Ccccc-hhHHH-hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence            34444 44443 455555555555555555                 3566655  777777777777777667776555


Q ss_pred             hcCCCCcEEEcccCc-CCC-CCcccccCC-------CCCCEEEcccCcCCCccch--HHHhcCCCCCEEEccCccCCCcC
Q 003888          271 DILPSLISFNISMNA-LDS-SIPSSFGNM-------NFLQILDLSNNQLTGEIPE--HLAVSCVNLEFLALSNNNLKGHM  339 (788)
Q Consensus       271 ~~l~~L~~L~L~~n~-~~~-~~~~~~~~l-------~~L~~L~l~~n~i~~~i~~--~~~~~l~~L~~L~L~~n~i~~~~  339 (788)
                      . +++|++|++++|+ +++ .+|..++++       ++|++|++++|.++ .+|.  .+ ..+++|++|++++|+++. .
T Consensus       513 ~-L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l-~~L~~L~~L~Ls~N~l~~-l  588 (876)
T 4ecn_A          513 D-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASL-QKMVKLGLLDCVHNKVRH-L  588 (876)
T ss_dssp             G-CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHH-TTCTTCCEEECTTSCCCB-C
T ss_pred             C-CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhh-hcCCCCCEEECCCCCccc-c
Confidence            4 6777777777776 665 556544433       47777777777777 7776  44 367777777777777773 3


Q ss_pred             cccCcCCCCCCEEeccCCcCCCcCCccccCCCC-CCEEEccCCcCCCCCcccccCCCC--CCEEeCCCCcccCCcccc--
Q 003888          340 FSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSS-LEGLYLNNNSLSGKIPRWLGNLTG--LKHIIMPENHLEGPIPVG--  414 (788)
Q Consensus       340 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~i~~~~~~~~~~l~~--L~~L~l~~n~~~~~~~~~--  414 (788)
                      + .+..+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..++.  |+.|++++|.+.+..|..  
T Consensus       589 p-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~  665 (876)
T 4ecn_A          589 E-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC  665 (876)
T ss_dssp             C-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSS
T ss_pred             h-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchh
Confidence            3 6677777777777777777 66767777777 788888777777 56666665543  777888877776654422  


Q ss_pred             -cc--CCCCccEEEccCCcCCCCCCCCC-CCCCccEEEccCcccccccCccccc-------CCCCCcEEEccCCcCCCCC
Q 003888          415 -FC--QLYSLQILDISDNNISGSLPSCF-HPLSIEQVHLSKNMLHGQLKRGTFF-------HCSSLVTLDLSYNRLNGSI  483 (788)
Q Consensus       415 -~~--~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~  483 (788)
                       +.  .+++|+.|++++|.+.......+ .+++|+.|++++|.+. .+|...+.       ++++|+.|+|++|+++ .+
T Consensus       666 ~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~l  743 (876)
T 4ecn_A          666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SL  743 (876)
T ss_dssp             CTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CC
T ss_pred             hhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cc
Confidence             11  23467777777776653222211 1233333333333332 22222121       1224444444444444 33


Q ss_pred             Ccccc--CCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCccccccccc
Q 003888          484 PNWVD--GLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDS  561 (788)
Q Consensus       484 ~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  561 (788)
                      |..+.  .+++|+.|++++|++++ +|..+..+++|+.|++++|+                                   
T Consensus       744 p~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~-----------------------------------  787 (876)
T 4ecn_A          744 SDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR-----------------------------------  787 (876)
T ss_dssp             CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB-----------------------------------
T ss_pred             hHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC-----------------------------------
Confidence            33333  44444444444444443 34444444444444444442                                   


Q ss_pred             ccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCC
Q 003888          562 MMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHI  641 (788)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  641 (788)
                                                         ++++|.+.+.+|..|..+++|+.|+|++|++. .+|..+.  ++|
T Consensus       788 -----------------------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L  829 (876)
T 4ecn_A          788 -----------------------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQL  829 (876)
T ss_dssp             -----------------------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSS
T ss_pred             -----------------------------------CcccccccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCC
Confidence                                               22447888899999999999999999999994 5666655  699


Q ss_pred             CEEECcCCcccccCCccccCCCCCCEEEccCCcCcc
Q 003888          642 ESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSG  677 (788)
Q Consensus       642 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~  677 (788)
                      +.|||++|++....+..+.....+..+.+.+|++..
T Consensus       830 ~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~  865 (876)
T 4ecn_A          830 YILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD  865 (876)
T ss_dssp             CEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred             CEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence            999999999987777777766667777888887664

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.5e-40  Score=373.46  Aligned_cols=391  Identities=18%  Similarity=0.106  Sum_probs=209.2

Q ss_pred             CCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCC
Q 003888           45 MPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTS  124 (788)
Q Consensus        45 l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~  124 (788)
                      +...+++|++++.+    ..+|. .+.  ++|++|++++|.+++..|.+|.++++|++|++++|.++ .++...|.++++
T Consensus        30 ~~~~~~l~ls~~~L----~~ip~-~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~  101 (562)
T 3a79_B           30 NELESMVDYSNRNL----THVPK-DLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQD  101 (562)
T ss_dssp             ---CCEEECTTSCC----CSCCT-TSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTT
T ss_pred             cCCCcEEEcCCCCC----ccCCC-CCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCC
Confidence            34446777777766    34554 232  56777777777776666666777777777777777776 343336667777


Q ss_pred             CCEEECcCccccccCCccccccCCCCcEEEccCccccccccccccCCCCcccccEEEccCCCCCCCCcCccccCCCCCCE
Q 003888          125 IEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLED  204 (788)
Q Consensus       125 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  204 (788)
                      |++|++++|.++ .++..   .+++|++|++++|.+.+                           ..+|..+..+++|++
T Consensus       102 L~~L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~---------------------------l~~p~~~~~l~~L~~  150 (562)
T 3a79_B          102 LEYLDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDV---------------------------LPVCKEFGNLTKLTF  150 (562)
T ss_dssp             CCEEECTTSCCC-EECSC---CCTTCSEEECCSSCCSB---------------------------CCCCGGGGGCTTCCE
T ss_pred             CCEEECCCCcCC-ccCcc---ccccCCEEECCCCCccc---------------------------cCchHhhcccCcccE
Confidence            777777777665 33422   56666666666665432                           012344555556666


Q ss_pred             EEcCCCcCCCCCchhHhhcCCCC--CEEEcCCCcc--cccCccCcCCCC-CccEEEcccCcCcccCChhhhhcCCCCcEE
Q 003888          205 VRLSHVNMDGEFPNWLLENNTKL--RQLYLVNDSL--TGPFRLPIHSHR-WLRFLDVSNNNFQGHIPVEIGDILPSLISF  279 (788)
Q Consensus       205 L~l~~~~~~~~~~~~~~~~l~~L--~~L~L~~~~l--~~~~~~~l~~~~-~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L  279 (788)
                      |++++|.+.+...    ..+++|  ++|++++|.+  ++..+..+..+. ..-.+++++|.+.+.++...+..+++|+.+
T Consensus       151 L~L~~n~l~~~~~----~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L  226 (562)
T 3a79_B          151 LGLSAAKFRQLDL----LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS  226 (562)
T ss_dssp             EEEECSBCCTTTT----GGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEE
T ss_pred             EecCCCccccCch----hhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEe
Confidence            6666655543211    223333  5555555555  444444433322 111345555555544444444444555555


Q ss_pred             EcccCcCC----CCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEecc
Q 003888          280 NISMNALD----SSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLE  355 (788)
Q Consensus       280 ~L~~n~~~----~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~  355 (788)
                      ++++|...    ......+.++++|+.++++++.+.+.....+.                    +  ....++|++|+++
T Consensus       227 ~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~--------------------~--~~~~~~L~~L~l~  284 (562)
T 3a79_B          227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF--------------------Q--FFWPRPVEYLNIY  284 (562)
T ss_dssp             EEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHH--------------------H--HHTTSSEEEEEEE
T ss_pred             cccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHH--------------------H--hhhcccccEEEEe
Confidence            55554311    01112344445555555544443321111100                    0  0112355555555


Q ss_pred             CCcCCCcCCccc-----cCCCCCCEEEccCCcCCCCCc-ccccC---CCCCCEEeCCCCcccCCccccccCCCCccEEEc
Q 003888          356 GNHLEGEIPQSL-----SKCSSLEGLYLNNNSLSGKIP-RWLGN---LTGLKHIIMPENHLEGPIPVGFCQLYSLQILDI  426 (788)
Q Consensus       356 ~n~l~~~~~~~l-----~~l~~L~~L~L~~n~i~~~~~-~~~~~---l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  426 (788)
                      +|.+++.+|..+     ..++.|+.++++.+.+  ..| ..+..   ..+|++|++++|.+....  ....+++|++|++
T Consensus       285 ~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l  360 (562)
T 3a79_B          285 NLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNF  360 (562)
T ss_dssp             EEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEEC
T ss_pred             ccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEEC
Confidence            555554444444     4444444444444444  122 11111   245666666666654221  1245677777777


Q ss_pred             cCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCC--CCccccCCCCCCEEEccCCcCc
Q 003888          427 SDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGS--IPNWVDGLSQLSHLILGHNNLE  504 (788)
Q Consensus       427 ~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~  504 (788)
                      ++|.+++..+.                       . +..+++|+.|++++|++++.  .|..+..+++|++|++++|+++
T Consensus       361 ~~n~l~~~~~~-----------------------~-~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~  416 (562)
T 3a79_B          361 TQNVFTDSVFQ-----------------------G-CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN  416 (562)
T ss_dssp             CSSCCCTTTTT-----------------------T-CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred             CCCccccchhh-----------------------h-hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence            77776643221                       1 55667777777777777753  2356778888888888888888


Q ss_pred             c-ccCcccCCCCCCCEEEccCCcCC
Q 003888          505 G-EVPVQLCELNQLQLLDLSNNNLH  528 (788)
Q Consensus       505 ~-~~~~~l~~l~~L~~L~Ls~n~i~  528 (788)
                      + ..+..+..+++|+.|++++|+++
T Consensus       417 ~~~~~~~~~~l~~L~~L~l~~n~l~  441 (562)
T 3a79_B          417 SHAYDRTCAWAESILVLNLSSNMLT  441 (562)
T ss_dssp             SCCSSCCCCCCTTCCEEECCSSCCC
T ss_pred             CccChhhhcCcccCCEEECCCCCCC
Confidence            6 33345777777777777777765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=7.2e-40  Score=370.89  Aligned_cols=465  Identities=18%  Similarity=0.148  Sum_probs=321.0

Q ss_pred             CCCCCccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhc
Q 003888           16 PHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLA   95 (788)
Q Consensus        16 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~   95 (788)
                      ..+...+++++  +++++++ +|..+.   ++|++|++++|.+    ..+++.+|.++++|++|+|++|++++..|.+|.
T Consensus        28 ~~~~~~~~l~l--s~~~L~~-ip~~~~---~~L~~L~Ls~N~i----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~   97 (562)
T 3a79_B           28 FSNELESMVDY--SNRNLTH-VPKDLP---PRTKALSLSQNSI----SELRMPDISFLSELRVLRLSHNRIRSLDFHVFL   97 (562)
T ss_dssp             -----CCEEEC--TTSCCCS-CCTTSC---TTCCEEECCSSCC----CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTT
T ss_pred             cccCCCcEEEc--CCCCCcc-CCCCCC---CCcCEEECCCCCc----cccChhhhccCCCccEEECCCCCCCcCCHHHhC
Confidence            44555689999  9999885 565443   7999999999999    566666899999999999999999988899999


Q ss_pred             CCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCccccccccccccCCCCcc
Q 003888           96 NMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNF  175 (788)
Q Consensus        96 ~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~  175 (788)
                      ++++|++||+++|.++ .+|. .  .+++|++|++++|.+.+......++++++|++|++++|.+....   +.. .+..
T Consensus        98 ~l~~L~~L~Ls~N~l~-~lp~-~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~-l~~L  169 (562)
T 3a79_B           98 FNQDLEYLDVSHNRLQ-NISC-C--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLP-VAHL  169 (562)
T ss_dssp             TCTTCCEEECTTSCCC-EECS-C--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGG-GTTS
T ss_pred             CCCCCCEEECCCCcCC-ccCc-c--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhh-hhhc
Confidence            9999999999999998 8988 3  89999999999999875322357899999999999999886521   111 1111


Q ss_pred             cccEEEccCCCCC--CCCcCccccCCC-CCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCccc----ccCccCcCCC
Q 003888          176 QLQALSLSSGYGD--GVTFPKFLYHQH-DLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLT----GPFRLPIHSH  248 (788)
Q Consensus       176 ~L~~L~l~~~~~~--~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~----~~~~~~l~~~  248 (788)
                      +|+.|++ .++.+  .+..|..+..+. ..-.++++.|.+.+.++...+..+++|+.+++++|...    ......+..+
T Consensus       170 ~L~~L~L-~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l  248 (562)
T 3a79_B          170 HLSCILL-DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRG  248 (562)
T ss_dssp             CEEEEEE-EESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSC
T ss_pred             eeeEEEe-ecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhcc
Confidence            4488888 55555  555666665543 11245677777777666665566777888888777411    0112235566


Q ss_pred             CCccEEEcccCcCcccCChhhh--hcCCCCcEEEcccCcCCCCCcccc-----cCCCCCCEEEcccCcCCCccchHHHhc
Q 003888          249 RWLRFLDVSNNNFQGHIPVEIG--DILPSLISFNISMNALDSSIPSSF-----GNMNFLQILDLSNNQLTGEIPEHLAVS  321 (788)
Q Consensus       249 ~~L~~L~L~~n~i~~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~i~~~i~~~~~~~  321 (788)
                      ++|+.++++++.+.+.......  ...++|++|++++|.+++.+|..+     .+++.|+.+++..+.+  .+|......
T Consensus       249 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~  326 (562)
T 3a79_B          249 PTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYS  326 (562)
T ss_dssp             SSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHH
T ss_pred             CcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhh
Confidence            7777777777765532221111  113478888888888877777765     5566666666666665  445322111


Q ss_pred             ---CCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCC--CcccccCCCC
Q 003888          322 ---CVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGK--IPRWLGNLTG  396 (788)
Q Consensus       322 ---l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~  396 (788)
                         ..+|++|++++|.+.....  ...+++|++|++++|.+++..|..+.++++|++|++++|.+++.  .|..+..+++
T Consensus       327 ~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~  404 (562)
T 3a79_B          327 VFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS  404 (562)
T ss_dssp             HHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTT
T ss_pred             hhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCC
Confidence               2567788887777654321  24667777777777777766677777777777777777777642  2345666777


Q ss_pred             CCEEeCCCCcccCCcc-ccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEcc
Q 003888          397 LKHIIMPENHLEGPIP-VGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLS  475 (788)
Q Consensus       397 L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~  475 (788)
                      |++|++++|.+.+.+| ..+..+++|++|++++|.++                       +.++.. +.  ++|+.|+++
T Consensus       405 L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~-----------------------~~~~~~-l~--~~L~~L~L~  458 (562)
T 3a79_B          405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT-----------------------GSVFRC-LP--PKVKVLDLH  458 (562)
T ss_dssp             CCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCC-----------------------GGGGSS-CC--TTCSEEECC
T ss_pred             CCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCC-----------------------cchhhh-hc--CcCCEEECC
Confidence            7777777777765333 34566667777777766654                       333222 21  689999999


Q ss_pred             CCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCC
Q 003888          476 YNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGP  530 (788)
Q Consensus       476 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~  530 (788)
                      +|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++...
T Consensus       459 ~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~  512 (562)
T 3a79_B          459 NNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  512 (562)
T ss_dssp             SSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred             CCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence            99988 4666666889999999999999855444588899999999999988753

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.2e-39  Score=357.79  Aligned_cols=371  Identities=21%  Similarity=0.219  Sum_probs=287.5

Q ss_pred             EEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccC
Q 003888          253 FLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSN  332 (788)
Q Consensus       253 ~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~  332 (788)
                      .++.+++.++ .+|. +   .++|++|++++|.+++..|..|+++++|++|++++|.+.+.++...+.++++|++|++++
T Consensus        14 ~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           14 NAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             EEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             ccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            4566666665 5665 2   368888888888888777888888888888888888887677666666788888888888


Q ss_pred             ccCCCcCcccCcCCCCCCEEeccCCcCCCcCCcc--ccCCCCCCEEEccCCcCCCCCccc-ccCCCCCCEEeCCCCcccC
Q 003888          333 NNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQS--LSKCSSLEGLYLNNNSLSGKIPRW-LGNLTGLKHIIMPENHLEG  409 (788)
Q Consensus       333 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~l~~n~~~~  409 (788)
                      |++++..+..+.++++|++|++++|.+++..+..  +..+++|++|++++|.+++..|.. +..+++|++|++++|.+.+
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            8888887888888888888888888888644443  788888888888888888776665 7788888888888888887


Q ss_pred             CccccccCC--CCccEEEccCCcCCCCCCCC---------CCCCCccEEEccCcccccccCcccccC---CCCCcEEEcc
Q 003888          410 PIPVGFCQL--YSLQILDISDNNISGSLPSC---------FHPLSIEQVHLSKNMLHGQLKRGTFFH---CSSLVTLDLS  475 (788)
Q Consensus       410 ~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~---------~~~~~L~~L~l~~n~~~~~~~~~~~~~---~~~L~~L~L~  475 (788)
                      ..+..+..+  .+|+.|++++|.+.+..+..         +..++|+.|++++|.+.+..+.. +..   .++|+.|+++
T Consensus       169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~~L~~L~l~  247 (455)
T 3v47_A          169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR-FFDAIAGTKIQSLILS  247 (455)
T ss_dssp             CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH-HHHHTTTCCEEEEECT
T ss_pred             cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhh-hhccccccceeeEeec
Confidence            777776655  68888888888887655433         23467888888888876665544 322   3778888888


Q ss_pred             CCcCCCC----------CCccccC--CCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccc
Q 003888          476 YNRLNGS----------IPNWVDG--LSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES  543 (788)
Q Consensus       476 ~n~l~~~----------~~~~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~  543 (788)
                      +|...+.          .+..+.+  .++|++|++++|.+++..+..+..+++|+.|++++|++.+..|..+..      
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------  321 (455)
T 3v47_A          248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG------  321 (455)
T ss_dssp             TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT------
T ss_pred             cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC------
Confidence            8755432          1112222  367888888888888888888888888888888888888766666654      


Q ss_pred             cCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCC
Q 003888          544 SNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLS  623 (788)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  623 (788)
                                                                    +++|+.|++++|.+++..|..|+.+++|++|+|+
T Consensus       322 ----------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  355 (455)
T 3v47_A          322 ----------------------------------------------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS  355 (455)
T ss_dssp             ----------------------------------------------CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred             ----------------------------------------------cccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence                                                          3478888888888888888888888888888888


Q ss_pred             CCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCC
Q 003888          624 HNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPE  681 (788)
Q Consensus       624 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~  681 (788)
                      +|++++..|..|.++++|++|++++|++++..+..+..+++|++|++++|+++|.+|.
T Consensus       356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            8888888888888888888888888888876666778888888888888888888874

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.2e-38  Score=351.89  Aligned_cols=382  Identities=21%  Similarity=0.220  Sum_probs=309.8

Q ss_pred             EEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEccc
Q 003888          204 DVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISM  283 (788)
Q Consensus       204 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~  283 (788)
                      .++.+++.+.. +|. +   .++|++|++++|.+++..+..+..+++|++|++++|.+.+.++...+..+++|++|++++
T Consensus        14 ~~~c~~~~l~~-lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           14 NAICINRGLHQ-VPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             EEECCSSCCSS-CCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             ccCcCCCCccc-CCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            44555554433 444 2   367888899888888888888889999999999999887777766666688999999999


Q ss_pred             CcCCCCCcccccCCCCCCEEEcccCcCCCccchH-HHhcCCCCCEEEccCccCCCcCccc-CcCCCCCCEEeccCCcCCC
Q 003888          284 NALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEH-LAVSCVNLEFLALSNNNLKGHMFSR-NFNLTNLRSLQLEGNHLEG  361 (788)
Q Consensus       284 n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~-~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~  361 (788)
                      |.+++..|..|+++++|++|++++|.+++.++.. .+..+++|++|++++|.+++..+.. +.++++|++|++++|.+++
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            9998888888999999999999999988544443 3446889999999999998876665 7788999999999999988


Q ss_pred             cCCccccCC--CCCCEEEccCCcCCCCCccc--------ccCCCCCCEEeCCCCcccCCccccccCC---CCccEEEccC
Q 003888          362 EIPQSLSKC--SSLEGLYLNNNSLSGKIPRW--------LGNLTGLKHIIMPENHLEGPIPVGFCQL---YSLQILDISD  428 (788)
Q Consensus       362 ~~~~~l~~l--~~L~~L~L~~n~i~~~~~~~--------~~~l~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~l~~  428 (788)
                      ..+..+..+  .+|+.|++++|.+.+..+..        +..+++|++|++++|.+.+..+..+...   ++|+.|++++
T Consensus       169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~  248 (455)
T 3v47_A          169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN  248 (455)
T ss_dssp             CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred             cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence            878777765  68899999999888655443        2356789999999999887777666543   7899999999


Q ss_pred             CcCCCCCCCCCCCCCccEEEccCcccccccCccccc--CCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccc
Q 003888          429 NNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFF--HCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGE  506 (788)
Q Consensus       429 n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  506 (788)
                      |...+.........             . .....+.  ..++|+.|++++|.+++..|..+..+++|++|++++|++++.
T Consensus       249 ~~~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  314 (455)
T 3v47_A          249 SYNMGSSFGHTNFK-------------D-PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI  314 (455)
T ss_dssp             CTTTSCCTTCCSSC-------------C-CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred             ccccccccchhhhc-------------c-CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence            87654322211111             1 1111122  237899999999999998999999999999999999999988


Q ss_pred             cCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeec
Q 003888          507 VPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQ  586 (788)
Q Consensus       507 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (788)
                      .+..|.++++|+.|++++|++.+..|..+..                                                 
T Consensus       315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------------------------------------------------  345 (455)
T 3v47_A          315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN-------------------------------------------------  345 (455)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECGGGGTT-------------------------------------------------
T ss_pred             ChhHhcCcccCCEEECCCCccCCcChhHhcC-------------------------------------------------
Confidence            8999999999999999999997666655544                                                 


Q ss_pred             ccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCC
Q 003888          587 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP  656 (788)
Q Consensus       587 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  656 (788)
                         +++|+.|++++|++++..|..|..+++|++|+|++|+++++.+..|+.+++|++|++++|++++..|
T Consensus       346 ---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          346 ---LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             ---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ---cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence               4589999999999999999999999999999999999999888889999999999999999998877

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=5.6e-38  Score=342.81  Aligned_cols=220  Identities=32%  Similarity=0.395  Sum_probs=124.8

Q ss_pred             CCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEE
Q 003888          249 RWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFL  328 (788)
Q Consensus       249 ~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L  328 (788)
                      ++|++|++++|.++ .++..    .++|++|++++|.+++ +| .++++++|++|++++|+++ .+|..    .++|++|
T Consensus       111 ~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L  178 (454)
T 1jl5_A          111 QSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFI  178 (454)
T ss_dssp             TTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEE
T ss_pred             CCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEE
Confidence            44555555555554 22211    2467777777777765 44 4777777777777777776 45542    3467777


Q ss_pred             EccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCccc
Q 003888          329 ALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLE  408 (788)
Q Consensus       329 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~  408 (788)
                      ++++|++++..  .+.++++|++|++++|.+++ +|..   .++|++|++++|.+. .+| .+..+++|++|++++|++.
T Consensus       179 ~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~  250 (454)
T 1jl5_A          179 AAGNNQLEELP--ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK  250 (454)
T ss_dssp             ECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS
T ss_pred             ECcCCcCCcCc--cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC
Confidence            77777776632  46667777777777777663 3332   246677777777666 444 3666667777777776666


Q ss_pred             CCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCcccc
Q 003888          409 GPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVD  488 (788)
Q Consensus       409 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  488 (788)
                      + +|.   ..++|++|++++|.+++.. ..                           +++|+.|++++|++++. |.   
T Consensus       251 ~-l~~---~~~~L~~L~l~~N~l~~l~-~~---------------------------~~~L~~L~ls~N~l~~l-~~---  294 (454)
T 1jl5_A          251 T-LPD---LPPSLEALNVRDNYLTDLP-EL---------------------------PQSLTFLDVSENIFSGL-SE---  294 (454)
T ss_dssp             S-CCS---CCTTCCEEECCSSCCSCCC-CC---------------------------CTTCCEEECCSSCCSEE-SC---
T ss_pred             c-ccc---cccccCEEECCCCcccccC-cc---------------------------cCcCCEEECcCCccCcc-cC---
Confidence            4 222   1356666666666655321 11                           14555555555555431 11   


Q ss_pred             CCCCCCEEEccCCcCccccCcccCCC-CCCCEEEccCCcCCC
Q 003888          489 GLSQLSHLILGHNNLEGEVPVQLCEL-NQLQLLDLSNNNLHG  529 (788)
Q Consensus       489 ~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~Ls~n~i~~  529 (788)
                      ..++|++|++++|++++. +    .+ ++|+.|++++|++.+
T Consensus       295 ~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~  331 (454)
T 1jl5_A          295 LPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE  331 (454)
T ss_dssp             CCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC
T ss_pred             cCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc
Confidence            014556666666655531 1    12 356666666665553

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.3e-36  Score=330.00  Aligned_cols=392  Identities=26%  Similarity=0.310  Sum_probs=224.9

Q ss_pred             CCCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCCCCc-------------cEEEcccCcCcccC
Q 003888          199 QHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWL-------------RFLDVSNNNFQGHI  265 (788)
Q Consensus       199 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L-------------~~L~L~~n~i~~~~  265 (788)
                      .+.|++++++++.+ +.+|..+ +++++|++|++++|.+++..|..++.+.+|             ++|++++|.++ .+
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~l   86 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SL   86 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CC
T ss_pred             cccchhhhcccCch-hhCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cC
Confidence            45667777777776 6677664 567777777777777777777777766654             77777777766 34


Q ss_pred             ChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcC
Q 003888          266 PVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFN  345 (788)
Q Consensus       266 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~  345 (788)
                      |.    ..++|++|++++|.+++ +|..   +++|++|++++|.++ .++..    .++|++|++++|+++++.  .+.+
T Consensus        87 p~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~lp--~~~~  151 (454)
T 1jl5_A           87 PE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEKLP--ELQN  151 (454)
T ss_dssp             CS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSSCC--CCTT
T ss_pred             CC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCCCc--ccCC
Confidence            43    13577777777777765 4432   366777777777776 44421    256777777777777633  4667


Q ss_pred             CCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEE
Q 003888          346 LTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILD  425 (788)
Q Consensus       346 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  425 (788)
                      +++|++|++++|++++ +|..+   ++|++|++++|.+++ .| .++.+++|++|++++|.+.+ +|..   .++|++|+
T Consensus       152 l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~  221 (454)
T 1jl5_A          152 SSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIV  221 (454)
T ss_dssp             CTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEE
T ss_pred             CCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEE
Confidence            7777777777777764 44332   467777777777764 34 46777777777777777764 2321   24677777


Q ss_pred             ccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCcc
Q 003888          426 ISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEG  505 (788)
Q Consensus       426 l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  505 (788)
                      +++|.+. ..+....+++|+.|++++|.+.+ ++.    .+++|+.|++++|++++ +|..   +++|++|++++|++++
T Consensus       222 l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          222 AGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG  291 (454)
T ss_dssp             CCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE
T ss_pred             CcCCcCC-cccccCCCCCCCEEECCCCcCCc-ccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc
Confidence            7777776 33444446677777777777643 332    23678888888888775 4432   3678888888888775


Q ss_pred             ccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeee
Q 003888          506 EVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIY  585 (788)
Q Consensus       506 ~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  585 (788)
                      . +..   .++|+.|++++|++.+..                                                      
T Consensus       292 l-~~~---~~~L~~L~l~~N~l~~i~------------------------------------------------------  313 (454)
T 1jl5_A          292 L-SEL---PPNLYYLNASSNEIRSLC------------------------------------------------------  313 (454)
T ss_dssp             E-SCC---CTTCCEEECCSSCCSEEC------------------------------------------------------
T ss_pred             c-cCc---CCcCCEEECcCCcCCccc------------------------------------------------------
Confidence            3 211   257888888888775311                                                      


Q ss_pred             cccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccc--cCCccccCC-
Q 003888          586 QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG--KIPHQLVEL-  662 (788)
Q Consensus       586 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l-  662 (788)
                        ..+++|+.|++++|++++ +|..   +++|++|++++|+++++ |.   .+++|++|++++|++++  .+|..+..+ 
T Consensus       314 --~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~l-p~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~  383 (454)
T 1jl5_A          314 --DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEV-PE---LPQNLKQLHVEYNPLREFPDIPESVEDLR  383 (454)
T ss_dssp             --CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCCCCCTTCCEEE
T ss_pred             --CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccc-cc---hhhhccEEECCCCCCCcCCCChHHHHhhh
Confidence              012479999999999986 5544   58899999999999964 44   47899999999999998  678888777 


Q ss_pred             ------------CCCCEEEccCCcCcc--cCCCcccccCCCCccccCCCCCCCC
Q 003888          663 ------------KTLAVFSVAYNNLSG--EIPEWTAQFATFNESSYEGNTFLCG  702 (788)
Q Consensus       663 ------------~~L~~L~l~~N~l~~--~~p~~~~~~~~~~~~~~~gn~~~c~  702 (788)
                                  ++|+.|++++|++++  .+|.+      +..+.+.+|.+.|.
T Consensus       384 ~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~  431 (454)
T 1jl5_A          384 MNSHLAEVPELPQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDP  431 (454)
T ss_dssp             CCC---------------------------------------------------
T ss_pred             hcccccccccccCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCc
Confidence                        889999999999997  66654      33445555555443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.1e-36  Score=337.97  Aligned_cols=347  Identities=21%  Similarity=0.192  Sum_probs=223.5

Q ss_pred             cEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccC
Q 003888          277 ISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEG  356 (788)
Q Consensus       277 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~  356 (788)
                      +.++.+++.++ .+|..+  .+++++|++++|.++ .++...+..+++|++|++++|.++++.+..|.++++|++|++++
T Consensus        14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            34555555554 233332  235566666666655 33333333455566666666555555555555555556666655


Q ss_pred             CcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCC
Q 003888          357 NHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLP  436 (788)
Q Consensus       357 n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  436 (788)
                      |.++...+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.++    
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----  165 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT----  165 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS----
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc----
Confidence            5555444444555555555555555555444555555555555555555555555555555555555555555443    


Q ss_pred             CCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCC
Q 003888          437 SCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQ  516 (788)
Q Consensus       437 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  516 (788)
                                          .++...+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+..+.......+
T Consensus       166 --------------------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  225 (477)
T 2id5_A          166 --------------------SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN  225 (477)
T ss_dssp             --------------------SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred             --------------------ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence                                233334677788888888888888777777888888888888888776666666666668


Q ss_pred             CCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEE
Q 003888          517 LQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGL  596 (788)
Q Consensus       517 L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  596 (788)
                      |+.|++++|++.+..+..+..                                                    +++|+.|
T Consensus       226 L~~L~l~~n~l~~~~~~~~~~----------------------------------------------------l~~L~~L  253 (477)
T 2id5_A          226 LTSLSITHCNLTAVPYLAVRH----------------------------------------------------LVYLRFL  253 (477)
T ss_dssp             CSEEEEESSCCCSCCHHHHTT----------------------------------------------------CTTCCEE
T ss_pred             ccEEECcCCcccccCHHHhcC----------------------------------------------------ccccCee
Confidence            888888888776433223322                                                    4478888


Q ss_pred             ECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCc
Q 003888          597 DLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLS  676 (788)
Q Consensus       597 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~  676 (788)
                      +|++|.+++..+..|..+++|++|+|++|+++++.|..|.++++|++|++++|++++..+..|..+++|+.|++++|++.
T Consensus       254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             ECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             ECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            88888888777777888888888888888888888888888888888888888888766677788888888888888888


Q ss_pred             ccCCCcccccCCCCccccCCCCCCCCCC
Q 003888          677 GEIPEWTAQFATFNESSYEGNTFLCGLP  704 (788)
Q Consensus       677 ~~~p~~~~~~~~~~~~~~~gn~~~c~~~  704 (788)
                      |..+.. ..+.......+.++...|..|
T Consensus       334 c~c~~~-~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          334 CDCRLL-WVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             CSGGGH-HHHTTTTSSCCTTCCCBEEES
T ss_pred             CccchH-hHHhhhhccccCccCceeCCc
Confidence            654421 112233345566666666544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=8.1e-36  Score=331.00  Aligned_cols=349  Identities=21%  Similarity=0.212  Sum_probs=291.9

Q ss_pred             cEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEcc
Q 003888          252 RFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALS  331 (788)
Q Consensus       252 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~  331 (788)
                      +.++.+++.++ .+|..+   .+++++|++++|.+++..+..|.++++|++|++++|.+++..|.. +.++++|++|+++
T Consensus        14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~   88 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA-FNNLFNLRTLGLR   88 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhh-hhCCccCCEEECC
Confidence            56888888887 788765   358999999999999888889999999999999999998433444 4579999999999


Q ss_pred             CccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCc
Q 003888          332 NNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPI  411 (788)
Q Consensus       332 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~  411 (788)
                      +|+++.+....|.++++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..
T Consensus        89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence            99999888888889999999999999999888888999999999999999998888888999999999999999999877


Q ss_pred             cccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCC
Q 003888          412 PVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLS  491 (788)
Q Consensus       412 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  491 (788)
                      +..+..+++|+.|++++|.+.+.                        +...|..+++|+.|++++|...+.++.......
T Consensus       169 ~~~l~~l~~L~~L~l~~n~i~~~------------------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  224 (477)
T 2id5_A          169 TEALSHLHGLIVLRLRHLNINAI------------------------RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL  224 (477)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCEE------------------------CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC
T ss_pred             hhHhcccCCCcEEeCCCCcCcEe------------------------ChhhcccCcccceeeCCCCccccccCcccccCc
Confidence            77889999999999999987632                        223377889999999999987777776666667


Q ss_pred             CCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccc
Q 003888          492 QLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIH  571 (788)
Q Consensus       492 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  571 (788)
                      +|++|++++|++++..+..+..+++|+.|++++|++.+..+..+..                                  
T Consensus       225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----------------------------------  270 (477)
T 2id5_A          225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE----------------------------------  270 (477)
T ss_dssp             CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT----------------------------------
T ss_pred             cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc----------------------------------
Confidence            9999999999999666677899999999999999988766655554                                  


Q ss_pred             cceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcc
Q 003888          572 ENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKL  651 (788)
Q Consensus       572 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  651 (788)
                                        +++|+.|+|++|++++..|..|..+++|+.|+|++|+++++.+..|..+++|++|++++|++
T Consensus       271 ------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          271 ------------------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             ------------------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred             ------------------cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence                              45899999999999999899999999999999999999998888899999999999999999


Q ss_pred             cccCCccccCCCCCCEEEccCCcCcccCCCc
Q 003888          652 NGKIPHQLVELKTLAVFSVAYNNLSGEIPEW  682 (788)
Q Consensus       652 ~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~  682 (788)
                      .+..+..+ -......+.+.++...|..|..
T Consensus       333 ~c~c~~~~-~~~~~~~~~~~~~~~~C~~p~~  362 (477)
T 2id5_A          333 ACDCRLLW-VFRRRWRLNFNRQQPTCATPEF  362 (477)
T ss_dssp             ECSGGGHH-HHTTTTSSCCTTCCCBEEESGG
T ss_pred             cCccchHh-HHhhhhccccCccCceeCCchH
Confidence            86544221 1223344556677777766654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.2e-34  Score=319.77  Aligned_cols=347  Identities=27%  Similarity=0.375  Sum_probs=244.3

Q ss_pred             cCCCCCEEEcCCCcccccCccCcCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCE
Q 003888          223 NNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQI  302 (788)
Q Consensus       223 ~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~  302 (788)
                      .+++++.|++.++.+...  ..+..+++|++|++++|.+++ ++.  +..+++|++|++++|.+.+..+  +.++++|++
T Consensus        44 ~l~~l~~L~l~~~~i~~l--~~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             HHHTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             HhccccEEecCCCCCccC--cchhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            356777777777776642  235666777777777777663 333  3336677777777777665443  667777777


Q ss_pred             EEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCc
Q 003888          303 LDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNS  382 (788)
Q Consensus       303 L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~  382 (788)
                      |++++|.++ .++.  +..+++|++|++++|.+++..  .+..+++|++|+++ +.+.+.  ..+.++++|++|++++|.
T Consensus       117 L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~  188 (466)
T 1o6v_A          117 LTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNK  188 (466)
T ss_dssp             EECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSC
T ss_pred             EECCCCCCC-CChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCc
Confidence            777777766 4443  335667777777777666532  35566667777665 333322  226666666666666666


Q ss_pred             CCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCccc
Q 003888          383 LSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGT  462 (788)
Q Consensus       383 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  462 (788)
                      +.+.  ..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++.                          ..
T Consensus       189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--------------------------~~  238 (466)
T 1o6v_A          189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--------------------------GT  238 (466)
T ss_dssp             CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--------------------------GG
T ss_pred             CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--------------------------hh
Confidence            6532  235566666666666666665433  45566666666666655421                          12


Q ss_pred             ccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCccccc
Q 003888          463 FFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE  542 (788)
Q Consensus       463 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  542 (788)
                      +..+++|+.|++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|++.+..+  +..     
T Consensus       239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~-----  307 (466)
T 1o6v_A          239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN-----  307 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG-----
T ss_pred             hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC-----
Confidence            6778899999999999886544  7888999999999999986544  7889999999999998875432  111     


Q ss_pred             ccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeC
Q 003888          543 SSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL  622 (788)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  622 (788)
                                                                     +++|+.|++++|++++..|  +..+++|++|++
T Consensus       308 -----------------------------------------------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l  338 (466)
T 1o6v_A          308 -----------------------------------------------LKNLTYLTLYFNNISDISP--VSSLTKLQRLFF  338 (466)
T ss_dssp             -----------------------------------------------CTTCSEEECCSSCCSCCGG--GGGCTTCCEEEC
T ss_pred             -----------------------------------------------CCCCCEEECcCCcCCCchh--hccCccCCEeEC
Confidence                                                           5689999999999987655  788999999999


Q ss_pred             CCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCccc
Q 003888          623 SHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGE  678 (788)
Q Consensus       623 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~  678 (788)
                      ++|++++.  ..+..+++|++|++++|++++..|  +..+++|+.|++++|++++.
T Consensus       339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             CSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             CCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            99999976  578899999999999999988776  78899999999999999874

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.4e-34  Score=317.47  Aligned_cols=346  Identities=27%  Similarity=0.376  Sum_probs=287.1

Q ss_pred             CCCCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCCCCccEEEcccCcCcccCChhhhhcCCCCc
Q 003888          198 HQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLI  277 (788)
Q Consensus       198 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~  277 (788)
                      .+++++.|+++++.+.. +|.  +..+++|++|++++|.+++..+  +..+++|++|++++|.+.+ ++.  +..+++|+
T Consensus        44 ~l~~l~~L~l~~~~i~~-l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~  115 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKS-IDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP--LANLTNLT  115 (466)
T ss_dssp             HHHTCCEEECCSSCCCC-CTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCC
T ss_pred             HhccccEEecCCCCCcc-Ccc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Chh--hcCCCCCC
Confidence            46789999999998765 554  3689999999999999998655  8999999999999999984 443  44589999


Q ss_pred             EEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCC
Q 003888          278 SFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGN  357 (788)
Q Consensus       278 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n  357 (788)
                      +|++++|.+++..+  +.++++|++|++++|.+. .++.  +..+++|++|+++ |.+.+..  .+.++++|++|++++|
T Consensus       116 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n  187 (466)
T 1o6v_A          116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSN  187 (466)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSS
T ss_pred             EEECCCCCCCCChH--HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecC-CcccCch--hhccCCCCCEEECcCC
Confidence            99999999987543  899999999999999998 5664  4479999999997 5555543  3789999999999999


Q ss_pred             cCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCC
Q 003888          358 HLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPS  437 (788)
Q Consensus       358 ~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  437 (788)
                      .+++.  ..+..+++|++|++++|.+.+..+  ++.+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..+ 
T Consensus       188 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-  260 (466)
T 1o6v_A          188 KVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-  260 (466)
T ss_dssp             CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred             cCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-
Confidence            99854  358899999999999999986655  77899999999999999864  467889999999999998864321 


Q ss_pred             CCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCC
Q 003888          438 CFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQL  517 (788)
Q Consensus       438 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  517 (788)
                                               +..+++|+.|++++|.+++..+  +..+++|++|++++|++++..+  +..+++|
T Consensus       261 -------------------------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L  311 (466)
T 1o6v_A          261 -------------------------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL  311 (466)
T ss_dssp             -------------------------GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred             -------------------------hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC
Confidence                                     5667888888998888886543  7788899999999998886544  7788999


Q ss_pred             CEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEE
Q 003888          518 QLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLD  597 (788)
Q Consensus       518 ~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~  597 (788)
                      +.|++++|++.+..|  +..                                                    +++|+.|+
T Consensus       312 ~~L~L~~n~l~~~~~--~~~----------------------------------------------------l~~L~~L~  337 (466)
T 1o6v_A          312 TYLTLYFNNISDISP--VSS----------------------------------------------------LTKLQRLF  337 (466)
T ss_dssp             SEEECCSSCCSCCGG--GGG----------------------------------------------------CTTCCEEE
T ss_pred             CEEECcCCcCCCchh--hcc----------------------------------------------------CccCCEeE
Confidence            999999998876543  211                                                    45899999


Q ss_pred             CCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccc
Q 003888          598 LSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG  653 (788)
Q Consensus       598 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  653 (788)
                      +++|++++.  ..+..+++|+.|++++|++++..|  +..+++|++|++++|++++
T Consensus       338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            999998865  478899999999999999998876  8889999999999999985

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=7e-35  Score=318.59  Aligned_cols=362  Identities=19%  Similarity=0.179  Sum_probs=231.0

Q ss_pred             CcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCCCCccEEEcccCcCcccCChhhh
Q 003888          191 TFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIG  270 (788)
Q Consensus       191 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~  270 (788)
                      ..+..+..+++|++|+++++.+.+ +| . +..+++|++|++++|.+++.   .+..+++|++|++++|.+++ ++  + 
T Consensus        33 ~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~-~~--~-  102 (457)
T 3bz5_A           33 TDTISEEQLATLTSLDCHNSSITD-MT-G-IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN-LD--V-  102 (457)
T ss_dssp             TSEEEHHHHTTCCEEECCSSCCCC-CT-T-GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--C-
T ss_pred             ccccChhHcCCCCEEEccCCCccc-Ch-h-hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCce-ee--c-
Confidence            344556677788888888887775 34 2 35777888888888877764   26677777777777777764 33  2 


Q ss_pred             hcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCC
Q 003888          271 DILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLR  350 (788)
Q Consensus       271 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~  350 (788)
                      ..+++|++|++++|.+++. +  ++.+++|++|++++|.++ .++   ...+++|++|++++|+..+..  .+..+++|+
T Consensus       103 ~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~-~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~  173 (457)
T 3bz5_A          103 TPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLT-EID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLT  173 (457)
T ss_dssp             TTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCS-CCC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred             CCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccc-eec---cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence            2367777777777777653 2  667777777777777776 343   235677777777777433322  355667777


Q ss_pred             EEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCc
Q 003888          351 SLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNN  430 (788)
Q Consensus       351 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  430 (788)
                      +|++++|++++ +|  +..+++|+.|++++|.+++.   .+..+++|++|++++|++++ +|  +..+++|+.|++++|.
T Consensus       174 ~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          174 TLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNP  244 (457)
T ss_dssp             EEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSC
T ss_pred             EEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCc
Confidence            77777777764 33  56667777777777776643   25666777777777777765 33  5666677777777776


Q ss_pred             CCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcc
Q 003888          431 ISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQ  510 (788)
Q Consensus       431 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  510 (788)
                      +++..+.  .+++++.|+++++               +|+.|++++|.+.+.+|  +..+++|+.|++++|...+.+|. 
T Consensus       245 l~~~~~~--~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~-  304 (457)
T 3bz5_A          245 LTELDVS--TLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC-  304 (457)
T ss_dssp             CSCCCCT--TCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC-
T ss_pred             CCCcCHH--HCCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc-
Confidence            6654221  1233444433322               23334444444333332  23344444444444443333332 


Q ss_pred             cCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeeccccc
Q 003888          511 LCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVL  590 (788)
Q Consensus       511 l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  590 (788)
                        ..++|+.|++++                                                                 .
T Consensus       305 --~~~~L~~L~l~~-----------------------------------------------------------------~  317 (457)
T 3bz5_A          305 --QAAGITELDLSQ-----------------------------------------------------------------N  317 (457)
T ss_dssp             --TTCCCSCCCCTT-----------------------------------------------------------------C
T ss_pred             --CCCcceEechhh-----------------------------------------------------------------c
Confidence              122333333333                                                                 2


Q ss_pred             ccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEc
Q 003888          591 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSV  670 (788)
Q Consensus       591 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  670 (788)
                      ++|+.|++++|++++. +  ++.+++|+.|++++|+++++        +.|+.|++++|.+.+.     ..+..|..+++
T Consensus       318 ~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l  381 (457)
T 3bz5_A          318 PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQDF--------SSVGKIPALNNNFEAE-----GQTITMPKETL  381 (457)
T ss_dssp             TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCBC--------TTGGGSSGGGTSEEEE-----EEEEECCCBCC
T ss_pred             ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCCc--------cccccccccCCcEEec-----ceeeecCcccc
Confidence            4799999999999974 3  88999999999999999863        5677788999999865     34566788899


Q ss_pred             cCCcCcccCCCcc
Q 003888          671 AYNNLSGEIPEWT  683 (788)
Q Consensus       671 ~~N~l~~~~p~~~  683 (788)
                      ++|+++|.+|..+
T Consensus       382 ~~N~l~g~ip~~~  394 (457)
T 3bz5_A          382 TNNSLTIAVSPDL  394 (457)
T ss_dssp             BTTBEEEECCTTC
T ss_pred             ccCcEEEEcChhH
Confidence            9999999998743

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=5.1e-34  Score=307.57  Aligned_cols=334  Identities=23%  Similarity=0.219  Sum_probs=179.8

Q ss_pred             CCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEE
Q 003888          298 NFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLY  377 (788)
Q Consensus       298 ~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  377 (788)
                      +++++|++++|.++ .+|..++..+++|++|++++|.++++.+..+..+++|++|++++|.+++..|..+.++++|++|+
T Consensus        45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            44555555555554 45554444455555555555555555444555555555555555555544455555555555555


Q ss_pred             ccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccc
Q 003888          378 LNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQ  457 (788)
Q Consensus       378 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~  457 (788)
                      +++|.++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..  ....++++.+++++|.+.+ 
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~-  200 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST-  200 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSE-
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccc-
Confidence            5555555333333455555555555555555544455555555555555555554321  1112344444444443322 


Q ss_pred             cCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcC
Q 003888          458 LKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDN  537 (788)
Q Consensus       458 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~  537 (788)
                           +...++|+.|++++|.+... |.  ...++|++|++++|.+++.  ..+..+++|+.|++++|.+.+..|..+..
T Consensus       201 -----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  270 (390)
T 3o6n_A          201 -----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK  270 (390)
T ss_dssp             -----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred             -----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence                 22234566666666665533 22  1235566666666666532  34555666666666666655444433332


Q ss_pred             cccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccC
Q 003888          538 TTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRI  617 (788)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  617 (788)
                                                                          +++|+.|++++|++++ +|..+..+++|
T Consensus       271 ----------------------------------------------------l~~L~~L~L~~n~l~~-~~~~~~~l~~L  297 (390)
T 3o6n_A          271 ----------------------------------------------------MQRLERLYISNNRLVA-LNLYGQPIPTL  297 (390)
T ss_dssp             ----------------------------------------------------CSSCCEEECCSSCCCE-EECSSSCCTTC
T ss_pred             ----------------------------------------------------cccCCEEECCCCcCcc-cCcccCCCCCC
Confidence                                                                2356666666666653 34445566677


Q ss_pred             CeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCCcccccCCCCccccCCC
Q 003888          618 QTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGN  697 (788)
Q Consensus       618 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~gn  697 (788)
                      ++|++++|+++++ |..+..+++|++|++++|+++.. |  +..+++|+.|++++|++.+....  ..+..+....+.++
T Consensus       298 ~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~  371 (390)
T 3o6n_A          298 KVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDA  371 (390)
T ss_dssp             CEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCC
T ss_pred             CEEECCCCcceec-CccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH--HHHHHHHhhccccc
Confidence            7777777777643 44456667777777777777643 2  45667777777777777764321  22334444556666


Q ss_pred             CCCCCCC
Q 003888          698 TFLCGLP  704 (788)
Q Consensus       698 ~~~c~~~  704 (788)
                      +..|.++
T Consensus       372 ~~~c~~~  378 (390)
T 3o6n_A          372 DQHCKID  378 (390)
T ss_dssp             CSCCCTT
T ss_pred             Cceeccc
Confidence            6666543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3.5e-33  Score=305.20  Aligned_cols=63  Identities=22%  Similarity=0.256  Sum_probs=40.4

Q ss_pred             cccCCCCCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccc
Q 003888           69 GLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQI  137 (788)
Q Consensus        69 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~  137 (788)
                      .++++++|++|++++|.+++. | .++.+++|++|++++|.++ .+|   ++.+++|++|++++|.+++
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~   99 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTN   99 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSC
T ss_pred             ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCce
Confidence            466667777777777776643 4 5666777777777777666 343   5566666666666666553

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=4e-33  Score=317.13  Aligned_cols=334  Identities=23%  Similarity=0.223  Sum_probs=192.4

Q ss_pred             CCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEE
Q 003888          298 NFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLY  377 (788)
Q Consensus       298 ~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  377 (788)
                      ++++.+++++|.+. .+|..++..+++|++|++++|.++++.+..+..+++|++|++++|.+++..|..|+++++|++|+
T Consensus        51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            34444444444443 44444444444555555555544444444444455555555555555444444444555555555


Q ss_pred             ccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccc
Q 003888          378 LNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQ  457 (788)
Q Consensus       378 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~  457 (788)
                      +++|.+++..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..  ...+++|+.|++++|.+.+ 
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~-  206 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST-  206 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE-
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc-
Confidence            5555554333333444555555555555554444444555555555555555444321  1113344444444444422 


Q ss_pred             cCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcC
Q 003888          458 LKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDN  537 (788)
Q Consensus       458 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~  537 (788)
                           +...++|+.|++++|.+....+. +  .++|+.|++++|.+++  +..+..+++|+.|++++|.+.+..|..+..
T Consensus       207 -----l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~  276 (597)
T 3oja_B          207 -----LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK  276 (597)
T ss_dssp             -----EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred             -----ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence                 23335677777777776533222 1  2567777777777764  245667777777777777776655554443


Q ss_pred             cccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccC
Q 003888          538 TTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRI  617 (788)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  617 (788)
                                                                          +++|+.|+|++|.+++ +|..+..+++|
T Consensus       277 ----------------------------------------------------l~~L~~L~Ls~N~l~~-l~~~~~~l~~L  303 (597)
T 3oja_B          277 ----------------------------------------------------MQRLERLYISNNRLVA-LNLYGQPIPTL  303 (597)
T ss_dssp             ----------------------------------------------------CSSCCEEECTTSCCCE-EECSSSCCTTC
T ss_pred             ----------------------------------------------------ccCCCEEECCCCCCCC-CCcccccCCCC
Confidence                                                                3467777777777774 45566677888


Q ss_pred             CeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCCcccccCCCCccccCCC
Q 003888          618 QTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGN  697 (788)
Q Consensus       618 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~gn  697 (788)
                      +.|+|++|.+++ +|..+..+++|++|++++|++++. |  +..+++|+.|++++|++.|..+.  ..+..+....+.++
T Consensus       304 ~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~  377 (597)
T 3oja_B          304 KVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDA  377 (597)
T ss_dssp             CEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCC
T ss_pred             cEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH--HHHHHHhhhccccc
Confidence            888888888884 456677788888888888888754 2  56678888888888888875432  23445556667788


Q ss_pred             CCCCCCC
Q 003888          698 TFLCGLP  704 (788)
Q Consensus       698 ~~~c~~~  704 (788)
                      +..|+.+
T Consensus       378 ~~~C~~~  384 (597)
T 3oja_B          378 DQHCKID  384 (597)
T ss_dssp             CCCCCTT
T ss_pred             cccCCcc
Confidence            8777653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=6.3e-32  Score=286.58  Aligned_cols=304  Identities=24%  Similarity=0.341  Sum_probs=182.3

Q ss_pred             CCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEE
Q 003888          273 LPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSL  352 (788)
Q Consensus       273 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  352 (788)
                      +++|++|++++|.+... + .+..+++|++|++++|.++ .++.  +..+++|++|++++|.++..  ..+.++++|++|
T Consensus        43 l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L  115 (347)
T 4fmz_A           43 LESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL  115 (347)
T ss_dssp             HTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred             cccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence            34555555555555432 2 2555555666666666555 3443  33455666666666655543  235556666666


Q ss_pred             eccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCC
Q 003888          353 QLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNIS  432 (788)
Q Consensus       353 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  432 (788)
                      ++++|.+++. +. +..+++|++|++++|...... ..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.
T Consensus       116 ~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~  190 (347)
T 4fmz_A          116 YLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE  190 (347)
T ss_dssp             ECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred             ECcCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence            6666665532 22 556666666666666443222 235566666666666666554332  555666666666666554


Q ss_pred             CCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccC
Q 003888          433 GSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLC  512 (788)
Q Consensus       433 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  512 (788)
                      +..                        .  +..+++|+.|++++|.+++..+  +..+++|++|++++|.+++..+  +.
T Consensus       191 ~~~------------------------~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~  240 (347)
T 4fmz_A          191 DIS------------------------P--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA  240 (347)
T ss_dssp             CCG------------------------G--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred             ccc------------------------c--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hh
Confidence            221                        1  4455666667777666664333  5666677777777777664433  66


Q ss_pred             CCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeeccccccc
Q 003888          513 ELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSL  592 (788)
Q Consensus       513 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  592 (788)
                      .+++|++|++++|.+.+.  ..+.                                                    .+++
T Consensus       241 ~l~~L~~L~l~~n~l~~~--~~~~----------------------------------------------------~l~~  266 (347)
T 4fmz_A          241 NLSQLTWLEIGTNQISDI--NAVK----------------------------------------------------DLTK  266 (347)
T ss_dssp             TCTTCCEEECCSSCCCCC--GGGT----------------------------------------------------TCTT
T ss_pred             cCCCCCEEECCCCccCCC--hhHh----------------------------------------------------cCCC
Confidence            677777777777766532  1111                                                    1346


Q ss_pred             ccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccC
Q 003888          593 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAY  672 (788)
Q Consensus       593 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~  672 (788)
                      |+.|++++|.+++.  ..+..+++|++|++++|++++..+..++.+++|++|++++|++++..|  +..+++|+.|++++
T Consensus       267 L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~  342 (347)
T 4fmz_A          267 LKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFAN  342 (347)
T ss_dssp             CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSC
T ss_pred             cCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhh
Confidence            77777777777653  357777788888888888877777777778888888888888776555  67778888888888


Q ss_pred             CcCc
Q 003888          673 NNLS  676 (788)
Q Consensus       673 N~l~  676 (788)
                      |+++
T Consensus       343 N~i~  346 (347)
T 4fmz_A          343 QVIK  346 (347)
T ss_dssp             C---
T ss_pred             hccc
Confidence            8765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=8.1e-32  Score=290.37  Aligned_cols=333  Identities=23%  Similarity=0.269  Sum_probs=240.4

Q ss_pred             CCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCE
Q 003888          248 HRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEF  327 (788)
Q Consensus       248 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~  327 (788)
                      +++++.++++++.++ .+|..++..+++|++|++++|.+.+..+..|.++++|++|++++|.++ .++...+..+++|++
T Consensus        44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence            456777777777776 677766666778888888888887766667778888888888888877 444444446777777


Q ss_pred             EEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcc
Q 003888          328 LALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHL  407 (788)
Q Consensus       328 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~  407 (788)
                      |++++|+++.+....+.++++|++|++++|.+++..+..+..+++|++|++++|.+++.   .+..+++|+.|++++|.+
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence            77777777766665566777777777777777766666677777777777777777643   244566777777777766


Q ss_pred             cCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccc
Q 003888          408 EGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWV  487 (788)
Q Consensus       408 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  487 (788)
                      .+.     ...++|++|++++|.+..                        ++..   ..++|+.|++++|.+++.  .++
T Consensus       199 ~~~-----~~~~~L~~L~l~~n~l~~------------------------~~~~---~~~~L~~L~l~~n~l~~~--~~l  244 (390)
T 3o6n_A          199 STL-----AIPIAVEELDASHNSINV------------------------VRGP---VNVELTILKLQHNNLTDT--AWL  244 (390)
T ss_dssp             SEE-----ECCSSCSEEECCSSCCCE------------------------EECC---CCSSCCEEECCSSCCCCC--GGG
T ss_pred             ccc-----CCCCcceEEECCCCeeee------------------------cccc---ccccccEEECCCCCCccc--HHH
Confidence            532     233456666666665542                        1211   236889999999988853  568


Q ss_pred             cCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhh
Q 003888          488 DGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAE  567 (788)
Q Consensus       488 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  567 (788)
                      ..+++|++|++++|.+++..|..+..+++|+.|++++|++.+. |..+.                               
T Consensus       245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~-------------------------------  292 (390)
T 3o6n_A          245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQ-------------------------------  292 (390)
T ss_dssp             GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSS-------------------------------
T ss_pred             cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccC-------------------------------
Confidence            8899999999999999988888899999999999999988642 11111                               


Q ss_pred             hccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECc
Q 003888          568 KQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLS  647 (788)
Q Consensus       568 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  647 (788)
                                           .+++|+.|++++|++. .+|..+..+++|++|++++|++++..   +..+++|++|+++
T Consensus       293 ---------------------~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~  347 (390)
T 3o6n_A          293 ---------------------PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLS  347 (390)
T ss_dssp             ---------------------CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECC
T ss_pred             ---------------------CCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcC
Confidence                                 1568999999999998 56778889999999999999999763   6778999999999


Q ss_pred             CCcccccCCccccCCCCCCEEEccCCcCccc
Q 003888          648 YNKLNGKIPHQLVELKTLAVFSVAYNNLSGE  678 (788)
Q Consensus       648 ~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~  678 (788)
                      +|++.+.....+  +..+....+..+...+.
T Consensus       348 ~N~~~~~~~~~~--~~~~~~~~~~~~~~~c~  376 (390)
T 3o6n_A          348 HNDWDCNSLRAL--FRNVARPAVDDADQHCK  376 (390)
T ss_dssp             SSCEEHHHHHHH--TTTCCTTTBCCCCSCCC
T ss_pred             CCCccchhHHHH--HHHHHhhcccccCceec
Confidence            999987533222  22333333444544443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.8e-31  Score=283.08  Aligned_cols=305  Identities=27%  Similarity=0.355  Sum_probs=223.4

Q ss_pred             CCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCC
Q 003888          247 SHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLE  326 (788)
Q Consensus       247 ~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~  326 (788)
                      .+++|++|+++++.+. .++.  ...+++|++|++++|.+++..+  +.++++|++|++++|.++ .++.  +..+++|+
T Consensus        42 ~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~  113 (347)
T 4fmz_A           42 ELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLTNLR  113 (347)
T ss_dssp             HHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCS
T ss_pred             hcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-CchH--HcCCCcCC
Confidence            3445555555555554 3332  2235677777777777664433  677777777777777776 4542  33577777


Q ss_pred             EEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCc
Q 003888          327 FLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENH  406 (788)
Q Consensus       327 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~  406 (788)
                      +|++++|.+++..+  +..+++|++|++++|..... +..+..+++|++|++++|.+.+..+  +..+++|++|++++|.
T Consensus       114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~  188 (347)
T 4fmz_A          114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ  188 (347)
T ss_dssp             EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred             EEECcCCcccCchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence            77777777776543  66778888888888865533 3347888888888888888775433  7778888888888888


Q ss_pred             ccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCcc
Q 003888          407 LEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNW  486 (788)
Q Consensus       407 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  486 (788)
                      +.+..+  +..+++|+.+++++|.+.+..+                          +..+++|++|++++|.+++..+  
T Consensus       189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--------------------------~~~~~~L~~L~l~~n~l~~~~~--  238 (347)
T 4fmz_A          189 IEDISP--LASLTSLHYFTAYVNQITDITP--------------------------VANMTRLNSLKIGNNKITDLSP--  238 (347)
T ss_dssp             CCCCGG--GGGCTTCCEEECCSSCCCCCGG--------------------------GGGCTTCCEEECCSSCCCCCGG--
T ss_pred             cccccc--ccCCCccceeecccCCCCCCch--------------------------hhcCCcCCEEEccCCccCCCcc--
Confidence            875433  7788888888888887763211                          5567888888888888875443  


Q ss_pred             ccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchh
Q 003888          487 VDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPA  566 (788)
Q Consensus       487 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  566 (788)
                      +..+++|++|++++|.+++.  ..+..+++|+.|++++|++.+.  +.+.                              
T Consensus       239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~------------------------------  284 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLN------------------------------  284 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGG------------------------------
T ss_pred             hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhc------------------------------
Confidence            77888899999999988754  4688889999999999988653  1111                              


Q ss_pred             hhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEEC
Q 003888          567 EKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDL  646 (788)
Q Consensus       567 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  646 (788)
                                            .+++|+.|++++|.+++..|..++.+++|++|++++|++++..|  +..+++|++|++
T Consensus       285 ----------------------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l  340 (347)
T 4fmz_A          285 ----------------------NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADF  340 (347)
T ss_dssp             ----------------------GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESS
T ss_pred             ----------------------CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeeh
Confidence                                  15689999999999998888999999999999999999998766  888999999999


Q ss_pred             cCCccc
Q 003888          647 SYNKLN  652 (788)
Q Consensus       647 s~N~l~  652 (788)
                      ++|+++
T Consensus       341 ~~N~i~  346 (347)
T 4fmz_A          341 ANQVIK  346 (347)
T ss_dssp             SCC---
T ss_pred             hhhccc
Confidence            999986

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=7.4e-33  Score=287.91  Aligned_cols=260  Identities=35%  Similarity=0.565  Sum_probs=209.2

Q ss_pred             CCCCEEEccCCcCCC--CCcccccCCCCCCEEeCCC-CcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEE
Q 003888          371 SSLEGLYLNNNSLSG--KIPRWLGNLTGLKHIIMPE-NHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQV  447 (788)
Q Consensus       371 ~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L  447 (788)
                      .+++.|++++|.+.+  ..|..+..+++|++|++++ |.+.+..|..|..+++|++|++++|.+++              
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--------------  115 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG--------------  115 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE--------------
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC--------------
Confidence            355666666666665  5556666666666666663 66666666666677777777777766652              


Q ss_pred             EccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCC-CCCEEEccCCc
Q 003888          448 HLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELN-QLQLLDLSNNN  526 (788)
Q Consensus       448 ~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~  526 (788)
                               .+|.. +..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..++ +|+.|++++|+
T Consensus       116 ---------~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          116 ---------AIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             ---------ECCGG-GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             ---------cCCHH-HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence                     23332 66777888888888888877888888888888888888888878888888887 88888888888


Q ss_pred             CCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCccccc
Q 003888          527 LHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGH  606 (788)
Q Consensus       527 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  606 (788)
                      +.+..|..+..                                                    + .|+.|++++|.+++.
T Consensus       186 l~~~~~~~~~~----------------------------------------------------l-~L~~L~Ls~N~l~~~  212 (313)
T 1ogq_A          186 LTGKIPPTFAN----------------------------------------------------L-NLAFVDLSRNMLEGD  212 (313)
T ss_dssp             EEEECCGGGGG----------------------------------------------------C-CCSEEECCSSEEEEC
T ss_pred             eeccCChHHhC----------------------------------------------------C-cccEEECcCCcccCc
Confidence            87666655443                                                    2 388999999999989


Q ss_pred             CcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCCccccc
Q 003888          607 IPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQF  686 (788)
Q Consensus       607 ~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~  686 (788)
                      .|..|..+++|+.|++++|++++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.. ..+
T Consensus       213 ~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l  290 (313)
T 1ogq_A          213 ASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL  290 (313)
T ss_dssp             CGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred             CCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccc
Confidence            999999999999999999999977665 888999999999999999999999999999999999999999999986 889


Q ss_pred             CCCCccccCCCCCCCCCCCCCCC
Q 003888          687 ATFNESSYEGNTFLCGLPLPICR  709 (788)
Q Consensus       687 ~~~~~~~~~gn~~~c~~~l~~c~  709 (788)
                      +++..+++.+|+++|+.|++.|.
T Consensus       291 ~~L~~l~l~~N~~lc~~p~~~C~  313 (313)
T 1ogq_A          291 QRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             GGSCGGGTCSSSEEESTTSSCCC
T ss_pred             cccChHHhcCCCCccCCCCCCCC
Confidence            99999999999999998887773

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=5.8e-31  Score=299.29  Aligned_cols=313  Identities=23%  Similarity=0.278  Sum_probs=238.5

Q ss_pred             CCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCE
Q 003888          248 HRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEF  327 (788)
Q Consensus       248 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~  327 (788)
                      +.+++.+++++|.+. .+|..++..+++|++|++++|.+.+..+..|..+++|++|++++|.++ .++...+.++++|++
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCE
Confidence            456777777777776 667766666788888888888888777777888888888888888887 455554456788888


Q ss_pred             EEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcc
Q 003888          328 LALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHL  407 (788)
Q Consensus       328 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~  407 (788)
                      |++++|.++++++..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++..   +..+++|+.|++++|.+
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence            888888887766666677788888888888887777777777888888888888776442   44567777777777766


Q ss_pred             cCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccc
Q 003888          408 EGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWV  487 (788)
Q Consensus       408 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  487 (788)
                      .+     +...++|+.|++++|.+...                        +..   ..++|+.|++++|.+++  +.++
T Consensus       205 ~~-----l~~~~~L~~L~ls~n~l~~~------------------------~~~---~~~~L~~L~L~~n~l~~--~~~l  250 (597)
T 3oja_B          205 ST-----LAIPIAVEELDASHNSINVV------------------------RGP---VNVELTILKLQHNNLTD--TAWL  250 (597)
T ss_dssp             SE-----EECCTTCSEEECCSSCCCEE------------------------ECS---CCSCCCEEECCSSCCCC--CGGG
T ss_pred             cc-----ccCCchhheeeccCCccccc------------------------ccc---cCCCCCEEECCCCCCCC--Chhh
Confidence            53     23345677777777765422                        111   12578899999998885  4678


Q ss_pred             cCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhh
Q 003888          488 DGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAE  567 (788)
Q Consensus       488 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  567 (788)
                      ..+++|+.|++++|.+++..|..|..+++|+.|++++|.+.+. |..+.                               
T Consensus       251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~-------------------------------  298 (597)
T 3oja_B          251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQ-------------------------------  298 (597)
T ss_dssp             GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSS-------------------------------
T ss_pred             ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-Ccccc-------------------------------
Confidence            8899999999999999988888999999999999999988752 22211                               


Q ss_pred             hccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECc
Q 003888          568 KQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLS  647 (788)
Q Consensus       568 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  647 (788)
                                           .+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++..   +..+++|+.|+++
T Consensus       299 ---------------------~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~  353 (597)
T 3oja_B          299 ---------------------PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLS  353 (597)
T ss_dssp             ---------------------CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECC
T ss_pred             ---------------------cCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEee
Confidence                                 1568999999999998 67888899999999999999999763   6778999999999


Q ss_pred             CCcccccCC
Q 003888          648 YNKLNGKIP  656 (788)
Q Consensus       648 ~N~l~~~~p  656 (788)
                      +|++.+...
T Consensus       354 ~N~~~~~~~  362 (597)
T 3oja_B          354 HNDWDCNSL  362 (597)
T ss_dssp             SSCEEHHHH
T ss_pred             CCCCCChhH
Confidence            999987543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=5.6e-30  Score=269.21  Aligned_cols=291  Identities=23%  Similarity=0.311  Sum_probs=206.9

Q ss_pred             CCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEc
Q 003888          299 FLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYL  378 (788)
Q Consensus       299 ~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  378 (788)
                      +++.++++++.++ .+|..+   .+++++|++++|+++++.+..+.++++|++|++++|.+++..|..+..+++|++|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            4566666666665 566543   356777777777777766666777777777777777777666777777788888888


Q ss_pred             cCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCccccccc
Q 003888          379 NNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQL  458 (788)
Q Consensus       379 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  458 (788)
                      ++|.++ ..|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+...                      ..
T Consensus       108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~  162 (330)
T 1xku_A          108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS----------------------GI  162 (330)
T ss_dssp             CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----------------------GB
T ss_pred             CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc----------------------Cc
Confidence            887776 3444333  6788888888888777667777888888888888776421                      11


Q ss_pred             CcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCc
Q 003888          459 KRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNT  538 (788)
Q Consensus       459 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~  538 (788)
                      ....+..+++|++|++++|.++. +|..+.  ++|++|++++|++++..+..+..+++|+.|++++|++.+..+..+.. 
T Consensus       163 ~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-  238 (330)
T 1xku_A          163 ENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN-  238 (330)
T ss_dssp             CTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG-
T ss_pred             ChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC-
Confidence            22236677788888888888774 444332  67888888888888777777888888888888888877655544433 


Q ss_pred             ccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCC
Q 003888          539 TLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQ  618 (788)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  618 (788)
                                                                         +++|+.|++++|+++ .+|..+..+++|+
T Consensus       239 ---------------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~  266 (330)
T 1xku_A          239 ---------------------------------------------------TPHLRELHLNNNKLV-KVPGGLADHKYIQ  266 (330)
T ss_dssp             ---------------------------------------------------STTCCEEECCSSCCS-SCCTTTTTCSSCC
T ss_pred             ---------------------------------------------------CCCCCEEECCCCcCc-cCChhhccCCCcC
Confidence                                                               347888888888887 6677788888888


Q ss_pred             eEeCCCCcCCccCCccccCC------CCCCEEECcCCcccc--cCCccccCCCCCCEEEccCCc
Q 003888          619 TLNLSHNNLTGLIPSTFSNL------KHIESLDLSYNKLNG--KIPHQLVELKTLAVFSVAYNN  674 (788)
Q Consensus       619 ~L~Ls~N~l~~~~~~~~~~l------~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~l~~N~  674 (788)
                      +|++++|+++++.+..|...      ++|+.|++++|++..  ..|..|..+.+++.+++++|+
T Consensus       267 ~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          267 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             EEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             EEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            88888888888777777543      678888888888763  556777788888888888874

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=3.4e-30  Score=271.00  Aligned_cols=290  Identities=22%  Similarity=0.301  Sum_probs=197.0

Q ss_pred             CCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEc
Q 003888          299 FLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYL  378 (788)
Q Consensus       299 ~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  378 (788)
                      +++.++++++.++ .+|..+   .++|++|++++|.++++.+..+.++++|++|++++|.+++..|..+.++++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            4667777777776 666554   356777777777777766667777777777777777777666777777777888888


Q ss_pred             cCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCccccccc
Q 003888          379 NNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQL  458 (788)
Q Consensus       379 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  458 (788)
                      ++|.++ .+|..+.  ++|++|++++|.+....+..|..+++|++|++++|.++..                      ..
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~  164 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS----------------------GF  164 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG----------------------GS
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC----------------------CC
Confidence            777776 3443333  6777778877777766666677777777777777776421                      01


Q ss_pred             CcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCc
Q 003888          459 KRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNT  538 (788)
Q Consensus       459 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~  538 (788)
                      ....+..+ +|+.|++++|++++ +|..+.  ++|++|++++|.+++..+..+..+++|+.|++++|++.+..+..+.. 
T Consensus       165 ~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~-  239 (332)
T 2ft3_A          165 EPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF-  239 (332)
T ss_dssp             CTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG-
T ss_pred             CcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC-
Confidence            11124444 66677777777664 333332  56777777777777666667777777777777777776655544433 


Q ss_pred             ccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCC
Q 003888          539 TLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQ  618 (788)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  618 (788)
                                                                         +++|+.|++++|+++ .+|..+..+++|+
T Consensus       240 ---------------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~  267 (332)
T 2ft3_A          240 ---------------------------------------------------LPTLRELHLDNNKLS-RVPAGLPDLKLLQ  267 (332)
T ss_dssp             ---------------------------------------------------CTTCCEEECCSSCCC-BCCTTGGGCTTCC
T ss_pred             ---------------------------------------------------CCCCCEEECCCCcCe-ecChhhhcCccCC
Confidence                                                               346777777777777 5666777788888


Q ss_pred             eEeCCCCcCCccCCccccCC------CCCCEEECcCCccc--ccCCccccCCCCCCEEEccCCc
Q 003888          619 TLNLSHNNLTGLIPSTFSNL------KHIESLDLSYNKLN--GKIPHQLVELKTLAVFSVAYNN  674 (788)
Q Consensus       619 ~L~Ls~N~l~~~~~~~~~~l------~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~l~~N~  674 (788)
                      .|++++|+++++.+..|...      ++|+.|++++|++.  +..|..|..+++|+.+++++|+
T Consensus       268 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          268 VVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             EEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             EEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            88888888887776666553      56788888888776  5666777778888888887774

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=8.6e-34  Score=313.67  Aligned_cols=363  Identities=19%  Similarity=0.151  Sum_probs=237.2

Q ss_pred             CCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCC----CCcccccCCCCCCEEEcccCcCCCccchHHHhcCC-
Q 003888          249 RWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDS----SIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCV-  323 (788)
Q Consensus       249 ~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~-  323 (788)
                      ++|++|++++|.+++.....++..+++|++|++++|.++.    .++..+..+++|++|++++|.+.+..+..++..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            4678888888888754444545667899999999998874    34566788899999999999887555556665566 


Q ss_pred             ---CCCEEEccCccCCC----cCcccCcCCCCCCEEeccCCcCCCcCCccc-----cCCCCCCEEEccCCcCCCCC----
Q 003888          324 ---NLEFLALSNNNLKG----HMFSRNFNLTNLRSLQLEGNHLEGEIPQSL-----SKCSSLEGLYLNNNSLSGKI----  387 (788)
Q Consensus       324 ---~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~i~~~~----  387 (788)
                         +|++|++++|+++.    ..+..+..+++|++|++++|.+++..+..+     ...++|++|++++|.+++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               68888888888875    335667788888888888888764333322     23567888888888877543    


Q ss_pred             cccccCCCCCCEEeCCCCcccCCcccccc-----CCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCccc
Q 003888          388 PRWLGNLTGLKHIIMPENHLEGPIPVGFC-----QLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGT  462 (788)
Q Consensus       388 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  462 (788)
                      +..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++....                   .++. .
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-------------------~l~~-~  222 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR-------------------DLCG-I  222 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH-------------------HHHH-H
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH-------------------HHHH-H
Confidence            44555678888888888887654443332     255788888888776532100                   1121 1


Q ss_pred             ccCCCCCcEEEccCCcCCCCC-----CccccCCCCCCEEEccCCcCccc----cCcccCCCCCCCEEEccCCcCCCCCCC
Q 003888          463 FFHCSSLVTLDLSYNRLNGSI-----PNWVDGLSQLSHLILGHNNLEGE----VPVQLCELNQLQLLDLSNNNLHGPIPP  533 (788)
Q Consensus       463 ~~~~~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~i~~~~~~  533 (788)
                      +..+++|++|++++|.+++..     +..+..+++|++|++++|.+++.    ++..+..+++|+.|++++|++.+..+.
T Consensus       223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  302 (461)
T 1z7x_W          223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR  302 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence            455677777777777665432     22233467777777777777643    345566677777777777765421111


Q ss_pred             CCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCccccc----Ccc
Q 003888          534 CFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGH----IPP  609 (788)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~  609 (788)
                      .+...-                                               ....++|+.|++++|.+++.    ++.
T Consensus       303 ~l~~~l-----------------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~  335 (461)
T 1z7x_W          303 LLCETL-----------------------------------------------LEPGCQLESLWVKSCSFTAACCSHFSS  335 (461)
T ss_dssp             HHHHHH-----------------------------------------------TSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             HHHHHh-----------------------------------------------ccCCccceeeEcCCCCCchHHHHHHHH
Confidence            110000                                               00123677777777777654    345


Q ss_pred             cccCcccCCeEeCCCCcCCccCCccccC-----CCCCCEEECcCCcccc----cCCccccCCCCCCEEEccCCcCccc
Q 003888          610 QIGNLTRIQTLNLSHNNLTGLIPSTFSN-----LKHIESLDLSYNKLNG----KIPHQLVELKTLAVFSVAYNNLSGE  678 (788)
Q Consensus       610 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~l~~N~l~~~  678 (788)
                      .+..+++|++|++++|++++..+..+..     .++|++|++++|++++    .+|..+..+++|++|++++|++++.
T Consensus       336 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            5666677788888877777654433332     5677888888887775    5666777777788888888877643

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.5e-29  Score=266.15  Aligned_cols=288  Identities=21%  Similarity=0.254  Sum_probs=193.4

Q ss_pred             CCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEcc
Q 003888          348 NLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDIS  427 (788)
Q Consensus       348 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  427 (788)
                      +++.++++++.++ .+|..+.  ++++.|++++|.+.+..+..|.++++|++|++++|.+.+..|..|..+++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            4555555555555 3343332  455666666666554445555666666666666666655555556666666666666


Q ss_pred             CCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCC--CCCccccCCCCCCEEEccCCcCcc
Q 003888          428 DNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNG--SIPNWVDGLSQLSHLILGHNNLEG  505 (788)
Q Consensus       428 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~  505 (788)
                      +|.++......+  .+|++|++++|.+. .++...|..+++|++|++++|.++.  ..+..+..+ +|++|++++|++++
T Consensus       111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          111 KNHLVEIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             SSCCCSCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CCcCCccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            666553333222  45555555555553 3444447788888888888888853  566677777 88888888888885


Q ss_pred             ccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeee
Q 003888          506 EVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIY  585 (788)
Q Consensus       506 ~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  585 (788)
                       +|..+.  ++|+.|++++|++.+..+..+..                                                
T Consensus       187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~------------------------------------------------  215 (332)
T 2ft3_A          187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLR------------------------------------------------  215 (332)
T ss_dssp             -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTT------------------------------------------------
T ss_pred             -cCcccc--CCCCEEECCCCcCCccCHHHhcC------------------------------------------------
Confidence             444433  68888888888887766665554                                                


Q ss_pred             cccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCC---
Q 003888          586 QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL---  662 (788)
Q Consensus       586 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l---  662 (788)
                          +++|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|...   
T Consensus       216 ----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~  290 (332)
T 2ft3_A          216 ----YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFG  290 (332)
T ss_dssp             ----CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCC
T ss_pred             ----CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccc
Confidence                347888888888888777778888888888888888888 456678888888888888888887666666543   


Q ss_pred             ---CCCCEEEccCCcCc--ccCCCcccccCCCCccccCCCC
Q 003888          663 ---KTLAVFSVAYNNLS--GEIPEWTAQFATFNESSYEGNT  698 (788)
Q Consensus       663 ---~~L~~L~l~~N~l~--~~~p~~~~~~~~~~~~~~~gn~  698 (788)
                         +.|+.+++++|++.  +..|..+..+..+..+++.+|.
T Consensus       291 ~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          291 VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence               56888888888887  5666666777777777777764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=3.6e-29  Score=263.05  Aligned_cols=288  Identities=20%  Similarity=0.256  Sum_probs=163.9

Q ss_pred             CCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEcc
Q 003888          348 NLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDIS  427 (788)
Q Consensus       348 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  427 (788)
                      +++.++++++.++ .+|..+.  +.++.|++++|.+++..+..|..+++|++|++++|.+.+..|..|..+++|++|+++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            4555555555554 3333332  355556666665555444455556666666666666655555556666666666666


Q ss_pred             CCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCC--CCCccccCCCCCCEEEccCCcCcc
Q 003888          428 DNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNG--SIPNWVDGLSQLSHLILGHNNLEG  505 (788)
Q Consensus       428 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~  505 (788)
                      +|.++......+  .+|+.|++++|.+. .++...+..+++|+.|++++|.++.  ..+..+.++++|++|++++|.++.
T Consensus       109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (330)
T 1xku_A          109 KNQLKELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  185 (330)
T ss_dssp             SSCCSBCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CCcCCccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence            665553222211  34444444444442 2333336666777777777776643  455566667777777777777663


Q ss_pred             ccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeee
Q 003888          506 EVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIY  585 (788)
Q Consensus       506 ~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  585 (788)
                       +|..+.  ++|+.|++++|++.+..+..+..                                                
T Consensus       186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~------------------------------------------------  214 (330)
T 1xku_A          186 -IPQGLP--PSLTELHLDGNKITKVDAASLKG------------------------------------------------  214 (330)
T ss_dssp             -CCSSCC--TTCSEEECTTSCCCEECTGGGTT------------------------------------------------
T ss_pred             -CCcccc--ccCCEEECCCCcCCccCHHHhcC------------------------------------------------
Confidence             333332  56777777777666544444333                                                


Q ss_pred             cccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccC----
Q 003888          586 QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE----  661 (788)
Q Consensus       586 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~----  661 (788)
                          +++|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..    
T Consensus       215 ----l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~  289 (330)
T 1xku_A          215 ----LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN  289 (330)
T ss_dssp             ----CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCC
T ss_pred             ----CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccc
Confidence                336677777777776666666666777777777777766 34556666677777777777776555555533    


Q ss_pred             --CCCCCEEEccCCcCcc--cCCCcccccCCCCccccCCC
Q 003888          662 --LKTLAVFSVAYNNLSG--EIPEWTAQFATFNESSYEGN  697 (788)
Q Consensus       662 --l~~L~~L~l~~N~l~~--~~p~~~~~~~~~~~~~~~gn  697 (788)
                        .+.++.+++++|++..  ..|..+..+..+..+++++|
T Consensus       290 ~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          290 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             TTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             cccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence              2566667777776653  33444444555555555554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=2e-33  Score=310.79  Aligned_cols=308  Identities=19%  Similarity=0.131  Sum_probs=182.8

Q ss_pred             CCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCccccc----CccCcCCCCCccEEEcccCcCcccCChhhhhcCC-
Q 003888          200 HDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGP----FRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILP-  274 (788)
Q Consensus       200 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~----~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~-  274 (788)
                      ++|++|+++++.+.......++..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+..++..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            56788888888877655555567888999999999988753    3556777889999999999887655656666565 


Q ss_pred             ---CCcEEEcccCcCCC----CCcccccCCCCCCEEEcccCcCCCccchHHHh----cCCCCCEEEccCccCCCcC----
Q 003888          275 ---SLISFNISMNALDS----SIPSSFGNMNFLQILDLSNNQLTGEIPEHLAV----SCVNLEFLALSNNNLKGHM----  339 (788)
Q Consensus       275 ---~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~----~l~~L~~L~L~~n~i~~~~----  339 (788)
                         +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+..    ..++|++|++++|+++...    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               69999999998874    44777888999999999999887444443332    2446777777777776533    


Q ss_pred             cccCcCCCCCCEEeccCCcCCCcCCcccc-----CCCCCCEEEccCCcCCCC----CcccccCCCCCCEEeCCCCcccCC
Q 003888          340 FSRNFNLTNLRSLQLEGNHLEGEIPQSLS-----KCSSLEGLYLNNNSLSGK----IPRWLGNLTGLKHIIMPENHLEGP  410 (788)
Q Consensus       340 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~  410 (788)
                      +..+..+++|++|++++|.++...+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+.+.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            23334456677777776666543222222     244666666666666543    234444555666666666555432


Q ss_pred             cc-----ccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCc
Q 003888          411 IP-----VGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPN  485 (788)
Q Consensus       411 ~~-----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  485 (788)
                      ..     ..+..+++|++|++++|.+++...                   ..++.. +..+++|++|++++|.+++..+.
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~-------------------~~l~~~-l~~~~~L~~L~Ls~n~i~~~~~~  302 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGC-------------------GDLCRV-LRAKESLKELSLAGNELGDEGAR  302 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHH-------------------HHHHHH-HHHCTTCCEEECTTCCCHHHHHH
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHH-------------------HHHHHH-HhhCCCcceEECCCCCCchHHHH
Confidence            11     111234455555555554431100                   001111 34455566666666655432222


Q ss_pred             ccc-----CCCCCCEEEccCCcCccc----cCcccCCCCCCCEEEccCCcC
Q 003888          486 WVD-----GLSQLSHLILGHNNLEGE----VPVQLCELNQLQLLDLSNNNL  527 (788)
Q Consensus       486 ~~~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~i  527 (788)
                      .+.     ..++|++|++++|.+++.    ++..+..+++|+.|++++|++
T Consensus       303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  353 (461)
T 1z7x_W          303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL  353 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBC
T ss_pred             HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcc
Confidence            221     124555555555555533    233344445555555555544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=1.1e-30  Score=271.51  Aligned_cols=251  Identities=31%  Similarity=0.490  Sum_probs=174.6

Q ss_pred             CCCCEEeccCCcCCC--cCCccccCCCCCCEEEccC-CcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccE
Q 003888          347 TNLRSLQLEGNHLEG--EIPQSLSKCSSLEGLYLNN-NSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQI  423 (788)
Q Consensus       347 ~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  423 (788)
                      .+++.|++++|.+++  .+|..+.++++|++|++++ |.+.+..|..|..+++|++|++++|.+.+..|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            456667777777666  5666677777777777773 6666666666777777777777777776666666777777777


Q ss_pred             EEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCC-CCCEEEccCCc
Q 003888          424 LDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLS-QLSHLILGHNN  502 (788)
Q Consensus       424 L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~  502 (788)
                      |++++|.+++..+                       .. +..+++|++|++++|++++..|..+..++ +|++|++++|+
T Consensus       130 L~Ls~N~l~~~~p-----------------------~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          130 LDFSYNALSGTLP-----------------------PS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             EECCSSEEESCCC-----------------------GG-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             EeCCCCccCCcCC-----------------------hH-HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence            7777776653322                       21 45556666666666666666666666665 67777777777


Q ss_pred             CccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccce
Q 003888          503 LEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIA  582 (788)
Q Consensus       503 l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  582 (788)
                      +++..|..+..++ |+.|++++|++.+..|..+..                                             
T Consensus       186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~---------------------------------------------  219 (313)
T 1ogq_A          186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS---------------------------------------------  219 (313)
T ss_dssp             EEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT---------------------------------------------
T ss_pred             eeccCChHHhCCc-ccEEECcCCcccCcCCHHHhc---------------------------------------------
Confidence            7666666666665 777777777766555544433                                             


Q ss_pred             eeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCC
Q 003888          583 YIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL  662 (788)
Q Consensus       583 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  662 (788)
                             +++|+.|++++|.+++..|. +..+++|++|++++|++++.+|..|..+++|++|++++|++++.+|.. ..+
T Consensus       220 -------l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l  290 (313)
T 1ogq_A          220 -------DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL  290 (313)
T ss_dssp             -------TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred             -------CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccc
Confidence                   34677777777777655554 677788888888888888778888888888888888888888878776 777


Q ss_pred             CCCCEEEccCCcCc
Q 003888          663 KTLAVFSVAYNNLS  676 (788)
Q Consensus       663 ~~L~~L~l~~N~l~  676 (788)
                      ++|+.+++++|+..
T Consensus       291 ~~L~~l~l~~N~~l  304 (313)
T 1ogq_A          291 QRFDVSAYANNKCL  304 (313)
T ss_dssp             GGSCGGGTCSSSEE
T ss_pred             cccChHHhcCCCCc
Confidence            88888888888743

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=2.5e-28  Score=267.15  Aligned_cols=252  Identities=23%  Similarity=0.253  Sum_probs=201.9

Q ss_pred             CCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEcc
Q 003888          348 NLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDIS  427 (788)
Q Consensus       348 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  427 (788)
                      ..+.++.++..++ .+|..+.  ++++.|++++|.+....+..|.++++|++|++++|.+....+..|.++++|++|+++
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            4567888888887 5666554  578889999998887777888888889999998888887777888888888888888


Q ss_pred             CCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCC-cCccc
Q 003888          428 DNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHN-NLEGE  506 (788)
Q Consensus       428 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~  506 (788)
                      +|.++..                        +...|..+++|++|++++|.++...+..|..+++|++|++++| .+...
T Consensus       121 ~n~l~~~------------------------~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i  176 (440)
T 3zyj_A          121 DNRLTTI------------------------PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI  176 (440)
T ss_dssp             SSCCSSC------------------------CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred             CCcCCee------------------------CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCccee
Confidence            8877633                        3333677889999999999998777778888999999999884 45555


Q ss_pred             cCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeec
Q 003888          507 VPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQ  586 (788)
Q Consensus       507 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (788)
                      .+..|.++++|+.|++++|++... |. +..                                                 
T Consensus       177 ~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~-------------------------------------------------  205 (440)
T 3zyj_A          177 SEGAFEGLSNLRYLNLAMCNLREI-PN-LTP-------------------------------------------------  205 (440)
T ss_dssp             CTTTTTTCSSCCEEECTTSCCSSC-CC-CTT-------------------------------------------------
T ss_pred             CcchhhcccccCeecCCCCcCccc-cc-cCC-------------------------------------------------
Confidence            556788899999999999988633 21 111                                                 


Q ss_pred             ccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCC
Q 003888          587 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLA  666 (788)
Q Consensus       587 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  666 (788)
                         +++|+.|+|++|++++..|..|.++++|+.|+|++|+++++.+..|.++++|++|+|++|++++..+..|..+++|+
T Consensus       206 ---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  282 (440)
T 3zyj_A          206 ---LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE  282 (440)
T ss_dssp             ---CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred             ---CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence               45788888888888888888888888888888888888888888888888888888888888877777788888888


Q ss_pred             EEEccCCcCcccCC
Q 003888          667 VFSVAYNNLSGEIP  680 (788)
Q Consensus       667 ~L~l~~N~l~~~~p  680 (788)
                      .|++++|++.|...
T Consensus       283 ~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          283 RIHLHHNPWNCNCD  296 (440)
T ss_dssp             EEECCSSCEECSST
T ss_pred             EEEcCCCCccCCCC
Confidence            88888888877543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=4.4e-28  Score=266.22  Aligned_cols=252  Identities=21%  Similarity=0.228  Sum_probs=204.8

Q ss_pred             CCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEcc
Q 003888          348 NLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDIS  427 (788)
Q Consensus       348 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  427 (788)
                      ....++.++..++ .+|..+.  ++++.|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|+++
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            3567788887777 5665544  578888888888887777888888888888888888887777788888888888888


Q ss_pred             CCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccC-CcCccc
Q 003888          428 DNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGH-NNLEGE  506 (788)
Q Consensus       428 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~  506 (788)
                      +|.++.                        ++...|..+++|++|++++|+++...+..|..+++|++|++++ +.+...
T Consensus       132 ~n~l~~------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i  187 (452)
T 3zyi_A          132 DNWLTV------------------------IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI  187 (452)
T ss_dssp             SSCCSB------------------------CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred             CCcCCc------------------------cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcccc
Confidence            887763                        3333477788999999999999877777888999999999998 455555


Q ss_pred             cCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeec
Q 003888          507 VPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQ  586 (788)
Q Consensus       507 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (788)
                      .+..|.++++|+.|++++|++.+. | .+..                                                 
T Consensus       188 ~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~-------------------------------------------------  216 (452)
T 3zyi_A          188 SEGAFEGLFNLKYLNLGMCNIKDM-P-NLTP-------------------------------------------------  216 (452)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSSC-C-CCTT-------------------------------------------------
T ss_pred             ChhhccCCCCCCEEECCCCccccc-c-cccc-------------------------------------------------
Confidence            566788999999999999988743 2 1111                                                 


Q ss_pred             ccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCC
Q 003888          587 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLA  666 (788)
Q Consensus       587 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  666 (788)
                         +++|+.|+|++|.+++..|..|.++++|+.|+|++|+++++.+..|.++++|++|+|++|++++..+..+..+++|+
T Consensus       217 ---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  293 (452)
T 3zyi_A          217 ---LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV  293 (452)
T ss_dssp             ---CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred             ---cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence               45889999999999988888999999999999999999988888899999999999999999877777888889999


Q ss_pred             EEEccCCcCcccCC
Q 003888          667 VFSVAYNNLSGEIP  680 (788)
Q Consensus       667 ~L~l~~N~l~~~~p  680 (788)
                      .|++++|++.|...
T Consensus       294 ~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          294 ELHLHHNPWNCDCD  307 (452)
T ss_dssp             EEECCSSCEECSTT
T ss_pred             EEEccCCCcCCCCC
Confidence            99999998887654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=2.1e-28  Score=254.26  Aligned_cols=285  Identities=22%  Similarity=0.277  Sum_probs=215.2

Q ss_pred             CEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCC--ccccccCCCCccEEEcc
Q 003888          350 RSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGP--IPVGFCQLYSLQILDIS  427 (788)
Q Consensus       350 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~  427 (788)
                      +.++.+++.++ .+|..+.  ++|++|++++|.++...+..|..+++|++|++++|.+...  .+..+..+++|++|+++
T Consensus        10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            57788888887 5565443  5888889988888865555678888888888888887743  25566677888888888


Q ss_pred             CCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCC-ccccCCCCCCEEEccCCcCccc
Q 003888          428 DNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIP-NWVDGLSQLSHLILGHNNLEGE  506 (788)
Q Consensus       428 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~  506 (788)
                      +|.+.                        .++.. +..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+.
T Consensus        87 ~n~i~------------------------~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~  141 (306)
T 2z66_A           87 FNGVI------------------------TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA  141 (306)
T ss_dssp             SCSEE------------------------EEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred             CCccc------------------------cChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc
Confidence            88664                        22222 6778899999999999886654 5788899999999999999888


Q ss_pred             cCcccCCCCCCCEEEccCCcCCC-CCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeee
Q 003888          507 VPVQLCELNQLQLLDLSNNNLHG-PIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIY  585 (788)
Q Consensus       507 ~~~~l~~l~~L~~L~Ls~n~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  585 (788)
                      .+..+..+++|++|++++|.+.+ ..|..+..                                                
T Consensus       142 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~------------------------------------------------  173 (306)
T 2z66_A          142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE------------------------------------------------  173 (306)
T ss_dssp             STTTTTTCTTCCEEECTTCEEGGGEECSCCTT------------------------------------------------
T ss_pred             chhhcccCcCCCEEECCCCccccccchhHHhh------------------------------------------------
Confidence            88888899999999999998875 34444443                                                


Q ss_pred             cccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCC-C
Q 003888          586 QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK-T  664 (788)
Q Consensus       586 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~  664 (788)
                          +++|+.|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..++ +
T Consensus       174 ----l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~  249 (306)
T 2z66_A          174 ----LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS  249 (306)
T ss_dssp             ----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTT
T ss_pred             ----CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhcc
Confidence                45899999999999888888899999999999999999988777888899999999999999988888888884 8


Q ss_pred             CCEEEccCCcCcccCCC-ccccc-CCCCccccCCCCCCCCCCCCCCCCCCCCCcccCCC
Q 003888          665 LAVFSVAYNNLSGEIPE-WTAQF-ATFNESSYEGNTFLCGLPLPICRSPATMSEASIGN  721 (788)
Q Consensus       665 L~~L~l~~N~l~~~~p~-~~~~~-~~~~~~~~~gn~~~c~~~l~~c~~~~~~~~~~~~~  721 (788)
                      |++|++++|+++|..+. ++.+| ..........+..       .|..|....+.++..
T Consensus       250 L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~-------~C~~p~~~~g~~~~~  301 (306)
T 2z66_A          250 LAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM-------ECATPSDKQGMPVLS  301 (306)
T ss_dssp             CCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGC-------BEEESGGGTTCBGGG
T ss_pred             CCEEEccCCCeecccChHHHHHHHHhhhhhhcccccc-------ccCCchhhCCceeee
Confidence            99999999999875431 11111 1222233333333       466666666654433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=2.2e-28  Score=259.62  Aligned_cols=208  Identities=25%  Similarity=0.254  Sum_probs=146.7

Q ss_pred             CCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEE
Q 003888          297 MNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGL  376 (788)
Q Consensus       297 l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  376 (788)
                      ++.....+.+++.++ .+|..+.   ++|++|++++|+++++.+..+.++++|++|++++|.+++..+..|.++++|++|
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            444455677777776 6776543   477777887777777666677777888888888887776666777777888888


Q ss_pred             EccCCcCCCCCcccccCCCCCCEEeCCCCcccCCcc-ccccCCCCccEEEccCCc-CCCCCCCCCCCCCccEEEccCccc
Q 003888          377 YLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIP-VGFCQLYSLQILDISDNN-ISGSLPSCFHPLSIEQVHLSKNML  454 (788)
Q Consensus       377 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~L~~L~l~~n~~  454 (788)
                      ++++|.+++..+..|..+++|++|++++|.+....+ ..+..+++|++|++++|. +.                      
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~----------------------  163 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT----------------------  163 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC----------------------
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc----------------------
Confidence            888887775555557777777777777777775433 356677777777777763 32                      


Q ss_pred             ccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCC
Q 003888          455 HGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIP  532 (788)
Q Consensus       455 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~  532 (788)
                        .++...+..+++|++|++++|++++..|..+..+++|++|++++|.++......+..+++|+.|++++|++.+..+
T Consensus       164 --~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  239 (353)
T 2z80_A          164 --KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF  239 (353)
T ss_dssp             --EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCC
T ss_pred             --ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccc
Confidence              2333336677788888888888877777778888888888888888764444445557788888888887765443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=5e-28  Score=256.79  Aligned_cols=280  Identities=19%  Similarity=0.206  Sum_probs=211.8

Q ss_pred             cCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEE
Q 003888          321 SCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHI  400 (788)
Q Consensus       321 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  400 (788)
                      .|+.....+.+++.++.++. .+.  ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|++|
T Consensus        29 ~C~~~~~c~~~~~~l~~iP~-~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           29 SCDRNGICKGSSGSLNSIPS-GLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             EECTTSEEECCSTTCSSCCT-TCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCeEeeCCCCCcccccc-ccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            35666677888888877543 222  578888888888886666678888888888888888887667778888888888


Q ss_pred             eCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCc-ccccCCCCCcEEEccCC-c
Q 003888          401 IMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKR-GTFFHCSSLVTLDLSYN-R  478 (788)
Q Consensus       401 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~L~~n-~  478 (788)
                      ++++|.+++..+..+..+++|++|++++|.+++.                        +. ..+..+++|++|++++| .
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l------------------------~~~~~~~~l~~L~~L~l~~n~~  161 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTL------------------------GETSLFSHLTKLQILRVGNMDT  161 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSS------------------------CSSCSCTTCTTCCEEEEEESSS
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCccc------------------------CchhhhccCCCCcEEECCCCcc
Confidence            8888888866665678888888888888877632                        22 23778899999999998 4


Q ss_pred             CCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccc
Q 003888          479 LNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLV  558 (788)
Q Consensus       479 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (788)
                      +.+..+..+.++++|++|++++|.+++..|..+..+++|++|++++|++....+..+                       
T Consensus       162 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-----------------------  218 (353)
T 2z80_A          162 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFV-----------------------  218 (353)
T ss_dssp             CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHH-----------------------
T ss_pred             ccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhh-----------------------
Confidence            666667788889999999999999998888889999999999999998742111100                       


Q ss_pred             cccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCccccc---CcccCCeEeCCCCcCCcc----C
Q 003888          559 MDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIG---NLTRIQTLNLSHNNLTGL----I  631 (788)
Q Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~Ls~N~l~~~----~  631 (788)
                                                   ..+++|+.|++++|.+++..+..+.   ..+.++.++++++.+++.    +
T Consensus       219 -----------------------------~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l  269 (353)
T 2z80_A          219 -----------------------------DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV  269 (353)
T ss_dssp             -----------------------------HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred             -----------------------------hhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence                                         1145889999999998876554443   356778888888887752    4


Q ss_pred             CccccCCCCCCEEECcCCcccccCCcc-ccCCCCCCEEEccCCcCcccCC
Q 003888          632 PSTFSNLKHIESLDLSYNKLNGKIPHQ-LVELKTLAVFSVAYNNLSGEIP  680 (788)
Q Consensus       632 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~l~~N~l~~~~p  680 (788)
                      |+.+..+++|++|++++|+++ .+|.. |..+++|++|++++|+++|.+|
T Consensus       270 ~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          270 MKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             HHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            667788888999999999888 44544 5788889999999998888766

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.2e-27  Score=248.73  Aligned_cols=282  Identities=23%  Similarity=0.234  Sum_probs=232.0

Q ss_pred             CCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCC--cccccCCCCCCEEeC
Q 003888          325 LEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKI--PRWLGNLTGLKHIIM  402 (788)
Q Consensus       325 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~l  402 (788)
                      -+.++.+++.++.++.. +  .++|++|++++|.++...+..|.++++|++|++++|.++...  +..+..+++|++|++
T Consensus         9 ~~~l~c~~~~l~~ip~~-~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A            9 GTEIRCNSKGLTSVPTG-I--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TTEEECCSSCCSSCCSC-C--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CCEEEcCCCCcccCCCC-C--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            35788999888876543 2  368999999999999666666899999999999999987432  566778999999999


Q ss_pred             CCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCC
Q 003888          403 PENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGS  482 (788)
Q Consensus       403 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  482 (788)
                      ++|.+. ..+..+..+++|++|++++|.+++..+                       ...+..+++|++|++++|.+.+.
T Consensus        86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------~~~~~~l~~L~~L~l~~n~l~~~  141 (306)
T 2z66_A           86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSE-----------------------FSVFLSLRNLIYLDISHTHTRVA  141 (306)
T ss_dssp             CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTT-----------------------TTTTTTCTTCCEEECTTSCCEEC
T ss_pred             CCCccc-cChhhcCCCCCCCEEECCCCccccccc-----------------------chhhhhccCCCEEECCCCcCCcc
Confidence            999998 466678899999999999998864322                       12367788999999999999888


Q ss_pred             CCccccCCCCCCEEEccCCcCcc-ccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCccccccccc
Q 003888          483 IPNWVDGLSQLSHLILGHNNLEG-EVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDS  561 (788)
Q Consensus       483 ~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  561 (788)
                      .+..+..+++|++|++++|.+++ ..|..+..+++|+.|++++|++.+..|..+..                        
T Consensus       142 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------------  197 (306)
T 2z66_A          142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS------------------------  197 (306)
T ss_dssp             STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT------------------------
T ss_pred             chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcC------------------------
Confidence            88889999999999999999986 57888999999999999999998776666654                        


Q ss_pred             ccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCC-C
Q 003888          562 MMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLK-H  640 (788)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~  640 (788)
                                                  +++|+.|++++|.+++..+..+..+++|+.|++++|++++..|..+..++ +
T Consensus       198 ----------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~  249 (306)
T 2z66_A          198 ----------------------------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS  249 (306)
T ss_dssp             ----------------------------CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTT
T ss_pred             ----------------------------CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhcc
Confidence                                        45899999999999988888899999999999999999999999999984 9


Q ss_pred             CCEEECcCCcccccCCc--cccCCCCCCEEEccCCcCcccCCCcccc
Q 003888          641 IESLDLSYNKLNGKIPH--QLVELKTLAVFSVAYNNLSGEIPEWTAQ  685 (788)
Q Consensus       641 L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~l~~N~l~~~~p~~~~~  685 (788)
                      |++|++++|++++..+.  ...-+...+.+.+..+++.|..|..+..
T Consensus       250 L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g  296 (306)
T 2z66_A          250 LAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG  296 (306)
T ss_dssp             CCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred             CCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence            99999999999875431  1222344555667788899888876543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=2.7e-29  Score=286.99  Aligned_cols=432  Identities=13%  Similarity=0.081  Sum_probs=254.3

Q ss_pred             HHHhhcCCCCcEEeCCCCCCCCCCCCCCc-----------ccccCCCCCCEEEcCCCCCCcCCChhhcCC-C-CCCEEEC
Q 003888           39 QIIRESMPSLKYLSMSDSTLGTNSSRILD-----------QGLCSLMHLQELYIDNNDLRGSLPWCLANM-T-SLRILDV  105 (788)
Q Consensus        39 ~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~-----------~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l-~-~L~~L~L  105 (788)
                      ..+. ++++|++|+++++......+.+|.           .....+++|++|+|++|.+++..+..+... + +|++|++
T Consensus        67 ~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L  145 (592)
T 3ogk_B           67 RLSR-RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL  145 (592)
T ss_dssp             HHHH-HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred             HHHH-hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence            3444 888899999987542111122221           011267889999999888877666666653 3 4999999


Q ss_pred             CCCc-CcC-cCChhhhcCCCCCCEEECcCccccccCC---ccccccCCCCcEEEccCccccccccccccCCCCcccccEE
Q 003888          106 SSNQ-LTG-SISSSPLVHLTSIEELMLSNNHFQIPIS---LEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQAL  180 (788)
Q Consensus       106 s~n~-~~~-~i~~~~l~~l~~L~~L~Ls~n~l~~~~~---~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L  180 (788)
                      ++|. ++. .++. ...++++|++|++++|.+.+...   .....++++|++|++++|.+.+..                
T Consensus       146 ~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~----------------  208 (592)
T 3ogk_B          146 DKCSGFTTDGLLS-IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKIS----------------  208 (592)
T ss_dssp             ESCEEEEHHHHHH-HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCC----------------
T ss_pred             cCCCCcCHHHHHH-HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccC----------------
Confidence            8886 221 1222 34578889999999888764311   123456788888888877654210                


Q ss_pred             EccCCCCCCCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCccc---ccCccCcCCCCCccEEEcc
Q 003888          181 SLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLT---GPFRLPIHSHRWLRFLDVS  257 (788)
Q Consensus       181 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~---~~~~~~l~~~~~L~~L~L~  257 (788)
                              ...++..+..+++|+.|++++|.+.+ ++.. +..+++|++|+++.....   ......+..+++|+.++++
T Consensus       209 --------~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~  278 (592)
T 3ogk_B          209 --------PKDLETIARNCRSLVSVKVGDFEILE-LVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLS  278 (592)
T ss_dssp             --------HHHHHHHHHHCTTCCEEECSSCBGGG-GHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEET
T ss_pred             --------HHHHHHHHhhCCCCcEEeccCccHHH-HHHH-HhhhhHHHhhcccccccccchHHHHHHhhccccccccCcc
Confidence                    01234455678889999999988766 5544 478899999999753322   2344566778888888888


Q ss_pred             cCcCcccCChhhhhcCCCCcEEEcccCcCCCCCc-ccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccC----
Q 003888          258 NNNFQGHIPVEIGDILPSLISFNISMNALDSSIP-SSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSN----  332 (788)
Q Consensus       258 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~----  332 (788)
                      ++... .+|..+ ..+++|++|++++|.+++... ..+.++++|++|+++ +.+.+.....+...+++|++|++++    
T Consensus       279 ~~~~~-~l~~~~-~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~  355 (592)
T 3ogk_B          279 YMGPN-EMPILF-PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADE  355 (592)
T ss_dssp             TCCTT-TGGGGG-GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCS
T ss_pred             ccchh-HHHHHH-hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccc
Confidence            76432 444433 346788999998888664433 335788888888888 4444344444445688888888883    


Q ss_pred             -------ccCCCcCccc-CcCCCCCCEEeccCCcCCCcCCccccC-CCCCCEEEcc----CCcCCCC-----CcccccCC
Q 003888          333 -------NNLKGHMFSR-NFNLTNLRSLQLEGNHLEGEIPQSLSK-CSSLEGLYLN----NNSLSGK-----IPRWLGNL  394 (788)
Q Consensus       333 -------n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~L~----~n~i~~~-----~~~~~~~l  394 (788)
                             +.++...... ...+++|++|+++.+.+++..+..+.. +++|++|+++    .|.+++.     .+..+.++
T Consensus       356 ~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~  435 (592)
T 3ogk_B          356 QGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC  435 (592)
T ss_dssp             STTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC
T ss_pred             cccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhC
Confidence                   4555432222 234677777777777776555545544 6777777775    4445432     11223445


Q ss_pred             CCCCEEeCCCCc--ccCCcccccc-CCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcE
Q 003888          395 TGLKHIIMPENH--LEGPIPVGFC-QLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVT  471 (788)
Q Consensus       395 ~~L~~L~l~~n~--~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  471 (788)
                      ++|++|+++.|.  +++.....+. .+++|++|++++|.++                       +......+..+++|++
T Consensus       436 ~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~-----------------------~~~~~~~~~~~~~L~~  492 (592)
T 3ogk_B          436 KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES-----------------------DEGLMEFSRGCPNLQK  492 (592)
T ss_dssp             TTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSS-----------------------HHHHHHHHTCCTTCCE
T ss_pred             CCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCC-----------------------HHHHHHHHhcCcccCe
Confidence            566666664432  3322222222 2455555555555443                       1111111345566666


Q ss_pred             EEccCCcCCCC-CCccccCCCCCCEEEccCCcCccccCccc-CCCCCCCEEEccC
Q 003888          472 LDLSYNRLNGS-IPNWVDGLSQLSHLILGHNNLEGEVPVQL-CELNQLQLLDLSN  524 (788)
Q Consensus       472 L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~  524 (788)
                      |++++|.+++. .+.....+++|++|++++|++++.....+ ..+|.+....+..
T Consensus       493 L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          493 LEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS  547 (592)
T ss_dssp             EEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred             eeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence            66666665433 22223446666666666666654322222 2345554444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=2.3e-26  Score=252.60  Aligned_cols=250  Identities=26%  Similarity=0.251  Sum_probs=189.9

Q ss_pred             CCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCC
Q 003888          325 LEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPE  404 (788)
Q Consensus       325 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~  404 (788)
                      ...++.++..++.++. .+  .+++++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus        56 ~~~v~c~~~~l~~iP~-~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQ-GI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcCccCC-CC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            4567777777776443 22  25788888888888877777888888888888888888877777888888888888888


Q ss_pred             CcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCC-cCCCCC
Q 003888          405 NHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYN-RLNGSI  483 (788)
Q Consensus       405 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~  483 (788)
                      |.++...+..|..+++|++|++++|.+..                        ++...|..+++|+.|++++| .+....
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------------~~~~~~~~l~~L~~L~l~~~~~l~~i~  188 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIES------------------------IPSYAFNRVPSLMRLDLGELKKLEYIS  188 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCE------------------------ECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcce------------------------eCHhHHhcCCcccEEeCCCCCCccccC
Confidence            88887766677888888888888887652                        23333677788888888874 444444


Q ss_pred             CccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCccccccccccc
Q 003888          484 PNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMM  563 (788)
Q Consensus       484 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  563 (788)
                      +..|.++++|++|++++|++++. | .+..+++|+.|++++|++.+..|..|..                          
T Consensus       189 ~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------------------------  240 (452)
T 3zyi_A          189 EGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHG--------------------------  240 (452)
T ss_dssp             TTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTT--------------------------
T ss_pred             hhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccC--------------------------
Confidence            45677888888888888888744 3 4777888888888888887666655544                          


Q ss_pred             chhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCE
Q 003888          564 IPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIES  643 (788)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  643 (788)
                                                +++|+.|++++|++++..+..|..+++|+.|+|++|+++++.+..|..+++|++
T Consensus       241 --------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  294 (452)
T 3zyi_A          241 --------------------------LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVE  294 (452)
T ss_dssp             --------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCE
T ss_pred             --------------------------ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCE
Confidence                                      347888888888888888888888888888888888888877778888888888


Q ss_pred             EECcCCcccccC
Q 003888          644 LDLSYNKLNGKI  655 (788)
Q Consensus       644 L~Ls~N~l~~~~  655 (788)
                      |++++|++.+..
T Consensus       295 L~L~~Np~~CdC  306 (452)
T 3zyi_A          295 LHLHHNPWNCDC  306 (452)
T ss_dssp             EECCSSCEECST
T ss_pred             EEccCCCcCCCC
Confidence            888888877543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=3e-26  Score=250.71  Aligned_cols=248  Identities=29%  Similarity=0.279  Sum_probs=140.2

Q ss_pred             CCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCC
Q 003888          325 LEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPE  404 (788)
Q Consensus       325 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~  404 (788)
                      ...++.++..++.++. .+  .++++.|++++|+++...+..|.++++|++|++++|.+.+..+..|.++++|++|++++
T Consensus        45 ~~~v~c~~~~l~~iP~-~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLREVPD-GI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCSSCCS-CC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcCcCCC-CC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            3455555555554332 22  14566666666666655555566666666666666666555555566666666666666


Q ss_pred             CcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCC-cCCCCC
Q 003888          405 NHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYN-RLNGSI  483 (788)
Q Consensus       405 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~  483 (788)
                      |.++...+..|..+++|++|++++|.+..                        ++...|..+++|++|++++| .+....
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~------------------------~~~~~~~~l~~L~~L~l~~~~~l~~i~  177 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIES------------------------IPSYAFNRIPSLRRLDLGELKRLSYIS  177 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCE------------------------ECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccc------------------------cCHHHhhhCcccCEeCCCCCCCcceeC
Confidence            66665544555666666666666665542                        22222455566666666653 333333


Q ss_pred             CccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCccccccccccc
Q 003888          484 PNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMM  563 (788)
Q Consensus       484 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  563 (788)
                      +..|.++++|++|++++|+++. +| .+..+++|+.|++++|++.+..|..|..                          
T Consensus       178 ~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------------------------  229 (440)
T 3zyj_A          178 EGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQG--------------------------  229 (440)
T ss_dssp             TTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTT--------------------------
T ss_pred             cchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhcc--------------------------
Confidence            3355556666666666666652 22 3555666666666666665554444443                          


Q ss_pred             chhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCE
Q 003888          564 IPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIES  643 (788)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  643 (788)
                                                +++|+.|++++|++++..+..|.++++|+.|+|++|+++++.+..|..+++|+.
T Consensus       230 --------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  283 (440)
T 3zyj_A          230 --------------------------LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER  283 (440)
T ss_dssp             --------------------------CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCE
T ss_pred             --------------------------CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCE
Confidence                                      235666666666666655666666666666666666666555555666666666


Q ss_pred             EECcCCcccc
Q 003888          644 LDLSYNKLNG  653 (788)
Q Consensus       644 L~Ls~N~l~~  653 (788)
                      |+|++|++.+
T Consensus       284 L~L~~Np~~C  293 (440)
T 3zyj_A          284 IHLHHNPWNC  293 (440)
T ss_dssp             EECCSSCEEC
T ss_pred             EEcCCCCccC
Confidence            6666666554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=5.8e-27  Score=240.66  Aligned_cols=225  Identities=25%  Similarity=0.281  Sum_probs=119.9

Q ss_pred             CEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCC-CCCccEEEccCcccccccCcccccCCCCCcEEEccC
Q 003888          398 KHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSY  476 (788)
Q Consensus       398 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~  476 (788)
                      +.++.+++.++. +|..+  .++|++|++++|.+++..+..+. +++|+.|++++|.+.+..+. .|..+++|++|++++
T Consensus        14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA-AFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh-hcCCccCCCEEeCCC
Confidence            566666666663 34332  35677777777777655444333 44555555555555332222 255555555555555


Q ss_pred             Cc-CCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCccc
Q 003888          477 NR-LNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFET  555 (788)
Q Consensus       477 n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (788)
                      |. ++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..                  
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------  151 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD------------------  151 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------------
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc------------------
Confidence            54 44444455555555555555555555544555555555555555555555433333322                  


Q ss_pred             ccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccc
Q 003888          556 SLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTF  635 (788)
Q Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~  635 (788)
                                                        +++|+.|++++|++++..+..|..+++|++|++++|++++..|..|
T Consensus       152 ----------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  197 (285)
T 1ozn_A          152 ----------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF  197 (285)
T ss_dssp             ----------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             ----------------------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHc
Confidence                                              2245555555555554444445555555555555555555555555


Q ss_pred             cCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCccc
Q 003888          636 SNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGE  678 (788)
Q Consensus       636 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~  678 (788)
                      ..+++|++|++++|++++..+..+..+++|+.|++++|++.+.
T Consensus       198 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  240 (285)
T 1ozn_A          198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (285)
T ss_dssp             TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             cCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence            5555555555555555544444455555555555555555543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1e-26  Score=238.86  Aligned_cols=255  Identities=24%  Similarity=0.256  Sum_probs=181.3

Q ss_pred             CEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCC
Q 003888          350 RSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDN  429 (788)
Q Consensus       350 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  429 (788)
                      +.++.+++.++ .+|..+  .++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            45566666555 334322  346666666666666555556666666777777766666655666666777777777776


Q ss_pred             c-CCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccC
Q 003888          430 N-ISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVP  508 (788)
Q Consensus       430 ~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  508 (788)
                      . +...                        +...+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+
T Consensus        91 ~~l~~~------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  146 (285)
T 1ozn_A           91 AQLRSV------------------------DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD  146 (285)
T ss_dssp             TTCCCC------------------------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCcccc------------------------CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence            5 4322                        22225666777777777777777667777778888888888888876666


Q ss_pred             cccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeeccc
Q 003888          509 VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGK  588 (788)
Q Consensus       509 ~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (788)
                      ..+..+++|+.|++++|++.+..+..+..                                                   
T Consensus       147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------------------------------------------  175 (285)
T 1ozn_A          147 DTFRDLGNLTHLFLHGNRISSVPERAFRG---------------------------------------------------  175 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTT---------------------------------------------------
T ss_pred             hHhccCCCccEEECCCCcccccCHHHhcC---------------------------------------------------
Confidence            66778888888888888777555444443                                                   


Q ss_pred             ccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEE
Q 003888          589 VLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVF  668 (788)
Q Consensus       589 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  668 (788)
                       +++|+.|++++|.+++..|..|..+++|+.|++++|++++..+..+..+++|++|++++|++.+..+.. .-...++.+
T Consensus       176 -l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~  253 (285)
T 1ozn_A          176 -LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKF  253 (285)
T ss_dssp             -CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHC
T ss_pred             -ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhc
Confidence             347888888888888888889999999999999999999887788999999999999999998655432 122345555


Q ss_pred             EccCCcCcccCCCccc
Q 003888          669 SVAYNNLSGEIPEWTA  684 (788)
Q Consensus       669 ~l~~N~l~~~~p~~~~  684 (788)
                      ..+.+.+.|..|+.+.
T Consensus       254 ~~~~~~~~c~~p~~l~  269 (285)
T 1ozn_A          254 RGSSSEVPCSLPQRLA  269 (285)
T ss_dssp             CSEECCCBEEESGGGT
T ss_pred             ccccCccccCCchHhC
Confidence            6778888888887543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=2.3e-28  Score=279.22  Aligned_cols=424  Identities=14%  Similarity=0.076  Sum_probs=291.9

Q ss_pred             CCCCCCCccEEEcccCCcccc-----------cc---hhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccC-CC-CCC
Q 003888           14 GFPHFKSLDHLDMVFARTALN-----------TS---FLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCS-LM-HLQ   77 (788)
Q Consensus        14 ~l~~~~~L~~L~L~~~~~~~~-----------~~---~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~-l~-~L~   77 (788)
                      .+..+++|++|++  +++...           +.   ....+...+++|++|+|++|.+.   ...+ ..+.. ++ +|+
T Consensus        68 ~~~~~~~L~~L~L--~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~---~~~~-~~l~~~~~~~L~  141 (592)
T 3ogk_B           68 LSRRFPNLRSLKL--KGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVS---DLDL-DRLAKARADDLE  141 (592)
T ss_dssp             HHHHCTTCSEEEE--ECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC---HHHH-HHHHHHHGGGCC
T ss_pred             HHHhCCCCeEEEe--cCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEec---HHHH-HHHHHhccccCc
Confidence            4567888999999  765321           11   12223337899999999998874   3322 23444 33 499


Q ss_pred             EEEcCCCC-CCc-CCChhhcCCCCCCEEECCCCcCcCc----CChhhhcCCCCCCEEECcCccccccC---CccccccCC
Q 003888           78 ELYIDNND-LRG-SLPWCLANMTSLRILDVSSNQLTGS----ISSSPLVHLTSIEELMLSNNHFQIPI---SLEPLFNHS  148 (788)
Q Consensus        78 ~L~Ls~n~-l~~-~~~~~l~~l~~L~~L~Ls~n~~~~~----i~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~~l~~l~  148 (788)
                      +|+|++|. ++. .++....++++|++|+|++|.+++.    ++. .+.++++|++|++++|.+.+..   ....+.+++
T Consensus       142 ~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~  220 (592)
T 3ogk_B          142 TLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE-LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR  220 (592)
T ss_dssp             EEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH-HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCT
T ss_pred             EEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH-HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCC
Confidence            99999886 221 1333445889999999999988644    333 4567899999999999876211   112456789


Q ss_pred             CCcEEEccCccccccccccccCCCCcccccEEEccCCCCCC---CCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCC
Q 003888          149 RLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDG---VTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNT  225 (788)
Q Consensus       149 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~  225 (788)
                      +|++|++++|.+.+.. ..   .....+|++|+++. +...   ...+..+..+++|+.++++++. ...+|.. +..++
T Consensus       221 ~L~~L~L~~~~~~~l~-~~---~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~-~~~~~  293 (592)
T 3ogk_B          221 SLVSVKVGDFEILELV-GF---FKAAANLEEFCGGS-LNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPIL-FPFAA  293 (592)
T ss_dssp             TCCEEECSSCBGGGGH-HH---HHHCTTCCEEEECB-CCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGG-GGGGG
T ss_pred             CCcEEeccCccHHHHH-HH---HhhhhHHHhhcccc-cccccchHHHHHHhhccccccccCccccc-hhHHHHH-HhhcC
Confidence            9999999998876522 11   12234788888832 2221   3345667788999999998853 3334544 46889


Q ss_pred             CCCEEEcCCCcccccCc-cCcCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEccc-----------CcCCCCCc-c
Q 003888          226 KLRQLYLVNDSLTGPFR-LPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISM-----------NALDSSIP-S  292 (788)
Q Consensus       226 ~L~~L~L~~~~l~~~~~-~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~-----------n~~~~~~~-~  292 (788)
                      +|++|++++|.+++... ..+..+++|++|+++ +.+.+.....+...+++|++|++++           +.++.... .
T Consensus       294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~  372 (592)
T 3ogk_B          294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA  372 (592)
T ss_dssp             GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH
T ss_pred             CCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH
Confidence            99999999999765443 336789999999999 5555444455556689999999993           45553322 2


Q ss_pred             cccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEcc----CccCCCcC-----cccCcCCCCCCEEeccCCc--CCC
Q 003888          293 SFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALS----NNNLKGHM-----FSRNFNLTNLRSLQLEGNH--LEG  361 (788)
Q Consensus       293 ~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~----~n~i~~~~-----~~~~~~l~~L~~L~l~~n~--l~~  361 (788)
                      ....+++|++|+++.+.+++..+..+...+++|++|+++    .|.+++.+     ...+.++++|++|+++.|.  +++
T Consensus       373 l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~  452 (592)
T 3ogk_B          373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD  452 (592)
T ss_dssp             HHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred             HHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence            245689999999999999877777777669999999996    56777642     2224568999999998654  554


Q ss_pred             cCCcccc-CCCCCCEEEccCCcCCCC-CcccccCCCCCCEEeCCCCcccCCc-cccccCCCCccEEEccCCcCCCCCCCC
Q 003888          362 EIPQSLS-KCSSLEGLYLNNNSLSGK-IPRWLGNLTGLKHIIMPENHLEGPI-PVGFCQLYSLQILDISDNNISGSLPSC  438 (788)
Q Consensus       362 ~~~~~l~-~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~  438 (788)
                      ..+..+. .+++|++|++++|.+++. .+..+..+++|++|++++|.+++.. +.....+++|++|++++|++++.....
T Consensus       453 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~  532 (592)
T 3ogk_B          453 LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDL  532 (592)
T ss_dssp             HHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTG
T ss_pred             HHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHH
Confidence            4443343 488999999999998753 3445678899999999999986543 333457899999999999987654333


Q ss_pred             CC--CCCccEEEccCc
Q 003888          439 FH--PLSIEQVHLSKN  452 (788)
Q Consensus       439 ~~--~~~L~~L~l~~n  452 (788)
                      +.  .+.+....+..+
T Consensus       533 l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          533 MQMARPYWNIELIPSR  548 (592)
T ss_dssp             GGGCCTTEEEEEECCC
T ss_pred             HHHhCCCcEEEEecCc
Confidence            32  455555444443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=1.1e-25  Score=235.27  Aligned_cols=233  Identities=21%  Similarity=0.311  Sum_probs=130.0

Q ss_pred             CCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEc
Q 003888          347 TNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDI  426 (788)
Q Consensus       347 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  426 (788)
                      ++++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            44555555555555 44555555666666666666665 45555566666666666666665 44556666677777777


Q ss_pred             cCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccc
Q 003888          427 SDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGE  506 (788)
Q Consensus       427 ~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  506 (788)
                      ++|++.+..|..+..     .         .+ .+.+..+++|++|++++|+++ .+|..+..+++|++|++++|++++ 
T Consensus       158 ~~n~~~~~~p~~~~~-----~---------~~-~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-  220 (328)
T 4fcg_A          158 RACPELTELPEPLAS-----T---------DA-SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-  220 (328)
T ss_dssp             EEETTCCCCCSCSEE-----E---------C--CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred             CCCCCccccChhHhh-----c---------cc-hhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-
Confidence            776655444432210     0         00 011445566666666666665 455556666666666666666653 


Q ss_pred             cCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeec
Q 003888          507 VPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQ  586 (788)
Q Consensus       507 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  586 (788)
                      +|..+..+++|+.|++++|++.                                                          
T Consensus       221 l~~~l~~l~~L~~L~Ls~n~~~----------------------------------------------------------  242 (328)
T 4fcg_A          221 LGPAIHHLPKLEELDLRGCTAL----------------------------------------------------------  242 (328)
T ss_dssp             CCGGGGGCTTCCEEECTTCTTC----------------------------------------------------------
T ss_pred             CchhhccCCCCCEEECcCCcch----------------------------------------------------------
Confidence            3334555555555555555544                                                          


Q ss_pred             ccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCC
Q 003888          587 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLA  666 (788)
Q Consensus       587 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  666 (788)
                                        +.+|..++.+++|++|+|++|++.+.+|..+.++++|++|++++|++.+.+|..+..+++|+
T Consensus       243 ------------------~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~  304 (328)
T 4fcg_A          243 ------------------RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC  304 (328)
T ss_dssp             ------------------CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred             ------------------hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence                              44444555555555555555555555555555555555555555555555555555555555


Q ss_pred             EEEccCCcC
Q 003888          667 VFSVAYNNL  675 (788)
Q Consensus       667 ~L~l~~N~l  675 (788)
                      .+++..|.+
T Consensus       305 ~l~l~~~~~  313 (328)
T 4fcg_A          305 IILVPPHLQ  313 (328)
T ss_dssp             EEECCGGGS
T ss_pred             EEeCCHHHH
Confidence            555555443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.3e-24  Score=244.18  Aligned_cols=84  Identities=26%  Similarity=0.272  Sum_probs=48.6

Q ss_pred             cccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEcc
Q 003888          592 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVA  671 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  671 (788)
                      +|+.|++++|.+++ +|   ..+++|+.|+|++|+|+.+. .   .+++|++|++++|+++ .+|..+..+++|+.|+++
T Consensus       222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp-~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLP-M---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  292 (622)
T ss_dssp             TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred             CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCC-c---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence            45555666665553 33   33456666666666666432 2   3456666666666666 456666666666666666


Q ss_pred             CCcCcccCCCccc
Q 003888          672 YNNLSGEIPEWTA  684 (788)
Q Consensus       672 ~N~l~~~~p~~~~  684 (788)
                      +|++++.+|..+.
T Consensus       293 ~N~l~~~~~~~l~  305 (622)
T 3g06_A          293 GNPLSERTLQALR  305 (622)
T ss_dssp             SCCCCHHHHHHHH
T ss_pred             CCCCCCcCHHHHH
Confidence            6666665555443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.2e-27  Score=249.35  Aligned_cols=263  Identities=22%  Similarity=0.218  Sum_probs=158.4

Q ss_pred             EEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcc
Q 003888          328 LALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHL  407 (788)
Q Consensus       328 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~  407 (788)
                      .+++.+.+.......+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+  +..+++|++|++++|.+
T Consensus        15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l   92 (317)
T 3o53_A           15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV   92 (317)
T ss_dssp             ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred             eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence            3444444433333333344455555555555554444455555555555555555543222  45555555555555554


Q ss_pred             cCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccc
Q 003888          408 EGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWV  487 (788)
Q Consensus       408 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  487 (788)
                      ++..     ..++|++|++++|.++                       +..    ...+++|++|++++|++++..+..+
T Consensus        93 ~~l~-----~~~~L~~L~l~~n~l~-----------------------~~~----~~~~~~L~~L~l~~N~l~~~~~~~~  140 (317)
T 3o53_A           93 QELL-----VGPSIETLHAANNNIS-----------------------RVS----CSRGQGKKNIYLANNKITMLRDLDE  140 (317)
T ss_dssp             EEEE-----ECTTCCEEECCSSCCS-----------------------EEE----ECCCSSCEEEECCSSCCCSGGGBCT
T ss_pred             cccc-----CCCCcCEEECCCCccC-----------------------CcC----ccccCCCCEEECCCCCCCCccchhh
Confidence            4221     1244455555444443                       222    1234678888888888887767777


Q ss_pred             cCCCCCCEEEccCCcCccccCcccC-CCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchh
Q 003888          488 DGLSQLSHLILGHNNLEGEVPVQLC-ELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPA  566 (788)
Q Consensus       488 ~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  566 (788)
                      ..+++|++|++++|.+++..+..+. .+++|++|++++|++++..+..                                
T Consensus       141 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--------------------------------  188 (317)
T 3o53_A          141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV--------------------------------  188 (317)
T ss_dssp             GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC--------------------------------
T ss_pred             hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccc--------------------------------
Confidence            7788888888888888876666553 6778888888888775321100                                


Q ss_pred             hhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEEC
Q 003888          567 EKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDL  646 (788)
Q Consensus       567 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  646 (788)
                                            .+++|+.|++++|++++..+ .+..+++|+.|++++|+++++ |..+..+++|++|++
T Consensus       189 ----------------------~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~l-~~~~~~l~~L~~L~l  244 (317)
T 3o53_A          189 ----------------------VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDL  244 (317)
T ss_dssp             ----------------------CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEEC
T ss_pred             ----------------------ccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccch-hhHhhcCCCCCEEEc
Confidence                                  13467777777777775433 477777777777777777753 556777777777777


Q ss_pred             cCCccc-ccCCccccCCCCCCEEEccCC-cCcccCC
Q 003888          647 SYNKLN-GKIPHQLVELKTLAVFSVAYN-NLSGEIP  680 (788)
Q Consensus       647 s~N~l~-~~~p~~l~~l~~L~~L~l~~N-~l~~~~p  680 (788)
                      ++|++. +.+|..+..++.|+.+++++| .+++..|
T Consensus       245 ~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~  280 (317)
T 3o53_A          245 RGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE  280 (317)
T ss_dssp             TTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred             cCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence            777777 556666777777777777743 4444333

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=3.1e-25  Score=231.79  Aligned_cols=223  Identities=21%  Similarity=0.244  Sum_probs=181.1

Q ss_pred             CCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEc
Q 003888          395 TGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDL  474 (788)
Q Consensus       395 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L  474 (788)
                      +.++.|++++|.+. .+|..+..+++|++|++++|.++                        .+|.. +..+++|++|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~------------------------~lp~~-~~~l~~L~~L~L  134 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM------------------------ELPDT-MQQFAGLETLTL  134 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC------------------------CCCSC-GGGGTTCSEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc------------------------chhHH-HhccCCCCEEEC
Confidence            45566666666655 44444555566666666665554                        34433 677888888888


Q ss_pred             cCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCC---------CCCCCEEEccCCcCCCCCCCCCcCcccccccC
Q 003888          475 SYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCE---------LNQLQLLDLSNNNLHGPIPPCFDNTTLHESSN  545 (788)
Q Consensus       475 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~---------l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~  545 (788)
                      ++|.++ .+|..+..+++|++|++++|++.+.+|..+..         +++|+.|++++|+++ .+|..+..        
T Consensus       135 s~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~--------  204 (328)
T 4fcg_A          135 ARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN--------  204 (328)
T ss_dssp             ESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG--------
T ss_pred             CCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcC--------
Confidence            888888 66778888888999999888877777766654         999999999999987 45544433        


Q ss_pred             CCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCC
Q 003888          546 NSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHN  625 (788)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N  625 (788)
                                                                  +++|+.|++++|.+++ +|..++.+++|++|++++|
T Consensus       205 --------------------------------------------l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n  239 (328)
T 4fcg_A          205 --------------------------------------------LQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGC  239 (328)
T ss_dssp             --------------------------------------------CTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTC
T ss_pred             --------------------------------------------CCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCC
Confidence                                                        4589999999999995 6668999999999999999


Q ss_pred             cCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCCcccccCCCCccccCCCC
Q 003888          626 NLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNT  698 (788)
Q Consensus       626 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~gn~  698 (788)
                      ++.+.+|..++++++|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|.++..++++..+.+..+.
T Consensus       240 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL  312 (328)
T ss_dssp             TTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred             cchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999988887776654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=4.5e-27  Score=245.03  Aligned_cols=261  Identities=19%  Similarity=0.193  Sum_probs=195.8

Q ss_pred             CCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccC
Q 003888          349 LRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISD  428 (788)
Q Consensus       349 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  428 (788)
                      ++..+++.+.+.......+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+  +..+++|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence            4555666666654444555667788899999988887777788888889999999888876544  78888888888888


Q ss_pred             CcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccC
Q 003888          429 NNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVP  508 (788)
Q Consensus       429 n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  508 (788)
                      |.+++                             +...++|++|++++|++++..+.   .+++|++|++++|++++..+
T Consensus        90 n~l~~-----------------------------l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~  137 (317)
T 3o53_A           90 NYVQE-----------------------------LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRD  137 (317)
T ss_dssp             SEEEE-----------------------------EEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGG
T ss_pred             Ccccc-----------------------------ccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccc
Confidence            87652                             12237888888888888765443   35778899999998887777


Q ss_pred             cccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeeccc
Q 003888          509 VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGK  588 (788)
Q Consensus       509 ~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (788)
                      ..+..+++|+.|++++|++.+..+..+..                                                   
T Consensus       138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---------------------------------------------------  166 (317)
T 3o53_A          138 LDEGCRSRVQYLDLKLNEIDTVNFAELAA---------------------------------------------------  166 (317)
T ss_dssp             BCTGGGSSEEEEECTTSCCCEEEGGGGGG---------------------------------------------------
T ss_pred             hhhhccCCCCEEECCCCCCCcccHHHHhh---------------------------------------------------
Confidence            78888888999999988887543332210                                                   


Q ss_pred             ccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEE
Q 003888          589 VLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVF  668 (788)
Q Consensus       589 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  668 (788)
                      .+++|+.|++++|.+++. + ....+++|++|+|++|+++++.+ .+..+++|++|++++|+++ .+|..+..+++|+.|
T Consensus       167 ~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L  242 (317)
T 3o53_A          167 SSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHF  242 (317)
T ss_dssp             GTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEE
T ss_pred             ccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcCCCCCEE
Confidence            145788899999888855 3 23358888999999998887654 4888888999999999888 567778888889999


Q ss_pred             EccCCcCc-ccCCCcccccCCCCccccCCCC
Q 003888          669 SVAYNNLS-GEIPEWTAQFATFNESSYEGNT  698 (788)
Q Consensus       669 ~l~~N~l~-~~~p~~~~~~~~~~~~~~~gn~  698 (788)
                      ++++|+++ +.+|.++..+..+..+.+.+++
T Consensus       243 ~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~  273 (317)
T 3o53_A          243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK  273 (317)
T ss_dssp             ECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             EccCCCccCcCHHHHHhccccceEEECCCch
Confidence            99999888 5666766777666666666443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=2.2e-26  Score=253.77  Aligned_cols=62  Identities=18%  Similarity=0.080  Sum_probs=36.5

Q ss_pred             CCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccC-CCCCCCEEEccCCcCC
Q 003888          467 SSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLC-ELNQLQLLDLSNNNLH  528 (788)
Q Consensus       467 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~i~  528 (788)
                      ++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.++
T Consensus       120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            5566666666666655555555566666666666666655555543 4555666666655554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=1.1e-23  Score=236.46  Aligned_cols=68  Identities=26%  Similarity=0.356  Sum_probs=46.9

Q ss_pred             ccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCC
Q 003888          591 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK  663 (788)
Q Consensus       591 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  663 (788)
                      ++|+.|++++|.++ .+|.   .+++|+.|+|++|+|+ .+|..+.++++|+.|+|++|++++..|..+..++
T Consensus       241 ~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          241 SELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             CcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            36677777777776 3443   4567777777777777 3466677777788888888877777776655543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=1.7e-27  Score=272.15  Aligned_cols=405  Identities=17%  Similarity=0.136  Sum_probs=208.7

Q ss_pred             ccCCCCCCEEEcCCCcCCCCC--------------chhHhhcCCCCCEEEcCCCcccccCccCcC-CCCCccEEEcccC-
Q 003888          196 LYHQHDLEDVRLSHVNMDGEF--------------PNWLLENNTKLRQLYLVNDSLTGPFRLPIH-SHRWLRFLDVSNN-  259 (788)
Q Consensus       196 l~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~L~~n-  259 (788)
                      +..+++|++++++++.....+              ...+...+++|++|++++|.+++..+..+. .+++|++|++++| 
T Consensus        62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  141 (594)
T 2p1m_B           62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE  141 (594)
T ss_dssp             HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred             HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence            345566777777665422111              012334667777777777777665444443 4677777777777 


Q ss_pred             cCcccCChhhhhcCCCCcEEEcccCcCCCCCcccc----cCCCCCCEEEcccCc--CCCccchHHHhcCCCCCEEEccCc
Q 003888          260 NFQGHIPVEIGDILPSLISFNISMNALDSSIPSSF----GNMNFLQILDLSNNQ--LTGEIPEHLAVSCVNLEFLALSNN  333 (788)
Q Consensus       260 ~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~----~~l~~L~~L~l~~n~--i~~~i~~~~~~~l~~L~~L~L~~n  333 (788)
                      .+++.....+...+++|++|++++|.+++..+..+    ..+++|++|++++|.  +.......+...+++|++|++++|
T Consensus       142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            44432233344446778888888777665443333    356678888887775  221112222334677888877776


Q ss_pred             -cCCCcCcccCcCCCCCCEEeccCCc-------CCCcCCccccCCCCCCEE-EccCCcCCCCCcccccCCCCCCEEeCCC
Q 003888          334 -NLKGHMFSRNFNLTNLRSLQLEGNH-------LEGEIPQSLSKCSSLEGL-YLNNNSLSGKIPRWLGNLTGLKHIIMPE  404 (788)
Q Consensus       334 -~i~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~l~~l~~L~~L-~L~~n~i~~~~~~~~~~l~~L~~L~l~~  404 (788)
                       .+.+ .+..+..+++|++|+++.+.       +. .++..+.++++|+.+ .+.+... ...+..+..+++|++|++++
T Consensus       222 ~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~  298 (594)
T 2p1m_B          222 VPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSY  298 (594)
T ss_dssp             SCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTT
T ss_pred             CcHHH-HHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccC
Confidence             3332 34445566777777755443       22 123356667777777 2332211 12333334567777777777


Q ss_pred             CcccCCccc-cccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccC-------
Q 003888          405 NHLEGPIPV-GFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSY-------  476 (788)
Q Consensus       405 n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~-------  476 (788)
                      |.+.+.... .+..+++|++|++++| +.+                       .........+++|++|++++       
T Consensus       299 ~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~-----------------------~~l~~l~~~~~~L~~L~L~~~~~~g~~  354 (594)
T 2p1m_B          299 ATVQSYDLVKLLCQCPKLQRLWVLDY-IED-----------------------AGLEVLASTCKDLRELRVFPSEPFVME  354 (594)
T ss_dssp             CCCCHHHHHHHHTTCTTCCEEEEEGG-GHH-----------------------HHHHHHHHHCTTCCEEEEECSCTTCSS
T ss_pred             CCCCHHHHHHHHhcCCCcCEEeCcCc-cCH-----------------------HHHHHHHHhCCCCCEEEEecCcccccc
Confidence            765432222 2446677777777665 221                       00011122355566665522       


Q ss_pred             --CcCCCCCCccc-cCCCCCCEEEccCCcCccccCcccC-CCCCCCEEEcc--C----CcCCCCCCC-CCcCcccccccC
Q 003888          477 --NRLNGSIPNWV-DGLSQLSHLILGHNNLEGEVPVQLC-ELNQLQLLDLS--N----NNLHGPIPP-CFDNTTLHESSN  545 (788)
Q Consensus       477 --n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls--~----n~i~~~~~~-~~~~~~~~~~~~  545 (788)
                        +.+++.....+ .++++|++|.+..|.+++.....+. .+++|+.|+++  +    +.++..... .+.         
T Consensus       355 ~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~---------  425 (594)
T 2p1m_B          355 PNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFG---------  425 (594)
T ss_dssp             CSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHH---------
T ss_pred             cCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHH---------
Confidence              22322111112 2356666666666666544333333 35666666666  2    222110000 000         


Q ss_pred             CCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccC-cccCCeEeCCC
Q 003888          546 NSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGN-LTRIQTLNLSH  624 (788)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~  624 (788)
                                                           ..  ...+++|+.|++++ .+++..+..+.. +++|+.|+|++
T Consensus       426 -------------------------------------~l--~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~  465 (594)
T 2p1m_B          426 -------------------------------------AI--VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAF  465 (594)
T ss_dssp             -------------------------------------HH--HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEES
T ss_pred             -------------------------------------HH--HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccC
Confidence                                                 00  01134566666655 444444444443 56666666666


Q ss_pred             CcCCccCCccc-cCCCCCCEEECcCCcccccCCc-cccCCCCCCEEEccCCcCc
Q 003888          625 NNLTGLIPSTF-SNLKHIESLDLSYNKLNGKIPH-QLVELKTLAVFSVAYNNLS  676 (788)
Q Consensus       625 N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~l~~N~l~  676 (788)
                      |.+++..+..+ ..+++|++|++++|++++..+. ....+++|+.|++++|+++
T Consensus       466 ~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          466 AGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             CCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             CCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            66654433333 4456666666666666433322 2234566666666666653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=1.1e-23  Score=213.98  Aligned_cols=206  Identities=23%  Similarity=0.283  Sum_probs=120.3

Q ss_pred             CccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEcc
Q 003888          420 SLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILG  499 (788)
Q Consensus       420 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  499 (788)
                      ..+.++++++.++......  ..+++.|++++|.+. .++...|..+++|++|++++|.++...+..|..+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNI--PADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCccCCCC--CCCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            4678888888877543222  245666666666653 3333336666666666666666665444455556666666666


Q ss_pred             CCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeec
Q 003888          500 HNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTK  579 (788)
Q Consensus       500 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  579 (788)
                      +|++++..+..|..+++|++|++++|++.+..+..|..                                          
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------------------  131 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS------------------------------------------  131 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT------------------------------------------
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc------------------------------------------
Confidence            66666555555566666666666666665544444433                                          


Q ss_pred             cceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccc
Q 003888          580 NIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL  659 (788)
Q Consensus       580 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l  659 (788)
                                +++|+.|++++|.+++..+..|..+++|++|++++|+++++.+..|..+++|++|++++|++++..+..+
T Consensus       132 ----------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  201 (270)
T 2o6q_A          132 ----------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF  201 (270)
T ss_dssp             ----------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             ----------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHh
Confidence                      2356666666666665544455666666666666666665555556666666666666666655444455


Q ss_pred             cCCCCCCEEEccCCcCcccCC
Q 003888          660 VELKTLAVFSVAYNNLSGEIP  680 (788)
Q Consensus       660 ~~l~~L~~L~l~~N~l~~~~p  680 (788)
                      ..+++|+.|++++|++.+..+
T Consensus       202 ~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          202 DSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TTCTTCCEEECCSSCBCCSSS
T ss_pred             ccccCCCEEEecCCCeeCCCc
Confidence            556666666666666655443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=8.1e-26  Score=234.94  Aligned_cols=132  Identities=24%  Similarity=0.294  Sum_probs=71.6

Q ss_pred             ccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCc-CcccCc-------CCCCCCEEeccCCcCCCcCCc
Q 003888          294 FGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGH-MFSRNF-------NLTNLRSLQLEGNHLEGEIPQ  365 (788)
Q Consensus       294 ~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~-------~l~~L~~L~l~~n~l~~~~~~  365 (788)
                      ++..++|++|++++|.+  .+|..+...   |+.|++++|.++.. .+..+.       ++++|++|++++|.+++..|.
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            34445566666666666  555555432   55556666655321 122221       456666666666666655555


Q ss_pred             cc--cCCCCCCEEEccCCcCCCCCcccccCC-----CCCCEEeCCCCcccCCccccccCCCCccEEEccCCcC
Q 003888          366 SL--SKCSSLEGLYLNNNSLSGKIPRWLGNL-----TGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNI  431 (788)
Q Consensus       366 ~l--~~l~~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  431 (788)
                      .+  ..+++|++|++++|.+++. |..+..+     ++|++|++++|.+.+..+..+..+++|++|++++|++
T Consensus       114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  185 (312)
T 1wwl_A          114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE  185 (312)
T ss_dssp             CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTT
T ss_pred             HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCc
Confidence            54  5666666666666666644 4444443     4555555555555544444555555555555555543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=1.4e-25  Score=247.39  Aligned_cols=244  Identities=21%  Similarity=0.223  Sum_probs=150.6

Q ss_pred             CCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccC
Q 003888          372 SLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSK  451 (788)
Q Consensus       372 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~  451 (788)
                      +|+.|++++|.+++..|..|..+++|++|++++|.+.+..+  +..+++|++|++++|.+++                  
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~------------------   94 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE------------------   94 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE------------------
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC------------------
Confidence            45555555555554444555555555555555555554333  5555666666666665442                  


Q ss_pred             cccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCC
Q 003888          452 NMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPI  531 (788)
Q Consensus       452 n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~  531 (788)
                                 +...++|+.|++++|.+++..+.   .+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..
T Consensus        95 -----------l~~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  160 (487)
T 3oja_A           95 -----------LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN  160 (487)
T ss_dssp             -----------EEECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE
T ss_pred             -----------CCCCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC
Confidence                       11125666666666666654332   3466777777777777666667777777777777777776544


Q ss_pred             CCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccc
Q 003888          532 PPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI  611 (788)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l  611 (788)
                      |..+..                                                   .+++|+.|+|++|.+++..  .+
T Consensus       161 ~~~l~~---------------------------------------------------~l~~L~~L~Ls~N~l~~~~--~~  187 (487)
T 3oja_A          161 FAELAA---------------------------------------------------SSDTLEHLNLQYNFIYDVK--GQ  187 (487)
T ss_dssp             GGGGGG---------------------------------------------------GTTTCCEEECTTSCCCEEE--CC
T ss_pred             hHHHhh---------------------------------------------------hCCcccEEecCCCcccccc--cc
Confidence            433321                                                   1346777777777777552  23


Q ss_pred             cCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCc-ccCCCcccccCCCC
Q 003888          612 GNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLS-GEIPEWTAQFATFN  690 (788)
Q Consensus       612 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~-~~~p~~~~~~~~~~  690 (788)
                      ..+++|+.|+|++|++++++|. +..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|.++..+..+.
T Consensus       188 ~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~  265 (487)
T 3oja_A          188 VVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ  265 (487)
T ss_dssp             CCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHH
T ss_pred             ccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCc
Confidence            3477777777777777765443 6677777777777777774 5666777777777777777777 44555555555544


Q ss_pred             ccccC-------CCCCCCCCC
Q 003888          691 ESSYE-------GNTFLCGLP  704 (788)
Q Consensus       691 ~~~~~-------gn~~~c~~~  704 (788)
                      .+...       ++++.|.|+
T Consensus       266 ~l~~~~~~~~~~~~~~~c~~~  286 (487)
T 3oja_A          266 TVAKQTVKKLTGQNEEECTVP  286 (487)
T ss_dssp             HHHHHHHHHHTSSSSCCCSST
T ss_pred             EEeccccccccCCCcccccCC
Confidence            44443       778888775

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=5.1e-26  Score=236.49  Aligned_cols=204  Identities=25%  Similarity=0.267  Sum_probs=106.1

Q ss_pred             CCCCCEEEcccCcCCCccchHHH-hcCCCCCEEEccCccCCCcCcccCcCC-----CCCCEEeccCCcCCCcCCccccCC
Q 003888          297 MNFLQILDLSNNQLTGEIPEHLA-VSCVNLEFLALSNNNLKGHMFSRNFNL-----TNLRSLQLEGNHLEGEIPQSLSKC  370 (788)
Q Consensus       297 l~~L~~L~l~~n~i~~~i~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~l~~l  370 (788)
                      +++|++|++++|.+++.+|..++ ..+++|++|++++|++++. +..+..+     ++|++|++++|++++..+..+..+
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            44444444444444433333321 2344444444444444433 2222222     455555555555554444555555


Q ss_pred             CCCCEEEccCCcCCCC--Ccccc--cCCCCCCEEeCCCCcccCC---ccccccCCCCccEEEccCCcCCCCCCCCCCCCC
Q 003888          371 SSLEGLYLNNNSLSGK--IPRWL--GNLTGLKHIIMPENHLEGP---IPVGFCQLYSLQILDISDNNISGSLPSCFHPLS  443 (788)
Q Consensus       371 ~~L~~L~L~~n~i~~~--~~~~~--~~l~~L~~L~l~~n~~~~~---~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~  443 (788)
                      ++|++|++++|++.+.  .+..+  ..+++|++|++++|.+.+.   ....+..+++|++|++++|.+++..        
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--------  244 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA--------  244 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC--------
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc--------
Confidence            5555555555554332  11222  4556666666666665521   1122345566666666666665432        


Q ss_pred             ccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEcc
Q 003888          444 IEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLS  523 (788)
Q Consensus       444 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  523 (788)
                                     +...+..+++|++|++++|+++ .+|..+.  ++|++|++++|++++. |. +..+++|++|+++
T Consensus       245 ---------------~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~  304 (312)
T 1wwl_A          245 ---------------GAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLK  304 (312)
T ss_dssp             ---------------CCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECT
T ss_pred             ---------------chhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEecc
Confidence                           1122344566777777777766 4455444  6677777777777654 44 6667777777777


Q ss_pred             CCcCCC
Q 003888          524 NNNLHG  529 (788)
Q Consensus       524 ~n~i~~  529 (788)
                      +|++++
T Consensus       305 ~N~l~~  310 (312)
T 1wwl_A          305 GNPFLD  310 (312)
T ss_dssp             TCTTTC
T ss_pred             CCCCCC
Confidence            777653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=9.1e-24  Score=215.66  Aligned_cols=189  Identities=25%  Similarity=0.299  Sum_probs=111.1

Q ss_pred             ccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCccccc
Q 003888          463 FFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE  542 (788)
Q Consensus       463 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  542 (788)
                      |..+++|++|++++|++++..+..+..+++|++|++++|++++..+..|.++++|++|++++|++.+..+..+..     
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----  122 (276)
T 2z62_A           48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH-----  122 (276)
T ss_dssp             TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTT-----
T ss_pred             hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhccc-----
Confidence            555566666666666665555555666666666666666666555555666666666666666665444333322     


Q ss_pred             ccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCccccc-CcccccCcccCCeEe
Q 003888          543 SSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGH-IPPQIGNLTRIQTLN  621 (788)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~  621 (788)
                                                                     +++|+.|++++|.+++. +|..+..+++|++|+
T Consensus       123 -----------------------------------------------l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~  155 (276)
T 2z62_A          123 -----------------------------------------------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD  155 (276)
T ss_dssp             -----------------------------------------------CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred             -----------------------------------------------CCCCCEEECcCCccceecCchhhccCCCCCEEE
Confidence                                                           23566666666666543 355666666666666


Q ss_pred             CCCCcCCccCCccccCCCCCC----EEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCCcccccCCCCccccCCC
Q 003888          622 LSHNNLTGLIPSTFSNLKHIE----SLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGN  697 (788)
Q Consensus       622 Ls~N~l~~~~~~~~~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~gn  697 (788)
                      +++|++++..+..+..+++|+    +|++++|++++..+..+. ..+|+.|++++|++++..+..+..+.++..+++.+|
T Consensus       156 Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             CCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred             CCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence            666666665555555555555    666666666644443333 235666666666666555554555666666666666


Q ss_pred             CCCCCCC
Q 003888          698 TFLCGLP  704 (788)
Q Consensus       698 ~~~c~~~  704 (788)
                      |+.|+|+
T Consensus       235 ~~~c~c~  241 (276)
T 2z62_A          235 PWDCSCP  241 (276)
T ss_dssp             CBCCCTT
T ss_pred             cccccCC
Confidence            6666664

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.6e-23  Score=213.79  Aligned_cols=209  Identities=26%  Similarity=0.321  Sum_probs=140.4

Q ss_pred             CCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEcc
Q 003888          396 GLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLS  475 (788)
Q Consensus       396 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~  475 (788)
                      ++++|++++|.+++..+..|.++++|++|++++|.+.+                        ++...|..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------------~~~~~~~~l~~L~~L~L~   84 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT------------------------IEDGAYQSLSHLSTLILT   84 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE------------------------ECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc------------------------cCHHHccCCcCCCEEECC
Confidence            45555555555554444445555555555555555432                        122225555666666666


Q ss_pred             CCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCC-CCCCCcCcccccccCCCCCCCCcc
Q 003888          476 YNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGP-IPPCFDNTTLHESSNNSYSLKPFE  554 (788)
Q Consensus       476 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~  554 (788)
                      +|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|++.+. +|..+..                 
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~-----------------  147 (276)
T 2z62_A           85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-----------------  147 (276)
T ss_dssp             TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-----------------
T ss_pred             CCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc-----------------
Confidence            6666655556666667777777777776655555666777777777777776543 2433333                 


Q ss_pred             cccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCC----eEeCCCCcCCcc
Q 003888          555 TSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQ----TLNLSHNNLTGL  630 (788)
Q Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~----~L~Ls~N~l~~~  630 (788)
                                                         +++|+.|++++|++++..+..+..+++|+    +|++++|+++++
T Consensus       148 -----------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~  192 (276)
T 2z62_A          148 -----------------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI  192 (276)
T ss_dssp             -----------------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEE
T ss_pred             -----------------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccccc
Confidence                                               34677777777777777777777777777    889999999887


Q ss_pred             CCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCC
Q 003888          631 IPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPE  681 (788)
Q Consensus       631 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~  681 (788)
                      .+..+.. .+|++|++++|++++..+..+..+++|+.|++++|+++|..|.
T Consensus       193 ~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          193 QPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             CTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred             CccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence            7666654 4799999999999877667778899999999999999987763

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=1.4e-26  Score=264.61  Aligned_cols=426  Identities=13%  Similarity=0.075  Sum_probs=279.8

Q ss_pred             CCCCCCCccEEEcccCCcccccch--------------hHHHhhcCCCCcEEeCCCCCCCCCCCCCCccccc-CCCCCCE
Q 003888           14 GFPHFKSLDHLDMVFARTALNTSF--------------LQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLC-SLMHLQE   78 (788)
Q Consensus        14 ~l~~~~~L~~L~L~~~~~~~~~~~--------------~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~-~l~~L~~   78 (788)
                      .+..+++|+.|++  +++.....+              ...+...+++|++|++++|.+.   ...+. .+. .+++|++
T Consensus        61 ~~~~~~~L~~L~L--~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~---~~~~~-~l~~~~~~L~~  134 (594)
T 2p1m_B           61 VIRRFPKVRSVEL--KGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVT---DDCLE-LIAKSFKNFKV  134 (594)
T ss_dssp             HHHHCTTCCEEEE--ECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC---HHHHH-HHHHHCTTCCE
T ss_pred             HHhhCCCceEEec--cCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEc---HHHHH-HHHHhCCCCcE
Confidence            3567899999999  776532211              1223338899999999999875   33333 454 6899999


Q ss_pred             EEcCCC-CCCcC-CChhhcCCCCCCEEECCCCcCcCcCCh---hhhcCCCCCCEEECcCcc--ccccCCccccccCCCCc
Q 003888           79 LYIDNN-DLRGS-LPWCLANMTSLRILDVSSNQLTGSISS---SPLVHLTSIEELMLSNNH--FQIPISLEPLFNHSRLK  151 (788)
Q Consensus        79 L~Ls~n-~l~~~-~~~~l~~l~~L~~L~Ls~n~~~~~i~~---~~l~~l~~L~~L~Ls~n~--l~~~~~~~~l~~l~~L~  151 (788)
                      |+|++| .+++. ++..+.++++|++|++++|.+++..+.   .....+++|++|++++|.  +..........++++|+
T Consensus       135 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~  214 (594)
T 2p1m_B          135 LVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLK  214 (594)
T ss_dssp             EEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCC
T ss_pred             EeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCc
Confidence            999999 45533 455556899999999999997743222   123467899999999986  22111111235579999


Q ss_pred             EEEccCccccccccccccCCCCcccccEEEccCCCCCC------CCcCccccCCCCCCEE-EcCCCcCCCCCchhHhhcC
Q 003888          152 IFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDG------VTFPKFLYHQHDLEDV-RLSHVNMDGEFPNWLLENN  224 (788)
Q Consensus       152 ~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~l~~~~~L~~L-~l~~~~~~~~~~~~~~~~l  224 (788)
                      +|++++|......+..   .....+|+.|++ ..+...      ..++..+..+++|+.+ .+..... +.++.. ...+
T Consensus       215 ~L~L~~~~~~~~l~~~---~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~-~~~~  288 (594)
T 2p1m_B          215 SLKLNRAVPLEKLATL---LQRAPQLEELGT-GGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAV-YSVC  288 (594)
T ss_dssp             EEECCTTSCHHHHHHH---HHHCTTCSEEEC-SBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGG-HHHH
T ss_pred             EEecCCCCcHHHHHHH---HhcCCcceEccc-ccccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHH-HHhh
Confidence            9999988322221111   122347888887 333210      1133466788999988 3443322 233333 3568


Q ss_pred             CCCCEEEcCCCcccccCc-cCcCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEccc---------CcCCCCCcccc
Q 003888          225 TKLRQLYLVNDSLTGPFR-LPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISM---------NALDSSIPSSF  294 (788)
Q Consensus       225 ~~L~~L~L~~~~l~~~~~-~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~---------n~~~~~~~~~~  294 (788)
                      ++|++|++++|.+++... ..+..+++|++|++++| +.+.....+...+++|++|++.+         +.+++.....+
T Consensus       289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l  367 (594)
T 2p1m_B          289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV  367 (594)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred             CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence            899999999998765332 23567899999999988 54333344445588999999944         34443322233


Q ss_pred             c-CCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEcc--C----ccCCCcCcc-----cCcCCCCCCEEeccCCcCCCc
Q 003888          295 G-NMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALS--N----NNLKGHMFS-----RNFNLTNLRSLQLEGNHLEGE  362 (788)
Q Consensus       295 ~-~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~--~----n~i~~~~~~-----~~~~l~~L~~L~l~~n~l~~~  362 (788)
                      . ++++|++|.+..+.+++.....+...+++|++|+++  +    +.++....+     .+..+++|+.|++++ .+++.
T Consensus       368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~  446 (594)
T 2p1m_B          368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK  446 (594)
T ss_dssp             HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred             HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence            3 488999999988888866666666568999999999  4    555532211     245678999999977 66655


Q ss_pred             CCccccC-CCCCCEEEccCCcCCCCCcccc-cCCCCCCEEeCCCCcccCCccc-cccCCCCccEEEccCCcCCCCCCCCC
Q 003888          363 IPQSLSK-CSSLEGLYLNNNSLSGKIPRWL-GNLTGLKHIIMPENHLEGPIPV-GFCQLYSLQILDISDNNISGSLPSCF  439 (788)
Q Consensus       363 ~~~~l~~-l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~  439 (788)
                      .+..+.. +++|+.|++++|.+++.....+ ..+++|++|++++|.+++.... ....+++|++|++++|.++......+
T Consensus       447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l  526 (594)
T 2p1m_B          447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLL  526 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHH
T ss_pred             HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHH
Confidence            4445554 8899999999999875555444 5689999999999998644333 33457899999999998743211111


Q ss_pred             --CCCCccEEEccCcc
Q 003888          440 --HPLSIEQVHLSKNM  453 (788)
Q Consensus       440 --~~~~L~~L~l~~n~  453 (788)
                        ..+.++...+..+.
T Consensus       527 ~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          527 GQKMPKLNVEVIDERG  542 (594)
T ss_dssp             HHHCTTEEEEEECSSS
T ss_pred             HHhCCCCEEEEecCCC
Confidence              14556555554443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=2.2e-23  Score=213.36  Aligned_cols=205  Identities=25%  Similarity=0.262  Sum_probs=112.7

Q ss_pred             ccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCC
Q 003888          415 FCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLS  494 (788)
Q Consensus       415 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  494 (788)
                      +.+++++++++++++.++...+...  ..++.|++++|.+.+.. ...|..+++|+.|++++|.+++..+  ...+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred             ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence            3444555555555555543322211  23333333333332222 2235566666666666666654322  24566666


Q ss_pred             EEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccce
Q 003888          495 HLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENF  574 (788)
Q Consensus       495 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  574 (788)
                      +|++++|+++ .+|..+..+++|+.|++++|++++..+..|..                                     
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~-------------------------------------  122 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG-------------------------------------  122 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT-------------------------------------
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC-------------------------------------
Confidence            6666666665 44555566666666666666666554444443                                     


Q ss_pred             eeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCccccc
Q 003888          575 EFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGK  654 (788)
Q Consensus       575 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  654 (788)
                                     +++|+.|+|++|++++..+..|..+++|+.|+|++|+++++.+..|..+++|++|++++|+++ .
T Consensus       123 ---------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~  186 (290)
T 1p9a_G          123 ---------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T  186 (290)
T ss_dssp             ---------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred             ---------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-c
Confidence                           235666666666666555555566666666666666666555555566666666666666665 4


Q ss_pred             CCccccCCCCCCEEEccCCcCccc
Q 003888          655 IPHQLVELKTLAVFSVAYNNLSGE  678 (788)
Q Consensus       655 ~p~~l~~l~~L~~L~l~~N~l~~~  678 (788)
                      +|..+...++|+.+++++|++.|.
T Consensus       187 ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          187 IPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             cChhhcccccCCeEEeCCCCccCc
Confidence            555555555666666666666543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=1.2e-22  Score=206.31  Aligned_cols=207  Identities=23%  Similarity=0.254  Sum_probs=170.9

Q ss_pred             CCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEE
Q 003888          442 LSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLD  521 (788)
Q Consensus       442 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  521 (788)
                      ...+.++++++.+. .+|.. +  .+++++|++++|++++..+..|..+++|++|++++|.++...+..|..+++|++|+
T Consensus        16 ~~~~~l~~~~~~l~-~ip~~-~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           16 NNKNSVDCSSKKLT-AIPSN-I--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTTEEECTTSCCS-SCCSC-C--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred             CCCCEEEccCCCCC-ccCCC-C--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence            35678888888885 45544 2  26788999999998877777888889999999999998877777778889999999


Q ss_pred             ccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCC
Q 003888          522 LSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCN  601 (788)
Q Consensus       522 Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n  601 (788)
                      +++|++.+..+..+..                                                    +++|++|++++|
T Consensus        92 l~~n~l~~~~~~~~~~----------------------------------------------------l~~L~~L~l~~n  119 (270)
T 2o6q_A           92 VTDNKLQALPIGVFDQ----------------------------------------------------LVNLAELRLDRN  119 (270)
T ss_dssp             CCSSCCCCCCTTTTTT----------------------------------------------------CSSCCEEECCSS
T ss_pred             CCCCcCCcCCHhHccc----------------------------------------------------ccCCCEEECCCC
Confidence            9999888666655544                                                    347889999999


Q ss_pred             cccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCC
Q 003888          602 KLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPE  681 (788)
Q Consensus       602 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~  681 (788)
                      .+++..+..|..+++|++|+|++|+++++.+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+.
T Consensus       120 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  199 (270)
T 2o6q_A          120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG  199 (270)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHH
Confidence            99888888888899999999999999888777788899999999999999877777788889999999999999877777


Q ss_pred             cccccCCCCccccCCCCCCCCCC
Q 003888          682 WTAQFATFNESSYEGNTFLCGLP  704 (788)
Q Consensus       682 ~~~~~~~~~~~~~~gn~~~c~~~  704 (788)
                      .+..+.++..+++.+|||.|+|+
T Consensus       200 ~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          200 AFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TTTTCTTCCEEECCSSCBCCSSS
T ss_pred             HhccccCCCEEEecCCCeeCCCc
Confidence            67778888888999999999886

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=9.5e-23  Score=207.23  Aligned_cols=207  Identities=24%  Similarity=0.293  Sum_probs=153.0

Q ss_pred             CCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEE
Q 003888          393 NLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTL  472 (788)
Q Consensus       393 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  472 (788)
                      .+++|+.|++++|.+...  ..+..+++|++|++++|.+++.                        +  .+..+++|++|
T Consensus        39 ~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~------------------------~--~l~~l~~L~~L   90 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI------------------------S--ALKELTNLTYL   90 (272)
T ss_dssp             HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC------------------------G--GGTTCTTCCEE
T ss_pred             cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc------------------------h--hhcCCCCCCEE
Confidence            345555555555554422  2345556666666666655421                        1  15566777777


Q ss_pred             EccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCC
Q 003888          473 DLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKP  552 (788)
Q Consensus       473 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~  552 (788)
                      ++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..+..+..               
T Consensus        91 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---------------  155 (272)
T 3rfs_A           91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK---------------  155 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------------
T ss_pred             ECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc---------------
Confidence            77777777666666777788888888888887766667778888888888888877665555544               


Q ss_pred             cccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCC
Q 003888          553 FETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIP  632 (788)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~  632 (788)
                                                           +++|+.|++++|++++..+..++.+++|++|++++|++++..+
T Consensus       156 -------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          156 -------------------------------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             -------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             -------------------------------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence                                                 3478888888888887777778899999999999999999888


Q ss_pred             ccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCCccccc
Q 003888          633 STFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQF  686 (788)
Q Consensus       633 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~  686 (788)
                      ..+..+++|++|++++|++.+.       +++|+.++++.|.++|.+|.+++.+
T Consensus       199 ~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          199 GVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             HHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence            8899999999999999998754       4578889999999999999876543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=6.6e-22  Score=202.45  Aligned_cols=205  Identities=25%  Similarity=0.194  Sum_probs=149.8

Q ss_pred             ccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccE
Q 003888          367 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQ  446 (788)
Q Consensus       367 l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~  446 (788)
                      +.+++++++++++++.++ .+|..+.  +.++.|++++|.+.+..+..|..+++|++|++++|.+++.            
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------------   70 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL------------   70 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE------------
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc------------
Confidence            556677888888887776 3444333  5777888888887776677777778888888877776532            


Q ss_pred             EEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCc
Q 003888          447 VHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNN  526 (788)
Q Consensus       447 L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  526 (788)
                                  +.  ...+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.++++|+.|++++|+
T Consensus        71 ------------~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~  135 (290)
T 1p9a_G           71 ------------QV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE  135 (290)
T ss_dssp             ------------EC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred             ------------cC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC
Confidence                        11  245677888888888887 566677778888888888888887777778888888888888888


Q ss_pred             CCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCccccc
Q 003888          527 LHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGH  606 (788)
Q Consensus       527 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  606 (788)
                      +.+..+..|..                                                    +++|+.|+|++|++++.
T Consensus       136 l~~~~~~~~~~----------------------------------------------------l~~L~~L~L~~N~l~~l  163 (290)
T 1p9a_G          136 LKTLPPGLLTP----------------------------------------------------TPKLEKLSLANNNLTEL  163 (290)
T ss_dssp             CCCCCTTTTTT----------------------------------------------------CTTCCEEECTTSCCSCC
T ss_pred             CCccChhhccc----------------------------------------------------ccCCCEEECCCCcCCcc
Confidence            87666555544                                                    34788888888888866


Q ss_pred             CcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCccccc
Q 003888          607 IPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGK  654 (788)
Q Consensus       607 ~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  654 (788)
                      .+..|..+++|+.|+|++|+++. +|..+...++|+.|++++|++.+.
T Consensus       164 ~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          164 PAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             CHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCccCc
Confidence            66667778888888888888884 455566677888888888887653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=1.2e-21  Score=196.70  Aligned_cols=162  Identities=26%  Similarity=0.292  Sum_probs=141.4

Q ss_pred             CCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCC
Q 003888          467 SSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNN  546 (788)
Q Consensus       467 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~  546 (788)
                      ++++.|++++|.+++..+..+.++++|++|++++|.+++..+..|..+++|++|++++|++.+..+..|..         
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---------  105 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDH---------  105 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT---------
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcc---------
Confidence            57888999999988888888888999999999999998888888888999999999999988766666554         


Q ss_pred             CCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCc
Q 003888          547 SYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN  626 (788)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~  626 (788)
                                                                 +++|+.|+|++|++++..+..|..+++|++|+|++|+
T Consensus       106 -------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  142 (251)
T 3m19_A          106 -------------------------------------------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ  142 (251)
T ss_dssp             -------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             -------------------------------------------cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc
Confidence                                                       4489999999999997777778999999999999999


Q ss_pred             CCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCC
Q 003888          627 LTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIP  680 (788)
Q Consensus       627 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p  680 (788)
                      ++++.+..|+.+++|++|++++|++++..+..+..+++|+.|++++|++.+...
T Consensus       143 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  196 (251)
T 3m19_A          143 LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC  196 (251)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred             CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcc
Confidence            998888889999999999999999998878889999999999999999998633

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=9.8e-22  Score=199.73  Aligned_cols=204  Identities=23%  Similarity=0.243  Sum_probs=149.9

Q ss_pred             CccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEcc
Q 003888          420 SLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILG  499 (788)
Q Consensus       420 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  499 (788)
                      .+..+++..+.+.+. .....+.+++.|++.+|.+.. ++  .+..+++|++|++++|.+++.  ..+..+++|++|+++
T Consensus        20 ~l~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~-~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~   93 (272)
T 3rfs_A           20 ETIKANLKKKSVTDA-VTQNELNSIDQIIANNSDIKS-VQ--GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT   93 (272)
T ss_dssp             HHHHHHHTCSCTTSE-ECHHHHTTCCEEECTTSCCCC-CT--TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred             HHHHHHhcCcccccc-cccccccceeeeeeCCCCccc-cc--ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence            344455555554432 112235678888888887642 22  267778888888888888753  367778888888888


Q ss_pred             CCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeec
Q 003888          500 HNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTK  579 (788)
Q Consensus       500 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  579 (788)
                      +|.+++..+..+..+++|++|++++|++.+..+..+..                                          
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------------------------------------------  131 (272)
T 3rfs_A           94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK------------------------------------------  131 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT------------------------------------------
T ss_pred             CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhcc------------------------------------------
Confidence            88888777777788888888888888887666655544                                          


Q ss_pred             cceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccc
Q 003888          580 NIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL  659 (788)
Q Consensus       580 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l  659 (788)
                                +++|+.|++++|.+++..+..++.+++|++|++++|++++..+..|+.+++|++|++++|++++..|..+
T Consensus       132 ----------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  201 (272)
T 3rfs_A          132 ----------LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF  201 (272)
T ss_dssp             ----------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             ----------CCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHH
Confidence                      3478888888888887777777888888888888888887777777888888888888888887777777


Q ss_pred             cCCCCCCEEEccCCcCcccCCC
Q 003888          660 VELKTLAVFSVAYNNLSGEIPE  681 (788)
Q Consensus       660 ~~l~~L~~L~l~~N~l~~~~p~  681 (788)
                      ..+++|+.|++++|++.|.+|.
T Consensus       202 ~~l~~L~~L~l~~N~~~~~~~~  223 (272)
T 3rfs_A          202 DRLTSLQYIWLHDNPWDCTCPG  223 (272)
T ss_dssp             TTCTTCCEEECCSSCBCCCTTT
T ss_pred             hCCcCCCEEEccCCCccccCcH
Confidence            8888888888888888876663

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=3.3e-21  Score=193.38  Aligned_cols=183  Identities=23%  Similarity=0.298  Sum_probs=165.7

Q ss_pred             CCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCC
Q 003888          467 SSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNN  546 (788)
Q Consensus       467 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~  546 (788)
                      ...++++++++.++ .+|..+.  ++++.|++++|.+++..+..|.++++|++|++++|.+.+..+..+..         
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---------   81 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD---------   81 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT---------
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc---------
Confidence            45788999999998 4565554  68999999999999888889999999999999999999877776665         


Q ss_pred             CCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCc
Q 003888          547 SYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN  626 (788)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~  626 (788)
                                                                 +++|+.|++++|++++..+..|..+++|++|+|++|+
T Consensus        82 -------------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  118 (251)
T 3m19_A           82 -------------------------------------------LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ  118 (251)
T ss_dssp             -------------------------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             -------------------------------------------CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCc
Confidence                                                       4589999999999998888889999999999999999


Q ss_pred             CCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCCcccccCCCCccccCCCCCCCC-CC
Q 003888          627 LTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCG-LP  704 (788)
Q Consensus       627 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~gn~~~c~-~~  704 (788)
                      ++++.+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+.++..+++.+|++.|+ |.
T Consensus       119 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~  197 (251)
T 3m19_A          119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCE  197 (251)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred             CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccc
Confidence            9998888899999999999999999987777899999999999999999988888888899999999999999998 54

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=8.9e-23  Score=216.80  Aligned_cols=87  Identities=20%  Similarity=0.239  Sum_probs=40.2

Q ss_pred             cccEEECCCCccccc----CcccccC-cccCCeEeCCCCcCCccCC----ccccCCCCCCEEECcCCcccccC-------
Q 003888          592 LLSGLDLSCNKLIGH----IPPQIGN-LTRIQTLNLSHNNLTGLIP----STFSNLKHIESLDLSYNKLNGKI-------  655 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~----~~~~l~~-l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~-------  655 (788)
                      +|+.|||++|.+++.    ++..+.. .++|++|+|++|++++..+    ..+..+++|++|++++|.+.+..       
T Consensus       197 ~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l  276 (362)
T 3goz_A          197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL  276 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH
T ss_pred             CCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH
Confidence            444555555554432    2223333 2355555555555554322    22344455555555555533221       


Q ss_pred             CccccCCCCCCEEEccCCcCccc
Q 003888          656 PHQLVELKTLAVFSVAYNNLSGE  678 (788)
Q Consensus       656 p~~l~~l~~L~~L~l~~N~l~~~  678 (788)
                      +..+..+++|+.||+++|++...
T Consensus       277 ~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          277 GAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHhccCCceEEEecCCCcCCCc
Confidence            22344455555555655555543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=6.6e-21  Score=189.73  Aligned_cols=78  Identities=19%  Similarity=0.233  Sum_probs=35.0

Q ss_pred             ccc-EEECCCCcccccCcccccCcccCCeEeCCCCc-CCccCCccccCC-CCCCEEECcCCcccccCCccccCCCCCCEE
Q 003888          592 LLS-GLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN-LTGLIPSTFSNL-KHIESLDLSYNKLNGKIPHQLVELKTLAVF  668 (788)
Q Consensus       592 ~L~-~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  668 (788)
                      +|+ .|++++|+++...+..|.. ++|++|++++|+ ++++.+..|.++ ++|++|++++|++++ +|..  .+++|+.|
T Consensus       156 ~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L  231 (239)
T 2xwt_C          156 NETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKEL  231 (239)
T ss_dssp             SSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEE
T ss_pred             cceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCcee
Confidence            344 4444444444222222332 445555555552 554444455555 555555555555542 2222  34445555


Q ss_pred             EccCC
Q 003888          669 SVAYN  673 (788)
Q Consensus       669 ~l~~N  673 (788)
                      +++++
T Consensus       232 ~l~~~  236 (239)
T 2xwt_C          232 IARNT  236 (239)
T ss_dssp             ECTTC
T ss_pred             eccCc
Confidence            55443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=8.8e-21  Score=188.85  Aligned_cols=200  Identities=18%  Similarity=0.197  Sum_probs=160.4

Q ss_pred             CccEEEccCcccccccCcccccCCCCCcEEEccCCc-CCCCCCccccCCCCCCEEEccC-CcCccccCcccCCCCCCCEE
Q 003888          443 SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNR-LNGSIPNWVDGLSQLSHLILGH-NNLEGEVPVQLCELNQLQLL  520 (788)
Q Consensus       443 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L  520 (788)
                      +++.|++++|.+. .++...|..+++|++|++++|+ ++...+..|.++++|++|++++ |++++..+..|.++++|++|
T Consensus        32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            4555555555553 3444458889999999999997 8877777899999999999998 99998878889999999999


Q ss_pred             EccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCC
Q 003888          521 DLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSC  600 (788)
Q Consensus       521 ~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~  600 (788)
                      ++++|++.+ +|. +...+                                                 .+..|+.|++++
T Consensus       111 ~l~~n~l~~-lp~-~~~l~-------------------------------------------------~L~~L~~L~l~~  139 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVY-------------------------------------------------STDIFFILEITD  139 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCC-------------------------------------------------BCCSEEEEEEES
T ss_pred             eCCCCCCcc-ccc-ccccc-------------------------------------------------ccccccEEECCC
Confidence            999999886 343 43321                                                 012244999999


Q ss_pred             C-cccccCcccccCcccCC-eEeCCCCcCCccCCccccCCCCCCEEECcCCc-ccccCCccccCC-CCCCEEEccCCcCc
Q 003888          601 N-KLIGHIPPQIGNLTRIQ-TLNLSHNNLTGLIPSTFSNLKHIESLDLSYNK-LNGKIPHQLVEL-KTLAVFSVAYNNLS  676 (788)
Q Consensus       601 n-~l~~~~~~~l~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~l~~N~l~  676 (788)
                      | .+++..+..|.++++|+ +|++++|+++.+.+..|.. ++|++|++++|+ ++...+..|..+ ++|+.|++++|+++
T Consensus       140 N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          140 NPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             CTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             CcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence            9 99988888899999999 9999999999777777777 899999999995 997778889999 99999999999999


Q ss_pred             ccCCCcccccCCCCccccCCCC
Q 003888          677 GEIPEWTAQFATFNESSYEGNT  698 (788)
Q Consensus       677 ~~~p~~~~~~~~~~~~~~~gn~  698 (788)
                      +..+.   .+..+..+.+.++.
T Consensus       219 ~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          219 ALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             CCCCT---TCTTCSEEECTTC-
T ss_pred             cCChh---HhccCceeeccCcc
Confidence            65443   56666666666543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.84  E-value=1.5e-21  Score=207.29  Aligned_cols=183  Identities=17%  Similarity=0.142  Sum_probs=111.9

Q ss_pred             EEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCc----ccccCCC-CCCEEEcCCCCCCcCCChhhcCC-
Q 003888           24 LDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILD----QGLCSLM-HLQELYIDNNDLRGSLPWCLANM-   97 (788)
Q Consensus        24 L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~l~~l-   97 (788)
                      +++  +++.+++.+++.+. ..++|++|++++|.+    ...+.    +++.+++ +|++|+|++|++++..+..+..+ 
T Consensus         3 ~~l--s~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l----~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l   75 (362)
T 3goz_A            3 YKL--TLHPGSNPVEEFTS-IPHGVTSLDLSLNNL----YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL   75 (362)
T ss_dssp             EEC--CCCTTCCHHHHHHT-SCTTCCEEECTTSCG----GGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred             ccc--ccccchHHHHHHHh-CCCCceEEEccCCCC----ChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHH
Confidence            456  77788877777666 666688888888887    34443    4667777 78888888888887766666664 


Q ss_pred             ----CCCCEEECCCCcCcCcCChhh----hcCC-CCCCEEECcCccccccCCccc----ccc-CCCCcEEEccCcccccc
Q 003888           98 ----TSLRILDVSSNQLTGSISSSP----LVHL-TSIEELMLSNNHFQIPISLEP----LFN-HSRLKIFDAANNEIKAE  163 (788)
Q Consensus        98 ----~~L~~L~Ls~n~~~~~i~~~~----l~~l-~~L~~L~Ls~n~l~~~~~~~~----l~~-l~~L~~L~l~~n~~~~~  163 (788)
                          ++|++|+|++|.+++ .+...    +..+ ++|++|++++|.+++. +...    +.. .++|++|++++|.+.+.
T Consensus        76 ~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  153 (362)
T 3goz_A           76 AAIPANVTSLNLSGNFLSY-KSSDELVKTLAAIPFTITVLDLGWNDFSSK-SSSEFKQAFSNLPASITSLNLRGNDLGIK  153 (362)
T ss_dssp             HTSCTTCCEEECCSSCGGG-SCHHHHHHHHHTSCTTCCEEECCSSCGGGS-CHHHHHHHHTTSCTTCCEEECTTSCGGGS
T ss_pred             hccCCCccEEECcCCcCCh-HHHHHHHHHHHhCCCCccEEECcCCcCCcH-HHHHHHHHHHhCCCceeEEEccCCcCCHH
Confidence                888888888888873 33322    3344 7888888888887633 2222    223 35777777777766532


Q ss_pred             ccccccCCCCcccccEEEccCCCCCCCCcCccccCCC-CCCEEEcCCCcCCCCCchhHh---hcC-CCCCEEEcCCCccc
Q 003888          164 ITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQH-DLEDVRLSHVNMDGEFPNWLL---ENN-TKLRQLYLVNDSLT  238 (788)
Q Consensus       164 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~---~~l-~~L~~L~L~~~~l~  238 (788)
                      ...                        .++..+...+ +|++|++++|.+.+..+..+.   ..+ ++|++|++++|.++
T Consensus       154 ~~~------------------------~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~  209 (362)
T 3goz_A          154 SSD------------------------ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG  209 (362)
T ss_dssp             CHH------------------------HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHH------------------------HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence            111                        1222333333 666666666666655544321   223 35555555555554


Q ss_pred             c
Q 003888          239 G  239 (788)
Q Consensus       239 ~  239 (788)
                      +
T Consensus       210 ~  210 (362)
T 3goz_A          210 L  210 (362)
T ss_dssp             G
T ss_pred             h
Confidence            3

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=5.8e-23  Score=220.63  Aligned_cols=245  Identities=18%  Similarity=0.224  Sum_probs=152.9

Q ss_pred             CccccCCCCCCEEEccCCcCCCCCc----ccccCCCCCCEEeCCCCcc---cCCcccc-------ccCCCCccEEEccCC
Q 003888          364 PQSLSKCSSLEGLYLNNNSLSGKIP----RWLGNLTGLKHIIMPENHL---EGPIPVG-------FCQLYSLQILDISDN  429 (788)
Q Consensus       364 ~~~l~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~l~~n~~---~~~~~~~-------~~~l~~L~~L~l~~n  429 (788)
                      +..+..+++|++|++++|.++...+    ..+..+++|++|++++|.+   .+.+|..       +..+++|++|++++|
T Consensus        25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n  104 (386)
T 2ca6_A           25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  104 (386)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence            3444455555555555555543322    2244555666666655432   2223333       256667777777776


Q ss_pred             cCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCcccc----CC---------CCCCEE
Q 003888          430 NISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVD----GL---------SQLSHL  496 (788)
Q Consensus       430 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~----~l---------~~L~~L  496 (788)
                      .+.....                   ..++.. +..+++|++|++++|.+++..+..+.    .+         ++|++|
T Consensus       105 ~l~~~~~-------------------~~l~~~-l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L  164 (386)
T 2ca6_A          105 AFGPTAQ-------------------EPLIDF-LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI  164 (386)
T ss_dssp             CCCTTTH-------------------HHHHHH-HHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred             cCCHHHH-------------------HHHHHH-HHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEE
Confidence            6653110                   011111 45566777777777766533332222    22         677777


Q ss_pred             EccCCcCc-cccC---cccCCCCCCCEEEccCCcCCC-----CCCCCCcCcccccccCCCCCCCCcccccccccccchhh
Q 003888          497 ILGHNNLE-GEVP---VQLCELNQLQLLDLSNNNLHG-----PIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAE  567 (788)
Q Consensus       497 ~L~~n~l~-~~~~---~~l~~l~~L~~L~Ls~n~i~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  567 (788)
                      ++++|+++ ...+   ..+..+++|+.|++++|++..     ..+..+.                               
T Consensus       165 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~-------------------------------  213 (386)
T 2ca6_A          165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA-------------------------------  213 (386)
T ss_dssp             ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG-------------------------------
T ss_pred             ECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh-------------------------------
Confidence            77777776 2223   345667788888888887641     0111111                               


Q ss_pred             hccccceeeeeccceeeecccccccccEEECCCCccc----ccCcccccCcccCCeEeCCCCcCCcc----CCcccc--C
Q 003888          568 KQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI----GHIPPQIGNLTRIQTLNLSHNNLTGL----IPSTFS--N  637 (788)
Q Consensus       568 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~l~~l~~L~~L~Ls~N~l~~~----~~~~~~--~  637 (788)
                                           .+++|+.|+|++|.++    ..+|..+..+++|+.|+|++|++++.    ++..+.  .
T Consensus       214 ---------------------~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~  272 (386)
T 2ca6_A          214 ---------------------YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE  272 (386)
T ss_dssp             ---------------------GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred             ---------------------cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhcc
Confidence                                 1457888888888885    56777888889999999999998865    455563  3


Q ss_pred             CCCCCEEECcCCcccc----cCCccc-cCCCCCCEEEccCCcCcccCC
Q 003888          638 LKHIESLDLSYNKLNG----KIPHQL-VELKTLAVFSVAYNNLSGEIP  680 (788)
Q Consensus       638 l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~l~~N~l~~~~p  680 (788)
                      +++|++|+|++|.+++    .+|..+ .++++|++|++++|++++..+
T Consensus       273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            8899999999999987    477776 568999999999999987664

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=4.2e-21  Score=199.26  Aligned_cols=57  Identities=30%  Similarity=0.458  Sum_probs=36.5

Q ss_pred             ccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCccc
Q 003888          591 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN  652 (788)
Q Consensus       591 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  652 (788)
                      ++|++|++++|+++ .+|..+.  ++|++|+|++|+++++ |. +..+++|++|++++|+++
T Consensus       251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred             CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence            35666666666666 4455443  5777777777777754 22 566677777777777775

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.84  E-value=9.2e-21  Score=185.43  Aligned_cols=194  Identities=23%  Similarity=0.339  Sum_probs=146.3

Q ss_pred             cEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCC
Q 003888          470 VTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYS  549 (788)
Q Consensus       470 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~  549 (788)
                      +.++++++.++. +|..+.  ++|+.|++++|++++..+..|..+++|+.|++++|++.+..|..|..            
T Consensus        14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------   78 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------   78 (220)
T ss_dssp             TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred             CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence            678999998884 555443  68999999999999887778999999999999999988777776665            


Q ss_pred             CCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCc
Q 003888          550 LKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTG  629 (788)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  629 (788)
                                                              +++|++|+|++|.+++..+..|..+++|++|+|++|++++
T Consensus        79 ----------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~  118 (220)
T 2v9t_B           79 ----------------------------------------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC  118 (220)
T ss_dssp             ----------------------------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             ----------------------------------------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCE
Confidence                                                    3488889999999887766778888899999999999988


Q ss_pred             cCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCC-CcccccCCCCccccCCCCCCCCCCCCCC
Q 003888          630 LIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIP-EWTAQFATFNESSYEGNTFLCGLPLPIC  708 (788)
Q Consensus       630 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p-~~~~~~~~~~~~~~~gn~~~c~~~l~~c  708 (788)
                      +.|..|..+++|++|+|++|++++..+..|..+++|+.|++++|++.|... .|+..+       +..++..-  ....|
T Consensus       119 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~-------l~~~~~~~--~~~~C  189 (220)
T 2v9t_B          119 LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADY-------LHTNPIET--SGARC  189 (220)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHH-------HHHCCCBC--SCCBE
T ss_pred             eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHHHHHH-------HHhCCCCc--cCCCc
Confidence            888888888999999999999887777778888888888888888886433 111111       11111110  11268


Q ss_pred             CCCCCCCcccCCCCCCCCc
Q 003888          709 RSPATMSEASIGNERDDNL  727 (788)
Q Consensus       709 ~~~~~~~~~~~~~~~~~~~  727 (788)
                      ..|....++.+.....+++
T Consensus       190 ~~P~~l~g~~l~~l~~~~~  208 (220)
T 2v9t_B          190 TSPRRLANKRIGQIKSKKF  208 (220)
T ss_dssp             EESGGGTTCBGGGSCGGGC
T ss_pred             CCchHHcCCchhhCCHHHC
Confidence            8888888876665554443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=1.1e-20  Score=195.95  Aligned_cols=228  Identities=19%  Similarity=0.191  Sum_probs=174.2

Q ss_pred             CCCCEEEcCCCcCCCCCchhH--hhcCCCCCEEEcCCCcccccCccCc--CCCCCccEEEcccCcCcccCC----hhhhh
Q 003888          200 HDLEDVRLSHVNMDGEFPNWL--LENNTKLRQLYLVNDSLTGPFRLPI--HSHRWLRFLDVSNNNFQGHIP----VEIGD  271 (788)
Q Consensus       200 ~~L~~L~l~~~~~~~~~~~~~--~~~l~~L~~L~L~~~~l~~~~~~~l--~~~~~L~~L~L~~n~i~~~~~----~~~~~  271 (788)
                      ..++.+.+.++.+.......+  ...+++|++|++++|.+++..+..+  ..+++|++|++++|.+++..+    ..+. 
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-
Confidence            356778888777654221111  1245779999999999998888887  889999999999999986555    2223 


Q ss_pred             cCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCc--cch-HHHhcCCCCCEEEccCccCCCcCcc---cCcC
Q 003888          272 ILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGE--IPE-HLAVSCVNLEFLALSNNNLKGHMFS---RNFN  345 (788)
Q Consensus       272 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~--i~~-~~~~~l~~L~~L~L~~n~i~~~~~~---~~~~  345 (788)
                      .+++|++|++++|.+.+..+..|+++++|++|++++|++.+.  ++. .....+++|++|++++|+++.....   .+..
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            478999999999999988888999999999999999987632  222 2224688899999999998754322   2456


Q ss_pred             CCCCCEEeccCCcCCCcCCccccCC---CCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCcc
Q 003888          346 LTNLRSLQLEGNHLEGEIPQSLSKC---SSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQ  422 (788)
Q Consensus       346 l~~L~~L~l~~n~l~~~~~~~l~~l---~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  422 (788)
                      +++|++|++++|++++..|..+..+   ++|++|++++|.++ .+|..+.  ++|++|++++|++++. |. +..+++|+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~  297 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD  297 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence            7899999999999987777777766   68999999999888 5566553  7888999999988864 32 56778888


Q ss_pred             EEEccCCcCCC
Q 003888          423 ILDISDNNISG  433 (788)
Q Consensus       423 ~L~l~~n~~~~  433 (788)
                      .|++++|++++
T Consensus       298 ~L~L~~N~l~~  308 (310)
T 4glp_A          298 NLTLDGNPFLV  308 (310)
T ss_dssp             CEECSSTTTSC
T ss_pred             EEECcCCCCCC
Confidence            88888888764

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=8.9e-22  Score=211.39  Aligned_cols=254  Identities=17%  Similarity=0.239  Sum_probs=154.0

Q ss_pred             hhHHHhhcCCCCcEEeCCCCCCCCCCCCCC---cccccCCCCCCEEEcCCCC---CCcCCChhh-------cCCCCCCEE
Q 003888           37 FLQIIRESMPSLKYLSMSDSTLGTNSSRIL---DQGLCSLMHLQELYIDNND---LRGSLPWCL-------ANMTSLRIL  103 (788)
Q Consensus        37 ~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~---~~~~~~l~~L~~L~Ls~n~---l~~~~~~~l-------~~l~~L~~L  103 (788)
                      ++..+. .+++|++|+|++|.++   ...+   ...+.++++|++|+|++|.   +++.+|..+       ..+++|++|
T Consensus        24 l~~~l~-~~~~L~~L~L~~n~i~---~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L   99 (386)
T 2ca6_A           24 VFAVLL-EDDSVKEIVLSGNTIG---TEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV   99 (386)
T ss_dssp             TSHHHH-HCSCCCEEECTTSEEC---HHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred             HHHHHh-cCCCccEEECCCCCCC---HHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence            456677 7888888888888874   2211   1246678888888888864   334445444       677888888


Q ss_pred             ECCCCcCcC----cCChhhhcCCCCCCEEECcCccccccCCc---cccccCCCCcEEEccCccccccccccccCCCCccc
Q 003888          104 DVSSNQLTG----SISSSPLVHLTSIEELMLSNNHFQIPISL---EPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQ  176 (788)
Q Consensus       104 ~Ls~n~~~~----~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~---~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  176 (788)
                      +|++|.+.+    .+|. .+.++++|++|++++|.+....+.   ..+..+        ..+.+.               
T Consensus       100 ~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l--------~~~~~~---------------  155 (386)
T 2ca6_A          100 RLSDNAFGPTAQEPLID-FLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL--------AVNKKA---------------  155 (386)
T ss_dssp             ECCSCCCCTTTHHHHHH-HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHH--------HHHHHH---------------
T ss_pred             ECCCCcCCHHHHHHHHH-HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHH--------hhhhhc---------------
Confidence            888888774    2554 567777888888887776522110   011111        000000               


Q ss_pred             ccEEEccCCCCCCCCcCccccCCCCCCEEEcCCCcCCC-CCch--hHhhcCCCCCEEEcCCCcccc-----cCccCcCCC
Q 003888          177 LQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDG-EFPN--WLLENNTKLRQLYLVNDSLTG-----PFRLPIHSH  248 (788)
Q Consensus       177 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~--~~~~~l~~L~~L~L~~~~l~~-----~~~~~l~~~  248 (788)
                                          ...++|++|++++|.+.. .++.  ..+..+++|++|++++|.++.     ..+..+..+
T Consensus       156 --------------------~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~  215 (386)
T 2ca6_A          156 --------------------KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC  215 (386)
T ss_dssp             --------------------HTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC
T ss_pred             --------------------ccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC
Confidence                                000455555555555542 2221  123456677777777776652     223356667


Q ss_pred             CCccEEEcccCcCc----ccCChhhhhcCCCCcEEEcccCcCCCC----Cccccc--CCCCCCEEEcccCcCCC----cc
Q 003888          249 RWLRFLDVSNNNFQ----GHIPVEIGDILPSLISFNISMNALDSS----IPSSFG--NMNFLQILDLSNNQLTG----EI  314 (788)
Q Consensus       249 ~~L~~L~L~~n~i~----~~~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~--~l~~L~~L~l~~n~i~~----~i  314 (788)
                      ++|+.|++++|.++    +.+|..+.. +++|++|++++|.+++.    ++..+.  .+++|++|++++|.+++    .+
T Consensus       216 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l  294 (386)
T 2ca6_A          216 QELKVLDLQDNTFTHLGSSALAIALKS-WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL  294 (386)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHGGG-CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred             CCccEEECcCCCCCcHHHHHHHHHHcc-CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHH
Confidence            77777777777774    344444433 67777777777777654    344553  37778888888888774    27


Q ss_pred             chHHHhcCCCCCEEEccCccCCCcC
Q 003888          315 PEHLAVSCVNLEFLALSNNNLKGHM  339 (788)
Q Consensus       315 ~~~~~~~l~~L~~L~L~~n~i~~~~  339 (788)
                      |..++.++++|++|++++|.+++..
T Consensus       295 ~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          295 KTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHhcCCCceEEEccCCcCCcch
Confidence            7766556777777777777777644

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=6.1e-22  Score=208.65  Aligned_cols=89  Identities=17%  Similarity=0.116  Sum_probs=45.3

Q ss_pred             cccEEECCCCc-ccccCcccccCcccCCeEeCCCCc-CCccCCccccCCCCCCEEECcCCcccccCCccccCC-CCCCEE
Q 003888          592 LLSGLDLSCNK-LIGHIPPQIGNLTRIQTLNLSHNN-LTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL-KTLAVF  668 (788)
Q Consensus       592 ~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L  668 (788)
                      +|+.|++++|. +++..+..+..+++|++|++++|. +.......++.+++|++|++++| ++..   .+..+ ..++.|
T Consensus       223 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L  298 (336)
T 2ast_B          223 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHL  298 (336)
T ss_dssp             TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTS
T ss_pred             CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcce
Confidence            44444444444 333444455556666666666663 22221124556666666666666 3221   22222 224445


Q ss_pred             EccCCcCcccCCCccc
Q 003888          669 SVAYNNLSGEIPEWTA  684 (788)
Q Consensus       669 ~l~~N~l~~~~p~~~~  684 (788)
                      ++++|++++..|.+++
T Consensus       299 ~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          299 QINCSHFTTIARPTIG  314 (336)
T ss_dssp             EESCCCSCCTTCSSCS
T ss_pred             EEecccCccccCCccc
Confidence            5677777776666543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=1e-20  Score=199.21  Aligned_cols=101  Identities=15%  Similarity=0.144  Sum_probs=48.7

Q ss_pred             CcEEeCCCCCCCCCCCCCCcccccCC--CCCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCc-CChhhhcCCCC
Q 003888           48 LKYLSMSDSTLGTNSSRILDQGLCSL--MHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGS-ISSSPLVHLTS  124 (788)
Q Consensus        48 L~~L~Ls~~~l~~~~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~-i~~~~l~~l~~  124 (788)
                      ++.++++++.+.       +..+..+  +++++|++++|.+.+..+. +..+++|++|++++|.+++. ++. .+.++++
T Consensus        49 ~~~l~l~~~~~~-------~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~  119 (336)
T 2ast_B           49 WQTLDLTGKNLH-------PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHG-ILSQCSK  119 (336)
T ss_dssp             SSEEECTTCBCC-------HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHH-HHTTBCC
T ss_pred             heeeccccccCC-------HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHH-HHhhCCC
Confidence            555555555442       1233444  5555555555555544333 33455555555555555432 333 4555555


Q ss_pred             CCEEECcCccccccCCccccccCCCCcEEEccCc
Q 003888          125 IEELMLSNNHFQIPISLEPLFNHSRLKIFDAANN  158 (788)
Q Consensus       125 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n  158 (788)
                      |++|++++|.+.+..+ ..++.+++|++|++++|
T Consensus       120 L~~L~L~~~~l~~~~~-~~l~~~~~L~~L~L~~~  152 (336)
T 2ast_B          120 LQNLSLEGLRLSDPIV-NTLAKNSNLVRLNLSGC  152 (336)
T ss_dssp             CSEEECTTCBCCHHHH-HHHTTCTTCSEEECTTC
T ss_pred             CCEEeCcCcccCHHHH-HHHhcCCCCCEEECCCC
Confidence            5555555555442222 23444445555544444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=4.6e-20  Score=190.76  Aligned_cols=57  Identities=18%  Similarity=0.325  Sum_probs=29.5

Q ss_pred             cccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCccc
Q 003888          592 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN  652 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  652 (788)
                      +|+.|++++|.+++..+  +..+++|++|++++|++++..  .+..+++|++|++++|+++
T Consensus       174 ~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             TCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred             CCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence            44444555544443222  455555555555555555443  2555555555555555554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=3.9e-20  Score=195.34  Aligned_cols=244  Identities=18%  Similarity=0.128  Sum_probs=171.3

Q ss_pred             CEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCcc-ccccCCCCccE-EEcc
Q 003888          350 RSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIP-VGFCQLYSLQI-LDIS  427 (788)
Q Consensus       350 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~-L~l~  427 (788)
                      +.++.++++++ .+|..+  .+++++|++++|+++...+..|.++++|++|++++|++.+.++ .+|.+++++++ +.++
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            46677777777 556544  2467778888777775555567777777777777777654333 45666666554 3444


Q ss_pred             CCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccC-CcCccc
Q 003888          428 DNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGH-NNLEGE  506 (788)
Q Consensus       428 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~  506 (788)
                      +|+++                        .++..+|..+++|++|++++|+++...+..+....++..|++.+ +++...
T Consensus        89 ~N~l~------------------------~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l  144 (350)
T 4ay9_X           89 ANNLL------------------------YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI  144 (350)
T ss_dssp             ETTCC------------------------EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEE
T ss_pred             CCccc------------------------ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccc
Confidence            45554                        34444588889999999999999877666666777788888865 567766


Q ss_pred             cCcccCCCC-CCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeee
Q 003888          507 VPVQLCELN-QLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIY  585 (788)
Q Consensus       507 ~~~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  585 (788)
                      .+..|..+. .++.|++++|+++.+.+..|..                                                
T Consensus       145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~------------------------------------------------  176 (350)
T 4ay9_X          145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNG------------------------------------------------  176 (350)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCCEECTTSSTT------------------------------------------------
T ss_pred             cccchhhcchhhhhhccccccccCCChhhccc------------------------------------------------
Confidence            666777765 5888999999987655544432                                                


Q ss_pred             cccccccccEEECCC-CcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCC
Q 003888          586 QGKVLSLLSGLDLSC-NKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKT  664 (788)
Q Consensus       586 ~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  664 (788)
                           .+|+.|++++ |.++.+.+..|..+++|++|+|++|+|+.+.+..|.   +|+.|.+.++.-...+| .+.++++
T Consensus       177 -----~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP-~l~~l~~  247 (350)
T 4ay9_X          177 -----TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLP-TLEKLVA  247 (350)
T ss_dssp             -----EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCC-CTTTCCS
T ss_pred             -----cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCC-CchhCcC
Confidence                 3688899875 566655556789999999999999999987666654   45556555554444666 4788899


Q ss_pred             CCEEEccCCcCcc
Q 003888          665 LAVFSVAYNNLSG  677 (788)
Q Consensus       665 L~~L~l~~N~l~~  677 (788)
                      |+.++++++.-.+
T Consensus       248 L~~l~l~~~~~c~  260 (350)
T 4ay9_X          248 LMEASLTYPSHCC  260 (350)
T ss_dssp             CCEEECSCHHHHH
T ss_pred             hhhCcCCCCcccc
Confidence            9999998765433

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=6.5e-20  Score=189.63  Aligned_cols=196  Identities=21%  Similarity=0.338  Sum_probs=156.2

Q ss_pred             ccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCc
Q 003888          391 LGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLV  470 (788)
Q Consensus       391 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  470 (788)
                      +..+++|++|++++|.+... + .+..+++|++|++++|.+.+.                        +.  +..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~------------------------~~--~~~l~~L~   88 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDL------------------------AP--LKNLTKIT   88 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC------------------------GG--GTTCCSCC
T ss_pred             HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCC------------------------hh--HccCCCCC
Confidence            34567777777777777643 3 466777777777777766532                        22  66788999


Q ss_pred             EEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCC
Q 003888          471 TLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSL  550 (788)
Q Consensus       471 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~  550 (788)
                      +|++++|++++.  ..+..+++|++|++++|++++..  .+..+++|+.|++++|++.+..+  +..             
T Consensus        89 ~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~-------------  149 (308)
T 1h6u_A           89 ELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAG-------------  149 (308)
T ss_dssp             EEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGG-------------
T ss_pred             EEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccC-------------
Confidence            999999998853  35888999999999999998643  38899999999999998875432  221             


Q ss_pred             CCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCcc
Q 003888          551 KPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGL  630 (788)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  630 (788)
                                                             +++|+.|++++|.+++..+  +..+++|+.|++++|++++.
T Consensus       150 ---------------------------------------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~  188 (308)
T 1h6u_A          150 ---------------------------------------LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI  188 (308)
T ss_dssp             ---------------------------------------CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred             ---------------------------------------CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC
Confidence                                                   5689999999999986443  89999999999999999987


Q ss_pred             CCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCccc
Q 003888          631 IPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGE  678 (788)
Q Consensus       631 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~  678 (788)
                      .+  +..+++|++|++++|++++..  .+..+++|+.|++++|++++.
T Consensus       189 ~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          189 SP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             GG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred             hh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence            54  889999999999999998655  388999999999999999863

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=3e-19  Score=188.50  Aligned_cols=243  Identities=19%  Similarity=0.164  Sum_probs=159.5

Q ss_pred             cEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCE-EEc
Q 003888          252 RFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEF-LAL  330 (788)
Q Consensus       252 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~-L~L  330 (788)
                      ++++.++++++ .+|..+   .+++++|+|++|+++.+.+.+|+++++|++|++++|++.+.+|...+.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            56778888887 777665   3578888888888876666678888888888888888765677666666666654 444


Q ss_pred             cCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccC-CcCCCCCcccccCCCCCCEEeCCCCcccC
Q 003888          331 SNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNN-NSLSGKIPRWLGNLTGLKHIIMPENHLEG  409 (788)
Q Consensus       331 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~l~~n~~~~  409 (788)
                      ..|+++.+.+..|..+++|++|++++|+++...+..+....++..+++.+ +.+....+..|..+.              
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~--------------  153 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--------------  153 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB--------------
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc--------------
Confidence            55666666666666666666666666666654444444445555555544 233322222333321              


Q ss_pred             CccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccC
Q 003888          410 PIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDG  489 (788)
Q Consensus       410 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  489 (788)
                               ..++.|++++|+++.+.+..+...+++++.+.++...+.++..+|..+++|+.||+++|+++...+..   
T Consensus       154 ---------~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---  221 (350)
T 4ay9_X          154 ---------FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---  221 (350)
T ss_dssp             ---------SSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---
T ss_pred             ---------hhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---
Confidence                     23555666666665555555555566666666544446777777899999999999999998654443   


Q ss_pred             CCCCCEEEccCCcCccccCcccCCCCCCCEEEccCC
Q 003888          490 LSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNN  525 (788)
Q Consensus       490 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  525 (788)
                      +.+|+.|.+.++.-....| .+..+++|+.++++++
T Consensus       222 ~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          222 LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence            4567777766554333555 4788999999999764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=5e-20  Score=180.22  Aligned_cols=191  Identities=23%  Similarity=0.294  Sum_probs=151.7

Q ss_pred             CcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccC-cccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCC
Q 003888          469 LVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVP-VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNS  547 (788)
Q Consensus       469 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~  547 (788)
                      -+.+++++|.++. +|..+.  +.+++|++++|++++..+ ..|..+++|+.|++++|++++..+..|..          
T Consensus        13 ~~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------   79 (220)
T 2v70_A           13 GTTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG----------   79 (220)
T ss_dssp             TTEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT----------
T ss_pred             CCEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC----------
Confidence            3689999999985 565443  567999999999997754 56889999999999999998777766665          


Q ss_pred             CCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcC
Q 003888          548 YSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL  627 (788)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l  627 (788)
                                                                +++|+.|+|++|.+++..+..|..+++|++|+|++|+|
T Consensus        80 ------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  117 (220)
T 2v70_A           80 ------------------------------------------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI  117 (220)
T ss_dssp             ------------------------------------------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCC
T ss_pred             ------------------------------------------CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcC
Confidence                                                      44899999999999988888899999999999999999


Q ss_pred             CccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCC-cccccCCCCccccCCCCCCCCCCCC
Q 003888          628 TGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPE-WTAQFATFNESSYEGNTFLCGLPLP  706 (788)
Q Consensus       628 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~~~gn~~~c~~~l~  706 (788)
                      +++.|..|.++++|++|+|++|++++..|..|..+++|+.|++++|++.|..+- |+..+..-.. ...+++        
T Consensus       118 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~~-~~~~~~--------  188 (220)
T 2v70_A          118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKR-IVTGNP--------  188 (220)
T ss_dssp             CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHHHSC-CBCCCC--------
T ss_pred             CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHHhcC-ccccCC--------
Confidence            999999999999999999999999988899999999999999999999987652 2222111000 122332        


Q ss_pred             CCCCCCCCCcccCCCCC
Q 003888          707 ICRSPATMSEASIGNER  723 (788)
Q Consensus       707 ~c~~~~~~~~~~~~~~~  723 (788)
                      .|..|...++..+....
T Consensus       189 ~C~~P~~l~g~~l~~l~  205 (220)
T 2v70_A          189 RCQKPYFLKEIPIQDVA  205 (220)
T ss_dssp             EEEESGGGTTEEGGGSC
T ss_pred             ccCCChHHCCCChhhCC
Confidence            57777776666544443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.81  E-value=1.1e-19  Score=192.72  Aligned_cols=113  Identities=20%  Similarity=0.200  Sum_probs=58.8

Q ss_pred             cccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccc---cCCCCCCEE
Q 003888          592 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL---VELKTLAVF  668 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L  668 (788)
                      +|+.|+|++|++++..+..|..+++|+.|+|++|+|+++.+..|.++++|++|+|++|+++...+..|   ..+++|+.|
T Consensus        89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L  168 (361)
T 2xot_A           89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL  168 (361)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEE
T ss_pred             CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEE
Confidence            55555555555555545555555555555555555555555555555555555555555553333333   345555555


Q ss_pred             EccCCcCcccCCCcccccCC--CCccccCCCCCCCCCC
Q 003888          669 SVAYNNLSGEIPEWTAQFAT--FNESSYEGNTFLCGLP  704 (788)
Q Consensus       669 ~l~~N~l~~~~p~~~~~~~~--~~~~~~~gn~~~c~~~  704 (788)
                      ++++|++++..+..+..+..  +..+++.+|||.|+|+
T Consensus       169 ~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK  206 (361)
T ss_dssp             ECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred             ECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence            55555555433333333332  2445556666666553

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=3.9e-19  Score=172.72  Aligned_cols=162  Identities=26%  Similarity=0.292  Sum_probs=138.4

Q ss_pred             CCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccC
Q 003888          466 CSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSN  545 (788)
Q Consensus       466 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~  545 (788)
                      .+++++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++.+..+..+..        
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------   98 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK--------   98 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC--------
Confidence            357899999999998777777888999999999999998777777888999999999999988666555544        


Q ss_pred             CCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCC
Q 003888          546 NSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHN  625 (788)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N  625 (788)
                                                                  +++|+.|++++|++++..+..|..+++|++|++++|
T Consensus        99 --------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  134 (208)
T 2o6s_A           99 --------------------------------------------LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN  134 (208)
T ss_dssp             --------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             --------------------------------------------ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC
Confidence                                                        458999999999999877777899999999999999


Q ss_pred             cCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCCccccc
Q 003888          626 NLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQF  686 (788)
Q Consensus       626 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~  686 (788)
                      +++++.+..|..+++|++|++++|++.+       .+++|+.|+++.|+++|.+|.+++.+
T Consensus       135 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          135 QLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             ccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence            9998888889999999999999998874       35678999999999999999876543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=1.5e-18  Score=169.63  Aligned_cols=156  Identities=20%  Similarity=0.224  Sum_probs=101.5

Q ss_pred             cEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCC-ccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEcc
Q 003888          445 EQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIP-NWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLS  523 (788)
Q Consensus       445 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  523 (788)
                      +.+++++|.+. .+|.. +  .+.++.|++++|++++..+ ..|..+++|++|++++|++++..+..|.++++|++|+++
T Consensus        14 ~~l~~s~n~l~-~iP~~-~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEH-I--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCS-SCCSC-C--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCcc-cCccC-C--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            46666666663 34443 2  2345677777777765533 346667777777777777776666667777777777777


Q ss_pred             CCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcc
Q 003888          524 NNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKL  603 (788)
Q Consensus       524 ~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l  603 (788)
                      +|++.+..+..|..                                                    +++|++|+|++|++
T Consensus        90 ~N~l~~~~~~~~~~----------------------------------------------------l~~L~~L~Ls~N~l  117 (220)
T 2v70_A           90 SNRLENVQHKMFKG----------------------------------------------------LESLKTLMLRSNRI  117 (220)
T ss_dssp             SSCCCCCCGGGGTT----------------------------------------------------CSSCCEEECTTSCC
T ss_pred             CCccCccCHhHhcC----------------------------------------------------CcCCCEEECCCCcC
Confidence            77776555544433                                                    33677777777777


Q ss_pred             cccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCC
Q 003888          604 IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP  656 (788)
Q Consensus       604 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  656 (788)
                      ++..|..|..+++|+.|+|++|+++++.|..|..+++|++|++++|++.+..+
T Consensus       118 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            76666677777777777777777776666777777777777777777765443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=1.2e-18  Score=193.21  Aligned_cols=166  Identities=27%  Similarity=0.340  Sum_probs=111.3

Q ss_pred             CccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEc
Q 003888          443 SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDL  522 (788)
Q Consensus       443 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  522 (788)
                      +|+.|++++|.+. .+|    ..+++|+.|++++|++++ +|. +..  +|++|++++|++++ +|.   .+++|+.|++
T Consensus        81 ~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L  147 (571)
T 3cvr_A           81 QITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINA  147 (571)
T ss_dssp             TCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred             CCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeC
Confidence            3444444444443 333    234677788888887775 555 443  78888888888775 444   5677888888


Q ss_pred             cCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCc
Q 003888          523 SNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNK  602 (788)
Q Consensus       523 s~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~  602 (788)
                      ++|++++ +|.   .                                                    +++|+.|+|++|+
T Consensus       148 s~N~l~~-lp~---~----------------------------------------------------l~~L~~L~Ls~N~  171 (571)
T 3cvr_A          148 DNNQLTM-LPE---L----------------------------------------------------PTSLEVLSVRNNQ  171 (571)
T ss_dssp             CSSCCSC-CCC---C----------------------------------------------------CTTCCEEECCSSC
T ss_pred             CCCccCc-CCC---c----------------------------------------------------CCCcCEEECCCCC
Confidence            8887764 222   1                                                    3467888888888


Q ss_pred             ccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCC-------CEEECcCCcccccCCccccCCCCCCEEEccCCcC
Q 003888          603 LIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHI-------ESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNL  675 (788)
Q Consensus       603 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l  675 (788)
                      +++ +|. |.  ++|+.|+|++|+|+.+ |. |..  +|       +.|+|++|+|+ .+|..+..+++|+.|++++|++
T Consensus       172 L~~-lp~-l~--~~L~~L~Ls~N~L~~l-p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          172 LTF-LPE-LP--ESLEALDVSTNLLESL-PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             CSC-CCC-CC--TTCCEEECCSSCCSSC-CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSC
T ss_pred             CCC-cch-hh--CCCCEEECcCCCCCch-hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcC
Confidence            875 555 55  7888888888888844 44 543  66       88888888887 5677777788888888888888


Q ss_pred             cccCCCccccc
Q 003888          676 SGEIPEWTAQF  686 (788)
Q Consensus       676 ~~~~p~~~~~~  686 (788)
                      ++.+|..+..+
T Consensus       243 ~~~~p~~l~~l  253 (571)
T 3cvr_A          243 SSRIRESLSQQ  253 (571)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CCcCHHHHHHh
Confidence            88777665554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=2.3e-18  Score=168.38  Aligned_cols=154  Identities=21%  Similarity=0.247  Sum_probs=107.1

Q ss_pred             cEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccC
Q 003888          445 EQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSN  524 (788)
Q Consensus       445 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  524 (788)
                      +.++++++.+. .+|.. +  .++++.|++++|++++..+..|..+++|++|++++|++++..|..|.++++|++|++++
T Consensus        14 ~~v~c~~~~l~-~iP~~-l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTN-L--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCCSS-C--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCCc-c--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            45666666663 44443 2  15677777777777766666677777777777777777766677777777777777777


Q ss_pred             CcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCccc
Q 003888          525 NNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI  604 (788)
Q Consensus       525 n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  604 (788)
                      |++++..+..|..                                                    +++|+.|+|++|+++
T Consensus        90 N~l~~l~~~~f~~----------------------------------------------------l~~L~~L~L~~N~l~  117 (220)
T 2v9t_B           90 NKITELPKSLFEG----------------------------------------------------LFSLQLLLLNANKIN  117 (220)
T ss_dssp             SCCCCCCTTTTTT----------------------------------------------------CTTCCEEECCSSCCC
T ss_pred             CcCCccCHhHccC----------------------------------------------------CCCCCEEECCCCCCC
Confidence            7776555544443                                                    346777777777777


Q ss_pred             ccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCccccc
Q 003888          605 GHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGK  654 (788)
Q Consensus       605 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  654 (788)
                      +..|..|..+++|+.|+|++|+++++.+..|..+++|++|++++|++.+.
T Consensus       118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            77777777777777777777777777666777777777777777777653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=4e-18  Score=167.89  Aligned_cols=157  Identities=26%  Similarity=0.263  Sum_probs=132.0

Q ss_pred             CCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCC
Q 003888          468 SLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNS  547 (788)
Q Consensus       468 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~  547 (788)
                      +.+.++.+++.++ .+|..+.  ++|++|++++|.+++..+..|..+++|+.|++++|++.+..+..|..          
T Consensus        20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~----------   86 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS----------   86 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----------
T ss_pred             eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc----------
Confidence            3567999999887 4555443  88999999999999888888999999999999999997666555554          


Q ss_pred             CCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcC
Q 003888          548 YSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL  627 (788)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l  627 (788)
                                                                +++|+.|+|++|++++..+..|..+++|++|+|++|++
T Consensus        87 ------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l  124 (229)
T 3e6j_A           87 ------------------------------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL  124 (229)
T ss_dssp             ------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ------------------------------------------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence                                                      44899999999999987777788999999999999999


Q ss_pred             CccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCC
Q 003888          628 TGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIP  680 (788)
Q Consensus       628 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p  680 (788)
                      + .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++.|..+
T Consensus       125 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          125 T-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             C-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             c-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            8 457778889999999999999987777778889999999999999987665

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.77  E-value=3.9e-18  Score=165.59  Aligned_cols=131  Identities=29%  Similarity=0.276  Sum_probs=59.9

Q ss_pred             CCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEE
Q 003888          298 NFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLY  377 (788)
Q Consensus       298 ~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  377 (788)
                      ++|++|++++|.++ .++...+..+++|++|++++|+++++.+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        28 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           28 AQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            34555555555554 34333333445555555555555444444444444555555555444433333344444444444


Q ss_pred             ccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCC
Q 003888          378 LNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDN  429 (788)
Q Consensus       378 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  429 (788)
                      +++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence            4444444333333444444444444444444333333444444444444444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=2.7e-18  Score=181.94  Aligned_cols=160  Identities=29%  Similarity=0.320  Sum_probs=119.0

Q ss_pred             CCCcEEEccCCcCCCCCCcccc-CCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccC
Q 003888          467 SSLVTLDLSYNRLNGSIPNWVD-GLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSN  545 (788)
Q Consensus       467 ~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~  545 (788)
                      +.++.|+|++|++++..+..+. .+++|++|++++|++++..+..|.++++|+.|++++|++.+..+..|..        
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------  110 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD--------  110 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT--------
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCC--------
Confidence            3567788888877776666666 7788888888888887777777778888888888888777655555544        


Q ss_pred             CCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCC
Q 003888          546 NSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHN  625 (788)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N  625 (788)
                                                                  +++|+.|+|++|++++..|..|..+++|+.|+|++|
T Consensus       111 --------------------------------------------l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N  146 (361)
T 2xot_A          111 --------------------------------------------LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN  146 (361)
T ss_dssp             --------------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             --------------------------------------------CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC
Confidence                                                        347888888888888777778888888888888888


Q ss_pred             cCCccCCccc---cCCCCCCEEECcCCcccccCCccccCCCC--CCEEEccCCcCccc
Q 003888          626 NLTGLIPSTF---SNLKHIESLDLSYNKLNGKIPHQLVELKT--LAVFSVAYNNLSGE  678 (788)
Q Consensus       626 ~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~l~~N~l~~~  678 (788)
                      +|+++.+..|   ..+++|+.|+|++|+++...+..+..++.  ++.|++++|++.|.
T Consensus       147 ~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          147 QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             CCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             cCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence            8887666666   56788888888888888655566777776  37788888888764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=1.8e-17  Score=163.26  Aligned_cols=155  Identities=28%  Similarity=0.326  Sum_probs=98.6

Q ss_pred             ccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEcc
Q 003888          444 IEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLS  523 (788)
Q Consensus       444 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  523 (788)
                      .+.++.+++.+ ..+|.. +  .++|+.|++++|.+++..|..|..+++|++|++++|+++...+..|..+++|+.|+++
T Consensus        21 ~~~v~c~~~~l-~~ip~~-~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           21 GTTVDCRSKRH-ASVPAG-I--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TTEEECTTSCC-SSCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEeEccCCCc-CccCCC-C--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            44566666655 344443 1  2566677777777766666666666777777777777665555556666777777777


Q ss_pred             CCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcc
Q 003888          524 NNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKL  603 (788)
Q Consensus       524 ~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l  603 (788)
                      +|++++..+..|..                                                    +++|+.|+|++|++
T Consensus        97 ~N~l~~l~~~~~~~----------------------------------------------------l~~L~~L~Ls~N~l  124 (229)
T 3e6j_A           97 TNQLTVLPSAVFDR----------------------------------------------------LVHLKELFMCCNKL  124 (229)
T ss_dssp             SSCCCCCCTTTTTT----------------------------------------------------CTTCCEEECCSSCC
T ss_pred             CCcCCccChhHhCc----------------------------------------------------chhhCeEeccCCcc
Confidence            77666555444443                                                    33666777777776


Q ss_pred             cccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccC
Q 003888          604 IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI  655 (788)
Q Consensus       604 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  655 (788)
                      + .+|..+..+++|+.|+|++|+++++.+..|..+++|+.|++++|++.+..
T Consensus       125 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          125 T-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             C-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             c-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            6 55666666677777777777776666666666677777777777666543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=8.8e-18  Score=171.96  Aligned_cols=151  Identities=26%  Similarity=0.380  Sum_probs=106.5

Q ss_pred             ccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCccccc
Q 003888          463 FFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE  542 (788)
Q Consensus       463 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  542 (788)
                      +..+++|++|++++|++++..+  +..+++|++|++++|.+++.  ..+..+++|+.|++++|++.+.  ..+.      
T Consensus        64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~------  131 (291)
T 1h6t_A           64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLV------  131 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGG------
T ss_pred             HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhc------
Confidence            5556677777777777765433  66777777777777777642  2367777777777777776542  1111      


Q ss_pred             ccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeC
Q 003888          543 SSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL  622 (788)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  622 (788)
                                                                    .+++|+.|++++|++++.  ..+..+++|+.|++
T Consensus       132 ----------------------------------------------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L  163 (291)
T 1h6t_A          132 ----------------------------------------------HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSL  163 (291)
T ss_dssp             ----------------------------------------------GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred             ----------------------------------------------CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEc
Confidence                                                          145777788888877754  46778888888888


Q ss_pred             CCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcc
Q 003888          623 SHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSG  677 (788)
Q Consensus       623 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~  677 (788)
                      ++|++++..+  +..+++|++|++++|++++ +| .+..+++|+.|++++|+++.
T Consensus       164 ~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          164 EDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             cCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            8888887654  7788888888888888874 34 37788888888888888875

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=1.9e-17  Score=158.02  Aligned_cols=135  Identities=24%  Similarity=0.373  Sum_probs=111.8

Q ss_pred             cccEEECCCCcccccCcc-cccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEc
Q 003888          592 LLSGLDLSCNKLIGHIPP-QIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSV  670 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  670 (788)
                      .++.|++++|.+++..+. .|+.+++|++|+|++|+|+++.|..|.++++|++|+|++|++++..|..|..+++|++|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            688888999888876664 4888888999999999988888888888889999999999988888888888888999999


Q ss_pred             cCCcCcccCCCcccccCCCCccccCCCCCCCCCCCC----------------CCCCCCCCCcccCCCCCCCC
Q 003888          671 AYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP----------------ICRSPATMSEASIGNERDDN  726 (788)
Q Consensus       671 ~~N~l~~~~p~~~~~~~~~~~~~~~gn~~~c~~~l~----------------~c~~~~~~~~~~~~~~~~~~  726 (788)
                      ++|++++..|..+..+.++..+++.+|++.|+|++.                .|..|....+..+.....+.
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~~l~~~~l~~l~~~~  181 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSE  181 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTTSBGGGSCTTT
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCChHHcCCChhhCcHhh
Confidence            999988888888888888888888999998888642                68888888887665555443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.72  E-value=1.7e-17  Score=158.21  Aligned_cols=135  Identities=22%  Similarity=0.373  Sum_probs=120.3

Q ss_pred             ccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEc
Q 003888          591 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSV  670 (788)
Q Consensus       591 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  670 (788)
                      ++++.|++++|.++ .+|..|..+++|+.|+|++|+|+++.+..|.++++|++|+|++|++++..|..|..+++|+.|++
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            47999999999998 67789999999999999999999998899999999999999999999888889999999999999


Q ss_pred             cCCcCcccCCCcccccCCCCccccCCCCCCCCCCCC----------------CCCCCCCCCcccCCCCCCCC
Q 003888          671 AYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP----------------ICRSPATMSEASIGNERDDN  726 (788)
Q Consensus       671 ~~N~l~~~~p~~~~~~~~~~~~~~~gn~~~c~~~l~----------------~c~~~~~~~~~~~~~~~~~~  726 (788)
                      ++|+++...+..+..+..+..+++.+|||.|+|++.                .|..|....++.+.....+.
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~  181 (193)
T 2wfh_A          110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKK  181 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEESGGGTTCBTTTSCGGG
T ss_pred             CCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCCchHHCCCCcccCChHH
Confidence            999999877777888999999999999999999642                58888888887666655443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.71  E-value=4.6e-17  Score=182.65  Aligned_cols=62  Identities=29%  Similarity=0.346  Sum_probs=33.1

Q ss_pred             ccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCC
Q 003888          463 FFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLH  528 (788)
Q Consensus       463 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~  528 (788)
                      +..+++|+.|+|++|.+.+ ++ .+..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|++.
T Consensus        83 l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~  144 (605)
T 1m9s_A           83 LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT  144 (605)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccC
Confidence            4455556666666665553 22 355555566666655555532  23555555555555555554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.71  E-value=7e-18  Score=176.42  Aligned_cols=292  Identities=16%  Similarity=0.142  Sum_probs=175.6

Q ss_pred             CCCCccEEEcccCCcccccchhHHHhhc-CCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhc
Q 003888           17 HFKSLDHLDMVFARTALNTSFLQIIRES-MPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLA   95 (788)
Q Consensus        17 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~-l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~   95 (788)
                      .+.+++.|.+  ++. +.......+. . +++|++|||++|++...  ....   +.++.++.+.+..+.+   .+.+|.
T Consensus        23 ~~~~l~~L~l--~g~-i~~~~~~~l~-~~l~~L~~LdLs~n~i~~~--~~~~---~~~~~~~~~~~~~~~I---~~~aF~   90 (329)
T 3sb4_A           23 EANSITHLTL--TGK-LNAEDFRHLR-DEFPSLKVLDISNAEIKMY--SGKA---GTYPNGKFYIYMANFV---PAYAFS   90 (329)
T ss_dssp             HHHHCSEEEE--EEE-ECHHHHHHHH-HSCTTCCEEEEEEEEECCE--EESS---SSSGGGCCEEECTTEE---CTTTTE
T ss_pred             hhCceeEEEE--ecc-ccHHHHHHHH-HhhccCeEEecCcceeEEe--cCcc---cccccccccccccccc---CHHHhc
Confidence            3678999999  654 3333344566 5 89999999999998410  1111   1223355566666633   345677


Q ss_pred             C--------CCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCcccccccccc
Q 003888           96 N--------MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITES  167 (788)
Q Consensus        96 ~--------l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  167 (788)
                      +        |++|+.|++++ .++ .|+..+|.+|++|+++++++|.+. .++...|.++.++..+....+........ 
T Consensus        91 ~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~-  166 (329)
T 3sb4_A           91 NVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNR-  166 (329)
T ss_dssp             EEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTT-
T ss_pred             ccccccccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhcccc-
Confidence            7        89999999988 777 788878888999999999888776 45556777777777776554321100000 


Q ss_pred             ccCCCCcccccEEEccCCCCCCCCcCccccCCCCCC-EEEcCCCcCCCCCchhHhhc---CCCCCEEEcCCCcccccCcc
Q 003888          168 HSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLE-DVRLSHVNMDGEFPNWLLEN---NTKLRQLYLVNDSLTGPFRL  243 (788)
Q Consensus       168 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~---l~~L~~L~L~~~~l~~~~~~  243 (788)
                                             --...+..+..|+ .+.+...   +.++..++..   ..+++.+.+.++-.......
T Consensus       167 -----------------------i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~  220 (329)
T 3sb4_A          167 -----------------------WEHFAFIEGEPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKL  220 (329)
T ss_dssp             -----------------------TTTSCEEESCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHH
T ss_pred             -----------------------ccccccccccccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHH
Confidence                                   0001122233333 2333221   1122222221   23444444443311111110


Q ss_pred             CcCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCC-EEEcccCcCCCccchHHHhcC
Q 003888          244 PIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQ-ILDLSNNQLTGEIPEHLAVSC  322 (788)
Q Consensus       244 ~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~-~L~l~~n~i~~~i~~~~~~~l  322 (788)
                      ....+++|+.+++++|+++ .++...|..+++|+++++.+| +..+.+.+|.++++|+ .+++.+ .++ .|+...|.+|
T Consensus       221 l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c  296 (329)
T 3sb4_A          221 IRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGC  296 (329)
T ss_dssp             HHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTC
T ss_pred             HHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCC
Confidence            0112566777777776666 666666666777777777766 6656666777777777 777777 565 6777777777


Q ss_pred             CCCCEEEccCccCCCcCcccCcCCCCCCEEec
Q 003888          323 VNLEFLALSNNNLKGHMFSRNFNLTNLRSLQL  354 (788)
Q Consensus       323 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  354 (788)
                      ++|+.++++.|.++.+....|.++++|+.++.
T Consensus       297 ~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          297 DNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             ccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            77777777777777777777777777777653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.70  E-value=3.6e-16  Score=173.24  Aligned_cols=178  Identities=27%  Similarity=0.352  Sum_probs=104.4

Q ss_pred             CCCEEEcCCCcccccCccCcCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEc
Q 003888          226 KLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDL  305 (788)
Q Consensus       226 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  305 (788)
                      +++.|++++|.+++ +|..+  .++|++|++++|.++ .+|    ..+++|++|++++|.+++ +|. +.+  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            56666666666655 33322  255666666666666 555    224666667776666665 444 443  6667777


Q ss_pred             ccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCC
Q 003888          306 SNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSG  385 (788)
Q Consensus       306 ~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~  385 (788)
                      ++|.++ .+|.    .+++|++|++++|.++++..    .+++|++|++++|.+++ +|. +.  ++|+.|++++|.++ 
T Consensus       128 s~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-  193 (571)
T 3cvr_A          128 DNNQLT-MLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-  193 (571)
T ss_dssp             CSSCCS-CCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred             CCCcCC-CCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence            777666 3555    35666777777666665332    35666667777666664 444 44  66667777766666 


Q ss_pred             CCcccccCCCCC-------CEEeCCCCcccCCccccccCCCCccEEEccCCcCCC
Q 003888          386 KIPRWLGNLTGL-------KHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISG  433 (788)
Q Consensus       386 ~~~~~~~~l~~L-------~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~  433 (788)
                      .+|. +..  +|       +.|++++|.++ .+|..+..+++|+.|++++|.+++
T Consensus       194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          194 SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred             chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCC
Confidence            3443 333  44       66666666666 345555556666666666666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=1.7e-17  Score=173.49  Aligned_cols=75  Identities=16%  Similarity=0.087  Sum_probs=35.6

Q ss_pred             ccEEECCCCcccccCcccccCcccCC-eEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEE
Q 003888          593 LSGLDLSCNKLIGHIPPQIGNLTRIQ-TLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFS  669 (788)
Q Consensus       593 L~~L~Ls~n~l~~~~~~~l~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  669 (788)
                      |+.+++.+| +..+.+.+|.++++|+ .+++.+ +++.+.+.+|.++++|+++++++|.++...+.+|.++++|+.++
T Consensus       252 L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          252 LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            333333333 3333444445555555 555544 44444445555555555555555555444444555555555443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.70  E-value=1.8e-16  Score=162.24  Aligned_cols=170  Identities=22%  Similarity=0.346  Sum_probs=104.3

Q ss_pred             CCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCE
Q 003888          248 HRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEF  327 (788)
Q Consensus       248 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~  327 (788)
                      +++|+.|++++|.+. .++.  ...+++|++|++++|.+++..+  +.++++|++|++++|.++ .++.  +..+++|++
T Consensus        45 l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~  116 (291)
T 1h6t_A           45 LNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKKLKS  116 (291)
T ss_dssp             HHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG--GTTCTTCCE
T ss_pred             cCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh--hccCCCCCE
Confidence            444555555555544 2222  2225566666666666654433  666666666666666665 3443  235666666


Q ss_pred             EEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcc
Q 003888          328 LALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHL  407 (788)
Q Consensus       328 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~  407 (788)
                      |++++|++++.  ..+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++..+  +..+++|++|++++|.+
T Consensus       117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence            66666666653  3455666777777777776643  456667777777777777765433  66677777777777777


Q ss_pred             cCCccccccCCCCccEEEccCCcCCC
Q 003888          408 EGPIPVGFCQLYSLQILDISDNNISG  433 (788)
Q Consensus       408 ~~~~~~~~~~l~~L~~L~l~~n~~~~  433 (788)
                      ++. + .+..+++|+.|++++|++..
T Consensus       191 ~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          191 SDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCC-h-hhccCCCCCEEECcCCcccC
Confidence            643 2 36677777777777776653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=6e-17  Score=162.94  Aligned_cols=152  Identities=22%  Similarity=0.261  Sum_probs=127.2

Q ss_pred             ccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCccccc
Q 003888          463 FFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE  542 (788)
Q Consensus       463 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  542 (788)
                      +..+++|+.|++++|.++. ++ .+..+++|++|++++|++++..+  +..+++|+.|++++|++.+..+...       
T Consensus        37 ~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~-------  105 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS-------  105 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC-------
T ss_pred             hhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc-------
Confidence            6778899999999999884 44 67889999999999999986554  8899999999999998875322110       


Q ss_pred             ccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeC
Q 003888          543 SSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL  622 (788)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  622 (788)
                                                                      ++|+.|++++|++++. + .+..+++|+.|++
T Consensus       106 ------------------------------------------------~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~L  135 (263)
T 1xeu_A          106 ------------------------------------------------ACLSRLFLDNNELRDT-D-SLIHLKNLEILSI  135 (263)
T ss_dssp             ------------------------------------------------SSCCEEECCSSCCSBS-G-GGTTCTTCCEEEC
T ss_pred             ------------------------------------------------CcccEEEccCCccCCC-h-hhcCcccccEEEC
Confidence                                                            3799999999999864 3 6889999999999


Q ss_pred             CCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccC
Q 003888          623 SHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEI  679 (788)
Q Consensus       623 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~  679 (788)
                      ++|+++++  ..+..+++|++|++++|++++.  ..+..+++|+.|++++|++++..
T Consensus       136 s~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          136 RNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             TTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             CCCcCCCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence            99999976  3688899999999999999866  67889999999999999998763

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=6.7e-17  Score=155.19  Aligned_cols=155  Identities=16%  Similarity=0.277  Sum_probs=124.3

Q ss_pred             ccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCccccc
Q 003888          463 FFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE  542 (788)
Q Consensus       463 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  542 (788)
                      ...+++|+.|++++|.++ .+| .+..+++|++|++++|.++.  +..+..+++|++|++++|++.+..+..+..     
T Consensus        40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-----  110 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSG-----  110 (197)
T ss_dssp             HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTT-----
T ss_pred             hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcC-----
Confidence            456678999999999888 445 57888999999999997763  346888999999999999887655555544     


Q ss_pred             ccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeC
Q 003888          543 SSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL  622 (788)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  622 (788)
                                                                     +++|+.|++++|++++..|..++.+++|++|++
T Consensus       111 -----------------------------------------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L  143 (197)
T 4ezg_A          111 -----------------------------------------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDL  143 (197)
T ss_dssp             -----------------------------------------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred             -----------------------------------------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence                                                           458999999999998878888999999999999


Q ss_pred             CCCc-CCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcc
Q 003888          623 SHNN-LTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSG  677 (788)
Q Consensus       623 s~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~  677 (788)
                      ++|+ ++.+ | .+..+++|++|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus       144 ~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          144 SYNGAITDI-M-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CSCTBCCCC-G-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             cCCCCcccc-H-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            9998 7655 3 68889999999999999985 44 77889999999999998764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=1.6e-16  Score=151.66  Aligned_cols=131  Identities=28%  Similarity=0.392  Sum_probs=72.2

Q ss_pred             cEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCc-ccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCC
Q 003888          470 VTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPV-QLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSY  548 (788)
Q Consensus       470 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~  548 (788)
                      +.+++++|.++ .+|..+.  .++++|++++|++++..+. .|..+++|++|++++|++++..|..|..           
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----------   76 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-----------   76 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-----------
Confidence            56666666665 3444332  2666666666666654443 3555666666666666655544444433           


Q ss_pred             CCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCC
Q 003888          549 SLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT  628 (788)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~  628 (788)
                                                               +++|+.|+|++|++++..+..|..+++|++|+|++|+++
T Consensus        77 -----------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  115 (192)
T 1w8a_A           77 -----------------------------------------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS  115 (192)
T ss_dssp             -----------------------------------------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred             -----------------------------------------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence                                                     224555555555555555555555555555555555555


Q ss_pred             ccCCccccCCCCCCEEECcCCcccccC
Q 003888          629 GLIPSTFSNLKHIESLDLSYNKLNGKI  655 (788)
Q Consensus       629 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~  655 (788)
                      +..|..|..+++|++|++++|++.+..
T Consensus       116 ~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A          116 CVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             EECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             eeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            555555555555555555555555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.68  E-value=1.5e-15  Score=162.84  Aligned_cols=331  Identities=15%  Similarity=0.159  Sum_probs=174.9

Q ss_pred             CChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCc
Q 003888          265 IPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNF  344 (788)
Q Consensus       265 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~  344 (788)
                      |....|..+.+|+++.+.. .++.+...+|.++++|+.+++.++ ++ .++...|.++.+|+.+.+..+ +..+...+|.
T Consensus        62 Ig~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~  137 (394)
T 4fs7_A           62 IGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFK  137 (394)
T ss_dssp             ECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred             hHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeee
Confidence            3333444444555555542 244344445555666666665443 33 555555555666665555432 3444444454


Q ss_pred             CCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEE
Q 003888          345 NLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQIL  424 (788)
Q Consensus       345 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  424 (788)
                      ++..++......  .......+|.+|++|+.+.+.++. .......|.++++|+.+.+..+ ++.+...+|.++..|+.+
T Consensus       138 ~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i  213 (394)
T 4fs7_A          138 GCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM  213 (394)
T ss_dssp             TCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred             cccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence            443332222221  122334566777777777776543 2244556667777777777665 443555667777777766


Q ss_pred             EccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCc
Q 003888          425 DISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLE  504 (788)
Q Consensus       425 ~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  504 (788)
                      .+..+... .....+....++.+.+....  ..+...+|..+..++.+.+..+... .....|..+..++.+....+.+ 
T Consensus       214 ~~~~~~~~-i~~~~~~~~~l~~i~ip~~~--~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i-  288 (394)
T 4fs7_A          214 EFPNSLYY-LGDFALSKTGVKNIIIPDSF--TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV-  288 (394)
T ss_dssp             CCCTTCCE-ECTTTTTTCCCCEEEECTTC--CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE-
T ss_pred             ecCCCceE-eehhhcccCCCceEEECCCc--eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee-
Confidence            66554322 22223334455555554322  2344455667777777777665433 4455566666777666655432 


Q ss_pred             cccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceee
Q 003888          505 GEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYI  584 (788)
Q Consensus       505 ~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  584 (788)
                        ....|..+.+|+.+.+.++ +..+...+|..+                                              
T Consensus       289 --~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c----------------------------------------------  319 (394)
T 4fs7_A          289 --PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESC----------------------------------------------  319 (394)
T ss_dssp             --CTTTTTTCTTCCEEEECTT-CCEECTTTTTTC----------------------------------------------
T ss_pred             --ccccccccccccccccccc-cceechhhhcCC----------------------------------------------
Confidence              2335666666776666543 333333344332                                              


Q ss_pred             ecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCC
Q 003888          585 YQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKT  664 (788)
Q Consensus       585 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  664 (788)
                            ++|+.+++..+ ++.+...+|.++++|+.+++..+ ++.+...+|.++++|+++++..+ +. .+..+|.++++
T Consensus       320 ------~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~  389 (394)
T 4fs7_A          320 ------TSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTK  389 (394)
T ss_dssp             ------TTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCE
T ss_pred             ------CCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCC
Confidence                  25566666433 44455556666666666666554 55555566666666666666544 22 22345555555


Q ss_pred             CCE
Q 003888          665 LAV  667 (788)
Q Consensus       665 L~~  667 (788)
                      |+.
T Consensus       390 L~~  392 (394)
T 4fs7_A          390 FKW  392 (394)
T ss_dssp             EEE
T ss_pred             CcE
Confidence            544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.68  E-value=2.1e-15  Score=160.66  Aligned_cols=266  Identities=14%  Similarity=0.145  Sum_probs=170.9

Q ss_pred             CCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEe
Q 003888          322 CVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHII  401 (788)
Q Consensus       322 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  401 (788)
                      +..++.+.+.+ .++.+...+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+.......|.+|++|+.++
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            45566666653 3455555555553 5666665544 443444455553 455555543 33333334444455555555


Q ss_pred             CCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCC
Q 003888          402 MPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNG  481 (788)
Q Consensus       402 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~  481 (788)
                      +.+                        |.++......|...+|+.+.+..+  ...++..+|.+|++|+.+++..+ ++.
T Consensus       187 l~~------------------------n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~  239 (401)
T 4fdw_A          187 LSK------------------------TKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VST  239 (401)
T ss_dssp             CTT------------------------SCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCE
T ss_pred             cCC------------------------CcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccC
Confidence            544                        444444444444444555555433  24566677889999999999875 555


Q ss_pred             CCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCC-----CCCCCCCcCcccccccCCCCCCCCcccc
Q 003888          482 SIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLH-----GPIPPCFDNTTLHESSNNSYSLKPFETS  556 (788)
Q Consensus       482 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (788)
                      ....+|.+ .+|+.+.+ .+.++.+...+|.++++|+.+++.+|.+.     .+.+.+|..                   
T Consensus       240 I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~-------------------  298 (401)
T 4fdw_A          240 IGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEG-------------------  298 (401)
T ss_dssp             ECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTT-------------------
T ss_pred             cccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhC-------------------
Confidence            66677777 78999999 45566677888999999999999887664     223333433                   


Q ss_pred             cccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCcccc
Q 003888          557 LVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFS  636 (788)
Q Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  636 (788)
                                                       +++|+.+++. +.++.+...+|.++++|+.++|..| ++.+.+.+|.
T Consensus       299 ---------------------------------c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~  343 (401)
T 4fdw_A          299 ---------------------------------CPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFN  343 (401)
T ss_dssp             ---------------------------------CTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSS
T ss_pred             ---------------------------------CccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCC
Confidence                                             3478888887 4466677778888888888888554 7777778888


Q ss_pred             CCCCCCEEECcCCcccccCCccccCCC-CCCEEEccCCcCc
Q 003888          637 NLKHIESLDLSYNKLNGKIPHQLVELK-TLAVFSVAYNNLS  676 (788)
Q Consensus       637 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~l~~N~l~  676 (788)
                      ++ +|+.+++++|.+....+..|..++ .++.+.+..+.+.
T Consensus       344 ~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          344 NT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             SS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             CC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            88 888888888887766666777774 6777877776544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.67  E-value=4.4e-16  Score=174.74  Aligned_cols=144  Identities=24%  Similarity=0.292  Sum_probs=74.0

Q ss_pred             CcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEecc
Q 003888          276 LISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLE  355 (788)
Q Consensus       276 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~  355 (788)
                      +..+.+..+.+....+  +..+++|+.|++++|.+. .++.  +..+++|+.|+|++|.+++..+  +..+++|+.|+|+
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls   95 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD   95 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred             HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence            4444455555543322  345666666666666665 4442  2246666666666666665443  4555666666666


Q ss_pred             CCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCC
Q 003888          356 GNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNIS  432 (788)
Q Consensus       356 ~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  432 (788)
                      +|.+.+ ++ .+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.
T Consensus        96 ~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~  166 (605)
T 1m9s_A           96 ENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  166 (605)
T ss_dssp             SSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred             CCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence            665553 22 355555555555555555432  2344445555555555554432  33444444444444444443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.66  E-value=3.7e-15  Score=158.77  Aligned_cols=247  Identities=14%  Similarity=0.199  Sum_probs=126.1

Q ss_pred             CCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCC
Q 003888          324 NLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMP  403 (788)
Q Consensus       324 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~  403 (788)
                      +|+.+.+..+ ++.+...+|.++ +|+.+.+.+ .++.+.+.+|.+|++|+.+++.+|.++......|. +.+|+.+.+.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp  211 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP  211 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence            3444444333 333334444432 345555443 33334444555555555555555555433333443 3555555555


Q ss_pred             CCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCC
Q 003888          404 ENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSI  483 (788)
Q Consensus       404 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  483 (788)
                      ++ +..+...+|.++++|+.+++..+ ++.+....|...+|+.+.+.++ + ..++..+|.+|++|+.+++.++.+..  
T Consensus       212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~~-i-~~I~~~aF~~c~~L~~l~l~~~~~~~--  285 (401)
T 4fdw_A          212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPNG-V-TNIASRAFYYCPELAEVTTYGSTFND--  285 (401)
T ss_dssp             TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEETT-C-CEECTTTTTTCTTCCEEEEESSCCCC--
T ss_pred             Cc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCCC-c-cEEChhHhhCCCCCCEEEeCCccccC--
Confidence            33 44444555556666666665543 2222222222222333333111 1 23344445555555555555544320  


Q ss_pred             CccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCccccccccccc
Q 003888          484 PNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMM  563 (788)
Q Consensus       484 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  563 (788)
                                       +.+..+.+.+|.++++|+.+++.+ .+..+...+|..+                         
T Consensus       286 -----------------~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c-------------------------  322 (401)
T 4fdw_A          286 -----------------DPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGN-------------------------  322 (401)
T ss_dssp             -----------------CTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTC-------------------------
T ss_pred             -----------------CcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCC-------------------------
Confidence                             001123344555555555555552 2443333444332                         


Q ss_pred             chhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCC-CCC
Q 003888          564 IPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLK-HIE  642 (788)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~  642 (788)
                                                 ++|+.++|..+ ++.+.+.+|.++ +|+.+++++|.+..+.+..|.+++ .++
T Consensus       323 ---------------------------~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~  373 (401)
T 4fdw_A          323 ---------------------------RKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDIT  373 (401)
T ss_dssp             ---------------------------CSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCC
T ss_pred             ---------------------------CCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCcc
Confidence                                       25555566433 455666788888 899999999888888788888884 788


Q ss_pred             EEECcCCccc
Q 003888          643 SLDLSYNKLN  652 (788)
Q Consensus       643 ~L~Ls~N~l~  652 (788)
                      .|++..+.+.
T Consensus       374 ~l~vp~~~~~  383 (401)
T 4fdw_A          374 VIRVPAESVE  383 (401)
T ss_dssp             EEEECGGGHH
T ss_pred             EEEeCHHHHH
Confidence            8888887654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.65  E-value=6.7e-16  Score=148.18  Aligned_cols=103  Identities=20%  Similarity=0.234  Sum_probs=51.0

Q ss_pred             CCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCC
Q 003888          324 NLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMP  403 (788)
Q Consensus       324 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~  403 (788)
                      +|++|++++|.++.+.  .+..+++|++|++++|.++  .+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        45 ~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           45 SLTYITLANINVTDLT--GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             TCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             CccEEeccCCCccChH--HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            4444444444443221  2334444455555544433  11234555555555555555554444455555555555555


Q ss_pred             CCcccCCccccccCCCCccEEEccCCc
Q 003888          404 ENHLEGPIPVGFCQLYSLQILDISDNN  430 (788)
Q Consensus       404 ~n~~~~~~~~~~~~l~~L~~L~l~~n~  430 (788)
                      +|.+.+..+..+..+++|++|++++|.
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~  147 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDLSYNG  147 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred             CCccCcHhHHHHhhCCCCCEEEccCCC
Confidence            555554445555555555555555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.63  E-value=1.8e-18  Score=192.89  Aligned_cols=77  Identities=23%  Similarity=0.187  Sum_probs=50.5

Q ss_pred             cccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccC-CccccCCCCCCEEECcCCcccccCCc---cccCCCCCCE
Q 003888          592 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLI-PSTFSNLKHIESLDLSYNKLNGKIPH---QLVELKTLAV  667 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~  667 (788)
                      +|+.|+|++|.+++ +| .++.+++|+.|+|++|+|++.. |..++.+++|+.|++++|++++.+|.   .+..+++|+.
T Consensus       487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~  564 (567)
T 1dce_A          487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS  564 (567)
T ss_dssp             TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred             CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence            56666666666654 45 6677777777777777777665 77777777777777777777755442   1233677777


Q ss_pred             EEc
Q 003888          668 FSV  670 (788)
Q Consensus       668 L~l  670 (788)
                      |++
T Consensus       565 L~l  567 (567)
T 1dce_A          565 ILT  567 (567)
T ss_dssp             EEC
T ss_pred             cCC
Confidence            653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.62  E-value=6.8e-16  Score=155.22  Aligned_cols=169  Identities=20%  Similarity=0.273  Sum_probs=112.8

Q ss_pred             CCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCC
Q 003888          324 NLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMP  403 (788)
Q Consensus       324 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~  403 (788)
                      ++..++++++.++++.  .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+  +..+++|++|+++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            4555566666666543  34456666677776666663 33 45666666666666666664333  5666666666666


Q ss_pred             CCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCC
Q 003888          404 ENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSI  483 (788)
Q Consensus       404 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  483 (788)
                      +|++.+..+  +.. ++|++|++++|.++                       + ++  .+..+++|+.|++++|++++. 
T Consensus        94 ~N~l~~l~~--~~~-~~L~~L~L~~N~l~-----------------------~-~~--~l~~l~~L~~L~Ls~N~i~~~-  143 (263)
T 1xeu_A           94 RNRLKNLNG--IPS-ACLSRLFLDNNELR-----------------------D-TD--SLIHLKNLEILSIRNNKLKSI-  143 (263)
T ss_dssp             SSCCSCCTT--CCC-SSCCEEECCSSCCS-----------------------B-SG--GGTTCTTCCEEECTTSCCCBC-
T ss_pred             CCccCCcCc--ccc-CcccEEEccCCccC-----------------------C-Ch--hhcCcccccEEECCCCcCCCC-
Confidence            666654321  122 55555555555554                       2 22  277888999999999998864 


Q ss_pred             CccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCC
Q 003888          484 PNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPI  531 (788)
Q Consensus       484 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~  531 (788)
                      + .+..+++|++|++++|++++.  ..+..+++|+.|++++|++....
T Consensus       144 ~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          144 V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence            3 678889999999999999866  67888999999999999887653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.60  E-value=2.4e-14  Score=153.49  Aligned_cols=317  Identities=12%  Similarity=0.086  Sum_probs=210.1

Q ss_pred             CCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCc
Q 003888          286 LDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQ  365 (788)
Q Consensus       286 ~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  365 (788)
                      ++.+...+|.++.+|+.+.+..+ ++ .|+...|.+|++|+.+++..+ ++.+....|.++.+|+.+.+..+ +......
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~  134 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE  134 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence            44556678999999999999754 66 888888888999999999755 77777788888999998877654 4435566


Q ss_pred             cccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCC-CCCc
Q 003888          366 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFH-PLSI  444 (788)
Q Consensus       366 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L  444 (788)
                      +|.++..++......  ........|.++++|+.+.+.++. ..+...+|.++.+|+.+++..+ ++.+....|. +..|
T Consensus       135 aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L  210 (394)
T 4fs7_A          135 AFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL  210 (394)
T ss_dssp             TTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred             eeecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence            777775443333222  222445678888999999987654 3356677888888888888765 3323333332 3444


Q ss_pred             cEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccC
Q 003888          445 EQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSN  524 (788)
Q Consensus       445 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  524 (788)
                      +.+.+..+..  .+... +..+.+|+.+.+.... +.....++.++..++.+.+..+... .....|..+..++.+....
T Consensus       211 ~~i~~~~~~~--~i~~~-~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~  285 (394)
T 4fs7_A          211 ENMEFPNSLY--YLGDF-ALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGS  285 (394)
T ss_dssp             CBCCCCTTCC--EECTT-TTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECS
T ss_pred             ceeecCCCce--Eeehh-hcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCc
Confidence            4444443322  11112 2233455555554332 2233345555666666666554333 4445555666666555544


Q ss_pred             CcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCccc
Q 003888          525 NNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI  604 (788)
Q Consensus       525 n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~  604 (788)
                      +.+.   ...|..                                                    ..+|+.+.+..+ +.
T Consensus       286 ~~i~---~~~F~~----------------------------------------------------~~~L~~i~l~~~-i~  309 (394)
T 4fs7_A          286 VIVP---EKTFYG----------------------------------------------------CSSLTEVKLLDS-VK  309 (394)
T ss_dssp             SEEC---TTTTTT----------------------------------------------------CTTCCEEEECTT-CC
T ss_pred             eeec---cccccc----------------------------------------------------cccccccccccc-cc
Confidence            3221   111211                                                    347888888765 66


Q ss_pred             ccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCC
Q 003888          605 GHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYN  673 (788)
Q Consensus       605 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N  673 (788)
                      .+...+|.++++|+.++|..+ ++.+...+|.++++|+.+++..+ ++.....+|.++++|+.+++..+
T Consensus       310 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          310 FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            677788999999999999754 88788899999999999999877 76677789999999999998754

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=3.6e-15  Score=139.10  Aligned_cols=86  Identities=23%  Similarity=0.257  Sum_probs=58.7

Q ss_pred             ccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCC-ccccCCCCCCEEECcCCcccccCC---ccccCCCCCC
Q 003888          591 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIP-STFSNLKHIESLDLSYNKLNGKIP---HQLVELKTLA  666 (788)
Q Consensus       591 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~  666 (788)
                      ++|+.|++++|.+++.+|..+..+++|+.|++++|++++..+ ..+..+++|++|++++|++++..+   ..+..+++|+
T Consensus        71 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~  150 (168)
T 2ell_A           71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT  150 (168)
T ss_dssp             SSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCC
T ss_pred             CCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCc
Confidence            356666666666665566666667777777777777776532 567777777777777777775444   3667777777


Q ss_pred             EEEccCCcCc
Q 003888          667 VFSVAYNNLS  676 (788)
Q Consensus       667 ~L~l~~N~l~  676 (788)
                      +|++++|++.
T Consensus       151 ~L~l~~n~~~  160 (168)
T 2ell_A          151 YLDGYDREDQ  160 (168)
T ss_dssp             EETTEETTSC
T ss_pred             EecCCCCChh
Confidence            7777777766

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.59  E-value=1e-14  Score=138.89  Aligned_cols=87  Identities=29%  Similarity=0.342  Sum_probs=53.4

Q ss_pred             cccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEcc
Q 003888          592 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVA  671 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  671 (788)
                      +|+.|+|++|.+++..+..|.++++|++|+|++|+|+++.+..|.++++|++|+|++|+++...+..|..+++|+.|+++
T Consensus        55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (193)
T 2wfh_A           55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG  134 (193)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence            44445555555554555556666666666666666666666666666666666666666665444556666666666666


Q ss_pred             CCcCccc
Q 003888          672 YNNLSGE  678 (788)
Q Consensus       672 ~N~l~~~  678 (788)
                      +|++.|.
T Consensus       135 ~N~~~C~  141 (193)
T 2wfh_A          135 ANPLYCD  141 (193)
T ss_dssp             SSCEECS
T ss_pred             CCCeecC
Confidence            6666653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=2.9e-15  Score=139.77  Aligned_cols=137  Identities=26%  Similarity=0.280  Sum_probs=111.7

Q ss_pred             CCCCcEEEccCCcCC-CCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCccccccc
Q 003888          466 CSSLVTLDLSYNRLN-GSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESS  544 (788)
Q Consensus       466 ~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~  544 (788)
                      .++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|+.|++++|++.+.+|..+..       
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------   93 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK-------   93 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-------
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-------
Confidence            377899999999887 56777788889999999999998865  67888999999999999887654433322       


Q ss_pred             CCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccC-cccccCcccCCeEeCC
Q 003888          545 NNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHI-PPQIGNLTRIQTLNLS  623 (788)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls  623 (788)
                                                                   +++|+.|++++|.+++.. +..+..+++|+.|+++
T Consensus        94 ---------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~  128 (168)
T 2ell_A           94 ---------------------------------------------LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF  128 (168)
T ss_dssp             ---------------------------------------------CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECC
T ss_pred             ---------------------------------------------CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEee
Confidence                                                         458999999999998643 2788999999999999


Q ss_pred             CCcCCccCC---ccccCCCCCCEEECcCCcccccCCc
Q 003888          624 HNNLTGLIP---STFSNLKHIESLDLSYNKLNGKIPH  657 (788)
Q Consensus       624 ~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~p~  657 (788)
                      +|.+++..+   ..+..+++|++|++++|.+. .+|.
T Consensus       129 ~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          129 NCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             SSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             CCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            999997765   58899999999999999987 4454

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.58  E-value=1.6e-14  Score=135.97  Aligned_cols=89  Identities=25%  Similarity=0.290  Sum_probs=61.5

Q ss_pred             cccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEcc
Q 003888          592 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVA  671 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  671 (788)
                      +|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  132 (177)
T 2o6r_A           53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  132 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence            55555555555555555556677777777777777777666667777777777777777775555556677777777777


Q ss_pred             CCcCcccCC
Q 003888          672 YNNLSGEIP  680 (788)
Q Consensus       672 ~N~l~~~~p  680 (788)
                      +|++.+.+|
T Consensus       133 ~N~~~~~~~  141 (177)
T 2o6r_A          133 TNPWDCSCP  141 (177)
T ss_dssp             SSCBCCCHH
T ss_pred             CCCeeccCc
Confidence            777776655

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.58  E-value=1.3e-14  Score=136.48  Aligned_cols=114  Identities=24%  Similarity=0.287  Sum_probs=105.5

Q ss_pred             ccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEc
Q 003888          591 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSV  670 (788)
Q Consensus       591 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  670 (788)
                      ++|+.|++++|++++..+..|+.+++|++|++++|+++++.+..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            47999999999999887778899999999999999999988888999999999999999999877778899999999999


Q ss_pred             cCCcCcccCCCcccccCCCCccccCCCCCCCCCC
Q 003888          671 AYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP  704 (788)
Q Consensus       671 ~~N~l~~~~p~~~~~~~~~~~~~~~gn~~~c~~~  704 (788)
                      ++|++++..+..+..+.++..+++.+|++.|+|+
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            9999998777767888999999999999999886

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.57  E-value=5.1e-15  Score=135.01  Aligned_cols=81  Identities=23%  Similarity=0.272  Sum_probs=57.3

Q ss_pred             ccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCcc-CCccccCCCCCCEEECcCCcccccCC---ccccCCCCCC
Q 003888          591 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGL-IPSTFSNLKHIESLDLSYNKLNGKIP---HQLVELKTLA  666 (788)
Q Consensus       591 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~  666 (788)
                      ++|+.|++++|.+++.+|..+..+++|++|++++|++++. .+..+..+++|++|++++|++++..+   ..+..+++|+
T Consensus        64 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~  143 (149)
T 2je0_A           64 NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT  143 (149)
T ss_dssp             TTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred             CCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence            3566666666666655666666777778888887777764 23667777888888888888776555   4677778888


Q ss_pred             EEEcc
Q 003888          667 VFSVA  671 (788)
Q Consensus       667 ~L~l~  671 (788)
                      .|+++
T Consensus       144 ~L~l~  148 (149)
T 2je0_A          144 YLDGY  148 (149)
T ss_dssp             EETTB
T ss_pred             cccCC
Confidence            77775

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.56  E-value=8.7e-17  Score=179.39  Aligned_cols=183  Identities=16%  Similarity=0.197  Sum_probs=128.3

Q ss_pred             CCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCc-------------CCCCCcccccCCCCCCEEE-cccCcCC
Q 003888          246 HSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNA-------------LDSSIPSSFGNMNFLQILD-LSNNQLT  311 (788)
Q Consensus       246 ~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~-------------~~~~~~~~~~~l~~L~~L~-l~~n~i~  311 (788)
                      ..++.|+.|++++|.++ .+|.++.. +++|++|++++|.             ..+..|..++++++|+.|+ ++.|.+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            34556666666666665 56666655 5566666665443             4455666777777788777 5655443


Q ss_pred             CccchHHHh-------cCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCC
Q 003888          312 GEIPEHLAV-------SCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLS  384 (788)
Q Consensus       312 ~~i~~~~~~-------~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~  384 (788)
                       .++.....       ....|+.|++++|.+++++ . +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.++
T Consensus       424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp-~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~  499 (567)
T 1dce_A          424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC-H-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE  499 (567)
T ss_dssp             -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCC-C-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             -hhhhhhhhcccccccCccCceEEEecCCCCCCCc-C-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence             33321110       1235888888888888753 3 778888888888888888 67778888888888888888887


Q ss_pred             CCCcccccCCCCCCEEeCCCCcccCCc-cccccCCCCccEEEccCCcCCCCCC
Q 003888          385 GKIPRWLGNLTGLKHIIMPENHLEGPI-PVGFCQLYSLQILDISDNNISGSLP  436 (788)
Q Consensus       385 ~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~  436 (788)
                      + +| .+..+++|+.|++++|.+++.. |..+..+++|+.|++++|.+++..+
T Consensus       500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            5 45 6788888888888888888765 7788888888888888888775543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=8.2e-15  Score=133.61  Aligned_cols=131  Identities=21%  Similarity=0.255  Sum_probs=111.6

Q ss_pred             CCCCCccEEEcccCCcccc-cchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhh
Q 003888           16 PHFKSLDHLDMVFARTALN-TSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCL   94 (788)
Q Consensus        16 ~~~~~L~~L~L~~~~~~~~-~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l   94 (788)
                      ...++|+.|++  ++|.++ +.++..+. .+++|++|++++|.+.    .+  ..++++++|++|++++|.+++.+|..+
T Consensus        14 ~~~~~l~~L~l--~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~----~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~   84 (149)
T 2je0_A           14 RTPSDVKELVL--DNSRSNEGKLEGLTD-EFEELEFLSTINVGLT----SI--ANLPKLNKLKKLELSDNRVSGGLEVLA   84 (149)
T ss_dssp             CCGGGCSEEEC--TTCBCBTTBCCSCCT-TCTTCCEEECTTSCCC----CC--TTCCCCTTCCEEECCSSCCCSCTHHHH
T ss_pred             CCCccCeEEEc--cCCcCChhHHHHHHh-hcCCCcEEECcCCCCC----Cc--hhhhcCCCCCEEECCCCcccchHHHHh
Confidence            45688999999  999998 67788778 9999999999999995    33  368999999999999999998788888


Q ss_pred             cCCCCCCEEECCCCcCcCcCCh-hhhcCCCCCCEEECcCccccccCC--ccccccCCCCcEEEcc
Q 003888           95 ANMTSLRILDVSSNQLTGSISS-SPLVHLTSIEELMLSNNHFQIPIS--LEPLFNHSRLKIFDAA  156 (788)
Q Consensus        95 ~~l~~L~~L~Ls~n~~~~~i~~-~~l~~l~~L~~L~Ls~n~l~~~~~--~~~l~~l~~L~~L~l~  156 (788)
                      .++++|++|++++|.++ .++. ..++.+++|++|++++|.+++..+  ...+..+++|++|+++
T Consensus        85 ~~l~~L~~L~ls~N~i~-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           85 EKCPNLTHLNLSGNKIK-DLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             HHCTTCCEEECTTSCCC-SHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             hhCCCCCEEECCCCcCC-ChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            89999999999999998 5541 378999999999999999985433  1468889999999875

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.53  E-value=2.5e-15  Score=173.16  Aligned_cols=143  Identities=29%  Similarity=0.331  Sum_probs=94.9

Q ss_pred             CCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCcccc
Q 003888          289 SIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLS  368 (788)
Q Consensus       289 ~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~  368 (788)
                      ..+..+..++.|+.|+|++|.+. .+|..++ .+++|++|+|++|.++. .+..+.++++|++|+|++|.++ .+|..+.
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~  290 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLT-SLPAELG  290 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCSC-CCGGGGGGTTCCEEECTTSCCS-SCCSSGG
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCcc-cChhhhCCCCCCEEeCcCCcCC-ccChhhc
Confidence            44566777778888888888777 7777666 57777777777777773 4566677777777777777777 5677777


Q ss_pred             CCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCC-CccEEEccCCcCCCCCC
Q 003888          369 KCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLY-SLQILDISDNNISGSLP  436 (788)
Q Consensus       369 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~  436 (788)
                      .+++|++|+|++|.++ .+|..|..+++|+.|+|++|.+.+..|..+..+. .+..+++++|.+++..|
T Consensus       291 ~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p  358 (727)
T 4b8c_D          291 SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP  358 (727)
T ss_dssp             GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred             CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence            7777777777777776 5566677777777777777777766666554331 11235666666665444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.53  E-value=1.4e-15  Score=175.15  Aligned_cols=164  Identities=23%  Similarity=0.180  Sum_probs=74.4

Q ss_pred             CCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEc
Q 003888          347 TNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDI  426 (788)
Q Consensus       347 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  426 (788)
                      +.++.|++.+|.+.. .+..     .++.++|+.+.+.+              +++..|.+. ..+..+..++.|+.|++
T Consensus       173 ~~~~~l~L~~n~~~~-~~~~-----~l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~L  231 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-ANQA-----LLQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALDL  231 (727)
T ss_dssp             ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred             CccceEEeeCCCCCc-chhh-----HhhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEEC
Confidence            556777777777663 2322     23444444444331              122233333 33445555666666666


Q ss_pred             cCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccc
Q 003888          427 SDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGE  506 (788)
Q Consensus       427 ~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  506 (788)
                      ++|.+....+..+.+.+|+.|++++|.+. .+|.. |..+++|+.|+|++|.++ .+|..+..+++|++|+|++|.++ .
T Consensus       232 s~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~  307 (727)
T 4b8c_D          232 SNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAE-IKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-T  307 (727)
T ss_dssp             TTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGG-GGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-C
T ss_pred             CCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChh-hhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-c
Confidence            66665543334444444555555555443 44443 667777778888877777 55777777777888888777776 5


Q ss_pred             cCcccCCCCCCCEEEccCCcCCCCCCCCC
Q 003888          507 VPVQLCELNQLQLLDLSNNNLHGPIPPCF  535 (788)
Q Consensus       507 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~  535 (788)
                      +|..|..+++|+.|+|++|++++.+|..+
T Consensus       308 lp~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          308 LPWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             CCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             cChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            56667777777777777777766555443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.53  E-value=6.6e-13  Score=142.29  Aligned_cols=321  Identities=12%  Similarity=0.143  Sum_probs=147.6

Q ss_pred             CcEEEcccCcCCCCCcccccCCCCCCEEEcccCc---CCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEE
Q 003888          276 LISFNISMNALDSSIPSSFGNMNFLQILDLSNNQ---LTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSL  352 (788)
Q Consensus       276 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~---i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  352 (788)
                      |+.+.+.. .++.+...+|.++.+|+.+.+..+.   ++ .|+...|.++.+|+.+.+..+ ++.+....|.++.+|+.+
T Consensus        66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i  142 (394)
T 4gt6_A           66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV  142 (394)
T ss_dssp             CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred             CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence            44444432 2333444445555555555554432   33 444455545555555544432 444444455555556665


Q ss_pred             eccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCC
Q 003888          353 QLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNIS  432 (788)
Q Consensus       353 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  432 (788)
                      .+..+. ..+...+|..+.+|+.+.+..+ +.......|.. ..|+.+.+..+... ....+|..+..++..........
T Consensus       143 ~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~  218 (394)
T 4gt6_A          143 TIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYP  218 (394)
T ss_dssp             ECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSC
T ss_pred             ccccee-eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccceecccccccc
Confidence            554332 2244445555666666665543 22233334433 45666665543322 34455566666665555443322


Q ss_pred             CCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccC
Q 003888          433 GSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLC  512 (788)
Q Consensus       433 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  512 (788)
                      ......+.......           .....+.....+..+.+... ++.....+|.++.+|+.+.+.++... +...+|.
T Consensus       219 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~  285 (394)
T 4gt6_A          219 AIDNVLYEKSANGD-----------YALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVS-IGTGAFM  285 (394)
T ss_dssp             BSSSCEEEECTTSC-----------EEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTT
T ss_pred             cccceeeccccccc-----------ccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccce-ecCcccc
Confidence            11111110000000           00000111122333333221 22233344555555666655544332 4445555


Q ss_pred             CCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeeccccccc
Q 003888          513 ELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSL  592 (788)
Q Consensus       513 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  592 (788)
                      ++++|+.+.+.. .+..+...+|..+                                                    .+
T Consensus       286 ~c~~L~~i~l~~-~i~~I~~~aF~~c----------------------------------------------------~~  312 (394)
T 4gt6_A          286 NCPALQDIEFSS-RITELPESVFAGC----------------------------------------------------IS  312 (394)
T ss_dssp             TCTTCCEEECCT-TCCEECTTTTTTC----------------------------------------------------TT
T ss_pred             cccccccccCCC-cccccCceeecCC----------------------------------------------------CC
Confidence            666666666542 2333333333332                                                    25


Q ss_pred             ccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccC
Q 003888          593 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAY  672 (788)
Q Consensus       593 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~  672 (788)
                      |+.+++..+ ++.+...+|.++.+|+++.+..+ ++.+...+|.++++|+.+++.++....   ..+....+|+.+.+..
T Consensus       313 L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~  387 (394)
T 4gt6_A          313 LKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAP  387 (394)
T ss_dssp             CCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-------
T ss_pred             cCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCC
Confidence            555555443 44455566777777777777543 665666777777777777777765431   3455666677666655


Q ss_pred             Cc
Q 003888          673 NN  674 (788)
Q Consensus       673 N~  674 (788)
                      |.
T Consensus       388 ~~  389 (394)
T 4gt6_A          388 GS  389 (394)
T ss_dssp             --
T ss_pred             CC
Confidence            43

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.50  E-value=7.3e-14  Score=130.04  Aligned_cols=110  Identities=25%  Similarity=0.272  Sum_probs=82.3

Q ss_pred             cccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEcc
Q 003888          592 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVA  671 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  671 (788)
                      ..+.+++++|.++ .+|..+.  ++|+.|+|++|+|+++.|..|.++++|++|+|++|+|++..+..|..+++|++|+++
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            3567778887777 3555543  677788888888887777777778888888888888876666667777888888888


Q ss_pred             CCcCcccCCCcccccCCCCccccCCCCCCCCCC
Q 003888          672 YNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP  704 (788)
Q Consensus       672 ~N~l~~~~p~~~~~~~~~~~~~~~gn~~~c~~~  704 (788)
                      +|++++..+..+..+.++..+++.+|++.|+|+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            888877666667777777778888888888775

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.49  E-value=3.2e-12  Score=136.90  Aligned_cols=327  Identities=9%  Similarity=0.083  Sum_probs=164.7

Q ss_pred             CCCEEEcCCCcccccCccCcCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEc
Q 003888          226 KLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDL  305 (788)
Q Consensus       226 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l  305 (788)
                      .|+.+.+..+ ++.....+|.++.+|+.+.+..+.-                      ..++.+...+|.++.+|+.+.+
T Consensus        65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p----------------------~~l~~Ig~~aF~~c~~L~~i~~  121 (394)
T 4gt6_A           65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKP----------------------SCVKKIGRQAFMFCSELTDIPI  121 (394)
T ss_dssp             CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCC----------------------CCCCEECTTTTTTCTTCCBCGG
T ss_pred             cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCC----------------------CeeeEechhhchhcccceeecc
Confidence            3565555432 4444445555555555555554320                      0122233334444555554444


Q ss_pred             ccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCC
Q 003888          306 SNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSG  385 (788)
Q Consensus       306 ~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~  385 (788)
                      ..+ ++ .++...+..+.+|+.+.+.. .+..+....|..+.+|+.+.+.++ ++.+...+|.. .+|+.+.+..+-. .
T Consensus       122 ~~~-~~-~I~~~aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~  195 (394)
T 4gt6_A          122 LDS-VT-EIDSEAFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-R  195 (394)
T ss_dssp             GTT-CS-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-E
T ss_pred             CCc-cc-eehhhhhhhhcccccccccc-eeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-c
Confidence            333 22 44444444455555555542 233334444555555555555443 22233333432 3455555544322 1


Q ss_pred             CCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccC
Q 003888          386 KIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFH  465 (788)
Q Consensus       386 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  465 (788)
                      .....|..+..++................+........-.....          ....+..+.+... + ..+...+|.+
T Consensus       196 i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ip~~-v-~~i~~~aF~~  263 (394)
T 4gt6_A          196 IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYP----------SQREDPAFKIPNG-V-ARIETHAFDS  263 (394)
T ss_dssp             ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECC----------TTCCCSEEECCTT-E-EEECTTTTTT
T ss_pred             cccchhhhccccceecccccccccccceeecccccccccccccc----------cccccceEEcCCc-c-eEcccceeee
Confidence            33344555555555554443322111111111111010000000          0011122222111 1 2344556888


Q ss_pred             CCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccC
Q 003888          466 CSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSN  545 (788)
Q Consensus       466 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~  545 (788)
                      |..|+.+.+.++... ....+|.++++|+.+.+. +.++.+...+|.++.+|+.+++.++ ++.+...+|..+       
T Consensus       264 c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C-------  333 (394)
T 4gt6_A          264 CAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC-------  333 (394)
T ss_dssp             CSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC-------
T ss_pred             cccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC-------
Confidence            888888888765443 556677888888888885 4555566778888888888888754 544445555553       


Q ss_pred             CCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCC
Q 003888          546 NSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHN  625 (788)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N  625 (788)
                                                                   .+|+.+.+..+ ++.+...+|.++++|+.+++.++
T Consensus       334 ---------------------------------------------~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          334 ---------------------------------------------EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             ---------------------------------------------TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             ---------------------------------------------CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence                                                         37888888654 66677788999999999999988


Q ss_pred             cCCccCCccccCCCCCCEEECcCCccc
Q 003888          626 NLTGLIPSTFSNLKHIESLDLSYNKLN  652 (788)
Q Consensus       626 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~  652 (788)
                      ....   ..+....+|+.+.+..|.+.
T Consensus       368 ~~~~---~~~~~~~~L~~i~i~~~~~~  391 (394)
T 4gt6_A          368 RSQW---NAISTDSGLQNLPVAPGSID  391 (394)
T ss_dssp             HHHH---HTCBCCCCC-----------
T ss_pred             eeeh---hhhhccCCCCEEEeCCCCEE
Confidence            6542   46777888999988777653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=9e-14  Score=130.55  Aligned_cols=84  Identities=19%  Similarity=0.185  Sum_probs=57.0

Q ss_pred             cccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCC-ccccCCCCCCEEECcCCcccccCCcc----ccCCCCCC
Q 003888          592 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIP-STFSNLKHIESLDLSYNKLNGKIPHQ----LVELKTLA  666 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~  666 (788)
                      +|+.|++++|.+++..+..+..+++|++|++++|+++...+ ..+..+++|++|++++|+++ .+|..    +..+++|+
T Consensus        65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~  143 (176)
T 1a9n_A           65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVR  143 (176)
T ss_dssp             SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCS
T ss_pred             CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccc
Confidence            55556666666654444455777777777777777765432 26777778888888888876 44543    77788888


Q ss_pred             EEEccCCcCc
Q 003888          667 VFSVAYNNLS  676 (788)
Q Consensus       667 ~L~l~~N~l~  676 (788)
                      .||+++|...
T Consensus       144 ~Ld~~~n~~~  153 (176)
T 1a9n_A          144 VLDFQKVKLK  153 (176)
T ss_dssp             EETTEECCHH
T ss_pred             eeCCCcCCHH
Confidence            8888887765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.46  E-value=2.3e-13  Score=127.10  Aligned_cols=108  Identities=21%  Similarity=0.253  Sum_probs=72.3

Q ss_pred             cEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCC
Q 003888          594 SGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYN  673 (788)
Q Consensus       594 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N  673 (788)
                      +.+++++|.++ .+|..+.  ++|+.|+|++|+|+++.|..|.++++|++|+|++|+|++..+..|..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            45677777765 4555443  66777777777777666667777777777777777776555555666777777777777


Q ss_pred             cCcccCCCcccccCCCCccccCCCCCCCCCC
Q 003888          674 NLSGEIPEWTAQFATFNESSYEGNTFLCGLP  704 (788)
Q Consensus       674 ~l~~~~p~~~~~~~~~~~~~~~gn~~~c~~~  704 (788)
                      ++++..+..+..+.++..+++.+|++.|+|+
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            7776555556666677777777777777664

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.45  E-value=1e-13  Score=130.21  Aligned_cols=135  Identities=20%  Similarity=0.183  Sum_probs=107.6

Q ss_pred             ccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCccccc
Q 003888          463 FFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE  542 (788)
Q Consensus       463 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  542 (788)
                      +..+++|+.|++++|+++. ++......++|++|++++|.+++.  ..+..+++|++|++++|++.+..+..+..     
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-----   86 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA-----   86 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH-----
T ss_pred             cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhc-----
Confidence            6678899999999999985 454333345999999999999865  57889999999999999987544333232     


Q ss_pred             ccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcc--cccCcccCCeE
Q 003888          543 SSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPP--QIGNLTRIQTL  620 (788)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L  620 (788)
                                                                     +++|+.|++++|.+. .+|.  .+..+++|+.|
T Consensus        87 -----------------------------------------------l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L  118 (176)
T 1a9n_A           87 -----------------------------------------------LPDLTELILTNNSLV-ELGDLDPLASLKSLTYL  118 (176)
T ss_dssp             -----------------------------------------------CTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEE
T ss_pred             -----------------------------------------------CCCCCEEECCCCcCC-cchhhHhhhcCCCCCEE
Confidence                                                           458999999999997 4554  78899999999


Q ss_pred             eCCCCcCCccCCc---cccCCCCCCEEECcCCcccc
Q 003888          621 NLSHNNLTGLIPS---TFSNLKHIESLDLSYNKLNG  653 (788)
Q Consensus       621 ~Ls~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~  653 (788)
                      ++++|.++...+.   .+..+++|+.||+++|.+..
T Consensus       119 ~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          119 CILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             ECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             EecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            9999999865332   48899999999999998764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.44  E-value=4.8e-13  Score=124.50  Aligned_cols=90  Identities=24%  Similarity=0.263  Sum_probs=84.7

Q ss_pred             ccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEc
Q 003888          591 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSV  670 (788)
Q Consensus       591 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  670 (788)
                      +.|+.|+|++|.+++..|..|..+++|++|+|++|+|+++.+..|.++++|++|+|++|++++..+..|..+++|++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            37999999999999998999999999999999999999998889999999999999999999877778999999999999


Q ss_pred             cCCcCcccCC
Q 003888          671 AYNNLSGEIP  680 (788)
Q Consensus       671 ~~N~l~~~~p  680 (788)
                      ++|++++..+
T Consensus       110 ~~N~~~c~c~  119 (170)
T 3g39_A          110 LNNPWDCACS  119 (170)
T ss_dssp             CSSCBCTTBG
T ss_pred             CCCCCCCCch
Confidence            9999998765

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.42  E-value=1.1e-15  Score=146.68  Aligned_cols=155  Identities=24%  Similarity=0.296  Sum_probs=117.6

Q ss_pred             cCCCCCcEEEccCCcCCCCCCc------cccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcC
Q 003888          464 FHCSSLVTLDLSYNRLNGSIPN------WVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDN  537 (788)
Q Consensus       464 ~~~~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~  537 (788)
                      ...+.++.++++.+.+.+..|.      .+..+++|++|++++|.+++ +| .+..+++|+.|++++|++.. +|..+..
T Consensus        15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~   91 (198)
T 1ds9_A           15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAV   91 (198)
T ss_dssp             HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHH
T ss_pred             HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhc
Confidence            3445666666666666665554      78888899999999999886 45 78888999999999998863 2322111


Q ss_pred             cccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccC
Q 003888          538 TTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRI  617 (788)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L  617 (788)
                                                                          +++|+.|++++|++++ +| .+..+++|
T Consensus        92 ----------------------------------------------------~~~L~~L~L~~N~l~~-l~-~~~~l~~L  117 (198)
T 1ds9_A           92 ----------------------------------------------------ADTLEELWISYNQIAS-LS-GIEKLVNL  117 (198)
T ss_dssp             ----------------------------------------------------HHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred             ----------------------------------------------------CCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence                                                                3578999999999886 34 68889999


Q ss_pred             CeEeCCCCcCCccCC-ccccCCCCCCEEECcCCcccccCCcc----------ccCCCCCCEEEccCCcCcc
Q 003888          618 QTLNLSHNNLTGLIP-STFSNLKHIESLDLSYNKLNGKIPHQ----------LVELKTLAVFSVAYNNLSG  677 (788)
Q Consensus       618 ~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~l~~N~l~~  677 (788)
                      +.|++++|++++..+ ..+..+++|++|++++|++.+.+|..          +..+++|+.||  +|+++.
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            999999999987543 56888999999999999998776643          77888999887  676663

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.39  E-value=1.5e-12  Score=121.43  Aligned_cols=90  Identities=24%  Similarity=0.272  Sum_probs=83.6

Q ss_pred             ccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEc
Q 003888          591 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSV  670 (788)
Q Consensus       591 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  670 (788)
                      +.|+.|+|++|++++..|..|.++++|+.|+|++|+|+++.+..|.++++|++|+|++|+|++..+..|..+++|+.|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            37999999999999998999999999999999999999988888999999999999999999776667999999999999


Q ss_pred             cCCcCcccCC
Q 003888          671 AYNNLSGEIP  680 (788)
Q Consensus       671 ~~N~l~~~~p  680 (788)
                      ++|++.+..+
T Consensus       113 ~~N~~~c~~~  122 (174)
T 2r9u_A          113 YNNPWDCECR  122 (174)
T ss_dssp             CSSCBCTTBG
T ss_pred             CCCCcccccc
Confidence            9999997654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.31  E-value=8.9e-15  Score=140.41  Aligned_cols=153  Identities=22%  Similarity=0.246  Sum_probs=121.8

Q ss_pred             ccCCCCCCEEEccCCcCccccCc------ccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccc
Q 003888          487 VDGLSQLSHLILGHNNLEGEVPV------QLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMD  560 (788)
Q Consensus       487 ~~~l~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (788)
                      +.....++.++++++.+.+..|.      .+..+++|++|++++|++.+ +| .+..                       
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~-----------------------   68 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG-----------------------   68 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH-----------------------
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc-----------------------
Confidence            34456777777777777766665      88999999999999999986 33 3332                       


Q ss_pred             cccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCC
Q 003888          561 SMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKH  640 (788)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  640 (788)
                                                   +++|+.|++++|.++ .+|..+..+++|++|++++|+++++ | .+..+++
T Consensus        69 -----------------------------l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~  116 (198)
T 1ds9_A           69 -----------------------------MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLVN  116 (198)
T ss_dssp             -----------------------------HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHH
T ss_pred             -----------------------------CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCCC
Confidence                                         458999999999998 6788888889999999999999985 3 6888999


Q ss_pred             CCEEECcCCcccccCC-ccccCCCCCCEEEccCCcCcccCCCc----------ccccCCCCccccCCCC
Q 003888          641 IESLDLSYNKLNGKIP-HQLVELKTLAVFSVAYNNLSGEIPEW----------TAQFATFNESSYEGNT  698 (788)
Q Consensus       641 L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~l~~N~l~~~~p~~----------~~~~~~~~~~~~~gn~  698 (788)
                      |++|++++|++++..+ ..+..+++|++|++++|++++.+|..          +..++.+..++  ||+
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~  183 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMP  183 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGG
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Ccc
Confidence            9999999999985433 47889999999999999999887652          44555555543  554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.29  E-value=5.6e-12  Score=132.77  Aligned_cols=106  Identities=15%  Similarity=0.208  Sum_probs=58.4

Q ss_pred             EECCCC-cccccCcccccCcccCCeEeCCC-CcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCC
Q 003888          596 LDLSCN-KLIGHIPPQIGNLTRIQTLNLSH-NNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYN  673 (788)
Q Consensus       596 L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N  673 (788)
                      ++++++ +++ .+|. +..+++|++|+|++ |+|+++.+..|.++++|++|+|++|+|++..|..|..+++|+.|+|++|
T Consensus        13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            455555 554 3444 55555556666654 5555555555555556666666666555555555555555666666666


Q ss_pred             cCcccCCCcccccCCCCccccCCCCCCCCCC
Q 003888          674 NLSGEIPEWTAQFATFNESSYEGNTFLCGLP  704 (788)
Q Consensus       674 ~l~~~~p~~~~~~~~~~~~~~~gn~~~c~~~  704 (788)
                      +|++..+..+..+. +..+++.+|++.|+|+
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLHCSCA  120 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence            55544444333332 5555555565555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.28  E-value=4.8e-10  Score=119.41  Aligned_cols=144  Identities=11%  Similarity=0.095  Sum_probs=83.4

Q ss_pred             ccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCccccc
Q 003888          463 FFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE  542 (788)
Q Consensus       463 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  542 (788)
                      +..+.+|+.+.+..+ +......++.++.+|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +......+|..     
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~-----  284 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSG-----  284 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTT-----
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccc-----
Confidence            455556666665543 22234445556666666666554 44455556666666666666443 33222333333     


Q ss_pred             ccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeC
Q 003888          543 SSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL  622 (788)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  622 (788)
                                                                     +++|+.+++.++.++.+...+|.++.+|+.++|
T Consensus       285 -----------------------------------------------c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l  317 (379)
T 4h09_A          285 -----------------------------------------------CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL  317 (379)
T ss_dssp             -----------------------------------------------CTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred             -----------------------------------------------ccccccccccccccceehhhhhcCCCCCCEEEc
Confidence                                                           235666666666666566667777777777777


Q ss_pred             CCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCC
Q 003888          623 SHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK  663 (788)
Q Consensus       623 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  663 (788)
                      ..+ ++.+...+|.++++|+++.+..+ ++..-..+|.+.+
T Consensus       318 p~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          318 PTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             CTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             Ccc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            643 66666677777777777777554 4444445555543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.27  E-value=7.9e-12  Score=131.60  Aligned_cols=114  Identities=17%  Similarity=0.220  Sum_probs=94.7

Q ss_pred             cccccEEECCC-CcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEE
Q 003888          590 LSLLSGLDLSC-NKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVF  668 (788)
Q Consensus       590 l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  668 (788)
                      +++|+.|+|++ |.+.+..+..|.++++|+.|+|++|+|+++.|..|.++++|++|+|++|+|++..+..+..++ |+.|
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l  108 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL  108 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred             CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence            34899999996 999998889999999999999999999999999999999999999999999977666776666 9999


Q ss_pred             EccCCcCcccCC-CcccccCCCCccccCCCCCCCCCC
Q 003888          669 SVAYNNLSGEIP-EWTAQFATFNESSYEGNTFLCGLP  704 (788)
Q Consensus       669 ~l~~N~l~~~~p-~~~~~~~~~~~~~~~gn~~~c~~~  704 (788)
                      ++++|++.+... .|+..+.......+..+.+.|..+
T Consensus       109 ~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~  145 (347)
T 2ifg_A          109 VLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQ  145 (347)
T ss_dssp             ECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred             EeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCC
Confidence            999999997654 334444444444556677778654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.25  E-value=4.9e-10  Score=119.36  Aligned_cols=154  Identities=10%  Similarity=0.071  Sum_probs=93.9

Q ss_pred             ccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCccccc
Q 003888          463 FFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE  542 (788)
Q Consensus       463 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  542 (788)
                      +..+..+..+.+...... .....+..+.+|+.+.+..+ +......+|.++..|+.+.+..+ ++.+...+|..+    
T Consensus       190 ~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~----  262 (379)
T 4h09_A          190 YPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNC----  262 (379)
T ss_dssp             CCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTC----
T ss_pred             ccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcccccee----
Confidence            334445555555443222 33445566677777777554 33355566777777777777654 433333344332    


Q ss_pred             ccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeC
Q 003888          543 SSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL  622 (788)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  622 (788)
                                                                      ..|+.+++..+ +..+....|.++++|+.+.+
T Consensus       263 ------------------------------------------------~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l  293 (379)
T 4h09_A          263 ------------------------------------------------TALKTLNFYAK-VKTVPYLLCSGCSNLTKVVM  293 (379)
T ss_dssp             ------------------------------------------------TTCCEEEECCC-CSEECTTTTTTCTTCCEEEE
T ss_pred             ------------------------------------------------ehhcccccccc-ceeccccccccccccccccc
Confidence                                                            25666666543 44455566777777777777


Q ss_pred             CCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCC
Q 003888          623 SHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYN  673 (788)
Q Consensus       623 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N  673 (788)
                      .++.++.+...+|.++++|+.+++..+ ++..-..+|.++++|+.+.+..+
T Consensus       294 ~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          294 DNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             CCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             cccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            777777777777777777777777654 55455567777777777766543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.15  E-value=1.3e-12  Score=137.65  Aligned_cols=161  Identities=19%  Similarity=0.138  Sum_probs=79.3

Q ss_pred             CCCCCEEEcCCCcccccCccC----cC-CCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccc----
Q 003888          224 NTKLRQLYLVNDSLTGPFRLP----IH-SHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSF----  294 (788)
Q Consensus       224 l~~L~~L~L~~~~l~~~~~~~----l~-~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~----  294 (788)
                      .+.|++|++++|.++......    +. ..++|++|++++|.+++.....+...+++|++|++++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            345666666666655422221    11 225677777777766544344444445567777777776654333332    


Q ss_pred             -cCCCCCCEEEcccCcCCCccchHHH---hcCCCCCEEEccCccCCCcC----cccCcCCCCCCEEeccCCcCCCc----
Q 003888          295 -GNMNFLQILDLSNNQLTGEIPEHLA---VSCVNLEFLALSNNNLKGHM----FSRNFNLTNLRSLQLEGNHLEGE----  362 (788)
Q Consensus       295 -~~l~~L~~L~l~~n~i~~~i~~~~~---~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~~~----  362 (788)
                       ...++|++|++++|.+++.....+.   ..+++|++|++++|.++...    ...+...++|++|++++|.++..    
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             2345666777766666521111111   23555666666666554322    12233344555555555555432    


Q ss_pred             CCccccCCCCCCEEEccCCcCC
Q 003888          363 IPQSLSKCSSLEGLYLNNNSLS  384 (788)
Q Consensus       363 ~~~~l~~l~~L~~L~L~~n~i~  384 (788)
                      +...+..+++|++|++++|.++
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHhCCCCCEEeccCCCCC
Confidence            1122233444555555555444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.13  E-value=2.5e-12  Score=135.51  Aligned_cols=159  Identities=18%  Similarity=0.145  Sum_probs=88.0

Q ss_pred             CCCcEEEcccCcCCCCCccccc-----CCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccC-----
Q 003888          274 PSLISFNISMNALDSSIPSSFG-----NMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRN-----  343 (788)
Q Consensus       274 ~~L~~L~L~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-----  343 (788)
                      +.|++|++++|.++......+.     ..++|++|++++|.+++.....+...+++|++|++++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            4556666666655533222221     124666666666666533333333334566666666666654333332     


Q ss_pred             cCCCCCCEEeccCCcCCCc----CCccccCCCCCCEEEccCCcCCCCC----cccccCCCCCCEEeCCCCcccCCc----
Q 003888          344 FNLTNLRSLQLEGNHLEGE----IPQSLSKCSSLEGLYLNNNSLSGKI----PRWLGNLTGLKHIIMPENHLEGPI----  411 (788)
Q Consensus       344 ~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~l~~n~~~~~~----  411 (788)
                      ...++|++|++++|.++..    ++..+..+++|++|+|++|.+++..    +..+...++|++|++++|.++...    
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            1345677777777766532    2333455667777777777765322    334555667777777777766432    


Q ss_pred             cccccCCCCccEEEccCCcCC
Q 003888          412 PVGFCQLYSLQILDISDNNIS  432 (788)
Q Consensus       412 ~~~~~~l~~L~~L~l~~n~~~  432 (788)
                      ...+...++|++|++++|.+.
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHhCCCCCEEeccCCCCC
Confidence            233444567777777777665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.74  E-value=3.8e-09  Score=110.16  Aligned_cols=162  Identities=17%  Similarity=0.149  Sum_probs=96.5

Q ss_pred             ccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccC--CCCCCCEEEccCC--cCCCCCCCCCcCc
Q 003888          463 FFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLC--ELNQLQLLDLSNN--NLHGPIPPCFDNT  538 (788)
Q Consensus       463 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~n--~i~~~~~~~~~~~  538 (788)
                      +..+|+|+.|++++|.-. ..+. +. +++|++|++..|.+.......+.  .+|+|+.|+|+.+  ...+..  .+...
T Consensus       168 l~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~~~l  242 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--DMNVF  242 (362)
T ss_dssp             HHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--CGGGT
T ss_pred             HhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--hHHHH
Confidence            456678888888777311 1222 33 67888888888877644333333  6788888888532  111100  00000


Q ss_pred             ccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCccccc---Ccc
Q 003888          539 TLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIG---NLT  615 (788)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~---~l~  615 (788)
                                                                 ........+++|+.|+|++|.+.+..+..+.   .++
T Consensus       243 -------------------------------------------~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~  279 (362)
T 2ra8_A          243 -------------------------------------------RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILP  279 (362)
T ss_dssp             -------------------------------------------GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGG
T ss_pred             -------------------------------------------HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCC
Confidence                                                       0000111256888888888887654333332   578


Q ss_pred             cCCeEeCCCCcCCcc----CCccccCCCCCCEEECcCCcccccCCccccC-CCCCCEEEccCCc
Q 003888          616 RIQTLNLSHNNLTGL----IPSTFSNLKHIESLDLSYNKLNGKIPHQLVE-LKTLAVFSVAYNN  674 (788)
Q Consensus       616 ~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~l~~N~  674 (788)
                      +|++|+|+.|.+++.    ++..+..+++|+.|++++|.|+...-..+.. +  ...+++++++
T Consensus       280 ~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             GCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            888888888888764    2334456788888888888877544333433 2  3557777765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.65  E-value=1.4e-08  Score=105.82  Aligned_cols=42  Identities=14%  Similarity=0.127  Sum_probs=21.8

Q ss_pred             CCCCCCEEEcCCCcCCCCCchhHhh--cCCCCCEEEcCCCcccc
Q 003888          198 HQHDLEDVRLSHVNMDGEFPNWLLE--NNTKLRQLYLVNDSLTG  239 (788)
Q Consensus       198 ~~~~L~~L~l~~~~~~~~~~~~~~~--~l~~L~~L~L~~~~l~~  239 (788)
                      .+++|+.|++.+|.+.+..+..++.  .+++|++|+|+.|.+++
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            3566777777666655433333321  24455555555555443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.63  E-value=6.4e-09  Score=97.78  Aligned_cols=123  Identities=18%  Similarity=0.187  Sum_probs=79.5

Q ss_pred             hHHHhhcCCCCcEEeCCCC-CCCCCCCCCCcccccCCCCCCEEEcCCCCCCcC----CChhhcCCCCCCEEECCCCcCcC
Q 003888           38 LQIIRESMPSLKYLSMSDS-TLGTNSSRILDQGLCSLMHLQELYIDNNDLRGS----LPWCLANMTSLRILDVSSNQLTG  112 (788)
Q Consensus        38 ~~~l~~~l~~L~~L~Ls~~-~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~~~~  112 (788)
                      ...+. ..++|++|+|++| .++..+.......+...++|++|+|++|.+.+.    +..++...++|++|+|++|.|.+
T Consensus        29 ~~~l~-~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           29 KRIQN-NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHT-TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHh-cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            34455 6778888888887 774222222233556677888888888887653    34455666788888888888762


Q ss_pred             c----CChhhhcCCCCCCEEEC--cCccccccC---CccccccCCCCcEEEccCccccc
Q 003888          113 S----ISSSPLVHLTSIEELML--SNNHFQIPI---SLEPLFNHSRLKIFDAANNEIKA  162 (788)
Q Consensus       113 ~----i~~~~l~~l~~L~~L~L--s~n~l~~~~---~~~~l~~l~~L~~L~l~~n~~~~  162 (788)
                      .    +.. .+...++|++|++  ++|.+....   -...+...++|++|++++|.+..
T Consensus       108 ~g~~~l~~-~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          108 SGILALVE-ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHHHHH-GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHH-HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence            2    233 5666778888888  777765321   11345566788888888887653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.59  E-value=7.8e-09  Score=97.17  Aligned_cols=119  Identities=18%  Similarity=0.147  Sum_probs=90.7

Q ss_pred             CCCCCCCccEEEcccCCc-ccccc----hhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCc
Q 003888           14 GFPHFKSLDHLDMVFART-ALNTS----FLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRG   88 (788)
Q Consensus        14 ~l~~~~~L~~L~L~~~~~-~~~~~----~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~   88 (788)
                      .+.+.++|++|+|  ++| .+...    +...+. ..++|++|+|++|.+++.+.....+.+...++|++|+|++|.+.+
T Consensus        31 ~l~~~~~L~~L~L--~~n~~i~~~g~~~l~~~L~-~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           31 IQNNDPDLEEVNL--NNIMNIPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHTTCTTCCEEEC--TTCTTCCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHhcCCCCCEEEe--cCCCCCCHHHHHHHHHHHH-hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            3567889999999  998 88754    345566 678999999999998532222223456667899999999999986


Q ss_pred             C----CChhhcCCCCCCEEEC--CCCcCcCc----CChhhhcCCCCCCEEECcCcccc
Q 003888           89 S----LPWCLANMTSLRILDV--SSNQLTGS----ISSSPLVHLTSIEELMLSNNHFQ  136 (788)
Q Consensus        89 ~----~~~~l~~l~~L~~L~L--s~n~~~~~----i~~~~l~~l~~L~~L~Ls~n~l~  136 (788)
                      .    +..++...++|++|+|  ++|.+...    +.. .+...++|++|++++|.+.
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCCCC
Confidence            4    4667788899999999  88988732    333 5667789999999999875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.36  E-value=1.7e-07  Score=92.39  Aligned_cols=66  Identities=21%  Similarity=0.282  Sum_probs=30.7

Q ss_pred             cCCCCcEEeCCCCCCCCCCC--CCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCC--CCCEEECCCCcCcCcCC
Q 003888           44 SMPSLKYLSMSDSTLGTNSS--RILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMT--SLRILDVSSNQLTGSIS  115 (788)
Q Consensus        44 ~l~~L~~L~Ls~~~l~~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~--~L~~L~Ls~n~~~~~i~  115 (788)
                      .+++|++|+|++|.+.   +  .++. .+..+++|++|+|++|++++.  ..+..++  +|++|+|++|.+.+.+|
T Consensus       168 ~l~~L~~L~Ls~N~l~---~l~~l~~-~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLY---RLDDMSS-IVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCC---CCGGGTT-HHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCC---CCccchh-HHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            4555555555555553   1  1111 334455555555555555533  2222222  55555555555544333

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.22  E-value=9.1e-07  Score=87.11  Aligned_cols=67  Identities=28%  Similarity=0.391  Sum_probs=36.8

Q ss_pred             cCcccCCeEeCCCCcCCcc--CCccccCCCCCCEEECcCCcccccCCccccCCC--CCCEEEccCCcCcccCC
Q 003888          612 GNLTRIQTLNLSHNNLTGL--IPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK--TLAVFSVAYNNLSGEIP  680 (788)
Q Consensus       612 ~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~l~~N~l~~~~p  680 (788)
                      .++++|++|+|++|+|+++  +|..++.+++|+.|+|++|+|++.  ..+..+.  +|++|++++|++++.+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            3455666666666666653  234444566666666666666543  2233333  66666666666665444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.04  E-value=1.6e-06  Score=78.87  Aligned_cols=83  Identities=16%  Similarity=0.178  Sum_probs=43.2

Q ss_pred             CCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCC-CCcCCChhhcCC----CCCCEEECCCCc-CcCcCChhhhc
Q 003888           47 SLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNND-LRGSLPWCLANM----TSLRILDVSSNQ-LTGSISSSPLV  120 (788)
Q Consensus        47 ~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l----~~L~~L~Ls~n~-~~~~i~~~~l~  120 (788)
                      .|++||+++|.+++    ..-..+..+++|++|+|++|. +++..-..++.+    ++|++|+|++|. ++ .-.-..+.
T Consensus        62 ~L~~LDLs~~~Itd----~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT-D~Gl~~L~  136 (176)
T 3e4g_A           62 KIQAIDATDSCIMS----IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT-DKGIIALH  136 (176)
T ss_dssp             CEEEEEEESCCCCG----GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC-HHHHHHGG
T ss_pred             eEeEEeCcCCCccH----HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC-HHHHHHHh
Confidence            46666666665531    111234556666666666664 554433444443    356666666653 44 21112355


Q ss_pred             CCCCCCEEECcCcc
Q 003888          121 HLTSIEELMLSNNH  134 (788)
Q Consensus       121 ~l~~L~~L~Ls~n~  134 (788)
                      ++++|++|++++|.
T Consensus       137 ~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          137 HFRNLKYLFLSDLP  150 (176)
T ss_dssp             GCTTCCEEEEESCT
T ss_pred             cCCCCCEEECCCCC
Confidence            66666666666664

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.99  E-value=3.5e-06  Score=73.29  Aligned_cols=97  Identities=15%  Similarity=0.125  Sum_probs=60.0

Q ss_pred             CeEeCCCCcCC-ccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCC-CcccccCCCCccccC
Q 003888          618 QTLNLSHNNLT-GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIP-EWTAQFATFNESSYE  695 (788)
Q Consensus       618 ~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p-~~~~~~~~~~~~~~~  695 (788)
                      ..++.++++++ ..+|..+.  ++|++|+|++|+|+...+..|..+++|+.|+|++|++.+... .|+..|..-......
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~~~   88 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAP   88 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCSGG
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCccccc
Confidence            47888888887 23454432  468899999999987767778888888888888888876332 112221110000000


Q ss_pred             CCCCCCCCCCCCCCCCCCCCcccCCCCC
Q 003888          696 GNTFLCGLPLPICRSPATMSEASIGNER  723 (788)
Q Consensus       696 gn~~~c~~~l~~c~~~~~~~~~~~~~~~  723 (788)
                             .....|.+|....|+.+....
T Consensus        89 -------~~~~~C~~P~~l~g~~l~~l~  109 (130)
T 3rfe_A           89 -------YRDLRCVAPPALRGRLLPYLA  109 (130)
T ss_dssp             -------GTTCBCCBSTTTTTCBGGGCC
T ss_pred             -------ccCcEeCcChHHcCCCcccCC
Confidence                   011268888888877655444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.97  E-value=1.2e-06  Score=79.72  Aligned_cols=83  Identities=11%  Similarity=0.108  Sum_probs=69.1

Q ss_pred             cccEEECCCCcccccCcccccCcccCCeEeCCCCc-CCccCCccccCC----CCCCEEECcCCc-ccccCCccccCCCCC
Q 003888          592 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN-LTGLIPSTFSNL----KHIESLDLSYNK-LNGKIPHQLVELKTL  665 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~L  665 (788)
                      .|+.||+++|.++...-..+..+++|++|+|++|. |++..-..+..+    ++|++|+|++|. |++.--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            69999999999988777778999999999999995 776544455554    479999999985 876555677889999


Q ss_pred             CEEEccCCc
Q 003888          666 AVFSVAYNN  674 (788)
Q Consensus       666 ~~L~l~~N~  674 (788)
                      +.|++++++
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            999999986

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.66  E-value=1.5e-05  Score=73.92  Aligned_cols=117  Identities=20%  Similarity=0.238  Sum_probs=75.4

Q ss_pred             cCCCCcEEeCCCC-CCCCCCCCCCcccccCCCCCCEEEcCCCCCCcC----CChhhcCCCCCCEEECCCCcCcCc----C
Q 003888           44 SMPSLKYLSMSDS-TLGTNSSRILDQGLCSLMHLQELYIDNNDLRGS----LPWCLANMTSLRILDVSSNQLTGS----I  114 (788)
Q Consensus        44 ~l~~L~~L~Ls~~-~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~~~~~----i  114 (788)
                      .-+.|++|+|+++ .+++.+.....+++..-+.|++|+|++|++.+.    +.+++..-+.|++|+|++|.|.+.    +
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            5678888888875 664322233334566777888888888888754    445556678888888888888622    2


Q ss_pred             ChhhhcCCCCCCEEECcCcc---cccc---CCccccccCCCCcEEEccCcccc
Q 003888          115 SSSPLVHLTSIEELMLSNNH---FQIP---ISLEPLFNHSRLKIFDAANNEIK  161 (788)
Q Consensus       115 ~~~~l~~l~~L~~L~Ls~n~---l~~~---~~~~~l~~l~~L~~L~l~~n~~~  161 (788)
                      .. .+..-+.|++|+|++|.   +...   .-...+..-+.|++|+++.+.+.
T Consensus       119 a~-aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          119 LR-STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HH-HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HH-HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            22 45555678888887652   2211   01134566678888888877644

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.47  E-value=2.3e-05  Score=72.73  Aligned_cols=116  Identities=11%  Similarity=0.127  Sum_probs=66.1

Q ss_pred             CCCCCccEEEcccCCc-ccccc----hhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcC-
Q 003888           16 PHFKSLDHLDMVFART-ALNTS----FLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGS-   89 (788)
Q Consensus        16 ~~~~~L~~L~L~~~~~-~~~~~----~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-   89 (788)
                      .+=+.|+.|+|  +++ ++...    +.+++. .-++|++|+|++|.+++.+....++.+..-+.|++|+|+.|.|.+. 
T Consensus        38 ~~n~~L~~L~L--~~nn~igd~ga~~la~aL~-~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           38 EDDTDLKEVNI--NNMKRVSKERIRSLIEAAC-NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL  114 (197)
T ss_dssp             TTCSSCCEEEC--TTCCSSCHHHHHHHHHHHT-TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             hcCCCccEEEC--CCCCCCCHHHHHHHHHHHh-hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence            34456777777  664 55432    345555 5567777777777775433333334455556677777777777643 


Q ss_pred             ---CChhhcCCCCCCEEECCCC---cCcC----cCChhhhcCCCCCCEEECcCccc
Q 003888           90 ---LPWCLANMTSLRILDVSSN---QLTG----SISSSPLVHLTSIEELMLSNNHF  135 (788)
Q Consensus        90 ---~~~~l~~l~~L~~L~Ls~n---~~~~----~i~~~~l~~l~~L~~L~Ls~n~l  135 (788)
                         +.+++..-+.|++|+|+++   .+..    .+.. .+..-+.|++|+++.|.+
T Consensus       115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCCc
Confidence               3344555566777777654   2221    1222 445556777777766643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.03  E-value=0.0012  Score=57.02  Aligned_cols=58  Identities=24%  Similarity=0.302  Sum_probs=46.5

Q ss_pred             cEEECCCCccc-ccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccc
Q 003888          594 SGLDLSCNKLI-GHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG  653 (788)
Q Consensus       594 ~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  653 (788)
                      ..++.+++.++ ..+|..+.  ++|+.|+|++|+|+.+.++.|..+++|+.|+|++|++.+
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            47888888886 35565443  468899999999998888888999999999999998865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	788
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-18
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-08
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	9e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-07
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-06
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	3e-06
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	5e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.001
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	5e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	9e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.004
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	9e-04

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 90.1 bits (222), Expect = 8e-20
 Identities = 69/404 (17%), Positives = 124/404 (30%), Gaps = 46/404 (11%)

Query: 287 DSSIPSSFGNMNF--LQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNF 344
           D+ I   F +          L    +T  + +        +  L      +K        
Sbjct: 9   DTPINQIFTDTALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIKS--IDGVE 63

Query: 345 NLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPE 404
            L NL  +    N L    P  L   + L  + +NNN ++   P           +   +
Sbjct: 64  YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 121

Query: 405 NHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHG-------- 456
                P+             +   +  + S  +    LS          L          
Sbjct: 122 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 181

Query: 457 -----QLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQL 511
                          ++L +L  + N+++   P  +   + L  L L  N L+      L
Sbjct: 182 ISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTL 237

Query: 512 CELNQLQLLDLSNNNLHGPIPPCFDN--TTLHESSNNSYSLKPFETSLVMDSMMIPAEKQ 569
             L  L  LDL+NN +    P       T L   +N   ++ P                 
Sbjct: 238 ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGL------------T 285

Query: 570 IHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTG 629
              N E     +  I     L  L+ L L  N +    P  + +LT++Q L  ++N ++ 
Sbjct: 286 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD 343

Query: 630 LIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYN 673
              S+ +NL +I  L   +N+++   P  L  L  +    +   
Sbjct: 344 --VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 89.7 bits (221), Expect = 1e-19
 Identities = 73/364 (20%), Positives = 137/364 (37%), Gaps = 30/364 (8%)

Query: 73  LMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 132
           L  +  L  D   ++ S+   +  + +L  ++ S+NQLT      PL +LT + +++++N
Sbjct: 43  LDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDIT---PLKNLTKLVDILMNN 97

Query: 133 NHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTF 192
           N       L  L N + L +F+    +I      ++             +S+  G     
Sbjct: 98  NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 157

Query: 193 PKFLYHQH-------DLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPI 245
                +Q        +L  +    ++ +      +L   T L  L   N+ ++     P+
Sbjct: 158 QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT--PL 215

Query: 246 HSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDL 305
                L  L ++ N  +    +     L +L   +++ N + +  P     +  L  L L
Sbjct: 216 GILTNLDELSLNGNQLKDIGTLA---SLTNLTDLDLANNQISNLAP--LSGLTKLTELKL 270

Query: 306 SNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQ 365
             NQ++   P     +  NLE      N  +    S   NL NL  L L  N++    P 
Sbjct: 271 GANQISNISPLAGLTALTNLEL-----NENQLEDISPISNLKNLTYLTLYFNNISDISP- 324

Query: 366 SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILD 425
            +S  + L+ L+  NN +S      L NLT +  +    N +    P     L  +  L 
Sbjct: 325 -VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLG 379

Query: 426 ISDN 429
           ++D 
Sbjct: 380 LNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 87.0 bits (214), Expect = 8e-19
 Identities = 75/389 (19%), Positives = 131/389 (33%), Gaps = 60/389 (15%)

Query: 273 LPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSN 332
           L  + +       + S        +N L  ++ SNNQLT   P       V++       
Sbjct: 43  LDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI 100

Query: 333 NNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYL------------NN 380
            ++       N     L + Q+        +        S   +               +
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160

Query: 381 NSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFH 440
                   + L NLT L+ + +  N           +L +L+ L  ++N IS   P    
Sbjct: 161 FGNQVTDLKPLANLTTLERLDISSNK--VSDISVLAKLTNLESLIATNNQISDITPLGIL 218

Query: 441 PLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGH 500
             +++++ L+ N L      GT    ++L  LDL+ N+++   P  + GL++L+ L LG 
Sbjct: 219 T-NLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 272

Query: 501 NNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMD 560
           N +    P+          L+ +      PI    + T L    NN   + P  +     
Sbjct: 273 NQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSS----- 327

Query: 561 SMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTL 620
                                        L+ L  L  + NK+       + NLT I  L
Sbjct: 328 -----------------------------LTKLQRLFFANNKVSD--VSSLANLTNINWL 356

Query: 621 NLSHNNLTGLIPSTFSNLKHIESLDLSYN 649
           +  HN ++ L P   +NL  I  L L+  
Sbjct: 357 SAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.6 bits (148), Expect = 1e-10
 Identities = 48/271 (17%), Positives = 99/271 (36%), Gaps = 24/271 (8%)

Query: 15  FPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLM 74
                ++  +  +   T+L           +  L  L+  +    +++       L  L 
Sbjct: 138 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 197

Query: 75  HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH 134
           +L+ L   NN +    P     +T+L  L ++ NQL        L  LT++ +L L+NN 
Sbjct: 198 NLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQ 252

Query: 135 FQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPK 194
                +L PL   ++L       N+I            P   L AL+      + +    
Sbjct: 253 IS---NLAPLSGLTKLTELKLGANQISNIS--------PLAGLTALTNLELNENQLEDIS 301

Query: 195 FLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFL 254
            + +  +L  + L   N+    P   + + TKL++L+  N+ ++      + +   + +L
Sbjct: 302 PISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFANNKVSDVS--SLANLTNINWL 356

Query: 255 DVSNNNFQGHIPVEIGDILPSLISFNISMNA 285
              +N      P+     L  +    ++  A
Sbjct: 357 SAGHNQISDLTPLA---NLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.1 bits (108), Expect = 9e-06
 Identities = 47/291 (16%), Positives = 99/291 (34%), Gaps = 35/291 (12%)

Query: 417 QLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSY 476
            L  +  L      I  S+    +  ++ Q++ S N L          + + LV + ++ 
Sbjct: 42  DLDQVTTLQADRLGIK-SIDGVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNN 97

Query: 477 NRLNGSIPNWVDGLSQLS------HLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGP 530
           N++    P                   +        +       N +  +   +      
Sbjct: 98  NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 157

Query: 531 IPPCFDNTTLHES-SNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKV 589
                +  T  +  +N +   +   +S  +  + + A+    E+   T   I+ I    +
Sbjct: 158 QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI 217

Query: 590 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYN 649
           L+ L  L L+ N+L       + +LT +  L+L++N ++ L P   S L  +  L L  N
Sbjct: 218 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 273

Query: 650 KLNGKIP--------------------HQLVELKTLAVFSVAYNNLSGEIP 680
           +++   P                      +  LK L   ++ +NN+S   P
Sbjct: 274 QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 324

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.9 bits (208), Expect = 1e-18
 Identities = 50/259 (19%), Positives = 83/259 (32%), Gaps = 4/259 (1%)

Query: 271 DILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLAL 330
            I  +     +  N +     +SF     L IL L +N L            +  +    
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 331 SNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRW 390
            N  L+    +    L  L +L L+   L+   P      ++L+ LYL +N+L       
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 391 LGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLS 450
             +L  L H+ +  N +       F  L+SL  L +  N ++   P  F  L        
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 451 KNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQ 510
                  L         +L  L L+ N             + L       + +   +P  
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQ- 266

Query: 511 LCELNQLQLLDLSNNNLHG 529
              L    L  L+ N+L G
Sbjct: 267 --RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (173), Expect = 4e-14
 Identities = 49/269 (18%), Positives = 92/269 (34%), Gaps = 11/269 (4%)

Query: 362 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSL 421
            +P  +   ++ + ++L+ N +S            L  + +  N L       F  L  L
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 422 QILDISDNNISGSL-PSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLN 480
           + LD+SDN    S+ P+ FH L              +L  G F   ++L  L L  N L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 481 GSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTL 540
               +    L  L+HL L  N +          L+ L  L L  N +    P  F +   
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 541 HESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSC 600
             +     +      +  +  +      ++++N               + + L     S 
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-----LWAWLQKFRGSS 257

Query: 601 NKLIGHIPPQIGNLTRIQTLNLSHNNLTG 629
           +++   +P ++          L+ N+L G
Sbjct: 258 SEVPCSLPQRLAGR---DLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (169), Expect = 1e-13
 Identities = 48/257 (18%), Positives = 91/257 (35%), Gaps = 5/257 (1%)

Query: 225 TKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMN 284
              ++++L  + ++        + R L  L + +N            +            
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 285 ALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNF 344
            L S  P++F  +  L  L L       E+   L      L++L L +N L+        
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 345 NLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPE 404
           +L NL  L L GN +     ++     SL+ L L+ N ++   P    +L  L  + +  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 405 NHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFF 464
           N+L          L +LQ L ++DN       +      +++   S + +   L +    
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQ---- 266

Query: 465 HCSSLVTLDLSYNRLNG 481
             +      L+ N L G
Sbjct: 267 RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 43/241 (17%), Positives = 73/241 (30%), Gaps = 6/241 (2%)

Query: 465 HCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSN 524
           +    VT       L  ++P  +   +    + L  N +             L +L L +
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHS 65

Query: 525 NNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYI 584
           N L       F    L E  + S      +   V  +      +    + +         
Sbjct: 66  NVLARIDAAAFTGLALLEQLDLSD---NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP 122

Query: 585 YQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESL 644
              + L+ L  L L  N L         +L  +  L L  N ++ +    F  L  ++ L
Sbjct: 123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182

Query: 645 DLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP 704
            L  N++    PH   +L  L    +  NNLS    E  A            N ++C   
Sbjct: 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242

Query: 705 L 705
            
Sbjct: 243 A 243

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 6e-08
 Identities = 44/288 (15%), Positives = 89/288 (30%), Gaps = 36/288 (12%)

Query: 98  TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAAN 157
            + + + +  N+++   ++S      ++  L L +N      +          ++  + N
Sbjct: 32  AASQRIFLHGNRISHVPAAS-FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 158 NEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFP 217
            ++                                P   +    L  + L    +    P
Sbjct: 91  AQL----------------------------RSVDPATFHGLGRLHTLHLDRCGLQELGP 122

Query: 218 NWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLI 277
                    L+ LYL +++L             L  L +  N     +P      L SL 
Sbjct: 123 GL-FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLD 180

Query: 278 SFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKG 337
              +  N +    P +F ++  L  L L  N L+  +P         L++L L++N    
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVC 239

Query: 338 HMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSG 385
              +R      L+  +   + +   +PQ L+         L  N L G
Sbjct: 240 DCRARPL-WAWLQKFRGSSSEVPCSLPQRLAGRDLKR---LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 4e-06
 Identities = 43/263 (16%), Positives = 81/263 (30%), Gaps = 12/263 (4%)

Query: 75  HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH 134
             Q +++  N +            +L IL + SN L    +++        +   LS+N 
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQL-DLSDNA 91

Query: 135 FQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPK 194
               +         RL      +     E+           Q   L  ++          
Sbjct: 92  QLRSVDPATFHGLGRLHTLH-LDRCGLQELGPGLFRGLAALQYLYLQDNALQA---LPDD 147

Query: 195 FLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFL 254
                 +L  + L H N     P         L +L L  + +             L  L
Sbjct: 148 TFRDLGNLTHLFL-HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 255 DVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEI 314
            +  NN    +P E    L +L    ++ N       +      +LQ    S++++   +
Sbjct: 207 YLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSL 264

Query: 315 PEHLAVSCVNLEFLALSNNNLKG 337
           P+ LA      +   L+ N+L+G
Sbjct: 265 PQRLA----GRDLKRLAANDLQG 283

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 85.2 bits (209), Expect = 1e-18
 Identities = 58/295 (19%), Positives = 102/295 (34%), Gaps = 33/295 (11%)

Query: 417 QLYSLQILDISDNNISG--SLPSCFHPLS-IEQVHLSKNMLHGQLKRGTFFHCSSLVTLD 473
           Q Y +  LD+S  N+     +PS    L  +  +++                 + L  L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 474 LSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPP 533
           +++  ++G+IP+++  +  L  L   +N L G +P  +  L  L  +    N + G IP 
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 534 CFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLL 593
            +        S    S+      L        A   +                       
Sbjct: 168 SY-----GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 594 SGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG 653
           +         +     ++G    +  L+L +N + G +P   + LK + SL++S+N L  
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL-- 280

Query: 654 KIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPIC 708
                                  GEIP+       F+ S+Y  N  LCG PLP C
Sbjct: 281 ----------------------CGEIPQGG-NLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 77.9 bits (190), Expect = 4e-16
 Identities = 55/264 (20%), Positives = 101/264 (38%), Gaps = 11/264 (4%)

Query: 392 GNLTGLKHIIMPENHLEG--PIPVGFCQLYSLQILDISD--NNISGSLPSCFHPLSIEQV 447
                + ++ +   +L    PIP     L  L  L I    N +    P+      +  +
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 448 HLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEV 507
           +++   + G           +LVTLD SYN L+G++P  +  L  L  +    N + G +
Sbjct: 107 YITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 508 PVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAE 567
           P      ++L      + N      P           + S ++          S++  ++
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG-----DASVLFGSD 220

Query: 568 KQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL 627
           K   +           + +  +   L+GLDL  N++ G +P  +  L  + +LN+S NNL
Sbjct: 221 KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

Query: 628 TGLIPSTFSNLKHIESLDLSYNKL 651
            G IP    NL+  +    + NK 
Sbjct: 281 CGEIPQ-GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 63.6 bits (153), Expect = 2e-11
 Identities = 38/264 (14%), Positives = 76/264 (28%), Gaps = 14/264 (5%)

Query: 75  HLQELYIDNNDLRG--SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 132
            +  L +   +L     +P  LAN+  L  L +             +  LT +  L +++
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 133 NHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAP-NFQLQALSLSSGYGDGVT 191
            +    I        + + +  + N           SL            +S    D   
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 192 FPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWL 251
               L+    +   RL+           L   +     L              +      
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE---------GDASVLFGSDK 221

Query: 252 RFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLT 311
               +          +    +  +L   ++  N +  ++P     + FL  L++S N L 
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 312 GEIPEHLAVSCVNLEFLALSNNNL 335
           GEIP+    +    +  A +NN  
Sbjct: 282 GEIPQ--GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 57.5 bits (137), Expect = 2e-09
 Identities = 56/271 (20%), Positives = 84/271 (30%), Gaps = 6/271 (2%)

Query: 146 NHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDV 205
              R+   D +   +        SL    + L  L +          P  +     L  +
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPY-LNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 206 RLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHI 265
            ++H           L     L  L    ++L+G     I S   L  +    N   G I
Sbjct: 107 YITH-TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 266 PVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNL 325
           P   G       S  IS N L   IP +F N+N   +    N           +      
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 326 EFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSG 385
                   N       +     NL  L L  N + G +PQ L++   L  L ++ N+L G
Sbjct: 226 IH---LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 386 KIPRWLGNLTGLKHIIMPENHLEGPIPVGFC 416
           +IP+  GNL          N      P+  C
Sbjct: 283 EIPQ-GGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.5 bits (205), Expect = 4e-18
 Identities = 49/311 (15%), Positives = 97/311 (31%), Gaps = 42/311 (13%)

Query: 348 NLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHL 407
           +LR +Q     LE ++P+ L        L L NN ++        NL  L  +I+  N +
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 408 EGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCS 467
               P  F  L  L+ L +S N +   LP        E       +   +       +  
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM 126

Query: 468 SLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNL 527
            +V L  +  + +G       G+ +LS++ +   N+     +       L  L L  N +
Sbjct: 127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKI 183

Query: 528 HGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQG 587
                              S++      +  + +     E  ++                
Sbjct: 184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN---------------- 227

Query: 588 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTF------SNLKHI 641
                        N  +  +P  + +   IQ + L +NN++ +  + F      +     
Sbjct: 228 -------------NNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 274

Query: 642 ESLDLSYNKLN 652
             + L  N + 
Sbjct: 275 SGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.8 bits (203), Expect = 7e-18
 Identities = 47/270 (17%), Positives = 95/270 (35%), Gaps = 15/270 (5%)

Query: 242 RLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQ 301
           ++P         LD+ NN        +  + L +L +  +  N +    P +F  +  L+
Sbjct: 24  KVPKDLPPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 302 ILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEG 361
            L LS NQL  E+PE +  +   L         ++  +F+    +  +  L        G
Sbjct: 83  RLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSG 140

Query: 362 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSL 421
               +      L  + + + +++  IP+  G    L  + +  N +          L +L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 422 QILDISDNNISGSLPSCFHPLS-IEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLN 480
             L +S N+IS            + ++HL+ N L              +  + L  N ++
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG--GLADHKYIQVVYLHNNNIS 255

Query: 481 G------SIPNWVDGLSQLSHLILGHNNLE 504
                    P +    +  S + L  N ++
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.1 bits (178), Expect = 1e-14
 Identities = 47/243 (19%), Positives = 87/243 (35%), Gaps = 8/243 (3%)

Query: 300 LQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHL 359
           L+++  S+  L  ++P+ L     +   L L NN +         NL NL +L L  N +
Sbjct: 12  LRVVQCSDLGLE-KVPKDLPP---DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 360 EGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLY 419
               P + +    LE LYL+ N L     +    L  L+        +   +  G  Q+ 
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 420 SLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRL 479
            +++      +      +      +  + ++       +         SL  L L  N++
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADT----NITTIPQGLPPSLTELHLDGNKI 183

Query: 480 NGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT 539
                  + GL+ L+ L L  N++       L     L+ L L+NN L        D+  
Sbjct: 184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY 243

Query: 540 LHE 542
           +  
Sbjct: 244 IQV 246

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.9 bits (167), Expect = 3e-13
 Identities = 37/216 (17%), Positives = 65/216 (30%), Gaps = 8/216 (3%)

Query: 467 SSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNN 526
                LDL  N++          L  L  LIL +N +    P     L +L+ L LS N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 527 LHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQ 586
           L                  N  +              +     +         +      
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVF-----NGLNQMIVVELGTNPLKSSGIENGA 145

Query: 587 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDL 646
            + +  LS + ++   +   IP   G    +  L+L  N +T +  ++   L ++  L L
Sbjct: 146 FQGMKKLSYIRIADTNI-TTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 647 SYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEW 682
           S+N ++      L     L    +  N L       
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 238

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.8 bits (133), Expect = 6e-09
 Identities = 52/316 (16%), Positives = 105/316 (33%), Gaps = 48/316 (15%)

Query: 46  PSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDV 105
           P    L + ++ +    + I D    +L +L  L + NN +    P   A +  L  L +
Sbjct: 31  PDTALLDLQNNKI----TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 106 SSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEIT 165
           S NQL       P     +++EL +  N               R  +F+  N  I  E+ 
Sbjct: 87  SKNQLK----ELPEKMPKTLQELRVHENE----------ITKVRKSVFNGLNQMIVVELG 132

Query: 166 ESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNT 225
            +   ++                             L  +R++        P  L  +  
Sbjct: 133 TNPLKSSGI-----------------ENGAFQGMKKLSYIRIAD-TNITTIPQGLPPS-- 172

Query: 226 KLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNA 285
            L +L+L  + +T      +     L  L +S N+             P L   +++ N 
Sbjct: 173 -LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNK 230

Query: 286 LDSSIPSSFGNMNFLQILDLSNNQLTG-----EIPEHLAVSCVNLEFLALSNNNLKGHMF 340
           L   +P    +  ++Q++ L NN ++        P        +   ++L +N ++    
Sbjct: 231 LV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI 289

Query: 341 SRN--FNLTNLRSLQL 354
             +    +    ++QL
Sbjct: 290 QPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.5 bits (114), Expect = 1e-06
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 3/101 (2%)

Query: 594 SGLDLSCNKL-IGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLN 652
               + C+ L +  +P  +        L+L +N +T +    F NLK++ +L L  NK++
Sbjct: 11  HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 653 GKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESS 693
              P     L  L    ++ N L     +            
Sbjct: 69  KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHE 109

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (151), Expect = 6e-11
 Identities = 53/449 (11%), Positives = 110/449 (24%), Gaps = 24/449 (5%)

Query: 251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALD----SSIPSSFGNMNFLQILDLS 306
           ++ LD+           E+  +L       +    L       I S+      L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 307 NNQLTGE----IPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGE 362
           +N+L       + + L      ++ L+L N  L G       +         E +  +  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 363 IPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQ 422
           +  +  +      L         ++     +    + +            +        +
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 423 ILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGS 482
                        P     L +E   ++ +                 + L  +     G 
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 483 IPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE 542
                  L   S L        G       +L ++     S   L        D      
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 543 SSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNK 602
                      E+  V       A      +     + +  +         +G       
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG------- 356

Query: 603 LIGHIPPQIGNLTRIQTLNLSHNNLTGL----IPSTFSNLKHIESLDLSYNKLNGKIPHQ 658
           +           + ++ L L+  +++      + +T      +  LDLS N L      Q
Sbjct: 357 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 416

Query: 659 LVE-----LKTLAVFSVAYNNLSGEIPEW 682
           LVE        L    +     S E+ + 
Sbjct: 417 LVESVRQPGCLLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (139), Expect = 2e-09
 Identities = 58/448 (12%), Positives = 122/448 (27%), Gaps = 21/448 (4%)

Query: 99  SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQ---IPISLEPLFNHSRLKIFDA 155
            ++ LD+   +L+ +  +  L  L   + + L +              L  +  L   + 
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 156 ANNEIKAEITES--HSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMD 213
            +NE+           L  P+ ++Q LSL +    G            L  ++  H++ +
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 214 GEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDIL 273
                              + D      +L +              +     P      +
Sbjct: 123 LLGDAG------LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 176

Query: 274 PSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNN 333
            +       +  L   +  S   +  L++               +  S  +L  LAL +N
Sbjct: 177 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 236

Query: 334 NLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGN 393
            L     +         S +L    +      +         L    +     +      
Sbjct: 237 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 296

Query: 394 LTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNM 453
             G + +          +   + +  S      S  +   +       L I      ++ 
Sbjct: 297 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDA 355

Query: 454 LHGQLKRGTFFHCSSLVTLDLSYNRLNG----SIPNWVDGLSQLSHLILGHNNLEGEVPV 509
              +L +G     S L  L L+   ++     S+   +     L  L L +N L     +
Sbjct: 356 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 415

Query: 510 QLCE-----LNQLQLLDLSNNNLHGPIP 532
           QL E        L+ L L +      + 
Sbjct: 416 QLVESVRQPGCLLEQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 3e-06
 Identities = 51/463 (11%), Positives = 108/463 (23%), Gaps = 31/463 (6%)

Query: 47  SLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRG----SLPWCLANMTSLRI 102
            ++ L +    L   S     + L  L   Q + +D+  L       +   L    +L  
Sbjct: 3   DIQSLDIQCEEL---SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 103 LDVSSNQLTG----SISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANN 158
           L++ SN+L       +          I++L L N                 L      + 
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 119

Query: 159 EIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPN 218
                      L                         L +            ++    P+
Sbjct: 120 SDNLLGDAGLQLLCEGLLDP---------QCRLEKLQLEYCSLSAASCEPLASVLRAKPD 170

Query: 219 WLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLIS 278
           +     +           L    +        L+       +        I     SL  
Sbjct: 171 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 230

Query: 279 FNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGH 338
             +  N L     +            L    +            +     A  +      
Sbjct: 231 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 290

Query: 339 MFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLK 398
             +   +       +             +  CS       + +S+  +    L       
Sbjct: 291 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI--S 348

Query: 399 HIIMPENHLEGPIPVGFCQLYSLQILDISDNNISG----SLPSCFHPL-SIEQVHLSKNM 453
           +  + +  +             L++L ++D ++S     SL +      S+ ++ LS N 
Sbjct: 349 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 408

Query: 454 LHGQ----LKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQ 492
           L       L          L  L L     +  + + +  L +
Sbjct: 409 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 5e-06
 Identities = 60/476 (12%), Positives = 117/476 (24%), Gaps = 41/476 (8%)

Query: 201 DLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLT--GPFRLP--IHSHRWLRFLDV 256
           D++ + +    +       LL    + + + L +  LT      +   +  +  L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 257 SNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPE 316
            +N         +   L +                        +Q L L N  LTG    
Sbjct: 63  RSNELGDVGVHCVLQGLQT--------------------PSCKIQKLSLQNCCLTGAGCG 102

Query: 317 HLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGL 376
            L+ +   L  L   + +      +    L                   SLS  S     
Sbjct: 103 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 162

Query: 377 YLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLP 436
            +       K      N      + +    L+               +   +      + 
Sbjct: 163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 222

Query: 437 SCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHL 496
           +    L    +  +K    G  +        S     L       +     D    L   
Sbjct: 223 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 282

Query: 497 ILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETS 556
                       +       L    L        +     + T    S+ S  L      
Sbjct: 283 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 342

Query: 557 LVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKL----IGHIPPQIG 612
           L +       E                   G+  S+L  L L+   +       +   + 
Sbjct: 343 LELQISNNRLEDAGVREL--------CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL 394

Query: 613 NLTRIQTLNLSHNNLTG-----LIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK 663
               ++ L+LS+N L       L+ S       +E L L     + ++  +L  L+
Sbjct: 395 ANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 3e-05
 Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 5/77 (6%)

Query: 323 VNLEFLALSNNNLKGHMFSRNF-NLTNLRSLQLEGNHLEGE----IPQSLSKCSSLEGLY 377
           ++++ L +    L    ++     L   + ++L+   L       I  +L    +L  L 
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 378 LNNNSLSGKIPRWLGNL 394
           L +N L       +   
Sbjct: 62  LRSNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 3e-05
 Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 14/105 (13%)

Query: 288 SSIPSSFGNMNFLQILDLSNNQLTGEIPEHLA---VSCVNLEFLALSNNNLKGHMFSR-- 342
                     + L++L L++  ++      LA   ++  +L  L LSNN L      +  
Sbjct: 359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418

Query: 343 ---NFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLS 384
                    L  L L   +   E+         L+ L  +  SL 
Sbjct: 419 ESVRQPGCLLEQLVLYDIYWSEEMED------RLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 6e-05
 Identities = 49/457 (10%), Positives = 117/457 (25%), Gaps = 28/457 (6%)

Query: 20  SLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQEL 79
            +  LD+      L+ +    +   +   + + + D  L     + +   L     L EL
Sbjct: 3   DIQSLDI--QCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 80  YIDNNDLRGSLPWCLA-----NMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNN- 133
            + +N+L      C+          ++ L + +  LTG+        L ++  L   +  
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 134 -----------HFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSL 182
                        +  +  +      +L+    +    +   +   +         + + 
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 183 SSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFR 242
            +  G  V           LE ++L    +  +    L         L  +         
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240

Query: 243 LPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQI 302
           + +           S           I       +   +        +  +   +     
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300

Query: 303 LDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGE 362
             L    L                  A  ++       +R      + + +LE   +   
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360

Query: 363 IPQSLSKCSSLEGLYLNNNSLSGK----IPRWLGNLTGLKHIIMPENHLEGPIPVGFCQ- 417
                   S L  L+L +  +S      +   L     L+ + +  N L     +   + 
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420

Query: 418 ----LYSLQILDISDNNISGSLPSCFHPLSIEQVHLS 450
                  L+ L + D   S  +      L  ++  L 
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 12/100 (12%)

Query: 43  ESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLA-----NM 97
           +    L+ L ++D  +  +S   L   L +   L+EL + NN L  +    L        
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 98  TSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQI 137
             L  L +     +  +          ++ L       ++
Sbjct: 426 CLLEQLVLYDIYWSEEMED-------RLQALEKDKPSLRV 458

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.3 bits (147), Expect = 7e-11
 Identities = 40/182 (21%), Positives = 61/182 (33%), Gaps = 4/182 (2%)

Query: 347 TNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENH 406
            +   L L  N L      +L   + L  L L+   L+         L  L  + +  N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQ 88

Query: 407 LEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHC 466
           L+    +G     +L +LD+S N ++         L   Q    K      L  G     
Sbjct: 89  LQSLPLLGQTL-PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 467 SSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNN 526
             L  L L+ N L       ++GL  L  L+L  N+L   +P      + L    L  N 
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206

Query: 527 LH 528
             
Sbjct: 207 WL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 4e-09
 Identities = 28/186 (15%), Positives = 51/186 (27%), Gaps = 8/186 (4%)

Query: 467 SSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNN 526
                L LS N L       +   ++L+ L L           +L     L +L   + +
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-----LTKLQVDGTLPVLGTLDLS 85

Query: 527 LHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQ 586
            +          TL   +    S     +  +     +   ++++            +  
Sbjct: 86  HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 587 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDL 646
                      L+ N L       +  L  + TL L  N+L   IP  F     +    L
Sbjct: 146 PTPKLEKL--SLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFL 202

Query: 647 SYNKLN 652
             N   
Sbjct: 203 HGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 5e-09
 Identities = 36/211 (17%), Positives = 66/211 (31%), Gaps = 11/211 (5%)

Query: 465 HCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSN 524
             +S + ++     L  ++P  +      + L L  N L       L    +L  L+L  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 525 NNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYI 584
             L                               +  +          +  F       +
Sbjct: 65  AELTKLQVDGT-------LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 585 YQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESL 644
              + L  L  L L  N+L    P  +    +++ L+L++NNLT L     + L+++++L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 645 DLSYNKLNGKIPHQLVELKTLAVFSVAYNNL 675
            L  N L   IP        L    +  N  
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (127), Expect = 2e-08
 Identities = 44/196 (22%), Positives = 67/196 (34%), Gaps = 6/196 (3%)

Query: 345 NLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPE 404
            + +   +  +  +L   +P  L K      L+L+ N L       L   T L  + +  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL-- 62

Query: 405 NHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFF 464
           +  E         L  L  LD+S N +           ++  + +S N L   L  G   
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALR 121

Query: 465 HCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSN 524
               L  L L  N L    P  +    +L  L L +NNL       L  L  L  L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 525 NNLHGPIPPCFDNTTL 540
           N+L+      F +  L
Sbjct: 182 NSLYTIPKGFFGSHLL 197

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 36/235 (15%), Positives = 61/235 (25%), Gaps = 39/235 (16%)

Query: 76  LQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHF 135
             E+  D  +L  +LP  L       IL +S N L    S + L+  T + +L L     
Sbjct: 12  HLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAEL 67

Query: 136 QIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKF 195
                   L     L +       +                                   
Sbjct: 68  TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP----------------------ALTVL 105

Query: 196 LYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLD 255
               + L  + L  +   GE     L+ N                    + +        
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELK------------TLPPGLLTPTPKLEKL 153

Query: 256 VSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQL 310
              NN    +P  + + L +L +  +  N+   +IP  F   + L    L  N  
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 32/216 (14%), Positives = 55/216 (25%), Gaps = 17/216 (7%)

Query: 121 HLTSIEELMLSNNHFQ-IPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQA 179
            + S  E+     +   +P  L          I   + N +      +     P  +L  
Sbjct: 8   KVASHLEVNCDKRNLTALPPDLPK-----DTTILHLSENLLYTFSLATLM---PYTRLTQ 59

Query: 180 LSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTG 239
           L+L       +     L     L+       ++              +    L +  L  
Sbjct: 60  LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 240 PFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNF 299
              L      +         N    +P  +    P L   +++ N L          +  
Sbjct: 120 LRGLGELQELY------LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173

Query: 300 LQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNL 335
           L  L L  N L   IP+        L F  L  N  
Sbjct: 174 LDTLLLQENSLY-TIPKGF-FGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 29/188 (15%), Positives = 48/188 (25%), Gaps = 11/188 (5%)

Query: 75  HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH 134
               L++  N L       L   T L  L++   +LT       L  L +++        
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS 91

Query: 135 FQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPK 194
             +     P      +      +  + A               +  +L  G         
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG--------- 142

Query: 195 FLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFL 254
            L       +      N   E P  LL     L  L L  +SL    +        L F 
Sbjct: 143 -LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK-GFFGSHLLPFA 200

Query: 255 DVSNNNFQ 262
            +  N + 
Sbjct: 201 FLHGNPWL 208

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (144), Expect = 2e-10
 Identities = 45/290 (15%), Positives = 89/290 (30%), Gaps = 22/290 (7%)

Query: 254 LDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGE 313
           LD++  N    +   +  +   +I+F    + +D  +   F     +Q +DLSN+ +   
Sbjct: 5   LDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVS 61

Query: 314 IPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSL 373
               +   C  L+ L+L    L   + +     +NL  L L G     E        S  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 374 EGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISG 433
               LN +       + +          + + +L G          S             
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS------------- 168

Query: 434 SLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSY-NRLNGSIPNWVDGLSQ 492
                    ++  + LS +++        FF  + L  L LS    +       +  +  
Sbjct: 169 --TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 226

Query: 493 LSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE 542
           L  L +     +G + +       L  L ++ ++      P   N    E
Sbjct: 227 LKTLQVFGIVPDGTLQL---LKEALPHLQINCSHFTTIARPTIGNKKNQE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 1e-08
 Identities = 43/255 (16%), Positives = 81/255 (31%), Gaps = 9/255 (3%)

Query: 420 SLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRL 479
            +       + +   L   F P  ++ + LS +++      G    CS L  L L   RL
Sbjct: 24  GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL 83

Query: 480 NGSIPNWVDGLSQLSHLILGHNNLEGEVPVQ-----LCELNQLQLLDLSNNNLHGPIPPC 534
           +  I N +   S L  L L   +   E  +Q        L++L L    +          
Sbjct: 84  SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 143

Query: 535 FDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLS 594
              +      N S   K  + S +   +         +  +          +   L+ L 
Sbjct: 144 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 203

Query: 595 GLDLS-CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNG 653
            L LS C  +I     ++G +  ++TL +      G +      L H   L ++ +    
Sbjct: 204 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH---LQINCSHFTT 260

Query: 654 KIPHQLVELKTLAVF 668
                +   K   ++
Sbjct: 261 IARPTIGNKKNQEIW 275

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 9e-06
 Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 3/114 (2%)

Query: 596 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 655
           LDL+   L   +  ++ +   +       + +   +   FS  + ++ +DLS + +    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVST 62

Query: 656 PHQLVE-LKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLPIC 708
            H ++     L   S+    LS  I    A+ +     +  G +      L   
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 116

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 8e-04
 Identities = 27/254 (10%), Positives = 68/254 (26%), Gaps = 13/254 (5%)

Query: 75  HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH 134
            +       + +   L    +    ++ +D+S++ +  S     L   + ++ L L    
Sbjct: 24  GVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82

Query: 135 FQIPISLEPLFNHSRLKIFDAANNE------IKAEITESHSLTAPNFQLQALSLSSGYGD 188
              PI +  L  +S L   + +         ++  ++    L   N              
Sbjct: 83  LSDPI-VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 141

Query: 189 GVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSH 248
            V        Q +L            +    +      +      +  L           
Sbjct: 142 AVAHVSETITQLNLSG--YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL 199

Query: 249 RWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNN 308
            +L+ L +S         +     +P+L +  +     D ++         L  L ++ +
Sbjct: 200 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEA---LPHLQINCS 256

Query: 309 QLTGEIPEHLAVSC 322
             T      +    
Sbjct: 257 HFTTIARPTIGNKK 270

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.3 bits (124), Expect = 4e-08
 Identities = 29/192 (15%), Positives = 64/192 (33%), Gaps = 18/192 (9%)

Query: 467 SSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNN 526
           +  +  +L    +  ++    + L+ +  +I  +++++    +Q   L  +  L L+ N 
Sbjct: 24  AETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNGNK 79

Query: 527 LHGP-----------IPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFE 575
           L              +    +      S  +   LK         S +            
Sbjct: 80  LTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESL 139

Query: 576 FTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTF 635
           +   N                    +  I  I P +  LT++Q L LS N+++ L     
Sbjct: 140 YLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL--RAL 196

Query: 636 SNLKHIESLDLS 647
           + LK+++ L+L 
Sbjct: 197 AGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 2e-05
 Identities = 28/194 (14%), Positives = 60/194 (30%), Gaps = 20/194 (10%)

Query: 345 NLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPE 404
                    L+   +   + Q+  + +S++ +  NN+ +       +  L  +  + +  
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 405 NHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFF 464
           N L    P+   +      LD +      SL       S+   H   + ++G +      
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 465 HCSSLVTLDLSYNRLNGSIPNWVD--------------GLSQLSHLILGHNNLEGEVPVQ 510
                         L+                      GL++L +L L  N++       
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRA 195

Query: 511 LCELNQLQLLDLSN 524
           L  L  L +L+L +
Sbjct: 196 LAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 9e-05
 Identities = 39/209 (18%), Positives = 68/209 (32%), Gaps = 33/209 (15%)

Query: 265 IPVEIGDILP-----SLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLA 319
           +P  I  I         I  N+   ++  ++  +   +N +  +  +N+ +         
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQ-- 65

Query: 320 VSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSL------------------QLEGNHLEG 361
               N+  L L+ N L       N        L                   L   H   
Sbjct: 66  -YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124

Query: 362 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSL 421
                L     LE LYL NN ++         LT L  + + +N +   +P     L  L
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDIVP--LAGLTKL 180

Query: 422 QILDISDNNISGSLPSCFHPLSIEQVHLS 450
           Q L +S N+IS  L +     +++ + L 
Sbjct: 181 QNLYLSKNHIS-DLRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 28/203 (13%), Positives = 58/203 (28%), Gaps = 17/203 (8%)

Query: 296 NMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLE 355
                   +L    +T  + +       +++ +  +N+++K         L N+  L L 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLN 76

Query: 356 GNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGF 415
           GN L             L  L         +      +       +   +     I    
Sbjct: 77  GNKLTD--------IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN 128

Query: 416 CQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLS 475
             ++  Q+  +   N   +  +    L+       ++     +        + L  L LS
Sbjct: 129 GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLS 186

Query: 476 YNRLNGSIPNWVDGLSQLSHLIL 498
            N +  S    + GL  L  L L
Sbjct: 187 KNHI--SDLRALAGLKNLDVLEL 207

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 53.3 bits (126), Expect = 5e-08
 Identities = 60/316 (18%), Positives = 96/316 (30%), Gaps = 25/316 (7%)

Query: 72  SLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 131
              HL+ L    N L   LP       SL+ L V +N L       PL+    +    L 
Sbjct: 56  LPPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE 111

Query: 132 NNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVT 191
                   S   + +     +    +     E   + +        +  +L         
Sbjct: 112 KLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN-NQLEELPELQNLPFLTAIYAD 170

Query: 192 FPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPI------ 245
                        +       +       L+N   L  +Y  N+ L     LP       
Sbjct: 171 NNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALN 230

Query: 246 -HSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILD 304
              +      ++  +     +   I   L  L      +NA  + I S       L+ L+
Sbjct: 231 VRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELN 290

Query: 305 LSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIP 364
           +SNN+L  E+P         LE L  S N+L            NL+ L +E N L  E P
Sbjct: 291 VSNNKLI-ELPALPP----RLERLIASFNHLA----EVPELPQNLKQLHVEYNPLR-EFP 340

Query: 365 QSLSKCSSLEGLYLNN 380
                  S+E L +N+
Sbjct: 341 DIP---ESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.7 bits (122), Expect = 2e-07
 Identities = 63/337 (18%), Positives = 109/337 (32%), Gaps = 33/337 (9%)

Query: 347 TNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENH 406
                L+L    L   +P+       LE L  + NSL+ ++P    +L   K +++  N+
Sbjct: 38  RQAHELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPELPQSL---KSLLVDNNN 89

Query: 407 LEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHC 466
           L+         L  L       NN    LP   +   ++ + +  N L            
Sbjct: 90  LKA-----LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 144

Query: 467 SSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNN 526
                          +    +  L  L  L   + +      +    L+   ++  +N  
Sbjct: 145 ----------IAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNIL 194

Query: 527 LHGPIPPCFDN-TTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIY 585
              P        TT++  +N   +L     SL   ++       + E  +  T       
Sbjct: 195 EELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 254

Query: 586 QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLD 645
               LS L       N     I         ++ LN+S+N L   +P+    L+    L 
Sbjct: 255 IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLER---LI 310

Query: 646 LSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEW 682
            S+N L  ++P     LK L    V YN L  E P+ 
Sbjct: 311 ASFNHLA-EVPELPQNLKQL---HVEYNPLR-EFPDI 342

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 52.2 bits (123), Expect = 1e-07
 Identities = 37/330 (11%), Positives = 94/330 (28%), Gaps = 23/330 (6%)

Query: 348 NLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGK----IPRWLGNLTGLKHIIMP 403
           +L+   +     +  +   L +  S++ + L+ N++  +    +   + +   L+     
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 404 ENH---LEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKR 460
           +     ++  IP     L    +     + +  S  +         +         +   
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 461 GTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLL 520
                        ++      ++         L  +I G N LE     +  +  Q   L
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 521 DLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKN 580
             +   +   I P      L E       LK  +      + +  +   I        + 
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 581 IAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTG-----LIPSTF 635
           +              L       +     ++ N   +QTL L +N +       L     
Sbjct: 248 LGLND--------CLLSARGAAAVVDAFSKLEN-IGLQTLRLQYNEIELDAVRTLKTVID 298

Query: 636 SNLKHIESLDLSYNKLNGKIPHQLVELKTL 665
             +  +  L+L+ N+   +    + E++ +
Sbjct: 299 EKMPDLLFLELNGNRF-SEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.2 bits (97), Expect = 2e-04
 Identities = 41/329 (12%), Positives = 88/329 (26%), Gaps = 41/329 (12%)

Query: 75  HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSIS---SSPLVHLTSIEELMLS 131
            L+   I   D + S+   L    S++ + +S N +    +   S  +     +E    S
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 132 NNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVT 191
           +          P      L+            ++++         L          + + 
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 192 FPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWL 251
                        +  +   +              +      N    G  +    + +  
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR--NRLENGSMKEWAKTFQSH 185

Query: 252 RFLDVSNNNFQGHIPVEIGDILPSLIS-----------FNISMNALDSSIPSSFGNMNFL 300
           R L        G  P  I  +L   ++            N   +   S++  +  +   L
Sbjct: 186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 245

Query: 301 QILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLE 360
           + L L++  L+      +                              L++L+L+ N +E
Sbjct: 246 RELGLNDCLLSARGAAAVV-------------------DAFSKLENIGLQTLRLQYNEIE 286

Query: 361 GEIPQSL-----SKCSSLEGLYLNNNSLS 384
            +  ++L      K   L  L LN N  S
Sbjct: 287 LDAVRTLKTVIDEKMPDLLFLELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.2 bits (97), Expect = 2e-04
 Identities = 36/312 (11%), Positives = 85/312 (27%), Gaps = 22/312 (7%)

Query: 47  SLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRG----SLPWCLANMTSLRI 102
           S++  S+    + T   + +   L     ++E+ +  N +       L   +A+   L I
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 103 LDVSSNQLTGSISSSPLVHLTSIEELMLSNN-------HFQIPISLEPLFNHSRLKIFDA 155
            + S           P      ++ L+                 + +        K    
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 156 ANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGE 215
            +  +        +       LQ L+++    +       +  ++ LE+  +       +
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 216 FPNWLLENNTKLRQLYLVNDS------LTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEI 269
               L         +            L     L +   +   F  + ++     +    
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243

Query: 270 GDILPSLISFNISMNALDSSI-PSSFGNMNFLQILDLSNNQLTGE----IPEHLAVSCVN 324
                 L    +S     + +   S      LQ L L  N++  +    +   +     +
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 303

Query: 325 LEFLALSNNNLK 336
           L FL L+ N   
Sbjct: 304 LLFLELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 39/294 (13%), Positives = 79/294 (26%), Gaps = 54/294 (18%)

Query: 288 SSIPSSFGNMNFLQILDLSNNQLTGEIPEHLA---VSCVNLEFLALSNNNL--------- 335
            S+ +     + ++ + LS N +  E    L+    S  +LE    S+            
Sbjct: 21  KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPE 80

Query: 336 -KGHMFSRNFNLTNLRSLQLEGNHLEGEIPQS-----------------LSKCSSLEGLY 377
               +         L +++L  N       +                   +      G  
Sbjct: 81  ALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAK 140

Query: 378 LNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQ-------------LYSLQIL 424
           +        + +   N   L+ II   N LE      + +             + +    
Sbjct: 141 IARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP 200

Query: 425 DISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIP 484
           +  ++ +   L  C     ++    +   L             +L  L L+   L+    
Sbjct: 201 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 260

Query: 485 NWV------DGLSQLSHLILGHNNLEGEVPVQLCE-----LNQLQLLDLSNNNL 527
             V           L  L L +N +E +    L       +  L  L+L+ N  
Sbjct: 261 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (117), Expect = 4e-07
 Identities = 26/210 (12%), Positives = 51/210 (24%), Gaps = 2/210 (0%)

Query: 467 SSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNN 526
            + + L     +L         G   L  + +  N++   +   +               
Sbjct: 29  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88

Query: 527 LHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQ 586
            +           L        S    +    +  +    +  +          I     
Sbjct: 89  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 148

Query: 587 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDL 646
             +      L L+ N +              +     +NNL  L    F        LD+
Sbjct: 149 VGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 208

Query: 647 SYNKLNGKIPHQLVELKTLAVFSVAYNNLS 676
           S  +++    + L  LK L   S    NL 
Sbjct: 209 SRTRIHSLPSYGLENLKKLRARST--YNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 29/235 (12%), Positives = 67/235 (28%), Gaps = 7/235 (2%)

Query: 75  HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH 134
             +      + +   +P  L    +   L     +L   I          +E++ +S N 
Sbjct: 9   SNRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQND 64

Query: 135 FQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPK 194
               I  +   N  +L             I        PN Q   +S +           
Sbjct: 65  VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI 124

Query: 195 FLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFL 254
               +  L+     +++            + +   L+L  + +        +  +     
Sbjct: 125 HSLQKVLLDIQDNINIHTIERNSFV--GLSFESVILWLNKNGIQEIHNCAFNGTQLDEL- 181

Query: 255 DVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQ 309
           ++S+NN    +P ++       +  +IS   + S       N+  L+     N +
Sbjct: 182 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 30/237 (12%), Positives = 64/237 (27%), Gaps = 14/237 (5%)

Query: 420 SLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRL 479
           S ++    ++ ++  +PS   P +  ++      L   +++G F     L  +++S N +
Sbjct: 9   SNRVFLCQESKVT-EIPSDL-PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDV 65

Query: 480 NGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT 539
              I   V       H I                 N   L  L  +N      P      
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 540 LHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLS 599
             +             ++  +S +  + + +            +        L       
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 600 CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFS-----------NLKHIESLD 645
            N L           +    L++S   +  L                 NLK + +L+
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLE 242

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 35/220 (15%), Positives = 73/220 (33%), Gaps = 7/220 (3%)

Query: 288 SSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLT 347
           + IPS          L     +L        +      +     N+ L+        NL 
Sbjct: 21  TEIPSDLPRN--AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 78

Query: 348 NLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHL 407
            L  +++E  +    I     +        L +N+    +P      +  K ++  ++++
Sbjct: 79  KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI 138

Query: 408 EGPIPVGFCQLYSLQI---LDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFF 464
                     +        L ++ N I       F+   +++++LS N    +L    F 
Sbjct: 139 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFH 198

Query: 465 HCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLE 504
             S  V LD+S  R++      ++ L +L        NL+
Sbjct: 199 GASGPVILDISRTRIHSLPSYGLENLKKLR--ARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 34/238 (14%), Positives = 71/238 (29%), Gaps = 10/238 (4%)

Query: 99  SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANN 158
           S R+     +++T      P     +  EL       ++ I          L+  + + N
Sbjct: 9   SNRVFLCQESKVT----EIPSDLPRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQN 63

Query: 159 EIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDGEFPN 218
           ++   I        P        +          P+   +  +L+ + +S+  +      
Sbjct: 64  DVLEVIEADVFSNLPKLHEI--RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV 121

Query: 219 WLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLIS 278
             + +  K+      N ++    R       +   +   N N    I     +       
Sbjct: 122 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDEL 181

Query: 279 FNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLK 336
                N L+      F   +   ILD+S  ++   +P +   +   L   A S  NLK
Sbjct: 182 NLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLR--ARSTYNLK 236

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 6e-07
 Identities = 26/138 (18%), Positives = 51/138 (36%), Gaps = 8/138 (5%)

Query: 292 SSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRS 351
           + + N    + LDL   ++   + E+L  +    + +  S+N +          L  L++
Sbjct: 12  AQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 352 LQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSG----KIPRWLGNLTGLKHIIMPENHL 407
           L +  N +             L  L L NNSL           L +LT L  +  P  + 
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 408 EGPIPVGFCQLYSLQILD 425
           +        ++  +++LD
Sbjct: 128 KHYRLYVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 1e-05
 Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 3/74 (4%)

Query: 609 PQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVF 668
            Q  N  R + L+L    +   I +  + L   +++D S N++          L+ L   
Sbjct: 12  AQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTL 68

Query: 669 SVAYNNLSGEIPEW 682
            V  N +       
Sbjct: 69  LVNNNRICRIGEGL 82

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 20/124 (16%), Positives = 35/124 (28%), Gaps = 3/124 (2%)

Query: 581 IAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKH 640
           I    Q         LDL   K I  I      L +   ++ S N +  L    F  L+ 
Sbjct: 8   IEQAAQYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRR 64

Query: 641 IESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFL 700
           +++L ++ N++          L  L    +  N+L                        +
Sbjct: 65  LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 124

Query: 701 CGLP 704
               
Sbjct: 125 TNKK 128

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 9e-07
 Identities = 31/238 (13%), Positives = 75/238 (31%), Gaps = 27/238 (11%)

Query: 95  ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFD 154
             + +   +    + +T +++ +    L  I  L           ++E +   + L   +
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLE 69

Query: 155 AANNEIKAEITESHSLTAPNFQLQALSLSSGYGDGVTFPKFLYHQHDLEDVRLSHVNMDG 214
             +N+I       +           L+  +         K +     L+ ++   +    
Sbjct: 70  LKDNQITDLAPLKN-----------LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ 118

Query: 215 EFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILP 274
                 L   + L+ LYL  + +T    L   ++     +  +  +    +         
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANL-----S 173

Query: 275 SLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSN 332
            L +     N +    P    ++  L  + L NNQ++   P     +  NL  + L+N
Sbjct: 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA---NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.2 bits (108), Expect = 6e-06
 Identities = 34/210 (16%), Positives = 67/210 (31%), Gaps = 19/210 (9%)

Query: 448 HLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEV 507
              K+ +   +   T      + TL      +  +I   V  L+ L  L L  N +    
Sbjct: 25  AAGKSNVTDTV---TQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQITDLA 79

Query: 508 PVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETS-----LVMDSM 562
           P++         L  +       I       TL  +S     + P         L +D  
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139

Query: 563 MIPAEKQIHENFEFTTKNIAYIYQGKVLSL-----LSGLDLSCNKLIGHIPPQIGNLTRI 617
            I     +         +I       +  L     L+ L    NK+    P  + +L  +
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNL 197

Query: 618 QTLNLSHNNLTGLIPSTFSNLKHIESLDLS 647
             ++L +N ++ + P   +N  ++  + L+
Sbjct: 198 IEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 1e-04
 Identities = 29/210 (13%), Positives = 70/210 (33%), Gaps = 17/210 (8%)

Query: 467 SSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNN 526
           ++ + +    + +  ++      L  ++ L      +     VQ   LN L  L+L +N 
Sbjct: 19  ANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKDNQ 74

Query: 527 L-HGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIY 585
           +            T  E S N          L     +     QI +       +   + 
Sbjct: 75  ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134

Query: 586 QGKVLSLLSGLDLSCNKLIGHI---------PPQIGNLTRIQTLNLSHNNLTGLIPSTFS 636
              +  + +   L+    + ++            + NL+++ TL    N ++ + P   +
Sbjct: 135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LA 192

Query: 637 NLKHIESLDLSYNKLNGKIP-HQLVELKTL 665
           +L ++  + L  N+++   P      L  +
Sbjct: 193 SLPNLIEVHLKNNQISDVSPLANTSNLFIV 222

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 70  LCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 129
           L +L  L  L  D+N +    P  LA++ +L  + + +NQ++      PL + +++  + 
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS---PLANTSNLFIVT 223

Query: 130 LSN 132
           L+N
Sbjct: 224 LTN 226

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.9 bits (108), Expect = 1e-06
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 7/125 (5%)

Query: 376 LYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSL 435
           L+L +  L+  +   L  L  + H+ +  N L    P     L  L++L  SDN +  ++
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALE-NV 58

Query: 436 PSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRL---NGSIPNWVDGLSQ 492
               +   ++++ L  N L           C  LV L+L  N L    G      + L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 493 LSHLI 497
           +S ++
Sbjct: 119 VSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 4e-05
 Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 10/126 (7%)

Query: 280 NISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHM 339
           +++   L  ++      +  +  LDLS+N+L    P   A+ C+ +       ++     
Sbjct: 4   HLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVL----QASDNALEN 57

Query: 340 FSRNFNLTNLRSLQLEGNHLEG-EIPQSLSKCSSLEGLYLNNNSLSGK---IPRWLGNLT 395
                NL  L+ L L  N L+     Q L  C  L  L L  NSL  +     R    L 
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 396 GLKHII 401
            +  I+
Sbjct: 118 SVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 8e-05
 Identities = 30/153 (19%), Positives = 48/153 (31%), Gaps = 37/153 (24%)

Query: 496 LILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFET 555
           L L H +L   V   L +L  +  LDLS+N L    P       L     +  +L+  + 
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 556 SLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQ-IGNL 614
              +  +                                 L L  N+L      Q + + 
Sbjct: 61  VANLPRLQE-------------------------------LLLCNNRLQQSAAIQPLVSC 89

Query: 615 TRIQTLNLSHNNLT---GLIPSTFSNLKHIESL 644
            R+  LNL  N+L    G+       L  + S+
Sbjct: 90  PRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 9e-05
 Identities = 32/126 (25%), Positives = 44/126 (34%), Gaps = 6/126 (4%)

Query: 228 RQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALD 287
           R L+L +  LT      +     +  LD+S+N  +   P      L  L     S N   
Sbjct: 1   RVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPPALAA--LRCLEVLQASDN--A 54

Query: 288 SSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLT 347
                   N+  LQ L L NN+L         VSC  L  L L  N+L      +     
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 348 NLRSLQ 353
            L S+ 
Sbjct: 115 MLPSVS 120

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 6/109 (5%)

Query: 422 QILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNG 481
           ++L ++  +++  L      L +  + LS N L              L  L  S N L  
Sbjct: 1   RVLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRAL--PPALAALRCLEVLQASDNALEN 57

Query: 482 SIPNWVDGLSQLSHLILGHNNLEG-EVPVQLCELNQLQLLDLSNNNLHG 529
                     Q   L+L +N L+       L    +L LL+L  N+L  
Sbjct: 58  VDGVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 5e-04
 Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 24/105 (22%)

Query: 596 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPS---------------------T 634
           L L+   L   +   +  L  +  L+LSHN L  L P+                      
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 635 FSNLKHIESLDLSYNKLNG-KIPHQLVELKTLAVFSVAYNNLSGE 678
            +NL  ++ L L  N+L        LV    L + ++  N+L  E
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 30/164 (18%), Positives = 60/164 (36%), Gaps = 3/164 (1%)

Query: 288 SSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLT 347
             IP           L L++N+L     + L     +L  L L  N L G   +     +
Sbjct: 21  KEIPRDIPLH--TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS 78

Query: 348 NLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHL 407
           +++ LQL  N ++    +       L+ L L +N +S  +P    +L  L  + +  N  
Sbjct: 79  HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138

Query: 408 EGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSK 451
                + +   +  +   ++        PS    + I+ +  S+
Sbjct: 139 NCNCHLAWFAEWLRK-KSLNGGAARCGAPSKVRDVQIKDLPHSE 181

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 24/159 (15%), Positives = 48/159 (30%), Gaps = 5/159 (3%)

Query: 225 TKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMN 284
               +L L ++ L       +              N    I     +    +    +  N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 285 ALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNF 344
            +       F  ++ L+ L+L +NQ++  +P        +L  L L++N    +     F
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE-HLNSLTSLNLASNPFNCNCHLAWF 147

Query: 345 NLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSL 383
               LR   L G       P  +      +   L ++  
Sbjct: 148 -AEWLRKKSLNGGAARCGAPSKVRDVQIKD---LPHSEF 182

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 3e-06
 Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 3/114 (2%)

Query: 593 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN-LTGLIPSTFSNLKHIESLDLSYNKL 651
            SGL  + +  +      +     +  L + +   L  L       L  + +L +  + L
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 652 NGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL 705
               P        L+  ++++N L   +   T Q  +  E    GN   C   L
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCAL 121

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 5e-05
 Identities = 25/149 (16%), Positives = 48/149 (32%), Gaps = 2/149 (1%)

Query: 347 TNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPR-WLGNLTGLKHIIMPEN 405
                L+   +    +    L    +L  LY+ N      +    L  L  L+++ + ++
Sbjct: 8   HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 406 HLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFH 465
            L    P  F     L  L++S N +          LS++++ LS N LH          
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQR 126

Query: 466 CSSLVTLDLSYNRLNGSIPNWVDGLSQLS 494
                   +   +L       +  +   S
Sbjct: 127 WEEEGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 4e-04
 Identities = 19/148 (12%), Positives = 44/148 (29%), Gaps = 3/148 (2%)

Query: 300 LQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHL 359
              L  + +    +   HL  +    E    +  +L+         L  LR+L +  + L
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 360 EGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVG-FCQL 418
               P +      L  L L+ N+L   +         L+ +++  N L     +    + 
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRW 127

Query: 419 YSLQILDISDNNISGSLPSCFHPLSIEQ 446
               +  + +  +          +    
Sbjct: 128 EEEGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 22/120 (18%), Positives = 32/120 (26%)

Query: 288 SSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLT 347
                       L  L + N Q    +          L  L +  + L+           
Sbjct: 21  LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80

Query: 348 NLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHL 407
            L  L L  N LE    +++   S  E +   N        RWL          +PE  L
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKL 140

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 27/188 (14%), Positives = 61/188 (32%), Gaps = 16/188 (8%)

Query: 467 SSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNN 526
           +  +   L    +  ++      L Q++ L      ++    V+   LN L  ++ SNN 
Sbjct: 18  AEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIKSIDGVE--YLNNLTQINFSNNQ 73

Query: 527 LHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQ 586
           L    P       +    NN+        + + +   +        + +           
Sbjct: 74  LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 133

Query: 587 GKVLSLLSGLDLSCNKLIGHI----------PPQIGNLTRIQTLNLSHNNLTGLIPSTFS 636
               + +S +                        + NLT ++ L++S N ++ +  S  +
Sbjct: 134 ELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDI--SVLA 191

Query: 637 NLKHIESL 644
            L ++ESL
Sbjct: 192 KLTNLESL 199

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 5e-04
 Identities = 21/139 (15%), Positives = 42/139 (30%), Gaps = 7/139 (5%)

Query: 304 DLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEI 363
           +L   Q+  E  + +     +    AL    L                L    + +   +
Sbjct: 3   ELKPEQV--EQLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNR-RSSMAATL 57

Query: 364 PQSLSKCSSLEGLYLNNNSLSGK--IPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSL 421
                    L  L L+NN L     +   +     LK + +  N L+    +   +   L
Sbjct: 58  RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKL 117

Query: 422 QILDISDNNISGSLPSCFH 440
           + L +  N++S +      
Sbjct: 118 EELWLDGNSLSDTFRDQST 136

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 9e-04
 Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 10/145 (6%)

Query: 279 FNISMNALDSS---IPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNL 335
           ++ S  ALD             N   +L+  ++         +  +   L  L LSNN L
Sbjct: 20  YDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAA--TLRIIEENIPELLSLNLSNNRL 77

Query: 336 KGHMFSRNF--NLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGN 393
                  +      NL+ L L GN L+ E      K   LE L+L+ NSLS         
Sbjct: 78  YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY 137

Query: 394 LTGLKHIIMPENHLEG---PIPVGF 415
           ++ ++        L+G   P P+ F
Sbjct: 138 ISAIRERFPKLLRLDGHELPPPIAF 162

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.004
 Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 5/128 (3%)

Query: 411 IPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLV 470
           + +   + Y      +    +  S P          ++   +M      R    +   L+
Sbjct: 12  LKLIMSKRYDGSQQALDLKGLR-SDPDLVAQNIDVVLNRRSSMAA--TLRIIEENIPELL 68

Query: 471 TLDLSYNRLNG--SIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLH 528
           +L+LS NRL     + + V     L  L L  N L+ E  +   +  +L+ L L  N+L 
Sbjct: 69  SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128

Query: 529 GPIPPCFD 536
                   
Sbjct: 129 DTFRDQST 136

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 10/165 (6%)

Query: 346 LTNLRSLQLEGNHLEGEIP------QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKH 399
             ++ + + E   L G IP       +LS   + + L L+ N++  KI   L  +  L+ 
Sbjct: 17  RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRI 74

Query: 400 IIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLK 459
           + +  N            +           N   SL      +++  +++S N +    +
Sbjct: 75  LSLGRNL--IKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGE 132

Query: 460 RGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLE 504
                    L  L L+ N L                ++    NL+
Sbjct: 133 IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	788
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.8
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.75
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.73
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.69
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.59
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.52
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.48
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.44
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.43
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.37
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.27
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.2
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.14
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.1
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.08
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.04
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.77
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.59
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.36

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=2.8e-29  Score=259.11  Aligned_cols=259  Identities=35%  Similarity=0.578  Sum_probs=209.3

Q ss_pred             CCCEEEccCCcCCC--CCcccccCCCCCCEEeCCC-CcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEE
Q 003888          372 SLEGLYLNNNSLSG--KIPRWLGNLTGLKHIIMPE-NHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVH  448 (788)
Q Consensus       372 ~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~  448 (788)
                      +++.|+|+++.+.+  .+|..++++++|++|++++ |.+.+.+|..+.++++|++|++++|++.+..             
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~-------------  117 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI-------------  117 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC-------------
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccc-------------
Confidence            45666666666654  2456666667777777765 5666667777777777777777777765322             


Q ss_pred             ccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCC-CEEEccCCcC
Q 003888          449 LSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQL-QLLDLSNNNL  527 (788)
Q Consensus       449 l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-~~L~Ls~n~i  527 (788)
                                +. .+..++.|+.+++++|.+.+.+|..+..+++++.+++++|.+.+.+|..+..+..+ +.+++++|++
T Consensus       118 ----------~~-~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         118 ----------PD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ----------CG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             ----------cc-cccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccc
Confidence                      22 25667788888888888887888888888889999999998888888888887775 7888899888


Q ss_pred             CCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccC
Q 003888          528 HGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHI  607 (788)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  607 (788)
                      ++..|..+...                                                     ....++++++...+.+
T Consensus       187 ~~~~~~~~~~l-----------------------------------------------------~~~~l~l~~~~~~~~~  213 (313)
T d1ogqa_         187 TGKIPPTFANL-----------------------------------------------------NLAFVDLSRNMLEGDA  213 (313)
T ss_dssp             EEECCGGGGGC-----------------------------------------------------CCSEEECCSSEEEECC
T ss_pred             ccccccccccc-----------------------------------------------------cccccccccccccccc
Confidence            77666544332                                                     3456899999999999


Q ss_pred             cccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCCcccccC
Q 003888          608 PPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFA  687 (788)
Q Consensus       608 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~  687 (788)
                      |..+..+++++.+++++|.+.+.++ .+..+++|+.|++++|++++.+|+.+.++++|++|++++|+++|.+|+ +..+.
T Consensus       214 ~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~  291 (313)
T d1ogqa_         214 SVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQ  291 (313)
T ss_dssp             GGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGG
T ss_pred             ccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCC
Confidence            9999999999999999999987655 688899999999999999999999999999999999999999999997 47889


Q ss_pred             CCCccccCCCCCCCCCCCCCCC
Q 003888          688 TFNESSYEGNTFLCGLPLPICR  709 (788)
Q Consensus       688 ~~~~~~~~gn~~~c~~~l~~c~  709 (788)
                      +++.+++.||+.+|+.|++.|.
T Consensus       292 ~L~~l~l~~N~~l~g~plp~c~  313 (313)
T d1ogqa_         292 RFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             GSCGGGTCSSSEEESTTSSCCC
T ss_pred             CCCHHHhCCCccccCCCCCCCC
Confidence            9999999999999999998884

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=2.5e-26  Score=244.78  Aligned_cols=342  Identities=24%  Similarity=0.305  Sum_probs=199.4

Q ss_pred             cCCCCCEEEcCCCcccccCccCcCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCE
Q 003888          223 NNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQI  302 (788)
Q Consensus       223 ~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~  302 (788)
                      .+.+|++|+++++.+++.  ..+..+++|++|++++|+++ .++.  ...+++|++|++++|.+.+..  .++++++|+.
T Consensus        42 ~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~~--l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~  114 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTG  114 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCE
T ss_pred             HhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCcc--ccCCccccccccccccccccc--cccccccccc
Confidence            345566666666665542  23445555666666666555 2321  222555666666666555332  2555566666


Q ss_pred             EEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCc
Q 003888          303 LDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNS  382 (788)
Q Consensus       303 L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~  382 (788)
                      |+++++.++ .++...  ....+.......+.+......................     ....+.............|.
T Consensus       115 L~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  186 (384)
T d2omza2         115 LTLFNNQIT-DIDPLK--NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT-----DLKPLANLTTLERLDISSNK  186 (384)
T ss_dssp             EECCSSCCC-CCGGGT--TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC-----CCGGGTTCTTCCEEECCSSC
T ss_pred             ccccccccc-cccccc--ccccccccccccccccccccccccccccccccccccc-----hhhhhccccccccccccccc
Confidence            666555554 222221  2344555555555444332222211111111111111     11122333333333443333


Q ss_pred             CCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCccc
Q 003888          383 LSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGT  462 (788)
Q Consensus       383 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  462 (788)
                      ..  ....+..+++++.+++++|.+.+..+  +..+++|++|++++|.++                       . ++  .
T Consensus       187 ~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~-----------------------~-~~--~  236 (384)
T d2omza2         187 VS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-----------------------D-IG--T  236 (384)
T ss_dssp             CC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-----------------------C-CG--G
T ss_pred             cc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCC-----------------------C-cc--h
Confidence            32  22334444555555555555544322  233445555555555443                       2 11  2


Q ss_pred             ccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCccccc
Q 003888          463 FFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE  542 (788)
Q Consensus       463 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  542 (788)
                      +..+++|+.|++++|.+++..+  +..+++|++|+++++++++..  .+..++.++.+++++|.+.+..  .+       
T Consensus       237 l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~~--~~-------  303 (384)
T d2omza2         237 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS--PI-------  303 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCG--GG-------
T ss_pred             hhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC--cccccccccccccccccccccc--cc-------
Confidence            6677888888888888875433  677888888888888887543  3677888888888888776321  11       


Q ss_pred             ccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeC
Q 003888          543 SSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL  622 (788)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  622 (788)
                                                                   ..++.++.|++++|++++..  .+..+++|++|++
T Consensus       304 ---------------------------------------------~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L  336 (384)
T d2omza2         304 ---------------------------------------------SNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFF  336 (384)
T ss_dssp             ---------------------------------------------GGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEEC
T ss_pred             ---------------------------------------------chhcccCeEECCCCCCCCCc--ccccCCCCCEEEC
Confidence                                                         11457888999999988653  3788899999999


Q ss_pred             CCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCC
Q 003888          623 SHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYN  673 (788)
Q Consensus       623 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N  673 (788)
                      ++|+++++  ..++++++|++|++++|++++..|  +.++++|+.|++++|
T Consensus       337 ~~n~l~~l--~~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         337 ANNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CSSCCCCC--GGGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCCCC--hhHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            99999864  368889999999999999986654  788899999999887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1e-25  Score=240.02  Aligned_cols=354  Identities=24%  Similarity=0.296  Sum_probs=221.3

Q ss_pred             CCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCC
Q 003888           29 ARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSN  108 (788)
Q Consensus        29 ~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n  108 (788)
                      ....+++.+..  . .+.+|++|+++++.+    ..+.  ++..+++|++|+|++|++++. | .++++++|++|++++|
T Consensus        30 ~~~~~~~~~~~--~-~l~~l~~L~l~~~~I----~~l~--gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n   98 (384)
T d2omza2          30 GKTNVTDTVSQ--T-DLDQVTTLQADRLGI----KSID--GVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNN   98 (384)
T ss_dssp             TCSSTTSEECH--H-HHTTCCEEECCSSCC----CCCT--TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSS
T ss_pred             CCCCCCCccCH--H-HhCCCCEEECCCCCC----CCcc--ccccCCCCCEEeCcCCcCCCC-c-cccCCccccccccccc
Confidence            55555555432  2 566888888888888    3443  577888888888888888854 3 3888888888888888


Q ss_pred             cCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCccccccccccccCCCCcccccEEEccCCCCC
Q 003888          109 QLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAEITESHSLTAPNFQLQALSLSSGYGD  188 (788)
Q Consensus       109 ~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  188 (788)
                      .+. .++.  ++++++|++|+++++.+++..   .......+.......+.+.........   ..........      
T Consensus        99 ~i~-~i~~--l~~l~~L~~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~------  163 (384)
T d2omza2          99 QIA-DITP--LANLTNLTGLTLFNNQITDID---PLKNLTNLNRLELSSNTISDISALSGL---TSLQQLSFGN------  163 (384)
T ss_dssp             CCC-CCGG--GTTCTTCCEEECCSSCCCCCG---GGTTCTTCSEEEEEEEEECCCGGGTTC---TTCSEEEEEE------
T ss_pred             ccc-cccc--ccccccccccccccccccccc---ccccccccccccccccccccccccccc---cccccccccc------
Confidence            887 5654  788888888888888776432   234455666666665554432211110   0001111111      


Q ss_pred             CCCcCccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCCCCccEEEcccCcCcccCChh
Q 003888          189 GVTFPKFLYHQHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVE  268 (788)
Q Consensus       189 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~  268 (788)
                      .......+.............+....  ... ...+++++.+++++|.+++..+  ...+++|++|++++|.++ .++ .
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~-~~~-~  236 (384)
T d2omza2         164 QVTDLKPLANLTTLERLDISSNKVSD--ISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIG-T  236 (384)
T ss_dssp             SCCCCGGGTTCTTCCEEECCSSCCCC--CGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCG-G
T ss_pred             ccchhhhhcccccccccccccccccc--ccc-cccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCC-Ccc-h
Confidence            01112223334444444444443322  111 2467777777777777776433  345667777777777776 333 2


Q ss_pred             hhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCC
Q 003888          269 IGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTN  348 (788)
Q Consensus       269 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~  348 (788)
                      + ..+++|+.|++++|.+++..+  +..+++|++|++++++++ .++.  +..++.++.++++.|.+++.  ..+..+++
T Consensus       237 l-~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~-~~~~--~~~~~~l~~l~~~~n~l~~~--~~~~~~~~  308 (384)
T d2omza2         237 L-ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISP--LAGLTALTNLELNENQLEDI--SPISNLKN  308 (384)
T ss_dssp             G-GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCSCC--GGGGGCTT
T ss_pred             h-hcccccchhccccCccCCCCc--ccccccCCEeeccCcccC-CCCc--cccccccccccccccccccc--cccchhcc
Confidence            2 236777777777777765432  667777777777777776 4443  22467777777777777653  23556677


Q ss_pred             CCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccC
Q 003888          349 LRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISD  428 (788)
Q Consensus       349 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  428 (788)
                      ++.|++++|++++..  .+..+++|++|++++|++++ ++ .+.++++|++|++++|++++..|  +.++++|+.|++++
T Consensus       309 l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~  382 (384)
T d2omza2         309 LTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND  382 (384)
T ss_dssp             CSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCC
T ss_pred             cCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCC
Confidence            777777777777442  36677777777777777763 22 46677777777777777775543  66777777777776


Q ss_pred             C
Q 003888          429 N  429 (788)
Q Consensus       429 n  429 (788)
                      |
T Consensus       383 N  383 (384)
T d2omza2         383 Q  383 (384)
T ss_dssp             E
T ss_pred             C
Confidence            5

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=7.1e-27  Score=240.92  Aligned_cols=251  Identities=30%  Similarity=0.475  Sum_probs=182.4

Q ss_pred             CCCCEEeccCCcCCC--cCCccccCCCCCCEEEccC-CcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccE
Q 003888          347 TNLRSLQLEGNHLEG--EIPQSLSKCSSLEGLYLNN-NSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQI  423 (788)
Q Consensus       347 ~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  423 (788)
                      .+++.|+++++.+++  .+|..++++++|++|++++ |.+.+.+|..++++++|++|++++|++.+..+..+..+..|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            356677777777665  3567777777777777775 6676677777777777777777777777777777777777777


Q ss_pred             EEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCC-CEEEccCCc
Q 003888          424 LDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQL-SHLILGHNN  502 (788)
Q Consensus       424 L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~  502 (788)
                      +++++|.+.+..                       |.. +..++.++.+++++|.+.+.+|..+..+.++ +.+++++|+
T Consensus       130 l~l~~N~~~~~~-----------------------p~~-l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~  185 (313)
T d1ogqa_         130 LDFSYNALSGTL-----------------------PPS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             EECCSSEEESCC-----------------------CGG-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             cccccccccccC-----------------------chh-hccCcccceeecccccccccccccccccccccccccccccc
Confidence            777777665332                       222 5566777777777777776777767666664 677777777


Q ss_pred             CccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccce
Q 003888          503 LEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIA  582 (788)
Q Consensus       503 l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  582 (788)
                      +++..+..+..+..+ .++++++...+.+|..+..                                             
T Consensus       186 l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~---------------------------------------------  219 (313)
T d1ogqa_         186 LTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGS---------------------------------------------  219 (313)
T ss_dssp             EEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCT---------------------------------------------
T ss_pred             ccccccccccccccc-ccccccccccccccccccc---------------------------------------------
Confidence            777777666665443 6777777766655544433                                             


Q ss_pred             eeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCC
Q 003888          583 YIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL  662 (788)
Q Consensus       583 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  662 (788)
                             ++.++.+++++|.+.+.+| .++.+++|+.|+|++|++++.+|+.|+++++|++|+|++|+++|.+|+ +.++
T Consensus       220 -------~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L  290 (313)
T d1ogqa_         220 -------DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNL  290 (313)
T ss_dssp             -------TSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTG
T ss_pred             -------ccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccC
Confidence                   3467788888888876544 677788888888888888888888888888899999999988888884 4778


Q ss_pred             CCCCEEEccCCcCc
Q 003888          663 KTLAVFSVAYNNLS  676 (788)
Q Consensus       663 ~~L~~L~l~~N~l~  676 (788)
                      ++|+.+++++|+..
T Consensus       291 ~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         291 QRFDVSAYANNKCL  304 (313)
T ss_dssp             GGSCGGGTCSSSEE
T ss_pred             CCCCHHHhCCCccc
Confidence            88888888888743

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=2.7e-24  Score=220.62  Aligned_cols=204  Identities=24%  Similarity=0.312  Sum_probs=139.0

Q ss_pred             CCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEcc
Q 003888          300 LQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLN  379 (788)
Q Consensus       300 L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~  379 (788)
                      .+.++-++..++ .+|..+   .+++++|++++|+|+.+.+..|.++++|++|++++|.+....|.+|.++++|+.|+++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCC-ccCCCC---CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            556666676676 677654   2567778888887777766677777888888888888876667778888888888888


Q ss_pred             CCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccC
Q 003888          380 NNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLK  459 (788)
Q Consensus       380 ~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  459 (788)
                      +|+++. +|..+  ...++.|++.+|.+....+..+.....+..++...+....                      ....
T Consensus        88 ~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~----------------------~~~~  142 (305)
T d1xkua_          88 KNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS----------------------SGIE  142 (305)
T ss_dssp             SSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG----------------------GGBC
T ss_pred             CCccCc-Cccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccc----------------------cCCC
Confidence            887763 34322  3567788888887776666666666777777776664321                      1111


Q ss_pred             cccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCC
Q 003888          460 RGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCF  535 (788)
Q Consensus       460 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~  535 (788)
                      ...+..+++|+.+++++|.+.. +|..  .+++|++|++++|..+...+..|.+++.++.|++++|.+.+..+..+
T Consensus       143 ~~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~  215 (305)
T d1xkua_         143 NGAFQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL  215 (305)
T ss_dssp             TTGGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG
T ss_pred             ccccccccccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccc
Confidence            2236667778888888887763 3332  24677788888877777777777777777777777776665444443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-24  Score=220.88  Aligned_cols=228  Identities=23%  Similarity=0.288  Sum_probs=146.7

Q ss_pred             ccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEcc-CCcCccccCcccCCCCCCCEEEc
Q 003888          444 IEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILG-HNNLEGEVPVQLCELNQLQLLDL  522 (788)
Q Consensus       444 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~l~~l~~L~~L~L  522 (788)
                      +++|++++|.+ ..++..+|.++++|++|++++|++....+..+..++.++.+... .+.++...+..|.++++|++|++
T Consensus        34 ~~~L~Ls~N~i-~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          34 SQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             CSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEECcCCcC-CCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            34444444443 23444446666777777777777766666666666666666553 44555555666777777777777


Q ss_pred             cCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCc
Q 003888          523 SNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNK  602 (788)
Q Consensus       523 s~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~  602 (788)
                      ++|.+....+..+..                                                    .++|+.+++++|.
T Consensus       113 ~~n~~~~~~~~~~~~----------------------------------------------------~~~L~~l~l~~N~  140 (284)
T d1ozna_         113 DRCGLQELGPGLFRG----------------------------------------------------LAALQYLYLQDNA  140 (284)
T ss_dssp             TTSCCCCCCTTTTTT----------------------------------------------------CTTCCEEECCSSC
T ss_pred             CCcccccccccccch----------------------------------------------------hcccchhhhcccc
Confidence            777665444433332                                                    2366777777777


Q ss_pred             ccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCCc
Q 003888          603 LIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEW  682 (788)
Q Consensus       603 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~  682 (788)
                      ++++.+..|..+++|+.|++++|+++++.+..|.++++|+++++++|++++..|..|..+++|++|++++|++.+..|.+
T Consensus       141 l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~  220 (284)
T d1ozna_         141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA  220 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH
T ss_pred             ccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccc
Confidence            77666666777777777777777777766677777777777777777777666777777777777777777777666666


Q ss_pred             ccccCCCCccccCCCCCCCCCCCC----------------CCCCCCCCCcccCCCCCC
Q 003888          683 TAQFATFNESSYEGNTFLCGLPLP----------------ICRSPATMSEASIGNERD  724 (788)
Q Consensus       683 ~~~~~~~~~~~~~gn~~~c~~~l~----------------~c~~~~~~~~~~~~~~~~  724 (788)
                      +..+..+..+++.|||+.|+|+..                .|..|....+..+.....
T Consensus       221 ~~~~~~L~~L~l~~N~l~C~C~~~~l~~~l~~~~~~~~~~~C~~p~~l~g~~l~~l~~  278 (284)
T d1ozna_         221 LAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAA  278 (284)
T ss_dssp             HTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCG
T ss_pred             cccccccCEEEecCCCCCCCccchHHHHHHHhCcCCCCceEeCCchHHcCCccccCCH
Confidence            666666777777777777777542                466666666654444433

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=5.7e-23  Score=210.62  Aligned_cols=249  Identities=23%  Similarity=0.314  Sum_probs=140.3

Q ss_pred             ccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEc
Q 003888          251 LRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLAL  330 (788)
Q Consensus       251 L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L  330 (788)
                      .+.+|-++..++ .+|..+.   +++++|++++|+++...+.+|.++++|++|++++|.+.                   
T Consensus        12 ~~~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-------------------   68 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-------------------   68 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-------------------
T ss_pred             CCEEEecCCCCC-ccCCCCC---CCCCEEECcCCcCCCcChhHhhcccccccccccccccc-------------------
Confidence            445555555555 5554432   35555555555555444444555555555555555554                   


Q ss_pred             cCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCccc--
Q 003888          331 SNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLE--  408 (788)
Q Consensus       331 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~--  408 (788)
                            .+.+..|.++++|++|++++|+++ .+|..  ....++.|++.+|.+....+..+.....++.+....+...  
T Consensus        69 ------~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~  139 (305)
T d1xkua_          69 ------KISPGAFAPLVKLERLYLSKNQLK-ELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS  139 (305)
T ss_dssp             ------CBCTTTTTTCTTCCEEECCSSCCS-BCCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG
T ss_pred             ------ccchhhhhCCCccCEecccCCccC-cCccc--hhhhhhhhhccccchhhhhhhhhhcccccccccccccccccc
Confidence                  444444444444444444444444 22221  1234455555555554444444444455555555544322  


Q ss_pred             CCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCcccc
Q 003888          409 GPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVD  488 (788)
Q Consensus       409 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  488 (788)
                      ...+..+..+++|+.+++++|.+.......  .++++.|++++|......+. .|..++.++.|++++|.+++..+.++.
T Consensus       140 ~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~--~~~L~~L~l~~n~~~~~~~~-~~~~~~~l~~L~~s~n~l~~~~~~~~~  216 (305)
T d1xkua_         140 GIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISAVDNGSLA  216 (305)
T ss_dssp             GBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred             CCCccccccccccCccccccCCccccCccc--CCccCEEECCCCcCCCCChh-Hhhcccccccccccccccccccccccc
Confidence            122334555666666666666655332211  34555555555555444443 377778888888888888777777778


Q ss_pred             CCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCC
Q 003888          489 GLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCF  535 (788)
Q Consensus       489 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~  535 (788)
                      ++++|++|+|++|+++ .+|.++..+++|++|++++|+++......|
T Consensus       217 ~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f  262 (305)
T d1xkua_         217 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF  262 (305)
T ss_dssp             GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             ccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhc
Confidence            8888888888888887 446677788888888888888775544444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.8e-24  Score=216.73  Aligned_cols=253  Identities=23%  Similarity=0.254  Sum_probs=142.9

Q ss_pred             EeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcC
Q 003888          352 LQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNI  431 (788)
Q Consensus       352 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  431 (788)
                      ++.++++++ .+|..+.  +.+++|+|++|.++...+..|.++++|++|++++|.+....+..+..+..++.++...+..
T Consensus        16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            344444444 3343332  3455566666655544444555555555555555555554444455555555554432211


Q ss_pred             CCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCccc
Q 003888          432 SGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQL  511 (788)
Q Consensus       432 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  511 (788)
                      .                       ..++...|.++++|++|++++|.+....+..+..+++|+.+++++|+++++.+..|
T Consensus        93 ~-----------------------~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f  149 (284)
T d1ozna_          93 L-----------------------RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF  149 (284)
T ss_dssp             C-----------------------CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             c-----------------------ccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHh
Confidence            1                       22333335666667777777666665555556666667777777777665555666


Q ss_pred             CCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccc
Q 003888          512 CELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLS  591 (788)
Q Consensus       512 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  591 (788)
                      ..+++|+.|++++|++.+..+..|..                                                    ++
T Consensus       150 ~~~~~L~~L~l~~N~l~~l~~~~f~~----------------------------------------------------l~  177 (284)
T d1ozna_         150 RDLGNLTHLFLHGNRISSVPERAFRG----------------------------------------------------LH  177 (284)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTT----------------------------------------------------CT
T ss_pred             ccccchhhcccccCcccccchhhhcc----------------------------------------------------cc
Confidence            66666666666666666555544443                                                    23


Q ss_pred             cccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEcc
Q 003888          592 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVA  671 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  671 (788)
                      +|+.+++++|++++..|..|..+++|++|++++|++.+..+..|+.+++|++|++++|++.+..+.. .-...++.+...
T Consensus       178 ~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l~~~~~~  256 (284)
T d1ozna_         178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGS  256 (284)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSE
T ss_pred             ccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccch-HHHHHHHhCcCC
Confidence            5666666666666666666666666666666666666666666666666666666666666543311 111233444455


Q ss_pred             CCcCcccCCCcc
Q 003888          672 YNNLSGEIPEWT  683 (788)
Q Consensus       672 ~N~l~~~~p~~~  683 (788)
                      .+++.|..|..+
T Consensus       257 ~~~~~C~~p~~l  268 (284)
T d1ozna_         257 SSEVPCSLPQRL  268 (284)
T ss_dssp             ECCCBEEESGGG
T ss_pred             CCceEeCCchHH
Confidence            556666555443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1e-22  Score=203.62  Aligned_cols=112  Identities=27%  Similarity=0.304  Sum_probs=65.3

Q ss_pred             cccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEcc
Q 003888          592 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVA  671 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  671 (788)
                      .|+.|++++|.+.+..+..+..+.++++|++++|.++.+.+..+..+++|+.+++++|++++..+..|..+++|++|+++
T Consensus       101 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls  180 (266)
T d1p9ag_         101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ  180 (266)
T ss_dssp             TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             ccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecc
Confidence            55555555555555555555555666666666666655555555555666666666666655555555556666666666


Q ss_pred             CCcCcccCCCcccccCCCCccccCCCCCCCCCC
Q 003888          672 YNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP  704 (788)
Q Consensus       672 ~N~l~~~~p~~~~~~~~~~~~~~~gn~~~c~~~  704 (788)
                      +|+|+ .+|+.+..+..+..+++.||||.|+|.
T Consensus       181 ~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         181 ENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             SSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             cCCCc-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence            66655 445444455555556666666666664

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.6e-21  Score=192.18  Aligned_cols=180  Identities=27%  Similarity=0.300  Sum_probs=151.3

Q ss_pred             CccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEc
Q 003888          443 SIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDL  522 (788)
Q Consensus       443 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  522 (788)
                      +++.|++++|.+. .++..+|.++++|++|++++|+++.. + .+..+++|++|++++|+++. .+..+..+++|+.|++
T Consensus        32 ~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          32 DTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCC-CcCHHHhhcccccccccccccccccc-c-cccccccccccccccccccc-cccccccccccccccc
Confidence            3444444444442 45555588999999999999999843 3 35788999999999999984 5667899999999999


Q ss_pred             cCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCc
Q 003888          523 SNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNK  602 (788)
Q Consensus       523 s~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~  602 (788)
                      ++|.+.+..+..+..                                                    +.+++.|++++|.
T Consensus       108 ~~~~~~~~~~~~~~~----------------------------------------------------l~~l~~L~l~~n~  135 (266)
T d1p9ag_         108 SFNRLTSLPLGALRG----------------------------------------------------LGELQELYLKGNE  135 (266)
T ss_dssp             CSSCCCCCCSSTTTT----------------------------------------------------CTTCCEEECTTSC
T ss_pred             cccccceeecccccc----------------------------------------------------ccccccccccccc
Confidence            999988665555443                                                    4489999999999


Q ss_pred             ccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccC
Q 003888          603 LIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEI  679 (788)
Q Consensus       603 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~  679 (788)
                      +....+..+..+++|+.|++++|+++++.++.|+.+++|++|+|++|+|+ .+|+.+..+++|+.|++++|++.|..
T Consensus       136 l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC  211 (266)
T d1p9ag_         136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (266)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             cceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCc
Confidence            99888888999999999999999999999999999999999999999998 78888889999999999999998753

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.80  E-value=4.5e-17  Score=170.04  Aligned_cols=57  Identities=28%  Similarity=0.281  Sum_probs=31.6

Q ss_pred             ccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcC
Q 003888          463 FFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNL  527 (788)
Q Consensus       463 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i  527 (788)
                      +..++.|+.+++++|.... .+   ....++..+.+.++.+... +   ...+.+...++..+.+
T Consensus       200 ~~~l~~L~~l~l~~n~~~~-~~---~~~~~l~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~  256 (353)
T d1jl5a_         200 LQNLPFLTTIYADNNLLKT-LP---DLPPSLEALNVRDNYLTDL-P---ELPQSLTFLDVSENIF  256 (353)
T ss_dssp             CTTCTTCCEEECCSSCCSS-CC---SCCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCC
T ss_pred             ccccccccccccccccccc-cc---ccccccccccccccccccc-c---cccccccccccccccc
Confidence            4456677777777776542 22   2235566777777766522 1   1234555666655544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=1.5e-16  Score=165.95  Aligned_cols=303  Identities=27%  Similarity=0.300  Sum_probs=146.1

Q ss_pred             CCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEec
Q 003888          275 SLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQL  354 (788)
Q Consensus       275 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  354 (788)
                      ++++|+++++.++. +|+.   .++|++|++++|+++ .+|..    ..+|++|++++|+++.+..  +  .+.|++|++
T Consensus        39 ~l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~-~lp~~----~~~L~~L~l~~n~l~~l~~--l--p~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLKALSD--L--PPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSCCCS--C--CTTCCEEEC
T ss_pred             CCCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCc-ccccc----hhhhhhhhhhhcccchhhh--h--ccccccccc
Confidence            44555555555542 3321   344555555555555 45432    3355555555555543221  1  134566666


Q ss_pred             cCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCC
Q 003888          355 EGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGS  434 (788)
Q Consensus       355 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  434 (788)
                      ++|.+. .+|. ++.+++|+.|+++++.+... +.   ....+..+.+..+....  ...+..++.++.+++++|.....
T Consensus       106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~~~  177 (353)
T d1jl5a_         106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLKKL  177 (353)
T ss_dssp             CSSCCS-SCCC-CTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSSC
T ss_pred             cccccc-cccc-hhhhccceeecccccccccc-cc---ccccccchhhccccccc--cccccccccceeccccccccccc
Confidence            666655 3332 35556666666666555422 11   12344555554443331  23344555556666655544321


Q ss_pred             CCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCC
Q 003888          435 LPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCEL  514 (788)
Q Consensus       435 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  514 (788)
                      ..                            .....+.+...++.+. ..+ .+..++.|+.+++++|.... .+   ...
T Consensus       178 ~~----------------------------~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-~~---~~~  223 (353)
T d1jl5a_         178 PD----------------------------LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LP---DLP  223 (353)
T ss_dssp             CC----------------------------CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CC---SCC
T ss_pred             cc----------------------------cccccccccccccccc-ccc-cccccccccccccccccccc-cc---ccc
Confidence            11                            0122334455544443 222 24567777888887776653 22   234


Q ss_pred             CCCCEEEccCCcCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeeccccccccc
Q 003888          515 NQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLS  594 (788)
Q Consensus       515 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  594 (788)
                      .++..+.+.++.+.... ...............                                 ...+  ........
T Consensus       224 ~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~---------------------------------~~~l--~~l~~~~~  267 (353)
T d1jl5a_         224 PSLEALNVRDNYLTDLP-ELPQSLTFLDVSENI---------------------------------FSGL--SELPPNLY  267 (353)
T ss_dssp             TTCCEEECCSSCCSCCC-CCCTTCCEEECCSSC---------------------------------CSEE--SCCCTTCC
T ss_pred             ccccccccccccccccc-ccccccccccccccc---------------------------------cccc--ccccchhc
Confidence            56777777777665322 111111100000000                                 0000  00012334


Q ss_pred             EEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCc
Q 003888          595 GLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNN  674 (788)
Q Consensus       595 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~  674 (788)
                      ..++..+.+.+.    ...+++|++|+|++|+|+.+ |.   .+++|+.|++++|+|+ .+|..   +++|++|++++|+
T Consensus       268 ~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~~l-p~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~  335 (353)
T d1jl5a_         268 YLNASSNEIRSL----CDLPPSLEELNVSNNKLIEL-PA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNP  335 (353)
T ss_dssp             EEECCSSCCSEE----CCCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSC
T ss_pred             ccccccCccccc----cccCCCCCEEECCCCccCcc-cc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCc
Confidence            455555555422    22346677777777777643 32   2466777777777776 45532   3567777777777


Q ss_pred             CcccCCC
Q 003888          675 LSGEIPE  681 (788)
Q Consensus       675 l~~~~p~  681 (788)
                      ++ .+|.
T Consensus       336 L~-~lp~  341 (353)
T d1jl5a_         336 LR-EFPD  341 (353)
T ss_dssp             CS-SCCC
T ss_pred             CC-CCCc
Confidence            66 3443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.3e-20  Score=203.19  Aligned_cols=382  Identities=21%  Similarity=0.144  Sum_probs=205.2

Q ss_pred             CccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcCCC----CCcccccCCCCCCEEEcccCcCCCccchHHHh----c
Q 003888          250 WLRFLDVSNNNFQGHIPVEIGDILPSLISFNISMNALDS----SIPSSFGNMNFLQILDLSNNQLTGEIPEHLAV----S  321 (788)
Q Consensus       250 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~----~  321 (788)
                      +|++||++++++++..-..+...++++++|+|++|.++.    .+...+..+++|++|++++|.+++.....+..    .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            467777877777654334444556788888888887763    23345677788888888888775222222222    2


Q ss_pred             CCCCCEEEccCccCCCcC----cccCcCCCCCCEEeccCCcCCCcCCcc----cc-CCCCCCEEEccCCcCCCCC----c
Q 003888          322 CVNLEFLALSNNNLKGHM----FSRNFNLTNLRSLQLEGNHLEGEIPQS----LS-KCSSLEGLYLNNNSLSGKI----P  388 (788)
Q Consensus       322 l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~----l~-~l~~L~~L~L~~n~i~~~~----~  388 (788)
                      ..+|++|++++|++++..    +..+..+++|++|++++|.+.......    +. ...................    .
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            246788888877776532    234556777888888777765321111    11 1122334444333332111    0


Q ss_pred             ccccCCCCCCEEeCCCCcccCCcc----ccc-cCCCCccEEEccCCcCCCCCCC-----CCCCCCccEEEccCcccccc-
Q 003888          389 RWLGNLTGLKHIIMPENHLEGPIP----VGF-CQLYSLQILDISDNNISGSLPS-----CFHPLSIEQVHLSKNMLHGQ-  457 (788)
Q Consensus       389 ~~~~~l~~L~~L~l~~n~~~~~~~----~~~-~~l~~L~~L~l~~n~~~~~~~~-----~~~~~~L~~L~l~~n~~~~~-  457 (788)
                      ..+...+.++.+.++++.......    ..+ ..-.....+++..+.+......     ......++.+.+.+|..... 
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~  242 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  242 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence            122334567777777665442111    011 1123445666666654321110     01134566666666654221 


Q ss_pred             ---cCcccccCCCCCcEEEccCCcCCCCC----CccccCCCCCCEEEccCCcCccccCcc-----cCCCCCCCEEEccCC
Q 003888          458 ---LKRGTFFHCSSLVTLDLSYNRLNGSI----PNWVDGLSQLSHLILGHNNLEGEVPVQ-----LCELNQLQLLDLSNN  525 (788)
Q Consensus       458 ---~~~~~~~~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~-----l~~l~~L~~L~Ls~n  525 (788)
                         ...........++.+++++|.+....    ...+...+.++.+++++|.++......     ......|+.+++++|
T Consensus       243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~  322 (460)
T d1z7xw1         243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  322 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc
Confidence               11112334566777777777665321    123344667777777777765322211     123456777777777


Q ss_pred             cCCCCCCCCCcCcccccccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccc
Q 003888          526 NLHGPIPPCFDNTTLHESSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG  605 (788)
Q Consensus       526 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  605 (788)
                      .+.......+...                                                ....++|++|+|++|++++
T Consensus       323 ~l~~~~~~~l~~~------------------------------------------------~~~~~~L~~L~Ls~N~i~~  354 (460)
T d1z7xw1         323 SFTAACCSHFSSV------------------------------------------------LAQNRFLLELQISNNRLED  354 (460)
T ss_dssp             CCBGGGHHHHHHH------------------------------------------------HHHCSSCCEEECCSSBCHH
T ss_pred             chhhhhhhhcccc------------------------------------------------cccccchhhhheeeecccC
Confidence            6542110000000                                                0113468888888888764


Q ss_pred             c----Cccccc-CcccCCeEeCCCCcCCcc----CCccccCCCCCCEEECcCCcccccCCccc----c-CCCCCCEEEcc
Q 003888          606 H----IPPQIG-NLTRIQTLNLSHNNLTGL----IPSTFSNLKHIESLDLSYNKLNGKIPHQL----V-ELKTLAVFSVA  671 (788)
Q Consensus       606 ~----~~~~l~-~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l----~-~l~~L~~L~l~  671 (788)
                      .    ++..+. ..+.|++|+|++|.|++.    +++.+..+++|++|+|++|+++......+    . +...|+.|++.
T Consensus       355 ~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~  434 (460)
T d1z7xw1         355 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLY  434 (460)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             cccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECC
Confidence            3    222232 356688888888888753    23445566888888888888765333222    2 23468888888


Q ss_pred             CCcCcccC
Q 003888          672 YNNLSGEI  679 (788)
Q Consensus       672 ~N~l~~~~  679 (788)
                      +|++....
T Consensus       435 ~~~~~~~~  442 (460)
T d1z7xw1         435 DIYWSEEM  442 (460)
T ss_dssp             TCCCCHHH
T ss_pred             CCCCCHHH
Confidence            88776433

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=6.6e-20  Score=199.53  Aligned_cols=113  Identities=22%  Similarity=0.287  Sum_probs=76.0

Q ss_pred             CccEEEcccCCcccccch-hHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCC----Chhh
Q 003888           20 SLDHLDMVFARTALNTSF-LQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSL----PWCL   94 (788)
Q Consensus        20 ~L~~L~L~~~~~~~~~~~-~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~l   94 (788)
                      +|+.||+  +++++++.. .+.+. .++++++|+|++|.+++.+....+.++..+++|++|+|++|++++..    ...+
T Consensus         3 ~l~~ld~--~~~~i~~~~~~~l~~-~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           3 DIQSLDI--QCEELSDARWAELLP-LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEE--ESCCCCHHHHHHHHH-HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCEEEe--eCCcCChHHHHHHHH-hCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            5788888  888887654 33344 78888899999888742111111234678888888888888876432    2222


Q ss_pred             c-CCCCCCEEECCCCcCcCc----CChhhhcCCCCCCEEECcCcccc
Q 003888           95 A-NMTSLRILDVSSNQLTGS----ISSSPLVHLTSIEELMLSNNHFQ  136 (788)
Q Consensus        95 ~-~l~~L~~L~Ls~n~~~~~----i~~~~l~~l~~L~~L~Ls~n~l~  136 (788)
                      . ..++|++|+|++|++++.    ++. .+..+++|++|++++|.+.
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~-~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCH
T ss_pred             hcCCCCCCEEECCCCCccccccccccc-hhhccccccccccccccch
Confidence            2 235788888888888632    222 4667888888888888765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=5.6e-18  Score=159.42  Aligned_cols=177  Identities=24%  Similarity=0.281  Sum_probs=134.5

Q ss_pred             CcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCcc-ccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccCCC
Q 003888          469 LVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEG-EVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSNNS  547 (788)
Q Consensus       469 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~~  547 (788)
                      .+.++.++++++ .+|..+.  +++++|+|++|+|+. ..+..|.++++|+.|++++|.+.+..+..|..          
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~----------   76 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG----------   76 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT----------
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccc----------
Confidence            457888888887 4565443  678889999998875 44666788889999999998888777766655          


Q ss_pred             CCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCCcC
Q 003888          548 YSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL  627 (788)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l  627 (788)
                                                                ++.|++|+|++|++.+..|..|.++++|++|+|++|+|
T Consensus        77 ------------------------------------------~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l  114 (192)
T d1w8aa_          77 ------------------------------------------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI  114 (192)
T ss_dssp             ------------------------------------------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCC
T ss_pred             ------------------------------------------ccccceeeeccccccccCHHHHhCCCcccccccCCccc
Confidence                                                      34788889999998888888899999999999999999


Q ss_pred             CccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEccCCcCcccCCCcccccCCCCccccCCCCCCCCCC
Q 003888          628 TGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLP  704 (788)
Q Consensus       628 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~gn~~~c~~~  704 (788)
                      +++.+++|..+++|++|+|++|++.+..+..+ -...++.+.+..|.+++..|..+   ......++..|.+.|.++
T Consensus       115 ~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p~~l---~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         115 SCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             CEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSSTTT---TTSBGGGSCTTTCCCCCC
T ss_pred             cccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeEeCCChhh---cCCEeeecCHhhCcCCCC
Confidence            98888889999999999999998875443221 12345666777888888777643   344556777788877654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.5e-17  Score=163.53  Aligned_cols=78  Identities=22%  Similarity=0.078  Sum_probs=46.3

Q ss_pred             cccEEECCCCcccccCcccccCcccCCe-EeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEc
Q 003888          592 LLSGLDLSCNKLIGHIPPQIGNLTRIQT-LNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSV  670 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~-L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  670 (788)
                      .++.|++++|+++...+..+. .+++++ +++++|+++.+.++.|.++++|++|++++|+++...+..|.+++.|+++++
T Consensus       154 ~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         154 ESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             SCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             cceeeeccccccccccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            455666666666644444333 334333 345666777666666777777777777777776544445555555555444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=5.6e-17  Score=157.27  Aligned_cols=74  Identities=18%  Similarity=0.334  Sum_probs=37.6

Q ss_pred             cccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEcc
Q 003888          592 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSVA  671 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  671 (788)
                      +|+.|++++|.+.+.  ..++++++|++|+|++|+++++  ..++++++|++|++++|++++..  .+.++++|++|+++
T Consensus       152 ~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         152 NLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             ccccccccccccccc--hhhcccccceecccCCCccCCC--hhhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence            344444444444322  1245555555566655555543  22555566666666666655332  24555666666554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=5.7e-17  Score=152.41  Aligned_cols=134  Identities=24%  Similarity=0.367  Sum_probs=114.1

Q ss_pred             ccccEEECCCCcccc-cCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEE
Q 003888          591 SLLSGLDLSCNKLIG-HIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFS  669 (788)
Q Consensus       591 ~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  669 (788)
                      +++++|+|++|+|++ ..+..|.++++|++|+|++|+++...+..|..+++|++|++++|+|+...|..|.++++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            478899999999976 4466788999999999999999999889999999999999999999988888899999999999


Q ss_pred             ccCCcCcccCCCcccccCCCCccccCCCCCCCCCCCC----------------CCCCCCCCCcccCCCCCC
Q 003888          670 VAYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPLP----------------ICRSPATMSEASIGNERD  724 (788)
Q Consensus       670 l~~N~l~~~~p~~~~~~~~~~~~~~~gn~~~c~~~l~----------------~c~~~~~~~~~~~~~~~~  724 (788)
                      +++|+|++..|++|..+.++..+++.+|++.|+|+..                .|..|...++..+.....
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p~~l~~~~l~~L~~  179 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPH  179 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTTSBGGGSCT
T ss_pred             cCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCChhhcCCEeeecCH
Confidence            9999999888888888899999999999999988643                588887776665444433

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=2.8e-16  Score=152.25  Aligned_cols=205  Identities=21%  Similarity=0.278  Sum_probs=136.3

Q ss_pred             cEEEcccCcCCCCCcccccCCCCCCEEEcccCcCCCccchHHHhcCCCCCEEEccCccCCCcCcccCcCCCCCCEEeccC
Q 003888          277 ISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLTGEIPEHLAVSCVNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEG  356 (788)
Q Consensus       277 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~  356 (788)
                      ..++++.+++++..  .++.+.+|+.|++.+|.++ .++ .+ ..+++|++|++++|.+++..+  +..+++++++++++
T Consensus        22 ~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~-~l~-~l-~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~   94 (227)
T d1h6ua2          22 IKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GV-QYLNNLIGLELKDNQITDLAP--LKNLTKITELELSG   94 (227)
T ss_dssp             HHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TG-GGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCS
T ss_pred             HHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCC-cch-hH-hcCCCCcEeecCCceeecccc--cccccccccccccc
Confidence            34455556665432  3455667777777777776 553 23 357777777777777766432  56677777777777


Q ss_pred             CcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEccCCcCCCCCC
Q 003888          357 NHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDISDNNISGSLP  436 (788)
Q Consensus       357 n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  436 (788)
                      |.++. + ..+.++++|+.++++++...+.  ..+...+.++.+.++++.+...  ..+..+++|++|++++|.+.+   
T Consensus        95 n~~~~-i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~---  165 (227)
T d1h6ua2          95 NPLKN-V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSD---  165 (227)
T ss_dssp             CCCSC-C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCC---
T ss_pred             ccccc-c-cccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhcccccccccccccccccc---
Confidence            76663 2 2466677777777777665432  2345556666777766665533  234556666666666665542   


Q ss_pred             CCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCC
Q 003888          437 SCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQ  516 (788)
Q Consensus       437 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  516 (788)
                                          ..   .++++++|+.|++++|++++. + .+.++++|++|++++|++++..  .+.++++
T Consensus       166 --------------------~~---~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~  218 (227)
T d1h6ua2         166 --------------------LT---PLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVS--PLANTSN  218 (227)
T ss_dssp             --------------------CG---GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTT
T ss_pred             --------------------ch---hhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCc--ccccCCC
Confidence                                11   167788999999999998853 3 3788999999999999998553  3888999


Q ss_pred             CCEEEccC
Q 003888          517 LQLLDLSN  524 (788)
Q Consensus       517 L~~L~Ls~  524 (788)
                      |+.|++++
T Consensus       219 L~~L~lsn  226 (227)
T d1h6ua2         219 LFIVTLTN  226 (227)
T ss_dssp             CCEEEEEE
T ss_pred             CCEEEeeC
Confidence            99999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=7.8e-17  Score=158.24  Aligned_cols=219  Identities=19%  Similarity=0.161  Sum_probs=136.3

Q ss_pred             CEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcc
Q 003888          203 EDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNNNFQGHIPVEIGDILPSLISFNIS  282 (788)
Q Consensus       203 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~  282 (788)
                      +.++.++.+++ .+|..+   .+++++|++++|.++...+.+|.++++|++|++++|.+.+.++...+..+++++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l---~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCS---CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCC---CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            45555555544 455443   24677888888887766666777788888888888877656666666667777877765


Q ss_pred             c-CcCCCCCcccccCCCCCCEEEcccCcCCCccch-HHHhcCCCCCEEEccCccCCCcCcccCcCCC-CCCEEeccCCcC
Q 003888          283 M-NALDSSIPSSFGNMNFLQILDLSNNQLTGEIPE-HLAVSCVNLEFLALSNNNLKGHMFSRNFNLT-NLRSLQLEGNHL  359 (788)
Q Consensus       283 ~-n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~i~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l  359 (788)
                      . +.+....+..|.++++|+++++++|.+. ..+. .....+..+..+...++.+..+....+.+++ .++.+++++|++
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~-~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l  165 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  165 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCC-SCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             ccccccccccccccccccccccccchhhhc-ccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence            4 5666666667778888888888888776 3333 2222344455555566666666555555543 566777777777


Q ss_pred             CCcCCccccCCCCCCEE-EccCCcCCCCCcccccCCCCCCEEeCCCCcccCCccccccCCCCccEEEcc
Q 003888          360 EGEIPQSLSKCSSLEGL-YLNNNSLSGKIPRWLGNLTGLKHIIMPENHLEGPIPVGFCQLYSLQILDIS  427 (788)
Q Consensus       360 ~~~~~~~l~~l~~L~~L-~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  427 (788)
                      +...+..+ ...+++++ .+++|.++...+..|.++++|++|++++|+++...+..|.++++|+.+++.
T Consensus       166 ~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         166 QEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             CEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             cccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            64433333 33444444 345566664444556667777777777777765545555555555555443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1.8e-15  Score=142.90  Aligned_cols=142  Identities=31%  Similarity=0.475  Sum_probs=90.4

Q ss_pred             ccCCCCCcEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCccccc
Q 003888          463 FFHCSSLVTLDLSYNRLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE  542 (788)
Q Consensus       463 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  542 (788)
                      ++.+++|++|++++|++++..+  +.++++|++|++++|.+....  .+.+++.|+.|++++|.+....+  +.      
T Consensus        58 l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~--~~------  125 (199)
T d2omxa2          58 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDP--LK------  125 (199)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGG--GT------
T ss_pred             cccCCCcCcCccccccccCccc--ccCCccccccccccccccccc--ccccccccccccccccccccccc--cc------
Confidence            4556677777777777664332  666777777777777665332  36667777777777766543211  11      


Q ss_pred             ccCCCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeC
Q 003888          543 SSNNSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL  622 (788)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  622 (788)
                                                                    .+++|+.|++++|++.. ++ .+..+++|++|++
T Consensus       126 ----------------------------------------------~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l  157 (199)
T d2omxa2         126 ----------------------------------------------NLTNLNRLELSSNTISD-IS-ALSGLTSLQQLNF  157 (199)
T ss_dssp             ----------------------------------------------TCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEEC
T ss_pred             ----------------------------------------------hhhhhHHhhhhhhhhcc-cc-ccccccccccccc
Confidence                                                          13467777777777653 22 4667777777777


Q ss_pred             CCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEE
Q 003888          623 SHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVF  668 (788)
Q Consensus       623 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  668 (788)
                      ++|+++++  ..++++++|++|++++|++++ ++ .+..+++|+.|
T Consensus       158 ~~n~l~~l--~~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         158 SSNQVTDL--KPLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             ccccccCC--ccccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            77777765  346777777777777777764 33 46677777664

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1.9e-15  Score=143.99  Aligned_cols=115  Identities=23%  Similarity=0.369  Sum_probs=69.0

Q ss_pred             CCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCC
Q 003888           29 ARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSN  108 (788)
Q Consensus        29 ~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n  108 (788)
                      ....+++.+..  . .+.+|++|++++|.+    ..++  ++..+++|++|++++|++++. + .++++++|++|++++|
T Consensus        32 ~~~~~~~~~~~--~-~L~~L~~L~l~~~~i----~~l~--~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n  100 (210)
T d1h6ta2          32 KKKSVTDAVTQ--N-ELNSIDQIIANNSDI----KSVQ--GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDEN  100 (210)
T ss_dssp             TCSCTTSEECH--H-HHHTCCEEECTTSCC----CCCT--TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSS
T ss_pred             CcCccCCccCH--H-HhcCccEEECcCCCC----CCch--hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccc
Confidence            44445444432  1 345677777777766    3333  356677777777777777643 2 3566777777777777


Q ss_pred             cCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCccc
Q 003888          109 QLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEI  160 (788)
Q Consensus       109 ~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~  160 (788)
                      +++ .+|.  +.++++|++|++++|.+.. +  ..+.++++++.+++++|.+
T Consensus       101 ~i~-~l~~--l~~l~~L~~L~l~~~~~~~-~--~~l~~l~~l~~l~~~~n~l  146 (210)
T d1h6ta2         101 KVK-DLSS--LKDLKKLKSLSLEHNGISD-I--NGLVHLPQLESLYLGNNKI  146 (210)
T ss_dssp             CCC-CGGG--GTTCTTCCEEECTTSCCCC-C--GGGGGCTTCCEEECCSSCC
T ss_pred             ccc-cccc--ccccccccccccccccccc-c--ccccccccccccccccccc
Confidence            776 5553  6667777777777766542 1  2455566666666655544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=2.1e-15  Score=143.64  Aligned_cols=164  Identities=25%  Similarity=0.366  Sum_probs=94.0

Q ss_pred             CCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeC
Q 003888          323 VNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIM  402 (788)
Q Consensus       323 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  402 (788)
                      .+|++|++++|.++...  .+..+++|++|++++|++++..  .++.+++|+.|++++|++++ ++ .+..+++|+.|++
T Consensus        46 ~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred             cCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-ccccccccccccc
Confidence            35555555555555432  2445556666666666655322  24556666666666666653 22 3555666666666


Q ss_pred             CCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCC
Q 003888          403 PENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGS  482 (788)
Q Consensus       403 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  482 (788)
                      ++|.+...  ..+..++.++.+++++|.+++..                          .+..+++|+.+++++|++++.
T Consensus       120 ~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~~--------------------------~~~~l~~L~~l~l~~n~l~~i  171 (210)
T d1h6ta2         120 EHNGISDI--NGLVHLPQLESLYLGNNKITDIT--------------------------VLSRLTKLDTLSLEDNQISDI  171 (210)
T ss_dssp             TTSCCCCC--GGGGGCTTCCEEECCSSCCCCCG--------------------------GGGGCTTCSEEECCSSCCCCC
T ss_pred             cccccccc--ccccccccccccccccccccccc--------------------------ccccccccccccccccccccc
Confidence            66655432  23555666666666666554210                          134556677777777776643


Q ss_pred             CCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccC
Q 003888          483 IPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSN  524 (788)
Q Consensus       483 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  524 (788)
                      .  .+.++++|++|++++|++++. + .+.++++|+.|++++
T Consensus       172 ~--~l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         172 V--PLAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             G--GGTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEE
T ss_pred             c--cccCCCCCCEEECCCCCCCCC-h-hhcCCCCCCEEEccC
Confidence            2  266677777777777777632 3 467777777777653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=3.6e-15  Score=140.71  Aligned_cols=160  Identities=24%  Similarity=0.278  Sum_probs=76.9

Q ss_pred             CCCCEEEccCccCCCcCcccCcCCCCCCEEeccCCcCCCcCCccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEeC
Q 003888          323 VNLEFLALSNNNLKGHMFSRNFNLTNLRSLQLEGNHLEGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTGLKHIIM  402 (788)
Q Consensus       323 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  402 (788)
                      +++++|++++|.++.+  ..+..+++|++|++++|++++..  .+.++++|++|++++|.+... + .+.+++.|+.|++
T Consensus        40 ~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~l  113 (199)
T d2omxa2          40 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLTL  113 (199)
T ss_dssp             TTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEEC
T ss_pred             cCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCcccccccccccccccc-c-ccccccccccccc
Confidence            3444444444444432  22334455555555555554322  145555555555555554422 1 2445555555555


Q ss_pred             CCCcccCCccccccCCCCccEEEccCCcCCCCCCCCCCCCCccEEEccCcccccccCcccccCCCCCcEEEccCCcCCCC
Q 003888          403 PENHLEGPIPVGFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHGQLKRGTFFHCSSLVTLDLSYNRLNGS  482 (788)
Q Consensus       403 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  482 (788)
                      ++|.....  ..+..+++|+.|++++|.+...                        +  .+..+++|+.|++++|++++.
T Consensus       114 ~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~------------------------~--~l~~~~~L~~L~l~~n~l~~l  165 (199)
T d2omxa2         114 FNNQITDI--DPLKNLTNLNRLELSSNTISDI------------------------S--ALSGLTSLQQLNFSSNQVTDL  165 (199)
T ss_dssp             CSSCCCCC--GGGTTCTTCSEEECCSSCCCCC------------------------G--GGTTCTTCSEEECCSSCCCCC
T ss_pred             cccccccc--cccchhhhhHHhhhhhhhhccc------------------------c--cccccccccccccccccccCC
Confidence            55554432  2244555555555555544311                        1  134445555555555555532


Q ss_pred             CCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEE
Q 003888          483 IPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLL  520 (788)
Q Consensus       483 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  520 (788)
                      .  .+.++++|++|++++|++++.  ..+..+++|+.|
T Consensus       166 ~--~l~~l~~L~~L~ls~N~i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         166 K--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             G--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             c--cccCCCCCCEEECCCCCCCCC--ccccCCCCCCcC
Confidence            1  255556666666666665532  135555555543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.2e-15  Score=152.91  Aligned_cols=249  Identities=17%  Similarity=0.174  Sum_probs=155.6

Q ss_pred             cEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcC-CChhhcCCCCC
Q 003888           22 DHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGS-LPWCLANMTSL  100 (788)
Q Consensus        22 ~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L  100 (788)
                      +.+||  +++.+.......+. . .....+.+++....   ..+.  ......+|++||+++|.++.. +...+.++++|
T Consensus         3 ~~lDL--s~~~l~~~~l~~l~-~-~~~~~lrl~~~~~~---~~~~--~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L   73 (284)
T d2astb2           3 QTLDL--TGKNLHPDVTGRLL-S-QGVIAFRCPRSFMD---QPLA--EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL   73 (284)
T ss_dssp             SEEEC--TTCBCCHHHHHHHH-H-TTCSEEECTTCEEC---SCCC--SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred             CEEEC--CCCCCCchHHHHHH-h-ccceEeeccccccc---cchh--hhccCCCCCEEECCCCccCHHHHHHHHHhCCCc
Confidence            47889  88877655444444 2 24567777776553   2221  244567899999999988754 45567889999


Q ss_pred             CEEECCCCcCcCcCChhhhcCCCCCCEEECcCcc-ccccCCccccccCCCCcEEEccCcc-ccccccccccCCCCccccc
Q 003888          101 RILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH-FQIPISLEPLFNHSRLKIFDAANNE-IKAEITESHSLTAPNFQLQ  178 (788)
Q Consensus       101 ~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~L~  178 (788)
                      ++|++++|.+++..+. .+..+++|++|++++|. ++.........++++|++|+++++. +++..              
T Consensus        74 ~~L~L~~~~l~~~~~~-~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~--------------  138 (284)
T d2astb2          74 QNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH--------------  138 (284)
T ss_dssp             SEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH--------------
T ss_pred             ccccccccCCCcHHHH-HHhcCCCCcCccccccccccccccchhhHHHHhcccccccccccccccc--------------
Confidence            9999999998755555 78889999999999964 4321111124578999999998864 22110              


Q ss_pred             EEEccCCCCCCCCcCccc-cCCCCCCEEEcCCCc--CCCCCchhHhhcCCCCCEEEcCCC-cccccCccCcCCCCCccEE
Q 003888          179 ALSLSSGYGDGVTFPKFL-YHQHDLEDVRLSHVN--MDGEFPNWLLENNTKLRQLYLVND-SLTGPFRLPIHSHRWLRFL  254 (788)
Q Consensus       179 ~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~--~~~~~~~~~~~~l~~L~~L~L~~~-~l~~~~~~~l~~~~~L~~L  254 (788)
                                   +...+ ..++.|+.|+++++.  +++.....+...+++|++|++++| .+++.....+..+++|++|
T Consensus       139 -------------~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         139 -------------VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             -------------HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             -------------chhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence                         01111 123567777777652  333333344456777888888775 3666666667777778888


Q ss_pred             EcccC-cCcccCChhhhhcCCCCcEEEcccCcCCCCCcccccCCCCCCEEEcccCcCC
Q 003888          255 DVSNN-NFQGHIPVEIGDILPSLISFNISMNALDSSIPSSFGNMNFLQILDLSNNQLT  311 (788)
Q Consensus       255 ~L~~n-~i~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~  311 (788)
                      ++++| .+++.....+.+ +|+|+.|++++|.-.+........+|+|+   +..+.++
T Consensus       206 ~L~~C~~i~~~~l~~L~~-~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls  259 (284)
T d2astb2         206 SLSRCYDIIPETLLELGE-IPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFT  259 (284)
T ss_dssp             ECTTCTTCCGGGGGGGGG-CTTCCEEECTTSSCTTCHHHHHHHSTTSE---ESCCCSC
T ss_pred             ECCCCCCCChHHHHHHhc-CCCCCEEeeeCCCCHHHHHHHHHhCcccc---ccCccCC
Confidence            88774 455544444444 67888888877622222222223455554   3445555

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.6e-15  Score=151.96  Aligned_cols=183  Identities=21%  Similarity=0.218  Sum_probs=105.7

Q ss_pred             CCCCCEEEcCCCcCCCCCchhHhhcCCCCCEEEcCCCcccccCccCcCCCCCccEEEcccC-cCcccCChhhhhcCCCCc
Q 003888          199 QHDLEDVRLSHVNMDGEFPNWLLENNTKLRQLYLVNDSLTGPFRLPIHSHRWLRFLDVSNN-NFQGHIPVEIGDILPSLI  277 (788)
Q Consensus       199 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~n-~i~~~~~~~~~~~l~~L~  277 (788)
                      ..+|++|+++++.+.+.....++..+++|++|+++++.+++.....+..+++|++|+++++ .+++..-..+...+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            3467777777777666555556677788888888888777666666777778888888775 344322223344567788


Q ss_pred             EEEcccCc-CCCC-Ccccc-cCCCCCCEEEcccC--cCCCccchHHHhcCCCCCEEEccCc-cCCCcCcccCcCCCCCCE
Q 003888          278 SFNISMNA-LDSS-IPSSF-GNMNFLQILDLSNN--QLTGEIPEHLAVSCVNLEFLALSNN-NLKGHMFSRNFNLTNLRS  351 (788)
Q Consensus       278 ~L~L~~n~-~~~~-~~~~~-~~l~~L~~L~l~~n--~i~~~i~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~  351 (788)
                      +|++++|. ++.. ....+ ...++|+.|+++++  .+++..-..+...+++|++|++++| .+++.....+..+++|++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~  204 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  204 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCE
Confidence            88887763 3321 11122 22456777777654  2332222233345666666666664 345444445555556666


Q ss_pred             EeccCC-cCCCcCCccccCCCCCCEEEccCC
Q 003888          352 LQLEGN-HLEGEIPQSLSKCSSLEGLYLNNN  381 (788)
Q Consensus       352 L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~n  381 (788)
                      |++++| .+++.....++++++|++|+++++
T Consensus       205 L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         205 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            666654 344333344445555555555544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=2.6e-14  Score=122.36  Aligned_cols=103  Identities=28%  Similarity=0.502  Sum_probs=60.6

Q ss_pred             cEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEE
Q 003888           49 KYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL  128 (788)
Q Consensus        49 ~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L  128 (788)
                      |+|++++|.+    ..++  .+.++++|++|++++|+++ .+|..++.+++|++|++++|.++ .+|.  +.++++|++|
T Consensus         1 R~L~Ls~n~l----~~l~--~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~~--~~~l~~L~~L   70 (124)
T d1dcea3           1 RVLHLAHKDL----TVLC--HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG--VANLPRLQEL   70 (124)
T ss_dssp             SEEECTTSCC----SSCC--CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEE
T ss_pred             CEEEcCCCCC----CCCc--ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccCc--cccccccCeE
Confidence            4566666666    3333  2556666666666666665 44555666666666666666665 4543  5666666666


Q ss_pred             ECcCccccccCCccccccCCCCcEEEccCcccc
Q 003888          129 MLSNNHFQIPISLEPLFNHSRLKIFDAANNEIK  161 (788)
Q Consensus       129 ~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~  161 (788)
                      ++++|++........++.+++|+++++++|++.
T Consensus        71 ~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          71 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             ECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ECCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            666666653333344566666666666666654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=8.6e-14  Score=124.61  Aligned_cols=112  Identities=16%  Similarity=0.185  Sum_probs=93.3

Q ss_pred             cccEEECCCCcccccCcccccCcccCCeEeCCCC-cCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEEEc
Q 003888          592 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHN-NLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVFSV  670 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  670 (788)
                      ..+.++.+++.+. ..|..+..+++|++|++++| .|+.+.++.|.++++|+.|++++|+|+...|.+|..+++|++|++
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            4556888888887 56778888999999999766 588888888999999999999999999888888999999999999


Q ss_pred             cCCcCcccCCCcccccCCCCccccCCCCCCCCCCC
Q 003888          671 AYNNLSGEIPEWTAQFATFNESSYEGNTFLCGLPL  705 (788)
Q Consensus       671 ~~N~l~~~~p~~~~~~~~~~~~~~~gn~~~c~~~l  705 (788)
                      ++|+++...++.+. ...+..+++.||||.|+|.+
T Consensus        88 s~N~l~~l~~~~~~-~~~l~~L~L~~Np~~C~C~~  121 (156)
T d2ifga3          88 SFNALESLSWKTVQ-GLSLQELVLSGNPLHCSCAL  121 (156)
T ss_dssp             CSSCCSCCCSTTTC-SCCCCEEECCSSCCCCCGGG
T ss_pred             cCCCCcccChhhhc-cccccccccCCCcccCCchH
Confidence            99999965555543 44688899999999999864

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=6.4e-14  Score=126.37  Aligned_cols=130  Identities=17%  Similarity=0.246  Sum_probs=105.7

Q ss_pred             CCCCCCCccEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChh
Q 003888           14 GFPHFKSLDHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWC   93 (788)
Q Consensus        14 ~l~~~~~L~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~   93 (788)
                      .+.+...++.|+|  ++|+++.. +..+. .+++|++||+++|.+    ..++  .|..+++|++|++++|+++...+..
T Consensus        13 ~~~n~~~lr~L~L--~~n~I~~i-~~~~~-~l~~L~~L~Ls~N~i----~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~   82 (162)
T d1a9na_          13 QYTNAVRDRELDL--RGYKIPVI-ENLGA-TLDQFDAIDFSDNEI----RKLD--GFPLLRRLKTLLVNNNRICRIGEGL   82 (162)
T ss_dssp             EEECTTSCEEEEC--TTSCCCSC-CCGGG-GTTCCSEEECCSSCC----CEEC--CCCCCSSCCEEECCSSCCCEECSCH
T ss_pred             hccCcCcCcEEEC--CCCCCCcc-Ccccc-ccccCCEEECCCCCC----CccC--CcccCcchhhhhcccccccCCCccc
Confidence            4678889999999  99998854 44445 889999999999999    5564  4889999999999999999766666


Q ss_pred             hcCCCCCCEEECCCCcCcCcCCh-hhhcCCCCCCEEECcCccccccCC--ccccccCCCCcEEE
Q 003888           94 LANMTSLRILDVSSNQLTGSISS-SPLVHLTSIEELMLSNNHFQIPIS--LEPLFNHSRLKIFD  154 (788)
Q Consensus        94 l~~l~~L~~L~Ls~n~~~~~i~~-~~l~~l~~L~~L~Ls~n~l~~~~~--~~~l~~l~~L~~L~  154 (788)
                      +..+++|++|++++|++. .++. ..+..+++|++|++++|.++....  ...++.+++|++||
T Consensus        83 ~~~l~~L~~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          83 DQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             HHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccccccccceecccccc-ccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            788999999999999997 6654 368889999999999998864321  12467889999886

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=8.7e-14  Score=125.47  Aligned_cols=77  Identities=19%  Similarity=0.199  Sum_probs=47.1

Q ss_pred             cccEEECCCCcccccCcccccCcccCCeEeCCCCcCCccCC-ccccCCCCCCEEECcCCcccccCCc----cccCCCCCC
Q 003888          592 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGLIP-STFSNLKHIESLDLSYNKLNGKIPH----QLVELKTLA  666 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~  666 (788)
                      +|+.|++++|++++..+..+..+++|++|++++|+|+.... ..+..+++|++|++++|+++. .|.    .+..+++|+
T Consensus        64 ~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~  142 (162)
T d1a9na_          64 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVR  142 (162)
T ss_dssp             SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCS
T ss_pred             chhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcC
Confidence            45555555555554444445566777777777777765422 456667777777777777763 332    456677777


Q ss_pred             EEE
Q 003888          667 VFS  669 (788)
Q Consensus       667 ~L~  669 (788)
                      +||
T Consensus       143 ~LD  145 (162)
T d1a9na_         143 VLD  145 (162)
T ss_dssp             EET
T ss_pred             eeC
Confidence            765

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=3.8e-13  Score=115.00  Aligned_cols=119  Identities=21%  Similarity=0.219  Sum_probs=97.1

Q ss_pred             cEEEcccCCcccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhhcCCCCCC
Q 003888           22 DHLDMVFARTALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCLANMTSLR  101 (788)
Q Consensus        22 ~~L~L~~~~~~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  101 (788)
                      |+|+|  ++|+++.. + .+. ++++|++|++++|.+    .++|+ +++.+++|++|++++|.+++. | .++++++|+
T Consensus         1 R~L~L--s~n~l~~l-~-~l~-~l~~L~~L~ls~N~l----~~lp~-~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~   68 (124)
T d1dcea3           1 RVLHL--AHKDLTVL-C-HLE-QLLLVTHLDLSHNRL----RALPP-ALAALRCLEVLQASDNALENV-D-GVANLPRLQ   68 (124)
T ss_dssp             SEEEC--TTSCCSSC-C-CGG-GGTTCCEEECCSSCC----CCCCG-GGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCC
T ss_pred             CEEEc--CCCCCCCC-c-ccc-cCCCCCEEECCCCcc----Ccchh-hhhhhhccccccccccccccc-C-ccccccccC
Confidence            68999  99999843 3 477 999999999999999    66775 799999999999999999854 4 599999999


Q ss_pred             EEECCCCcCcCcCCh-hhhcCCCCCCEEECcCcccccc--CCccccccCCCCcEE
Q 003888          102 ILDVSSNQLTGSISS-SPLVHLTSIEELMLSNNHFQIP--ISLEPLFNHSRLKIF  153 (788)
Q Consensus       102 ~L~Ls~n~~~~~i~~-~~l~~l~~L~~L~Ls~n~l~~~--~~~~~l~~l~~L~~L  153 (788)
                      +|++++|++. .++. ..++.+++|++|++++|+++..  ........+++|+.+
T Consensus        69 ~L~l~~N~i~-~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          69 ELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             EEECCSSCCC-SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             eEECCCCccC-CCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            9999999998 6653 4689999999999999998743  222334556777665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.43  E-value=3.3e-14  Score=147.06  Aligned_cols=97  Identities=23%  Similarity=0.261  Sum_probs=58.1

Q ss_pred             hHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcC----------CChhhcCCCCCCEEECCC
Q 003888           38 LQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGS----------LPWCLANMTSLRILDVSS  107 (788)
Q Consensus        38 ~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----------~~~~l~~l~~L~~L~Ls~  107 (788)
                      ...+. ....|+.|+|++|.++..+.......+...++|+.|+++++.....          +.+++..+++|++|+|++
T Consensus        24 ~~~L~-~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          24 FAVLL-EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             SHHHH-HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHh-hCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            44566 6778888888887764211111223455677888888877654321          223345667778888877


Q ss_pred             CcCcCc----CChhhhcCCCCCCEEECcCcccc
Q 003888          108 NQLTGS----ISSSPLVHLTSIEELMLSNNHFQ  136 (788)
Q Consensus       108 n~~~~~----i~~~~l~~l~~L~~L~Ls~n~l~  136 (788)
                      |.+...    +.. .+..+++|++|++++|.+.
T Consensus       103 n~i~~~~~~~l~~-~l~~~~~L~~L~l~~n~l~  134 (344)
T d2ca6a1         103 NAFGPTAQEPLID-FLSKHTPLEHLYLHNNGLG  134 (344)
T ss_dssp             CCCCTTTHHHHHH-HHHHCTTCCEEECCSSCCH
T ss_pred             cccccccccchhh-hhcccccchheeccccccc
Confidence            777522    222 3445677777777777654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.37  E-value=2.2e-13  Score=140.72  Aligned_cols=241  Identities=17%  Similarity=0.161  Sum_probs=132.2

Q ss_pred             cCccccCCCCCCEEEcCCCcCCCCCchhH---hhcCCCCCEEEcCCCccccc----------CccCcCCCCCccEEEccc
Q 003888          192 FPKFLYHQHDLEDVRLSHVNMDGEFPNWL---LENNTKLRQLYLVNDSLTGP----------FRLPIHSHRWLRFLDVSN  258 (788)
Q Consensus       192 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~l~~L~~L~L~~~~l~~~----------~~~~l~~~~~L~~L~L~~  258 (788)
                      +...+.+...+++|++++|.+.......+   +...++|+.++++++.....          +...+..+++|+.|++++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            34455667778888888777655433333   23456777777776543321          122345566777777777


Q ss_pred             CcCcccCChhh---hhcCCCCcEEEcccCcCCCCCcc-------------cccCCCCCCEEEcccCcCCCccchHH---H
Q 003888          259 NNFQGHIPVEI---GDILPSLISFNISMNALDSSIPS-------------SFGNMNFLQILDLSNNQLTGEIPEHL---A  319 (788)
Q Consensus       259 n~i~~~~~~~~---~~~l~~L~~L~L~~n~~~~~~~~-------------~~~~l~~L~~L~l~~n~i~~~i~~~~---~  319 (788)
                      |.+++.....+   ....++|++|++++|.+......             .....+.|+.+.+++|.+.......+   .
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l  182 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  182 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchh
Confidence            76654322222   12356777777777765421110             11345667777777776653222211   1


Q ss_pred             hcCCCCCEEEccCccCCCc-----CcccCcCCCCCCEEeccCCcCCCc----CCccccCCCCCCEEEccCCcCCCCCccc
Q 003888          320 VSCVNLEFLALSNNNLKGH-----MFSRNFNLTNLRSLQLEGNHLEGE----IPQSLSKCSSLEGLYLNNNSLSGKIPRW  390 (788)
Q Consensus       320 ~~l~~L~~L~L~~n~i~~~-----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~~  390 (788)
                      ..++.|++|++++|+++..     ....+..+++|+.|++++|.++..    +...+..+++|++|++++|.+++.....
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~  262 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  262 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             hhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHH
Confidence            2456777777777766542     122344566777777777766432    2234556667777777777665432222


Q ss_pred             ----cc--CCCCCCEEeCCCCcccCCcc----cccc-CCCCccEEEccCCcCC
Q 003888          391 ----LG--NLTGLKHIIMPENHLEGPIP----VGFC-QLYSLQILDISDNNIS  432 (788)
Q Consensus       391 ----~~--~l~~L~~L~l~~n~~~~~~~----~~~~-~l~~L~~L~l~~n~~~  432 (788)
                          +.  ..+.|++|++++|.+.....    ..+. +.+.|++|++++|.+.
T Consensus       263 l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence                22  23456777777776653221    2221 3556677777776664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.1e-11  Score=110.71  Aligned_cols=88  Identities=18%  Similarity=0.192  Sum_probs=73.5

Q ss_pred             cccccEEECCCC-cccccCcccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCccccCCCCCCEE
Q 003888          590 LSLLSGLDLSCN-KLIGHIPPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLAVF  668 (788)
Q Consensus       590 l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  668 (788)
                      +++|++|++++| .++.+.+.+|.++++|+.|++++|+|+.+.+.+|.++++|++|+|++|+|+...+..+. ...|+.|
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~-~~~l~~L  108 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ-GLSLQEL  108 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC-SCCCCEE
T ss_pred             ccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhc-ccccccc
Confidence            347788888765 47777778899999999999999999999899999999999999999999855455554 4579999


Q ss_pred             EccCCcCccc
Q 003888          669 SVAYNNLSGE  678 (788)
Q Consensus       669 ~l~~N~l~~~  678 (788)
                      ++++|++.+.
T Consensus       109 ~L~~Np~~C~  118 (156)
T d2ifga3         109 VLSGNPLHCS  118 (156)
T ss_dssp             ECCSSCCCCC
T ss_pred             ccCCCcccCC
Confidence            9999999763

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.20  E-value=2.1e-13  Score=127.63  Aligned_cols=149  Identities=21%  Similarity=0.253  Sum_probs=104.9

Q ss_pred             CCcEEEccCC--cCCCCCCccccCCCCCCEEEccCCcCccccCcccCCCCCCCEEEccCCcCCCCCCCCCcCcccccccC
Q 003888          468 SLVTLDLSYN--RLNGSIPNWVDGLSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESSN  545 (788)
Q Consensus       468 ~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~  545 (788)
                      ..+.+++.+.  .+. .++..+..+++|++|++++|+|+.. + .+..+++|+.|++++|++... |..+.         
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~~i-~~~~~---------   90 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKKI-ENLDA---------   90 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEECSC-SSHHH---------
T ss_pred             ccceeeeecccCchh-hhhhHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccccc-ccccc---------
Confidence            3445555543  232 3456677888899999999988843 3 577888899999999887632 21110         


Q ss_pred             CCCCCCCcccccccccccchhhhccccceeeeeccceeeecccccccccEEECCCCcccccCcccccCcccCCeEeCCCC
Q 003888          546 NSYSLKPFETSLVMDSMMIPAEKQIHENFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHN  625 (788)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~N  625 (788)
                                                                 .++.|+.|++++|+++..  ..+..+++|+.|++++|
T Consensus        91 -------------------------------------------~~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N  125 (198)
T d1m9la_          91 -------------------------------------------VADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNN  125 (198)
T ss_dssp             -------------------------------------------HHHHCCEEECSEEECCCH--HHHHHHHHSSEEEESEE
T ss_pred             -------------------------------------------cccccccccccccccccc--ccccccccccccccccc
Confidence                                                       134788999999988853  35788899999999999


Q ss_pred             cCCccCC-ccccCCCCCCEEECcCCcccccCCcc----------ccCCCCCCEEEccCCcCc
Q 003888          626 NLTGLIP-STFSNLKHIESLDLSYNKLNGKIPHQ----------LVELKTLAVFSVAYNNLS  676 (788)
Q Consensus       626 ~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~l~~N~l~  676 (788)
                      +|+.... ..+..+++|++|++++|++....+..          +..+++|+.||  +.+++
T Consensus       126 ~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         126 KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             ECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             hhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            9986532 46788899999999999887544432          56678888876  44444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.14  E-value=5.6e-13  Score=124.63  Aligned_cols=133  Identities=19%  Similarity=0.239  Sum_probs=103.4

Q ss_pred             CCCCccEEEcccCCc--ccccchhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcCCChhh
Q 003888           17 HFKSLDHLDMVFART--ALNTSFLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGSLPWCL   94 (788)
Q Consensus        17 ~~~~L~~L~L~~~~~--~~~~~~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l   94 (788)
                      .....+.+++  .+.  .+. .++.++. .+++|++|+|++|.+    ..++  .+.++++|++|+|++|.++ .+|..+
T Consensus        21 ~~~~~~~~~l--~~~~~~i~-~l~~sl~-~L~~L~~L~Ls~n~I----~~i~--~l~~l~~L~~L~Ls~N~i~-~i~~~~   89 (198)
T d1m9la_          21 VATEAEKVEL--HGMIPPIE-KMDATLS-TLKACKHLALSTNNI----EKIS--SLSGMENLRILSLGRNLIK-KIENLD   89 (198)
T ss_dssp             CCTTCSCEEC--CBCCTTCC-CCHHHHH-HTTTCCEEECSEEEE----SCCC--CHHHHTTCCEEECCEEEEC-SCSSHH
T ss_pred             cccccceeee--ecccCchh-hhhhHHh-cccccceeECcccCC----CCcc--cccCCccccChhhcccccc-cccccc
Confidence            3344566677  443  222 3567788 999999999999998    5554  4888999999999999988 456666


Q ss_pred             cCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCccccccCCccccccCCCCcEEEccCcccccc
Q 003888           95 ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPLFNHSRLKIFDAANNEIKAE  163 (788)
Q Consensus        95 ~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~  163 (788)
                      ..+++|++|++++|+++ .++.  +.++++|++|++++|.++.......+..+++|++|++++|++...
T Consensus        90 ~~~~~L~~L~l~~N~i~-~l~~--~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_          90 AVADTLEELWISYNQIA-SLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHHHHCCEEECSEEECC-CHHH--HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             ccccccccccccccccc-cccc--ccccccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence            66778999999999998 6654  888999999999999987433334688899999999999987653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=3.3e-07  Score=81.53  Aligned_cols=80  Identities=23%  Similarity=0.167  Sum_probs=46.5

Q ss_pred             cccccEEECCCCcccccC--cccccCcccCCeEeCCCCcCCccCCccccCCCCCCEEECcCCcccccCCc-------ccc
Q 003888          590 LSLLSGLDLSCNKLIGHI--PPQIGNLTRIQTLNLSHNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH-------QLV  660 (788)
Q Consensus       590 l~~L~~L~Ls~n~l~~~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-------~l~  660 (788)
                      ++.|++|+|++|+|+...  +..+..+++|+.|+|++|+|+...+-.+.....|++|++++|++......       .+.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            456777777777776432  23455667777777777777655432333344566777777776644332       134


Q ss_pred             CCCCCCEEE
Q 003888          661 ELKTLAVFS  669 (788)
Q Consensus       661 ~l~~L~~L~  669 (788)
                      .+|+|+.||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            566666554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=3.1e-07  Score=81.66  Aligned_cols=64  Identities=27%  Similarity=0.342  Sum_probs=32.3

Q ss_pred             CCCCCCEEEcCCCCCCcC--CChhhcCCCCCCEEECCCCcCcCcCChhhhcCCCCCCEEECcCcccc
Q 003888           72 SLMHLQELYIDNNDLRGS--LPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQ  136 (788)
Q Consensus        72 ~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls~n~~~~~i~~~~l~~l~~L~~L~Ls~n~l~  136 (788)
                      ++++|++|+|++|+++..  ++..+..+++|++|+|++|.++ .++.....+..+|++|++++|.+.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcC
Confidence            455555555555555532  2233455555555555555555 444322223345555556555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.04  E-value=1.6e-06  Score=77.41  Aligned_cols=66  Identities=14%  Similarity=0.147  Sum_probs=28.2

Q ss_pred             cCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcC----CChhhcCCCCCCEEECCCCc
Q 003888           44 SMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGS----LPWCLANMTSLRILDVSSNQ  109 (788)
Q Consensus        44 ~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~  109 (788)
                      ..++|++|+|++|.++..+.....+.+...+.|++|+|++|.+++.    +..++...+.|++|++++|.
T Consensus        42 ~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          42 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            4445555555555543211111122333344555555555554432    22233444445555554443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.77  E-value=3.4e-06  Score=75.13  Aligned_cols=120  Identities=21%  Similarity=0.259  Sum_probs=81.3

Q ss_pred             HHhhcCCCCcEEeCCCC-CCCCCCCCCCcccccCCCCCCEEEcCCCCCCcC----CChhhcCCCCCCEEECCCCcCcCc-
Q 003888           40 IIRESMPSLKYLSMSDS-TLGTNSSRILDQGLCSLMHLQELYIDNNDLRGS----LPWCLANMTSLRILDVSSNQLTGS-  113 (788)
Q Consensus        40 ~l~~~l~~L~~L~Ls~~-~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~~~~~-  113 (788)
                      .+....++|+.|+|+++ .++..+......++...++|++|+|++|.+...    +...+...+.|++|++++|.++.. 
T Consensus         9 ~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g   88 (167)
T d1pgva_           9 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL   88 (167)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             HHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHH
Confidence            34436789999999874 453111111123567788999999999998743    445567789999999999998732 


Q ss_pred             ---CChhhhcCCCCCCEEECcCcccccc--C----CccccccCCCCcEEEccCccc
Q 003888          114 ---ISSSPLVHLTSIEELMLSNNHFQIP--I----SLEPLFNHSRLKIFDAANNEI  160 (788)
Q Consensus       114 ---i~~~~l~~l~~L~~L~Ls~n~l~~~--~----~~~~l~~l~~L~~L~l~~n~~  160 (788)
                         +.. .+...+.|++|++++|.+...  -    -...+...++|++|+++.+..
T Consensus        89 ~~~l~~-aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          89 LARLLR-STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHH-HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHH-HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence               222 567778899999998865411  0    123455678888888876543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.59  E-value=7.1e-06  Score=73.04  Aligned_cols=42  Identities=21%  Similarity=0.197  Sum_probs=20.0

Q ss_pred             ccCCCCCCEEEcCCCCCCcC----CChhhcCCCCCCEEECCCCcCc
Q 003888           70 LCSLMHLQELYIDNNDLRGS----LPWCLANMTSLRILDVSSNQLT  111 (788)
Q Consensus        70 ~~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~~~  111 (788)
                      +...++|++|++++|.++..    +...+...+.++.+++++|.+.
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            33445555555555554432    2233344455555555555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.36  E-value=1.4e-05  Score=71.16  Aligned_cols=115  Identities=18%  Similarity=0.181  Sum_probs=80.2

Q ss_pred             CCCCCccEEEcccCC-cccccc----hhHHHhhcCCCCcEEeCCCCCCCCCCCCCCcccccCCCCCCEEEcCCCCCCcC-
Q 003888           16 PHFKSLDHLDMVFAR-TALNTS----FLQIIRESMPSLKYLSMSDSTLGTNSSRILDQGLCSLMHLQELYIDNNDLRGS-   89 (788)
Q Consensus        16 ~~~~~L~~L~L~~~~-~~~~~~----~~~~l~~~l~~L~~L~Ls~~~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-   89 (788)
                      .+.+.|+.|+|  ++ +.++..    +..++. ..++|++|++++|.++..+.......+...+.++.+++++|.+... 
T Consensus        14 ~~~~~L~~L~L--~~~~~i~~~~~~~l~~al~-~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g   90 (166)
T d1io0a_          14 NNDPDLEEVNL--NNIMNIPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG   90 (166)
T ss_dssp             TTCTTCCEEEC--TTCTTCCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             hcCCCCcEEEc--CCCCCCCHHHHHHHHHHHh-cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchh
Confidence            56789999999  87 456544    345566 7899999999999886322222233566788999999999998754 


Q ss_pred             ---CChhhcCCCCCCEEEC--CCCcCcC----cCChhhhcCCCCCCEEECcCcc
Q 003888           90 ---LPWCLANMTSLRILDV--SSNQLTG----SISSSPLVHLTSIEELMLSNNH  134 (788)
Q Consensus        90 ---~~~~l~~l~~L~~L~L--s~n~~~~----~i~~~~l~~l~~L~~L~Ls~n~  134 (788)
                         +..++...++|+.++|  ++|.+..    .+.. .+...++|++|+++.+.
T Consensus        91 ~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~-~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          91 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHH-HHHhCCCcCEEeCcCCC
Confidence               3456778888987665  4566642    2333 45677888888887664