Citrus Sinensis ID: 003891
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 788 | 2.2.26 [Sep-21-2011] | |||||||
| O82039 | 932 | Probable UDP-N-acetylgluc | N/A | no | 0.988 | 0.835 | 0.853 | 0.0 | |
| Q96301 | 914 | Probable UDP-N-acetylgluc | yes | no | 0.960 | 0.828 | 0.872 | 0.0 | |
| Q8RVB2 | 931 | Probable UDP-N-acetylgluc | N/A | no | 0.991 | 0.838 | 0.839 | 0.0 | |
| Q6YZI0 | 927 | Probable UDP-N-acetylgluc | yes | no | 0.917 | 0.779 | 0.852 | 0.0 | |
| O82422 | 944 | Probable UDP-N-acetylgluc | N/A | no | 0.914 | 0.763 | 0.853 | 0.0 | |
| Q8LP10 | 918 | Probable UDP-N-acetylgluc | N/A | no | 0.969 | 0.832 | 0.807 | 0.0 | |
| Q9M8Y0 | 977 | Probable UDP-N-acetylgluc | no | no | 0.883 | 0.712 | 0.281 | 8e-74 | |
| P56558 | 1036 | UDP-N-acetylglucosamine-- | yes | no | 0.616 | 0.469 | 0.271 | 7e-50 | |
| Q8CGY8 | 1046 | UDP-N-acetylglucosamine-- | yes | no | 0.616 | 0.464 | 0.271 | 7e-50 | |
| O15294 | 1046 | UDP-N-acetylglucosamine-- | yes | no | 0.616 | 0.464 | 0.271 | 8e-50 |
| >sp|O82039|SPY_PETHY Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Petunia hybrida GN=SPY PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1418 bits (3670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 674/790 (85%), Positives = 722/790 (91%), Gaps = 11/790 (1%)
Query: 5 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 64
SY KAL ADPSYKPAAECLAIVLTD+GTSLKLAGN+Q+GIQKYYEA+KID HYAPAYYNL
Sbjct: 138 SYQKALKADPSYKPAAECLAIVLTDIGTSLKLAGNSQEGIQKYYEAIKIDSHYAPAYYNL 197
Query: 65 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124
GVVYSE+MQYD AL CYEKAA+ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN
Sbjct: 198 GVVYSEMMQYDMALNCYEKAAIERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
Query: 125 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 184
FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD
Sbjct: 258 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 317
Query: 185 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 244
MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMAL+IKPNFSQSLNNLGVV
Sbjct: 318 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALTIKPNFSQSLNNLGVV 377
Query: 245 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304
YTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+ISLAI+AYEQCLKIDPDSRN
Sbjct: 378 YTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGNISLAIEAYEQCLKIDPDSRN 437
Query: 305 AGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDY 364
AGQNRLLAMNYINEG DDKL+EAHRDWG RFMRLY QY SWDN+KDPER LVIGYVSPDY
Sbjct: 438 AGQNRLLAMNYINEGSDDKLYEAHRDWGWRFMRLYQQYNSWDNSKDPERQLVIGYVSPDY 497
Query: 365 FTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKK 424
FTHSVSYFIEAPL YHDY NYKVV+YSAVVKADAKT RFR+KV+KKGG+WRDIYGIDEKK
Sbjct: 498 FTHSVSYFIEAPLAYHDYANYKVVIYSAVVKADAKTNRFRDKVLKKGGVWRDIYGIDEKK 557
Query: 425 VAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLA 484
V++M+REDK+DI++ELTGHTANNKLGMMAC+PAPVQVTWIGYPNTTGLPTIDYRITDS+A
Sbjct: 558 VSSMIREDKVDIMIELTGHTANNKLGMMACRPAPVQVTWIGYPNTTGLPTIDYRITDSMA 617
Query: 485 DPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQ 544
DPP TKQKHVEEL+RLP+ FLCYTPSPEAGPV P PALTNGF+TFGSFNNLAKITPKVLQ
Sbjct: 618 DPPSTKQKHVEELVRLPDSFLCYTPSPEAGPVSPAPALTNGFVTFGSFNNLAKITPKVLQ 677
Query: 545 VWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 604
VWARILCAVP+SRL+VKCKPF CDSVR RFLS LEQLGLE RVDL+PLILLNHDHMQAY
Sbjct: 678 VWARILCAVPHSRLIVKCKPFGCDSVRQRFLSILEQLGLEPQRVDLVPLILLNHDHMQAY 737
Query: 605 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDE 664
SLMDISLDTFPYAGTTTTCESLYMGVPCVTM GSVHAHNVGVSLL VGL+ L+A+NEDE
Sbjct: 738 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMGGSVHAHNVGVSLLKTVGLRKLVARNEDE 797
Query: 665 YVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSL 724
YV+LA+QLASDVT+L+NLRMSLR+LM+KSP+CDG F LESTYR+MW RYC GDVPSL
Sbjct: 798 YVELAIQLASDVTSLSNLRMSLRELMAKSPLCDGAQFTQNLESTYRSMWRRYCDGDVPSL 857
Query: 725 KRME-------MLQQQVVSEE-PSKFSEPTKIIFAKEGSPGSVMPNGFNQASPSMLNLSN 776
+RME L + VV EE P E T+I +K+ G + NGF + + N S
Sbjct: 858 RRMELLQQQQQTLAELVVPEESPVSPIEKTRISASKD---GPIKENGFTVSPALVYNSST 914
Query: 777 IEENGVQLNQ 786
IEENGVQLNQ
Sbjct: 915 IEENGVQLNQ 924
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Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Petunia hybrida (taxid: 4102) EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: - |
| >sp|Q96301|SPY_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Arabidopsis thaliana GN=SPY PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1410 bits (3649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 664/761 (87%), Positives = 714/761 (93%), Gaps = 4/761 (0%)
Query: 5 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 64
SY KAL AD SYKPAAECLAIVLTDLGTSLKLAGNTQ+GIQKYYEALKIDPHYAPAYYNL
Sbjct: 133 SYQKALMADASYKPAAECLAIVLTDLGTSLKLAGNTQEGIQKYYEALKIDPHYAPAYYNL 192
Query: 65 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124
GVVYSE+MQYD AL CYEKAALERPMYAEAYCNMGVIYKNRGDLE AI CYERCLAVSPN
Sbjct: 193 GVVYSEMMQYDNALSCYEKAALERPMYAEAYCNMGVIYKNRGDLEMAITCYERCLAVSPN 252
Query: 125 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 184
FEIAKNNMAIALTDLGTKVKLEGD+ QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD
Sbjct: 253 FEIAKNNMAIALTDLGTKVKLEGDVTQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 312
Query: 185 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 244
MAIVFYELAFHFNPHCAEACNNLGV+YKDRDNLDKAVECYQMALSIKPNF+QSLNNLGVV
Sbjct: 313 MAIVFYELAFHFNPHCAEACNNLGVLYKDRDNLDKAVECYQMALSIKPNFAQSLNNLGVV 372
Query: 245 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304
YTVQGKMDAAA MIEKAI ANPTYAEA+NNLGVLYRDAG+I++AIDAYE+CLKIDPDSRN
Sbjct: 373 YTVQGKMDAAASMIEKAILANPTYAEAFNNLGVLYRDAGNITMAIDAYEECLKIDPDSRN 432
Query: 305 AGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDY 364
AGQNRLLAMNYINEG DDKLFEAHRDWG RF RL+ QYTSWDN KDPERP+ IGY+SPD+
Sbjct: 433 AGQNRLLAMNYINEGLDDKLFEAHRDWGWRFTRLHPQYTSWDNLKDPERPITIGYISPDF 492
Query: 365 FTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKK 424
FTHSVSYFIEAPL +HDY YKVVVYSAVVKADAKT RFR+KV+KKGG+W+DIYGIDEKK
Sbjct: 493 FTHSVSYFIEAPLTHHDYTKYKVVVYSAVVKADAKTYRFRDKVLKKGGVWKDIYGIDEKK 552
Query: 425 VAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLA 484
+A+MVREDKIDILVELTGHTANNKLG MAC+PAPVQVTWIGYPNTTGLPT+DYRITDSLA
Sbjct: 553 IASMVREDKIDILVELTGHTANNKLGTMACRPAPVQVTWIGYPNTTGLPTVDYRITDSLA 612
Query: 485 DPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQ 544
DPP+TKQK VEEL+RLP+CFLCYTPSPEAGPVCPTPAL+NGF+TFGSFNNLAKITPKVLQ
Sbjct: 613 DPPDTKQKQVEELVRLPDCFLCYTPSPEAGPVCPTPALSNGFVTFGSFNNLAKITPKVLQ 672
Query: 545 VWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 604
VWARILCAVPNSRLVVKCKPFCCDS+R RFL+TLEQLGLES RVDLLPLIL NHDHMQAY
Sbjct: 673 VWARILCAVPNSRLVVKCKPFCCDSIRQRFLTTLEQLGLESKRVDLLPLILFNHDHMQAY 732
Query: 605 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDE 664
SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGL HL+AKNEDE
Sbjct: 733 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLGHLVAKNEDE 792
Query: 665 YVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSL 724
YVQL++ LASDVTAL+ LRMSLRDLM+ SPVC+G +FA+GLES YRNMW +YCKG+VPSL
Sbjct: 793 YVQLSVDLASDVTALSKLRMSLRDLMAGSPVCNGPSFAVGLESAYRNMWKKYCKGEVPSL 852
Query: 725 KRMEMLQQQVVSEEP--SKFSEPTKIIFAKEGSPGSVMPNG 763
+RMEMLQ++ V ++P SK P+++ E +P S+ NG
Sbjct: 853 RRMEMLQKE-VHDDPLISKDLGPSRVSVTGEATP-SLKANG 891
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Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway and circadian clock. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Acts as a repressor of GA signaling pathway to inhibit hypocotyl elongation. Functions with GIGANTEA (GI) in pathways controlling flowering, circadian cotyledon movements and hypocotyl elongation. Acts as a light-regulated promoter of elongation via its interaction with GI. Acts as an activator of cytokinin signaling. Required with SEC for gamete and seed development. Its OGT activity has been proved in vitro but not in vivo. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q8RVB2|SPY_SOLLC Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Solanum lycopersicum GN=SPY PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1372 bits (3551), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 662/789 (83%), Positives = 712/789 (90%), Gaps = 8/789 (1%)
Query: 5 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 64
SY KAL ADPSY PAAECLAIVLTD+GTSLKLAGNTQ+GIQKYYEA+KID HYAPAYYNL
Sbjct: 138 SYEKALKADPSYTPAAECLAIVLTDIGTSLKLAGNTQEGIQKYYEAIKIDSHYAPAYYNL 197
Query: 65 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124
GVVYSE+MQYD AL CYEKAALERPMYAEAYCNMGVI+KNRGDLESAIACYERCLAVSPN
Sbjct: 198 GVVYSEMMQYDMALNCYEKAALERPMYAEAYCNMGVIFKNRGDLESAIACYERCLAVSPN 257
Query: 125 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 184
FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL YNWHYADAMYNLGVAYGEMLKFD
Sbjct: 258 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALCYNWHYADAMYNLGVAYGEMLKFD 317
Query: 185 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 244
MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ+ALSIKPNFSQSLNNLGVV
Sbjct: 318 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQLALSIKPNFSQSLNNLGVV 377
Query: 245 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304
YTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+ISLAI+AYEQCLKIDPDSRN
Sbjct: 378 YTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGNISLAIEAYEQCLKIDPDSRN 437
Query: 305 AGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDY 364
AGQNRLLAMNYINEG DDKL+EAHRDWG+RFM+LY QYTSWDN+K PERPLVIGYVSPDY
Sbjct: 438 AGQNRLLAMNYINEGTDDKLYEAHRDWGRRFMKLYPQYTSWDNSKVPERPLVIGYVSPDY 497
Query: 365 FTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKK 424
FTHSVSYFIEAPL +HDY NYKVVVYS+VVKADAKT RFR+KVMKKGG+WRDIYGIDEKK
Sbjct: 498 FTHSVSYFIEAPLAHHDYTNYKVVVYSSVVKADAKTNRFRDKVMKKGGLWRDIYGIDEKK 557
Query: 425 VAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLA 484
V++M+REDK+DI+VELTGHTANNKLG MAC+PAPVQVTWIGYPNTTGLPTIDYRITD++A
Sbjct: 558 VSSMIREDKVDIMVELTGHTANNKLGTMACRPAPVQVTWIGYPNTTGLPTIDYRITDAMA 617
Query: 485 DPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQ 544
DPP KQKHVEEL+RLP FLCYTPSPEAGPVCP PAL+NGF+TFGSFNNLAKITPKVL+
Sbjct: 618 DPPNAKQKHVEELVRLPNSFLCYTPSPEAGPVCPAPALSNGFVTFGSFNNLAKITPKVLK 677
Query: 545 VWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 604
VWARIL AVP+SRL+VKCKPFCCDSVR RFLS LEQLGLE RVDLLPLILLNHDHMQAY
Sbjct: 678 VWARILSAVPHSRLIVKCKPFCCDSVRQRFLSILEQLGLEPQRVDLLPLILLNHDHMQAY 737
Query: 605 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDE 664
SLMDISLDTFPYAGTTTTCESLYMGVPCVTM GSVHAHNVGVSLL VGL++L+A+NEDE
Sbjct: 738 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMGGSVHAHNVGVSLLKTVGLENLVARNEDE 797
Query: 665 YVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSL 724
YV+ A+QLASDVT+L+NLRMSLR+LMSKSP+CDG F +ES YR+MW RYC GDVPSL
Sbjct: 798 YVESAIQLASDVTSLSNLRMSLRELMSKSPLCDGAKFTRNIESIYRSMWRRYCDGDVPSL 857
Query: 725 KRM------EMLQQQVVSEEPSKFSEPTKIIFAKEGSPGSVMPNGFNQASPSMLNLSNIE 778
+RM + + VV EE S P++ + GS+ NGF L S E
Sbjct: 858 RRMELLQQQQTQTESVVPEESS--VNPSERTITSAPTDGSIKENGFTAVPALALKSSTSE 915
Query: 779 ENGVQLNQH 787
ENGVQ N +
Sbjct: 916 ENGVQSNHN 924
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Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Solanum lycopersicum (taxid: 4081) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q6YZI0|SPY_ORYSJ Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Oryza sativa subsp. japonica GN=SPY PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1341 bits (3471), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 624/732 (85%), Positives = 685/732 (93%)
Query: 5 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 64
+Y KA +ADPSYKPAAE LAIVLTDLGTSLKLAGNT++GIQKY EAL++D HYAPAYYNL
Sbjct: 124 AYQKARNADPSYKPAAEFLAIVLTDLGTSLKLAGNTEEGIQKYCEALEVDSHYAPAYYNL 183
Query: 65 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124
GVVYSE+MQ+D AL CYEKAALERP+YAEAYCNMGVIYKNRG+LE+AIACYERCL +SPN
Sbjct: 184 GVVYSEMMQFDLALTCYEKAALERPLYAEAYCNMGVIYKNRGELEAAIACYERCLTISPN 243
Query: 125 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 184
FEIAKNNMAIALTDLGTKVK+EGDINQGVAYYKKAL+YNWHYADAMYNLGVAYGEML F+
Sbjct: 244 FEIAKNNMAIALTDLGTKVKIEGDINQGVAYYKKALFYNWHYADAMYNLGVAYGEMLNFE 303
Query: 185 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 244
MAIVFYELA HFNP CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV
Sbjct: 304 MAIVFYELALHFNPRCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 363
Query: 245 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304
YTVQGKMDAA+ MI+KAI AN TYAEAYNNLGVLYRDAGSI+ A+ AYE+CL+IDPDSRN
Sbjct: 364 YTVQGKMDAASSMIQKAIFANSTYAEAYNNLGVLYRDAGSITSAVQAYEKCLQIDPDSRN 423
Query: 305 AGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDY 364
AGQNRLLA+NYI+EG DDKL++AHR+WGKRF++LY QYTSWDN K +RPLVIGYVSPDY
Sbjct: 424 AGQNRLLALNYIDEGFDDKLYQAHREWGKRFLKLYPQYTSWDNPKVADRPLVIGYVSPDY 483
Query: 365 FTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKK 424
FTHSVSYFIEAPL +HDY NYKVVVYS VVKADAKT+RF++KV+KKGG+WRDIYGIDEKK
Sbjct: 484 FTHSVSYFIEAPLAHHDYSNYKVVVYSGVVKADAKTLRFKDKVLKKGGLWRDIYGIDEKK 543
Query: 425 VAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLA 484
VA++VREDK+DILVELTGHTANNKLG MAC+PAP+QVTWIGYPNTTGLPTIDYRITDSLA
Sbjct: 544 VASLVREDKVDILVELTGHTANNKLGTMACRPAPIQVTWIGYPNTTGLPTIDYRITDSLA 603
Query: 485 DPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQ 544
DPP+T QKHVEEL+RLPE FLCY+PSPEAGPVCPTPA+ NGFITFGSFNNLAKITPKVLQ
Sbjct: 604 DPPDTTQKHVEELVRLPESFLCYSPSPEAGPVCPTPAILNGFITFGSFNNLAKITPKVLQ 663
Query: 545 VWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 604
VWA+ILCAVPNSRLVVKCKPFCCDS+R +FLSTL +LGLE LRVDLLPLI LNHDHMQAY
Sbjct: 664 VWAKILCAVPNSRLVVKCKPFCCDSIRQKFLSTLAELGLEPLRVDLLPLIHLNHDHMQAY 723
Query: 605 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDE 664
SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGL L+AK+E+E
Sbjct: 724 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLGRLVAKSENE 783
Query: 665 YVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSL 724
YV LAL LA+DVTAL LRMSLR LM+KSPVCDG+NF GLES YRNMW RYC GD P+L
Sbjct: 784 YVSLALDLAADVTALQELRMSLRGLMAKSPVCDGENFTRGLESAYRNMWRRYCDGDAPAL 843
Query: 725 KRMEMLQQQVVS 736
+R+++LQ++ S
Sbjct: 844 RRLDLLQEEPCS 855
|
Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|O82422|SPY_HORVU Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Hordeum vulgare GN=SPY PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1341 bits (3471), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 623/730 (85%), Positives = 680/730 (93%)
Query: 5 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 64
+Y KA SADPSYK A+E LAIVLTDLGTSLKLAGNT+DGIQKY EAL++D HYAPAYYNL
Sbjct: 124 AYQKARSADPSYKAASEFLAIVLTDLGTSLKLAGNTEDGIQKYCEALEVDSHYAPAYYNL 183
Query: 65 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124
GVVYSE+MQ+D AL CYEKAALERP+YAEAYCNMGVIYKNRG+L++AIACY+RCL +SPN
Sbjct: 184 GVVYSEMMQFDVALTCYEKAALERPLYAEAYCNMGVIYKNRGELDAAIACYDRCLTISPN 243
Query: 125 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 184
FEIAKNNMAIALTDLGTKVK+EGDINQGVAYYKKAL+YNWHYADAMYNLGVAYGEML F+
Sbjct: 244 FEIAKNNMAIALTDLGTKVKIEGDINQGVAYYKKALFYNWHYADAMYNLGVAYGEMLNFE 303
Query: 185 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 244
MAIVFYELA HFNP CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV
Sbjct: 304 MAIVFYELALHFNPRCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 363
Query: 245 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304
YTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAGSI+L++ AYE+CL+IDPDSRN
Sbjct: 364 YTVQGKMDAAASMIEKAILANPTYAEAYNNLGVLYRDAGSITLSVQAYERCLQIDPDSRN 423
Query: 305 AGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDY 364
AGQNRLLAMNYI+EG DDKL++AHR+WGKRFM+LY+QYTSWDN K +RPLVIGYVSPD+
Sbjct: 424 AGQNRLLAMNYIDEGSDDKLYDAHREWGKRFMKLYAQYTSWDNPKVADRPLVIGYVSPDF 483
Query: 365 FTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKK 424
FTHSVSYF+EAPL +HDY KVVVYS VVKADAKT+RF++KV+KKGG+WRDIYGIDEKK
Sbjct: 484 FTHSVSYFVEAPLTHHDYTKCKVVVYSGVVKADAKTLRFKDKVLKKGGVWRDIYGIDEKK 543
Query: 425 VAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLA 484
VA +VREDK+DILVELTGHTANNKLG MAC+PAP+QVTWIGYPNTTGLP IDYRITDSLA
Sbjct: 544 VATLVREDKVDILVELTGHTANNKLGTMACRPAPIQVTWIGYPNTTGLPAIDYRITDSLA 603
Query: 485 DPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQ 544
D P T QKHVEEL+RLPE FLCYTPSPEAGPVCPTPA++NGFITFGSFNNLAKITPKV+Q
Sbjct: 604 DSPNTNQKHVEELVRLPESFLCYTPSPEAGPVCPTPAISNGFITFGSFNNLAKITPKVMQ 663
Query: 545 VWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 604
VWARILCAVPNSRLVVKCKPFCCDS+R +FLSTLE+LGLESLRVDLLPLI LNHDHMQAY
Sbjct: 664 VWARILCAVPNSRLVVKCKPFCCDSIRQKFLSTLEELGLESLRVDLLPLIHLNHDHMQAY 723
Query: 605 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDE 664
SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGL L+AK EDE
Sbjct: 724 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLGRLVAKTEDE 783
Query: 665 YVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSL 724
YV LAL LASDV+AL LR SLR+LM KSPVCDG++F GLES YR+MWHRYC GD P+L
Sbjct: 784 YVSLALDLASDVSALEELRKSLRELMIKSPVCDGESFTRGLESAYRSMWHRYCDGDSPAL 843
Query: 725 KRMEMLQQQV 734
+R+E+L Q
Sbjct: 844 RRLEVLADQT 853
|
Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Hordeum vulgare (taxid: 4513) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q8LP10|SPY_EUSER Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Eustoma exaltatum subsp. russellianum GN=SPY PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1324 bits (3426), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 645/799 (80%), Positives = 699/799 (87%), Gaps = 35/799 (4%)
Query: 4 ASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN 63
ASY KAL ADPSYKPAAECLA VL DLGTSLK GNTQ+GIQKYYEA+KIDPHYAPA YN
Sbjct: 120 ASYQKALQADPSYKPAAECLATVLNDLGTSLK--GNTQEGIQKYYEAVKIDPHYAPACYN 177
Query: 64 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 123
LGVVYSE+MQYD AL CYE+AA E P YA+AYCN G+IYKNRGDL CLAVSP
Sbjct: 178 LGVVYSEMMQYDVALSCYERAATESPTYADAYCNTGIIYKNRGDL---------CLAVSP 228
Query: 124 NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 183
NFEIAKNNM IALTDLGTK KLEGDI+QGVAYYKKALYYNWHY+DAMYNLGVAYGEMLKF
Sbjct: 229 NFEIAKNNMGIALTDLGTKEKLEGDIDQGVAYYKKALYYNWHYSDAMYNLGVAYGEMLKF 288
Query: 184 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 243
DMAI+F ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ ALSIKPNFSQSLNNLGV
Sbjct: 289 DMAIIFDELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQKALSIKPNFSQSLNNLGV 348
Query: 244 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 303
V+TVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+I LAI+AYEQCLKIDPDSR
Sbjct: 349 VFTVQGKMDAAASMIEKAIVANPTYAEAYNNLGVLYRDAGNIFLAIEAYEQCLKIDPDSR 408
Query: 304 NAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPD 363
NAGQNRLLAMNYINEG DD+L+EAHRDWG RFMRLYSQYTSWDN KDPERPLVIGY SPD
Sbjct: 409 NAGQNRLLAMNYINEGADDRLYEAHRDWGGRFMRLYSQYTSWDNPKDPERPLVIGYGSPD 468
Query: 364 YFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEK 423
+F +SYFIEAPL+YHDY+N+KVV YSAVVKADAKT RFRE+V+KKGGIWRDIYGIDEK
Sbjct: 469 HF---LSYFIEAPLLYHDYENFKVVTYSAVVKADAKTNRFRERVLKKGGIWRDIYGIDEK 525
Query: 424 KVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSL 483
KVA+M+REDK+DIL+ELTGHTANNKLGMMAC+PAP+QVTWIGYPNTTGLPTIDYRITDSL
Sbjct: 526 KVASMIREDKVDILIELTGHTANNKLGMMACRPAPIQVTWIGYPNTTGLPTIDYRITDSL 585
Query: 484 ADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVL 543
ADP +TKQKHVEELI+LP CFLCYTPSPEAGPV PTPAL+NGFITFGSFNNLAKITPKVL
Sbjct: 586 ADPLDTKQKHVEELIQLPACFLCYTPSPEAGPVSPTPALSNGFITFGSFNNLAKITPKVL 645
Query: 544 QVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 603
QVWARILCAV NSRL+VKCKPFCC+SVR FLSTLEQLGLES RVDLLPLILLNHDHMQA
Sbjct: 646 QVWARILCAVSNSRLIVKCKPFCCESVRQTFLSTLEQLGLESTRVDLLPLILLNHDHMQA 705
Query: 604 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNED 663
YSLMDISLDTFPYAGTTTTCESLYMGVPC+TM G VHAHNVGVSLL+ VGL HL+AKNED
Sbjct: 706 YSLMDISLDTFPYAGTTTTCESLYMGVPCITMRGLVHAHNVGVSLLSTVGLGHLVAKNED 765
Query: 664 EYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPS 723
+YV+LA+QLASDVTAL+NLR++LR+LMSKSP+CDG F LE TYR+MWHRYCKGD+PS
Sbjct: 766 DYVRLAVQLASDVTALSNLRLTLRELMSKSPLCDGPKFIQDLELTYRSMWHRYCKGDIPS 825
Query: 724 LKRMEMLQQQ---VVSEE--------PSKF--SEPTKIIFAKEGSPGS-------VMPNG 763
L RME+LQ++ VV E+ P K EP E P S + NG
Sbjct: 826 LSRMEILQKEELDVVQEQLHQQPNTSPQKLVKDEPADDASGPEHGPASKDNPLVLIKING 885
Query: 764 FNQASPSMLNLSNIEENGV 782
+N + S + + EENGV
Sbjct: 886 YNTSP-SSITSPSSEENGV 903
|
Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins (By similarity). May function as a negative regulator of GA signal transduction during vernalization, inhibiting adventitious shoot elongation during vernalization. Eustoma exaltatum subsp. russellianum (taxid: 52518) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana GN=SEC PE=2 SV=1 | Back alignment and function description |
|---|
Score = 278 bits (712), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 217/771 (28%), Positives = 342/771 (44%), Gaps = 75/771 (9%)
Query: 6 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 65
Y +A+ P++ AI ++L +G+ +Q Y EA+K+ P + AY NLG
Sbjct: 212 YLEAVRIQPTF-------AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPAFPDAYLNLG 264
Query: 66 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 125
VY L + A+ CY+ A RP A A+ N+ IY +G L+ AI Y++ L+ P F
Sbjct: 265 NVYKALGRPTEAIMCYQHALQMRPNSAMAFGNIASIYYEQGQLDLAIRHYKQALSRDPRF 324
Query: 126 EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 185
A NN+ AL D+G +++ V Y + L ++ AM NLG Y E
Sbjct: 325 LEAYNNLGNALKDIGR-------VDEAVRCYNQCLALQPNHPQAMANLGNIYMEWNMMGP 377
Query: 186 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 245
A ++ + NNL +IYK + N A+ CY L I P + +L N G Y
Sbjct: 378 ASSLFKATLAVTTGLSAPFNNLAIIYKQQGNYSDAISCYNEVLRIDPLAADALVNRGNTY 437
Query: 246 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 305
G++ A + AI PT AEA+ NL Y+D+G + AI +Y+Q L + PD A
Sbjct: 438 KEIGRVTEAIQDYMHAINFRPTMAEAHANLASAYKDSGHVEAAITSYKQALLLRPDFPEA 497
Query: 306 GQNRLLAMNYINEGHD-DKLFEAHRDWGKR--FMRLYSQYTSWDNTKDPERPLVIGYVSP 362
N L + + D K+F +R M + + P P++ +S
Sbjct: 498 TCNLLHTLQCVCCWEDRSKMFAEVESIIRRQINMSVLPSVQPFHAIAYPIDPILALEISR 557
Query: 363 DY---------------FTHSV-------------------SYFIEAPLVY--------H 380
Y FTH S F PL + H
Sbjct: 558 KYAAHCSIIASRFGLPPFTHPAGLPVKREGGFKRLRIGYVSSDFGNHPLSHLMGSVFGMH 617
Query: 381 DYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVEL 440
+ +N +V Y+ + A+ T +R+++ + + D+ + +A ++ +DKI IL+ L
Sbjct: 618 NRENVEVFCYA--LSANDNT-EWRQRIQSEAEHFLDVSAMSSDAIAKIINQDKIQILINL 674
Query: 441 TGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRL 500
G+T + + A QPAP+QV+++G+P TTG IDY +TD P + + E+L+ L
Sbjct: 675 NGYTKGARNEIFAMQPAPIQVSYMGFPGTTGATYIDYLVTDEFVSPLQYAHIYSEKLVHL 734
Query: 501 PECFLCY--------TPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCA 552
P C+ P + P L F FN L K+ P+++ W IL
Sbjct: 735 PHCYFVNDYKQKNQDVLDPNSKPKRSDYGLPEDKFIFACFNQLYKMDPEIVNTWCNILKR 794
Query: 553 VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLD 612
VPNS L + P + RF + G++ ++ + + + +H++ L D+ LD
Sbjct: 795 VPNSALWLLRFPAAGEM---RFRTYAAAQGVQPDQI-IFTDVAMKSEHIRRSVLADVILD 850
Query: 613 TFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKH-LIAKNEDEYVQLALQ 671
T G TT + L+ GVP +T+ A V SL GL H +I + +EY + A+
Sbjct: 851 TPLCNGHTTGTDVLWAGVPMITLPLEKMATRVAGSLCLATGLGHGMIVNSLEEYEEKAVS 910
Query: 672 LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVP 722
LA + L L LR P+ D + LE +Y MW+ +C G P
Sbjct: 911 LALNKPKLQALTKELRASRLTCPLFDTMRWVKNLERSYFKMWNLHCSGQQP 961
|
O-linked N-acetylglucosamine transferase (OGT) that mediates O-glycosylation of capsid protein (CP) of virus in case of infection by Plum pox virus. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Its OGT activity has been proved in vitro but not in vivo. Required with SPY for gamete and seed development. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|P56558|OGT1_RAT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Rattus norvegicus GN=Ogt PE=1 SV=1 | Back alignment and function description |
|---|
Score = 199 bits (506), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 157/579 (27%), Positives = 262/579 (45%), Gaps = 93/579 (16%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
V +Y AL +P L V +DLG LK G ++ Y +A++ P++A A+
Sbjct: 133 VQAYVSALQYNPD-------LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWS 185
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 122
NLG V++ + A+ +EKA P + +AY N+G + K + A+A Y R L++S
Sbjct: 186 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 245
Query: 123 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 182
PN + N+A + +G I+ + Y++A+ H+ DA NL A E
Sbjct: 246 PNHAVVHGNLACVYYE-------QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS 298
Query: 183 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 242
A Y A P A++ NNL I +++ N+++AV Y+ AL + P F+ + +NL
Sbjct: 299 VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 358
Query: 243 VVYTVQGKMDAA-------------------------AEMIE---------KAIAANPTY 268
V QGK+ A EM + +AI NP +
Sbjct: 359 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 418
Query: 269 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA----------------------- 305
A+A++NL +++D+G+I AI +Y LK+ PD +A
Sbjct: 419 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKK 478
Query: 306 ---------GQNRLLAMN-------YINEGHDDKLFEAHRDWGKRFMRLYSQ--YTSWDN 347
+NRL +++ ++ G + E H + + + + Y +
Sbjct: 479 LVSIVAEQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKD 538
Query: 348 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 407
K + L +GYVS D+ H S+ +++ H+ ++V Y+ + D T FR KV
Sbjct: 539 LKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYA--LSPDDGT-NFRVKV 595
Query: 408 MKKGGIWRDIYGID-EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGY 466
M + + D+ I K A + +D I ILV + G+T + + A +PAP+Q W+GY
Sbjct: 596 MAEANHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGY 655
Query: 467 PNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFL 505
P T+G +DY ITD P E +++ E+L +P F
Sbjct: 656 PGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFF 694
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|Q8CGY8|OGT1_MOUSE UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Mus musculus GN=Ogt PE=1 SV=2 | Back alignment and function description |
|---|
Score = 199 bits (506), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 157/579 (27%), Positives = 262/579 (45%), Gaps = 93/579 (16%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
V +Y AL +P L V +DLG LK G ++ Y +A++ P++A A+
Sbjct: 143 VQAYVSALQYNPD-------LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWS 195
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 122
NLG V++ + A+ +EKA P + +AY N+G + K + A+A Y R L++S
Sbjct: 196 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 255
Query: 123 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 182
PN + N+A + +G I+ + Y++A+ H+ DA NL A E
Sbjct: 256 PNHAVVHGNLACVYYE-------QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS 308
Query: 183 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 242
A Y A P A++ NNL I +++ N+++AV Y+ AL + P F+ + +NL
Sbjct: 309 VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 368
Query: 243 VVYTVQGKMDAA-------------------------AEMIE---------KAIAANPTY 268
V QGK+ A EM + +AI NP +
Sbjct: 369 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 428
Query: 269 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA----------------------- 305
A+A++NL +++D+G+I AI +Y LK+ PD +A
Sbjct: 429 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKK 488
Query: 306 ---------GQNRLLAMN-------YINEGHDDKLFEAHRDWGKRFMRLYSQ--YTSWDN 347
+NRL +++ ++ G + E H + + + + Y +
Sbjct: 489 LVSIVAEQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKD 548
Query: 348 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 407
K + L +GYVS D+ H S+ +++ H+ ++V Y+ + D T FR KV
Sbjct: 549 LKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYA--LSPDDGT-NFRVKV 605
Query: 408 MKKGGIWRDIYGID-EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGY 466
M + + D+ I K A + +D I ILV + G+T + + A +PAP+Q W+GY
Sbjct: 606 MAEANHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGY 665
Query: 467 PNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFL 505
P T+G +DY ITD P E +++ E+L +P F
Sbjct: 666 PGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFF 704
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|O15294|OGT1_HUMAN UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Homo sapiens GN=OGT PE=1 SV=3 | Back alignment and function description |
|---|
Score = 199 bits (506), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 157/579 (27%), Positives = 262/579 (45%), Gaps = 93/579 (16%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
V +Y AL +P L V +DLG LK G ++ Y +A++ P++A A+
Sbjct: 143 VQAYVSALQYNPD-------LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWS 195
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 122
NLG V++ + A+ +EKA P + +AY N+G + K + A+A Y R L++S
Sbjct: 196 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 255
Query: 123 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 182
PN + N+A + +G I+ + Y++A+ H+ DA NL A E
Sbjct: 256 PNHAVVHGNLACVYYE-------QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS 308
Query: 183 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 242
A Y A P A++ NNL I +++ N+++AV Y+ AL + P F+ + +NL
Sbjct: 309 VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 368
Query: 243 VVYTVQGKMDAA-------------------------AEMIE---------KAIAANPTY 268
V QGK+ A EM + +AI NP +
Sbjct: 369 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 428
Query: 269 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA----------------------- 305
A+A++NL +++D+G+I AI +Y LK+ PD +A
Sbjct: 429 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKK 488
Query: 306 ---------GQNRLLAMN-------YINEGHDDKLFEAHRDWGKRFMRLYSQ--YTSWDN 347
+NRL +++ ++ G + E H + + + + Y +
Sbjct: 489 LVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKD 548
Query: 348 TKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKV 407
K + L +GYVS D+ H S+ +++ H+ ++V Y+ + D T FR KV
Sbjct: 549 LKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYA--LSPDDGT-NFRVKV 605
Query: 408 MKKGGIWRDIYGID-EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGY 466
M + + D+ I K A + +D I ILV + G+T + + A +PAP+Q W+GY
Sbjct: 606 MAEANHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGY 665
Query: 467 PNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFL 505
P T+G +DY ITD P E +++ E+L +P F
Sbjct: 666 PGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFF 704
|
Isoform 2, the mitochondrial isoform (mOGT), is cytotoxic and triggers apoptosis in several cell types including INS1, an insulinoma cell line. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 788 | ||||||
| 225440809 | 914 | PREDICTED: probable UDP-N-acetylglucosam | 0.975 | 0.841 | 0.897 | 0.0 | |
| 255579381 | 930 | o-linked n-acetylglucosamine transferase | 0.991 | 0.839 | 0.887 | 0.0 | |
| 356500631 | 928 | PREDICTED: probable UDP-N-acetylglucosam | 0.992 | 0.842 | 0.877 | 0.0 | |
| 256772634 | 916 | putative SPINDLY protein [Rosa lucieae] | 0.984 | 0.847 | 0.883 | 0.0 | |
| 356505394 | 919 | PREDICTED: probable UDP-N-acetylglucosam | 0.973 | 0.834 | 0.868 | 0.0 | |
| 224088480 | 934 | predicted protein [Populus trichocarpa] | 0.989 | 0.835 | 0.866 | 0.0 | |
| 356570865 | 917 | PREDICTED: probable UDP-N-acetylglucosam | 0.983 | 0.845 | 0.872 | 0.0 | |
| 356534448 | 929 | PREDICTED: probable UDP-N-acetylglucosam | 0.992 | 0.841 | 0.871 | 0.0 | |
| 224140075 | 917 | predicted protein [Populus trichocarpa] | 0.969 | 0.833 | 0.882 | 0.0 | |
| 449526080 | 925 | PREDICTED: probable UDP-N-acetylglucosam | 0.983 | 0.837 | 0.872 | 0.0 |
| >gi|225440809|ref|XP_002281883.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Vitis vinifera] gi|297740152|emb|CBI30334.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1471 bits (3808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 698/778 (89%), Positives = 732/778 (94%)
Query: 5 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 64
SY KAL D SYKPAAECLAIVLTDLGTSLKLAGNTQ+GIQKYYEALKIDPHYAPAYYNL
Sbjct: 136 SYDKALRIDSSYKPAAECLAIVLTDLGTSLKLAGNTQEGIQKYYEALKIDPHYAPAYYNL 195
Query: 65 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124
GVVYSE+MQYDTAL CYEKAALERPMYAEAYCNMGVI+KNRGDLESAI CYERCLAVSPN
Sbjct: 196 GVVYSEMMQYDTALSCYEKAALERPMYAEAYCNMGVIFKNRGDLESAITCYERCLAVSPN 255
Query: 125 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 184
FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD
Sbjct: 256 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 315
Query: 185 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 244
MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ+ALSIKPNFSQSLNNLGVV
Sbjct: 316 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQLALSIKPNFSQSLNNLGVV 375
Query: 245 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304
YTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+IS+AI+AYEQCLKIDPDSRN
Sbjct: 376 YTVQGKMDAAASMIEKAIVANPTYAEAYNNLGVLYRDAGNISMAIEAYEQCLKIDPDSRN 435
Query: 305 AGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDY 364
AGQNRLLAMNYINEG+DDKLFEAHRDWG+RFMRLY QYTSWDN KDPERPLV+GYVSPDY
Sbjct: 436 AGQNRLLAMNYINEGNDDKLFEAHRDWGRRFMRLYPQYTSWDNPKDPERPLVVGYVSPDY 495
Query: 365 FTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKK 424
FTHSVSYFIEAPLV HDY NYKVVVYSAVVKADAKTIRFR+KV+K+GG+WRDIYGIDEKK
Sbjct: 496 FTHSVSYFIEAPLVNHDYANYKVVVYSAVVKADAKTIRFRDKVLKRGGVWRDIYGIDEKK 555
Query: 425 VAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLA 484
VA+MVREDK+DILVELTGHTANNKLGMMAC+PAPVQVTWIGYPNTTGLPTIDYRITDSLA
Sbjct: 556 VASMVREDKVDILVELTGHTANNKLGMMACRPAPVQVTWIGYPNTTGLPTIDYRITDSLA 615
Query: 485 DPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQ 544
D P+T QKHVEEL+RLPECFLCY PSPEAGPV PTPAL+NGFITFGSFNNLAKITPKVLQ
Sbjct: 616 DLPDTSQKHVEELVRLPECFLCYMPSPEAGPVSPTPALSNGFITFGSFNNLAKITPKVLQ 675
Query: 545 VWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 604
VWARILCAVPNSRLVVKCKPFCCDSVR RFLSTLEQLGLESLRVDLLPLILLNHDHMQAY
Sbjct: 676 VWARILCAVPNSRLVVKCKPFCCDSVRQRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 735
Query: 605 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDE 664
+LMDISLDTFPYAGTTTTCESL+MGVPCVTMAGSVHAHNVGVSLL KVGL L+AK EDE
Sbjct: 736 ALMDISLDTFPYAGTTTTCESLFMGVPCVTMAGSVHAHNVGVSLLNKVGLGRLVAKTEDE 795
Query: 665 YVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSL 724
YVQLALQLASD+TAL+NLRMSLRDLMSKSPVC+G NFAL LESTYR+MW RYCKGDVPSL
Sbjct: 796 YVQLALQLASDITALSNLRMSLRDLMSKSPVCNGPNFALALESTYRSMWRRYCKGDVPSL 855
Query: 725 KRMEMLQQQVVSEEPSKFSEPTKIIFAKEGSPGSVMPNGFNQASPSMLNLSNIEENGV 782
+RME+LQQ+ E K EPTKI +++ S GS+ NG NQ SML S EENGV
Sbjct: 856 RRMEILQQENSEEPVVKLPEPTKITNSRDDSSGSIKTNGLNQVPSSMLKHSTSEENGV 913
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255579381|ref|XP_002530535.1| o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] gi|223529939|gb|EEF31867.1| o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1459 bits (3777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 697/785 (88%), Positives = 736/785 (93%), Gaps = 4/785 (0%)
Query: 5 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 64
SY KAL ADP YKPAAECL+IVLTDLGTSLKL+GNTQ+GIQKYYEALKIDPHYAPAYYNL
Sbjct: 139 SYQKALRADPLYKPAAECLSIVLTDLGTSLKLSGNTQEGIQKYYEALKIDPHYAPAYYNL 198
Query: 65 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124
GVVYSE+MQYDTAL CYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN
Sbjct: 199 GVVYSEMMQYDTALNCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 258
Query: 125 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 184
FEIAKNNMAIALTDLGTKVKLEGDINQG+AYYKKALYYNWHYADAMYNLGVAYGEMLKFD
Sbjct: 259 FEIAKNNMAIALTDLGTKVKLEGDINQGIAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 318
Query: 185 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 244
AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ ALSIKPNFSQSLNNLGVV
Sbjct: 319 NAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQTALSIKPNFSQSLNNLGVV 378
Query: 245 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304
YTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+I +AI+AYEQCLKIDPDSRN
Sbjct: 379 YTVQGKMDAAASMIEKAIMANPTYAEAYNNLGVLYRDAGNIPMAINAYEQCLKIDPDSRN 438
Query: 305 AGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDY 364
AGQNRLLAMNYINEGHD+KLFEAHRDWG+RFMRLY QYT WDN KD +RPLVIGYVSPDY
Sbjct: 439 AGQNRLLAMNYINEGHDEKLFEAHRDWGRRFMRLYPQYTMWDNPKDLDRPLVIGYVSPDY 498
Query: 365 FTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKK 424
FTHSVSYFIEAPLVYHDY NYKVVVYSAVVKADAKTIRFREKV+K+GGIWRDIYGIDEKK
Sbjct: 499 FTHSVSYFIEAPLVYHDYANYKVVVYSAVVKADAKTIRFREKVLKQGGIWRDIYGIDEKK 558
Query: 425 VAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLA 484
VA+MVRED +DILVELTGHTANNKLGMMAC+PAP+QVTWIGYPNTTGLPTIDYRITDSLA
Sbjct: 559 VASMVREDNVDILVELTGHTANNKLGMMACRPAPIQVTWIGYPNTTGLPTIDYRITDSLA 618
Query: 485 DPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQ 544
DP +TKQKHVEEL+RLP+CFLCYTPSPEAGPVCPTPAL NGFITFGSFNNLAKITPKVLQ
Sbjct: 619 DPRDTKQKHVEELVRLPDCFLCYTPSPEAGPVCPTPALANGFITFGSFNNLAKITPKVLQ 678
Query: 545 VWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 604
VWARILCAVPNSRLVVKCKPFCCDSVR RFL+ LE+LGLESLRVDLLPLILLNHDHMQAY
Sbjct: 679 VWARILCAVPNSRLVVKCKPFCCDSVRQRFLTMLEELGLESLRVDLLPLILLNHDHMQAY 738
Query: 605 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDE 664
SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG++HAHNVGVSLL+KVGL HL+A+NED
Sbjct: 739 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGAIHAHNVGVSLLSKVGLGHLVAQNEDN 798
Query: 665 YVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSL 724
YVQLALQLASD+ AL+NLRMSLRDLMSKSPVCDG F LGLES+YR+MWHRYCKGDVPSL
Sbjct: 799 YVQLALQLASDIPALSNLRMSLRDLMSKSPVCDGSKFTLGLESSYRDMWHRYCKGDVPSL 858
Query: 725 KRMEMLQQQVVSEE-PSKFSEPTKIIFAKEGSPGSVMPNGFNQASPSMLNLSNIEEN--G 781
KRME+L+QQ SE P++ EPT+ F EG P SV NG+N S S+LN S+ EEN
Sbjct: 859 KRMELLKQQKGSEAVPNENFEPTRNAFPVEGPPESVKLNGYNIVSSSILNRSS-EENVSQ 917
Query: 782 VQLNQ 786
QLN
Sbjct: 918 TQLNH 922
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356500631|ref|XP_003519135.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Glycine max] gi|401721241|gb|AFP99901.1| putative UDP-N-acetylglucosamin [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1459 bits (3777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 687/783 (87%), Positives = 734/783 (93%), Gaps = 1/783 (0%)
Query: 5 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 64
SY KAL DPSYK AAECLAIVLTD+GT++KLAGNTQ+GIQKY+EALKIDPHYAPAYYNL
Sbjct: 136 SYQKALQVDPSYKAAAECLAIVLTDIGTNIKLAGNTQEGIQKYFEALKIDPHYAPAYYNL 195
Query: 65 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124
GVVYSE+MQYD AL YEKAA ERPMYAEAYCNMGVIYKNRGDLE+AI CYERCLAVSPN
Sbjct: 196 GVVYSEMMQYDMALTFYEKAASERPMYAEAYCNMGVIYKNRGDLEAAITCYERCLAVSPN 255
Query: 125 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 184
FEIAKNNMAIALTDLGTKVKLEGDI+ GVA+YKKALYYNWHYADAMYNLGVAYGEMLKFD
Sbjct: 256 FEIAKNNMAIALTDLGTKVKLEGDIDHGVAFYKKALYYNWHYADAMYNLGVAYGEMLKFD 315
Query: 185 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 244
MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ+AL IKPNFSQSLNNLGVV
Sbjct: 316 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQLALGIKPNFSQSLNNLGVV 375
Query: 245 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304
YTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG I+LAI+AYEQCLKIDPDSRN
Sbjct: 376 YTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGDIALAINAYEQCLKIDPDSRN 435
Query: 305 AGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDY 364
AGQNRLLAMNYI+EG+DDKLFEAHRDWG+RFMRLYSQ+TSWDN+KDPERPLVIGYVSPDY
Sbjct: 436 AGQNRLLAMNYIDEGNDDKLFEAHRDWGRRFMRLYSQFTSWDNSKDPERPLVIGYVSPDY 495
Query: 365 FTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKK 424
FTHSVSYFIEAPL+YHDY NYKVVVYSAVVKADAKTIRFREKV+KKGGIW+DIYG DEKK
Sbjct: 496 FTHSVSYFIEAPLLYHDYTNYKVVVYSAVVKADAKTIRFREKVLKKGGIWKDIYGTDEKK 555
Query: 425 VAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLA 484
VA MVRED++DIL+ELTGHTANNKLGMMAC+PAPVQVTWIGYPNTTGLPTIDYRITDS A
Sbjct: 556 VADMVREDQVDILIELTGHTANNKLGMMACRPAPVQVTWIGYPNTTGLPTIDYRITDSQA 615
Query: 485 DPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQ 544
DPPETKQKHVEEL+RLP+CFLCYTPSPEAGPVCPTPAL+NGF+TFGSFNNLAKITPKVLQ
Sbjct: 616 DPPETKQKHVEELVRLPDCFLCYTPSPEAGPVCPTPALSNGFVTFGSFNNLAKITPKVLQ 675
Query: 545 VWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 604
VWA+ILCA+PNSRLVVKCKPFCCDSVR RFLSTLE+LGLE LRVDLLPLILLNHDHMQAY
Sbjct: 676 VWAKILCAIPNSRLVVKCKPFCCDSVRQRFLSTLEKLGLEPLRVDLLPLILLNHDHMQAY 735
Query: 605 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDE 664
SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL+KVGL +LIAKNEDE
Sbjct: 736 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLSKVGLGNLIAKNEDE 795
Query: 665 YVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSL 724
YV+LA++LASD++AL NLRMSLR+LMSKSP+C+G F LGLESTYR MW RYCKGDVP+L
Sbjct: 796 YVKLAVKLASDISALQNLRMSLRELMSKSPLCNGAKFTLGLESTYRKMWRRYCKGDVPAL 855
Query: 725 KRMEMLQQQVVSEEPS-KFSEPTKIIFAKEGSPGSVMPNGFNQASPSMLNLSNIEENGVQ 783
KRME+LQQ V S +PS K SEPT+ + EGSPGSV NGF+ P LN N EENG
Sbjct: 856 KRMELLQQPVSSNDPSNKNSEPTRATNSSEGSPGSVKANGFSSTQPPKLNFVNCEENGGS 915
Query: 784 LNQ 786
LN
Sbjct: 916 LNH 918
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|256772634|emb|CAX46402.1| putative SPINDLY protein [Rosa lucieae] | Back alignment and taxonomy information |
|---|
Score = 1446 bits (3744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 688/779 (88%), Positives = 729/779 (93%), Gaps = 3/779 (0%)
Query: 5 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 64
SY KAL+ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDG+QKYYEALK DPHYAPAYYNL
Sbjct: 140 SYQKALNADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGLQKYYEALKTDPHYAPAYYNL 199
Query: 65 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124
GVVYSE+MQ+DTAL CYEKAALERPMY EAYCNMGVIYKNRGDLESAIACYERCLAVSPN
Sbjct: 200 GVVYSEMMQFDTALTCYEKAALERPMYTEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 259
Query: 125 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 184
FEIAKNNMAIALTDLGTKVKLEGDI+QG+AYYKKALYYNWHYADAMYNLGVAYGEMLKFD
Sbjct: 260 FEIAKNNMAIALTDLGTKVKLEGDIDQGIAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 319
Query: 185 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 244
MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV
Sbjct: 320 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 379
Query: 245 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304
YTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+IS+AIDAYEQCLKIDPDSRN
Sbjct: 380 YTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGNISMAIDAYEQCLKIDPDSRN 439
Query: 305 AGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDY 364
AGQNRLLAMNYI+EG DDKLF AHRDWG+RFMRL SQ+TSWDN KDPERPLVIGYVSPDY
Sbjct: 440 AGQNRLLAMNYIHEGQDDKLFVAHRDWGRRFMRLSSQHTSWDNLKDPERPLVIGYVSPDY 499
Query: 365 FTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKK 424
FTHSVSYFIEAPL +H+Y YKVVVYSAVVKADAKTIRFR+KV+KKGGIWRDIYGIDEKK
Sbjct: 500 FTHSVSYFIEAPLAHHEYAKYKVVVYSAVVKADAKTIRFRDKVLKKGGIWRDIYGIDEKK 559
Query: 425 VAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLA 484
VA++VREDKIDILVELTGHTANNKLG MAC+PAPVQVTWIGYPNTTGLP IDYRITDSLA
Sbjct: 560 VASIVREDKIDILVELTGHTANNKLGTMACRPAPVQVTWIGYPNTTGLPAIDYRITDSLA 619
Query: 485 DPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQ 544
D P++KQKHVEEL+RLPECFLCYTPSPEAGPV PTPAL+NGFITFGSFNNLAKITPKVLQ
Sbjct: 620 DSPDSKQKHVEELVRLPECFLCYTPSPEAGPVSPTPALSNGFITFGSFNNLAKITPKVLQ 679
Query: 545 VWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 604
VWARIL A+PNSRLVVKCKPF CDSVR RFLSTLEQLGLE LRVDLLPLILLN+DHMQAY
Sbjct: 680 VWARILSAIPNSRLVVKCKPFSCDSVRERFLSTLEQLGLEPLRVDLLPLILLNYDHMQAY 739
Query: 605 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDE 664
SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS+L+ VGL +LIAKNE+E
Sbjct: 740 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSILSTVGLGNLIAKNEEE 799
Query: 665 YVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSL 724
YVQLA+QLASD+TAL+NLRMSLRDLMS+SPVCDG F LGLES YRNMW RYCKGDVPS
Sbjct: 800 YVQLAVQLASDITALSNLRMSLRDLMSRSPVCDGPKFTLGLESAYRNMWGRYCKGDVPSQ 859
Query: 725 KRMEMLQQQVVSEEP-SKFSEPTKIIFAKEGSPGSVMPNGFNQASPSMLNLSNIEENGV 782
+ ME+LQQ+V EEP +K +EP +I + G P S+ NGFN M NLS+ EENGV
Sbjct: 860 RHMEILQQEVTPEEPTTKIAEPIRI--TESGFPASIKSNGFNPCPTPMANLSSSEENGV 916
|
Source: Rosa lucieae Species: Rosa lucieae Genus: Rosa Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356505394|ref|XP_003521476.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1446 bits (3743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 674/776 (86%), Positives = 724/776 (93%)
Query: 5 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 64
SY KAL DPSYK AAECLAIVLTD+GT++KLAGNTQDGIQKY+EALK+DPHYAPAYYNL
Sbjct: 130 SYQKALQVDPSYKAAAECLAIVLTDIGTNIKLAGNTQDGIQKYFEALKVDPHYAPAYYNL 189
Query: 65 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124
GVVYSE+MQYDTAL YEKAA ERP+YAEAYCNMGVI+KNRGDLESAI CYERCL VSPN
Sbjct: 190 GVVYSEMMQYDTALSFYEKAASERPIYAEAYCNMGVIFKNRGDLESAITCYERCLTVSPN 249
Query: 125 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 184
FEIAKNNMAIALTDLGTKVKLEGDINQGV YKKALYYNWHYADAMYNLGVAYGEMLKFD
Sbjct: 250 FEIAKNNMAIALTDLGTKVKLEGDINQGVTLYKKALYYNWHYADAMYNLGVAYGEMLKFD 309
Query: 185 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 244
MAIVFYELAFHFNPHCAEACNNLGVIYKDR+NLDKAVECYQ+ALSIKPNFSQSLNNLGVV
Sbjct: 310 MAIVFYELAFHFNPHCAEACNNLGVIYKDRENLDKAVECYQLALSIKPNFSQSLNNLGVV 369
Query: 245 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304
YTVQGK+DAAA MIEKAI ANPTYAEAYNNLGVLYRDAG I+ AI+AYEQCLKIDPDSRN
Sbjct: 370 YTVQGKVDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGDIARAINAYEQCLKIDPDSRN 429
Query: 305 AGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDY 364
AGQNRLLAMNYI EGHDD LFE HRDWG+RFMRLY QYTSWDN+KDPERPLVIGYVSPDY
Sbjct: 430 AGQNRLLAMNYIEEGHDDTLFEVHRDWGRRFMRLYPQYTSWDNSKDPERPLVIGYVSPDY 489
Query: 365 FTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKK 424
FTHSVSYFIE PLVYHDY N+KV+VYSAVVKAD+KTIRFREKV+ KGGIW+DIYGIDEK+
Sbjct: 490 FTHSVSYFIETPLVYHDYSNFKVIVYSAVVKADSKTIRFREKVLNKGGIWKDIYGIDEKR 549
Query: 425 VAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLA 484
VA MVRED++DILVELTGHTA+NKLGMMAC+PAP+QVTWIGYPNTTGLPTIDYRITDSLA
Sbjct: 550 VANMVREDQVDILVELTGHTASNKLGMMACRPAPIQVTWIGYPNTTGLPTIDYRITDSLA 609
Query: 485 DPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQ 544
DPPETKQKHVEEL+RLPECFLCYTPSPEAGP+CPTPAL+NGF+TFGSFNNLAKITPKVLQ
Sbjct: 610 DPPETKQKHVEELVRLPECFLCYTPSPEAGPICPTPALSNGFVTFGSFNNLAKITPKVLQ 669
Query: 545 VWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 604
VWARILCA+PNSRLVVKCKPFC DSVR RFLSTLEQLGLE LRVDLLPLILLNHDHMQAY
Sbjct: 670 VWARILCAIPNSRLVVKCKPFCSDSVRQRFLSTLEQLGLEPLRVDLLPLILLNHDHMQAY 729
Query: 605 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDE 664
SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL+KVGL+HLIA+NEDE
Sbjct: 730 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLSKVGLEHLIARNEDE 789
Query: 665 YVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSL 724
YV+LA QLASD++AL NLRMSLR+LMSKSP+CDG F LGLESTYR MWHRYC+GDVPSL
Sbjct: 790 YVELAQQLASDISALQNLRMSLRNLMSKSPLCDGAKFILGLESTYRKMWHRYCRGDVPSL 849
Query: 725 KRMEMLQQQVVSEEPSKFSEPTKIIFAKEGSPGSVMPNGFNQASPSMLNLSNIEEN 780
KR+E+LQ+ + +K SEPT+I ++E SPGSV NG+N S LN+ EEN
Sbjct: 850 KRLELLQEVATGDLSNKNSEPTRIANSREDSPGSVKANGYNTIPASKLNIHTREEN 905
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224088480|ref|XP_002308458.1| predicted protein [Populus trichocarpa] gi|222854434|gb|EEE91981.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1442 bits (3733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 684/789 (86%), Positives = 732/789 (92%), Gaps = 9/789 (1%)
Query: 5 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 64
SYHKAL ADPSYKPA+ECLAIVLTDLGTSLKL+GNTQ+GIQKYY+ALK+DPHYAPAYYNL
Sbjct: 138 SYHKALKADPSYKPASECLAIVLTDLGTSLKLSGNTQEGIQKYYDALKVDPHYAPAYYNL 197
Query: 65 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124
GVVYSE+MQYDTAL CYEKAA+ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN
Sbjct: 198 GVVYSEMMQYDTALSCYEKAAIERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
Query: 125 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 184
FEIAKNNMAIALTDLGTKVKLEGDINQGV YYKKALYYNWHYADAMYNLGVAYGEMLKF+
Sbjct: 258 FEIAKNNMAIALTDLGTKVKLEGDINQGVTYYKKALYYNWHYADAMYNLGVAYGEMLKFE 317
Query: 185 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 244
MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ LSIKPNFSQSLNNLGVV
Sbjct: 318 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQATLSIKPNFSQSLNNLGVV 377
Query: 245 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304
YTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRD G+I++AI AYEQCL+IDPDSRN
Sbjct: 378 YTVQGKMDAAASMIEKAIMANPTYAEAYNNLGVLYRDVGNITMAISAYEQCLEIDPDSRN 437
Query: 305 AGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDY 364
AGQNRLLAMNYINEGHDDKLF+AHR+WG+RFMRLY Q+TSWDN K PERPLVIGYVSPDY
Sbjct: 438 AGQNRLLAMNYINEGHDDKLFQAHREWGRRFMRLYPQFTSWDNPKVPERPLVIGYVSPDY 497
Query: 365 FTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKK 424
FTHSVSYFIEAPLVYHDY NY VVVYSAVVK+DAKT RFREKV+KKGG+WRDIYGIDEKK
Sbjct: 498 FTHSVSYFIEAPLVYHDYANYMVVVYSAVVKSDAKTNRFREKVLKKGGMWRDIYGIDEKK 557
Query: 425 VAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLA 484
VA+M+REDK+DILVELTGHTANNKLGMMAC+PAPVQVTWIGYPNTTGLPTIDYRITDS
Sbjct: 558 VASMIREDKVDILVELTGHTANNKLGMMACRPAPVQVTWIGYPNTTGLPTIDYRITDSFT 617
Query: 485 DPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQ 544
DPP TKQKHVEEL+RLPECFLCY PSPEAGPV PTPAL+NGFITFGSFNNLAKITPKVLQ
Sbjct: 618 DPPHTKQKHVEELVRLPECFLCYIPSPEAGPVTPTPALSNGFITFGSFNNLAKITPKVLQ 677
Query: 545 VWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 604
VWARILCAVPNSRLVVKCKPF CDSVR RFL+ LEQLGLE LRVDLLPLILLNHDHMQAY
Sbjct: 678 VWARILCAVPNSRLVVKCKPFGCDSVRQRFLTVLEQLGLEPLRVDLLPLILLNHDHMQAY 737
Query: 605 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDE 664
SLMDISLDTFPYAGTTTTCESLYMGVPC+TMAG+VHAHNVGVSLL+KVGL HL+AKNE+E
Sbjct: 738 SLMDISLDTFPYAGTTTTCESLYMGVPCITMAGAVHAHNVGVSLLSKVGLGHLVAKNEEE 797
Query: 665 YVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSL 724
YVQLALQLASD++AL+NLRMSLR+LMSKSPVCDG NF LGLE+TYRNMWHRYCKGDVPSL
Sbjct: 798 YVQLALQLASDISALSNLRMSLRELMSKSPVCDGPNFTLGLETTYRNMWHRYCKGDVPSL 857
Query: 725 KRMEMLQQQVVSEE-PSKFSEPTKIIFAKEGS-------PGSVMPNGFNQASPSMLNLSN 776
+R+E+LQQQ + E+ P K S+ T I +++G P SV NGF+ SP +N S
Sbjct: 858 RRIELLQQQGIPEDVPIKNSDSTTITSSRDGPPESRDGLPESVKANGFSAVSPPTVNHS- 916
Query: 777 IEENGVQLN 785
EN Q+N
Sbjct: 917 CGENRSQVN 925
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356570865|ref|XP_003553604.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1439 bits (3724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 677/776 (87%), Positives = 722/776 (93%), Gaps = 1/776 (0%)
Query: 5 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 64
SY KAL DPSYK AAECLAIVLTD+GT++KLAGNTQDGIQKY+EALK+DPHYAPAYYNL
Sbjct: 129 SYQKALQVDPSYKAAAECLAIVLTDIGTNIKLAGNTQDGIQKYFEALKVDPHYAPAYYNL 188
Query: 65 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124
GVVYSE+MQYDTAL YEKAA ERP+YAEAYCNMGVI+KNRGDLESAI CYERCL VSPN
Sbjct: 189 GVVYSEMMQYDTALSFYEKAASERPVYAEAYCNMGVIFKNRGDLESAITCYERCLTVSPN 248
Query: 125 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 184
FEIAKNNMAIALTDLGTKVKLEGDINQGV YKKALYYNWHYADAMYNLGVAYGEMLKFD
Sbjct: 249 FEIAKNNMAIALTDLGTKVKLEGDINQGVTLYKKALYYNWHYADAMYNLGVAYGEMLKFD 308
Query: 185 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 244
MAIVFYELAFHFNPHCAEACNNLGVIYKDR+NLDKAVECYQ+ALSIKPNFSQSLNNLGVV
Sbjct: 309 MAIVFYELAFHFNPHCAEACNNLGVIYKDRENLDKAVECYQLALSIKPNFSQSLNNLGVV 368
Query: 245 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304
YTVQGK+DAAA MIEKAI ANPTYAEAYNNLGVLYRDAG I+ AI+AYEQCLKIDPDSRN
Sbjct: 369 YTVQGKVDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGDIARAINAYEQCLKIDPDSRN 428
Query: 305 AGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDY 364
AGQNRLLAMNYI EGHDD LFE HRDWG+RFMRLYSQYTSWDN+KDPERPLVIGYVSPDY
Sbjct: 429 AGQNRLLAMNYIEEGHDDTLFEVHRDWGRRFMRLYSQYTSWDNSKDPERPLVIGYVSPDY 488
Query: 365 FTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKK 424
FTHSVSYFIEAPLVYHDY N+KV+VYSAVVKAD+KTIRFREKV+ KGGIW+DIYGIDEK
Sbjct: 489 FTHSVSYFIEAPLVYHDYSNFKVIVYSAVVKADSKTIRFREKVVNKGGIWKDIYGIDEKM 548
Query: 425 VAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLA 484
VA MVRED++DILVELTGHTANNKLGMMAC+PAP+QVTWIGYPNTTGLPTIDYRITDSLA
Sbjct: 549 VANMVREDQVDILVELTGHTANNKLGMMACRPAPIQVTWIGYPNTTGLPTIDYRITDSLA 608
Query: 485 DPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQ 544
DPPETKQKHVEEL+RLPECFLCYTPS EAGPVCPTPAL+NGF+TFGSFNNLAKITPKVLQ
Sbjct: 609 DPPETKQKHVEELVRLPECFLCYTPSLEAGPVCPTPALSNGFVTFGSFNNLAKITPKVLQ 668
Query: 545 VWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 604
VW RILCA+PNSRLVVKCKPFC DSVR FLSTLEQLGLE LRVDLLPLILLNHDHMQAY
Sbjct: 669 VWVRILCAIPNSRLVVKCKPFCSDSVRQIFLSTLEQLGLEPLRVDLLPLILLNHDHMQAY 728
Query: 605 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDE 664
SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL+KVGL+HLIA+NEDE
Sbjct: 729 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLSKVGLEHLIARNEDE 788
Query: 665 YVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSL 724
YV+LA QLASD++AL NLRMSLR+LMSKSP+CDG F LGLESTYRNMWHRYC+GDVPSL
Sbjct: 789 YVELAQQLASDISALQNLRMSLRNLMSKSPLCDGAKFILGLESTYRNMWHRYCRGDVPSL 848
Query: 725 KRMEMLQQQVVSEEPSKFSEPTKIIFAKEGSPGSVMPNGFNQASPSMLNLSNIEEN 780
KRME+L Q + +K SEPT+I ++E SPGSV NGF S LN+ + EEN
Sbjct: 849 KRMELL-QVATGDLSNKNSEPTRIANSREDSPGSVKANGFKTRPVSKLNIHSCEEN 903
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534448|ref|XP_003535766.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1436 bits (3716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 682/783 (87%), Positives = 729/783 (93%), Gaps = 1/783 (0%)
Query: 5 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 64
SY KAL DPSYK AAECLAIVLTD+GT++KLAGNTQ+GIQKY+EALKIDPHYAPAYYNL
Sbjct: 137 SYQKALQVDPSYKAAAECLAIVLTDIGTNIKLAGNTQEGIQKYFEALKIDPHYAPAYYNL 196
Query: 65 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124
GVVYSE+MQYD AL YEKAA ERPMYAEAYCNMGVIYKNRGDLE+AI CYERCLAVSPN
Sbjct: 197 GVVYSEMMQYDMALTFYEKAASERPMYAEAYCNMGVIYKNRGDLEAAITCYERCLAVSPN 256
Query: 125 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 184
FEIAKNNMAIALTDLGTKVKLEGDIN+GVA+YKKAL+YNWHYADAMYNLGVAYGEMLKFD
Sbjct: 257 FEIAKNNMAIALTDLGTKVKLEGDINRGVAFYKKALHYNWHYADAMYNLGVAYGEMLKFD 316
Query: 185 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 244
MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ+AL IKPNFSQSLNNLGVV
Sbjct: 317 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQLALGIKPNFSQSLNNLGVV 376
Query: 245 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304
YTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG ISLAI+AYEQCLKIDPDSRN
Sbjct: 377 YTVQGKMDAAASMIEKAIIANPTYAEAYNNLGVLYRDAGDISLAINAYEQCLKIDPDSRN 436
Query: 305 AGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDY 364
AGQNRLLAMNYI+EG+DDKLFEAHRDWG+RFMRLY Q+TSWDN+KDPERPLVIGYVSPDY
Sbjct: 437 AGQNRLLAMNYIDEGNDDKLFEAHRDWGRRFMRLYPQFTSWDNSKDPERPLVIGYVSPDY 496
Query: 365 FTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKK 424
FTHSVSYFIEAPLVYHDY NYKV+VYSAVVKADAKTIRFREKV+KKGGIW+DIYG DEKK
Sbjct: 497 FTHSVSYFIEAPLVYHDYTNYKVIVYSAVVKADAKTIRFREKVLKKGGIWKDIYGTDEKK 556
Query: 425 VAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLA 484
VA MVR+D++DIL+ELTGHTANNKLGM+AC+PAPVQVTWIGYPNTTGLPTIDYRITDS A
Sbjct: 557 VADMVRQDQVDILIELTGHTANNKLGMLACRPAPVQVTWIGYPNTTGLPTIDYRITDSRA 616
Query: 485 DPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQ 544
DPPETKQKHVEEL+RLP+ FLCYTPSPEAGPVCPTPAL+NGF+TFGSFNNLAKITPKVLQ
Sbjct: 617 DPPETKQKHVEELVRLPDSFLCYTPSPEAGPVCPTPALSNGFVTFGSFNNLAKITPKVLQ 676
Query: 545 VWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 604
VWA+ILCA+PNSRLVVKCKPFCCDSVR RFLSTLE+LGLE LRVDLLPLILLNHDHMQAY
Sbjct: 677 VWAKILCAIPNSRLVVKCKPFCCDSVRQRFLSTLEKLGLEPLRVDLLPLILLNHDHMQAY 736
Query: 605 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDE 664
SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL+KVGL +LIAKNEDE
Sbjct: 737 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLSKVGLGNLIAKNEDE 796
Query: 665 YVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSL 724
YV+LAL+LASD++AL NLRMSLR+LMSKSP+CDG F LGLESTYR MW RYCKGDVP+L
Sbjct: 797 YVKLALKLASDISALQNLRMSLRELMSKSPLCDGAKFILGLESTYRQMWRRYCKGDVPAL 856
Query: 725 KRMEMLQQQV-VSEEPSKFSEPTKIIFAKEGSPGSVMPNGFNQASPSMLNLSNIEENGVQ 783
K ME+LQQ V + SK SEPT+ + EGSP SV NGF+ P LN N EENG
Sbjct: 857 KCMELLQQPVSSNNPSSKNSEPTRATNSSEGSPESVKANGFSSTQPPKLNFLNCEENGGS 916
Query: 784 LNQ 786
LN
Sbjct: 917 LNH 919
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140075|ref|XP_002323412.1| predicted protein [Populus trichocarpa] gi|222868042|gb|EEF05173.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1433 bits (3710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 679/769 (88%), Positives = 721/769 (93%), Gaps = 5/769 (0%)
Query: 5 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 64
SYHKAL AD SYKPA+ECLAIVLTDLGTSLKL+GNTQ+GIQKYYEALK+DPHYAPAYYNL
Sbjct: 138 SYHKALKADLSYKPASECLAIVLTDLGTSLKLSGNTQEGIQKYYEALKVDPHYAPAYYNL 197
Query: 65 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124
GVVYSE+MQYDTAL CYEKAA+ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN
Sbjct: 198 GVVYSEMMQYDTALSCYEKAAMERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
Query: 125 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 184
FEIAKNNMAIALTD GTKVKLEGDI+QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF+
Sbjct: 258 FEIAKNNMAIALTDFGTKVKLEGDISQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFE 317
Query: 185 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ----MALSIKPNFSQSLNN 240
MAIVFYELAF+FNPHCAEACNNLGVIYKDRDNLDKAVECYQ +LSIKPNFSQSLNN
Sbjct: 318 MAIVFYELAFNFNPHCAEACNNLGVIYKDRDNLDKAVECYQANSDTSLSIKPNFSQSLNN 377
Query: 241 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 300
LGVVYTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVLYRDAG+IS+AI AYEQCL+IDP
Sbjct: 378 LGVVYTVQGKMDAAASMIEKAIMANPTYAEAYNNLGVLYRDAGNISMAISAYEQCLEIDP 437
Query: 301 DSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYV 360
DSRNAGQNRLLAMNYINEGHDDKLFEAHRDWG+RFMRLY QYTSWDN K P+RPLVIGYV
Sbjct: 438 DSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGRRFMRLYPQYTSWDNPKVPDRPLVIGYV 497
Query: 361 SPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGI 420
SPDYFTHSVSYFIEAPLVYH Y NYKVVVYSAVVK DAKT RF+EKV+K+GGIWRDIYGI
Sbjct: 498 SPDYFTHSVSYFIEAPLVYHVYANYKVVVYSAVVKPDAKTNRFKEKVLKRGGIWRDIYGI 557
Query: 421 DEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRIT 480
DEKKVA MVREDK+DILVELTGHTANNKLGMMAC+PAPVQVTWIGYPNTTGLPTIDYRIT
Sbjct: 558 DEKKVAIMVREDKVDILVELTGHTANNKLGMMACRPAPVQVTWIGYPNTTGLPTIDYRIT 617
Query: 481 DSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITP 540
DS ADPP+TKQKHVEELIRLPECFLCY PSPEAGPV PTPAL+NGFITFGSFNNLAKITP
Sbjct: 618 DSFADPPDTKQKHVEELIRLPECFLCYIPSPEAGPVAPTPALSNGFITFGSFNNLAKITP 677
Query: 541 KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 600
KVLQVWARILCAVPNSRLVVKCKPFCCDSVR RFL+ LEQLGLE L VDLLPLILLNHDH
Sbjct: 678 KVLQVWARILCAVPNSRLVVKCKPFCCDSVRQRFLTMLEQLGLEPLHVDLLPLILLNHDH 737
Query: 601 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK 660
MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG+VHAHNVG SLL+ VGL HL+AK
Sbjct: 738 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGAVHAHNVGASLLSNVGLGHLVAK 797
Query: 661 NEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGD 720
NE+EYVQ ALQLASD+ AL+NLRMSLRDLMSKSPVCDG NF LGLE+TYRNMWHRYCKGD
Sbjct: 798 NEEEYVQSALQLASDIAALSNLRMSLRDLMSKSPVCDGPNFTLGLETTYRNMWHRYCKGD 857
Query: 721 VPSLKRMEMLQQQVVSEE-PSKFSEPTKIIFAKEGSPGSVMPNGFNQAS 768
VPSL+R+E+LQQQ V +E P K ++ T+I +++G P S+ NGF+ S
Sbjct: 858 VPSLRRIELLQQQEVPKEVPIKNTDSTRITSSRDGPPESIKANGFSAVS 906
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449526080|ref|XP_004170042.1| PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1427 bits (3695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 678/777 (87%), Positives = 726/777 (93%), Gaps = 2/777 (0%)
Query: 5 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 64
SY KAL DPSY+PAAECLA+VLTDLGTSLKL+GN+QDGIQKYYEALKIDPHYAPAYYNL
Sbjct: 138 SYQKALRVDPSYRPAAECLAVVLTDLGTSLKLSGNSQDGIQKYYEALKIDPHYAPAYYNL 197
Query: 65 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124
GVVYSE+MQYDTAL CYEKAA ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN
Sbjct: 198 GVVYSEMMQYDTALNCYEKAAFERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
Query: 125 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 184
FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK+ALYYNWHYADAMYNLGVAYGEMLKFD
Sbjct: 258 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKRALYYNWHYADAMYNLGVAYGEMLKFD 317
Query: 185 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 244
AIVFYELAFHFNPHCAEACNNLGVIYKD+DNLDKAVECYQ+ALSIKPNFSQSLNNLGVV
Sbjct: 318 TAIVFYELAFHFNPHCAEACNNLGVIYKDQDNLDKAVECYQLALSIKPNFSQSLNNLGVV 377
Query: 245 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304
YTVQGKMDAAA MIEKAI ANPTYAEAYNNLGVL+RDAG+I +A+DAYE+CLKIDPDSRN
Sbjct: 378 YTVQGKMDAAASMIEKAILANPTYAEAYNNLGVLHRDAGNIEMAVDAYERCLKIDPDSRN 437
Query: 305 AGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDY 364
AGQNRLLAMNY +EGH+DKL+EAHRDWG+RFMRLY QYTSWDN KDPERPLVIGYVSPDY
Sbjct: 438 AGQNRLLAMNYTDEGHEDKLYEAHRDWGRRFMRLYPQYTSWDNPKDPERPLVIGYVSPDY 497
Query: 365 FTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKK 424
FTHSVSYF+EAPLV+HDY NYKVVVYSAVVKADAKTIRFR+KV+K+GG+WRDIYGIDEKK
Sbjct: 498 FTHSVSYFVEAPLVHHDYANYKVVVYSAVVKADAKTIRFRDKVLKQGGVWRDIYGIDEKK 557
Query: 425 VAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLA 484
VA+MVREDK+DILVELTGHTANNKLGMMAC+PAPVQVTWIGYPNTTGLPTIDYRITD+L
Sbjct: 558 VASMVREDKVDILVELTGHTANNKLGMMACRPAPVQVTWIGYPNTTGLPTIDYRITDALT 617
Query: 485 DPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQ 544
DPP TKQKHVEEL+RLPECFLCYTPSPEAG V PAL+NGFITFGSFNNLAKITPKVL+
Sbjct: 618 DPPNTKQKHVEELVRLPECFLCYTPSPEAGSVSSAPALSNGFITFGSFNNLAKITPKVLE 677
Query: 545 VWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 604
VWARILCA+PNSRLVVKCKPFCCDSVR RFLSTLEQLGLES RVDLLPLILLNHDHMQAY
Sbjct: 678 VWARILCAIPNSRLVVKCKPFCCDSVRQRFLSTLEQLGLESQRVDLLPLILLNHDHMQAY 737
Query: 605 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDE 664
SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL+KVGL HL+AKNE+E
Sbjct: 738 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLSKVGLGHLVAKNEEE 797
Query: 665 YVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSL 724
YV+LALQLASDVTAL+NLRMSLR+LMSKSPVCDG NF LGLESTYR MWHRYCKGDVPSL
Sbjct: 798 YVKLALQLASDVTALSNLRMSLRNLMSKSPVCDGPNFILGLESTYRKMWHRYCKGDVPSL 857
Query: 725 KRMEMLQQQVVSEEPSKFSEPTKIIFAKEGSPGSVMPNGFNQASPSMLNLSNIEENG 781
+RME++QQ+ ++EE ++ I A + SP S NG S +L+ S ENG
Sbjct: 858 RRMEIVQQRELTEETITTTDSN--ITALKESPASTQSNGHCPVSLDVLDRSPCGENG 912
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 788 | ||||||
| TAIR|locus:2080722 | 914 | SPY "SPINDLY" [Arabidopsis tha | 0.970 | 0.836 | 0.831 | 0.0 | |
| UNIPROTKB|Q749Z1 | 585 | GSU2601 "TPR domain/SEC-C moti | 0.695 | 0.936 | 0.382 | 4.2e-102 | |
| TIGR_CMR|GSU_2601 | 585 | GSU_2601 "TPR domain/SEC-C mot | 0.695 | 0.936 | 0.382 | 4.2e-102 | |
| UNIPROTKB|Q608I2 | 699 | MCA1509 "TPR domain protein" [ | 0.781 | 0.881 | 0.319 | 3e-78 | |
| TAIR|locus:2103025 | 977 | SEC "secret agent" [Arabidopsi | 0.458 | 0.369 | 0.286 | 2.7e-68 | |
| UNIPROTKB|A5D7G1 | 1036 | OGT "OGT protein" [Bos taurus | 0.607 | 0.462 | 0.263 | 4.5e-63 | |
| UNIPROTKB|F1RSV2 | 1046 | OGT "UDP-N-acetylglucosamine-- | 0.607 | 0.457 | 0.263 | 4.7e-63 | |
| UNIPROTKB|P81436 | 1046 | OGT "UDP-N-acetylglucosamine-- | 0.607 | 0.457 | 0.263 | 4.7e-63 | |
| UNIPROTKB|O15294 | 1046 | OGT "UDP-N-acetylglucosamine-- | 0.607 | 0.457 | 0.263 | 5.9e-63 | |
| MGI|MGI:1339639 | 1046 | Ogt "O-linked N-acetylglucosam | 0.607 | 0.457 | 0.263 | 9.3e-63 |
| TAIR|locus:2080722 SPY "SPINDLY" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3432 (1213.2 bits), Expect = 0., P = 0.
Identities = 640/770 (83%), Positives = 691/770 (89%)
Query: 5 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 64
SY KAL AD SYKPAAECLAIVLTDLGTSLKLAGNTQ+GIQKYYEALKIDPHYAPAYYNL
Sbjct: 133 SYQKALMADASYKPAAECLAIVLTDLGTSLKLAGNTQEGIQKYYEALKIDPHYAPAYYNL 192
Query: 65 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124
GVVYSE+MQYD AL CYEKAALERPMYAEAYCNMGVIYKNRGDLE AI CYERCLAVSPN
Sbjct: 193 GVVYSEMMQYDNALSCYEKAALERPMYAEAYCNMGVIYKNRGDLEMAITCYERCLAVSPN 252
Query: 125 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 184
FEIAKNNMAIALTDLGTKVKLEGD+ QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD
Sbjct: 253 FEIAKNNMAIALTDLGTKVKLEGDVTQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 312
Query: 185 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 244
MAIVFYELAFHFNPHCAEACNNLGV+YKDRDNLDKAVECYQMALSIKPNF+QSLNNLGVV
Sbjct: 313 MAIVFYELAFHFNPHCAEACNNLGVLYKDRDNLDKAVECYQMALSIKPNFAQSLNNLGVV 372
Query: 245 YTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304
YTVQG NPTYAEA+NNLGVLYRDAG+I++AIDAYE+CLKIDPDSRN
Sbjct: 373 YTVQGKMDAAASMIEKAILANPTYAEAFNNLGVLYRDAGNITMAIDAYEECLKIDPDSRN 432
Query: 305 AGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDY 364
AGQNRLLAMNYINEG DDKLFEAHRDWG RF RL+ QYTSWDN KDPERP+ IGY+SPD+
Sbjct: 433 AGQNRLLAMNYINEGLDDKLFEAHRDWGWRFTRLHPQYTSWDNLKDPERPITIGYISPDF 492
Query: 365 FTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGGIWRDIYGIDEKK 424
FTHSVSYFIEAPL +HDY Y T RFR+KV+KKGG+W+DIYGIDEKK
Sbjct: 493 FTHSVSYFIEAPLTHHDYTKYKVVVYSAVVKADAKTYRFRDKVLKKGGVWKDIYGIDEKK 552
Query: 425 VAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLA 484
+A+MVREDKIDILVELTGHTANNKLG MAC+PAPVQVTWIGYPNTTGLPT+DYRITDSLA
Sbjct: 553 IASMVREDKIDILVELTGHTANNKLGTMACRPAPVQVTWIGYPNTTGLPTVDYRITDSLA 612
Query: 485 DPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQ 544
DPP+TKQK VEEL+RLP+CFLCYTPSPEAGPVCPTPAL+NGF+TFGSFNNLAKITPKVLQ
Sbjct: 613 DPPDTKQKQVEELVRLPDCFLCYTPSPEAGPVCPTPALSNGFVTFGSFNNLAKITPKVLQ 672
Query: 545 VWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 604
VWARILCAVPNSRLVVKCKPFCCDS+R RFL+TLEQLGLES RVDLLPLIL NHDHMQAY
Sbjct: 673 VWARILCAVPNSRLVVKCKPFCCDSIRQRFLTTLEQLGLESKRVDLLPLILFNHDHMQAY 732
Query: 605 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDE 664
SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGL HL+AKNEDE
Sbjct: 733 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLGHLVAKNEDE 792
Query: 665 YVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSL 724
YVQL++ LASDVTAL+ LRMSLRDLM+ SPVC+G +FA+GLES YRNMW +YCKG+VPSL
Sbjct: 793 YVQLSVDLASDVTALSKLRMSLRDLMAGSPVCNGPSFAVGLESAYRNMWKKYCKGEVPSL 852
Query: 725 KRMEMLQQQVVSEEP--SKFSEPTKIIFAKEGSPGSVMPNGFNQASPSML 772
+RMEMLQ++V ++P SK P+++ E +P S+ NG + PS L
Sbjct: 853 RRMEMLQKEV-HDDPLISKDLGPSRVSVTGEATP-SLKANG-SAPVPSSL 899
|
|
| UNIPROTKB|Q749Z1 GSU2601 "TPR domain/SEC-C motif domain protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1012 (361.3 bits), Expect = 4.2e-102, P = 4.2e-102
Identities = 211/552 (38%), Positives = 310/552 (56%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 226
A+ ++ G A+ DMA+ Y A P A+A NLGV+++ + LD+A ++
Sbjct: 35 AEMLWRAGNAHLAGGALDMALSCYREAVRLRPGFAQAHYNLGVVFQQKGLLDEAAASFRS 94
Query: 227 ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSIS 286
A+S +++++ NNLG + QG P +A AY+NLG R G +
Sbjct: 95 AISFNRDYAKAYNNLGYILATQGRLDESADCFNRAIAIEPGFAAAYHNLGTTLRHQGRLD 154
Query: 287 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWD 346
+ A+ I+P + L+ ++Y ++ D+ LF H WG++ + +
Sbjct: 155 ETLAAFRTAHAINPHDPVFHSDLLMMLHY-SDMDDETLFREHVRWGEQHAPAAASVPTHQ 213
Query: 347 NTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREK 406
+DP R L IGYVS D+ H V YF+ L HD + + R K
Sbjct: 214 CDRDPGRKLRIGYVSGDFGKHPVGYFLLPFLENHDRSQFEICCYSERGQRQEDDVTARIK 273
Query: 407 VMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGY 466
+WR G+ + VA M+R D IDILV+L GHTA+N+L + A +PAPVQVTW+GY
Sbjct: 274 --GHADLWRRTIGLGDAAVAEMIRADGIDILVDLAGHTAHNRLRVFALKPAPVQVTWLGY 331
Query: 467 PNTTGLPTIDYRITDSLADPPETKQK-HVEELIRLPECFLCYTPSPEAGPVCPTPALTNG 525
PNTTGL +DYRITD++ADPP + H E+LIRL + FLCYTP A PV P L
Sbjct: 332 PNTTGLRAMDYRITDAVADPPGSADALHTEQLIRLEQGFLCYTPPAGAPPVGEAPCLAGA 391
Query: 526 FITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLES 585
+TFGSFNNLAK++P+V+ W+ IL VP SRL++K K F ++ R R G+
Sbjct: 392 GVTFGSFNNLAKVSPQVIDAWSAILGRVPGSRLMLKFKGFADETCRRRVSDAFGARGVSP 451
Query: 586 LRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 645
R++L+ + +DH+ Y+ +D++LDTFPY GT TTC++L+MGVP +T G+ H VG
Sbjct: 452 DRLELVSFVENFNDHLALYNRLDLALDTFPYNGTATTCDALWMGVPVLTCCGTRHVARVG 511
Query: 646 VSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 705
S+LT +GL LI + +EY+ A LA+D LA LR +R ++ SP+CD FA +
Sbjct: 512 ASILTSLGLPELITHSPEEYISAAAALAADPARLAALRRDMRPRLAASPLCDPTGFARRM 571
Query: 706 ESTYRNMWHRYC 717
E+ R++W R+C
Sbjct: 572 ETALRDIWRRWC 583
|
|
| TIGR_CMR|GSU_2601 GSU_2601 "TPR domain/SEC-C motif domain protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1012 (361.3 bits), Expect = 4.2e-102, P = 4.2e-102
Identities = 211/552 (38%), Positives = 310/552 (56%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 226
A+ ++ G A+ DMA+ Y A P A+A NLGV+++ + LD+A ++
Sbjct: 35 AEMLWRAGNAHLAGGALDMALSCYREAVRLRPGFAQAHYNLGVVFQQKGLLDEAAASFRS 94
Query: 227 ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSIS 286
A+S +++++ NNLG + QG P +A AY+NLG R G +
Sbjct: 95 AISFNRDYAKAYNNLGYILATQGRLDESADCFNRAIAIEPGFAAAYHNLGTTLRHQGRLD 154
Query: 287 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWD 346
+ A+ I+P + L+ ++Y ++ D+ LF H WG++ + +
Sbjct: 155 ETLAAFRTAHAINPHDPVFHSDLLMMLHY-SDMDDETLFREHVRWGEQHAPAAASVPTHQ 213
Query: 347 NTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREK 406
+DP R L IGYVS D+ H V YF+ L HD + + R K
Sbjct: 214 CDRDPGRKLRIGYVSGDFGKHPVGYFLLPFLENHDRSQFEICCYSERGQRQEDDVTARIK 273
Query: 407 VMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGY 466
+WR G+ + VA M+R D IDILV+L GHTA+N+L + A +PAPVQVTW+GY
Sbjct: 274 --GHADLWRRTIGLGDAAVAEMIRADGIDILVDLAGHTAHNRLRVFALKPAPVQVTWLGY 331
Query: 467 PNTTGLPTIDYRITDSLADPPETKQK-HVEELIRLPECFLCYTPSPEAGPVCPTPALTNG 525
PNTTGL +DYRITD++ADPP + H E+LIRL + FLCYTP A PV P L
Sbjct: 332 PNTTGLRAMDYRITDAVADPPGSADALHTEQLIRLEQGFLCYTPPAGAPPVGEAPCLAGA 391
Query: 526 FITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLES 585
+TFGSFNNLAK++P+V+ W+ IL VP SRL++K K F ++ R R G+
Sbjct: 392 GVTFGSFNNLAKVSPQVIDAWSAILGRVPGSRLMLKFKGFADETCRRRVSDAFGARGVSP 451
Query: 586 LRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 645
R++L+ + +DH+ Y+ +D++LDTFPY GT TTC++L+MGVP +T G+ H VG
Sbjct: 452 DRLELVSFVENFNDHLALYNRLDLALDTFPYNGTATTCDALWMGVPVLTCCGTRHVARVG 511
Query: 646 VSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 705
S+LT +GL LI + +EY+ A LA+D LA LR +R ++ SP+CD FA +
Sbjct: 512 ASILTSLGLPELITHSPEEYISAAAALAADPARLAALRRDMRPRLAASPLCDPTGFARRM 571
Query: 706 ESTYRNMWHRYC 717
E+ R++W R+C
Sbjct: 572 ETALRDIWRRWC 583
|
|
| UNIPROTKB|Q608I2 MCA1509 "TPR domain protein" [Methylococcus capsulatus str. Bath (taxid:243233)] | Back alignment and assigned GO terms |
|---|
Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
Identities = 206/644 (31%), Positives = 315/644 (48%)
Query: 86 LER-PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 144
LER P A GV+ +G A+A + L +PN + N LG
Sbjct: 44 LERKPNDANILHLAGVVALRKGQNSRAVALISKALEYAPNESLYYFN-------LGNAYL 96
Query: 145 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP-HCAE- 202
+G I+ G+ + A + +A NLG+A E + A+ +E +P H A+
Sbjct: 97 ADGAIDLGIQALQDATRLDPERMEAWMNLGLALVEAKRHPEAVAAFERLLEIDPDHEADV 156
Query: 203 ----ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ--GXXXXXXX 256
A G++ K+ +D+ + + L + + + + + ++
Sbjct: 157 AFASALVGAGIMLKESAMVDRGISVLESKL--RDGYERYAAGVILARALEHRNRLSEAIR 214
Query: 257 XXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYI 316
NP + NNL G + A Y C+K PD +A L +NY
Sbjct: 215 QHQALLEANPEHIGIRNNLARCLVQLGRVEEARTHYRLCVKSAPDKYHAFSALLAGLNY- 273
Query: 317 NEGHDDKLFEAH-RDWGKRF-MRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSY-FI 373
+ EA R+W K+ + Y + N +DPERPL IGY+SPD H V + F+
Sbjct: 274 EPNLTAAMHEAEVRNWEKQLALPHYPVEPEFPNERDPERPLKIGYLSPDLRQHVVGHNFL 333
Query: 374 EAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDK 433
P++ H + R ++ WR ++G + +VAA++RED+
Sbjct: 334 --PVLEHRNREQFSVFCYHIGEKQDDMSR---RIAALADHWRHVHGASDDEVAALIREDR 388
Query: 434 IDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKH 493
+DILV+L+GHT++ + + A +PAPVQV+W+GY +TTGL T+D+ ITD + PP+ KQ
Sbjct: 389 VDILVDLSGHTSHTQPLVFARKPAPVQVSWLGYFDTTGLATMDWFITDPYSSPPDQKQYF 448
Query: 494 VEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAV 553
E L R+P L Y P P+ V PA NG+ITFG NNLAKI +VL +WA+IL A
Sbjct: 449 SERLYRMPHTRLYYHPYPDMPAVGQLPAKRNGYITFGCLNNLAKINTEVLDLWAQILAAS 508
Query: 554 PNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDT 613
P SRL+++ C RF + + GL+ R++L P L Q Y +DI+LD
Sbjct: 509 PTSRLLIQTVALCDRLNLERFRALCVERGLDPARLELRPATSLEK-FAQTYHQIDIALDP 567
Query: 614 FPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLA 673
FP+ G T+ ++L+MGVP +T+ A +S+L +GL HLIA N+ +YV +AL+L+
Sbjct: 568 FPFCGGFTSFDALWMGVPVITLEQQRLAGRQTLSMLMNLGLPHLIASNKTDYVSIALELS 627
Query: 674 SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYC 717
D + + LR LR +SP+ D F LE YR W +C
Sbjct: 628 RDSSEIEQLRSELRSRFLQSPLIDHCRFTRELEKAYRFFWSHWC 671
|
|
| TAIR|locus:2103025 SEC "secret agent" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 418 (152.2 bits), Expect = 2.7e-68, Sum P(2) = 2.7e-68
Identities = 108/377 (28%), Positives = 177/377 (46%)
Query: 355 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGGIW 414
L IGYVS D+ H +S+ + + H+ +N +R+++ + +
Sbjct: 592 LRIGYVSSDFGNHPLSHLMGSVFGMHNRENVEVFCYALSANDNT---EWRQRIQSEAEHF 648
Query: 415 RDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPT 474
D+ + +A ++ +DKI IL+ L G+T + + A QPAP+QV+++G+P TTG
Sbjct: 649 LDVSAMSSDAIAKIINQDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGATY 708
Query: 475 IDYRITDSLADPPETKQKHVEELIRLPECFLC--YTPS------PEAGPVCPTPALTNGF 526
IDY +TD P + + E+L+ LP C+ Y P + P L
Sbjct: 709 IDYLVTDEFVSPLQYAHIYSEKLVHLPHCYFVNDYKQKNQDVLDPNSKPKRSDYGLPEDK 768
Query: 527 ITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL 586
F FN L K+ P+++ W IL VPNS L + P +R R + + G++
Sbjct: 769 FIFACFNQLYKMDPEIVNTWCNILKRVPNSALWLLRFP-AAGEMRFRTYAAAQ--GVQPD 825
Query: 587 RVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGV 646
++ + + + +H++ L D+ LDT G TT + L+ GVP +T+ A V
Sbjct: 826 QI-IFTDVAMKSEHIRRSVLADVILDTPLCNGHTTGTDVLWAGVPMITLPLEKMATRVAG 884
Query: 647 SLLTKVGLKH-LIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 705
SL GL H +I + +EY + A+ LA + L L LR P+ D + L
Sbjct: 885 SLCLATGLGHGMIVNSLEEYEEKAVSLALNKPKLQALTKELRASRLTCPLFDTMRWVKNL 944
Query: 706 ESTYRNMWHRYCKGDVP 722
E +Y MW+ +C G P
Sbjct: 945 ERSYFKMWNLHCSGQQP 961
|
|
| UNIPROTKB|A5D7G1 OGT "OGT protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 456 (165.6 bits), Expect = 4.5e-63, Sum P(2) = 4.5e-63
Identities = 137/520 (26%), Positives = 236/520 (45%)
Query: 1 MLVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 60
+ + + KA++ DP++ A +LG LK A + Y AL + P++A
Sbjct: 199 LAIHHFEKAVTLDPNFLDA-------YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 251
Query: 61 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 120
+ NL VY E D A+ Y +A +P + +AYCN+ K +G + A CY L
Sbjct: 252 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 311
Query: 121 VSPNFEIAKNNMAIALTDLGTKVKLE-GDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 179
+ P + NN+A +K E G+I + V Y+KAL +A A NL +
Sbjct: 312 LCPTHADSLNNLA--------NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 363
Query: 180 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 239
K A++ Y+ A +P A+A +N+G K+ ++ A++CY A+ I P F+ + +
Sbjct: 364 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHS 423
Query: 240 NLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAID--AYEQCLK 297
NL ++ G P + +AY NL A + + D Y++ +K
Sbjct: 424 NLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNL------AHCLQIVCDWTDYDERMK 477
Query: 298 --IDPDSRNAGQNRLLAMN------Y-INEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNT 348
+ + +NRL +++ Y ++ G + E H + + + + +++
Sbjct: 478 KLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHK-PPYEHP 536
Query: 349 KD---PERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFRE 405
KD + L +GYVS D+ H S+ +++ H+ + FR
Sbjct: 537 KDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGT---NFRV 593
Query: 406 KVMKKGGIWRDIYGID-EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWI 464
KVM + + D+ I K A + +D I ILV + G+T + + A +PAP+Q W+
Sbjct: 594 KVMAEANHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWL 653
Query: 465 GYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECF 504
GYP T+G +DY ITD P E +++ E+L +P F
Sbjct: 654 GYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTF 693
|
|
| UNIPROTKB|F1RSV2 OGT "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 456 (165.6 bits), Expect = 4.7e-63, Sum P(2) = 4.7e-63
Identities = 137/520 (26%), Positives = 236/520 (45%)
Query: 1 MLVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 60
+ + + KA++ DP++ A +LG LK A + Y AL + P++A
Sbjct: 209 LAIHHFEKAVTLDPNFLDA-------YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 261
Query: 61 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 120
+ NL VY E D A+ Y +A +P + +AYCN+ K +G + A CY L
Sbjct: 262 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 321
Query: 121 VSPNFEIAKNNMAIALTDLGTKVKLE-GDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 179
+ P + NN+A +K E G+I + V Y+KAL +A A NL +
Sbjct: 322 LCPTHADSLNNLA--------NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 373
Query: 180 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 239
K A++ Y+ A +P A+A +N+G K+ ++ A++CY A+ I P F+ + +
Sbjct: 374 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHS 433
Query: 240 NLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAID--AYEQCLK 297
NL ++ G P + +AY NL A + + D Y++ +K
Sbjct: 434 NLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNL------AHCLQIVCDWTDYDERMK 487
Query: 298 --IDPDSRNAGQNRLLAMN------Y-INEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNT 348
+ + +NRL +++ Y ++ G + E H + + + + +++
Sbjct: 488 KLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHK-PPYEHP 546
Query: 349 KD---PERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFRE 405
KD + L +GYVS D+ H S+ +++ H+ + FR
Sbjct: 547 KDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGT---NFRV 603
Query: 406 KVMKKGGIWRDIYGID-EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWI 464
KVM + + D+ I K A + +D I ILV + G+T + + A +PAP+Q W+
Sbjct: 604 KVMAEANHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWL 663
Query: 465 GYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECF 504
GYP T+G +DY ITD P E +++ E+L +P F
Sbjct: 664 GYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTF 703
|
|
| UNIPROTKB|P81436 OGT "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit" [Oryctolagus cuniculus (taxid:9986)] | Back alignment and assigned GO terms |
|---|
Score = 456 (165.6 bits), Expect = 4.7e-63, Sum P(2) = 4.7e-63
Identities = 137/520 (26%), Positives = 236/520 (45%)
Query: 1 MLVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 60
+ + + KA++ DP++ A +LG LK A + Y AL + P++A
Sbjct: 209 LAIHHFEKAVTLDPNFLDA-------YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 261
Query: 61 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 120
+ NL VY E D A+ Y +A +P + +AYCN+ K +G + A CY L
Sbjct: 262 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 321
Query: 121 VSPNFEIAKNNMAIALTDLGTKVKLE-GDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 179
+ P + NN+A +K E G+I + V Y+KAL +A A NL +
Sbjct: 322 LCPTHADSLNNLA--------NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 373
Query: 180 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 239
K A++ Y+ A +P A+A +N+G K+ ++ A++CY A+ I P F+ + +
Sbjct: 374 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHS 433
Query: 240 NLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAID--AYEQCLK 297
NL ++ G P + +AY NL A + + D Y++ +K
Sbjct: 434 NLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNL------AHCLQIVCDWTDYDERMK 487
Query: 298 --IDPDSRNAGQNRLLAMN------Y-INEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNT 348
+ + +NRL +++ Y ++ G + E H + + + + +++
Sbjct: 488 KLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHK-PPYEHP 546
Query: 349 KD---PERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFRE 405
KD + L +GYVS D+ H S+ +++ H+ + FR
Sbjct: 547 KDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGT---NFRV 603
Query: 406 KVMKKGGIWRDIYGID-EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWI 464
KVM + + D+ I K A + +D I ILV + G+T + + A +PAP+Q W+
Sbjct: 604 KVMAEANHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWL 663
Query: 465 GYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECF 504
GYP T+G +DY ITD P E +++ E+L +P F
Sbjct: 664 GYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTF 703
|
|
| UNIPROTKB|O15294 OGT "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 456 (165.6 bits), Expect = 5.9e-63, Sum P(2) = 5.9e-63
Identities = 137/520 (26%), Positives = 236/520 (45%)
Query: 1 MLVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 60
+ + + KA++ DP++ A +LG LK A + Y AL + P++A
Sbjct: 209 LAIHHFEKAVTLDPNFLDA-------YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 261
Query: 61 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 120
+ NL VY E D A+ Y +A +P + +AYCN+ K +G + A CY L
Sbjct: 262 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 321
Query: 121 VSPNFEIAKNNMAIALTDLGTKVKLE-GDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 179
+ P + NN+A +K E G+I + V Y+KAL +A A NL +
Sbjct: 322 LCPTHADSLNNLA--------NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 373
Query: 180 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 239
K A++ Y+ A +P A+A +N+G K+ ++ A++CY A+ I P F+ + +
Sbjct: 374 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHS 433
Query: 240 NLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAID--AYEQCLK 297
NL ++ G P + +AY NL A + + D Y++ +K
Sbjct: 434 NLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNL------AHCLQIVCDWTDYDERMK 487
Query: 298 --IDPDSRNAGQNRLLAMN------Y-INEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNT 348
+ + +NRL +++ Y ++ G + E H + + + + +++
Sbjct: 488 KLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHK-PPYEHP 546
Query: 349 KD---PERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFRE 405
KD + L +GYVS D+ H S+ +++ H+ + FR
Sbjct: 547 KDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGT---NFRV 603
Query: 406 KVMKKGGIWRDIYGID-EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWI 464
KVM + + D+ I K A + +D I ILV + G+T + + A +PAP+Q W+
Sbjct: 604 KVMAEANHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWL 663
Query: 465 GYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECF 504
GYP T+G +DY ITD P E +++ E+L +P F
Sbjct: 664 GYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTF 703
|
|
| MGI|MGI:1339639 Ogt "O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 458 (166.3 bits), Expect = 9.3e-63, Sum P(2) = 9.3e-63
Identities = 137/520 (26%), Positives = 236/520 (45%)
Query: 1 MLVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 60
+ + + KA++ DP++ A +LG LK A + Y AL + P++A
Sbjct: 209 LAIHHFEKAVTLDPNFLDA-------YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 261
Query: 61 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 120
+ NL VY E D A+ Y +A +P + +AYCN+ K +G + A CY L
Sbjct: 262 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 321
Query: 121 VSPNFEIAKNNMAIALTDLGTKVKLE-GDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 179
+ P + NN+A +K E G+I + V Y+KAL +A A NL +
Sbjct: 322 LCPTHADSLNNLA--------NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 373
Query: 180 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 239
K A++ Y+ A +P A+A +N+G K+ ++ A++CY A+ I P F+ + +
Sbjct: 374 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHS 433
Query: 240 NLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAID--AYEQCLK 297
NL ++ G P + +AY NL A + + D Y++ +K
Sbjct: 434 NLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNL------AHCLQIVCDWTDYDERMK 487
Query: 298 --IDPDSRNAGQNRLLAMN------Y-INEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNT 348
+ + +NRL +++ Y ++ G + E H + + + + +++
Sbjct: 488 KLVSIVAEQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHK-PPYEHP 546
Query: 349 KD---PERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYXXXXXXXXXXXXXXTIRFRE 405
KD + L +GYVS D+ H S+ +++ H+ + FR
Sbjct: 547 KDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGT---NFRV 603
Query: 406 KVMKKGGIWRDIYGID-EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWI 464
KVM + + D+ I K A + +D I ILV + G+T + + A +PAP+Q W+
Sbjct: 604 KVMAEANHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWL 663
Query: 465 GYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECF 504
GYP T+G +DY ITD P E +++ E+L +P F
Sbjct: 664 GYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTF 703
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O82422 | SPY_HORVU | 2, ., 4, ., 1, ., - | 0.8534 | 0.9149 | 0.7637 | N/A | no |
| O82039 | SPY_PETHY | 2, ., 4, ., 1, ., - | 0.8531 | 0.9885 | 0.8358 | N/A | no |
| Q8LP10 | SPY_EUSER | 2, ., 4, ., 1, ., - | 0.8072 | 0.9695 | 0.8322 | N/A | no |
| Q96301 | SPY_ARATH | 2, ., 4, ., 1, ., - | 0.8725 | 0.9606 | 0.8282 | yes | no |
| Q6YZI0 | SPY_ORYSJ | 2, ., 4, ., 1, ., - | 0.8524 | 0.9175 | 0.7799 | yes | no |
| Q8RVB2 | SPY_SOLLC | 2, ., 4, ., 1, ., - | 0.8390 | 0.9911 | 0.8388 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 788 | |||
| COG3914 | 620 | COG3914, Spy, Predicted O-linked N-acetylglucosami | 7e-95 | |
| pfam13844 | 468 | pfam13844, Glyco_transf_41, Glycosyl transferase f | 1e-23 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-22 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 1e-21 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 3e-21 | |
| pfam13844 | 468 | pfam13844, Glyco_transf_41, Glycosyl transferase f | 2e-20 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 9e-20 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 6e-18 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 6e-16 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-15 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 3e-15 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 2e-14 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 7e-14 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 1e-13 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 4e-12 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 9e-12 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-11 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-11 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 5e-11 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-10 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 1e-10 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-10 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 2e-10 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 2e-10 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 3e-10 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 4e-10 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 2e-09 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 2e-09 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 4e-09 | |
| PRK02603 | 172 | PRK02603, PRK02603, photosystem I assembly protein | 7e-09 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 1e-08 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-08 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 5e-08 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 5e-08 | |
| PRK02603 | 172 | PRK02603, PRK02603, photosystem I assembly protein | 2e-07 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 3e-07 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 4e-07 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 4e-07 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 4e-07 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 5e-07 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 8e-07 | |
| CHL00033 | 168 | CHL00033, ycf3, photosystem I assembly protein Ycf | 1e-06 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 1e-06 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 2e-06 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 2e-06 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 4e-06 | |
| PRK12370 | 553 | PRK12370, PRK12370, invasion protein regulator; Pr | 4e-06 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 5e-06 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 7e-06 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 9e-06 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 1e-05 | |
| COG4785 | 297 | COG4785, NlpI, Lipoprotein NlpI, contains TPR repe | 1e-05 | |
| COG0790 | 292 | COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily | 1e-05 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 3e-05 | |
| CHL00033 | 168 | CHL00033, ycf3, photosystem I assembly protein Ycf | 3e-05 | |
| pfam13181 | 34 | pfam13181, TPR_8, Tetratricopeptide repeat | 3e-05 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 4e-05 | |
| COG4976 | 287 | COG4976, COG4976, Predicted methyltransferase (con | 6e-05 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 8e-05 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 8e-05 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 9e-05 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 1e-04 | |
| pfam13181 | 34 | pfam13181, TPR_8, Tetratricopeptide repeat | 1e-04 | |
| pfam13431 | 34 | pfam13431, TPR_17, Tetratricopeptide repeat | 1e-04 | |
| TIGR03939 | 800 | TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g | 1e-04 | |
| PRK02603 | 172 | PRK02603, PRK02603, photosystem I assembly protein | 2e-04 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 2e-04 | |
| COG2956 | 389 | COG2956, COG2956, Predicted N-acetylglucosaminyl t | 2e-04 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 3e-04 | |
| pfam13431 | 34 | pfam13431, TPR_17, Tetratricopeptide repeat | 3e-04 | |
| PRK11189 | 296 | PRK11189, PRK11189, lipoprotein NlpI; Provisional | 3e-04 | |
| pfam10373 | 276 | pfam10373, EST1_DNA_bind, Est1 DNA/RNA binding dom | 4e-04 | |
| COG4785 | 297 | COG4785, NlpI, Lipoprotein NlpI, contains TPR repe | 5e-04 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 5e-04 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 6e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 7e-04 | |
| PRK11447 | 1157 | PRK11447, PRK11447, cellulose synthase subunit Bcs | 7e-04 | |
| CHL00033 | 168 | CHL00033, ycf3, photosystem I assembly protein Ycf | 0.001 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 0.002 | |
| pfam13181 | 34 | pfam13181, TPR_8, Tetratricopeptide repeat | 0.002 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 0.003 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 0.003 | |
| COG4783 | 484 | COG4783, COG4783, Putative Zn-dependent protease, | 0.003 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 0.004 | |
| COG4235 | 287 | COG4235, COG4235, Cytochrome c biogenesis factor [ | 0.004 |
| >gnl|CDD|226428 COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 308 bits (791), Expect = 7e-95
Identities = 166/562 (29%), Positives = 248/562 (44%), Gaps = 56/562 (9%)
Query: 184 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY-QMALSIKPNFSQSLNNLG 242
+A + + NP A NL + A+ ++A + P+ ++ L +L
Sbjct: 84 TLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLI 143
Query: 243 VVYTVQ------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL--------- 287
Y + G+ A +E+A+ P Y L ++ S
Sbjct: 144 RFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWPEEAPTNLLSQ 203
Query: 288 ------AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQ 341
L DP A N+LL + N +
Sbjct: 204 LALFLGIYGFSLAYLADDPLKNLAIANQLLKILSQNAPELVR------------------ 245
Query: 342 YTSWDNTKDPE-RPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYS-AVVKADAK 399
+ D + L +GY+S D +H+V + + YHD ++V YS DA
Sbjct: 246 FPIRDENIKRNGKRLRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYSLGPPHTDAL 305
Query: 400 TIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPV 459
R V K W I +D+ ++A +R D IDILV+L GHT + + + A +PAP+
Sbjct: 306 QERISAAVEK----WYPIGRMDDAEIANAIRTDGIDILVDLDGHTVDTRCQVFAHRPAPI 361
Query: 460 QVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPT 519
QV+W+GYP TTG P +DY I+D PP ++ + E+L RLP CY P PV P
Sbjct: 362 QVSWLGYPATTGSPNMDYFISDPYTVPPTAEEYYSEKLWRLP---QCYQPVDGFEPVTPP 418
Query: 520 PA-----LTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRF 574
P+ L + F FNN KITP+V +W +IL AVPNS L++K + R
Sbjct: 419 PSRAQLGLPEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGG-DDAEINARL 477
Query: 575 LSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVT 634
E+ G++S R+ LP N DH Y + D+ LDT+PY G TT ++L+MGVP +T
Sbjct: 478 RDLAEREGVDSERLRFLP-PAPNEDHRARYGIADLVLDTYPYGGHTTASDALWMGVPVLT 536
Query: 635 MAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSP 694
G A G S+ T G+ L+A + +YV+ A+ SD +R L+ SP
Sbjct: 537 RVGEQFASRNGASIATNAGIPELVADSRADYVEKAVAFGSDRALRQQVRAELKRSRQTSP 596
Query: 695 VCDGQNFALGLESTYRNMWHRY 716
+ D + FA LE+ Y MW Y
Sbjct: 597 LFDPKAFARKLETLYWGMWSEY 618
|
Length = 620 |
| >gnl|CDD|206015 pfam13844, Glyco_transf_41, Glycosyl transferase family 41 | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-23
Identities = 59/187 (31%), Positives = 90/187 (48%), Gaps = 4/187 (2%)
Query: 527 ITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL 586
I + +FN L KI P LQ+W IL VPNS L + P ++ + ++GL
Sbjct: 286 IVYCNFNQLYKIDPSTLQMWVNILKRVPNSVLWLLRFPAVGEANIQAYAQ---EMGLPPR 342
Query: 587 RVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGV 646
R+ + + +H++ L D+ LDT G TT + L+ G P VTM A V
Sbjct: 343 RI-VFSNVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPLETLASRVAA 401
Query: 647 SLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLE 706
S LT +G LIAK+ EY +A++L +D L +R + + S + + + + LE
Sbjct: 402 SQLTTLGCPELIAKDRQEYEDIAVKLGTDREYLRKIRAKVWKARTSSTLFNTKQYCQDLE 461
Query: 707 STYRNMW 713
Y MW
Sbjct: 462 RLYLKMW 468
|
This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1. Length = 468 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 1e-22
Identities = 39/100 (39%), Positives = 59/100 (59%)
Query: 202 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 261
EA NLG +Y + D+A+E Y+ AL + P+ + + NL Y GK + A E EKA
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 262 IAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301
+ +P A+AY NLG+ Y G A++AYE+ L++DP+
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 96.1 bits (237), Expect = 1e-21
Identities = 78/283 (27%), Positives = 124/283 (43%), Gaps = 13/283 (4%)
Query: 44 IQKYYEALKIDPHYAPAYYNLGV-VYSELMQYDTALGCYEKAALERP--MYAEAYCNMGV 100
+ EAL A A G+ + L + AL E+A P A + +
Sbjct: 8 LAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLAL 67
Query: 101 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 160
G LE A+ E+ L + N+A AL +LG ++ G + + +KAL
Sbjct: 68 ALLKLGRLEEALELLEKALEL-----ELLPNLAEALLNLGLLLEALGKYEEALELLEKAL 122
Query: 161 -YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP---HCAEACNNLGVIYKDRDN 216
A E+ ++ A+ YE A +P AEA LG + +
Sbjct: 123 ALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR 182
Query: 217 LDKAVECYQMALSIKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 275
++A+E + AL + P+ +++L NLG++Y GK + A E EKA+ +P AEA NL
Sbjct: 183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNL 242
Query: 276 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINE 318
+L + G A++A E+ L++DPD N G LL + E
Sbjct: 243 ALLLLELGRYEEALEALEKALELDPDLYNLGLALLLLLAEALE 285
|
Length = 291 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 3e-21
Identities = 39/99 (39%), Positives = 56/99 (56%)
Query: 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 85
L +LG G+ + ++ Y +AL++DP A AYYNL Y +L +Y+ AL YEKA
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 86 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124
P A+AY N+G+ Y G E A+ YE+ L + PN
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|206015 pfam13844, Glyco_transf_41, Glycosyl transferase family 41 | Back alignment and domain information |
|---|
Score = 94.9 bits (236), Expect = 2e-20
Identities = 54/151 (35%), Positives = 82/151 (54%), Gaps = 4/151 (2%)
Query: 355 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIW 414
L IGYVS D+ H S+ +++ H+ +V Y+ + D T FR KVM + +
Sbjct: 1 LRIGYVSSDFGNHPTSHLMQSIPGMHNRSKVEVFCYA--LSPDDGT-NFRSKVMAESEHF 57
Query: 415 RDIYGID-EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLP 473
D+ I K A + +D I ILV + G+T + + A +PAP+QV W+GYP T+G
Sbjct: 58 VDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNEIFALRPAPIQVMWLGYPGTSGAT 117
Query: 474 TIDYRITDSLADPPETKQKHVEELIRLPECF 504
+DY ITDS+ P E ++ E+L +P F
Sbjct: 118 FMDYIITDSVTSPMELADQYSEKLAYMPHTF 148
|
This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1. Length = 468 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 9e-20
Identities = 38/99 (38%), Positives = 57/99 (57%)
Query: 135 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 194
AL +LG GD ++ + YY+KAL + ADA YNL AY ++ K++ A+ YE A
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 195 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 233
+P A+A NLG+ Y ++A+E Y+ AL + PN
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 6e-18
Identities = 34/100 (34%), Positives = 56/100 (56%)
Query: 168 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 227
+A+ NLG Y ++ +D A+ +YE A +P A+A NL Y ++A+E Y+ A
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 228 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 267
L + P+ +++ NLG+ Y GK + A E EKA+ +P
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 6e-16
Identities = 32/99 (32%), Positives = 45/99 (45%)
Query: 60 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 119
A NLG +Y +L YD AL YEKA P A+AY N+ Y G E A+ YE+ L
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 120 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 158
+ P+ A N+ +A LG + + +
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 2e-15
Identities = 77/337 (22%), Positives = 116/337 (34%), Gaps = 21/337 (6%)
Query: 2 LVASYH---KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 58
L +Y + L P+ A LA + L+L G + I AL +DP
Sbjct: 311 LEQAYQYLNQILKYAPNSHQARRLLASIQ------LRL-GRVDEAIATLSPALGLDPDDP 363
Query: 59 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 118
A LG Y L ++ A KA P A A +G+ ++GD AIA E
Sbjct: 364 AALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETA 423
Query: 119 LAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK-KALYYNWHYADAMYNLGVAY 177
+ P A + ++ G K + A +N LG Y
Sbjct: 424 AQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNL--------LGAIY 475
Query: 178 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 237
A +E A P A NL I N D A++ ++ L+I P ++
Sbjct: 476 LGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRA 535
Query: 238 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 297
+ L +Y G + A +EKA NP E L Y G + A+ +
Sbjct: 536 ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD 595
Query: 298 IDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKR 334
PDS A +L + G +K + +
Sbjct: 596 AAPDSPEAWL--MLGRAQLAAGDLNKAVSSFKKLLAL 630
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 3e-15
Identities = 75/295 (25%), Positives = 122/295 (41%), Gaps = 11/295 (3%)
Query: 23 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 82
A T LG S G+ + I A ++DP A L + Y Q+D AL +
Sbjct: 396 NAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAK 455
Query: 83 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA-IALTDLGT 141
K ++P A + +G IY +GDL A +E+ L++ P+F A N+A I +
Sbjct: 456 KLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQ---- 511
Query: 142 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA 201
EG+ + + ++K L + A+ L Y + A+ + E A NP
Sbjct: 512 ----EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEI 567
Query: 202 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 261
E L Y + L KA+ A P+ ++ LG G ++ A +K
Sbjct: 568 EPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKL 627
Query: 262 IAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA--GQNRLLAMN 314
+A P A A L Y + + AI + ++ L++ PD+ A G +LL
Sbjct: 628 LALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAA 682
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 2e-14
Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 4/157 (2%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 226
A L + Y E ++A + A +P A L + Y+ L+KA + ++
Sbjct: 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRR 90
Query: 227 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PTYAEAYNNLGVLYRDAGS 284
AL++ PN LNN G QGK + A + E+AI P A + N G+ AG
Sbjct: 91 ALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD 150
Query: 285 ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD 321
A + L+IDP + LA Y G
Sbjct: 151 FDKAEKYLTRALQIDPQRPES--LLELAELYYLRGQY 185
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 7e-14
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 236 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 295
++L NLG +Y G D A E EKA+ +P A+AY NL Y G A++ YE+
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 296 LKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 327
L++DPD+ A L + Y G ++ EA
Sbjct: 61 LELDPDNAKA--YYNLGLAYYKLGKYEEALEA 90
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 1e-13
Identities = 61/295 (20%), Positives = 108/295 (36%), Gaps = 29/295 (9%)
Query: 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 89
LG + AG+ + + + L + P A A L Y+ + Y A+ ++A +P
Sbjct: 607 LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKP 666
Query: 90 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN----FEI------AKNNMAIALTDL 139
EA + + ESA + P FE+ + + A+
Sbjct: 667 DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAY 726
Query: 140 GTKVKLEGDINQGVAYYKKALYYNWHYADAM-----------------YNLGVAYGEMLK 182
+K +Q +AL + + A+A+ L Y
Sbjct: 727 RKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKD 785
Query: 183 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 242
+D AI Y+ P A NNL +Y + + +A+E + AL + PN L+ LG
Sbjct: 786 YDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAERALKLAPNIPAILDTLG 844
Query: 243 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 297
+ +G+ D A ++ KA+ P A +L + G + A ++ L
Sbjct: 845 WLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 4e-12
Identities = 76/303 (25%), Positives = 117/303 (38%), Gaps = 48/303 (15%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
++ KALS +P + PAA LA + D+ GN D IQ++ + L IDP A
Sbjct: 485 REAFEKALSIEPDFFPAAANLARI--DIQE-----GNPDDAIQRFEKVLTIDPKNLRAIL 537
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 122
L +Y + A+ EKAA P E + Y +G L+ A+A +
Sbjct: 538 ALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA 597
Query: 123 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 182
P + A + LG GD+N+ V+ +KK L
Sbjct: 598 P-----DSPEAWLM--LGRAQLAAGDLNKAVSSFKKLL---------------------- 628
Query: 183 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 242
L P A A L Y N KA+ + AL +KP+ +++ L
Sbjct: 629 --------AL----QPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLA 676
Query: 243 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302
+ + ++A ++ + +P A + G LY AI AY + LK P S
Sbjct: 677 QLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS 736
Query: 303 RNA 305
+NA
Sbjct: 737 QNA 739
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 9e-12
Identities = 51/251 (20%), Positives = 91/251 (36%), Gaps = 27/251 (10%)
Query: 79 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN-----FEIAKNNMA 133
C +++ E + A Y + ++AI + L PN F + K +A
Sbjct: 16 ACGDQSPEE--LIEAA-----KSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLA 68
Query: 134 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI-VFYEL 192
GD +KAL + + L AY KF +
Sbjct: 69 ------------LGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGK 116
Query: 193 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 252
+ AE G+ Y L+ A + Y+ AL+I P + L + + + D
Sbjct: 117 TLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFD 176
Query: 253 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 312
A +I++ + A+P +A G L G+I LA+ AY + + + P++
Sbjct: 177 EARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATI 236
Query: 313 MNYINEGHDDK 323
+ I G ++
Sbjct: 237 L--IEAGEFEE 245
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 2e-11
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 235 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS-ISLAIDAYE 293
+++L NLG G D A E EKA+ +P AEAY NL + Y G A++ E
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62
Query: 294 QCLKIDP 300
+ L++DP
Sbjct: 63 KALELDP 69
|
Length = 69 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-11
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 56 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIAC 114
A A NLG +L YD A+ YEKA P AEAY N+ + Y G D E A+
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 115 YERCLAVSP 123
E+ L + P
Sbjct: 61 LEKALELDP 69
|
Length = 69 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 5e-11
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM-DAAAEMIE 259
AEA NLG + D+A+E Y+ AL + P+ +++ NL + Y GK + A E +E
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62
Query: 260 KAIAANP 266
KA+ +P
Sbjct: 63 KALELDP 69
|
Length = 69 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 1e-10
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+ Y KAL DP A +L + G ++ ++ Y +AL++DP A AYY
Sbjct: 20 LEYYEKALELDPDN-------ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYY 72
Query: 63 NLGVVYSELMQYDTALGCYEKA 84
NLG+ Y +L +Y+ AL YEKA
Sbjct: 73 NLGLAYYKLGKYEEALEAYEKA 94
|
Length = 100 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.9 bits (151), Expect = 1e-10
Identities = 52/183 (28%), Positives = 82/183 (44%), Gaps = 14/183 (7%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP---HYAP 59
+ KAL+ DP A LA+ L G+ ++ ++ Y +AL++DP A
Sbjct: 115 LELLEKALALDPDPDLAEALLALGA------LYELGDYEEALELYEKALELDPELNELAE 168
Query: 60 AYYNLGVVYSELMQYDTALGCYEKA-ALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 118
A LG + L +Y+ AL EKA L AEA N+G++Y G E A+ YE+
Sbjct: 169 ALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKA 228
Query: 119 LAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA----YYKKALYYNWHYADAMYNLG 174
L + P+ A N+A+ L +LG + + + + Y L A+A+ L
Sbjct: 229 LELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNLGLALLLLLAEALELLE 288
Query: 175 VAY 177
A
Sbjct: 289 KAD 291
|
Length = 291 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 2e-10
Identities = 68/318 (21%), Positives = 109/318 (34%), Gaps = 62/318 (19%)
Query: 50 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA-------ALERPMYAEAYCNMGVIY 102
AL+ DP+ A A + LG +Y L Y A KA P+ A AY G
Sbjct: 48 ALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGK-- 105
Query: 103 KNRGDLESAIACYERCLAVSPNFEIAKN-NMAIALTDLGTKVKLEGDINQGVAYYKKALY 161
+++ L P + + A L G G + Y++AL
Sbjct: 106 ------------FQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALA 153
Query: 162 YNWHYADAMYNLGVAYGEML--KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 219
+ A LG+A + +FD A + +P +A G + N++
Sbjct: 154 IDPRSLYAK--LGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIEL 211
Query: 220 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA------------------------ 255
A+ Y+ A++++PN L L + G+ + A
Sbjct: 212 ALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVD 271
Query: 256 ----------EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 305
E ++ A+ + P Y A G G++ A Q LK P+S A
Sbjct: 272 FQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQA 331
Query: 306 GQNRLLAMNYINEGHDDK 323
RLLA + G D+
Sbjct: 332 --RRLLASIQLRLGRVDE 347
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 2e-10
Identities = 43/156 (27%), Positives = 64/156 (41%), Gaps = 6/156 (3%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 226
A A L + Y + + A E A +P A Y+ D A E Y+
Sbjct: 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRK 94
Query: 227 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGVLYRDAG 283
ALS+ PN LNN G QG+ + A + E+A+A P Y ++ NLG+ AG
Sbjct: 95 ALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAG 153
Query: 284 SISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 319
A + ++ L++DP LA + G
Sbjct: 154 QFDQAEEYLKRALELDPQ--FPPALLELARLHYKAG 187
|
Length = 250 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-10
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 54 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL-------ERPMYAEAYCNMGVIYKNRG 106
P A A NL +V L YD AL EKA + P A A N+ +Y G
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60
Query: 107 DLESAIACYERCLAVSPN 124
D + A+ E+ LA+
Sbjct: 61 DYDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 3e-10
Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 5/160 (3%)
Query: 14 PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 73
S A + L G+ + + +AL+ DP AY L + Y +L +
Sbjct: 21 SSRTTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE 80
Query: 74 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 133
+ A + +A P + N G +G E A+ +E+ + P + A
Sbjct: 81 LEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE-DPLYP----QPA 135
Query: 134 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL 173
+L + G GD ++ Y +AL + +++ L
Sbjct: 136 RSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLEL 175
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 4e-10
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 232 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA-------ANPTYAEAYNNLGVLYRDAGS 284
P+ + +LNNL +V G D A E++EKA+ +P A A NNL LY G
Sbjct: 2 PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61
Query: 285 ISLAIDAYEQCLKIDPD 301
A++ E+ L +
Sbjct: 62 YDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 2e-09
Identities = 42/206 (20%), Positives = 75/206 (36%), Gaps = 45/206 (21%)
Query: 92 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 151
A+ + + Y +GDLE A ++ L P+ +A +A+ LG ++ +
Sbjct: 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLG-------ELEK 83
Query: 152 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 211
+++AL N + D + N G + K++ A+ +E A
Sbjct: 84 AEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQA-----------------I 126
Query: 212 KDRDNLDKAVECYQMALSIKPNFSQ---SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 268
+D P + Q SL N G+ G D A + + +A+ +P
Sbjct: 127 ED------------------PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR 168
Query: 269 AEAYNNLGVLYRDAGSISLAIDAYEQ 294
E+ L LY G A E+
Sbjct: 169 PESLLELAELYYLRGQYKDARAYLER 194
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 2e-09
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 197 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-------PNFSQSLNNLGVVYTVQG 249
+P A A NNL ++ + + D+A+E + AL + P +++LNNL +Y G
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60
Query: 250 KMDAAAEMIEKAIAANP 266
D A E +EKA+A
Sbjct: 61 DYDEALEYLEKALALRE 77
|
Length = 78 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 4e-09
Identities = 56/233 (24%), Positives = 88/233 (37%), Gaps = 11/233 (4%)
Query: 83 KAALER-PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 141
K AL++ P AEA +G IY GD +A + L++ L L
Sbjct: 46 KNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYP-------KNQVLPLLAR 98
Query: 142 KVKLEGDINQGVAYY-KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 200
L+G Q + K L + A+ + G+AY + + ++A YE A +P
Sbjct: 99 AYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRS 158
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 260
A L + + D+A L+ P +L G + G ++ A K
Sbjct: 159 LYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRK 218
Query: 261 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 313
AIA P L + +AG A + LK P+S A + L A+
Sbjct: 219 AIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLA--HYLKAL 269
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 7e-09
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 58 APAYYNLGVVYSELMQYDTALGCYEKA-ALERPMYAEAYC--NMGVIYKNRGDLESAIAC 114
A YY G+ +Y AL YE+A LE +Y NMG+IY + G+ + A+
Sbjct: 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEY 94
Query: 115 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 171
Y + L ++P A NN+A+ G K + GD ++ A + KA Y W A +
Sbjct: 95 YHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEY-WKQAIRLA 150
|
Length = 172 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 1e-08
Identities = 64/301 (21%), Positives = 116/301 (38%), Gaps = 9/301 (2%)
Query: 19 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 78
E A +L G + G + + Y +AL IDP A L + ++D A
Sbjct: 120 DDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEAR 179
Query: 79 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 138
++ P +A G + + G++E A+A Y + +A+ PN +A L +
Sbjct: 180 ALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIE 239
Query: 139 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 198
G + E + + + HY A+ V + + ++ A + A P
Sbjct: 240 AGEFEEAEKHADALLKKAPNSPLA--HYLKAL----VDFQKK-NYEDARETLQDALKSAP 292
Query: 199 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 258
A G NL++A + L PN Q+ L + G++D A +
Sbjct: 293 EYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATL 352
Query: 259 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINE 318
A+ +P A + LG Y G A + + ++DP+ NA L ++ +++
Sbjct: 353 SPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE--NAAARTQLGISKLSQ 410
Query: 319 G 319
G
Sbjct: 411 G 411
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 4e-08
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 92 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 151
AEA N+G GD + AI YE+ L + P+ A N+A+A LG + +
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYE------E 56
Query: 152 GVAYYKKAL 160
+ +KAL
Sbjct: 57 ALEDLEKAL 65
|
Length = 69 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 5e-08
Identities = 43/185 (23%), Positives = 70/185 (37%), Gaps = 13/185 (7%)
Query: 58 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 117
A L + Y E + A +KA P AY + + Y+ G+LE A + R
Sbjct: 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRR 90
Query: 118 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA----LYYNWHYADAMYNL 173
L ++PN NN GT + +G Q + +++A LY A ++ N
Sbjct: 91 ALTLNPNNGDVLNN-------YGTFLCQQGKYEQAMQQFEQAIEDPLYP--QPARSLENA 141
Query: 174 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 233
G+ + FD A + A +P E+ L +Y R A +
Sbjct: 142 GLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQ 201
Query: 234 FSQSL 238
++SL
Sbjct: 202 TAESL 206
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 5e-08
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 165 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY-KDRDNLDKAVEC 223
A+A+ NLG A ++ +D AI YE A +P AEA NL + Y K + ++A+E
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 224 YQMALSIKP 232
+ AL + P
Sbjct: 61 LEKALELDP 69
|
Length = 69 |
| >gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 42/144 (29%), Positives = 60/144 (41%), Gaps = 41/144 (28%)
Query: 154 AYYKKAL--YYNWHYADAMYNLGVAYGEMLK-----FDMAIVFYELAFHFNPHCAEACNN 206
YY+ + + YA+A+ N Y E LK D + + Y N
Sbjct: 37 VYYRDGMSAQADGEYAEALEN----YEEALKLEEDPNDRSYILY---------------N 77
Query: 207 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM--------------D 252
+G+IY DKA+E Y AL + P +LNN+ V+Y +G+ D
Sbjct: 78 MGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFD 137
Query: 253 AAAEMIEKAIAANP-TYAEAYNNL 275
AAE ++AI P Y EA N L
Sbjct: 138 KAAEYWKQAIRLAPNNYIEAQNWL 161
|
Length = 172 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 3e-07
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 23 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL-MQYDTALGCY 81
A L +LG +L G+ + I+ Y +AL++DP A AYYNL + Y +L Y+ AL
Sbjct: 2 NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61
Query: 82 EKA 84
EKA
Sbjct: 62 EKA 64
|
Length = 69 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 4e-07
Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 11/129 (8%)
Query: 8 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 67
KAL DP A LA+ LG + + AL ++P+ N G
Sbjct: 56 KALEHDPDDYLAYLALALYYQQLG-------ELEKAEDSFRRALTLNPNNGDVLNNYGTF 108
Query: 68 YSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124
+ +Y+ A+ +E+A +E P+Y A + N G+ GD + A R L + P
Sbjct: 109 LCQQGKYEQAMQQFEQA-IEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ 167
Query: 125 FEIAKNNMA 133
+ +A
Sbjct: 168 RPESLLELA 176
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 4e-07
Identities = 19/73 (26%), Positives = 33/73 (45%)
Query: 88 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 147
P A A N+ ++ + GD + A+ E+ L ++ A AL +L G
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60
Query: 148 DINQGVAYYKKAL 160
D ++ + Y +KAL
Sbjct: 61 DYDEALEYLEKAL 73
|
Length = 78 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 4e-07
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 234
A+A NLG Y D+A+E Y+ AL + PN
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 5e-07
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 92 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 125
A+A N+G Y G + A+ YE+ L ++PN
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 8e-07
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 23 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-------DPHYAPAYYNLGVVYSELMQYD 75
LA L +L L+ G+ + ++ +AL++ P A A NL +Y L YD
Sbjct: 4 LAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYD 63
Query: 76 TALGCYEKA 84
AL EKA
Sbjct: 64 EALEYLEKA 72
|
Length = 78 |
| >gnl|CDD|176974 CHL00033, ycf3, photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 15/85 (17%)
Query: 206 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK--------------M 251
N+G+I+ KA+E Y AL P Q+LNN+ V+ +G+
Sbjct: 77 NIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWF 136
Query: 252 DAAAEMIEKAIAANPT-YAEAYNNL 275
D AAE ++AIA P Y EA N L
Sbjct: 137 DQAAEYWKQAIALAPGNYIEAQNWL 161
|
Length = 168 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 92 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 125
AEA N+G Y GD + A+ YE+ L + PN
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 2e-06
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 234
AEA NLG Y + D+A+E Y+ AL + PN
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-06
Identities = 18/55 (32%), Positives = 22/55 (40%)
Query: 248 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302
G D A +E A+A P AEA LG G ++ A L DPD
Sbjct: 10 AGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPDD 64
|
Length = 65 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 4e-06
Identities = 35/136 (25%), Positives = 52/136 (38%), Gaps = 5/136 (3%)
Query: 28 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 87
L G+ + +AL+ DP Y A+ Y +L + D A Y KA
Sbjct: 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL 98
Query: 88 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 147
P + N G +G E A+ +ER LA P + + L +LG G
Sbjct: 99 APNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAY----GEPSDTLENLGLCALKAG 153
Query: 148 DINQGVAYYKKALYYN 163
+Q Y K+AL +
Sbjct: 154 QFDQAEEYLKRALELD 169
|
Length = 250 |
| >gnl|CDD|237080 PRK12370, PRK12370, invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 4e-06
Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 13/150 (8%)
Query: 198 PHCAEACNNLGV----IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 253
P+CA A L + I+ ++ + KA E A + N Q+L LG++ T+ +
Sbjct: 297 PYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIV 356
Query: 254 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 313
+ + ++A +P A+ G AG + A+ +CLK+DP AG +L +
Sbjct: 357 GSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLW-I 415
Query: 314 NYINEGHDDKLFEAHRDWGKRFMRLYSQYT 343
Y + G DD + L SQ+
Sbjct: 416 TYYHTGIDDAIRLG--------DELRSQHL 437
|
Length = 553 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 5e-06
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 269 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301
A+A NLG Y G A++ YE+ L+++P+
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPN 33
|
Length = 34 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 7e-06
Identities = 39/178 (21%), Positives = 64/178 (35%), Gaps = 5/178 (2%)
Query: 136 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 195
+ L T + L GD + +A +K+ + + G F A+ A
Sbjct: 69 IAKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR 128
Query: 196 FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 255
P EA N LG D+A Y+ AL + PN NNLG+ ++G ++ A
Sbjct: 129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAE 188
Query: 256 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 313
++ A + + NL ++ G A D Q N + A+
Sbjct: 189 TLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ-----ELLSEQAANNVAAL 241
|
Length = 257 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 9e-06
Identities = 27/130 (20%), Positives = 47/130 (36%)
Query: 7 HKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGV 66
+L+ A +L G + GN + + +A ++ P A+ LG
Sbjct: 83 DSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGA 142
Query: 67 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 126
+L ++D A Y +A P N+G+ RGDLE A
Sbjct: 143 ALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADS 202
Query: 127 IAKNNMAIAL 136
+ N+A+ +
Sbjct: 203 RVRQNLALVV 212
|
Length = 257 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 1e-05
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 269 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301
AEA NLG Y G A++ YE+ L++DP+
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|227124 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 14/114 (12%)
Query: 242 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301
GV+Y G A +A+A P E +N LG+ AG+ A +A++ L++DP
Sbjct: 72 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 131
Query: 302 SRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPL 355
A NR +A+ Y G KL A D + Y D+ DP R L
Sbjct: 132 YNYAHLNRGIALYY---GGRYKL--AQDD----LLAFYQ-----DDPNDPFRSL 171
|
Length = 297 |
| >gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 1e-05
Identities = 44/180 (24%), Positives = 67/180 (37%), Gaps = 19/180 (10%)
Query: 57 YAPAYYNLGVVYSELM----QYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDL 108
A A LG +Y A Y AA + AEA N+G++Y N DL
Sbjct: 72 DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD--GLAEALFNLGLMYANGRGVPLDL 129
Query: 109 ESAIACYER-CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 167
A+ YE+ + +A + +A + + D + + Y+KA
Sbjct: 130 VKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NP 187
Query: 168 DAMYNLGVAY----GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 223
DA LG Y G A +Y+ A AC NLG++Y + + + KA
Sbjct: 188 DAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLGLMYLNGEGVKKAAFL 245
|
Length = 292 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 41/181 (22%), Positives = 67/181 (37%), Gaps = 23/181 (12%)
Query: 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81
L L A + Q EA K A L + Y + Y A
Sbjct: 9 SLVFSLALGACVTDPAPSRQTDRN---EAAK-------ARLQLALGYLQQGDYAQAKKNL 58
Query: 82 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 141
EKA P Y A+ Y+ G+ + A Y + L+++PN NN G
Sbjct: 59 EKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNN-------YGA 111
Query: 142 KVKLEGDINQGVAYYKKAL----YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 197
+ +G + + +++AL Y +D + NLG+ + +FD A + + A +
Sbjct: 112 FLCAQGRPEEAMQQFERALADPAYG--EPSDTLENLGLCALKAGQFDQAEEYLKRALELD 169
Query: 198 P 198
P
Sbjct: 170 P 170
|
Length = 250 |
| >gnl|CDD|176974 CHL00033, ycf3, photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 9/87 (10%)
Query: 31 GTSLKLAGNTQDGIQKYYEALK--IDPHYAPAY--YNLGVVYSELMQYDTALGCYEKAAL 86
G S + G + +Q YYEA++ IDP Y +Y YN+G++++ ++ AL Y AL
Sbjct: 42 GMSAQSEGEYAEALQNYYEAMRLEIDP-YDRSYILYNIGLIHTSNGEHTKALE-YYFQAL 99
Query: 87 ER-PMYAEAYCNMGVIYKNRGDLESAI 112
ER P +A NM VI RG E AI
Sbjct: 100 ERNPFLPQALNNMAVICHYRG--EQAI 124
|
Length = 168 |
| >gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 92 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 125
A AY +G IY GD E A YE+ L + PN
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34
|
Length = 34 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 4e-05
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAF-------HFNPHCAEACNNLGVIYKDRDNLDK 219
A A+ NL + + +D A+ E A +P A A NNL +Y + D+
Sbjct: 5 AAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDE 64
Query: 220 AVECYQMALSIKPN 233
A+E + AL+++
Sbjct: 65 ALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|227310 COG4976, COG4976, Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 6e-05
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 249 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 308
G +AAAE+ +A+ P +A + LG AG A AYE+ L++DP+
Sbjct: 9 GDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAAL 68
Query: 309 RLLAM 313
+L +
Sbjct: 69 KLAVL 73
|
Length = 287 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 8e-05
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 131 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK-FDMAIVF 189
+ A AL +LG + GD ++ + Y+KAL + A+A YNL +AY ++ K ++ A+
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 190 YELAFHFNP 198
E A +P
Sbjct: 61 LEKALELDP 69
|
Length = 69 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 8e-05
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 92 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 125
AEA N+G+ Y GD E A+ YE+ L + PN
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 9e-05
Identities = 38/154 (24%), Positives = 57/154 (37%), Gaps = 18/154 (11%)
Query: 8 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 67
KAL DPSY A A LG LA + Y +AL + P+ N G
Sbjct: 60 KALEHDPSYYLAHLVRAHYYQKLG-ENDLAD------ESYRKALSLAPNNGDVLNNYGAF 112
Query: 68 YSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124
+ + A+ +E+A L P Y ++ N+G+ G + A +R L + P
Sbjct: 113 LCAQGRPEEAMQQFERA-LADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ 171
Query: 125 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 158
F A +A GD Y ++
Sbjct: 172 FPPALLELARLH-------YKAGDYAPARLYLER 198
|
Length = 250 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 1e-04
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 207 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 266
L + D+A+ + AL+ P +++L LG QG++ AA ++ A+AA+P
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62
Query: 267 TYA 269
Sbjct: 63 DDP 65
|
Length = 65 |
| >gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 269 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302
A AY LG +Y G A + YE+ L++DP++
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34
|
Length = 34 |
| >gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 1e-04
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 47 YYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 78
Y +AL++DP+ A AYYNL ++ L QYD AL
Sbjct: 2 YEKALELDPNNAEAYYNLALLLLNLGQYDEAL 33
|
Length = 34 |
| >gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 1/127 (0%)
Query: 206 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 265
L Y++ DKA+E Y+ L PN L L + GK A + +++ +A
Sbjct: 91 ALAKAYRNEKQWDKALELYRKLLQRDPNNPDGLLGLALTLADAGKDAEALKYLKEYVARF 150
Query: 266 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH-DDKL 324
PT A Y L + R A A+ A++Q L ++PD+ A + + +L
Sbjct: 151 PTDAARYEALAYVLRAAEDHLDALQAWQQALTLEPDNPEAALELYRILTRLGAPPAAARL 210
Query: 325 FEAHRDW 331
+ + D
Sbjct: 211 AKQYPDL 217
|
Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800 |
| >gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 17/109 (15%)
Query: 219 KAVECYQMALSIKPN---FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 275
+A+E Y+ AL ++ + S L N+G++Y G+ D A E +A+ NP A NN+
Sbjct: 53 EALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112
Query: 276 GVLYRDAGSIS--------------LAIDAYEQCLKIDPDSRNAGQNRL 310
V+Y G + A + ++Q +++ P++ QN L
Sbjct: 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWL 161
|
Length = 172 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 2e-04
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 58 APAYYNLGVVYSELMQYDTALGCYEKA 84
A A YNLG Y +L +YD AL YEKA
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKA 27
|
Length = 34 |
| >gnl|CDD|225504 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 49/234 (20%), Positives = 92/234 (39%), Gaps = 42/234 (17%)
Query: 73 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 132
Q D A+ + + E P EA+ +G ++++RG+++ AI ++ L SP+ + +
Sbjct: 50 QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQT-LLESPDLTFEQRLL 108
Query: 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 192
A L LG Y A + A+ ++N V GE +
Sbjct: 109 A--LQQLGRD-------------YMAAGLLD--RAEDIFNQLVDEGEFAE---------- 141
Query: 193 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP-----NFSQSLNNLGVVYTV 247
A L IY+ +KA++ + + + +Q L
Sbjct: 142 ---------GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192
Query: 248 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301
+D A E+++KA+ A+ A LG + G A++A E+ L+ +P+
Sbjct: 193 SSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPE 246
|
Length = 389 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 3e-04
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 234
AEA NLG+ Y + ++A+E Y+ AL + PN
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 3e-04
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 257 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 289
+ EKA+ +P AEAY NL +L + G A+
Sbjct: 1 LYEKALELDPNNAEAYYNLALLLLNLGQYDEAL 33
|
Length = 34 |
| >gnl|CDD|236875 PRK11189, PRK11189, lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 227 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV-LYRDAGSI 285
AL+++P+ + + N LG+ T G DAA E + + +PTY AY N G+ LY G
Sbjct: 90 ALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG-GRY 148
Query: 286 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSW 345
LA D + DP+ R L + Y+ E D +A + +R+ +L + W
Sbjct: 149 ELAQDDLLAFYQDDPND----PYRALWL-YLAESKLDPK-QAKENLKQRYEKLDKEQWGW 202
Query: 346 D 346
+
Sbjct: 203 N 203
|
Length = 296 |
| >gnl|CDD|220721 pfam10373, EST1_DNA_bind, Est1 DNA/RNA binding domain | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 23/62 (37%), Positives = 29/62 (46%)
Query: 77 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 136
AL Y A+L P E Y +GVI G+ A+ Y R LAV F AKNN+ +
Sbjct: 1 ALRYYLLASLLLPSSGEPYNQLGVIALYVGNHLDAVYYYLRSLAVRNPFPTAKNNLELLF 60
Query: 137 TD 138
Sbjct: 61 EK 62
|
Est1 is a protein which recruits or activates telomerase at the site of polymerisation. This is the DNA/RNA binding domain of EST1. Length = 276 |
| >gnl|CDD|227124 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 5e-04
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 227 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 286
AL+I+P+ + N LG+ T G DAA E + + +PTY A+ N G+ G
Sbjct: 91 ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYK 150
Query: 287 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINE-GHDDKLFEAHRDWGKRFMRLYSQYTSW 345
LA D + DP+ R L + Y+NE D K +A + +R + + W
Sbjct: 151 LAQDDLLAFYQDDPND----PFRSLWL-YLNEQKLDPK--QAKTNLKQRAEKSDKEQWGW 203
|
Length = 297 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 5e-04
Identities = 59/274 (21%), Positives = 110/274 (40%), Gaps = 35/274 (12%)
Query: 12 ADPSYKPAAECL--AIVLTDLGTSLKLA-----------GNTQDGIQKYYEALKIDPHYA 58
AD SY+ AA A+ L LG +A G + + +++++DP
Sbjct: 306 ADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365
Query: 59 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 118
+Y + EL D A ++KA + Y + ++ +G+ A Y++
Sbjct: 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKS 425
Query: 119 LAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 178
+ + P+F + LG EG I +A +++ N+ A +YN YG
Sbjct: 426 IDLDPDF-------IFSHIQLGVTQYKEGSIASSMATFRRCK-KNFPEAPDVYNY---YG 474
Query: 179 EML----KFDMAIVFYELAFHFNPHCAEACNNLG-------VIYKDRDNLDKAVECYQMA 227
E+L KFD AI ++ A N+ +++ + + +A + A
Sbjct: 475 ELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKA 534
Query: 228 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 261
L I P ++ + + QG +D A ++ E+A
Sbjct: 535 LIIDPECDIAVATMAQLLLQQGDVDEALKLFERA 568
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 6e-04
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 269 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301
AEA NLG+ Y G A++AYE+ L++DP+
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 7e-04
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 269 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 323
AEA NLG G AI+AYE+ L++DPD+ A N A+ Y+ G D +
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNL--ALAYLKLGKDYE 55
|
Length = 69 |
| >gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 7e-04
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 248 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 307
G+ A +++A+ ANP +EA LG Y G + A+ +E+ L +DP S N +
Sbjct: 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDK 341
Query: 308 -NRLLAMN-Y---INEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNT 348
LL +N Y I +G D +A+ RLY Q DNT
Sbjct: 342 WESLLKVNRYWLLIQQG--DAALKANNLAQAE--RLYQQARQVDNT 383
|
Length = 1157 |
| >gnl|CDD|176974 CHL00033, ycf3, photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.001
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 58 APAYYNLGVVYSELMQYDTALGCYEKAA-LERPMYAEAYC--NMGVIYKNRGDLESAIAC 114
A YY G+ +Y AL Y +A LE Y +Y N+G+I+ + G+ A+
Sbjct: 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94
Query: 115 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 167
Y + L +P A NNMA+ G + +GD A++ +A Y W A
Sbjct: 95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEY-WKQA 146
|
Length = 168 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 200
A A+YNLG AY ++ K+D A+ +YE A NP+
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.002
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 234
A A LG IY + ++A E Y+ AL + PN
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34
|
Length = 34 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 16/27 (59%), Positives = 17/27 (62%)
Query: 58 APAYYNLGVVYSELMQYDTALGCYEKA 84
A A YNLG Y +L YD AL YEKA
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKA 27
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.003
Identities = 13/61 (21%), Positives = 18/61 (29%)
Query: 29 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 88
L + AG+ + + AL P A A LG + A A
Sbjct: 2 ALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAAD 61
Query: 89 P 89
P
Sbjct: 62 P 62
|
Length = 65 |
| >gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 33/158 (20%), Positives = 58/158 (36%), Gaps = 13/158 (8%)
Query: 141 TKVKLEGDINQGVAYYKKALYYNWH---YADAMYNLGVAYGEMLKFDMAI-VFYEL--AF 194
+ K E NQ L A Y + ++D A+ + L A
Sbjct: 281 IRAKYEALPNQ----QAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ 336
Query: 195 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 254
NP+ E G I + + +A+E + AL++ PN NL GK A
Sbjct: 337 PDNPYYLEL---AGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393
Query: 255 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 292
++ + + +P ++ L Y + G+ + A+ A
Sbjct: 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR 431
|
Length = 484 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 235 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 268
+++L NLG Y GK D A E EKA+ NP
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 250 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 305
+M+A +E + NP AE ++ LG Y G S A+ AY L++ D+
Sbjct: 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI 192
|
Length = 287 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 788 | |||
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 100.0 | |
| PF13844 | 468 | Glyco_transf_41: Glycosyl transferase family 41; P | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.96 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.96 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.95 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.95 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.94 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.94 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.93 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.92 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.91 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.91 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.9 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.9 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.89 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.87 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.86 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.86 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.86 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.85 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.84 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.84 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.84 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.83 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.83 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.83 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.83 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.83 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.82 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.82 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.81 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.81 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.81 | |
| PRK15490 | 578 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.8 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.8 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.8 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.8 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.8 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.79 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.79 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.78 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.78 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.77 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.77 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.77 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.76 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.76 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.76 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.76 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.75 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.75 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.75 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.74 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.74 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.73 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.73 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.7 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.69 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.69 | |
| PLN02949 | 463 | transferase, transferring glycosyl groups | 99.67 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.66 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.66 | |
| TIGR03088 | 374 | stp2 sugar transferase, PEP-CTERM/EpsH1 system ass | 99.65 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.65 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.65 | |
| cd03796 | 398 | GT1_PIG-A_like This family is most closely related | 99.63 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.63 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.63 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.62 | |
| PRK15427 | 406 | colanic acid biosynthesis glycosyltransferase WcaL | 99.62 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.61 | |
| PLN02871 | 465 | UDP-sulfoquinovose:DAG sulfoquinovosyltransferase | 99.6 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.6 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.6 | |
| cd03801 | 374 | GT1_YqgM_like This family is most closely related | 99.58 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.58 | |
| cd03792 | 372 | GT1_Trehalose_phosphorylase Trehalose phosphorylas | 99.57 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.56 | |
| cd03820 | 348 | GT1_amsD_like This family is most closely related | 99.56 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.56 | |
| cd03822 | 366 | GT1_ecORF704_like This family is most closely rela | 99.56 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.56 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.55 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.55 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.52 | |
| cd03807 | 365 | GT1_WbnK_like This family is most closely related | 99.52 | |
| TIGR03449 | 405 | mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-ino | 99.52 | |
| cd05844 | 367 | GT1_like_7 Glycosyltransferases catalyze the trans | 99.51 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.51 | |
| cd03813 | 475 | GT1_like_3 This family is most closely related to | 99.5 | |
| PRK15484 | 380 | lipopolysaccharide 1,2-N-acetylglucosaminetransfer | 99.5 | |
| cd04962 | 371 | GT1_like_5 This family is most closely related to | 99.5 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.49 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.49 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.49 | |
| cd03812 | 358 | GT1_CapH_like This family is most closely related | 99.48 | |
| cd03806 | 419 | GT1_ALG11_like This family is most closely related | 99.48 | |
| cd03811 | 353 | GT1_WabH_like This family is most closely related | 99.48 | |
| cd03818 | 396 | GT1_ExpC_like This family is most closely related | 99.47 | |
| cd04951 | 360 | GT1_WbdM_like This family is most closely related | 99.47 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.47 | |
| cd03821 | 375 | GT1_Bme6_like This family is most closely related | 99.47 | |
| cd03799 | 355 | GT1_amsK_like This is a family of GT1 glycosyltran | 99.46 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.46 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.46 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.46 | |
| cd03817 | 374 | GT1_UGDG_like This family is most closely related | 99.46 | |
| PRK10307 | 412 | putative glycosyl transferase; Provisional | 99.43 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.43 | |
| cd03798 | 377 | GT1_wlbH_like This family is most closely related | 99.43 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.42 | |
| TIGR02472 | 439 | sucr_P_syn_N sucrose-phosphate synthase, putative, | 99.42 | |
| PRK09922 | 359 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D | 99.41 | |
| TIGR02918 | 500 | accessory Sec system glycosylation protein GtfA. M | 99.41 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.4 | |
| TIGR02149 | 388 | glgA_Coryne glycogen synthase, Corynebacterium fam | 99.39 | |
| cd03805 | 392 | GT1_ALG2_like This family is most closely related | 99.39 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.39 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.39 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.38 | |
| cd03795 | 357 | GT1_like_4 This family is most closely related to | 99.38 | |
| cd04949 | 372 | GT1_gtfA_like This family is most closely related | 99.38 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.37 | |
| PLN02846 | 462 | digalactosyldiacylglycerol synthase | 99.37 | |
| PLN02939 | 977 | transferase, transferring glycosyl groups | 99.36 | |
| cd03808 | 359 | GT1_cap1E_like This family is most closely related | 99.36 | |
| cd04946 | 407 | GT1_AmsK_like This family is most closely related | 99.36 | |
| TIGR03087 | 397 | stp1 sugar transferase, PEP-CTERM/EpsH1 system ass | 99.36 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.35 | |
| cd03823 | 359 | GT1_ExpE7_like This family is most closely related | 99.35 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.35 | |
| cd03809 | 365 | GT1_mtfB_like This family is most closely related | 99.34 | |
| cd03825 | 365 | GT1_wcfI_like This family is most closely related | 99.34 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.34 | |
| TIGR02470 | 784 | sucr_synth sucrose synthase. This model represents | 99.34 | |
| cd03814 | 364 | GT1_like_2 This family is most closely related to | 99.33 | |
| TIGR02468 | 1050 | sucrsPsyn_pln sucrose phosphate synthase/possible | 99.33 | |
| PLN00142 | 815 | sucrose synthase | 99.33 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.32 | |
| KOG1111 | 426 | consensus N-acetylglucosaminyltransferase complex, | 99.32 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.32 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.32 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.31 | |
| PLN02501 | 794 | digalactosyldiacylglycerol synthase | 99.31 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.31 | |
| cd03802 | 335 | GT1_AviGT4_like This family is most closely relate | 99.3 | |
| cd03819 | 355 | GT1_WavL_like This family is most closely related | 99.3 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.3 | |
| PLN02316 | 1036 | synthase/transferase | 99.3 | |
| cd04955 | 363 | GT1_like_6 This family is most closely related to | 99.3 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.3 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.27 | |
| PF00534 | 172 | Glycos_transf_1: Glycosyl transferases group 1; In | 99.27 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.27 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.27 | |
| cd03800 | 398 | GT1_Sucrose_synthase This family is most closely r | 99.26 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.26 | |
| PRK00654 | 466 | glgA glycogen synthase; Provisional | 99.25 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.25 | |
| cd03816 | 415 | GT1_ALG1_like This family is most closely related | 99.24 | |
| PRK14098 | 489 | glycogen synthase; Provisional | 99.22 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.21 | |
| PRK14099 | 485 | glycogen synthase; Provisional | 99.2 | |
| TIGR02095 | 473 | glgA glycogen/starch synthases, ADP-glucose type. | 99.19 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.19 | |
| PRK05749 | 425 | 3-deoxy-D-manno-octulosonic-acid transferase; Revi | 99.17 | |
| PHA01633 | 335 | putative glycosyl transferase group 1 | 99.15 | |
| PHA01630 | 331 | putative group 1 glycosyl transferase | 99.15 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.14 | |
| cd03794 | 394 | GT1_wbuB_like This family is most closely related | 99.14 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.12 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.11 | |
| cd03804 | 351 | GT1_wbaZ_like This family is most closely related | 99.11 | |
| PLN02605 | 382 | monogalactosyldiacylglycerol synthase | 99.1 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.08 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.08 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.06 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.05 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.05 | |
| PRK13609 | 380 | diacylglycerol glucosyltransferase; Provisional | 99.05 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.05 | |
| PRK10125 | 405 | putative glycosyl transferase; Provisional | 99.05 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.05 | |
| cd03791 | 476 | GT1_Glycogen_synthase_DULL1_like This family is mo | 99.02 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 99.02 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.01 | |
| PRK13608 | 391 | diacylglycerol glucosyltransferase; Provisional | 99.01 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.0 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.99 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.97 | |
| cd03788 | 460 | GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a | 98.97 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.97 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.96 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.96 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.96 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.96 | |
| TIGR02400 | 456 | trehalose_OtsA alpha,alpha-trehalose-phosphate syn | 98.93 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.92 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.92 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.91 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.91 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.9 | |
| PRK00726 | 357 | murG undecaprenyldiphospho-muramoylpentapeptide be | 98.9 | |
| PF13692 | 135 | Glyco_trans_1_4: Glycosyl transferases group 1; PD | 98.89 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.89 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.89 | |
| TIGR00236 | 365 | wecB UDP-N-acetylglucosamine 2-epimerase. Epimeras | 98.88 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.87 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.87 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.87 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.86 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.85 | |
| cd03785 | 350 | GT1_MurG MurG is an N-acetylglucosaminyltransferas | 98.84 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.83 | |
| PLN02275 | 371 | transferase, transferring glycosyl groups | 98.82 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.82 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.8 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.8 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.79 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.79 | |
| cd03786 | 363 | GT1_UDP-GlcNAc_2-Epimerase Bacterial members of th | 98.78 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.78 | |
| PRK00025 | 380 | lpxB lipid-A-disaccharide synthase; Reviewed | 98.78 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.77 | |
| PRK14501 | 726 | putative bifunctional trehalose-6-phosphate syntha | 98.77 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.76 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.75 | |
| TIGR01133 | 348 | murG undecaprenyldiphospho-muramoylpentapeptide be | 98.75 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.75 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.74 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.74 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.73 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.73 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.73 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.73 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.72 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.69 | |
| PLN03063 | 797 | alpha,alpha-trehalose-phosphate synthase (UDP-form | 98.69 | |
| cd04950 | 373 | GT1_like_1 Glycosyltransferases catalyze the trans | 98.68 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.67 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.67 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.66 | |
| TIGR00215 | 385 | lpxB lipid-A-disaccharide synthase. Lipid-A precur | 98.65 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.63 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.63 | |
| cd01635 | 229 | Glycosyltransferase_GTB_type Glycosyltransferases | 98.62 | |
| KOG1387 | 465 | consensus Glycosyltransferase [Cell wall/membrane/ | 98.6 | |
| TIGR03713 | 519 | acc_sec_asp1 accessory Sec system protein Asp1. Th | 98.6 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.55 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.53 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.52 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.52 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.47 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.47 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.46 | |
| KOG0853 | 495 | consensus Glycosyltransferase [Cell wall/membrane/ | 98.45 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.45 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.45 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.44 | |
| COG0438 | 381 | RfaG Glycosyltransferase [Cell envelope biogenesis | 98.42 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.42 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.41 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.41 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.4 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.4 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.4 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.39 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.39 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.36 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.35 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.29 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.29 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.27 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.27 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 98.26 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.25 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.24 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.23 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.23 | |
| TIGR02398 | 487 | gluc_glyc_Psyn glucosylglycerol-phosphate synthase | 98.17 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.16 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.16 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 98.15 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 98.14 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.11 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.11 | |
| TIGR02919 | 438 | accessory Sec system glycosyltransferase GtfB. Mem | 98.08 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.08 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.05 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.05 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.05 | |
| cd03793 | 590 | GT1_Glycogen_synthase_GSY2_like Glycogen synthase, | 98.04 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.03 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.03 | |
| TIGR01426 | 392 | MGT glycosyltransferase, MGT family. This model de | 98.02 | |
| TIGR03492 | 396 | conserved hypothetical protein. This protein famil | 98.02 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.96 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.95 | |
| PF13524 | 92 | Glyco_trans_1_2: Glycosyl transferases group 1 | 97.93 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.9 | |
| COG0707 | 357 | MurG UDP-N-acetylglucosamine:LPS N-acetylglucosami | 97.88 | |
| PLN02670 | 472 | transferase, transferring glycosyl groups | 97.88 | |
| COG1819 | 406 | Glycosyl transferases, related to UDP-glucuronosyl | 97.88 | |
| PLN03064 | 934 | alpha,alpha-trehalose-phosphate synthase (UDP-form | 97.84 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.84 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.84 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.83 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.83 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.82 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.81 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.8 | |
| PLN02410 | 451 | UDP-glucoronosyl/UDP-glucosyl transferase family p | 97.75 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.74 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.72 | |
| PHA03392 | 507 | egt ecdysteroid UDP-glucosyltransferase; Provision | 97.71 | |
| PLN03004 | 451 | UDP-glycosyltransferase | 97.71 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.69 | |
| PLN02992 | 481 | coniferyl-alcohol glucosyltransferase | 97.69 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 97.68 | |
| PLN02863 | 477 | UDP-glucoronosyl/UDP-glucosyl transferase family p | 97.67 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.66 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.65 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.62 | |
| PLN02764 | 453 | glycosyltransferase family protein | 97.61 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.61 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.6 | |
| PLN03007 | 482 | UDP-glucosyltransferase family protein | 97.6 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.6 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.6 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.6 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.57 | |
| PLN02210 | 456 | UDP-glucosyl transferase | 97.57 | |
| cd03784 | 401 | GT1_Gtf_like This family includes the Gtfs, a grou | 97.56 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.54 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.54 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.53 | |
| COG0297 | 487 | GlgA Glycogen synthase [Carbohydrate transport and | 97.53 | |
| PLN02167 | 475 | UDP-glycosyltransferase family protein | 97.52 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.51 | |
| PLN02554 | 481 | UDP-glycosyltransferase family protein | 97.49 | |
| PF00201 | 500 | UDPGT: UDP-glucoronosyl and UDP-glucosyl transfera | 97.49 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.48 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.47 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.46 | |
| PLN02208 | 442 | glycosyltransferase family protein | 97.44 | |
| PLN02207 | 468 | UDP-glycosyltransferase | 97.44 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.42 | |
| PLN02448 | 459 | UDP-glycosyltransferase family protein | 97.42 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.42 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.39 | |
| PRK09814 | 333 | beta-1,6-galactofuranosyltransferase; Provisional | 97.39 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.38 | |
| PLN02562 | 448 | UDP-glycosyltransferase | 97.38 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 97.38 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.36 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.34 | |
| PLN00414 | 446 | glycosyltransferase family protein | 97.34 | |
| PLN00164 | 480 | glucosyltransferase; Provisional | 97.33 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.33 | |
| PF13528 | 318 | Glyco_trans_1_3: Glycosyl transferase family 1 | 97.31 | |
| PLN02173 | 449 | UDP-glucosyl transferase family protein | 97.31 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.3 | |
| PLN03015 | 470 | UDP-glucosyl transferase | 97.3 | |
| PRK12446 | 352 | undecaprenyldiphospho-muramoylpentapeptide beta-N- | 97.29 | |
| PLN02152 | 455 | indole-3-acetate beta-glucosyltransferase | 97.28 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 97.27 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.27 | |
| TIGR03590 | 279 | PseG pseudaminic acid biosynthesis-associated prot | 97.24 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.23 | |
| PLN02555 | 480 | limonoid glucosyltransferase | 97.23 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.2 | |
| PLN02534 | 491 | UDP-glycosyltransferase | 97.19 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.17 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.17 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.13 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.07 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.05 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.98 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 96.93 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 96.91 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.91 | |
| PF02350 | 346 | Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; | 96.91 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.9 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.87 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.84 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 96.82 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.77 | |
| TIGR00661 | 321 | MJ1255 conserved hypothetical protein. This model | 96.74 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.7 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.68 | |
| PRK02797 | 322 | 4-alpha-L-fucosyltransferase; Provisional | 96.58 | |
| PF02684 | 373 | LpxB: Lipid-A-disaccharide synthetase; InterPro: I | 96.55 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.55 | |
| TIGR02094 | 601 | more_P_ylases alpha-glucan phosphorylases. This fa | 96.53 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.5 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.46 | |
| KOG2941 | 444 | consensus Beta-1,4-mannosyltransferase [Posttransl | 96.41 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.4 | |
| COG1519 | 419 | KdtA 3-deoxy-D-manno-octulosonic-acid transferase | 96.4 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 96.39 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 96.36 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 96.36 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.33 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.3 | |
| PF06258 | 311 | Mito_fiss_Elm1: Mitochondrial fission ELM1; InterP | 96.29 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.28 | |
| TIGR03568 | 365 | NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, | 96.24 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.16 | |
| cd04299 | 778 | GT1_Glycogen_Phosphorylase_like This family is mos | 96.12 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 96.02 | |
| KOG1192 | 496 | consensus UDP-glucuronosyl and UDP-glucosyl transf | 95.96 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.86 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.85 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 95.83 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.78 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 95.76 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 95.66 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 95.55 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.52 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 95.48 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.4 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 95.33 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 95.26 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 95.23 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 95.2 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.19 | |
| cd03789 | 279 | GT1_LPS_heptosyltransferase Lipopolysaccharide hep | 95.17 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 95.16 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 95.09 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 95.07 | |
| PF05693 | 633 | Glycogen_syn: Glycogen synthase; InterPro: IPR0086 | 95.06 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 94.99 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 94.95 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 94.9 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 94.88 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 94.85 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 94.82 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.8 | |
| PF04101 | 167 | Glyco_tran_28_C: Glycosyltransferase family 28 C-t | 94.73 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 94.68 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.65 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 94.64 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 94.6 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.55 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 94.44 | |
| COG4370 | 412 | Uncharacterized protein conserved in bacteria [Fun | 94.44 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 94.36 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 94.36 | |
| TIGR02201 | 344 | heptsyl_trn_III lipopolysaccharide heptosyltransfe | 94.2 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 94.18 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 94.17 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 94.17 | |
| PF01075 | 247 | Glyco_transf_9: Glycosyltransferase family 9 (hept | 94.11 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 94.08 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 94.05 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 93.97 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 93.89 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 93.75 | |
| PRK14089 | 347 | ipid-A-disaccharide synthase; Provisional | 93.69 | |
| PF05159 | 269 | Capsule_synth: Capsule polysaccharide biosynthesis | 93.69 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 93.61 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.57 | |
| COG0763 | 381 | LpxB Lipid A disaccharide synthetase [Cell envelop | 93.55 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 93.54 | |
| PF04007 | 335 | DUF354: Protein of unknown function (DUF354); Inte | 93.49 | |
| COG4671 | 400 | Predicted glycosyl transferase [General function p | 93.38 | |
| PRK10017 | 426 | colanic acid biosynthesis protein; Provisional | 93.31 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 93.31 | |
| PF00982 | 474 | Glyco_transf_20: Glycosyltransferase family 20; In | 93.29 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 93.19 | |
| PRK10117 | 474 | trehalose-6-phosphate synthase; Provisional | 93.13 | |
| PRK10916 | 348 | ADP-heptose:LPS heptosyltransferase II; Provisiona | 93.09 | |
| PF07429 | 360 | Glyco_transf_56: 4-alpha-L-fucosyltransferase glyc | 93.06 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.99 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 92.8 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 92.74 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 92.7 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 92.65 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 92.44 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 92.24 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 92.24 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.24 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 92.23 | |
| PRK01021 | 608 | lpxB lipid-A-disaccharide synthase; Reviewed | 92.22 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 92.18 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.14 | |
| COG0381 | 383 | WecB UDP-N-acetylglucosamine 2-epimerase [Cell env | 92.12 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 91.99 |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-146 Score=1139.94 Aligned_cols=714 Identities=41% Similarity=0.618 Sum_probs=676.6
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|..+|.++++..|..+-+ |.++|-.+..+|+...|+..|+++++++|+..++|++||.+|.+.+.|++|+.+|
T Consensus 203 a~~cYlkAi~~qp~fAia-------wsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y 275 (966)
T KOG4626|consen 203 AKACYLKAIETQPCFAIA-------WSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCY 275 (966)
T ss_pred hHHHHHHHHhhCCceeee-------ehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHH
Confidence 345566666666644333 6677888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH
Q 003891 82 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 161 (788)
Q Consensus 82 ~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~ 161 (788)
.+++.+.|+++.++.++|.+|+++|+.+-|+..|++++++.|+.++++.+++.++..+ |+..+|..+|.+++.
T Consensus 276 ~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~-------G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 276 LRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDK-------GSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhc-------cchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888887777775 599999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 003891 162 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 241 (788)
Q Consensus 162 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 241 (788)
+.|+.+++.+++|.+|.++|++++|..+|+++++..|+...++.++|.+|.++|++++|+.+|++++.+.|..++++.++
T Consensus 349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~Nm 428 (966)
T KOG4626|consen 349 LCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNM 428 (966)
T ss_pred hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCc
Q 003891 242 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD 321 (788)
Q Consensus 242 a~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~ 321 (788)
|..|..+|+.+.|+++|.+|+..+|..++++.+||.+|...|+..+|++.|+.++++.|+.+++..|++.++.++..|.+
T Consensus 429 Gnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred chHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred -----hHHHHHHHHHHHH--Hhhh----------------------------------ccCCCCCCCCCCCCCCeeEeec
Q 003891 322 -----DKLFEAHRDWGKR--FMRL----------------------------------YSQYTSWDNTKDPERPLVIGYV 360 (788)
Q Consensus 322 -----~~~~~~~~~~~~~--~~~~----------------------------------~~~~~~~~~~~~~~~~lriGyv 360 (788)
.++++.+++|.+. +... .+++..|.+-+.+++|||||||
T Consensus 509 ~d~~~~kl~sivrdql~~~rlpsvhP~hsm~ypl~~~~~~aia~k~a~~c~~~~~~~~k~pyth~~~l~~~~~rlrIGYv 588 (966)
T KOG4626|consen 509 YDKRMKKLVSIVRDQLEKNRLPSVHPHHSMLYPLSHILRKAIAAKHANLCLDKVHVLGKPPYTHPDNLKVKEGRLRIGYV 588 (966)
T ss_pred hHHHHHHHHHHHHHHHhhhcCCccCcccccccccchHHHHHHHHHHhhhhHHHHHhccCCCCCChhhCCCCcCceEEEee
Confidence 7888888988843 2221 1356778888888999999999
Q ss_pred cCCcccChhHHhhhhhhcccCCCceEEEEEeccccCChhhHHHHHHHhhhCCeEEEccCCCHHHHHHHHHhCCCcEEEeC
Q 003891 361 SPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVEL 440 (788)
Q Consensus 361 S~df~~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~~~~~~~~~~~~~~~~~~~~~a~~i~~d~idilvdl 440 (788)
|+||++||+++||+.++.+|||+++|||||+.++.++ | .||.++.+.+++|.|+++++...+|..|++|+|||||.|
T Consensus 589 SsDFgnHp~Shlmqsv~gmHdr~kveVfcYals~~d~--t-~fR~kv~~e~ehf~Dls~i~~~kiA~~I~qD~I~ILvnl 665 (966)
T KOG4626|consen 589 SSDFGNHPTSHLMQSVPGMHDRSKVEVFCYALSVNDG--T-NFRDKVMKEAEHFVDLSQIPCNKIADKIRQDKIHILVNL 665 (966)
T ss_pred cccccCCchHHHhccCcCcCCccceEEEEEEeecCCC--c-hHHHHHHhhccceeehhcCChHHHHHHHhhcCceEEEec
Confidence 9999999999999999999999999999999988654 3 389999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccccCCCCeEEecccCCCCCCCCCccEEEecCCCCCcCccCCCccceEEcCCCccccCCCC--------C
Q 003891 441 TGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSP--------E 512 (788)
Q Consensus 441 ~g~t~~~~~~~~a~r~Apvq~~~~g~~~ttg~~~~Dy~i~d~~~~p~~~~~~~~e~l~~lp~~~~~~~~~~--------~ 512 (788)
.|||.|+|.++||+|||||||+|+|||+|||.++|||+|||.+++|++....|||||++||+||+|+++.+ .
T Consensus 666 nGyTkgarneifAlrPAPIQv~wlGyPgTtGa~~mDYiITDs~tsPl~~a~~ysEkLv~lPh~ffi~d~~qk~~~~~dpn 745 (966)
T KOG4626|consen 666 NGYTKGARNEIFALRPAPIQVMWLGYPGTTGATFMDYIITDSVTSPLELAQQYSEKLVYLPHCFFIGDHKQKNQDVLDPN 745 (966)
T ss_pred cccccccccceeeccCCceeEEeecCCCCCCCceeeEEeecccCChHHHHHHHHHHHhhCCceEEecCcccccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876 6
Q ss_pred CCCCCCCCCCCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcC
Q 003891 513 AGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLP 592 (788)
Q Consensus 513 ~~~~~~~~~~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~ 592 (788)
..|+++.++||+|+|||||||+++||+|.++++|++||++||||+||++..|+.++ ++++..++++|++++||+|.+
T Consensus 746 ~kP~r~~y~Lp~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge---~rf~ty~~~~Gl~p~riifs~ 822 (966)
T KOG4626|consen 746 NKPTRSQYGLPEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE---QRFRTYAEQLGLEPDRIIFSP 822 (966)
T ss_pred CCCCCCCCCCCCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch---HHHHHHHHHhCCCccceeecc
Confidence 66889999999999999999999999999999999999999999999999998665 799999999999999999999
Q ss_pred CcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHH
Q 003891 593 LILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQL 672 (788)
Q Consensus 593 ~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l 672 (788)
... .+||+.++..+||+|||++++|+||++|.||+|||+|||+|+++++||++|+|..+|++++|+.+.+||+++||+|
T Consensus 823 va~-k~eHvrr~~LaDv~LDTplcnGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak~~eEY~~iaV~L 901 (966)
T KOG4626|consen 823 VAA-KEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAKNREEYVQIAVRL 901 (966)
T ss_pred ccc-hHHHHHhhhhhhhcccCcCcCCcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhhhHHHHHHHHHHh
Confidence 887 6999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhcccc
Q 003891 673 ASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSLKRMEMLQQQVVS 736 (788)
Q Consensus 673 ~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 736 (788)
++|.+.++.+|.++|..+..||+||..+|+..||++|.+||.+||.|++|..+||+.+|++..+
T Consensus 902 atd~~~L~~lr~~l~~~r~~splfd~~q~~~~LE~~y~~MW~~y~~G~~p~h~~me~~~e~~hd 965 (966)
T KOG4626|consen 902 ATDKEYLKKLRAKLRKARASSPLFDTKQYAKGLERLYLQMWKKYCSGEVPDHRRMENLQEEPHD 965 (966)
T ss_pred hcCHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHHHhccCCCCchHHHhccccCcCC
Confidence 9999999999999999999999999999999999999999999999999999999999998765
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-102 Score=815.72 Aligned_cols=550 Identities=30% Similarity=0.482 Sum_probs=463.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 148 DINQGVAYYKKALYYNWHYADAMYN--LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 225 (788)
Q Consensus 148 ~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 225 (788)
.-.-++..+...+.+++.++..+.. +...+...+....+......++..+|.+..+..+++......|....+...+.
T Consensus 46 ~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~ 125 (620)
T COG3914 46 LQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADIS 125 (620)
T ss_pred chhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3333666666666777777776433 46677778888888888999999999999999999988888777666665555
Q ss_pred H-HHhhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 226 M-ALSIKPNFSQSLNNL------GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 226 ~-al~~~p~~~~~~~~l------a~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
+ +....|++.+....+ +......|+..++...++++..+.|.++.....+.....++-.+. ..
T Consensus 126 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~----------~~ 195 (620)
T COG3914 126 EIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWP----------EE 195 (620)
T ss_pred HHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccch----------hc
Confidence 5 778888887755544 888888899999999999999999998776665555533333322 33
Q ss_pred CCCChhhHHhHHHHh-----hhccCCCchHHHHHHHHHHHHHhhh---ccCCCCCC-CCCCCCCCeeEeeccCCcccChh
Q 003891 299 DPDSRNAGQNRLLAM-----NYINEGHDDKLFEAHRDWGKRFMRL---YSQYTSWD-NTKDPERPLVIGYVSPDYFTHSV 369 (788)
Q Consensus 299 ~p~~~~a~~~~lla~-----~~l~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~lriGyvS~df~~H~v 369 (788)
.|.+........+.. .|+.. +...-+....+..+.+... ..+++.|. +.+.+++|+||||+|+|++.|+|
T Consensus 196 ~~tnl~~~~~~~~~~~~~~~~~~~d-~p~~~l~~~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~rlRvGylS~dlr~Hav 274 (620)
T COG3914 196 APTNLLSQLALFLGIYGFSLAYLAD-DPLKNLAIANQLLKILSQNAPELVRFPIRDENIKRNGKRLRVGYLSSDLRSHAV 274 (620)
T ss_pred cchHHHHHHHHHhhccccchhhhcc-chhhhHHHHHHHHHHhcccCCCccccccchhhccccccceeEEEeccccccchH
Confidence 344433333322221 22221 1233333444444444422 23455555 23456899999999999999999
Q ss_pred HHhhhhhhcccCCCceEEEEEecc-ccCChhhHHHHHHHhhhCCeEEEccCCCHHHHHHHHHhCCCcEEEeCCCCCCCCc
Q 003891 370 SYFIEAPLVYHDYQNYKVVVYSAV-VKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNK 448 (788)
Q Consensus 370 ~~~~~~~l~~~dr~~fev~~Y~~~-~~~D~~t~~~r~~~~~~~~~~~~~~~~~~~~~a~~i~~d~idilvdl~g~t~~~~ 448 (788)
+|++.+++++|||++|||++|+++ ++.|+.+.|++..+ .+|.++.+|++.++|++|+.|+||||||++|||..+|
T Consensus 275 g~l~~~v~e~hDRdkfEvfay~~g~~~~dal~~rI~a~~----~~~~~~~~~dd~e~a~~I~~d~IdILvDl~g~T~d~r 350 (620)
T COG3914 275 GFLLRWVFEYHDRDKFEVFAYSLGPPHTDALQERISAAV----EKWYPIGRMDDAEIANAIRTDGIDILVDLDGHTVDTR 350 (620)
T ss_pred HHHHHHHHHHhchhheEEEEEecCCCCchhHHHHHHHhh----hheeccCCcCHHHHHHHHHhcCCeEEEeccCceeccc
Confidence 999999999999999999999998 66788888888876 5799999999999999999999999999999999999
Q ss_pred ccccccCCCCeEEecccCCCCCCCCCccEEEecCCCCCcCccCCCccceEEcCCCccccCCCCCCCCC-----CCCCCCC
Q 003891 449 LGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPV-----CPTPALT 523 (788)
Q Consensus 449 ~~~~a~r~Apvq~~~~g~~~ttg~~~~Dy~i~d~~~~p~~~~~~~~e~l~~lp~~~~~~~~~~~~~~~-----~~~~~~~ 523 (788)
..|||+|||||||+|+|||+|||+|.|||||+|+++.||+++.+|||||+|||. ||.|.....++ +..+|||
T Consensus 351 ~~v~A~RpAPiqvswlGy~aT~g~p~~DY~I~D~y~vPp~ae~yysEkl~RLp~---cy~p~d~~~~v~p~~sR~~lglp 427 (620)
T COG3914 351 CQVFAHRPAPIQVSWLGYPATTGSPNMDYFISDPYTVPPTAEEYYSEKLWRLPQ---CYQPVDGFEPVTPPPSRAQLGLP 427 (620)
T ss_pred hhhhhcCCCceEEeecccccccCCCcceEEeeCceecCchHHHHHHHHHHhccc---ccCCCCCcccCCCCcchhhcCCC
Confidence 999999999999999999999999999999999999999999999999999994 66665543333 4458999
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 603 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 603 (788)
+++|||||||+.+|++|+++++|++||+++|+|+|||+++| ..+.+.++|+..+++.||+.+|++|+|..+ .++|++.
T Consensus 428 ~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~-~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~-~~~h~a~ 505 (620)
T COG3914 428 EDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGG-DDAEINARLRDLAEREGVDSERLRFLPPAP-NEDHRAR 505 (620)
T ss_pred CCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCC-CcHHHHHHHHHHHHHcCCChhheeecCCCC-CHHHHHh
Confidence 99999999999999999999999999999999999999887 677899999999999999999999999998 6799999
Q ss_pred cccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHHHHHH
Q 003891 604 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLR 683 (788)
Q Consensus 604 ~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r 683 (788)
|..+||+|||+||+||||++|||||||||||+.|++|+||+|+||++++|++|+||.|+++||++||++++|...+++.|
T Consensus 506 ~~iADlvLDTyPY~g~TTa~daLwm~vPVlT~~G~~FasR~~~si~~~agi~e~vA~s~~dYV~~av~~g~dral~q~~r 585 (620)
T COG3914 506 YGIADLVLDTYPYGGHTTASDALWMGVPVLTRVGEQFASRNGASIATNAGIPELVADSRADYVEKAVAFGSDRALRQQVR 585 (620)
T ss_pred hchhheeeecccCCCccchHHHHHhcCceeeeccHHHHHhhhHHHHHhcCCchhhcCCHHHHHHHHHHhcccHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHh
Q 003891 684 MSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYC 717 (788)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 717 (788)
..++..+.++||||++.|++.||.+|.+||.++.
T Consensus 586 ~~l~~~r~tspL~d~~~far~le~~y~~M~~~y~ 619 (620)
T COG3914 586 AELKRSRQTSPLFDPKAFARKLETLYWGMWSEYI 619 (620)
T ss_pred HHHHhccccCcccCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999874
|
|
| >PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-95 Score=775.40 Aligned_cols=351 Identities=45% Similarity=0.753 Sum_probs=284.6
Q ss_pred eeEeeccCCcccChhHHhhhhhhcccCCCceEEEEEeccccCC-hhhHHHHHHHhhhCCeEEEccCCC-HHHHHHHHHhC
Q 003891 355 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKAD-AKTIRFREKVMKKGGIWRDIYGID-EKKVAAMVRED 432 (788)
Q Consensus 355 lriGyvS~df~~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D-~~t~~~r~~~~~~~~~~~~~~~~~-~~~~a~~i~~d 432 (788)
|||||||+||++||+++|+.+++++|||++|||+||+.++.++ ..+++++. .+++|+++.+++ +.++|++|++|
T Consensus 1 LRIGyvS~Df~~Hpv~~l~~~ll~~hDr~rfev~~Ys~~~~d~~~~~~~~~~----~~~~~~dl~~~~~~~~~A~~Ir~D 76 (468)
T PF13844_consen 1 LRIGYVSSDFRNHPVGHLLQPLLENHDRSRFEVFCYSLGPDDGDTFRQRIRA----EADHFVDLSGLSDDAEAAQRIRAD 76 (468)
T ss_dssp EEEEEEES-SSSSHHHHHHHHHHHHHHHHTEEEEEEESS---SCHHHHHHHH----HSEEEEEEEE-TTSHHHHHHHHHT
T ss_pred CEEEEECCcchhCHHHHHHHHHHHhcCcccEEEEEEECCCCCCcHHHHHHHH----hCCeEEECccCCcHHHHHHHHHHC
Confidence 7999999999999999999999999999999999999987533 34555544 458999999986 68999999999
Q ss_pred CCcEEEeCCCCCCCCcccccccCCCCeEEecccCCCCCCCCCccEEEecCCCCCcCccCCCccceEEcCCCccccCCC--
Q 003891 433 KIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPS-- 510 (788)
Q Consensus 433 ~idilvdl~g~t~~~~~~~~a~r~Apvq~~~~g~~~ttg~~~~Dy~i~d~~~~p~~~~~~~~e~l~~lp~~~~~~~~~-- 510 (788)
+|||||||+|||.++|+.|||+|||||||+|||||+|||+++|||+|+|++++|++.+.+|+|||+|||++|+|+++.
T Consensus 77 ~IDILVDL~GhT~~~R~~ifA~RpAPVQvswlGyp~TtG~~~mDY~ItD~~~~P~~~~~~ysEkLirLP~sy~~~d~~~~ 156 (468)
T PF13844_consen 77 GIDILVDLSGHTAGNRLEIFALRPAPVQVSWLGYPGTTGLPAMDYIITDPVTDPPEAEEHYSEKLIRLPHSYFCNDHRQM 156 (468)
T ss_dssp T-SEEEESSTSSTSSSHHHHHT-SSSEEEEESSSSS---STT--EEEEETTTS-GGGGGG-SSEEEEESS-S----HHHH
T ss_pred CCCEEEeCCCcCCCCHhHHHhcCCcceEEEecCCCcccCCcccCEEEECCCcCCcccccCCccceEEccCceEECChHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999985110
Q ss_pred --------------------------------------------------------------------------------
Q 003891 511 -------------------------------------------------------------------------------- 510 (788)
Q Consensus 511 -------------------------------------------------------------------------------- 510 (788)
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (468)
T PF13844_consen 157 FPHLKERIVLEEKDDSRVVDNVAVINATDLSPLLEKTEVKDTVRENIVLSGDGKDATSTEVELPVLEQPTTTPIEQMIAS 236 (468)
T ss_dssp -GGGSS-EEEE--------SSSEEEE-TTHHHHHHTSST-EEEEE---------------EEEEEEESSHHHHHHHHHHH
T ss_pred hhhhhhceEeccccCCcccchhhhhhhhcCchhhhhcchHHHHHHHHhhcCCchhcccceEecccccCccHHHHHHHHHc
Confidence
Q ss_pred ----------------------------CCCC-----CCCCCCCCCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcE
Q 003891 511 ----------------------------PEAG-----PVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSR 557 (788)
Q Consensus 511 ----------------------------~~~~-----~~~~~~~~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~ 557 (788)
.+.| +.+...+||+++|||||||+++||+|+++++|++||+++|+|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~R~~~gLp~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~ 316 (468)
T PF13844_consen 237 GQVQTSVNGVVVQNGLATTQTNNKAATGEEVPQNIVVTTRAQYGLPEDAVVFGSFNNLFKISPETLDLWARILKAVPNSR 316 (468)
T ss_dssp T-SEEEETTEEEEECCGHHHH-HHHHTTSS--SSEEEEETGGGT--SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEE
T ss_pred CCeeEeECCEEeecccchhhhhccccCCccCCccccccCHHHcCCCCCceEEEecCccccCCHHHHHHHHHHHHhCCCcE
Confidence 0001 1123457899999999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCC
Q 003891 558 LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 637 (788)
Q Consensus 558 l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g 637 (788)
|||+..+. ..+++++++++++||+++||+|.+..+ .++|+..|+.+||+|||||||||||++|||||||||||++|
T Consensus 317 L~L~~~~~---~~~~~l~~~~~~~Gv~~~Ri~f~~~~~-~~ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G 392 (468)
T PF13844_consen 317 LWLLRFPA---SGEARLRRRFAAHGVDPDRIIFSPVAP-REEHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPG 392 (468)
T ss_dssp EEEEETST---THHHHHHHHHHHTTS-GGGEEEEE----HHHHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---
T ss_pred EEEeeCCH---HHHHHHHHHHHHcCCChhhEEEcCCCC-HHHHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccC
Confidence 99987653 345789999999999999999999876 79999999999999999999999999999999999999999
Q ss_pred CccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 003891 638 SVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 713 (788)
Q Consensus 638 ~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 713 (788)
+.++||+|+|+|+++|++||||.|+++|+++|++|++|++.|+++|+++|+++.+|||||.++|+++||++|++||
T Consensus 393 ~~~~sR~~aSiL~~lGl~ElIA~s~~eYv~~Av~La~D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~mW 468 (468)
T PF13844_consen 393 ETMASRVGASILRALGLPELIADSEEEYVEIAVRLATDPERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQMW 468 (468)
T ss_dssp SSGGGSHHHHHHHHHT-GGGB-SSHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHcCCchhcCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=322.78 Aligned_cols=320 Identities=31% Similarity=0.513 Sum_probs=294.2
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHH---------------------------HHHHHHHcCChHHHHHHHHHHHHhC
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTD---------------------------LGTSLKLAGNTQDGIQKYYEALKID 54 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~---------------------------lg~~~~~~g~~~~A~~~~~~al~~~ 54 (788)
|+..|+.++++.|++.+++.++|.++.. +|..+...|+..+|..+|.++++.+
T Consensus 135 al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q 214 (966)
T KOG4626|consen 135 ALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ 214 (966)
T ss_pred HHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC
Confidence 6777888888888888887777666533 6777788888899999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 003891 55 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 134 (788)
Q Consensus 55 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 134 (788)
|..+-+|.+||.++..+|+...|++.|+++++++|+..++|++||.+|...+.+++|+.+|++++.+.|++. .
T Consensus 215 p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A-------~ 287 (966)
T KOG4626|consen 215 PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA-------V 287 (966)
T ss_pred CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch-------h
Confidence 988889999999999999999999999999999999999999999999999999999999999999998874 4
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 003891 135 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 214 (788)
Q Consensus 135 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 214 (788)
++.+++.+|..+|.++-|+..|++++++.|+.++++.++|.++...|+..+|..+|.+++.+.|..+++.+++|.+|.++
T Consensus 288 a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~ 367 (966)
T KOG4626|consen 288 AHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQ 367 (966)
T ss_pred hccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 56678888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 215 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 294 (788)
Q Consensus 215 g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 294 (788)
|++++|..+|+++++..|+.+.++.+||.+|.++|++++|+.+|++++.+.|..++++.++|..|..+|+...|++.|.+
T Consensus 368 ~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~r 447 (966)
T KOG4626|consen 368 GKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTR 447 (966)
T ss_pred ccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHH
Q 003891 295 CLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 330 (788)
Q Consensus 295 al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~ 330 (788)
++.++|...+++.| ++..|-..|.-.++...++.
T Consensus 448 AI~~nPt~AeAhsN--Lasi~kDsGni~~AI~sY~~ 481 (966)
T KOG4626|consen 448 AIQINPTFAEAHSN--LASIYKDSGNIPEAIQSYRT 481 (966)
T ss_pred HHhcCcHHHHHHhh--HHHHhhccCCcHHHHHHHHH
Confidence 99999999999998 57788888888888776664
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-30 Score=294.91 Aligned_cols=529 Identities=12% Similarity=0.042 Sum_probs=348.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 003891 152 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 231 (788)
Q Consensus 152 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 231 (788)
++.-........|++.+++.++|.+....|.+++|+..++.++++.|++..+..+++.++.+++++++|+..+++++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 71 ALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG 150 (694)
T ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence 33333344455788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHH
Q 003891 232 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 311 (788)
Q Consensus 232 p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~ll 311 (788)
|+++..++.+|.++.+.|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++...+-...+.+++.
T Consensus 151 p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 151 SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997776655444432
Q ss_pred HhhhccCCCchHHHHHHHHHHH---------------HHhhhccCCCCCCCCCCCCCCe-eEeeccCCcccChhHHhhhh
Q 003891 312 AMNYINEGHDDKLFEAHRDWGK---------------RFMRLYSQYTSWDNTKDPERPL-VIGYVSPDYFTHSVSYFIEA 375 (788)
Q Consensus 312 a~~~l~~g~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~l-riGyvS~df~~H~v~~~~~~ 375 (788)
-++- .+..++++.- .....+.....-.-...|.++. ||-++-..+..=-...++..
T Consensus 231 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIl~vi~sl~~GGAEr~~~~ 302 (694)
T PRK15179 231 DLNA--------DLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRRNAEYDAGPESFVGPVLMINGSLGAGGAERQFVN 302 (694)
T ss_pred HHHH--------HHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcCcccccCCCCCCcceEEEEeCCCCCCcHHHHHHH
Confidence 1111 1111111100 0000000001111123456666 77777555543233344445
Q ss_pred hhcccCCCc--------------eEEEEEeccc-c-CChhhHHHHHHHhhhCCeEEEccC--------------------
Q 003891 376 PLVYHDYQN--------------YKVVVYSAVV-K-ADAKTIRFREKVMKKGGIWRDIYG-------------------- 419 (788)
Q Consensus 376 ~l~~~dr~~--------------fev~~Y~~~~-~-~D~~t~~~r~~~~~~~~~~~~~~~-------------------- 419 (788)
+..+.++.+ .+|+|.+... . .+.....++..-.. -.+....+
T Consensus 303 La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~~Gv~--v~~l~~~~~~~~~~~~~~~~~~~~~~~~ 380 (694)
T PRK15179 303 TAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLADAGIP--VSVYSDMQAWGGCEFSSLLAPYREYLRF 380 (694)
T ss_pred HHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHHhCCCe--EEEeccCCccCcccccccchhhHHHhhh
Confidence 555555553 3566654432 1 12333333321000 00111110
Q ss_pred CC------HHHHHHHHHhCCCcEEEeCCCCCCC-CcccccccCC--CCeEE-ecccCCCCCCC-C-------------Cc
Q 003891 420 ID------EKKVAAMVREDKIDILVELTGHTAN-NKLGMMACQP--APVQV-TWIGYPNTTGL-P-------------TI 475 (788)
Q Consensus 420 ~~------~~~~a~~i~~d~idilvdl~g~t~~-~~~~~~a~r~--Apvq~-~~~g~~~ttg~-~-------------~~ 475 (788)
++ ...+.+.|++.++||+.- |+.. +.++.++.+. .|+-+ ++-|++..... . .+
T Consensus 381 lp~~~~~~~~~L~~~lk~~kpDIVH~---h~~~a~~lg~lAa~~~gvPvIv~t~h~~~~~~~~~~~~~~~~~l~~~l~~~ 457 (694)
T PRK15179 381 LPKQIIEGTTKLTDVMRSSVPSVVHI---WQDGSIFACALAALLAGVPRIVLSVRTMPPVDRPDRYRVEYDIIYSELLKM 457 (694)
T ss_pred cchhHHHHHHHHHHHHHHcCCcEEEE---eCCcHHHHHHHHHHHcCCCEEEEEeCCCccccchhHHHHHHHHHHHHHHhc
Confidence 00 156778899999999962 3221 2233444433 35433 33233221110 0 01
Q ss_pred --cEEEecCCCCCcCc---cCCCccceEEcCCCcc--ccCCCCCCCC--CCCCCCCCCCCeEEEecCCC--CcCCHHHHH
Q 003891 476 --DYRITDSLADPPET---KQKHVEELIRLPECFL--CYTPSPEAGP--VCPTPALTNGFITFGSFNNL--AKITPKVLQ 544 (788)
Q Consensus 476 --Dy~i~d~~~~p~~~---~~~~~e~l~~lp~~~~--~~~~~~~~~~--~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~ 544 (788)
+.+|+.....-... -..-.+++..+|+..- .|.|.+.... ......++++.+++|+++|+ .|..+.+++
T Consensus 458 ~~~i~Vs~S~~~~~~l~~~~g~~~~kI~VI~NGVd~~~f~~~~~~~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~ 537 (694)
T PRK15179 458 RGVALSSNSQFAAHRYADWLGVDERRIPVVYNGLAPLKSVQDDACTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWVE 537 (694)
T ss_pred CCeEEEeCcHHHHHHHHHHcCCChhHEEEECCCcCHHhcCCCchhhHHHHhhccccCCCCeEEEEEEeCCccCCHHHHHH
Confidence 12233211000000 0112357777776421 1222111100 00012245667789998876 899999999
Q ss_pred HHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHH
Q 003891 545 VWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTC 623 (788)
Q Consensus 545 ~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~ 623 (788)
+++++++..|+.+|+|+|.| +.++.+++.++++|+. ++|.|.|..+ +....|+.+||++-|+.+ +.+.+++
T Consensus 538 A~a~l~~~~p~~~LvIvG~G----~~~~~L~~l~~~lgL~-~~V~flG~~~---dv~~ll~aaDv~VlpS~~Egfp~vlL 609 (694)
T PRK15179 538 AAQRFAASHPKVRFIMVGGG----PLLESVREFAQRLGMG-ERILFTGLSR---RVGYWLTQFNAFLLLSRFEGLPNVLI 609 (694)
T ss_pred HHHHHHHHCcCeEEEEEccC----cchHHHHHHHHHcCCC-CcEEEcCCcc---hHHHHHHhcCEEEeccccccchHHHH
Confidence 99999999999999999987 5678899999999998 9999999854 566778889999999987 5599999
Q ss_pred HHhhhCCceeecCCCccCccchh-HHHhhhCCcccccC--C--HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCCh
Q 003891 624 ESLYMGVPCVTMAGSVHAHNVGV-SLLTKVGLKHLIAK--N--EDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDG 698 (788)
Q Consensus 624 eal~~GvPvvt~~g~~~~~r~~~-~~l~~~gl~~~ia~--~--~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~ 698 (788)
|||+||+|||+ +++++ .-+..-|..+++.. | .+++.+...++..+......++++.+++..+ .|+.
T Consensus 610 EAMA~G~PVVa-------t~~gG~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~~--~FS~ 680 (694)
T PRK15179 610 EAQFSGVPVVT-------TLAGGAGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMCAADPGIARKAADWASA--RFSL 680 (694)
T ss_pred HHHHcCCeEEE-------ECCCChHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhChhccHHHHHHHHHHHHH--hCCH
Confidence 99999999998 44441 11111244455543 3 3467777766666555555667777766543 4999
Q ss_pred HHHHHHHHHHHH
Q 003891 699 QNFALGLESTYR 710 (788)
Q Consensus 699 ~~~~~~~e~~~~ 710 (788)
+.+++++++.|+
T Consensus 681 ~~~~~~~~~lY~ 692 (694)
T PRK15179 681 NQMIASTVRCYQ 692 (694)
T ss_pred HHHHHHHHHHhC
Confidence 999999999995
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-27 Score=272.84 Aligned_cols=312 Identities=20% Similarity=0.207 Sum_probs=222.1
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|++.|+++++..|+ .. .+..+|.++...|++++|+..++++++++|++..+++.+|.+|..+|++++|+..|
T Consensus 146 Ai~~y~~al~~~p~-~~-------~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~ 217 (615)
T TIGR00990 146 AIKLYSKAIECKPD-PV-------YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL 217 (615)
T ss_pred HHHHHHHHHhcCCc-hH-------HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88999999999996 33 37788889999999999999999999999999999999999999999999887655
Q ss_pred HHHHHh--------------------------------------------------------------------------
Q 003891 82 EKAALE-------------------------------------------------------------------------- 87 (788)
Q Consensus 82 ~kal~~-------------------------------------------------------------------------- 87 (788)
.++...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (615)
T TIGR00990 218 TASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQL 297 (615)
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHH
Confidence 433211
Q ss_pred -----------------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 003891 88 -----------------------------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 138 (788)
Q Consensus 88 -----------------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~ 138 (788)
.|....++..+|.++..+|++++|+..|+++++++|++...+..++.
T Consensus 298 ~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~---- 373 (615)
T TIGR00990 298 GLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRAS---- 373 (615)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH----
Confidence 13334456666777777777777777777777777766544444333
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 003891 139 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 218 (788)
Q Consensus 139 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 218 (788)
++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++...+.++|.++..+|+++
T Consensus 374 ---~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~ 450 (615)
T TIGR00990 374 ---MNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIA 450 (615)
T ss_pred ---HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHH
Confidence 33345577777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH------HHHHH-HHHHcCCHHHHHHH
Q 003891 219 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY------NNLGV-LYRDAGSISLAIDA 291 (788)
Q Consensus 219 eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~------~~la~-~~~~~g~~~eA~~~ 291 (788)
+|+..|+++++..|+++.++..+|.++...|++++|++.|++++.+.|+....+ ...+. ++...|++++|++.
T Consensus 451 eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~ 530 (615)
T TIGR00990 451 SSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENL 530 (615)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 777777777777777777777777777777777777777777777766542221 22222 23335777777777
Q ss_pred HHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHH
Q 003891 292 YEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 330 (788)
Q Consensus 292 ~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~ 330 (788)
++++++++|++..++.. ++..+...|+.+++...+++
T Consensus 531 ~~kAl~l~p~~~~a~~~--la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 531 CEKALIIDPECDIAVAT--MAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHHHhcCCCcHHHHHH--HHHHHHHccCHHHHHHHHHH
Confidence 77777777766654433 45666667776666554443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-26 Score=265.75 Aligned_cols=313 Identities=12% Similarity=0.039 Sum_probs=271.9
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|+..++.++...|++.++ ++.+|......|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|
T Consensus 61 A~~l~~~~l~~~p~~~~~-------l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l 133 (656)
T PRK15174 61 GLTLLSDRVLTAKNGRDL-------LRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLA 133 (656)
T ss_pred hHHHhHHHHHhCCCchhH-------HHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 678899999999999988 5566666678999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH
Q 003891 82 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 161 (788)
Q Consensus 82 ~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~ 161 (788)
+++++.+|++..++..++.++...|++++|+..+++++...|++...+.... .+...|++++|+..++++++
T Consensus 134 ~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~--------~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 134 EQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL--------SFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH--------HHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999876554321 24457899999999999888
Q ss_pred hCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhCCCCHH
Q 003891 162 YNWH-YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK----AVECYQMALSIKPNFSQ 236 (788)
Q Consensus 162 ~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e----A~~~~~~al~~~p~~~~ 236 (788)
.+|. .......++.++...|++++|+..++++++.+|++..++.++|.++...|++++ |+..|+++++.+|++..
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~ 285 (656)
T PRK15174 206 FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVR 285 (656)
T ss_pred cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHH
Confidence 8753 344455667888899999999999999999999999999999999999999885 79999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhc
Q 003891 237 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYI 316 (788)
Q Consensus 237 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l 316 (788)
++..+|.++...|++++|+..++++++++|+++.++..+|.++...|++++|+..|+++++.+|++...... .+..+.
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~--~a~al~ 363 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY--AAAALL 363 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH--HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999987654332 355566
Q ss_pred cCCCchHHHHHHHHH
Q 003891 317 NEGHDDKLFEAHRDW 331 (788)
Q Consensus 317 ~~g~~~~~~~~~~~~ 331 (788)
..|+.+++.+.+++.
T Consensus 364 ~~G~~deA~~~l~~a 378 (656)
T PRK15174 364 QAGKTSEAESVFEHY 378 (656)
T ss_pred HCCCHHHHHHHHHHH
Confidence 778877777665543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-26 Score=267.16 Aligned_cols=281 Identities=18% Similarity=0.204 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003891 21 ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 100 (788)
Q Consensus 21 ~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~ 100 (788)
...+..+..+|..++..|+|++|+..|+++++..|+ +..+.++|.+|..+|++++|+..++++++++|++..+++.+|.
T Consensus 124 ~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~ 202 (615)
T TIGR00990 124 KKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345777899999999999999999999999999996 7789999999999999999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCcHHH------------------------------H---------------------
Q 003891 101 IYKNRGDLESAIACYERCLAVSPNFEIA------------------------------K--------------------- 129 (788)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~~~~~------------------------------~--------------------- 129 (788)
+|..+|++++|+..|..+....+..... +
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLED 282 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhc
Confidence 9999999999998776654433211100 0
Q ss_pred ---------------------------------------------HHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCC
Q 003891 130 ---------------------------------------------NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW 164 (788)
Q Consensus 130 ---------------------------------------------~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p 164 (788)
...+.++..+|.++..+|++++|+..|+++++.+|
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 362 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP 362 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 00112233344444445555555555555555555
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 003891 165 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 244 (788)
Q Consensus 165 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 244 (788)
+....+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|+++++++|++...+..+|.+
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~ 442 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVT 442 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003891 245 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302 (788)
Q Consensus 245 ~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 302 (788)
+..+|++++|+..|+++++..|+++.++..+|.++..+|++++|++.|+++++++|++
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 5555555555555555555555555555555555555555555555555555555543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-26 Score=283.59 Aligned_cols=320 Identities=17% Similarity=0.175 Sum_probs=280.1
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH--------------HHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP--------------AYYNLGVV 67 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~lg~~ 67 (788)
|+..|+++++.+|++.++ +..+|.++...|++++|+.+|+++++.+|++.. ....+|.+
T Consensus 288 A~~~l~~aL~~~P~~~~a-------~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 288 AIPELQQAVRANPKDSEA-------LGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred HHHHHHHHHHhCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 789999999999999877 677888889999999999999999999997642 22455888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH-----------
Q 003891 68 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL----------- 136 (788)
Q Consensus 68 ~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l----------- 136 (788)
+...|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++++|++..++..++.++
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~ 440 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAF 440 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987776665543
Q ss_pred ------------------------HHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003891 137 ------------------------TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 192 (788)
Q Consensus 137 ------------------------~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 192 (788)
..++..+...|++++|++.|+++++.+|+++.+++.+|.+|...|++++|+..+++
T Consensus 441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~ 520 (1157)
T PRK11447 441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRR 520 (1157)
T ss_pred HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 23566677899999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------------------------------HhhCC
Q 003891 193 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA----------------------------------------LSIKP 232 (788)
Q Consensus 193 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a----------------------------------------l~~~p 232 (788)
+++.+|+++..++.++..+...+++++|+..++++ ++..|
T Consensus 521 al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p 600 (1157)
T PRK11447 521 LAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP 600 (1157)
T ss_pred HHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 99999999998888888777777777777766542 22467
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHH
Q 003891 233 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 312 (788)
Q Consensus 233 ~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla 312 (788)
.++..+..+|.++.+.|++++|++.|+++++.+|+++.++..++.+|...|++++|++.++++++..|++..+... ++
T Consensus 601 ~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~--la 678 (1157)
T PRK11447 601 PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRR--VA 678 (1157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHH--HH
Confidence 7888889999999999999999999999999999999999999999999999999999999999999988877554 45
Q ss_pred hhhccCCCchHHHHHHHH
Q 003891 313 MNYINEGHDDKLFEAHRD 330 (788)
Q Consensus 313 ~~~l~~g~~~~~~~~~~~ 330 (788)
..+...|+.+++.+..++
T Consensus 679 ~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 679 LAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHHhCCCHHHHHHHHHH
Confidence 666778888777665543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=260.14 Aligned_cols=289 Identities=12% Similarity=0.026 Sum_probs=266.5
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|++.|+++++.+|++..+ +..+|..+...|++++|+..|+++++.+|++..++..++.++...|++++|+..+
T Consensus 95 A~~~l~~~l~~~P~~~~a-------~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~ 167 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPED-------VLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLA 167 (656)
T ss_pred HHHHHHHHHHhCCCChHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHH
Confidence 789999999999999887 6667788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH
Q 003891 82 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 161 (788)
Q Consensus 82 ~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~ 161 (788)
++++...|++...+..++ .+...|++++|+..++++++.+|...... ...++..+...|++++|+..++++++
T Consensus 168 ~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~------~~~l~~~l~~~g~~~eA~~~~~~al~ 240 (656)
T PRK15174 168 RTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQES------AGLAVDTLCAVGKYQEAIQTGESALA 240 (656)
T ss_pred HHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhH------HHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999998887765 48899999999999999999876433211 12335556678899999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHH----HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 003891 162 YNWHYADAMYNLGVAYGEMLKFDM----AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 237 (788)
Q Consensus 162 ~~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 237 (788)
.+|++..++..+|.++...|++++ |+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|+++.+
T Consensus 241 ~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a 320 (656)
T PRK15174 241 RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYV 320 (656)
T ss_pred cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999999996 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 003891 238 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304 (788)
Q Consensus 238 ~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 304 (788)
+..+|.++...|++++|+..|++++..+|++...+..+|.++...|++++|++.|+++++.+|++..
T Consensus 321 ~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~ 387 (656)
T PRK15174 321 RAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP 387 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch
Confidence 9999999999999999999999999999999888888899999999999999999999999999754
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-24 Score=266.21 Aligned_cols=299 Identities=21% Similarity=0.222 Sum_probs=250.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 107 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~ 107 (788)
..++..+...|++++|+..++++++..|.+...|..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|+
T Consensus 571 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 650 (899)
T TIGR02917 571 LALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKN 650 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence 44667777888888888888888888888888999999999999999999999999998889888889999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHH---------------------------HHhhhhhhhcCCHHHHHHHHHHHH
Q 003891 108 LESAIACYERCLAVSPNFEIAKNNMAIAL---------------------------TDLGTKVKLEGDINQGVAYYKKAL 160 (788)
Q Consensus 108 ~~~A~~~~~~al~~~p~~~~~~~~la~~l---------------------------~~lg~~~~~~g~~~~A~~~~~~al 160 (788)
+++|+..|+++++..|++...+..++.++ ..+|.++...|++++|++.|++++
T Consensus 651 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 730 (899)
T TIGR02917 651 YAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKAL 730 (899)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999998888776665554433 335566777888888888888888
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 003891 161 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN 240 (788)
Q Consensus 161 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 240 (788)
...|+. ..+..++.++...|++++|++.++++++..|++..+++.+|.++...|++++|+.+|+++++.+|+++.++..
T Consensus 731 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 809 (899)
T TIGR02917 731 KRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNN 809 (899)
T ss_pred hhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 888777 6677788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCC
Q 003891 241 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 320 (788)
Q Consensus 241 la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~ 320 (788)
++.++...|+ .+|+.+++++++..|+++..+..+|.++...|++++|+++|+++++.+|+++.+..+ ++..+...|+
T Consensus 810 l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~--l~~~~~~~g~ 886 (899)
T TIGR02917 810 LAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYH--LALALLATGR 886 (899)
T ss_pred HHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH--HHHHHHHcCC
Confidence 8888888888 788888888888888888888888888888899999999999998888887776665 4666777788
Q ss_pred chHHHHHHHH
Q 003891 321 DDKLFEAHRD 330 (788)
Q Consensus 321 ~~~~~~~~~~ 330 (788)
.+++.+..++
T Consensus 887 ~~~A~~~~~~ 896 (899)
T TIGR02917 887 KAEARKELDK 896 (899)
T ss_pred HHHHHHHHHH
Confidence 7777665543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-24 Score=267.62 Aligned_cols=323 Identities=20% Similarity=0.188 Sum_probs=277.2
Q ss_pred HHHHHHHHHHcCCCChhhH--HHH-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 003891 2 LVASYHKALSADPSYKPAA--ECL-----AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 74 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~--~~l-----a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 74 (788)
|+..|+++++.+|++.... ..+ ...+..+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++
T Consensus 322 A~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~ 401 (1157)
T PRK11447 322 AVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDY 401 (1157)
T ss_pred HHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 7899999999999876431 111 123445688999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHH------------------------------------------HHHHCCCHHHHH
Q 003891 75 DTALGCYEKAALERPMYAEAYCNMGV------------------------------------------IYKNRGDLESAI 112 (788)
Q Consensus 75 ~~A~~~~~kal~~~p~~~~~~~~la~------------------------------------------~~~~~g~~~~A~ 112 (788)
++|++.|+++++.+|++..++..++. ++...|++++|+
T Consensus 402 ~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~ 481 (1157)
T PRK11447 402 AAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAA 481 (1157)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999998776655544 445679999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003891 113 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 192 (788)
Q Consensus 113 ~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 192 (788)
+.|+++++++|++...+.. ++.++...|++++|+..++++++..|+++..++.++..+...+++++|+..+++
T Consensus 482 ~~~~~Al~~~P~~~~~~~~-------LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~ 554 (1157)
T PRK11447 482 ELQRQRLALDPGSVWLTYR-------LAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNT 554 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 9999999999998765544 455555677999999999999999999999888888887778888877776654
Q ss_pred H----------------------------------------HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003891 193 A----------------------------------------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 232 (788)
Q Consensus 193 a----------------------------------------l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 232 (788)
+ ++..|.+...+..+|.++.+.|++++|+.+|+++++.+|
T Consensus 555 l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P 634 (1157)
T PRK11447 555 LPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP 634 (1157)
T ss_pred CCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 2 224678888999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh----hHHh
Q 003891 233 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN----AGQN 308 (788)
Q Consensus 233 ~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~----a~~~ 308 (788)
+++.++..++.+|...|++++|++.++++++..|+++.++..+|.++..+|++++|++.|+++++..|+++. +...
T Consensus 635 ~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~ 714 (1157)
T PRK11447 635 GNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVL 714 (1157)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998876653 2233
Q ss_pred HHHHhhhccCCCchHHHHHHHHH
Q 003891 309 RLLAMNYINEGHDDKLFEAHRDW 331 (788)
Q Consensus 309 ~lla~~~l~~g~~~~~~~~~~~~ 331 (788)
+.++..+...|+.+++.+.+++.
T Consensus 715 ~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 715 RDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 34577778889998888877654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.3e-26 Score=242.63 Aligned_cols=274 Identities=20% Similarity=0.310 Sum_probs=234.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 103 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~ 103 (788)
+.++.++|..|+..++|++|.++|+.+-+..|-..+..-....+++.+++--+--.+.+..++.+|+.++.|..+|+||.
T Consensus 353 ~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfS 432 (638)
T KOG1126|consen 353 GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFS 432 (638)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhh
Confidence 34455555555555555555555555555555544444444444444444433333444445668889999999999999
Q ss_pred HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 003891 104 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 183 (788)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 183 (788)
-+++++.|+++|++|++++|.+. .+|..+|.-+....++++|..+|++++..+|.+..+|+.+|.+|.+++++
T Consensus 433 LQkdh~~Aik~f~RAiQldp~fa-------YayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~ 505 (638)
T KOG1126|consen 433 LQKDHDTAIKCFKRAIQLDPRFA-------YAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKL 505 (638)
T ss_pred hhhHHHHHHHHHHHhhccCCccc-------hhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchh
Confidence 99999999999999999999874 56667777778889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003891 184 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 263 (788)
Q Consensus 184 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~ 263 (788)
+.|+-.|++|++++|.+......+|.++.+.|+.++|+.+|++|+.++|.++-..+..|.++...+++++|+..+++..+
T Consensus 506 e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 506 EFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred hHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 003891 264 ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304 (788)
Q Consensus 264 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 304 (788)
+-|+...+++.+|.+|.++|+.+.|+..|.-|+.++|.-.+
T Consensus 586 ~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 586 LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99999999999999999999999999999999999998655
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-23 Score=254.72 Aligned_cols=317 Identities=23% Similarity=0.239 Sum_probs=172.1
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|++.+++.+...|++... +..+|.++...|++++|+..|+++++.+|++..+++.++.++...|++++|+..|
T Consensus 450 A~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 522 (899)
T TIGR02917 450 ALAAAKKLEKKQPDNASL-------HNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRF 522 (899)
T ss_pred HHHHHHHHHHhCCCCcHH-------HHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 455556666655655444 3444445555555556666666555555555555555555555555555555555
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH------------------------
Q 003891 82 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT------------------------ 137 (788)
Q Consensus 82 ~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~------------------------ 137 (788)
+++++..|.+..++..++.++...|++++|+..++++++.+|.+...+..++..+.
T Consensus 523 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 602 (899)
T TIGR02917 523 EKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPE 602 (899)
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH
Confidence 55555555555555555555555555555555555555555554444444433332
Q ss_pred ---HhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 003891 138 ---DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 214 (788)
Q Consensus 138 ---~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 214 (788)
.++.++...|++++|+..|+++++.+|.+..++..++.++...|++++|+..|+++++.+|++..++..++.++...
T Consensus 603 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 682 (899)
T TIGR02917 603 AWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAA 682 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 23333334445555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 215 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 294 (788)
Q Consensus 215 g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 294 (788)
|++++|+..++++.+..|.+...+..+|.++...|++++|++.|++++...|++ ..+..++.++...|++++|.+.+++
T Consensus 683 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 761 (899)
T TIGR02917 683 KRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEA 761 (899)
T ss_pred CCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555544 4445555555555555555555555
Q ss_pred HHhhCCCChhhHHhHHHHhhhccCCCchHHHHHH
Q 003891 295 CLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 328 (788)
Q Consensus 295 al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~ 328 (788)
+++.+|++..+... ++..|...|+.+++.+.+
T Consensus 762 ~l~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~ 793 (899)
T TIGR02917 762 WLKTHPNDAVLRTA--LAELYLAQKDYDKAIKHY 793 (899)
T ss_pred HHHhCCCCHHHHHH--HHHHHHHCcCHHHHHHHH
Confidence 55555555444332 344444455555444433
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-23 Score=227.39 Aligned_cols=302 Identities=18% Similarity=0.150 Sum_probs=257.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHH
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY----AEAYCNMGVI 101 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~----~~~~~~la~~ 101 (788)
..+.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. ..++..+|.+
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 356678888999999999999999999999999999999999999999999999999998854332 3578999999
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHH
Q 003891 102 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA-----DAMYNLGVA 176 (788)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~ 176 (788)
|...|++++|+..|+++++..|.+...+ ..++.++...|++++|++.++++++..|.+. ..+..+|.+
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~-------~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEGDFAEGAL-------QQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCCcchHHHH-------HHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999888765444 4455556667899999999999999887653 256788999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 003891 177 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAAA 255 (788)
Q Consensus 177 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~ 255 (788)
+...|++++|+..|+++++.+|+...++..+|.++...|++++|++.++++++.+|.+ ...+..++.+|...|++++|+
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 269 (389)
T PRK11788 190 ALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL 269 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998876 457889999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHHHHHHH
Q 003891 256 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRF 335 (788)
Q Consensus 256 ~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~~~~~~ 335 (788)
..++++++..|+... +..++.++.+.|++++|+..++++++..|++......+...+.....|...+++...+++.++.
T Consensus 270 ~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 270 EFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 999999999998754 4899999999999999999999999999997755422212221222456667776666555443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-22 Score=239.67 Aligned_cols=322 Identities=15% Similarity=0.074 Sum_probs=220.8
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|++.|+++++.+|++..+ +..++.++...|++++|+..++++++..|++.. +..+|.++...|++++|+..+
T Consensus 68 A~~~~~~al~~~P~~~~a-------~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l 139 (765)
T PRK10049 68 SLTLWQKALSLEPQNDDY-------QRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAM 139 (765)
T ss_pred HHHHHHHHHHhCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHH
Confidence 444555555555555444 223344444445555555555555555555555 555555555555555555555
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----------------------------------------
Q 003891 82 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA----------------------------------------- 120 (788)
Q Consensus 82 ~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------------------------------- 120 (788)
+++++..|++..++..++.++...++.++|++.++++..
T Consensus 140 ~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 140 TQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQY 219 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHH
Confidence 555555555555555555555544444444433332221
Q ss_pred -----hCCCcHHHHHHHHHHHHH-hhhhhhhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHH
Q 003891 121 -----VSPNFEIAKNNMAIALTD-LGTKVKLEGDINQGVAYYKKALYYNWHYA-DAMYNLGVAYGEMLKFDMAIVFYELA 193 (788)
Q Consensus 121 -----~~p~~~~~~~~la~~l~~-lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~a 193 (788)
..|.++........+... ++ .+...+++++|+..|+++++..+..+ .+...+|.+|...|++++|+..|+++
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~ 298 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTEL 298 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 100000000000000001 12 23456889999999999998865432 34455799999999999999999999
Q ss_pred HhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHcCCHHHH
Q 003891 194 FHFNPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN---------------FSQSLNNLGVVYTVQGKMDAA 254 (788)
Q Consensus 194 l~~~p~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~eA 254 (788)
++.+|.+ ......++.++.+.|++++|+..++++.+..|. ...++..++.++...|++++|
T Consensus 299 l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 299 FYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred hhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 9888765 456778888899999999999999999988762 235778899999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHHHHHH
Q 003891 255 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKR 334 (788)
Q Consensus 255 ~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~~~~~ 334 (788)
++.+++++...|++..++..+|.++...|++++|++.++++++++|++...... .++.++..++.+++....++..+.
T Consensus 379 ~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~--~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 379 EMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVE--QAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH--HHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999987665 556778888888887777666554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-22 Score=220.83 Aligned_cols=286 Identities=19% Similarity=0.144 Sum_probs=250.3
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY----APAYYNLGVVYSELMQYDTA 77 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A 77 (788)
|+..|+++++.+|++..+ +..+|..+...|++++|+..++++++..+.. ..++..+|.+|...|++++|
T Consensus 54 A~~~~~~al~~~p~~~~~-------~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 54 AIDLFIEMLKVDPETVEL-------HLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred HHHHHHHHHhcCcccHHH-------HHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 788999999999988665 6778888899999999999999998854332 35789999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHH
Q 003891 78 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 157 (788)
Q Consensus 78 ~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~ 157 (788)
+..|+++++.+|.+..++..++.++...|++++|++.++++++..|..... ..+..+..++..+...|++++|+.+|+
T Consensus 127 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 127 EELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV--EIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH--HHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988765432 234456778888888999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 003891 158 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 236 (788)
Q Consensus 158 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 236 (788)
++++.+|+...++..+|.++...|++++|++.++++++.+|.+ ..++..++.+|...|++++|+..++++++..|+...
T Consensus 205 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 284 (389)
T PRK11788 205 KALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL 284 (389)
T ss_pred HHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH
Confidence 9999999999999999999999999999999999999998876 467889999999999999999999999999998754
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHh
Q 003891 237 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD--AGSISLAIDAYEQCLK 297 (788)
Q Consensus 237 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~--~g~~~eA~~~~~~al~ 297 (788)
. ..++.++...|++++|+..++++++..|++......++..+.. .|+..+|+..+++.++
T Consensus 285 ~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 285 L-LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred H-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 4 8999999999999999999999999999987665455444432 4588888888777664
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-22 Score=207.88 Aligned_cols=282 Identities=20% Similarity=0.239 Sum_probs=254.4
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003891 20 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 99 (788)
Q Consensus 20 ~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la 99 (788)
....|..+-..|+-++.+|+|++||++|.++|++.|+.+..|.+++-||...|++++.++...++++++|++..+++..+
T Consensus 111 ~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA 190 (606)
T KOG0547|consen 111 RLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRA 190 (606)
T ss_pred HHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCHHHHHHHH------------------HHHHhh--------------CCCcHH--------------------
Q 003891 100 VIYKNRGDLESAIACY------------------ERCLAV--------------SPNFEI-------------------- 127 (788)
Q Consensus 100 ~~~~~~g~~~~A~~~~------------------~~al~~--------------~p~~~~-------------------- 127 (788)
..+..+|++++|+.-. ++.++. .|..+.
T Consensus 191 ~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~ 270 (606)
T KOG0547|consen 191 SAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFD 270 (606)
T ss_pred HHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccccc
Confidence 9999999999886532 222211 000000
Q ss_pred --------------------------------------------------HHHHHHHHHHHhhhhhhhcCCHHHHHHHHH
Q 003891 128 --------------------------------------------------AKNNMAIALTDLGTKVKLEGDINQGVAYYK 157 (788)
Q Consensus 128 --------------------------------------------------~~~~la~~l~~lg~~~~~~g~~~~A~~~~~ 157 (788)
-...++.++...|..+.-.|+...|...++
T Consensus 271 ~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~ 350 (606)
T KOG0547|consen 271 NKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFD 350 (606)
T ss_pred CCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHH
Confidence 011234455556677778899999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 003891 158 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 237 (788)
Q Consensus 158 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 237 (788)
++++++|.....|..++.+|....+.++..+.|.++..++|+++.+|+..|.+++-++++++|+.-|++++.++|++...
T Consensus 351 ~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~ 430 (606)
T KOG0547|consen 351 AAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYA 430 (606)
T ss_pred HHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 238 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 238 ~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
+..++.+.+++++++++...|+.+.+..|+.++.+...|.++..++++++|++.|.+|+++.|.
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.6e-22 Score=235.42 Aligned_cols=283 Identities=13% Similarity=0.044 Sum_probs=251.1
Q ss_pred HHHHHHHHHcCCC--ChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003891 3 VASYHKALSADPS--YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGC 80 (788)
Q Consensus 3 i~~~~kaL~~~P~--~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 80 (788)
...+.+++...|. +..+ ++.+|.++.. ++..+|+..|.+++...|++. ....+|..+...|++++|+..
T Consensus 461 ~~~~~~al~~~p~~~~~~a-------~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~ 531 (987)
T PRK09782 461 CPAIVRLLGDMSPSYDAAA-------WNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAA 531 (987)
T ss_pred HHHHHHhcccCCCCCCHHH-------HHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHH
Confidence 3455666666676 6666 6666766666 899999999999999999754 466778888899999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHH
Q 003891 81 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 160 (788)
Q Consensus 81 ~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al 160 (788)
|+++....|. ...+..+|.++...|++++|+.+|+++++..|........ ++......|++++|+..|++++
T Consensus 532 ~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~-------La~~l~~~Gr~~eAl~~~~~AL 603 (987)
T PRK09782 532 WQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWW-------LHAQRYIPGQPELALNDLTRSL 603 (987)
T ss_pred HHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHH-------HHHHHHhCCCHHHHHHHHHHHH
Confidence 9998777555 4567899999999999999999999999999887543332 3333344689999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 003891 161 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN 240 (788)
Q Consensus 161 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 240 (788)
+.+|+ ..++.++|.++.+.|++++|+..|++++..+|++..++.++|.++...|++++|+..|+++++.+|+++.++.+
T Consensus 604 ~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~n 682 (987)
T PRK09782 604 NIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQ 682 (987)
T ss_pred HhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99996 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 003891 241 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 303 (788)
Q Consensus 241 la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~ 303 (788)
+|.++...|++++|+..|++++++.|++..+....|.+.....+++.|.+.++++..++|+..
T Consensus 683 LA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 683 LAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 999999999999999999999999999999999999999999999999999999999999876
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-22 Score=206.33 Aligned_cols=313 Identities=19% Similarity=0.226 Sum_probs=267.0
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
||++|.+||++.|+.+.. |.+++-+|...|+|++.++...++++++|+...+++..+..+..+|++++|+.-.
T Consensus 134 AIkyY~~AI~l~p~epiF-------YsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~ 206 (606)
T KOG0547|consen 134 AIKYYTQAIELCPDEPIF-------YSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDV 206 (606)
T ss_pred HHHHHHHHHhcCCCCchh-------hhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhh
Confidence 899999999999998655 6667777788899999999999999999999999999999999999998887643
Q ss_pred HH------------------HHHh--------------CC----------------------------------------
Q 003891 82 EK------------------AALE--------------RP---------------------------------------- 89 (788)
Q Consensus 82 ~k------------------al~~--------------~p---------------------------------------- 89 (788)
.- .++. .|
T Consensus 207 tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~ 286 (606)
T KOG0547|consen 207 TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEA 286 (606)
T ss_pred hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHH
Confidence 31 1110 00
Q ss_pred ----------------------------CC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 003891 90 ----------------------------MY---------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 132 (788)
Q Consensus 90 ----------------------------~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 132 (788)
.+ +.++...|..++-.|++..|...|+++|.++|.+...
T Consensus 287 l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l---- 362 (606)
T KOG0547|consen 287 LEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL---- 362 (606)
T ss_pred HHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchH----
Confidence 00 2455666777788899999999999999999987644
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003891 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 212 (788)
Q Consensus 133 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 212 (788)
|..++.+|...++.++-...|.++..++|+++++|+..|++++-++++++|+.-|++++.++|++...+..++.+.+
T Consensus 363 ---yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 363 ---YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALY 439 (606)
T ss_pred ---HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHH
Confidence 55666667778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH-HcCCH
Q 003891 213 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------YAEAYNNLGVLYR-DAGSI 285 (788)
Q Consensus 213 ~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~------~~~~~~~la~~~~-~~g~~ 285 (788)
++++++++...|+.+.+..|+.++.+...|.++..++++++|++.|.+++.+.|. ++..+...|.+.. -.+++
T Consensus 440 r~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~ 519 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDI 519 (606)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhH
Confidence 9999999999999999999999999999999999999999999999999999998 5544444444332 34899
Q ss_pred HHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHH
Q 003891 286 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 330 (788)
Q Consensus 286 ~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~ 330 (788)
.+|+..++++++++|....+... ++..-+..|+.+++++..++
T Consensus 520 ~~a~~Ll~KA~e~Dpkce~A~~t--laq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 520 NQAENLLRKAIELDPKCEQAYET--LAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred HHHHHHHHHHHccCchHHHHHHH--HHHHHHHHhhHHHHHHHHHH
Confidence 99999999999999999888766 45556667777776665443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=217.78 Aligned_cols=295 Identities=21% Similarity=0.228 Sum_probs=260.8
Q ss_pred HHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003891 22 CLAIVLTDLGTSLKLA--GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 99 (788)
Q Consensus 22 ~la~~l~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la 99 (788)
.+-.++..+|..+... -+..+|+..|.+.-+..++...++.++|..|+++++|++|..+|+.+-+..|...+..-.+.
T Consensus 315 ~l~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyS 394 (638)
T KOG1126|consen 315 ELMELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYS 394 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHH
Confidence 3444566666665544 45689999999977777888899999999999999999999999999999998777777777
Q ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 100 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 179 (788)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 179 (788)
.+++...+--+--.+.+..++.+|+.++.|.. +|++|.-+++.+.|+++|+++++++|....+|..+|.-+..
T Consensus 395 T~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca-------~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~ 467 (638)
T KOG1126|consen 395 TTLWHLQDEVALSYLAQDLIDTDPNSPESWCA-------LGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIA 467 (638)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHH-------hcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhh
Confidence 77887777666566677888999999877654 55666668899999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 180 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 259 (788)
Q Consensus 180 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~ 259 (788)
..++|+|..+|++++..+|.+..+|+.+|.+|.++++++.|.-+|++|++++|.+......+|.++.+.|+.++|+.+|+
T Consensus 468 ~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~ 547 (638)
T KOG1126|consen 468 TEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYE 547 (638)
T ss_pred hHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHH
Q 003891 260 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLF 325 (788)
Q Consensus 260 kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~ 325 (788)
+|+.++|.++-..+..|.++..++++++|+..+++.-++.|++..++. +++..|-..|....++
T Consensus 548 ~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~--llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 548 KAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFA--LLGKIYKRLGNTDLAL 611 (638)
T ss_pred HHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHH--HHHHHHHHHccchHHH
Confidence 999999999999999999999999999999999999999999777654 5677776666655443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.4e-21 Score=196.90 Aligned_cols=298 Identities=24% Similarity=0.261 Sum_probs=252.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH-----------------------------HHHHcCCHHH
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGV-----------------------------VYSELMQYDT 76 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~-----------------------------~~~~~g~~~~ 76 (788)
.++..|.++.+.|....|+..|.+++...|-+-.+|..|+. ++....+.++
T Consensus 166 llYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e 245 (559)
T KOG1155|consen 166 LLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEE 245 (559)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHH
Confidence 47778999999999999999999999988887776655543 4444556677
Q ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH------------------
Q 003891 77 ALGCYEKAALE-RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT------------------ 137 (788)
Q Consensus 77 A~~~~~kal~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~------------------ 137 (788)
++.-++..... .|.+...-...|.+...+.++++|+..|+...+.+|-..+.....+.+++
T Consensus 246 ~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i 325 (559)
T KOG1155|consen 246 ALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI 325 (559)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh
Confidence 77777777776 78888888899999999999999999999999998864333222222221
Q ss_pred ---------HhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 003891 138 ---------DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 208 (788)
Q Consensus 138 ---------~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 208 (788)
-+|+.|...++.++|+.+|+++++++|....+|..+|.-|.++++...|++.|++|++++|.+..+|+.+|
T Consensus 326 dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLG 405 (559)
T KOG1155|consen 326 DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLG 405 (559)
T ss_pred ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhh
Confidence 24677888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003891 209 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 288 (788)
Q Consensus 209 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA 288 (788)
..|.-++...=|+-+|++|++..|++...|..||.||.+.++.++|+++|++++.....+..++..||++|.++++.++|
T Consensus 406 QaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 406 QAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhC-----CCChhhHHhHHHHhhhccCCCchH
Q 003891 289 IDAYEQCLKID-----PDSRNAGQNRLLAMNYINEGHDDK 323 (788)
Q Consensus 289 ~~~~~~al~l~-----p~~~~a~~~~lla~~~l~~g~~~~ 323 (788)
..+|++.++.. -++........++..+...++.++
T Consensus 486 a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~ 525 (559)
T KOG1155|consen 486 AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDE 525 (559)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHH
Confidence 99999999843 222222223345555555555444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-20 Score=225.30 Aligned_cols=320 Identities=13% Similarity=0.075 Sum_probs=263.7
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|++.|+++...+|....+ +..+|..+...|++++|+..|+++++.+|.++.++..++.++...|++++|+..+
T Consensus 34 A~~~~~~~~~~~~~~a~~-------~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l 106 (765)
T PRK10049 34 VITVYNRYRVHMQLPARG-------YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKA 106 (765)
T ss_pred HHHHHHHHHhhCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 678888888878887666 6677788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhh------------------
Q 003891 82 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV------------------ 143 (788)
Q Consensus 82 ~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~------------------ 143 (788)
+++++..|++.. +..+|.++...|++++|+..+++++++.|++...+..++.++...+...
T Consensus 107 ~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~ 185 (765)
T PRK10049 107 KQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRD 185 (765)
T ss_pred HHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHH
Confidence 999999999999 9999999999999999999999999999999988887777664322110
Q ss_pred ------------------hhcCCH---HHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003891 144 ------------------KLEGDI---NQGVAYYKKALYYNWHYAD-------AMYNLGVAYGEMLKFDMAIVFYELAFH 195 (788)
Q Consensus 144 ------------------~~~g~~---~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~ 195 (788)
...+++ ++|++.++++++..|.++. +.......+...|++++|+..|+++++
T Consensus 186 l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~ 265 (765)
T PRK10049 186 LEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKA 265 (765)
T ss_pred HHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 011223 6788888888876444332 222212344677999999999999998
Q ss_pred cCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Q 003891 196 FNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT--- 267 (788)
Q Consensus 196 ~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~--- 267 (788)
..+.. ..+...+|.+|..+|++++|+.+|+++++.+|.+ ......++.++...|++++|+..++++....|.
T Consensus 266 ~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~ 345 (765)
T PRK10049 266 EGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLR 345 (765)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEe
Confidence 86432 2344446999999999999999999999988765 456778888899999999999999999998763
Q ss_pred ------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHHH
Q 003891 268 ------------YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 331 (788)
Q Consensus 268 ------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~~ 331 (788)
...++..++.++...|++++|++.+++++...|++..++.. ++..+...|+.+++.+..++.
T Consensus 346 ~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~--lA~l~~~~g~~~~A~~~l~~a 419 (765)
T PRK10049 346 LYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRID--YASVLQARGWPRAAENELKKA 419 (765)
T ss_pred ecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHH
Confidence 24577889999999999999999999999999999877655 667777888888777665543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-21 Score=198.96 Aligned_cols=267 Identities=19% Similarity=0.223 Sum_probs=231.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 107 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~ 107 (788)
...|.+.+.+.++++|+..|++..+.+|-..+-.-...++++-.++-.+-.-+.+.+.+++.-.++....+|+.|...++
T Consensus 266 ~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~e 345 (559)
T KOG1155|consen 266 TQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSE 345 (559)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHh
Confidence 34556667777888888888888888877666666666666666665555555566667777777888888999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 003891 108 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 187 (788)
Q Consensus 108 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 187 (788)
.++|+.+|+++++++|+...+|.. +|.-|..+++...|++.|++|++++|.+-.+|+.+|++|.-++...-|+
T Consensus 346 HEKAv~YFkRALkLNp~~~~aWTL-------mGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaL 418 (559)
T KOG1155|consen 346 HEKAVMYFKRALKLNPKYLSAWTL-------MGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYAL 418 (559)
T ss_pred HHHHHHHHHHHHhcCcchhHHHHH-------hhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHH
Confidence 999999999999999998765544 5555666779999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 003891 188 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--- 264 (788)
Q Consensus 188 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~--- 264 (788)
-+|+++++..|.+...|..+|.||.+.++.++|+++|.+++.....+..++..+|.+|.+.++.++|..+|++.++.
T Consensus 419 yYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~ 498 (559)
T KOG1155|consen 419 YYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSEL 498 (559)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999983
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 265 ----NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 265 ----~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
.|+...+...|+..+.+.+++++|..+..+++.-++.
T Consensus 499 eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 499 EGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred hcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 4555677788999999999999999998888776443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.4e-21 Score=226.05 Aligned_cols=254 Identities=16% Similarity=0.105 Sum_probs=228.0
Q ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003891 43 GIQKYYEALKIDPH--YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 120 (788)
Q Consensus 43 A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 120 (788)
+...+.+++...|. ++.+|+++|.++.. +++.+|+..+.+++...|+.. ....+|.++...|++++|+..|++++.
T Consensus 460 ~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~ 537 (987)
T PRK09782 460 NCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISL 537 (987)
T ss_pred hHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 44555556666777 99999999999987 899999999999999999754 466678888899999999999999988
Q ss_pred hCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 003891 121 VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 200 (788)
Q Consensus 121 ~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 200 (788)
..|... .+ ..+|.++...|++++|+.+|+++++.+|.....+..++......|++++|+..|+++++.+|+
T Consensus 538 ~~p~~~-a~-------~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~- 608 (987)
T PRK09782 538 HDMSNE-DL-------LAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS- 608 (987)
T ss_pred cCCCcH-HH-------HHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-
Confidence 766643 22 344556666889999999999999999999888888887778889999999999999999997
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 280 (788)
Q Consensus 201 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~ 280 (788)
..++.++|.++.+.|++++|+..|+++++.+|+++.++.++|.++...|++++|++.|+++++.+|+++.+++++|.++.
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~ 688 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ 688 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChhhHH
Q 003891 281 DAGSISLAIDAYEQCLKIDPDSRNAGQ 307 (788)
Q Consensus 281 ~~g~~~eA~~~~~~al~l~p~~~~a~~ 307 (788)
.+|++++|+.+|+++++++|++.....
T Consensus 689 ~lGd~~eA~~~l~~Al~l~P~~a~i~~ 715 (987)
T PRK09782 689 RLDDMAATQHYARLVIDDIDNQALITP 715 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCchhhh
Confidence 999999999999999999998766543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-20 Score=208.12 Aligned_cols=327 Identities=21% Similarity=0.247 Sum_probs=250.1
Q ss_pred HHHHHHHHHHcCCCChhhHHHHH------------------------------HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLA------------------------------IVLTDLGTSLKLAGNTQDGIQKYYEAL 51 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la------------------------------~~l~~lg~~~~~~g~~~~A~~~~~~al 51 (788)
++..++++...+|.++.+...++ ..++.+|.++..+|+|++|..+|.+++
T Consensus 255 ~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 255 GVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL 334 (1018)
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 45566666667776666554443 336778999999999999999999999
Q ss_pred HhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHhhCCCcH
Q 003891 52 KIDPHY-APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG----DLESAIACYERCLAVSPNFE 126 (788)
Q Consensus 52 ~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~ 126 (788)
+.++++ .-.++.+|.+|+..|+++.|+.+|+++++..|++.+....||.+|...+ ..++|..+..++++..|.+.
T Consensus 335 k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~ 414 (1018)
T KOG2002|consen 335 KADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS 414 (1018)
T ss_pred ccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH
Confidence 999888 7788999999999999999999999999999999999999999998886 67889999999999999888
Q ss_pred HHHHHHHHHH-------------------------------HHhhhhhhhcCCHHHHHHHHHHHHHh-----CCCC----
Q 003891 127 IAKNNMAIAL-------------------------------TDLGTKVKLEGDINQGVAYYKKALYY-----NWHY---- 166 (788)
Q Consensus 127 ~~~~~la~~l-------------------------------~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---- 166 (788)
.+|..++.++ .++|..++..|++.+|...|.+++.. +++.
T Consensus 415 ~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~ 494 (1018)
T KOG2002|consen 415 EAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKST 494 (1018)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccc
Confidence 8887776553 34566777888999999999988876 1211
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003891 167 -ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 245 (788)
Q Consensus 167 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 245 (788)
....+++|.++...++++.|.+.|...++.+|....++..+|.+....++..+|...++.+++.+..++.++..+|.++
T Consensus 495 ~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~ 574 (1018)
T KOG2002|consen 495 NLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLH 574 (1018)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHH
Confidence 2247889999999999999999999999999999999999988888888899999999999998888888888888777
Q ss_pred HHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHhhCCCChhhHHhHHH
Q 003891 246 TVQGKMDAAAEMIEKAIAANP--TYAEAYNNLGVLYRD------------AGSISLAIDAYEQCLKIDPDSRNAGQNRLL 311 (788)
Q Consensus 246 ~~~g~~~eA~~~l~kal~~~p--~~~~~~~~la~~~~~------------~g~~~eA~~~~~~al~l~p~~~~a~~~~ll 311 (788)
....++..|.+-|+..++.-. .++.+...||.++.+ .+.+++|++.|.++++.+|.|.-+....
T Consensus 575 l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGI-- 652 (1018)
T KOG2002|consen 575 LKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGI-- 652 (1018)
T ss_pred HhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccch--
Confidence 777766666665555554321 334555566665543 3456777777777777777776665553
Q ss_pred HhhhccCCCchHHHHHHHH
Q 003891 312 AMNYINEGHDDKLFEAHRD 330 (788)
Q Consensus 312 a~~~l~~g~~~~~~~~~~~ 330 (788)
+..+...|...++.....+
T Consensus 653 giVLA~kg~~~~A~dIFsq 671 (1018)
T KOG2002|consen 653 GIVLAEKGRFSEARDIFSQ 671 (1018)
T ss_pred hhhhhhccCchHHHHHHHH
Confidence 3333444555554444433
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-19 Score=192.22 Aligned_cols=277 Identities=22% Similarity=0.274 Sum_probs=252.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 25 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 104 (788)
Q Consensus 25 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~ 104 (788)
.++...+..++..+++.+..++.+..++.+|-+..++-..--++.++|+..+-...-.+.++..|+.+..|+..|..|..
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHH
Confidence 44667788899999999999999999999999888775555599999999998888899999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 003891 105 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 184 (788)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 184 (788)
.|++.+|..+|.|+..++|....+|...+.++.. .+..++|+.+|..|-++-|........+|.-|...++++
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~-------e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAG-------EGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhh-------cchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 9999999999999999999998877766655554 669999999999999999998888889999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHHHcCCHHHHHHH
Q 003891 185 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP-------NFSQSLNNLGVVYTVQGKMDAAAEM 257 (788)
Q Consensus 185 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~eA~~~ 257 (788)
-|.++|.+++.+.|.++-.+..+|.+.+..+.|.+|..+|++++..-+ .....+.+||.++.+++.+++|+.+
T Consensus 398 LAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 398 LAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999999999999999999999999999999999999999999994421 2344689999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHh
Q 003891 258 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 308 (788)
Q Consensus 258 l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 308 (788)
+++++.+.|.++.++..+|.+|..+|+++.|+++|.+++.++|++..+..-
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~l 528 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISEL 528 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHH
Confidence 999999999999999999999999999999999999999999998766543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.5e-19 Score=195.94 Aligned_cols=297 Identities=22% Similarity=0.246 Sum_probs=189.3
Q ss_pred CHHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003891 1 MLVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGC 80 (788)
Q Consensus 1 ~Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 80 (788)
+|+..|+++++++|.+..+...++.+-.. ......+..+...+.++...++.++.++..|+..++..|+|..+..+
T Consensus 217 ~a~~a~~ralqLdp~~v~alv~L~~~~l~----~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~l 292 (1018)
T KOG2002|consen 217 KALLAFERALQLDPTCVSALVALGEVDLN----FNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHL 292 (1018)
T ss_pred hHHHHHHHHHhcChhhHHHHHHHHHHHHH----ccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHH
Confidence 47888999999999888875555544221 22234456677777777777777777777777777777777777777
Q ss_pred HHHHHHhCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHhhhhhhhcCCHHHHHHHH
Q 003891 81 YEKAALERP---MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF-EIAKNNMAIALTDLGTKVKLEGDINQGVAYY 156 (788)
Q Consensus 81 ~~kal~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~ 156 (788)
...++.... ..++.++.+|.+|..+|+|++|..+|.++++.++++ ...+..+++.+.. .|+++.|+.+|
T Consensus 293 a~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~-------~~dle~s~~~f 365 (1018)
T KOG2002|consen 293 AEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIK-------RGDLEESKFCF 365 (1018)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHH-------hchHHHHHHHH
Confidence 766665432 234456777777777777777777777777766665 4455555665555 34667777777
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcC----ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Q 003891 157 KKALYYNWHYADAMYNLGVAYGEML----KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-- 230 (788)
Q Consensus 157 ~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-- 230 (788)
++.++..|++.+....+|.+|...+ ..++|..+..++++..|.+.++|..++.++....-+.. +.+|.+|+..
T Consensus 366 Ekv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~ 444 (1018)
T KOG2002|consen 366 EKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILE 444 (1018)
T ss_pred HHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHH
Confidence 7777777777776666666666654 45666666666666666666666666666654433333 6666666533
Q ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003891 231 ---KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-----NPTY-----AEAYNNLGVLYRDAGSISLAIDAYEQCLK 297 (788)
Q Consensus 231 ---~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~-----~p~~-----~~~~~~la~~~~~~g~~~eA~~~~~~al~ 297 (788)
.+--++.++++|..++..|++++|...+.+++.. +++. ....+++|.++..+++++.|.+.|...++
T Consensus 445 ~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk 524 (1018)
T KOG2002|consen 445 SKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK 524 (1018)
T ss_pred HcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 2333556666666666666666666666666654 1111 23456666666666666666666666666
Q ss_pred hCCCChhhHHhH
Q 003891 298 IDPDSRNAGQNR 309 (788)
Q Consensus 298 l~p~~~~a~~~~ 309 (788)
..|...+++..+
T Consensus 525 ehp~YId~ylRl 536 (1018)
T KOG2002|consen 525 EHPGYIDAYLRL 536 (1018)
T ss_pred HCchhHHHHHHh
Confidence 666666665543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-21 Score=204.78 Aligned_cols=261 Identities=21% Similarity=0.201 Sum_probs=122.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 003891 29 DLGTSLKLAGNTQDGIQKYYEALKI--DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106 (788)
Q Consensus 29 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 106 (788)
.+|..++..|++++|++.+++.+.. .|++...|..+|.+....+++++|+..|++++..++.++..+..++.+ ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 5588888999999999999776554 488999999999999999999999999999999999988899899888 7999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChH
Q 003891 107 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--WHYADAMYNLGVAYGEMLKFD 184 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~ 184 (788)
++++|+++++++.+..++ +..+ .....++...++++++...++++.... +.++..+..+|.++.+.|+.+
T Consensus 92 ~~~~A~~~~~~~~~~~~~-~~~l-------~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGD-PRYL-------LSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPD 163 (280)
T ss_dssp ----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHH
T ss_pred cccccccccccccccccc-cchh-------hHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 999999999999876644 2222 233344556789999999999987655 677889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003891 185 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 264 (788)
Q Consensus 185 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~ 264 (788)
+|+..|+++++.+|++..+...++.++...|+++++...++...+..|.++..+..+|.++...|++++|+.+|+++++.
T Consensus 164 ~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 164 KALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999988888888899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 265 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 265 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
+|+++..+..+|.++...|+.++|..+++++++.
T Consensus 244 ~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 244 NPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp STT-HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999998763
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.5e-19 Score=175.39 Aligned_cols=283 Identities=17% Similarity=0.227 Sum_probs=225.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 106 (788)
.+.+|..++..|++..|+..|..+++.+|++..+++..|.+|..+|+-.-|+.-+.+++++.|+..-+....|.+++++|
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHH---HHHHHH-----HHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 107 DLESAIACYERCLAVSPNFEIA---KNNMAI-----ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 178 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~~---~~~la~-----~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 178 (788)
++++|..-|.+.++.+|++... ...++. .+......+...|+...|+++....+++.|-+...+...+.+|.
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYI 200 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 9999999999999999965422 222221 12223333445677777777777777777777777777777777
Q ss_pred HcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---------------------
Q 003891 179 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS--------------------- 237 (788)
Q Consensus 179 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~--------------------- 237 (788)
..|+...|+.-++.+-++..++.+.++.++.+++..|+.+.++...+++++++|++...
T Consensus 201 ~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~i 280 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAI 280 (504)
T ss_pred hcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777776655321
Q ss_pred -----------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003891 238 -----------------------------LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 288 (788)
Q Consensus 238 -----------------------------~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA 288 (788)
...+..|+...+++.+|+..+.+++..+|++.+++...+.+|.....|+.|
T Consensus 281 e~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~A 360 (504)
T KOG0624|consen 281 EEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDA 360 (504)
T ss_pred hhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHH
Confidence 122334455567778888888888888888888888888888888888888
Q ss_pred HHHHHHHHhhCCCChhhHHhH
Q 003891 289 IDAYEQCLKIDPDSRNAGQNR 309 (788)
Q Consensus 289 ~~~~~~al~l~p~~~~a~~~~ 309 (788)
+..|+++.+.++++..+...+
T Consensus 361 I~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 361 IHDYEKALELNESNTRAREGL 381 (504)
T ss_pred HHHHHHHHhcCcccHHHHHHH
Confidence 888888888888887776554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.6e-19 Score=201.36 Aligned_cols=217 Identities=17% Similarity=0.096 Sum_probs=168.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhh
Q 003891 73 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNR---------GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 143 (788)
Q Consensus 73 ~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~ 143 (788)
++++|+.+|+++++++|+++.++..+|.+|... +++++|+..++++++++|++..++..++.++..
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~----- 350 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI----- 350 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----
Confidence 467888888888888888888888887776533 347788888888888888888877777776665
Q ss_pred hhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003891 144 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 223 (788)
Q Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 223 (788)
.|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.+...+..++.+++..|++++|+..
T Consensus 351 --~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 351 --HSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred --ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 347888888888888888888888888888888888888888888888888888777666666667777888888888
Q ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 224 YQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 224 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
++++++.. |+++..+..+|.++..+|++++|...+++.....|....+...++..|...|+ +|...+++.++.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHH
Confidence 88887764 67777788888888888888888888888877777777777788888777774 666666665543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-18 Score=183.16 Aligned_cols=305 Identities=20% Similarity=0.295 Sum_probs=226.9
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|+..|.+++.++|.+.-. |.+..-+|...|+|++|++--.+.++++|..+..|..+|..+.-+|+|++|+..|
T Consensus 21 ai~~~t~ai~l~p~nhvl-------ySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay 93 (539)
T KOG0548|consen 21 AIRLFTEAIMLSPTNHVL-------YSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAY 93 (539)
T ss_pred HHHHHHHHHccCCCccch-------hcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHH
Confidence 678889999999987665 5566666777788888988888888889998889999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCC---------------------CHHHHHHHHHHHHh---h----------------
Q 003891 82 EKAALERPMYAEAYCNMGVIYKNRG---------------------DLESAIACYERCLA---V---------------- 121 (788)
Q Consensus 82 ~kal~~~p~~~~~~~~la~~~~~~g---------------------~~~~A~~~~~~al~---~---------------- 121 (788)
.+.++.+|++...+..++.++.... ++......|.+.++ .
T Consensus 94 ~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~ 173 (539)
T KOG0548|consen 94 SEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMK 173 (539)
T ss_pred HHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHH
Confidence 8888888887776666666552210 00000001111110 0
Q ss_pred -------------------------CCC-----------cHH---HHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh
Q 003891 122 -------------------------SPN-----------FEI---AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 162 (788)
Q Consensus 122 -------------------------~p~-----------~~~---~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~ 162 (788)
.|. +.. -....+.-...+|+......++..|++.|.+++++
T Consensus 174 a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el 253 (539)
T KOG0548|consen 174 ADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL 253 (539)
T ss_pred HHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH
Confidence 000 000 01123555555666666666666666666666555
Q ss_pred CCCC----------------------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----
Q 003891 163 NWHY----------------------------------------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFN----- 197 (788)
Q Consensus 163 ~p~~----------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----- 197 (788)
+.+. ..+...+|..|...++++.|+.+|++++...
T Consensus 254 ~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ 333 (539)
T KOG0548|consen 254 ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL 333 (539)
T ss_pred hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH
Confidence 3321 1123346678888899999999999988642
Q ss_pred ---------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 198 ---------------------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 256 (788)
Q Consensus 198 ---------------------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 256 (788)
|.-..--..-|..++..|+|.+|+..|.+++..+|+++..|.+.|.||.++|++..|+.
T Consensus 334 ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~ 413 (539)
T KOG0548|consen 334 LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALK 413 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHH
Confidence 22233344568999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHh
Q 003891 257 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 313 (788)
Q Consensus 257 ~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~ 313 (788)
..+++++++|+....|+..|.++..+.+|++|.+.|+++++.+|++.++...+.-+.
T Consensus 414 Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 414 DAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCV 470 (539)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988776644433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.6e-19 Score=201.80 Aligned_cols=252 Identities=14% Similarity=0.075 Sum_probs=195.5
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHH--HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTS--LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALG 79 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 79 (788)
|++.|+++++.+|++..++..++.++..++.. ....+++++|+..++++++++|+++.++..+|.++...|++++|+.
T Consensus 280 A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~ 359 (553)
T PRK12370 280 ALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSL 359 (553)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH
Confidence 78999999999999999988888877766542 2245678999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHH
Q 003891 80 CYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 159 (788)
Q Consensus 80 ~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~a 159 (788)
.|+++++++|+++.+++.+|.++...|++++|+..++++++++|.+......++. .+...|++++|+..++++
T Consensus 360 ~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~-------~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 360 LFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLW-------ITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHH-------HHHhccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998654333222 233356788888888888
Q ss_pred HHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 003891 160 LYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 238 (788)
Q Consensus 160 l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 238 (788)
++.. |+++..+..+|.++...|++++|...+++.....|....+...++..|...|+ +|...+++.++.........
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~ 510 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNP 510 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCc
Confidence 7764 66777777888888888888888888887777777777777777777777663 66666666554433222222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 003891 239 NNLGVVYTVQGKMDAAAEMIEKAIA 263 (788)
Q Consensus 239 ~~la~~~~~~g~~~eA~~~l~kal~ 263 (788)
..+..+|.-.|+-+.+..+ +++.+
T Consensus 511 ~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 511 GLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred hHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 2355555566666655555 44443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-19 Score=190.88 Aligned_cols=240 Identities=20% Similarity=0.255 Sum_probs=185.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 107 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~ 107 (788)
+..|..+++.|+..+|.-+|+.+++.+|.++++|..||.+....++-..|+..++++++++|++.+++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 55788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHH
Q 003891 108 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--HYADAMYNLGVAYGEMLKFDM 185 (788)
Q Consensus 108 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~ 185 (788)
-.+|++++.+-+...|........--.-.............+..-.++|-.+....| .++++...||.+|...|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999999999988775321100000000000000111223444556666666666 567777777777777777777
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003891 186 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 265 (788)
Q Consensus 186 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~ 265 (788)
|+++|+.+|...|++...|+.||..+....+.++|+..|++|+++.|....+.++||..+..+|.|++|.++|-.++.+.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777765
Q ss_pred CC
Q 003891 266 PT 267 (788)
Q Consensus 266 p~ 267 (788)
+.
T Consensus 529 ~k 530 (579)
T KOG1125|consen 529 RK 530 (579)
T ss_pred hc
Confidence 43
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-17 Score=177.75 Aligned_cols=308 Identities=16% Similarity=0.081 Sum_probs=270.7
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|...|..+|+..|..... |...+..-...|..++-..++++++...|.....|...+..+...|+...|...+
T Consensus 535 arAVya~alqvfp~k~sl-------Wlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il 607 (913)
T KOG0495|consen 535 ARAVYAHALQVFPCKKSL-------WLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVIL 607 (913)
T ss_pred HHHHHHHHHhhccchhHH-------HHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHH
Confidence 567889999999988776 4445555566789999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH
Q 003891 82 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 161 (788)
Q Consensus 82 ~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~ 161 (788)
.++++.+|++.++|+..-.+.....+++.|..+|.++....|... +++.-......+++.++|+.+++++++
T Consensus 608 ~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeR--------v~mKs~~~er~ld~~eeA~rllEe~lk 679 (913)
T KOG0495|consen 608 DQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTER--------VWMKSANLERYLDNVEEALRLLEEALK 679 (913)
T ss_pred HHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcch--------hhHHHhHHHHHhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998877633 333333444446799999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 003891 162 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 241 (788)
Q Consensus 162 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 241 (788)
..|+....|..+|+++..+++.+.|.+.|...++..|.....|..++.+-.+.|+...|...++++.-.+|.+...|...
T Consensus 680 ~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~ 759 (913)
T KOG0495|consen 680 SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLES 759 (913)
T ss_pred hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC------------------------------HHHHHHHHHHHHHcCCHHHHHHH
Q 003891 242 GVVYTVQGKMDAAAEMIEKAIAANPTY------------------------------AEAYNNLGVLYRDAGSISLAIDA 291 (788)
Q Consensus 242 a~~~~~~g~~~eA~~~l~kal~~~p~~------------------------------~~~~~~la~~~~~~g~~~eA~~~ 291 (788)
..+-.+.|+.++|.....+|++..|++ +.++...|.++....++++|.++
T Consensus 760 Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~W 839 (913)
T KOG0495|consen 760 IRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREW 839 (913)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999876654 45667789999999999999999
Q ss_pred HHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHH
Q 003891 292 YEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE 326 (788)
Q Consensus 292 ~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~ 326 (788)
|.++++.+|++-++|..+ ...++..|..++-.+
T Consensus 840 f~Ravk~d~d~GD~wa~f--ykfel~hG~eed~ke 872 (913)
T KOG0495|consen 840 FERAVKKDPDNGDAWAWF--YKFELRHGTEEDQKE 872 (913)
T ss_pred HHHHHccCCccchHHHHH--HHHHHHhCCHHHHHH
Confidence 999999999999998763 445566676554333
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.7e-19 Score=173.34 Aligned_cols=289 Identities=18% Similarity=0.179 Sum_probs=250.1
Q ss_pred HcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CC-------CHHHHHHHHHHHHHcCCHHHHHHH
Q 003891 11 SADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID---PH-------YAPAYYNLGVVYSELMQYDTALGC 80 (788)
Q Consensus 11 ~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~lg~~~~~~g~~~~A~~~ 80 (788)
+++|..-.....+...++.. +++..++...|-......++.+ |. +......+|.||+.+|-+.+|.+.
T Consensus 168 RLN~tkYa~~p~l~kaLFey--~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~Aekq 245 (478)
T KOG1129|consen 168 RLNPTKYAERPTLVKALFEY--LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQ 245 (478)
T ss_pred hcCchhhccChHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHH
Confidence 44555444444556666654 5666788888887777766552 11 122336789999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHH
Q 003891 81 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 160 (788)
Q Consensus 81 ~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al 160 (788)
++.+++..|. ++.+..|+.+|....+...|+..+.+.++..|.+...... ++.++...+++++|.++|+.++
T Consensus 246 lqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g-------~ARi~eam~~~~~a~~lYk~vl 317 (478)
T KOG1129|consen 246 LQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLG-------QARIHEAMEQQEDALQLYKLVL 317 (478)
T ss_pred HHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhh-------hHHHHHHHHhHHHHHHHHHHHH
Confidence 9999998765 8899999999999999999999999999999998754444 4555555679999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHH
Q 003891 161 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---NFSQS 237 (788)
Q Consensus 161 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p---~~~~~ 237 (788)
+.+|.+.++...+|.-|+..++.+-|+.+|++.++..-.+++.+.++|.|.+..++++-++..|++++.... .-.++
T Consensus 318 k~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDv 397 (478)
T KOG1129|consen 318 KLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADV 397 (478)
T ss_pred hcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999998743 33679
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhH
Q 003891 238 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 309 (788)
Q Consensus 238 ~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~ 309 (788)
|+++|.+....|++.-|..+|+-++..++++.+++.+||.+-.+.|+.++|..+++.+-...|+-.+...|+
T Consensus 398 WYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 398 WYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNL 469 (478)
T ss_pred hhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccce
Confidence 999999999999999999999999999999999999999999999999999999999999999988777664
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-18 Score=182.98 Aligned_cols=263 Identities=20% Similarity=0.322 Sum_probs=233.4
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
..++.+..++.+|-+.+.. -..+| ++...|+..+-..+-.+.++..|+.+-.|+..|..|+..|++.+|..+|
T Consensus 263 c~kit~~lle~dpfh~~~~------~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~ 335 (611)
T KOG1173|consen 263 CLKITEELLEKDPFHLPCL------PLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYF 335 (611)
T ss_pred HHHHhHHHHhhCCCCcchH------HHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHH
Confidence 4577888999999888763 23444 6777788888888888899999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH
Q 003891 82 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 161 (788)
Q Consensus 82 ~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~ 161 (788)
.|+..++|....+|...|..+...|..++|+.+|..|-++.|....... .+|.-|...++++-|.++|.+++.
T Consensus 336 SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L-------Ylgmey~~t~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 336 SKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL-------YLGMEYMRTNNLKLAEKFFKQALA 408 (611)
T ss_pred HHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH-------HHHHHHHHhccHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998654433 345556667899999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003891 162 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP-------HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 234 (788)
Q Consensus 162 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 234 (788)
+.|.++-++..+|.+.+..+.|.+|..+|+.++..-+ .....+.++|.++.+++++++|+.+|++++.+.|.+
T Consensus 409 i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~ 488 (611)
T KOG1173|consen 409 IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD 488 (611)
T ss_pred cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999994321 235578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003891 235 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 278 (788)
Q Consensus 235 ~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~ 278 (788)
..++..+|.+|..+|+++.|+++|.+++.+.|++..+-..|+.+
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 99999999999999999999999999999999987665555533
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-17 Score=185.64 Aligned_cols=286 Identities=16% Similarity=0.193 Sum_probs=190.4
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|+..+.++++++|.+..+ |+.+|.+|.++|+.+++...+-.|-.++|++.+.|..++....++|++++|.-+|
T Consensus 158 A~~i~~EvIkqdp~~~~a-------y~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 158 AEEILMEVIKQDPRNPIA-------YYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred HHHHHHHHHHhCccchhh-------HHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 678889999999998888 7777888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH
Q 003891 82 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 161 (788)
Q Consensus 82 ~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~ 161 (788)
.+|++.+|.+....+..+.+|.+.|+...|...|.++++..|... +...-..-...+..+...++-+.|++.++.++.
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d--~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVD--IERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchh--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999988322 111111222234444555566888888888877
Q ss_pred hCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------------------------------------------
Q 003891 162 YNW--HYADAMYNLGVAYGEMLKFDMAIVFYELAFHF------------------------------------------- 196 (788)
Q Consensus 162 ~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------------------------------- 196 (788)
... ...+.+..++.++....+++.|..........
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 322 22334566677777777777776665544330
Q ss_pred ------------------C--C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHH
Q 003891 197 ------------------N--P-HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN-FSQSLNNLGVVYTVQGKMDAA 254 (788)
Q Consensus 197 ------------------~--p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA 254 (788)
+ + +....+..++..|...|++.+|+.+|..+....+. +..+|+.+|.||..+|.+++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 0 1 12334444455555555555555555554443321 233455555555555555555
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 255 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 296 (788)
Q Consensus 255 ~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 296 (788)
+++|++++...|++.++...|+.++.++|+.++|.+.+++..
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 555555555555555555555555555555555555544443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-17 Score=183.92 Aligned_cols=294 Identities=14% Similarity=-0.005 Sum_probs=174.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA-EAYCNMGVIYKNR 105 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~-~~~~~la~~~~~~ 105 (788)
....|......|+++.|.+.+.++.+..|+....+...|.++..+|++++|.++++++.+..|+.. .+....+.++...
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ 166 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence 445566666667777777777776666666666666666777777777777777777766666653 3444456667777
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh---CCCCH-HHHHHHHHHHHHcC
Q 003891 106 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY---NWHYA-DAMYNLGVAYGEML 181 (788)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~-~~~~~la~~~~~~g 181 (788)
|++++|...+++.++..|+++.+...++.++.. .|++++|.+.+.+..+. ++... ........-+...+
T Consensus 167 ~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~-------~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 167 NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIR-------SGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777766655544444433 44667666666666654 22222 11112222223333
Q ss_pred ChHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHHcCCHHHHH
Q 003891 182 KFDMAIVFYELAFHFNP----HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL--NNLGVVYTVQGKMDAAA 255 (788)
Q Consensus 182 ~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~--~~la~~~~~~g~~~eA~ 255 (788)
..+++.+.+.++.+..| +++..+..++..+...|++++|.+.++++++..|++.... ..........++.++++
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHH
Confidence 44444555555555555 3566666666777777777777777777777666665421 11222223345666667
Q ss_pred HHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHH
Q 003891 256 EMIEKAIAANPTYA--EAYNNLGVLYRDAGSISLAIDAYE--QCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 330 (788)
Q Consensus 256 ~~l~kal~~~p~~~--~~~~~la~~~~~~g~~~eA~~~~~--~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~ 330 (788)
+.++++++..|+++ .....+|.++.++|++++|.++|+ ++++..|++.... .++..+...|+.+++.+.+++
T Consensus 320 ~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~---~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 320 KLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA---MAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH---HHHHHHHHcCCHHHHHHHHHH
Confidence 77777777777766 666667777777777777777777 4555666554422 345555666666665554443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.5e-18 Score=171.68 Aligned_cols=286 Identities=16% Similarity=0.187 Sum_probs=253.3
Q ss_pred HHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003891 8 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 87 (788)
Q Consensus 8 kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~ 87 (788)
.-....|+|... +..+|.+++..|++++|+..|+++...+|.+....-..|..+...|++++-..+-...+..
T Consensus 223 e~~~~lr~NvhL-------l~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~ 295 (564)
T KOG1174|consen 223 HDNTTLRCNEHL-------MMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK 295 (564)
T ss_pred HhhccCCccHHH-------HHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh
Confidence 334445555554 6778888889999999999999999999999999999999999999999988888888888
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCH
Q 003891 88 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 167 (788)
Q Consensus 88 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 167 (788)
......-|+--+...+..+++..|+.+-+++|+.+|.+..++...+.++.+ .++.++|+-.|+.+..+.|-..
T Consensus 296 ~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~-------~~R~~~A~IaFR~Aq~Lap~rL 368 (564)
T KOG1174|consen 296 VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIA-------LERHTQAVIAFRTAQMLAPYRL 368 (564)
T ss_pred hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHh-------ccchHHHHHHHHHHHhcchhhH
Confidence 878888899999999999999999999999999999998766655555555 5699999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH-HHH-HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003891 168 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG-VIY-KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 245 (788)
Q Consensus 168 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~-~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 245 (788)
+.|..+-.+|...|++.+|...-+.+++..|.++.++..+| .++ ..-.--++|.+++++++.++|....+...++.++
T Consensus 369 ~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~ 448 (564)
T KOG1174|consen 369 EIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELC 448 (564)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987 333 3344568999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHh
Q 003891 246 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 308 (788)
Q Consensus 246 ~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 308 (788)
...|.++.++..+++.+...|+ ...+..||.++...+.+++|.++|..|+.++|++..+...
T Consensus 449 ~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~G 510 (564)
T KOG1174|consen 449 QVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRG 510 (564)
T ss_pred HhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHH
Confidence 9999999999999999999887 5678999999999999999999999999999998877554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7e-18 Score=178.07 Aligned_cols=288 Identities=25% Similarity=0.307 Sum_probs=222.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~ 105 (788)
-+...|+..+..|+|+.|+.+|.+++.++|.|...|.+...+|..+|+|++|++--.+.++++|..+..|..+|..+...
T Consensus 4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL 83 (539)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh---------hhhh-cC----CHHHHHHHHHHHHHh---------
Q 003891 106 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT---------KVKL-EG----DINQGVAYYKKALYY--------- 162 (788)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~---------~~~~-~g----~~~~A~~~~~~al~~--------- 162 (788)
|+|++|+..|.+.++.+|++......++.++..... .+.. .+ ++-..-..|.+.++.
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred ccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 999999999999999999999888777766622100 0000 00 000000111111110
Q ss_pred -----------------------------------CCC---------------------CHHHHHHHHHHHHHcCChHHH
Q 003891 163 -----------------------------------NWH---------------------YADAMYNLGVAYGEMLKFDMA 186 (788)
Q Consensus 163 -----------------------------------~p~---------------------~~~~~~~la~~~~~~g~~~~A 186 (788)
.|. .......+|+..+...+++.|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 110 011256789999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHH-----------------------------------------HHHHHHHcCCHHHHHHHHH
Q 003891 187 IVFYELAFHFNPHCAEACNN-----------------------------------------LGVIYKDRDNLDKAVECYQ 225 (788)
Q Consensus 187 ~~~~~~al~~~p~~~~~~~~-----------------------------------------la~~~~~~g~~~eA~~~~~ 225 (788)
++.|..+++++ .+...+.+ +|..|.+.++++.|+.+|+
T Consensus 244 ~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 244 IQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 99999999886 43333222 4445666677788888888
Q ss_pred HHHhhC--------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003891 226 MALSIK--------------------------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 279 (788)
Q Consensus 226 ~al~~~--------------------------p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~ 279 (788)
+++... |.-..--...|..++..|+|.+|+.+|.+++..+|+++..|.+.|.||
T Consensus 323 kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 323 KALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACY 402 (539)
T ss_pred HHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 877542 222333455688889999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhh
Q 003891 280 RDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 314 (788)
Q Consensus 280 ~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~ 314 (788)
.++|++..|+...+++++++|++..++.....++.
T Consensus 403 ~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALR 437 (539)
T ss_pred HHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 99999999999999999999998888776544443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.1e-17 Score=188.95 Aligned_cols=323 Identities=12% Similarity=0.044 Sum_probs=244.4
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHH---------------------------HHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 003891 2 LVASYHKALSADPSYKPAAECLAIV---------------------------LTDLGTSLKLAGNTQDGIQKYYEALKID 54 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~---------------------------l~~lg~~~~~~g~~~~A~~~~~~al~~~ 54 (788)
|+..|+++++.+|++..+...++.+ +..+|..+...|++++|++.|+++++.+
T Consensus 53 Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d 132 (822)
T PRK14574 53 VLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD 132 (822)
T ss_pred HHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6777788888888774221122221 2223667888899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 003891 55 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 134 (788)
Q Consensus 55 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 134 (788)
|+++.++..++..+...++.++|++.++++...+|.+... ..++.++...++..+|++.++++++.+|++......+..
T Consensus 133 P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~ 211 (822)
T PRK14574 133 PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLE 211 (822)
T ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999885554 556666666788877999999999999998887776665
Q ss_pred HHHHhhhhhh--------------------------------------hcC---CHHHHHHHHHHHHHh---CCC-----
Q 003891 135 ALTDLGTKVK--------------------------------------LEG---DINQGVAYYKKALYY---NWH----- 165 (788)
Q Consensus 135 ~l~~lg~~~~--------------------------------------~~g---~~~~A~~~~~~al~~---~p~----- 165 (788)
++..+|.... ..+ -.+.|+.-+++.+.. .|.
T Consensus 212 ~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~ 291 (822)
T PRK14574 212 ILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADY 291 (822)
T ss_pred HHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHH
Confidence 5544331100 000 123344444444442 221
Q ss_pred ----------------------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC------CCHHHHH
Q 003891 166 ----------------------------------YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP------HCAEACN 205 (788)
Q Consensus 166 ----------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~ 205 (788)
-..+....|..|...++.++|+.+|++++...+ .......
T Consensus 292 ~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~ 371 (822)
T PRK14574 292 QRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDAD 371 (822)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHH
Confidence 122355678889999999999999999987652 2344457
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 003891 206 NLGVIYKDRDNLDKAVECYQMALSIKP---------------NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 270 (788)
Q Consensus 206 ~la~~~~~~g~~~eA~~~~~~al~~~p---------------~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~ 270 (788)
.|...|...+++++|..++++..+..| +..+....++.++...|++.+|++.+++.+...|.+..
T Consensus 372 ~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~ 451 (822)
T PRK14574 372 DLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQN 451 (822)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 788899999999999999999988443 33557788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHH
Q 003891 271 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 327 (788)
Q Consensus 271 ~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~ 327 (788)
+...+|.++...|++.+|++.++.+..++|++..+.... +..++..++..++...
T Consensus 452 l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~--~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 452 LRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQ--AETAMALQEWHQMELL 506 (822)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHH--HHHHHhhhhHHHHHHH
Confidence 999999999999999999999999999999998887764 4455555655554433
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-19 Score=190.73 Aligned_cols=261 Identities=22% Similarity=0.249 Sum_probs=122.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 003891 61 YYNLGVVYSELMQYDTALGCYEKAALE--RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 138 (788)
Q Consensus 61 ~~~lg~~~~~~g~~~~A~~~~~kal~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~ 138 (788)
.+.+|.+++..|++++|++.+.+.+.. .|++...|..+|.+....+++++|+..|++++..++.++.....+
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l------ 84 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERL------ 84 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc------
Confidence 346799999999999999999776544 488899999999999999999999999999999988866544333
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCC
Q 003891 139 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--PHCAEACNNLGVIYKDRDN 216 (788)
Q Consensus 139 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~ 216 (788)
..+ ...+++++|+++++++.+..+ ++..+.....++...++++++...++++.... +.++..+..+|.++.+.|+
T Consensus 85 -~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~ 161 (280)
T PF13429_consen 85 -IQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD 161 (280)
T ss_dssp ------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH
T ss_pred -ccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence 333 357899999999999987664 46667778888999999999999999977654 6788999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 217 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 296 (788)
Q Consensus 217 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 296 (788)
.++|+.+|+++++.+|++..+...++.++...|+++++.+.++...+..|+++..+..+|.++..+|++++|+.+|++++
T Consensus 162 ~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 162 PDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999988888899999999999999999999999999999
Q ss_pred hhCCCChhhHHhHHHHhhhccCCCchHHHHHHHHHH
Q 003891 297 KIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWG 332 (788)
Q Consensus 297 ~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~~~ 332 (788)
+.+|+++..... ++..+...|..+++++..++..
T Consensus 242 ~~~p~d~~~~~~--~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 242 KLNPDDPLWLLA--YADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHSTT-HHHHHH--HHHHHT----------------
T ss_pred cccccccccccc--cccccccccccccccccccccc
Confidence 999999988765 5677788888888887665543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-16 Score=175.70 Aligned_cols=268 Identities=11% Similarity=-0.005 Sum_probs=224.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~ 105 (788)
+...|......|++++|..++.++.+..|++. .+....+.++...|++++|...+++..+..|+++.++..++.++...
T Consensus 121 ~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~ 200 (409)
T TIGR00540 121 LIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS 200 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 55678899999999999999999999998875 56666799999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcC
Q 003891 106 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW----HYADAMYNLGVAYGEML 181 (788)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g 181 (788)
|++++|++.+++..+....++.....+. .....+ ....+..+++.+.+.++.+..| +++..+..++..+...|
T Consensus 201 ~d~~~a~~~l~~l~k~~~~~~~~~~~l~-~~a~~~--~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g 277 (409)
T TIGR00540 201 GAWQALDDIIDNMAKAGLFDDEEFADLE-QKAEIG--LLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCD 277 (409)
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHH-HHHHHH--HHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCC
Confidence 9999999999999988655443322111 111111 1223344556668888888777 58999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHH
Q 003891 182 KFDMAIVFYELAFHFNPHCAEAC--NNLGVIYKDRDNLDKAVECYQMALSIKPNFS--QSLNNLGVVYTVQGKMDAAAEM 257 (788)
Q Consensus 182 ~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~g~~~eA~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~eA~~~ 257 (788)
++++|++.++++++..|++.... ..........++.+++++.++++++..|+++ ..+..+|+++.+.|++++|.++
T Consensus 278 ~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~ 357 (409)
T TIGR00540 278 DHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADA 357 (409)
T ss_pred ChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHH
Confidence 99999999999999999887532 2333334456889999999999999999999 8899999999999999999999
Q ss_pred HH--HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 258 IE--KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 258 l~--kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
|+ ++++..|+... +..+|.++.++|+.++|.++|++++..
T Consensus 358 le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 358 FKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99 57778887655 669999999999999999999998764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-17 Score=174.98 Aligned_cols=236 Identities=17% Similarity=0.143 Sum_probs=142.7
Q ss_pred CChHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 003891 38 GNTQDGIQKYYEALKIDP---H-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 113 (788)
Q Consensus 38 g~~~~A~~~~~~al~~~p---~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~ 113 (788)
+..+.++..+.+++...| . .+..|+.+|.+|...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 455666666767665322 2 255677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003891 114 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 193 (788)
Q Consensus 114 ~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 193 (788)
.|+++++++|++..++.+++.++. ..|++++|++.++++++.+|+++..... ..+....+++++|+..+++.
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~-------~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALY-------YGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH-------HCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHH
Confidence 777777777776654444443333 3457777777777777777766532111 12234456677777777665
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHH--HHHHH----HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Q 003891 194 FHFNPHCAEACNNLGVIYKDRDNLDKA--VECYQ----MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP- 266 (788)
Q Consensus 194 l~~~p~~~~~~~~la~~~~~~g~~~eA--~~~~~----~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p- 266 (788)
....+... +. .+..+...|+..++ .+.+. ...++.|...++|+++|.++...|++++|+.+|+++++.+|
T Consensus 192 ~~~~~~~~--~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 192 YEKLDKEQ--WG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred HhhCCccc--cH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 54322211 11 23444444544332 22222 22244556667788888888888888888888888888775
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 003891 267 TYAEAYNNLGVLYRDAGS 284 (788)
Q Consensus 267 ~~~~~~~~la~~~~~~g~ 284 (788)
++.+..+.+..+....++
T Consensus 269 ~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 269 NFVEHRYALLELALLGQD 286 (296)
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 555655555555444333
|
|
| >PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-17 Score=181.44 Aligned_cols=267 Identities=16% Similarity=0.116 Sum_probs=174.2
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCCCCC---cccccccCCCCeEEecc---cCCCCCCCCCc----------c--EEEecCC
Q 003891 422 EKKVAAMVREDKIDILVELTGHTANN---KLGMMACQPAPVQVTWI---GYPNTTGLPTI----------D--YRITDSL 483 (788)
Q Consensus 422 ~~~~a~~i~~d~idilvdl~g~t~~~---~~~~~a~r~Apvq~~~~---g~~~ttg~~~~----------D--y~i~d~~ 483 (788)
...++..|++.++||+ ||... ..+.++.++|.+-+... |++...+-..+ | +..+| +
T Consensus 269 ~~~l~~~ir~~rpDIV-----Ht~~~~a~l~g~laA~lagvpviv~~~h~~~~~~~~r~~~~e~~~~~~a~~i~~~sd-~ 342 (578)
T PRK15490 269 IKHLVPHLCERKLDYL-----SVWQDGACLMIALAALIAGVPRIQLGLRGLPPVVRKRLFKPEYEPLYQALAVVPGVD-F 342 (578)
T ss_pred HHHHHHHHHHcCCCEE-----EEcCcccHHHHHHHHHhcCCCEEEEeecccCCcchhhHHHHHHHHhhhhceeEecch-h
Confidence 4679999999999999 77543 34555667765554322 23322211100 1 11122 1
Q ss_pred CCC-cCcc----C---CCccceEEcCCCccc--cCCCCCCC-CCC--CCCCCCCCCeEEEecCCC--CcCCHHHHHHHHH
Q 003891 484 ADP-PETK----Q---KHVEELIRLPECFLC--YTPSPEAG-PVC--PTPALTNGFITFGSFNNL--AKITPKVLQVWAR 548 (788)
Q Consensus 484 ~~p-~~~~----~---~~~e~l~~lp~~~~~--~~~~~~~~-~~~--~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~ 548 (788)
+.- .... . .-.+++..+|+..-. |.|....+ ..+ ...+++++.+++|+++++ .|....+++++.+
T Consensus 343 v~~s~~v~~~l~~~lgip~~KI~VIyNGVD~~rf~p~~~~~~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a~ 422 (578)
T PRK15490 343 MSNNHCVTRHYADWLKLEAKHFQVVYNGVLPPSTEPSSEVPHKIWQQFTQKTQDADTTIGGVFRFVGDKNPFAWIDFAAR 422 (578)
T ss_pred hhccHHHHHHHHHHhCCCHHHEEEEeCCcchhhcCccchhhHHHHHHhhhccCCCCcEEEEEEEEehhcCHHHHHHHHHH
Confidence 111 1111 1 124677778864311 22221111 000 012345566788888875 9999999999999
Q ss_pred HHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhh
Q 003891 549 ILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLY 627 (788)
Q Consensus 549 il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~ 627 (788)
+++..|+.+|+++|.| +.++.+++.++++|+. ++|.|+|.. .+....|+.+|||+-|+.+ +.+.+++|||+
T Consensus 423 llk~~pdirLvIVGdG----~~~eeLk~la~elgL~-d~V~FlG~~---~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA 494 (578)
T PRK15490 423 YLQHHPATRFVLVGDG----DLRAEAQKRAEQLGIL-ERILFVGAS---RDVGYWLQKMNVFILFSRYEGLPNVLIEAQM 494 (578)
T ss_pred HHhHCCCeEEEEEeCc----hhHHHHHHHHHHcCCC-CcEEECCCh---hhHHHHHHhCCEEEEcccccCccHHHHHHHH
Confidence 9999999999999987 6778899999999998 899999984 4667778889999999988 55999999999
Q ss_pred hCCceeecCCCccCccchh-HHHhhhCCcccccC--CHHHH---HHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHH
Q 003891 628 MGVPCVTMAGSVHAHNVGV-SLLTKVGLKHLIAK--NEDEY---VQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNF 701 (788)
Q Consensus 628 ~GvPvvt~~g~~~~~r~~~-~~l~~~gl~~~ia~--~~~~y---~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~ 701 (788)
+|+|||+ +++|+ .=+-.-|..+++.+ |.+++ +..+.++..+...+..++++.++.+.+ .|+.+.+
T Consensus 495 ~GlPVVA-------TdvGG~~EiV~dG~nG~LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~e--~FS~e~M 565 (578)
T PRK15490 495 VGVPVIS-------TPAGGSAECFIEGVSGFILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQE--RFTVEHM 565 (578)
T ss_pred hCCCEEE-------eCCCCcHHHcccCCcEEEECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCHHHH
Confidence 9999998 55541 00111244444433 33333 333455666666666777888887754 4999999
Q ss_pred HHHHHHHHHH
Q 003891 702 ALGLESTYRN 711 (788)
Q Consensus 702 ~~~~e~~~~~ 711 (788)
+..++++|..
T Consensus 566 v~~y~ki~~~ 575 (578)
T PRK15490 566 VGTFVKTIAS 575 (578)
T ss_pred HHHHHHHHHh
Confidence 9999998864
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.7e-17 Score=165.06 Aligned_cols=274 Identities=18% Similarity=0.183 Sum_probs=245.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVVYSEL--MQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 104 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~--g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~ 104 (788)
...+..+.++|+++.|++.++-.-+.+... ..+-.+|..+++.+ +++..|.++...++..+..++.++.+.|++.+.
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFA 502 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeee
Confidence 445677889999999999987665555443 33455666666663 479999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 003891 105 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 184 (788)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 184 (788)
.|++++|.+.|++++..+....+ +++++|..+..+|++++|+++|-+.-.+--++.++++.++.+|..+.+..
T Consensus 503 ngd~dka~~~ykeal~ndasc~e-------alfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~a 575 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTE-------ALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPA 575 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHH-------HHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHH
Confidence 99999999999999987766544 55666777777889999999999999888899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003891 185 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 264 (788)
Q Consensus 185 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~ 264 (788)
+|++++.++..+-|+++.++..+|.+|-+.|+-.+|.+++-......|.+.+..-.||..|....-+++|+.+|+++--+
T Consensus 576 qaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaali 655 (840)
T KOG2003|consen 576 QAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI 655 (840)
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHh
Q 003891 265 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 308 (788)
Q Consensus 265 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 308 (788)
.|+...-...++.|+.+.|+|.+|.+.|+......|.+.+...-
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkf 699 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKF 699 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHH
Confidence 99998888999999999999999999999999999998876543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.5e-17 Score=172.85 Aligned_cols=227 Identities=17% Similarity=0.159 Sum_probs=183.8
Q ss_pred cCCHHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhc
Q 003891 71 LMQYDTALGCYEKAALERP---M-YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 146 (788)
Q Consensus 71 ~g~~~~A~~~~~kal~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~ 146 (788)
.++.+.++..+.+++...+ . .+..|+.+|.+|...|++++|+..|+++++++|++..++..++.++..+|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g------ 112 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAG------ 112 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC------
Confidence 3467889999999996433 3 47789999999999999999999999999999999999999999888854
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 147 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 226 (788)
Q Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 226 (788)
++++|+..|+++++++|++..++.++|.++...|++++|++.++++++.+|+++..... ..+....+++++|+..+++
T Consensus 113 -~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 113 -NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred -CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998742222 2234567889999999988
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHH--HHHHH----HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003891 227 ALSIKPNFSQSLNNLGVVYTVQGKMDAA--AEMIE----KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 300 (788)
Q Consensus 227 al~~~p~~~~~~~~la~~~~~~g~~~eA--~~~l~----kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p 300 (788)
++...+... +. .+.++...|+..++ .+.+. ...++.|...++|+++|.++.++|++++|+.+|+++++++|
T Consensus 191 ~~~~~~~~~--~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 191 RYEKLDKEQ--WG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHhhCCccc--cH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 775543222 21 35555566665443 32222 23356677889999999999999999999999999999997
Q ss_pred -CChhhHHh
Q 003891 301 -DSRNAGQN 308 (788)
Q Consensus 301 -~~~~a~~~ 308 (788)
++.+.+..
T Consensus 268 ~~~~e~~~~ 276 (296)
T PRK11189 268 YNFVEHRYA 276 (296)
T ss_pred chHHHHHHH
Confidence 55555443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-16 Score=173.82 Aligned_cols=269 Identities=11% Similarity=-0.004 Sum_probs=221.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA-YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~ 105 (788)
+...+......|+++.|..+|.++.+.+|++... ....+.++...|++++|+..++++.+.+|+++.++..++.+|...
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~ 200 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT 200 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 3444666689999999999999999999987543 345589999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHH-HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 003891 106 GDLESAIACYERCLAVSPNFEIAKNNM-AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 184 (788)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 184 (788)
|++++|++.+.+..+....++.....+ ..++..+........+.+...+.+++.-+..|+++.+...++..+...|+.+
T Consensus 201 gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~ 280 (398)
T PRK10747 201 GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHD 280 (398)
T ss_pred HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHH
Confidence 999999999999988776654432211 1233222222222344555556666655666789999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003891 185 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 264 (788)
Q Consensus 185 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~ 264 (788)
+|.+.++++++. +.+......++.+ ..++.+++++.+++.++.+|+++..+..+|.++...+++++|.++|+++++.
T Consensus 281 ~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 281 TAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999999995 4455555555544 4499999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 003891 265 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 299 (788)
Q Consensus 265 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 299 (788)
.|++. .+..++.++.++|+.++|.++|++++.+.
T Consensus 358 ~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 358 RPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 99854 46789999999999999999999998764
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=171.06 Aligned_cols=244 Identities=19% Similarity=0.259 Sum_probs=224.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 106 (788)
...+|.+|+..|-+.+|.+.++.+++..| .++.+..++.+|....+...|+..+.+.++..|.+...+...+.++..++
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 35689999999999999999999999876 47899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 003891 107 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 186 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 186 (788)
++++|.++|+.+++..|.+.++.. .++..|.-.++.+-|+.+|++.++..-.+++.+.++|.+.+..++++-+
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiA-------cia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIA-------CIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeee-------eeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhh
Confidence 999999999999999999876443 3444555578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003891 187 IVFYELAFHFNP---HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 263 (788)
Q Consensus 187 ~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~ 263 (788)
+..|++++.... .-.++|+++|.+....|++.-|..+|+-++..++++.+++++||.+-.+.|+.++|..++..+-.
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 999999998643 24789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHH
Q 003891 264 ANPTYAEAYNNLGVL 278 (788)
Q Consensus 264 ~~p~~~~~~~~la~~ 278 (788)
..|+-.+..++++.+
T Consensus 458 ~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 458 VMPDMAEVTTNLQFM 472 (478)
T ss_pred hCccccccccceeEE
Confidence 999988887777644
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.5e-18 Score=180.25 Aligned_cols=234 Identities=23% Similarity=0.325 Sum_probs=202.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 003891 62 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 141 (788)
Q Consensus 62 ~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~ 141 (788)
+..|..+++.|+..+|.-+|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.++...++..|.+
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytN--- 365 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTN--- 365 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhh---
Confidence 67899999999999999999999999999999999999999999999999999999999999998777666666555
Q ss_pred hhhhcCCHHHHHHHHHHHHHhCCCCHHHHHH-------HHHHHHHcCChHHHHHHHHHHHhcCC--CCHHHHHHHHHHHH
Q 003891 142 KVKLEGDINQGVAYYKKALYYNWHYADAMYN-------LGVAYGEMLKFDMAIVFYELAFHFNP--HCAEACNNLGVIYK 212 (788)
Q Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~ 212 (788)
.|.-.+|.+++.+-+...|........ ...-......+..-.+.|-.+....| .+++++..||.+|.
T Consensus 366 ----eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ 441 (579)
T KOG1125|consen 366 ----EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYN 441 (579)
T ss_pred ----hhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh
Confidence 568899999999999887654321110 00000111123445566777777777 68999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 213 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 292 (788)
Q Consensus 213 ~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 292 (788)
-.|+|++|+.||+.||..+|++...|+.||-.+....+.++|+..|++|+++.|.+..++++||..+..+|.|++|.++|
T Consensus 442 ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 442 LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCC
Q 003891 293 EQCLKIDPDS 302 (788)
Q Consensus 293 ~~al~l~p~~ 302 (788)
-.||.+.+..
T Consensus 522 L~AL~mq~ks 531 (579)
T KOG1125|consen 522 LEALSMQRKS 531 (579)
T ss_pred HHHHHhhhcc
Confidence 9999997763
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.5e-16 Score=169.84 Aligned_cols=295 Identities=13% Similarity=-0.015 Sum_probs=233.5
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-HHHH
Q 003891 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL-GVVYSELMQYDTALGCYEKAALERPMYAEAY-CNMG 99 (788)
Q Consensus 22 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-g~~~~~~g~~~~A~~~~~kal~~~p~~~~~~-~~la 99 (788)
..+.-.+..|......|++++|.+...+.-+..+. +..++.+ +......|++++|..+++++.+.+|++.... ...+
T Consensus 82 ~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a 160 (398)
T PRK10747 82 RRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRV 160 (398)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 35556677888889999999999888876654433 4444444 6666999999999999999999999875443 4559
Q ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHH--------
Q 003891 100 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY-------- 171 (788)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-------- 171 (788)
.++...|++++|+..++++.+..|+++.+...++.++ ...|++++|++.+.+..+....+.....
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~-------~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~ 233 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAY-------IRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWI 233 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999987666555554 4467999999999999988766544222
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 003891 172 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 251 (788)
Q Consensus 172 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 251 (788)
.+........+-+...+.++..-+..|+++.+...++..+...|+.++|.+.++++++. +.++.....++.+ ..++.
T Consensus 234 ~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~ 310 (398)
T PRK10747 234 GLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNP 310 (398)
T ss_pred HHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCCh
Confidence 22222223334455555555555556789999999999999999999999999999994 4456555444444 44999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHH
Q 003891 252 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 330 (788)
Q Consensus 252 ~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~ 330 (788)
+++++.+++.++.+|+++..+..+|.++...|++++|.++|+++++..|++... ..++..+...|+.+++.+.+++
T Consensus 311 ~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~---~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 311 EQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDY---AWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987652 3577888889998888776654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-17 Score=170.41 Aligned_cols=284 Identities=19% Similarity=0.190 Sum_probs=243.5
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003891 21 ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 100 (788)
Q Consensus 21 ~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~ 100 (788)
...+.-....|..++++.+|.+|+..|..+++..|+++..|.+.+.+++..++|++|....++.++++|.....+...+.
T Consensus 46 ~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~ 125 (486)
T KOG0550|consen 46 AQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQ 125 (486)
T ss_pred HHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhh
Confidence 34566788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHH------------hhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHH
Q 003891 101 IYKNRGDLESAIACYERCL------------AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 168 (788)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al------------~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 168 (788)
++...++..+|.+.++..- .+.|.+... -.....-..-+.++...+++++|...--..+++++.+.+
T Consensus 126 c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~-pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~ 204 (486)
T KOG0550|consen 126 CHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSRE-PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAE 204 (486)
T ss_pred hhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCC-chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhH
Confidence 9999999888887776221 001111000 000111122244555678999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA------------EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-- 234 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-- 234 (788)
+++..|.+++..++.+.|+..|++++.++|+.. ..+..-|+-.++.|++.+|.++|..+|.++|++
T Consensus 205 al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~ 284 (486)
T KOG0550|consen 205 ALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK 284 (486)
T ss_pred HHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc
Confidence 999999999999999999999999999998753 355667888999999999999999999999987
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhH
Q 003891 235 --SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 235 --~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
...|.+++.+...+|+..+|+.-.+.++++++....++...|.|+..++++++|++.|+++++...+ ...+
T Consensus 285 ~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r 357 (486)
T KOG0550|consen 285 TNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIR 357 (486)
T ss_pred hhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchH
Confidence 4478999999999999999999999999999999999999999999999999999999999998776 4433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-16 Score=161.41 Aligned_cols=201 Identities=25% Similarity=0.282 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 003891 58 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 137 (788)
Q Consensus 58 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 137 (788)
...++.+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|++.++++++..|++
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------------ 98 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN------------ 98 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------------
Confidence 45555666666666666666666666666555555555555555555555555555555555555554
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcC
Q 003891 138 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--PHCAEACNNLGVIYKDRD 215 (788)
Q Consensus 138 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g 215 (788)
...+..+|.++...|++++|++.+++++... +.....+..+|.++...|
T Consensus 99 -----------------------------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (234)
T TIGR02521 99 -----------------------------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAG 149 (234)
T ss_pred -----------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcC
Confidence 4444444555555555555555555555432 334455666666666666
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 216 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 295 (788)
Q Consensus 216 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 295 (788)
++++|...++++++.+|++...+..+|.++...|++++|+.++++++...|.++..+..++.++...|+.++|..+.+.+
T Consensus 150 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 150 DFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66666666666666666666666666777777777777777777766666666666666667777777777776666665
Q ss_pred HhhC
Q 003891 296 LKID 299 (788)
Q Consensus 296 l~l~ 299 (788)
....
T Consensus 230 ~~~~ 233 (234)
T TIGR02521 230 QKLF 233 (234)
T ss_pred HhhC
Confidence 5443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.8e-16 Score=164.59 Aligned_cols=291 Identities=15% Similarity=0.074 Sum_probs=264.0
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 82 (788)
Q Consensus 3 i~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 82 (788)
..++++++...|..... +...+..+...|+...|..++.++++.+|++.+.|+..-.+.....+++.|..+|.
T Consensus 570 ~Allqkav~~~pkae~l-------wlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~lla 642 (913)
T KOG0495|consen 570 EALLQKAVEQCPKAEIL-------WLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLA 642 (913)
T ss_pred HHHHHHHHHhCCcchhH-------HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHH
Confidence 46789999999987666 44556667778999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh
Q 003891 83 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 162 (788)
Q Consensus 83 kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~ 162 (788)
++....|. ..+|+.-+.+...+++.++|+++++++++..|.....+ ..+|+++..+++.+.|.+.|...++.
T Consensus 643 kar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~-------lmlGQi~e~~~~ie~aR~aY~~G~k~ 714 (913)
T KOG0495|consen 643 KARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLW-------LMLGQIEEQMENIEMAREAYLQGTKK 714 (913)
T ss_pred HHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHH-------HHHhHHHHHHHHHHHHHHHHHhcccc
Confidence 99987765 78899999999999999999999999999999987554 45566666677999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--------
Q 003891 163 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-------- 234 (788)
Q Consensus 163 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-------- 234 (788)
.|.....|..++.+-...|+.-.|...++++.-.+|++...|......-.+.|+.++|...+.+|++..|.+
T Consensus 715 cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI 794 (913)
T KOG0495|consen 715 CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAI 794 (913)
T ss_pred CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred ----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 235 ----------------------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 292 (788)
Q Consensus 235 ----------------------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 292 (788)
+.++...|.++....++++|.++|+++++.+|++.++|..+-..+...|.-++-.+.|
T Consensus 795 ~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~ 874 (913)
T KOG0495|consen 795 WLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVL 874 (913)
T ss_pred HhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHH
Confidence 3467788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCChhhHHh
Q 003891 293 EQCLKIDPDSRNAGQN 308 (788)
Q Consensus 293 ~~al~l~p~~~~a~~~ 308 (788)
.++....|.+-..|..
T Consensus 875 ~~c~~~EP~hG~~W~a 890 (913)
T KOG0495|consen 875 KKCETAEPTHGELWQA 890 (913)
T ss_pred HHHhccCCCCCcHHHH
Confidence 9999999998776654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-16 Score=160.36 Aligned_cols=201 Identities=18% Similarity=0.177 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003891 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 101 (788)
Q Consensus 22 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~ 101 (788)
..+..+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|++.++++++..|.+...+..+|.+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003891 102 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 181 (788)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 181 (788)
+...|++++|++.++++++..+... ....+..+|.++...|++++|...++++++.+|++...+..+|.++...|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQ-----PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHcccHHHHHHHHHHHHhcccccc-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcC
Confidence 9999999999999999987532110 01122233444444445555555555555555555444555555555555
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 182 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 227 (788)
Q Consensus 182 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 227 (788)
++++|+..++++++..|.+...+..++.++...|+.++|..+.+.+
T Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 184 QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555555555544444444444444444444444444444444433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-16 Score=150.61 Aligned_cols=205 Identities=21% Similarity=0.197 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003891 93 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 172 (788)
Q Consensus 93 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 172 (788)
.+...||.-|+..|++..|.+.++++++.+|++..++..++.+|.. .|+.+.|.+.|+++++++|++.+++++
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~-------~Ge~~~A~e~YrkAlsl~p~~GdVLNN 108 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQK-------LGENDLADESYRKALSLAPNNGDVLNN 108 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-------cCChhhHHHHHHHHHhcCCCccchhhh
Confidence 4556666666666666666666666666666665554444433333 446666666666666677777777777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 003891 173 LGVAYGEMLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 250 (788)
Q Consensus 173 la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 250 (788)
.|..++.+|++++|...|++++.. .+.....+.|+|.|..+.|+++.|.++|+++++.+|+++.....++..+++.|+
T Consensus 109 YG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 109 YGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD 188 (250)
T ss_pred hhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc
Confidence 777777777777777777777763 344566777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 003891 251 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304 (788)
Q Consensus 251 ~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 304 (788)
|-.|..++++.....+-..+.+.....+-...|+-+.|-.+=.+..+..|...+
T Consensus 189 y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 189 YAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred chHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 777777777777776666777777777777777777777777777777776554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-15 Score=175.76 Aligned_cols=301 Identities=14% Similarity=0.068 Sum_probs=191.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 106 (788)
.+..+...+++|+++.|+..|+++++.+|+++.....+..++...|+.++|+.++++++...|.....+..+|.++..+|
T Consensus 37 ~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 37 QYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 55566666777777777777777777777764332355555555555555555555555222233333333344555555
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH--------------------------hhhhhhhcCCHHHHHHHHHHHH
Q 003891 107 DLESAIACYERCLAVSPNFEIAKNNMAIALTD--------------------------LGTKVKLEGDINQGVAYYKKAL 160 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~--------------------------lg~~~~~~g~~~~A~~~~~~al 160 (788)
++++|++.|+++++.+|+++..+..++.++.. ++.++...++..+|++.+++++
T Consensus 117 dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 117 RWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 55555555555555555555444433322211 2223333567767999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHH------------------------------------------------HHHHHHH
Q 003891 161 YYNWHYADAMYNLGVAYGEMLKFDM------------------------------------------------AIVFYEL 192 (788)
Q Consensus 161 ~~~p~~~~~~~~la~~~~~~g~~~~------------------------------------------------A~~~~~~ 192 (788)
+.+|++.+.+..+..++...|-... |+..+++
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 9999988876666555544443322 2233333
Q ss_pred HHhc---CCC---------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 193 AFHF---NPH---------------------------------------CAEACNNLGVIYKDRDNLDKAVECYQMALSI 230 (788)
Q Consensus 193 al~~---~p~---------------------------------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 230 (788)
.+.. .|. -..+....|..|...++.++|+.+|++++..
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 3321 121 1223344678888888899999999988776
Q ss_pred CC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHcCCHHHHH
Q 003891 231 KP------NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP---------------TYAEAYNNLGVLYRDAGSISLAI 289 (788)
Q Consensus 231 ~p------~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p---------------~~~~~~~~la~~~~~~g~~~eA~ 289 (788)
.+ ........|...|...+++++|..++++..+..| +..++...++.++...|++.+|.
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 52 2233356788888999999999999999887443 33567778899999999999999
Q ss_pred HHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHH
Q 003891 290 DAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 329 (788)
Q Consensus 290 ~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~ 329 (788)
+.+++.+...|.|...... .+..+...|...++.+..+
T Consensus 437 ~~le~l~~~aP~n~~l~~~--~A~v~~~Rg~p~~A~~~~k 474 (822)
T PRK14574 437 KKLEDLSSTAPANQNLRIA--LASIYLARDLPRKAEQELK 474 (822)
T ss_pred HHHHHHHHhCCCCHHHHHH--HHHHHHhcCCHHHHHHHHH
Confidence 9999999999998887654 5666777777766665543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-16 Score=149.63 Aligned_cols=211 Identities=22% Similarity=0.176 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003891 20 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 99 (788)
Q Consensus 20 ~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la 99 (788)
....+.+...+|..|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++++.|
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG 110 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhh
Confidence 34556777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 100 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 179 (788)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 179 (788)
..++.+|++++|...|++|+.. |... ..+..+.++|.+..+.|+++.|.++|+++++.+|+.+.....++..++.
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~-P~Y~----~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~ 185 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALAD-PAYG----EPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYK 185 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhC-CCCC----CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh
Confidence 8888888888888888888753 3322 1123344444444445555555555555555555555555555555555
Q ss_pred cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 003891 180 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 235 (788)
Q Consensus 180 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 235 (788)
.|++-.|..++++.....+...+.+.....+-...|+-+.+-++=.+.-...|...
T Consensus 186 ~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 186 AGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred cccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 55555555555555544444444444444444555555555444444444444443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-16 Score=155.61 Aligned_cols=262 Identities=18% Similarity=0.224 Sum_probs=181.6
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|+..|..|++.+|++-.+ ++..|..|+..|+-..|+.-+.+++++.|+...+....|.+++++|++++|..-|
T Consensus 57 ALt~yHaAve~dp~~Y~a-------ifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF 129 (504)
T KOG0624|consen 57 ALTHYHAAVEGDPNNYQA-------IFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADF 129 (504)
T ss_pred HHHHHHHHHcCCchhHHH-------HHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHH
Confidence 678899999999998887 5555666666677777777777777777777777777777777777777777777
Q ss_pred HHHHHhCCCCH---HHH------------HHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhc
Q 003891 82 EKAALERPMYA---EAY------------CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 146 (788)
Q Consensus 82 ~kal~~~p~~~---~~~------------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~ 146 (788)
.++++.+|++. +++ ......+...|++..|+++....+++.|=+...+. ..+.+|...
T Consensus 130 ~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~-------~Rakc~i~~ 202 (504)
T KOG0624|consen 130 DQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ-------ARAKCYIAE 202 (504)
T ss_pred HHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH-------HHHHHHHhc
Confidence 77777666431 111 12223344456666666666666666665443322 233344445
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH-----------------------
Q 003891 147 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA----------------------- 203 (788)
Q Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~----------------------- 203 (788)
|+...|+.-++.+-++..++.+.++.++.+++..|+.+.++...+++++++|+.-..
T Consensus 203 ~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~ 282 (504)
T KOG0624|consen 203 GEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEE 282 (504)
T ss_pred CcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566666666666666666666666666666666666666666666666666553221
Q ss_pred ---------------------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 204 ---------------------------CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 256 (788)
Q Consensus 204 ---------------------------~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 256 (788)
...+..|+..-+++.+|+..+.++++.+|++.+++...+.+|.....|+.|+.
T Consensus 283 ~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~ 362 (504)
T KOG0624|consen 283 KHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIH 362 (504)
T ss_pred hhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHH
Confidence 12245566667889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHH
Q 003891 257 MIEKAIAANPTYAEAYNNLGV 277 (788)
Q Consensus 257 ~l~kal~~~p~~~~~~~~la~ 277 (788)
-|++|.+.++++..+.-.+-.
T Consensus 363 dye~A~e~n~sn~~~reGle~ 383 (504)
T KOG0624|consen 363 DYEKALELNESNTRAREGLER 383 (504)
T ss_pred HHHHHHhcCcccHHHHHHHHH
Confidence 999999999998776554433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.7e-16 Score=160.09 Aligned_cols=248 Identities=21% Similarity=0.179 Sum_probs=228.1
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 003891 37 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 116 (788)
Q Consensus 37 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 116 (788)
-.++.+|.++...++..+.-++.++.+.|.+.+..|++++|.+.|++++..+....++++++|..+..+|++++|+++|-
T Consensus 469 gk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~ 548 (840)
T KOG2003|consen 469 GKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFL 548 (840)
T ss_pred ccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 003891 117 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 196 (788)
Q Consensus 117 ~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 196 (788)
+.-.+--++ +.++.+++.+|....+..+|++++.++..+-|+++.++..+|.+|-+.|+-.+|.+++-.....
T Consensus 549 klh~il~nn-------~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry 621 (840)
T KOG2003|consen 549 KLHAILLNN-------AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY 621 (840)
T ss_pred HHHHHHHhh-------HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc
Confidence 886654444 5566777777777889999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003891 197 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 276 (788)
Q Consensus 197 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la 276 (788)
.|.+.+..-.+|..|....-+++|+.+|+++--+.|+.......++.|+.+.|+|.+|.+.|+..-...|.+.+.+..|.
T Consensus 622 fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflv 701 (840)
T KOG2003|consen 622 FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLV 701 (840)
T ss_pred cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHcCCHHHHHHHH
Q 003891 277 VLYRDAGSISLAIDAY 292 (788)
Q Consensus 277 ~~~~~~g~~~eA~~~~ 292 (788)
.+.-.+|-. +|.++-
T Consensus 702 ri~~dlgl~-d~key~ 716 (840)
T KOG2003|consen 702 RIAGDLGLK-DAKEYA 716 (840)
T ss_pred HHhccccch-hHHHHH
Confidence 888887743 344443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.5e-16 Score=170.35 Aligned_cols=296 Identities=16% Similarity=0.108 Sum_probs=247.7
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-DPHYAPAYYNLGVVYSELMQYDTALGC 80 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~ 80 (788)
+++.++++++.+|.|+.+ .+.++..|..+++.+.|.+..+++++. ...++.+|..++.++...+++.+|+..
T Consensus 463 slqale~av~~d~~dp~~-------if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 463 SLQALEEAVQFDPTDPLV-------IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHhcCCCCchH-------HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 578899999999999877 777788888889999999999999999 455788999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHH--HHHHHHhhhhhhhcCCHHHHHHHHHH
Q 003891 81 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM--AIALTDLGTKVKLEGDINQGVAYYKK 158 (788)
Q Consensus 81 ~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--a~~l~~lg~~~~~~g~~~~A~~~~~~ 158 (788)
.+.+++..|+|.........+-...++.++|+..+...+.+-.........+ +......+.......+..+|++.+++
T Consensus 536 vd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ 615 (799)
T KOG4162|consen 536 VDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRY 615 (799)
T ss_pred HHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHH
Confidence 9999999998887777777788888999999999888887755332222211 12222223333344556666666665
Q ss_pred HHHhC-------------C--------CC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003891 159 ALYYN-------------W--------HY-----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 212 (788)
Q Consensus 159 al~~~-------------p--------~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 212 (788)
+...- | +. ...|...+..+...++.++|..++.++-++.|.....|+..|.++.
T Consensus 616 ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 616 LSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLE 695 (799)
T ss_pred HHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHH
Confidence 54321 1 11 2356788899999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 213 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE--MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 290 (788)
Q Consensus 213 ~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~--~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~ 290 (788)
.+|++++|...|..++.++|++..+...+|.++.+.|+..-|.. .+..+++++|.++++|+.+|.++.++|+.++|.+
T Consensus 696 ~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred HHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 99999999999999999999999999999999999999888888 9999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChh
Q 003891 291 AYEQCLKIDPDSRN 304 (788)
Q Consensus 291 ~~~~al~l~p~~~~ 304 (788)
+|+-++++.+.++-
T Consensus 776 cf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 776 CFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHhhccCCCc
Confidence 99999999998764
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.9e-15 Score=145.57 Aligned_cols=267 Identities=20% Similarity=0.204 Sum_probs=232.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHH
Q 003891 29 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNMGVIYK 103 (788)
Q Consensus 29 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~-----~~~~~~la~~~~ 103 (788)
-.|.-+.-..+.++|++.|.++++.+|...++...||+.+...|..+.|+..-+..++ .|+. ..+...||.-|+
T Consensus 40 v~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym 118 (389)
T COG2956 40 VKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYM 118 (389)
T ss_pred HhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHH
Confidence 3566777789999999999999999999999999999999999999999998776654 4543 458899999999
Q ss_pred HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHH
Q 003891 104 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA-----DAMYNLGVAYG 178 (788)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~ 178 (788)
..|-++.|...|....+...--. .++..+-.+|....++++|++..++..++.++.. ..+..++..+.
T Consensus 119 ~aGl~DRAE~~f~~L~de~efa~-------~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 119 AAGLLDRAEDIFNQLVDEGEFAE-------GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HhhhhhHHHHHHHHHhcchhhhH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 99999999999999876432222 3455666778888999999999999999987753 46788999999
Q ss_pred HcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 003891 179 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKMDAAAEM 257 (788)
Q Consensus 179 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~ 257 (788)
...+.+.|+..++++++.+|++..+-..+|.++...|+|++|++.++.+++.+|+. +++...|..+|..+|+.++.+..
T Consensus 192 ~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 192 ASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987 56888999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 003891 258 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304 (788)
Q Consensus 258 l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 304 (788)
+.++.+..+. +++-..++.+-....-.+.|..++.+-+...|+-..
T Consensus 272 L~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~g 317 (389)
T COG2956 272 LRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRG 317 (389)
T ss_pred HHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHH
Confidence 9999998876 556677788888888889999999999999997443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.5e-16 Score=171.51 Aligned_cols=244 Identities=23% Similarity=0.312 Sum_probs=205.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-
Q 003891 54 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN- 124 (788)
Q Consensus 54 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~- 124 (788)
.|.-..+...++..|..+|+|++|+..++++++. .|.-......+|.+|..++++++|+..|++++.+...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4666777888999999999999999999999987 4555566677999999999999999999999987431
Q ss_pred cHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 003891 125 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--------HYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 196 (788)
Q Consensus 125 ~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 196 (788)
....+...+.++.+|+..|...|++++|..++++++++.. +-...+.+++.++..++++++|+.++++++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 1111224577888999999999999999999999998732 23446788999999999999999999999986
Q ss_pred C--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 197 N--------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--------PNFSQSLNNLGVVYTVQGKMDAAAEMIEK 260 (788)
Q Consensus 197 ~--------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~eA~~~l~k 260 (788)
. +.-+..+.++|.+|..+|++++|.++|++++++. +.....+.++|..|.+.+++.+|...|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 2 2346789999999999999999999999999874 23355889999999999999999999999
Q ss_pred HHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003891 261 AIAA-------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 297 (788)
Q Consensus 261 al~~-------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 297 (788)
+..+ .|+....+.+|+.+|..+|++++|+++.++++.
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 8876 344467899999999999999999999999874
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=5e-16 Score=163.59 Aligned_cols=206 Identities=12% Similarity=0.046 Sum_probs=125.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCH
Q 003891 71 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 149 (788)
Q Consensus 71 ~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~ 149 (788)
.+++++|+..+.++++++|.+..+|...+.++...| ++++++..++++++.+|++..+|...+.++..++. ..+
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~-----~~~ 124 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP-----DAA 124 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc-----hhh
Confidence 344555555555555555555555555555555555 35555666666666666555555555444444331 112
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCH----HHHHH
Q 003891 150 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR---DNL----DKAVE 222 (788)
Q Consensus 150 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~----~eA~~ 222 (788)
++++.+++++++.+|++..+|...+.++...|+++++++.+.++++.+|.+..+|+..+.++... |.+ ++++.
T Consensus 125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666665544 222 35666
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 223 CYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 281 (788)
Q Consensus 223 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~ 281 (788)
+..+++..+|++..+|..++.++.. .++..+|++.+.+++...|+++.++..|+.+|..
T Consensus 205 y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 6667777777777777777777666 3445667777777777777777777777777764
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.3e-16 Score=169.51 Aligned_cols=241 Identities=25% Similarity=0.347 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-------- 87 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~-------- 87 (788)
..+...++..|..+|+|++|+..++++++. .|.-......+|.+|..++++.+|+..|++++.+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 444666999999999999999999999998 4555556667999999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCC--
Q 003891 88 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF-EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW-- 164 (788)
Q Consensus 88 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p-- 164 (788)
+|..+.++.+||.+|...|++++|..++++++++.... ......++..+..++.++..++++++|+.++++++++..
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 44456789999999999999999999999999885441 112334566778888889999999999999999987632
Q ss_pred ------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 165 ------HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 230 (788)
Q Consensus 165 ------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 230 (788)
.-+..+.++|.+|..+|++++|.++|++++.+. +.....+.++|..|.+.+++.+|...|.++..+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 335678999999999999999999999999873 233568899999999999999999999998876
Q ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003891 231 -------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 264 (788)
Q Consensus 231 -------~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~ 264 (788)
.|+....+.+|+.+|..+|++++|+++.++++..
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3455668999999999999999999999999854
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.1e-15 Score=157.60 Aligned_cols=212 Identities=13% Similarity=0.093 Sum_probs=191.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Q 003891 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM-QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 108 (788)
Q Consensus 30 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~ 108 (788)
+-.++...+.+++|+..+.++++++|++..+|...+.++..+| ++++++..++++++.+|++..+|...+.++...|+.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCch
Confidence 3344667789999999999999999999999999999999998 689999999999999999999999999999999874
Q ss_pred --HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCh
Q 003891 109 --ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM---LKF 183 (788)
Q Consensus 109 --~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~ 183 (788)
++++.+++++++.+|++..+|...+.++..++ +++++++++.++++.+|.+..+|..++.++... |.+
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~-------~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLG-------GWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 78899999999999999998888888877765 799999999999999999999999999998776 333
Q ss_pred ----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 003891 184 ----DMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 248 (788)
Q Consensus 184 ----~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 248 (788)
++++++..+++..+|++..+|+.++.++.. .++..+|+..+.++++.+|.+..++..|+.+|...
T Consensus 196 ~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred cccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 578888999999999999999999999988 45678899999999999999999999999999763
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.5e-15 Score=145.74 Aligned_cols=259 Identities=20% Similarity=0.200 Sum_probs=230.3
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNLGVVYSELMQYDT 76 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~ 76 (788)
|++.|...++.+|+..++ ...+|+.+...|..+.|+.+-+..++ .|+. ..+...||.-|+..|-++.
T Consensus 54 AvdlF~e~l~~d~~t~e~-------~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 54 AVDLFLEMLQEDPETFEA-------HLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred HHHHHHHHHhcCchhhHH-------HHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 788999999999998887 77888889999999999998877665 4543 5588999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHH
Q 003891 77 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 156 (788)
Q Consensus 77 A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~ 156 (788)
|...|....+....-..+...|..+|....+|++|++..++..++.++.. ...++..|..++..+....+.+.|...+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~--~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY--RVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc--hhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 99999999887767788999999999999999999999999999988764 4577899999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 003891 157 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 235 (788)
Q Consensus 157 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 235 (788)
.++++.+|+...+-..+|.++...|+|++|++.++.+++.+|+. +++...+..+|..+|+.++.+..+.++.+..+. .
T Consensus 204 ~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~ 282 (389)
T COG2956 204 KKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-A 282 (389)
T ss_pred HHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-c
Confidence 99999999999999999999999999999999999999999986 678889999999999999999999999998776 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 003891 236 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 271 (788)
Q Consensus 236 ~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~ 271 (788)
.+...++..-....-.+.|..++.+-+...|+.-..
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf 318 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGF 318 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHH
Confidence 455566677777777889999999999999985433
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-14 Score=147.81 Aligned_cols=287 Identities=17% Similarity=0.108 Sum_probs=244.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Q 003891 29 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 108 (788)
Q Consensus 29 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~ 108 (788)
..+.++.....+.-+..++-+-...-|+|...+..+|.+++..|++++|+..|+++..++|......-..|.++...|++
T Consensus 203 a~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~ 282 (564)
T KOG1174|consen 203 ALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGC 282 (564)
T ss_pred HHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCH
Confidence 34555555556666777777777888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 003891 109 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 188 (788)
Q Consensus 109 ~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 188 (788)
+.-.......+.+.......|+--+. .....+++..|+.+-++++..+|.+..++...|.++...|+.++|+-
T Consensus 283 e~~~~L~~~Lf~~~~~ta~~wfV~~~-------~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~I 355 (564)
T KOG1174|consen 283 EQDSALMDYLFAKVKYTASHWFVHAQ-------LLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVI 355 (564)
T ss_pred hhHHHHHHHHHhhhhcchhhhhhhhh-------hhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHH
Confidence 99888888888877655544443333 33346799999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHHhCC
Q 003891 189 FYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG-VVYT-VQGKMDAAAEMIEKAIAANP 266 (788)
Q Consensus 189 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la-~~~~-~~g~~~eA~~~l~kal~~~p 266 (788)
.|+.+..+.|...+.|..+-.+|...|++.||...-+.+++..|.++.++..+| .++. .-.--++|.+++++++.+.|
T Consensus 356 aFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P 435 (564)
T KOG1174|consen 356 AFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINP 435 (564)
T ss_pred HHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCC
Confidence 999999999999999999999999999999999999999999999999998886 4443 34456899999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHH
Q 003891 267 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLF 325 (788)
Q Consensus 267 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~ 325 (788)
.+..+-..++.++...|.++.++..+++++...|+..- ...++..+......+++.
T Consensus 436 ~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~L---H~~Lgd~~~A~Ne~Q~am 491 (564)
T KOG1174|consen 436 IYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNL---HNHLGDIMRAQNEPQKAM 491 (564)
T ss_pred ccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHH---HHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999887532 233444444444444443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.3e-14 Score=158.45 Aligned_cols=294 Identities=21% Similarity=0.241 Sum_probs=248.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 106 (788)
+...|+.++..|++++|..++.++++++|.++.+|+.||.+|.++|+.+++....-.|-.++|++.+.|..++....++|
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence 55667788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcC
Q 003891 107 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY-----ADAMYNLGVAYGEML 181 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g 181 (788)
++++|.-+|.+|++.+|.+.......+..+. +.|+...|...|.+++...|.. .+.....+..+...+
T Consensus 222 ~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~-------~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 222 NINQARYCYSRAIQANPSNWELIYERSSLYQ-------KTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHH-------HhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998765555555444 4669999999999999999832 123445577888888
Q ss_pred ChHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------------h-------
Q 003891 182 KFDMAIVFYELAFHFN--PHCAEACNNLGVIYKDRDNLDKAVECYQMALS----------------------I------- 230 (788)
Q Consensus 182 ~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~----------------------~------- 230 (788)
+-+.|++.++.++... ....+.++.++.++.....++.|......... .
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 8899999999999842 22345666777888888888877766654433 0
Q ss_pred --------------------------------C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Q 003891 231 --------------------------------K---PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT-YAEAYNN 274 (788)
Q Consensus 231 --------------------------------~---p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~-~~~~~~~ 274 (788)
+ .+..+.+..++..|...|++.+|+.++..+....+. +...|+.
T Consensus 375 s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 375 SYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred CccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 0 123457889999999999999999999999887653 4678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHH
Q 003891 275 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 329 (788)
Q Consensus 275 la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~ 329 (788)
+|.||..+|.+++|+++|++++.+.|++.+++.. ++..+...|+.+++++...
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~--Lasl~~~~g~~EkalEtL~ 507 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLILAPDNLDARIT--LASLYQQLGNHEKALETLE 507 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhh--HHHHHHhcCCHHHHHHHHh
Confidence 9999999999999999999999999999999887 6777888999988776543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.2e-13 Score=162.77 Aligned_cols=291 Identities=15% Similarity=0.106 Sum_probs=181.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERP-MYAEAYCNMGVIYKN 104 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p-~~~~~~~~la~~~~~ 104 (788)
|..+-..|.+.|++++|.++|+++.+... .+...|..+...|.+.|++++|++.|+++.+..- .+...|..+...|.+
T Consensus 475 ynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k 554 (1060)
T PLN03218 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 44455556666777777777777665532 2566666677777777777777777776655321 135566667777777
Q ss_pred CCCHHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Q 003891 105 RGDLESAIACYERCLAV----SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGE 179 (788)
Q Consensus 105 ~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 179 (788)
.|++++|.+.|+++... .|+. ..+..+-..|.+.|++++|.+.|+++.+.+ +.+...|..+...|.+
T Consensus 555 ~G~~deA~~lf~eM~~~~~gi~PD~--------vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k 626 (1060)
T PLN03218 555 SGAVDRAFDVLAEMKAETHPIDPDH--------ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ 626 (1060)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCcH--------HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 77777777777766542 3331 123333344555667777777777776654 3455667777777777
Q ss_pred cCChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 180 MLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAE 256 (788)
Q Consensus 180 ~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~ 256 (788)
.|++++|++.|++..+. .| +...|..+...|.+.|++++|.++++++.+.. +.+...+..+...|.+.|++++|.+
T Consensus 627 ~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~ 705 (1060)
T PLN03218 627 KGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALE 705 (1060)
T ss_pred cCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 77777777777776654 33 35566677777777777777777777776653 3345667777777777777777777
Q ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCChhhHHhHHHHhhhccCCCchHHHHHHHH
Q 003891 257 MIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI--DPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 330 (788)
Q Consensus 257 ~l~kal~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l--~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~ 330 (788)
.|++..+. .| +...|..+...|.+.|++++|.+.|++..+. .|+. ..+.. +...+...|+.+++.+.+.+
T Consensus 706 lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~-~Ty~s--LL~a~~k~G~le~A~~l~~~ 779 (1060)
T PLN03218 706 LYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT-ITYSI--LLVASERKDDADVGLDLLSQ 779 (1060)
T ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH-HHHHH--HHHHHHHCCCHHHHHHHHHH
Confidence 77776543 33 3556777777777777777777777766543 3332 12222 22345556666555554443
|
|
| >PLN02949 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-14 Score=159.88 Aligned_cols=177 Identities=14% Similarity=0.111 Sum_probs=143.1
Q ss_pred CeEEEecCCC--CcCCHHHHHHHHHHHhH----cCCcEEEEecCCCC--CHHHHHHHHHHHHHcCCCCCcEEEcCCcCCc
Q 003891 526 FITFGSFNNL--AKITPKVLQVWARILCA----VPNSRLVVKCKPFC--CDSVRHRFLSTLEQLGLESLRVDLLPLILLN 597 (788)
Q Consensus 526 ~~~f~~~~~~--~K~~~~~~~~~~~il~~----~p~~~l~l~~~~~~--~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~ 597 (788)
..+|.+++++ .|.++..+++|+++.++ .|+.+|+|+|++.. +....+.+++.++++|++ ++|.|.|.++ .
T Consensus 268 ~~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~-~~V~f~g~v~-~ 345 (463)
T PLN02949 268 PPYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLD-GDVEFHKNVS-Y 345 (463)
T ss_pred CCEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCC-CcEEEeCCCC-H
Confidence 3457777865 89999999999998764 47899999997632 234557889999999998 9999999987 6
Q ss_pred HHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhH---HHhh--hCCcccccCCHHHHHHHHHH
Q 003891 598 HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS---LLTK--VGLKHLIAKNEDEYVQLALQ 671 (788)
Q Consensus 598 ~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~---~l~~--~gl~~~ia~~~~~y~~~a~~ 671 (788)
++....|+.+|+++.|+-+ +.|.+.+|||++|+|||+.. .|+- +... -|..++.+.|++++.+...+
T Consensus 346 ~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~-------~gGp~~eIV~~~~~g~tG~l~~~~~~la~ai~~ 418 (463)
T PLN02949 346 RDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHN-------SAGPKMDIVLDEDGQQTGFLATTVEEYADAILE 418 (463)
T ss_pred HHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeC-------CCCCcceeeecCCCCcccccCCCHHHHHHHHHH
Confidence 8888999999999988854 77999999999999999843 2211 1110 14556777899999999999
Q ss_pred Hhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 003891 672 LAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 714 (788)
Q Consensus 672 l~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 714 (788)
+.+ +++.+++|+++.+++.. . |+.+.|+++++++|+.+..
T Consensus 419 ll~~~~~~r~~m~~~ar~~~~-~--FS~e~~~~~~~~~i~~l~~ 459 (463)
T PLN02949 419 VLRMRETERLEIAAAARKRAN-R--FSEQRFNEDFKDAIRPILN 459 (463)
T ss_pred HHhCCHHHHHHHHHHHHHHHH-H--cCHHHHHHHHHHHHHHHHh
Confidence 998 67888999999998863 2 9999999999999998765
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-15 Score=153.26 Aligned_cols=260 Identities=15% Similarity=0.122 Sum_probs=218.9
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|++.|..|++..|++... |...+-.+...++|++|...+++.++++|.....+...+.++..+++..+|...+
T Consensus 68 al~~yt~Ai~~~pd~a~y-------y~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~ 140 (486)
T KOG0550|consen 68 ALKNYTFAIDMCPDNASY-------YSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKL 140 (486)
T ss_pred HHHHHHHHHHhCccchhh-------hchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHh
Confidence 788999999999999777 4445555566689999999999999999999999999999999998888888666
Q ss_pred HHHH------------Hh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhh
Q 003891 82 EKAA------------LE------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 143 (788)
Q Consensus 82 ~kal------------~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~ 143 (788)
+..- .+ .|....+-...+.|+...|++++|...--..+++++.+.++.+. .|.++
T Consensus 141 ~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~v-------rg~~~ 213 (486)
T KOG0550|consen 141 KSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYV-------RGLCL 213 (486)
T ss_pred hhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHh-------ccccc
Confidence 5221 01 13334566778899999999999999999999999998765544 44555
Q ss_pred hhcCCHHHHHHHHHHHHHhCCCCHH------------HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----HHHHHHH
Q 003891 144 KLEGDINQGVAYYKKALYYNWHYAD------------AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNL 207 (788)
Q Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l 207 (788)
+...+.+.|+..|++++.++|+... .+..-|+-.++.|++.+|.+.|..++.++|++ ...|.+.
T Consensus 214 yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 214 YYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred ccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 5567999999999999999998654 46677888999999999999999999999985 6688999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003891 208 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 276 (788)
Q Consensus 208 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la 276 (788)
+.+..++|+..+|+...+.++++++....++...|.++..++++++|.+.|+++++...+ .+....+.
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~ 361 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLR 361 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998766 44444433
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-14 Score=161.82 Aligned_cols=306 Identities=20% Similarity=0.207 Sum_probs=245.2
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHH-----------------------------HHHHHHHHcCChHHHHHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLT-----------------------------DLGTSLKLAGNTQDGIQKYYEALK 52 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~-----------------------------~lg~~~~~~g~~~~A~~~~~~al~ 52 (788)
|.++|++|+++++.+.++....+..+. .+|..|...++...|+..|+.++.
T Consensus 511 A~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR 590 (1238)
T KOG1127|consen 511 AKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALR 590 (1238)
T ss_pred HHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhc
Confidence 778999999999999988877776643 256677788899999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 003891 53 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 132 (788)
Q Consensus 53 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 132 (788)
.+|++..+|..+|.+|...|.|..|++.|.++..++|.+....+..+.+....|+|.+|+..++..+............+
T Consensus 591 ~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gL 670 (1238)
T KOG1127|consen 591 TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGL 670 (1238)
T ss_pred CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877777777788
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH-------------------H----cC
Q 003891 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYN--------WHYADAMYNLGVAYG-------------------E----ML 181 (788)
Q Consensus 133 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~-------------------~----~g 181 (788)
+.++..++..+...|-..+|..+++++++.. -++.-.|..+|.+.. . ++
T Consensus 671 aE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~ 750 (1238)
T KOG1127|consen 671 AESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTG 750 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 8888888888888888888888887776541 122222222222211 1 11
Q ss_pred Ch---H---HHHHHHHHHHhcCCCCHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003891 182 KF---D---MAIVFYELAFHFNPHCAEACNNLGVIYKD--------RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 247 (788)
Q Consensus 182 ~~---~---~A~~~~~~al~~~p~~~~~~~~la~~~~~--------~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 247 (788)
.. + -+.+++-..++... .+..|+++|..|+. +.+...|+.++++++++..++...|+.||.+ ..
T Consensus 751 ~l~~~d~l~Lg~~c~~~hlsl~~-~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg 828 (1238)
T KOG1127|consen 751 ALKKNDLLFLGYECGIAHLSLAI-HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SG 828 (1238)
T ss_pred cCcchhHHHHHHHHhhHHHHHhh-ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hc
Confidence 11 1 12233333333222 25678888887776 2344579999999999999999999999988 66
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhH
Q 003891 248 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 309 (788)
Q Consensus 248 ~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~ 309 (788)
.|++.-|..+|-+.+...|.....|.++|.++.+..+++-|...|.++..++|.+...|...
T Consensus 829 ~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~ 890 (1238)
T KOG1127|consen 829 IGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGE 890 (1238)
T ss_pred cchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999998877654
|
|
| >TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-14 Score=157.67 Aligned_cols=173 Identities=17% Similarity=0.171 Sum_probs=140.0
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcC----CcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCC
Q 003891 523 TNGFITFGSFNNL--AKITPKVLQVWARILCAVP----NSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILL 596 (788)
Q Consensus 523 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p----~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~ 596 (788)
+++.+++++++++ .|..+.+++++.+++++.| +.+|+++|.| +.++.+++.+++.|+. +++.|.|..
T Consensus 191 ~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g----~~~~~~~~~~~~~~~~-~~v~~~g~~-- 263 (374)
T TIGR03088 191 ADESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDG----PARGACEQMVRAAGLA-HLVWLPGER-- 263 (374)
T ss_pred CCCCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCC----chHHHHHHHHHHcCCc-ceEEEcCCc--
Confidence 4567788888877 7899999999999998876 6799999977 5567888899999998 899999863
Q ss_pred cHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchh-HHHhhhCCccccc--CCHHHHHHHHHHH
Q 003891 597 NHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV-SLLTKVGLKHLIA--KNEDEYVQLALQL 672 (788)
Q Consensus 597 ~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~-~~l~~~gl~~~ia--~~~~~y~~~a~~l 672 (788)
.+....|..+|+++-|+.+ +.|.+++|||+||+|||+ +++++ .=+-.-|..+++. .|.+++++....+
T Consensus 264 -~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~-------s~~~g~~e~i~~~~~g~~~~~~d~~~la~~i~~l 335 (374)
T TIGR03088 264 -DDVPALMQALDLFVLPSLAEGISNTILEAMASGLPVIA-------TAVGGNPELVQHGVTGALVPPGDAVALARALQPY 335 (374)
T ss_pred -CCHHHHHHhcCEEEeccccccCchHHHHHHHcCCCEEE-------cCCCCcHHHhcCCCceEEeCCCCHHHHHHHHHHH
Confidence 5677888889999998866 669999999999999998 44431 0011113333333 5899999999999
Q ss_pred hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 003891 673 ASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 712 (788)
Q Consensus 673 ~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 712 (788)
.+|++.+..++++.++.+.+ .|+.+.+++++++.|+++
T Consensus 336 ~~~~~~~~~~~~~a~~~~~~--~fs~~~~~~~~~~~y~~~ 373 (374)
T TIGR03088 336 VSDPAARRAHGAAGRARAEQ--QFSINAMVAAYAGLYDQL 373 (374)
T ss_pred HhCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHh
Confidence 99999999999998887654 499999999999999875
|
Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.4e-13 Score=145.40 Aligned_cols=289 Identities=18% Similarity=0.203 Sum_probs=218.7
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 82 (788)
Q Consensus 3 i~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 82 (788)
++..+++|+..|++.+. +...|..+...|+-++|..+...++..++....+|.-+|.++...++|++|+++|+
T Consensus 27 LK~~~~iL~k~~eHges-------lAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 27 LKLIKQILKKFPEHGES-------LAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHHHHHHHHhCCccchh-------HHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 46677888899998887 56667777778999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh
Q 003891 83 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 162 (788)
Q Consensus 83 kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~ 162 (788)
.|+.+.|+|...+..++.+..++++++.....-.+.+++.|.....|...+.+...+| ++..|.+..+...+.
T Consensus 100 nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g-------~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 100 NALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLG-------EYKMALEILEEFEKT 172 (700)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998888888888888888777777766665554 444444433333322
Q ss_pred C---C---------------------------------------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 003891 163 N---W---------------------------------------HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 200 (788)
Q Consensus 163 ~---p---------------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 200 (788)
. | +........+.++..++++++|...|...+..+|++
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn 252 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDN 252 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchh
Confidence 1 1 111123456778889999999999999999999998
Q ss_pred HHHHHHHHHHHHHcCCHHHHH-HHHHH----------------------------------HHhh---------------
Q 003891 201 AEACNNLGVIYKDRDNLDKAV-ECYQM----------------------------------ALSI--------------- 230 (788)
Q Consensus 201 ~~~~~~la~~~~~~g~~~eA~-~~~~~----------------------------------al~~--------------- 230 (788)
...+..+-.++..-.+--+++ ..|.. .++.
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~ 332 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKD 332 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhc
Confidence 777666555553111111111 11111 0000
Q ss_pred ------------------------C--------CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003891 231 ------------------------K--------PNF--SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 276 (788)
Q Consensus 231 ------------------------~--------p~~--~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la 276 (788)
+ |.. ...++.++.-+...|+++.|..+++.|+...|+..+.+...|
T Consensus 333 p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~Ka 412 (700)
T KOG1156|consen 333 PEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKA 412 (700)
T ss_pred hhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHH
Confidence 0 111 124566778888999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChhh
Q 003891 277 VLYRDAGSISLAIDAYEQCLKIDPDSRNA 305 (788)
Q Consensus 277 ~~~~~~g~~~eA~~~~~~al~l~p~~~~a 305 (788)
.++...|++++|..+++.+.++|-.|.-.
T Consensus 413 RI~kH~G~l~eAa~~l~ea~elD~aDR~I 441 (700)
T KOG1156|consen 413 RIFKHAGLLDEAAAWLDEAQELDTADRAI 441 (700)
T ss_pred HHHHhcCChHHHHHHHHHHHhccchhHHH
Confidence 99999999999999999999997765443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-12 Score=157.29 Aligned_cols=293 Identities=13% Similarity=0.084 Sum_probs=238.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM-YAEAYCNMGVIYKN 104 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~-~~~~~~~la~~~~~ 104 (788)
|..+-..+...|++++|.+.|+++.+... .+...|..+...|.+.|+.++|.+.|+++.+.... +...|..+...|.+
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 45555667788999999999999887753 35788899999999999999999999999876532 68899999999999
Q ss_pred CCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHH
Q 003891 105 RGDLESAIACYERCLAV--SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY----NWHYADAMYNLGVAYG 178 (788)
Q Consensus 105 ~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~ 178 (788)
.|++++|++.|+++.+. .|+. .+|..+-..+.+.|++++|.+.+++.... .| +...+..+...|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~--------vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~ 590 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDR--------VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACA 590 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCH--------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHH
Confidence 99999999999998765 3442 24445555666678999999999999763 33 4567888889999
Q ss_pred HcCChHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 179 EMLKFDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAE 256 (788)
Q Consensus 179 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~ 256 (788)
+.|++++|.+.|++..+.+ +.+...|..+...|.+.|++++|+++|++..+.. ..+...+..+...|.+.|++++|.+
T Consensus 591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~ 670 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999998875 4567899999999999999999999999998762 2246788899999999999999999
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCChhhHHhHHHHhhhccCCCchHHHHHHHHH
Q 003891 257 MIEKAIAAN-PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI--DPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 331 (788)
Q Consensus 257 ~l~kal~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l--~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~~ 331 (788)
+++++.+.. +.+...+..+...|.+.|++++|.+.|++..+. .|+. ..++ .+...|...|+.+++.+..++.
T Consensus 671 l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdv--vtyN-~LI~gy~k~G~~eeAlelf~eM 745 (1060)
T PLN03218 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV--STMN-ALITALCEGNQLPKALEVLSEM 745 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH--HHHH-HHHHHHHHCCCHHHHHHHHHHH
Confidence 999998874 345788999999999999999999999988664 4432 2223 3555677888888887776654
|
|
| >cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-14 Score=159.40 Aligned_cols=178 Identities=18% Similarity=0.112 Sum_probs=143.4
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 003891 523 TNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 600 (788)
Q Consensus 523 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~ 600 (788)
+++.+++++++++ .|....+++++..+.+..|+.+|+++|.+ +..+.+++.+++.|++ ++|.|.|.++ .++.
T Consensus 190 ~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g----~~~~~l~~~~~~~~l~-~~v~~~G~~~-~~~~ 263 (398)
T cd03796 190 DNDKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDG----PKRILLEEMREKYNLQ-DRVELLGAVP-HERV 263 (398)
T ss_pred CCCceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCC----chHHHHHHHHHHhCCC-CeEEEeCCCC-HHHH
Confidence 3566788888876 89999999999999989999999999977 5677888999999998 8999999987 6899
Q ss_pred HHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHH
Q 003891 601 MQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTAL 679 (788)
Q Consensus 601 ~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~ 679 (788)
...|..+|+++-|+.+ +.|.+++|||+||+|||+-.......- +.. |-.-++..|.+++++...++..+....
T Consensus 264 ~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~~e~-----i~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~ 337 (398)
T cd03796 264 RDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGGIPEV-----LPP-DMILLAEPDVESIVRKLEEAISILRTG 337 (398)
T ss_pred HHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEECCCCCchhh-----eeC-CceeecCCCHHHHHHHHHHHHhChhhh
Confidence 9999999999998866 668899999999999998432222211 111 212234568999999999999987766
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 003891 680 ANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 714 (788)
Q Consensus 680 ~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 714 (788)
..++++.+++..+ .|+++..++++.+.|+++..
T Consensus 338 ~~~~~~~~~~~~~--~fs~~~~~~~~~~~y~~l~~ 370 (398)
T cd03796 338 KHDPWSFHNRVKK--MYSWEDVAKRTEKVYDRILQ 370 (398)
T ss_pred hhHHHHHHHHHHh--hCCHHHHHHHHHHHHHHHhc
Confidence 6677777776654 49999999999999998754
|
Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.8e-13 Score=146.95 Aligned_cols=312 Identities=18% Similarity=0.146 Sum_probs=212.8
Q ss_pred HHHHHHHHHHcC--CCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcC--
Q 003891 2 LVASYHKALSAD--PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP-----HYAPAYYNLGVVYSELM-- 72 (788)
Q Consensus 2 Ai~~~~kaL~~~--P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g-- 72 (788)
|+...++.+... |++.... ++.-..+....+.+++++.+..+++.... -.+.++..+|.+|..+-
T Consensus 376 Av~ll~~~~~~~~~ps~~s~~------Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~ 449 (799)
T KOG4162|consen 376 AVNLLRESLKKSEQPSDISVL------LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQ 449 (799)
T ss_pred HHHHHHhhcccccCCCcchHH------HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhc
Confidence 344555555555 4444332 22222334455667777777777766321 12456666666664321
Q ss_pred ---------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhhhh
Q 003891 73 ---------QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN-FEIAKNNMAIALTDLGTK 142 (788)
Q Consensus 73 ---------~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~lg~~ 142 (788)
...++++.++++++.+|.++.+.++++.-|..+++.+.|..+.++++++++. +...|..++ .+
T Consensus 450 a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLA-------Lv 522 (799)
T KOG4162|consen 450 ANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLA-------LV 522 (799)
T ss_pred CCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHH-------HH
Confidence 2456777777777777777777777777777777777777777777777443 333333333 33
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh---------------------------------------
Q 003891 143 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF--------------------------------------- 183 (788)
Q Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--------------------------------------- 183 (788)
....+++.+|+...+.+++..++|.........+-...++.
T Consensus 523 lSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la 602 (799)
T KOG4162|consen 523 LSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLA 602 (799)
T ss_pred HhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccC
Confidence 33456777777777777766665433222222222222222
Q ss_pred ----HHHHHHHHHHHhc---------------------CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 184 ----DMAIVFYELAFHF---------------------NPH-----CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 233 (788)
Q Consensus 184 ----~~A~~~~~~al~~---------------------~p~-----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 233 (788)
.+|++.++++... .|+ ....|...+..+...++.++|..++.++-+++|.
T Consensus 603 ~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l 682 (799)
T KOG4162|consen 603 LSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL 682 (799)
T ss_pred cccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh
Confidence 2333333332211 011 1245667888899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhhCCCChhhHHhHHH
Q 003891 234 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID--AYEQCLKIDPDSRNAGQNRLL 311 (788)
Q Consensus 234 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~--~~~~al~l~p~~~~a~~~~ll 311 (788)
.+..|+..|.++...|+.++|.+.|..++.++|++..+...+|.++.+.|+..-|.. .+..+++++|.++++|++ +
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~--L 760 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYY--L 760 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHH--H
Confidence 999999999999999999999999999999999999999999999999999888888 999999999999999987 6
Q ss_pred HhhhccCCCchHHHHHH
Q 003891 312 AMNYINEGHDDKLFEAH 328 (788)
Q Consensus 312 a~~~l~~g~~~~~~~~~ 328 (788)
+..+...|+..++.+.+
T Consensus 761 G~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 761 GEVFKKLGDSKQAAECF 777 (799)
T ss_pred HHHHHHccchHHHHHHH
Confidence 77777888887665543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.6e-15 Score=150.28 Aligned_cols=271 Identities=25% Similarity=0.307 Sum_probs=215.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHH
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHY----APAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAEAYC 96 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~kal~~------~p~~~~~~~ 96 (788)
+..-|.-+.+.|++...+..|+.+++...++ ..+|..+|+.|+.+++|++|+++-..=+.+ .-..+...-
T Consensus 20 LalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 20 LALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 3456788899999999999999999987765 457889999999999999999986543322 223456778
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCC--------------------HHHHHHHH
Q 003891 97 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD--------------------INQGVAYY 156 (788)
Q Consensus 97 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~--------------------~~~A~~~~ 156 (788)
+||+++..+|.|++|+.++.+-+.+..... .....+.+++++|.+|...|+ ++.|.++|
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~areLg-Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy 178 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARELG-DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY 178 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHHHh-HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence 999999999999999999999887755433 223346677777777776543 45667777
Q ss_pred HHHHHhCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 157 KKALYYNWHYA------DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------CAEACNNLGVIYKDRDNLDKAVECY 224 (788)
Q Consensus 157 ~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~eA~~~~ 224 (788)
..-+++..... .++-++|+.|+-+|+|++|+..-+.-+.+... ...++.++|.++.-+|+++.|+++|
T Consensus 179 ~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY 258 (639)
T KOG1130|consen 179 MENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY 258 (639)
T ss_pred HHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence 76666544322 36778999999999999999998877776433 2468899999999999999999999
Q ss_pred HHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 225 QMALSIK------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLGVLYRDAGSISLAIDAY 292 (788)
Q Consensus 225 ~~al~~~------p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p------~~~~~~~~la~~~~~~g~~~eA~~~~ 292 (788)
++.+.+. ...+...+.||..|.-..++++|+.++++-+.+.. ....+++.||..+-..|..++|+.+.
T Consensus 259 K~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fa 338 (639)
T KOG1130|consen 259 KLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFA 338 (639)
T ss_pred HHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9987652 22356789999999999999999999999877632 23578899999999999999999998
Q ss_pred HHHHhh
Q 003891 293 EQCLKI 298 (788)
Q Consensus 293 ~~al~l 298 (788)
++.+++
T Consensus 339 e~hl~~ 344 (639)
T KOG1130|consen 339 ELHLRS 344 (639)
T ss_pred HHHHHH
Confidence 888765
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5e-13 Score=158.89 Aligned_cols=289 Identities=14% Similarity=0.064 Sum_probs=234.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER-PMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~-p~~~~~~~~la~~~~~~ 105 (788)
+..+...|.+.|++++|.+.|++. .+.+..+|..+...|.+.|++++|++.|+++.+.. .-+...+..+...+.+.
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~ 338 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 345667888999999999999876 34578899999999999999999999999987643 22567888999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 003891 106 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 185 (788)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 185 (788)
|++++|.+.+..+++...... ..++..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.|+.++
T Consensus 339 g~~~~a~~i~~~m~~~g~~~d------~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~ 409 (697)
T PLN03081 339 ALLEHAKQAHAGLIRTGFPLD------IVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTK 409 (697)
T ss_pred cchHHHHHHHHHHHHhCCCCC------eeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHH
Confidence 999999999999988753211 22344566667778899999999998754 356789999999999999999
Q ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 186 AIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 262 (788)
Q Consensus 186 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~eA~~~l~kal 262 (788)
|++.|++..+.. .-+...+..+...+.+.|..++|.++|++..+... .+...|..+...|.+.|++++|.+.+++.
T Consensus 410 A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~- 488 (697)
T PLN03081 410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA- 488 (697)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-
Confidence 999999988753 22467788888999999999999999999986432 33457888999999999999999998875
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHHH
Q 003891 263 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 331 (788)
Q Consensus 263 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~~ 331 (788)
...| +...|..+...+...|+++.|...+++.+++.|++...+. .+...|...|+.+++.+..+..
T Consensus 489 ~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~--~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 489 PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYV--VLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchH--HHHHHHHhCCCHHHHHHHHHHH
Confidence 2333 4677999999999999999999999999999998766543 4566788889888877665543
|
|
| >PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=161.05 Aligned_cols=173 Identities=15% Similarity=0.085 Sum_probs=144.9
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 003891 524 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 601 (788)
Q Consensus 524 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~ 601 (788)
++.+++++++++ .|..+.+++++.++.++.|+.+|+++|.| +.++.+++.++++|++ ++|.|.|.++ .++..
T Consensus 220 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G----~~~~~l~~~~~~~~l~-~~V~~~G~~~-~~el~ 293 (406)
T PRK15427 220 ATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIG----PWERRLRTLIEQYQLE-DVVEMPGFKP-SHEVK 293 (406)
T ss_pred CCCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECc----hhHHHHHHHHHHcCCC-CeEEEeCCCC-HHHHH
Confidence 345678888877 79999999999999888899999999987 6788999999999998 8999999987 68899
Q ss_pred HhcccccEeecCCC-------CCCchhHHHHhhhCCceeecCCCccCccchh-HHHhhhCCccccc--CCHHHHHHHHHH
Q 003891 602 QAYSLMDISLDTFP-------YAGTTTTCESLYMGVPCVTMAGSVHAHNVGV-SLLTKVGLKHLIA--KNEDEYVQLALQ 671 (788)
Q Consensus 602 ~~~~~~Dv~Ld~~~-------~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~-~~l~~~gl~~~ia--~~~~~y~~~a~~ 671 (788)
..|+.+|+++-|+- .+.+.+++|||++|+|||+ +++++ .=+-.-|..+++. .|.+++++...+
T Consensus 294 ~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~-------t~~~g~~E~v~~~~~G~lv~~~d~~~la~ai~~ 366 (406)
T PRK15427 294 AMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVS-------TLHSGIPELVEADKSGWLVPENDAQALAQRLAA 366 (406)
T ss_pred HHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEE-------eCCCCchhhhcCCCceEEeCCCCHHHHHHHHHH
Confidence 99999999999884 4568899999999999998 44441 0011113344443 589999999999
Q ss_pred Hhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 003891 672 LAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 711 (788)
Q Consensus 672 l~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 711 (788)
|.+ |++.+++|+++.|+++.+. |+.+..++++++.|++
T Consensus 367 l~~~d~~~~~~~~~~ar~~v~~~--f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 367 FSQLDTDELAPVVKRAREKVETD--FNQQVINRELASLLQA 405 (406)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhh
Confidence 999 9999999999999888655 9999999999999976
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-12 Score=141.21 Aligned_cols=307 Identities=16% Similarity=0.075 Sum_probs=220.5
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 003891 13 DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYEKAALERP 89 (788)
Q Consensus 13 ~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p 89 (788)
+|+...+ +..+|..+...|+.+++.+.+.++.+..+.+ .+..+..+..+...|++++|...++++++.+|
T Consensus 2 dp~~~~a-------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P 74 (355)
T cd05804 2 DPDFALG-------HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP 74 (355)
T ss_pred CCccHHH-------HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 6777766 5666667777789999999999988887754 55677889999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----hCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCC
Q 003891 90 MYAEAYCNMGVIYKNRGDLESAIACYERCLA----VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 165 (788)
Q Consensus 90 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 165 (788)
++..++.. +..+...|++..+.....+++. ..|... ..+..++.++..+|++++|+..++++++.+|+
T Consensus 75 ~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~ 146 (355)
T cd05804 75 RDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYW-------YLLGMLAFGLEEAGQYDRAEEAARRALELNPD 146 (355)
T ss_pred CcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99887775 6566655555444444444443 334332 33445566677788999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHH
Q 003891 166 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA----EACNNLGVIYKDRDNLDKAVECYQMALSIKPN--FSQSLN 239 (788)
Q Consensus 166 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~ 239 (788)
+..++..+|.++...|++++|+.++++++...|... ..+..++.++..+|++++|+..|++++...|. ......
T Consensus 147 ~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~ 226 (355)
T cd05804 147 DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLL 226 (355)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHh
Confidence 999999999999999999999999999999876432 35668999999999999999999999876662 222111
Q ss_pred ---HHHHHHHHcCCHHHHHHH--H-HHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---C----hh
Q 003891 240 ---NLGVVYTVQGKMDAAAEM--I-EKAIAANPT--YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD---S----RN 304 (788)
Q Consensus 240 ---~la~~~~~~g~~~eA~~~--l-~kal~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~---~----~~ 304 (788)
.+...+...|....+..+ + .......+. ........+.++...|+.++|...++......-. . ..
T Consensus 227 ~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 306 (355)
T cd05804 227 DAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARD 306 (355)
T ss_pred hHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHh
Confidence 222333444543333332 1 111111121 2233346888888999999999999887664322 1 12
Q ss_pred hHHhHHHHhhhccCCCchHHHHHHHHHHHH
Q 003891 305 AGQNRLLAMNYINEGHDDKLFEAHRDWGKR 334 (788)
Q Consensus 305 a~~~~lla~~~l~~g~~~~~~~~~~~~~~~ 334 (788)
+....+.+..+...|+.+++.+...+....
T Consensus 307 ~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 307 VGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344456777888899988887776654443
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.7e-14 Score=161.53 Aligned_cols=342 Identities=13% Similarity=0.082 Sum_probs=202.0
Q ss_pred CCCeeEeeccC-CcccChh--HHhhhhhhcccCCCceEEEEEeccccCChhhHHHHH-HHhh-hCCeEEEc---cCCCHH
Q 003891 352 ERPLVIGYVSP-DYFTHSV--SYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFRE-KVMK-KGGIWRDI---YGIDEK 423 (788)
Q Consensus 352 ~~~lriGyvS~-df~~H~v--~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~-~~~~-~~~~~~~~---~~~~~~ 423 (788)
.++.||..+.. .+..|.- ...+..+.+.+.+.+.||++.+...........++- .+.. ....+..+ .... .
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~-~ 134 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQEFHGAKVIGSWSFPCPFYQKVPLSLALS-P 134 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCccccCceeeccCCcCCccCCCceeeccCC-H
Confidence 56788887743 2233332 344556666777778899988765432111000000 0000 00000000 0111 2
Q ss_pred HHHHHHHhCCCcEEEeCCCCCCCCcccccc--cCCCCeEEecccCCCCC----CC---------------CCccEEEecC
Q 003891 424 KVAAMVREDKIDILVELTGHTANNKLGMMA--CQPAPVQVTWIGYPNTT----GL---------------PTIDYRITDS 482 (788)
Q Consensus 424 ~~a~~i~~d~idilvdl~g~t~~~~~~~~a--~r~Apvq~~~~g~~~tt----g~---------------~~~Dy~i~d~ 482 (788)
.+.+.|+..++||+.--+.+.. .-..+++ ..-.|+=+++-++.... +. ...|.+++..
T Consensus 135 ~l~~~i~~~kpDiIh~~~~~~~-~~~~~~~ak~~~ip~V~~~h~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ad~ii~~S 213 (465)
T PLN02871 135 RIISEVARFKPDLIHASSPGIM-VFGALFYAKLLCVPLVMSYHTHVPVYIPRYTFSWLVKPMWDIIRFLHRAADLTLVTS 213 (465)
T ss_pred HHHHHHHhCCCCEEEECCCchh-HHHHHHHHHHhCCCEEEEEecCchhhhhcccchhhHHHHHHHHHHHHhhCCEEEECC
Confidence 6788899999999853221110 1111111 22346655554432110 00 1235555432
Q ss_pred CCCCcCccCCC---ccceEEcCCCcc--ccCCCCCCCCCCC-CCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcC
Q 003891 483 LADPPETKQKH---VEELIRLPECFL--CYTPSPEAGPVCP-TPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVP 554 (788)
Q Consensus 483 ~~~p~~~~~~~---~e~l~~lp~~~~--~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p 554 (788)
-..-......+ .+++..+|+..- .|.|.......+. ......+.+++++++++ .|..+.+ .++++..|
T Consensus 214 ~~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~K~~~~l----i~a~~~~~ 289 (465)
T PLN02871 214 PALGKELEAAGVTAANRIRVWNKGVDSESFHPRFRSEEMRARLSGGEPEKPLIVYVGRLGAEKNLDFL----KRVMERLP 289 (465)
T ss_pred HHHHHHHHHcCCCCcCeEEEeCCccCccccCCccccHHHHHHhcCCCCCCeEEEEeCCCchhhhHHHH----HHHHHhCC
Confidence 11111111222 456666665321 1222211110000 11122345677888877 6665444 45566779
Q ss_pred CcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCcee
Q 003891 555 NSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCV 633 (788)
Q Consensus 555 ~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvv 633 (788)
+.+|+++|+| +.++.+++.++. .+|.|+|.++ .++....|+.+||++-|+.+ +.|.+++|||++|+|||
T Consensus 290 ~~~l~ivG~G----~~~~~l~~~~~~-----~~V~f~G~v~-~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G~PVI 359 (465)
T PLN02871 290 GARLAFVGDG----PYREELEKMFAG-----TPTVFTGMLQ-GDELSQAYASGDVFVMPSESETLGFVVLEAMASGVPVV 359 (465)
T ss_pred CcEEEEEeCC----hHHHHHHHHhcc-----CCeEEeccCC-HHHHHHHHHHCCEEEECCcccccCcHHHHHHHcCCCEE
Confidence 9999999987 566666665542 4799999987 68899999999999999876 66889999999999999
Q ss_pred ecCCCccCccchh--HHHhh--hCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 003891 634 TMAGSVHAHNVGV--SLLTK--VGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLES 707 (788)
Q Consensus 634 t~~g~~~~~r~~~--~~l~~--~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~ 707 (788)
+ +++++ .++.. .|-.+++. .|++++.+...++.+|++.++.|+++.++... -|+++..++++++
T Consensus 360 ~-------s~~gg~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~---~fsw~~~a~~l~~ 429 (465)
T PLN02871 360 A-------ARAGGIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLADPELRERMGAAAREEVE---KWDWRAATRKLRN 429 (465)
T ss_pred E-------cCCCCcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHH
Confidence 7 33331 12221 14445553 58999999999999999999999999998763 3899999999997
Q ss_pred -HHHHHHHHHhcC
Q 003891 708 -TYRNMWHRYCKG 719 (788)
Q Consensus 708 -~~~~~~~~~~~~ 719 (788)
.|++++.+|.+.
T Consensus 430 ~~Y~~~~~~~~~~ 442 (465)
T PLN02871 430 EQYSAAIWFWRKK 442 (465)
T ss_pred HHHHHHHHHHHHH
Confidence 799999988764
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-14 Score=146.80 Aligned_cols=281 Identities=23% Similarity=0.281 Sum_probs=221.1
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHH
Q 003891 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDT 76 (788)
Q Consensus 3 i~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~ 76 (788)
+.+|+.|++.-.++... +..+|.++|.+|+..++|++|+++-..-+.+ .-..+.+--++|+.+..+|.|++
T Consensus 37 v~ff~aA~qvGTeDl~t---LSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fde 113 (639)
T KOG1130|consen 37 VDFFKAALQVGTEDLST---LSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDE 113 (639)
T ss_pred HHHHHHHHHhcchHHHH---HHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccch
Confidence 57899999988776554 6778999999999999999999986543332 22345667889999999999999
Q ss_pred HHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHhhCCCcHHHHH
Q 003891 77 ALGCYEKAALERPM------YAEAYCNMGVIYKNRGD--------------------LESAIACYERCLAVSPNFEIAKN 130 (788)
Q Consensus 77 A~~~~~kal~~~p~------~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~p~~~~~~~ 130 (788)
|+.+..+-+..... ...+++++|.+|...|+ ++.|.++|+.-+++..+.. ...
T Consensus 114 A~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lg-Dr~ 192 (639)
T KOG1130|consen 114 ALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLG-DRL 192 (639)
T ss_pred HHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhh-hHH
Confidence 99999888765322 46799999999998774 4456666666666654443 234
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHhcC----C--
Q 003891 131 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA------DAMYNLGVAYGEMLKFDMAIVFYELAFHFN----P-- 198 (788)
Q Consensus 131 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p-- 198 (788)
..+.++-++|+.|+-.|+|++|+..-+.-+.+..+.. .++.++|+++.-+|+++.|+++|++.+.+. .
T Consensus 193 aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~ 272 (639)
T KOG1130|consen 193 AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT 272 (639)
T ss_pred hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh
Confidence 5578899999999999999999999988887755432 478899999999999999999999987652 1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC
Q 003891 199 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP------NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-----PT 267 (788)
Q Consensus 199 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~-----p~ 267 (788)
..+...+.+|..|.-..++++|+.++++-+.+.. ....+++.||..+...|..++|+.+.++.++.. +.
T Consensus 273 vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~s 352 (639)
T KOG1130|consen 273 VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTS 352 (639)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcc
Confidence 2366789999999999999999999999887643 335589999999999999999999998887752 22
Q ss_pred -CHHHHHHHHHHHHHcCCHHH
Q 003891 268 -YAEAYNNLGVLYRDAGSISL 287 (788)
Q Consensus 268 -~~~~~~~la~~~~~~g~~~e 287 (788)
...+..++...-...|..+.
T Consensus 353 gelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 353 GELTARDNLSDLILELGQEDS 373 (639)
T ss_pred hhhhhhhhhHHHHHHhCCCcc
Confidence 24456677777777776443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.6e-14 Score=157.00 Aligned_cols=304 Identities=18% Similarity=0.175 Sum_probs=220.7
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|+..+-++++++|....+ +..+|.+|...-+...|.++|++|.++++.++.++-..+..|.+..+++.|....
T Consensus 477 al~ali~alrld~~~apa-------f~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 477 ALHALIRALRLDVSLAPA-------FAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred HHHHHHHHHhcccchhHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 566788889999987776 6666777766678889999999999999999888888888888888888887776
Q ss_pred HHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHH
Q 003891 82 EKAALERPMY--AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 159 (788)
Q Consensus 82 ~kal~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~a 159 (788)
-.+-+..|.. ...|..+|..|.+.++..+|+..|+.+++.+|++...|..+ |.+|...|.+..|++.|.++
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gL-------GeAY~~sGry~~AlKvF~kA 622 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGL-------GEAYPESGRYSHALKVFTKA 622 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHH-------HHHHHhcCceehHHHhhhhh
Confidence 6555555432 34455677777777888888888888888888776555443 44444466778888888888
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Q 003891 160 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-------AEACNNLGVIYKDRDNLDKAVECYQMALSIK- 231 (788)
Q Consensus 160 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~- 231 (788)
..++|.+..+.+..+.+...+|+|.+|+..+...+...... .+.+...+..+...|-+.+|..+++++++..
T Consensus 623 s~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~ 702 (1238)
T KOG1127|consen 623 SLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFI 702 (1238)
T ss_pred HhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 88888777777777777777777777777777766543322 3333333333333444444444444433220
Q ss_pred --------------------------------------------------C-------------------CCHHHHHHHH
Q 003891 232 --------------------------------------------------P-------------------NFSQSLNNLG 242 (788)
Q Consensus 232 --------------------------------------------------p-------------------~~~~~~~~la 242 (788)
+ ..+..|+++|
T Consensus 703 ~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLG 782 (1238)
T KOG1127|consen 703 VSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLG 782 (1238)
T ss_pred HHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHh
Confidence 1 1244899999
Q ss_pred HHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhh
Q 003891 243 VVYTV--------QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 314 (788)
Q Consensus 243 ~~~~~--------~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~ 314 (788)
..|+. +.+...|+.++++++++..++...|..||.+ ...|++.-|..+|-+.+...|.....|.| ++..
T Consensus 783 inylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~N--lgvL 859 (1238)
T KOG1127|consen 783 INYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLN--LGVL 859 (1238)
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheec--ccee
Confidence 88876 3445689999999999999999999999998 66699999999999999999999999988 4555
Q ss_pred hccCCCch
Q 003891 315 YINEGHDD 322 (788)
Q Consensus 315 ~l~~g~~~ 322 (788)
++...+.+
T Consensus 860 ~l~n~d~E 867 (1238)
T KOG1127|consen 860 VLENQDFE 867 (1238)
T ss_pred EEecccHH
Confidence 66555544
|
|
| >cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.5e-14 Score=153.53 Aligned_cols=339 Identities=16% Similarity=0.104 Sum_probs=216.2
Q ss_pred EeeccCCcccC--hhHHhhhhhhcccCCCceEEEEEeccccCChhhHHHHHHHhh-----hCCeEEEccCCCHHHHHHHH
Q 003891 357 IGYVSPDYFTH--SVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMK-----KGGIWRDIYGIDEKKVAAMV 429 (788)
Q Consensus 357 iGyvS~df~~H--~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~~~~~-----~~~~~~~~~~~~~~~~a~~i 429 (788)
|.+++..+..+ .....+..+...+...+++|.+++.................. ....+..........+...+
T Consensus 2 I~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (374)
T cd03801 2 ILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRRLL 81 (374)
T ss_pred eeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHHHHh
Confidence 45555555433 334555566677766789999887765433221110000000 00000000011134577778
Q ss_pred HhCCCcEEEeCCCCCCCCcccccccCCCCeEEecccCCCCCC------------------CCCccEEEecCCCCCcCccC
Q 003891 430 REDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG------------------LPTIDYRITDSLADPPETKQ 491 (788)
Q Consensus 430 ~~d~idilvdl~g~t~~~~~~~~a~r~Apvq~~~~g~~~ttg------------------~~~~Dy~i~d~~~~p~~~~~ 491 (788)
...++||++-...+...........+-.|+-+...+...... +...|++++-.-..-.....
T Consensus 82 ~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~ 161 (374)
T cd03801 82 RRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSEATREELRE 161 (374)
T ss_pred hhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEecHHHHHHHHh
Confidence 889999998776666544332222344565555544433221 23457776543222223334
Q ss_pred CCc---cceEEcCCCccccCCCCCC-CCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCC
Q 003891 492 KHV---EELIRLPECFLCYTPSPEA-GPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPF 565 (788)
Q Consensus 492 ~~~---e~l~~lp~~~~~~~~~~~~-~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~ 565 (788)
.+. .++..+|+..- ....... ...........+.++++.+++. .|....++++|..+....|+.+|++.|.+
T Consensus 162 ~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~- 239 (374)
T cd03801 162 LGGVPPEKITVIPNGVD-TERFRPAPRAARRRLGIPEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIVGDG- 239 (374)
T ss_pred cCCCCCCcEEEecCccc-ccccCccchHHHhhcCCcCCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEEEEEeCc-
Confidence 443 46777776421 1110000 0001223344556677777764 89999999999999999999999999865
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccc
Q 003891 566 CCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNV 644 (788)
Q Consensus 566 ~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~ 644 (788)
.....+.+.+.+.+.. ++|.|.|.++ .++....|..+|+++.|+.+ +.+++.+|||++|+|||+.....+...+
T Consensus 240 ---~~~~~~~~~~~~~~~~-~~v~~~g~~~-~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~~~~~~~ 314 (374)
T cd03801 240 ---PLREELEALAAELGLG-DRVTFLGFVP-DEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVGGIPEVV 314 (374)
T ss_pred ---HHHHHHHHHHHHhCCC-cceEEEeccC-hhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeCCCChhHHh
Confidence 6677777777788887 8999999987 68899999999999999977 6688999999999999996654333322
Q ss_pred hhHHHhhhCCcccccC--CHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 645 GVSLLTKVGLKHLIAK--NEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 645 ~~~~l~~~gl~~~ia~--~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
.. +-..++.. |++++++...++.+|++.+..++++.++...+. |+++.+++.+.+.|+
T Consensus 315 -----~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 374 (374)
T cd03801 315 -----ED-GETGLLVPPGDPEALAEAILRLLDDPELRRRLGEAARERVAER--FSWDRVAARTEEVYY 374 (374)
T ss_pred -----cC-CcceEEeCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHhhC
Confidence 11 33334433 469999999999999999999999988666544 899999999988773
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.6e-12 Score=140.41 Aligned_cols=271 Identities=18% Similarity=0.064 Sum_probs=199.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHH
Q 003891 54 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 130 (788)
Q Consensus 54 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 130 (788)
+|+.+.++..+|.++...|+.+++...+.++.+..+.+ .+.....+.++...|++++|.+.++++++.+|++...+.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 79999999999999999999999999999988877644 567788899999999999999999999999999885554
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 003891 131 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 210 (788)
Q Consensus 131 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 210 (788)
. +..+..++.. .+....+.+.+......+|........+|.++...|++++|+..++++++.+|++..++..+|.+
T Consensus 82 ~-~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i 157 (355)
T cd05804 82 L-HLGAFGLGDF---SGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHV 157 (355)
T ss_pred H-hHHHHHhccc---ccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 3 3344444422 34555555555554456677778888999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHH---HHHHHHHH
Q 003891 211 YKDRDNLDKAVECYQMALSIKPNFS----QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT--YAEAYN---NLGVLYRD 281 (788)
Q Consensus 211 ~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~--~~~~~~---~la~~~~~ 281 (788)
+...|++++|+.++++++...|..+ ..+..++.++...|++++|+..|++++...|. ...... .+...+..
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLEL 237 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHh
Confidence 9999999999999999999876443 24668999999999999999999999876662 221111 22233344
Q ss_pred cCCHHHHHHH---HHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHH
Q 003891 282 AGSISLAIDA---YEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 328 (788)
Q Consensus 282 ~g~~~eA~~~---~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~ 328 (788)
.|....+..+ ........|...........+..++..|+.+++....
T Consensus 238 ~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 238 AGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred cCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 4433333332 1111111122222233334556666777766655443
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.5e-13 Score=147.38 Aligned_cols=335 Identities=11% Similarity=0.018 Sum_probs=204.7
Q ss_pred eEeeccCCcccChhHHhhhhhhcccCCCceEEEEEeccccCChhh--HHHHHHHhhhCCeEEEccCCCHHH---H----H
Q 003891 356 VIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKT--IRFREKVMKKGGIWRDIYGIDEKK---V----A 426 (788)
Q Consensus 356 riGyvS~df~~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t--~~~r~~~~~~~~~~~~~~~~~~~~---~----a 426 (788)
||.++++.+..--+...+..+.+..++.+.|+.+|...+..+... .++.... . +... .++... . .
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~--g~~~---~~~~~~~~~~~~~~~ 74 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFNVTKKFHNAL-Q--GADI---ELSEEEKEIYLEWNE 74 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHHHHHHhhHhh-c--CCCC---CCCHHHHHHHHHHHH
Confidence 466677767666677778888888888999999987655332211 1111111 0 1111 222221 1 1
Q ss_pred HH----HHhCCCcEEEeCCCCCCCC-cccccccC-CCCeEEecccCCCCC----------CCCCccEEEecCCCCCcCcc
Q 003891 427 AM----VREDKIDILVELTGHTANN-KLGMMACQ-PAPVQVTWIGYPNTT----------GLPTIDYRITDSLADPPETK 490 (788)
Q Consensus 427 ~~----i~~d~idilvdl~g~t~~~-~~~~~a~r-~Apvq~~~~g~~~tt----------g~~~~Dy~i~d~~~~p~~~~ 490 (788)
.. +...+.||++- |+... -+..+..+ -.|+=+.+-+...+. .+...|.+++.. +....
T Consensus 75 ~~~~~~~~~~~~Dvv~~---h~~~~~~~~~~~~~~~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~d~~i~~~---~~~~~ 148 (372)
T cd03792 75 ENAERPLLDLDADVVVI---HDPQPLALPLFKKKRGRPWIWRCHIDLSSPNRRVWDFLQPYIEDYDAAVFHL---PEYVP 148 (372)
T ss_pred HHhccccccCCCCEEEE---CCCCchhHHHhhhcCCCeEEEEeeeecCCCcHHHHHHHHHHHHhCCEEeecH---HHhcC
Confidence 11 22568999963 22211 12222222 345333322211110 012245544322 11122
Q ss_pred CCCccceEEcCCCccccCCC--CCCC----CCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEec
Q 003891 491 QKHVEELIRLPECFLCYTPS--PEAG----PVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKC 562 (788)
Q Consensus 491 ~~~~e~l~~lp~~~~~~~~~--~~~~----~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~ 562 (788)
..+..+.+.+|+..=...+. ...+ ..+...+++.+.++++.++|+ .|..+.+++++.++.+..|+.+|+++|
T Consensus 149 ~~~~~~~~vipngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G 228 (372)
T cd03792 149 PQVPPRKVIIPPSIDPLSGKNRELSPADIEYILEKYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVG 228 (372)
T ss_pred CCCCCceEEeCCCCCCCccccCCCCHHHHHHHHHHhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEe
Confidence 23333333666532111000 0000 011124566677788999987 899999999999999888999999999
Q ss_pred CCCCCHH-HHHHHHHHHHHcCCCCCcEEEcCCcC-CcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCc
Q 003891 563 KPFCCDS-VRHRFLSTLEQLGLESLRVDLLPLIL-LNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSV 639 (788)
Q Consensus 563 ~~~~~~~-~~~~l~~~~~~~gi~~~rv~~~~~~~-~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~ 639 (788)
.+...++ ....+++..+..|+. ++|.|.+..+ +.++....|+.+|+|+-|+.+ +.|.+++|||++|+|||+-....
T Consensus 229 ~g~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~ 307 (372)
T cd03792 229 SGATDDPEGWIVYEEVLEYAEGD-PDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVGG 307 (372)
T ss_pred CCCCCCchhHHHHHHHHHHhCCC-CCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCCC
Confidence 7743222 223334444457877 7899988763 367788899999999999977 56999999999999999843222
Q ss_pred cCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 003891 640 HAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 711 (788)
Q Consensus 640 ~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 711 (788)
... ...-|..++++.+.++......++.+|++.++.|+++.++.+.+. |+++..++++.+.|+.
T Consensus 308 ~~~------~i~~~~~g~~~~~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~~--~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 308 IPL------QIEDGETGFLVDTVEEAAVRILYLLRDPELRRKMGANAREHVREN--FLITRHLKDYLYLISK 371 (372)
T ss_pred chh------hcccCCceEEeCCcHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHh
Confidence 111 112355667778889998888899999999999999998876543 8999999999999975
|
The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.1e-13 Score=136.24 Aligned_cols=118 Identities=15% Similarity=0.152 Sum_probs=87.9
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHH--
Q 003891 53 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA---EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI-- 127 (788)
Q Consensus 53 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 127 (788)
.++..+..++.+|..+...|++++|+..+++++..+|.++ .+++.+|.++...|++++|+..|+++++..|++..
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3456788899999999999999999999999999988765 57899999999999999999999999999988765
Q ss_pred -HHHHHHHHHHHh-hhhhhhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003891 128 -AKNNMAIALTDL-GTKVKLEGDINQGVAYYKKALYYNWHYADAM 170 (788)
Q Consensus 128 -~~~~la~~l~~l-g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 170 (788)
+++.++.++... +..+...|++++|++.+++++..+|++....
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 152 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAP 152 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHH
Confidence 344444444332 2222233566777777777777776665443
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-13 Score=147.81 Aligned_cols=319 Identities=15% Similarity=0.149 Sum_probs=195.8
Q ss_pred eEeeccCCcc-cChhHHhhhhhhcccCCCceEEEEEeccccCChhhHHHHHHHhhhCCeEEEc----------cCCCHHH
Q 003891 356 VIGYVSPDYF-THSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDI----------YGIDEKK 424 (788)
Q Consensus 356 riGyvS~df~-~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~~~~~~~~~~~~~----------~~~~~~~ 424 (788)
||.+++..+. .--+...+..+...+.+.+++|++++........ ...... -.+..+ .-.....
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 74 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPPF-YELDPK-----IKVIDLGDKRDSKLLARFKKLRR 74 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCc-cccCCc-----cceeecccccccchhccccchHH
Confidence 3556666655 2223344445556665578888888765543010 000100 011111 1123467
Q ss_pred HHHHHHhCCCcEEEeCCCCCCCCcccccccCCCCeEEecccCCCCCC------------CCCccEEEecCCCCCcCccCC
Q 003891 425 VAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG------------LPTIDYRITDSLADPPETKQK 492 (788)
Q Consensus 425 ~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~Apvq~~~~g~~~ttg------------~~~~Dy~i~d~~~~p~~~~~~ 492 (788)
+.+.|+..++|+++-..++ ...-+..+..+..|+=+..-+.+.... +...|.+++..-..-......
T Consensus 75 ~~~~l~~~~~d~i~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~ 153 (348)
T cd03820 75 LRKLLKNNKPDVVISFLTS-LLTFLASLGLKIVKLIVSEHNSPDAYKKRLRRLLLRRLLYRRADAVVVLTEEDRALYYKK 153 (348)
T ss_pred HHHhhcccCCCEEEEcCch-HHHHHHHHhhccccEEEecCCCccchhhhhHHHHHHHHHHhcCCEEEEeCHHHHHHhhcc
Confidence 8888999999999977665 111111111222133222222221111 345677765432211112233
Q ss_pred CccceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHH
Q 003891 493 HVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSV 570 (788)
Q Consensus 493 ~~e~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~ 570 (788)
+..++..+|+.. ..... .+. .+.+..+|+++++. .|..+.++++|.++.+..|+.+|+++|.+ ..
T Consensus 154 ~~~~~~vi~~~~-~~~~~--~~~------~~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~----~~ 220 (348)
T cd03820 154 FNKNVVVIPNPL-PFPPE--EPS------SDLKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDG----PE 220 (348)
T ss_pred CCCCeEEecCCc-Chhhc--ccc------CCCCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCC----CC
Confidence 456677777542 11110 000 23444566666654 88999999999999988999999999876 34
Q ss_pred HHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHH
Q 003891 571 RHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL 649 (788)
Q Consensus 571 ~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l 649 (788)
...+.+.+++.|+. ++|.|.|. .++....|+.+|+++-|+.+ +.|++++|||++|+|||+....... ..+
T Consensus 221 ~~~~~~~~~~~~~~-~~v~~~g~---~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~-----~~~ 291 (348)
T cd03820 221 REALEALIKELGLE-DRVILLGF---TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP-----SEI 291 (348)
T ss_pred HHHHHHHHHHcCCC-CeEEEcCC---cchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCEEEecCCCch-----Hhh
Confidence 56677778888997 89999987 46788889999999999977 6699999999999999984322111 112
Q ss_pred hhhCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 003891 650 TKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLE 706 (788)
Q Consensus 650 ~~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e 706 (788)
..-|-.+++. .|.+++++...++.+|++.++.++++.+.... . |+++.+++.++
T Consensus 292 ~~~~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~ 347 (348)
T cd03820 292 IEDGVNGLLVPNGDVEALAEALLRLMEDEELRKRMGANARESAE-R--FSIENIIKQWE 347 (348)
T ss_pred hccCcceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-H--hCHHHHHHHhc
Confidence 2223234443 46799999999999999999999998865442 3 88888887764
|
AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran. |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.1e-12 Score=153.96 Aligned_cols=261 Identities=15% Similarity=0.084 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 003891 58 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 137 (788)
Q Consensus 58 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 137 (788)
..++..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.|+.++|+..|++++...+.+...+..+..++.
T Consensus 424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACA 500 (857)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHh
Confidence 34556666777777888888887776533 345577778888888888888888888877543333322222222222
Q ss_pred ----------------------------HhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003891 138 ----------------------------DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 189 (788)
Q Consensus 138 ----------------------------~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 189 (788)
.+-..|.+.|++++|.+.|++. +.+...|..+...|...|+.++|++.
T Consensus 501 ~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHH
Confidence 2336677889999999999886 56778899999999999999999999
Q ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003891 190 YELAFHF--NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 265 (788)
Q Consensus 190 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~ 265 (788)
|++..+. .|+ ...+..+-..+.+.|+.++|.++|++..+..+ .+...|..+..++.+.|++++|.+.+++. ...
T Consensus 577 f~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~ 654 (857)
T PLN03077 577 FNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PIT 654 (857)
T ss_pred HHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCC
Confidence 9998874 444 55566667788999999999999999885432 34578899999999999999999999886 345
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHH
Q 003891 266 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 330 (788)
Q Consensus 266 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~ 330 (788)
|+ ..+|..|-..+...|+.+.+....+++++++|++...+ .+++..|...|+.+++.+..+.
T Consensus 655 pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y--~ll~n~ya~~g~~~~a~~vr~~ 716 (857)
T PLN03077 655 PD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYY--ILLCNLYADAGKWDEVARVRKT 716 (857)
T ss_pred CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH--HHHHHHHHHCCChHHHHHHHHH
Confidence 54 67788888888999999999999999999999976654 3566788888888776655443
|
|
| >cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-13 Score=148.12 Aligned_cols=337 Identities=16% Similarity=0.089 Sum_probs=203.8
Q ss_pred eEeeccCCcc-cChhHHhhhhhhcccCCCceEEEEEeccccCChhhHHHHHHHhhhCCeEEEc-cCCCHHHHHHHHHhCC
Q 003891 356 VIGYVSPDYF-THSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDI-YGIDEKKVAAMVREDK 433 (788)
Q Consensus 356 riGyvS~df~-~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~~~~~~~~~~~~~-~~~~~~~~a~~i~~d~ 433 (788)
+|+|+++... .--+..+...+...+...+.++.++........... .... ........ .......+.+.++..+
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLY-GGEQ---EVVRVIVLDNPLDYRRAARAIRLSG 76 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccC-CCcc---cceeeeecCCchhHHHHHHHHhhcC
Confidence 4677776543 233556677777777777778877765432211100 0000 00011111 1233456788899999
Q ss_pred CcEEEeCCCCCC-CCccccccc-----CCCCeEEecccC-CCCCC----------CCCccEEEecC-CCCCcCccCCCcc
Q 003891 434 IDILVELTGHTA-NNKLGMMAC-----QPAPVQVTWIGY-PNTTG----------LPTIDYRITDS-LADPPETKQKHVE 495 (788)
Q Consensus 434 idilvdl~g~t~-~~~~~~~a~-----r~Apvq~~~~g~-~~ttg----------~~~~Dy~i~d~-~~~p~~~~~~~~e 495 (788)
+||++-...+.- +........ +..|+-+..-++ +.... +...|.+++.. -..-.-....+.+
T Consensus 77 ~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~ 156 (366)
T cd03822 77 PDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEPRPGDRALLRLLLRRADAVIVMSSELLRALLLRAYPE 156 (366)
T ss_pred CCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCccccchhhhHHHHHHHhcCCEEEEeeHHHHHHHHhhcCCC
Confidence 999985432211 111111111 445665555444 11110 12346666542 0000001122357
Q ss_pred ceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHH-H
Q 003891 496 ELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR-H 572 (788)
Q Consensus 496 ~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~-~ 572 (788)
++..+|+..-...+.. .........+.+.+++++++++ .|..+.+++++.++.+..|+.+|+++|.+....... .
T Consensus 157 ~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~ 234 (366)
T cd03822 157 KIAVIPHGVPDPPAEP--PESLKALGGLDGRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDLERYRG 234 (366)
T ss_pred cEEEeCCCCcCcccCC--chhhHhhcCCCCCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccchhhhhh
Confidence 8888886532111110 0000111234455677777755 788999999999999999999999998753211111 1
Q ss_pred HHHHHHHHcCCCCCcEEEcCC-cCCcHHHHHhcccccEeecCCCCC---CchhHHHHhhhCCceeecCCCccCccchhHH
Q 003891 573 RFLSTLEQLGLESLRVDLLPL-ILLNHDHMQAYSLMDISLDTFPYA---GTTTTCESLYMGVPCVTMAGSVHAHNVGVSL 648 (788)
Q Consensus 573 ~l~~~~~~~gi~~~rv~~~~~-~~~~~~~~~~~~~~Dv~Ld~~~~~---g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~ 648 (788)
...+.+++.|+. ++|.|.|. ++ .++....|+.+|+++-|+.+. .+.+.+|||++|+|||+..... ...
T Consensus 235 ~~~~~i~~~~~~-~~v~~~~~~~~-~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~~~----- 306 (366)
T cd03822 235 EAYALAERLGLA-DRVIFINRYLP-DEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-AEE----- 306 (366)
T ss_pred hhHhHHHhcCCC-CcEEEecCcCC-HHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-hhe-----
Confidence 111346788997 89999987 66 688999999999999998665 4779999999999999844221 111
Q ss_pred HhhhCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 649 LTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 649 l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
+.. +-.+++. .|.+++++....+.+|++.+.+++++.+....+ |+++.+++.+.++|+
T Consensus 307 i~~-~~~g~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~---~s~~~~~~~~~~~~~ 366 (366)
T cd03822 307 VLD-GGTGLLVPPGDPAALAEAIRRLLADPELAQALRARAREYARA---MSWERVAERYLRLLA 366 (366)
T ss_pred eee-CCCcEEEcCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHhC
Confidence 111 2334443 579999999999999999999999998877643 899999999998873
|
ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-12 Score=139.43 Aligned_cols=268 Identities=14% Similarity=0.113 Sum_probs=218.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 106 (788)
++..+.-.+..++|.+.++..+++++..|++++.+...|..+..+|+-++|..+...++..++....+|..+|.++....
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh
Confidence 66777778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 003891 107 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 186 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 186 (788)
+|++|+++|+.|+.+.|++...+..++....++ ++++.....-.+.++..|..-..|...+..+...|++..|
T Consensus 90 ~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Qm-------Rd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQM-------RDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH-------HhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987777666665554 4899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC---CCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 187 IVFYELAFHFN---PHC-----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 258 (788)
Q Consensus 187 ~~~~~~al~~~---p~~-----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l 258 (788)
....+...+.. |+. .+.......+..+.|.+++|++.+.+--..--+........+.++.+++++++|...|
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 99888877654 332 3455556677777888888887776643333333445566788888899999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Q 003891 259 EKAIAANPTYAEAYNNLGVLYRDAGSISLAI-DAYEQCLKIDPD 301 (788)
Q Consensus 259 ~kal~~~p~~~~~~~~la~~~~~~g~~~eA~-~~~~~al~l~p~ 301 (788)
...+..+|++...+..+-.++.+-.+--++. ..|...-+..|.
T Consensus 243 ~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r 286 (700)
T KOG1156|consen 243 RRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR 286 (700)
T ss_pred HHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence 9999999998888887777775333333344 455554444443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.55 E-value=5e-13 Score=136.91 Aligned_cols=187 Identities=18% Similarity=0.133 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HH
Q 003891 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA---PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE---AY 95 (788)
Q Consensus 22 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~---~~ 95 (788)
..+..++.+|..++..|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+..|+++++..|+++. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3456689999999999999999999999999999875 68899999999999999999999999999998765 79
Q ss_pred HHHHHHHHHC--------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCH
Q 003891 96 CNMGVIYKNR--------GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 167 (788)
Q Consensus 96 ~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 167 (788)
+.+|.++... |++++|++.|+++++.+|++......+ ..++.. ... ..
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~----~~~~~~-------~~~-------------~~ 166 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK----KRMDYL-------RNR-------------LA 166 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH----HHHHHH-------HHH-------------HH
Confidence 9999999986 889999999999999999986543222 111111 000 01
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003891 168 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH---CAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 232 (788)
Q Consensus 168 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 232 (788)
.....+|.++...|++++|+..++++++..|+ ...+++.+|.++...|++++|..+++......|
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 22357788899999999999999999988665 467899999999999999999998888776555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-12 Score=153.24 Aligned_cols=261 Identities=15% Similarity=0.098 Sum_probs=221.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKID-PHYAPAYYNLGVVYSELMQYDTALGCYEKAALER-PMYAEAYCNMGVIYK 103 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~-p~~~~~~~~la~~~~ 103 (788)
+|..+...|.+.|++++|+++|++..+.. .-+...+..+...+.+.|++++|.+.+..+++.. +.+..++..+...|.
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~ 371 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS 371 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHH
Confidence 47778888999999999999999997753 2356789999999999999999999999999875 556788999999999
Q ss_pred HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Q 003891 104 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW-HYADAMYNLGVAYGEMLK 182 (788)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~ 182 (788)
+.|++++|.+.|++..+ |+ . ..|..+...|.+.|+.++|++.|++..+... -+...+..+...+...|+
T Consensus 372 k~G~~~~A~~vf~~m~~--~d-~-------~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 441 (697)
T PLN03081 372 KWGRMEDARNVFDRMPR--KN-L-------ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL 441 (697)
T ss_pred HCCCHHHHHHHHHhCCC--CC-e-------eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCc
Confidence 99999999999998764 32 2 2344555566678899999999999887532 245668888889999999
Q ss_pred hHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 183 FDMAIVFYELAFHFNP--HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 260 (788)
Q Consensus 183 ~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~k 260 (788)
.++|.++|+...+... .+...|..+...|.+.|++++|.+.+++. ... .+...|..+...+...|+++.|...+++
T Consensus 442 ~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~-p~~~~~~~Ll~a~~~~g~~~~a~~~~~~ 519 (697)
T PLN03081 442 SEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFK-PTVNMWAALLTACRIHKNLELGRLAAEK 519 (697)
T ss_pred HHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 9999999999986422 24568889999999999999999999875 223 3466799999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 261 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 261 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
.+++.|++...|..++.+|.+.|++++|.+.+++..+.
T Consensus 520 l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 520 LYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999988765
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-13 Score=127.35 Aligned_cols=122 Identities=15% Similarity=0.160 Sum_probs=74.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003891 188 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 267 (788)
Q Consensus 188 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 267 (788)
..++++++.+|++ +..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|++++.++|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4455555555543 3445666666666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHH
Q 003891 268 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 312 (788)
Q Consensus 268 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla 312 (788)
++.+++++|.++..+|++++|++.|++++++.|++...+.++..+
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 666666666666666666666666666666666666655544333
|
|
| >cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.4e-13 Score=143.65 Aligned_cols=331 Identities=16% Similarity=0.106 Sum_probs=199.0
Q ss_pred EeeccCCcccChhHHhhhhhhcccCCCceEEEEEeccccCChhhHHHHHHHhhhCCeEEEcc--C--C---CHHHHHHHH
Q 003891 357 IGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIY--G--I---DEKKVAAMV 429 (788)
Q Consensus 357 iGyvS~df~~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~~~~~~~~~~~~~~--~--~---~~~~~a~~i 429 (788)
|.++.+.+..=-....+..+.....+.++++.+++.....+ ....++. ..-....+. . . ....+.+.+
T Consensus 2 i~~i~~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~-~~~~~~~----~~i~v~~~~~~~~~~~~~~~~~~~~~~ 76 (365)
T cd03807 2 VLHVITGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDRGE-LGEELEE----AGVPVYCLGKRPGRPDPGALLRLYKLI 76 (365)
T ss_pred eEEEEeeccCccHHHHHHHHHHHhhhccceEEEEecCcchh-hhHHHHh----cCCeEEEEecccccccHHHHHHHHHHH
Confidence 34444444332244555667777777788888877643322 1122222 011111221 1 0 124577888
Q ss_pred HhCCCcEEEeCCCCCCCCccccccc-CCCCeEEecccCCCCCC--------------CCCccEEEecCCCCCcCcc--CC
Q 003891 430 REDKIDILVELTGHTANNKLGMMAC-QPAPVQVTWIGYPNTTG--------------LPTIDYRITDSLADPPETK--QK 492 (788)
Q Consensus 430 ~~d~idilvdl~g~t~~~~~~~~a~-r~Apvq~~~~g~~~ttg--------------~~~~Dy~i~d~~~~p~~~~--~~ 492 (788)
+..++||++-...++.......... +-.|+-.+..+.....+ ....|.+++-....-.... ..
T Consensus 77 ~~~~~div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~ 156 (365)
T cd03807 77 RRLRPDVVHTWMYHADLYGGLAARLAGVPPVIWGIRHSDLDLGKKSTRLVARLRRLLSSFIPLIVANSAAAAEYHQAIGY 156 (365)
T ss_pred HhhCCCEEEeccccccHHHHHHHHhcCCCcEEEEecCCcccccchhHhHHHHHHHHhccccCeEEeccHHHHHHHHHcCC
Confidence 8999999986544432111111111 33444444434333221 1223443321110000001 12
Q ss_pred CccceEEcCCCccc--cCCCCCCC-CCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC
Q 003891 493 HVEELIRLPECFLC--YTPSPEAG-PVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC 567 (788)
Q Consensus 493 ~~e~l~~lp~~~~~--~~~~~~~~-~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~ 567 (788)
-.+++..+|+..-. +.+..... ..+...+++++.++|+.+++. .|..+.+++++.++....|+.+|+++|.+.
T Consensus 157 ~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~-- 234 (365)
T cd03807 157 PPKKIVVIPNGVDTERFSPDLDARARLREELGLPEDTFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGP-- 234 (365)
T ss_pred ChhheeEeCCCcCHHhcCCcccchHHHHHhcCCCCCCeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCc--
Confidence 23566667753211 11111100 011233556677788888876 789999999999999999999999998763
Q ss_pred HHHHHHHHHHHH-HcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccch
Q 003891 568 DSVRHRFLSTLE-QLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVG 645 (788)
Q Consensus 568 ~~~~~~l~~~~~-~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 645 (788)
....+..... ..|+. ++|.|.|.. .+....|+.+|+++-|+.+ +.+++++|||++|+|||+-......
T Consensus 235 --~~~~~~~~~~~~~~~~-~~v~~~g~~---~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~~~~---- 304 (365)
T cd03807 235 --DRANLELLALKELGLE-DKVILLGER---SDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVATDVGDNA---- 304 (365)
T ss_pred --chhHHHHHHHHhcCCC-ceEEEcccc---ccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEEcCCCChH----
Confidence 2333344444 77887 899999864 4677888999999999977 6689999999999999984322111
Q ss_pred hHHHhhhCCcccc--cCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 646 VSLLTKVGLKHLI--AKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 646 ~~~l~~~gl~~~i--a~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
.++.. .+++ ..|.+++++....+.+|++.+..++++.++...+. |+++..++.+++.|+
T Consensus 305 -e~~~~---~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~~~y~ 365 (365)
T cd03807 305 -ELVGD---TGFLVPPGDPEALAEAIEALLADPALRQALGEAARERIEEN--FSIEAMVEAYEELYR 365 (365)
T ss_pred -HHhhc---CCEEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHhC
Confidence 12222 2222 35899999999999999999999999988876544 899999999999884
|
WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis. |
| >TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.1e-13 Score=149.52 Aligned_cols=208 Identities=15% Similarity=0.138 Sum_probs=156.0
Q ss_pred ccceEEcCCCcc--ccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC--cEEEEecCCCCC
Q 003891 494 VEELIRLPECFL--CYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPN--SRLVVKCKPFCC 567 (788)
Q Consensus 494 ~e~l~~lp~~~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~--~~l~l~~~~~~~ 567 (788)
.+++..+|+..- .|.|.+ ........+++++.++|++++++ .|..+.+++++.++++..|+ .+|+++|++...
T Consensus 186 ~~ki~vi~ngvd~~~~~~~~-~~~~~~~~~~~~~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~ 264 (405)
T TIGR03449 186 PDRIDVVAPGADLERFRPGD-RATERARLGLPLDTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGS 264 (405)
T ss_pred hhhEEEECCCcCHHHcCCCc-HHHHHHhcCCCCCCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCC
Confidence 366777776421 122221 11112223455667788888877 79999999999999998887 888988864322
Q ss_pred H-HHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccch
Q 003891 568 D-SVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVG 645 (788)
Q Consensus 568 ~-~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 645 (788)
. +..+.+++..++.|+. ++|.|+|.++ .++....|+.+|+++-|+-. +.|.+++|||++|+|||+.......
T Consensus 265 g~~~~~~l~~~~~~~~l~-~~v~~~g~~~-~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~~~---- 338 (405)
T TIGR03449 265 GLATPDALIELAAELGIA-DRVRFLPPRP-PEELVHVYRAADVVAVPSYNESFGLVAMEAQACGTPVVAARVGGLP---- 338 (405)
T ss_pred cchHHHHHHHHHHHcCCC-ceEEECCCCC-HHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCCCcH----
Confidence 2 4667888899999998 8999999987 68889999999999988855 6789999999999999984322111
Q ss_pred hHHHhhhCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 003891 646 VSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 713 (788)
Q Consensus 646 ~~~l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 713 (788)
.++ .-|-.++++ .|.+++.+...++.+|++.++.++++.++... .|+++.+++++++.|.++.
T Consensus 339 -e~i-~~~~~g~~~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~---~fsw~~~~~~~~~~y~~~~ 403 (405)
T TIGR03449 339 -VAV-ADGETGLLVDGHDPADWADALARLLDDPRTRIRMGAAAVEHAA---GFSWAATADGLLSSYRDAL 403 (405)
T ss_pred -hhh-ccCCceEECCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHh
Confidence 111 123344444 48999999999999999999999999887642 3899999999999998764
|
Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species. |
| >cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.6e-13 Score=148.84 Aligned_cols=167 Identities=19% Similarity=0.109 Sum_probs=133.3
Q ss_pred eEEEecCC--CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc
Q 003891 527 ITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 604 (788)
Q Consensus 527 ~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~ 604 (788)
.+++++++ ..|..+.+++++.++.++.|+.+|+++|.+ +..+.+++.+++.|+. ++|.|.|.++ .++....|
T Consensus 189 ~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g----~~~~~~~~~~~~~~~~-~~v~~~g~~~-~~~l~~~~ 262 (367)
T cd05844 189 PRILFVGRFVEKKGPLLLLEAFARLARRVPEVRLVIIGDG----PLLAALEALARALGLG-GRVTFLGAQP-HAEVRELM 262 (367)
T ss_pred cEEEEEEeeccccChHHHHHHHHHHHHhCCCeEEEEEeCc----hHHHHHHHHHHHcCCC-CeEEECCCCC-HHHHHHHH
Confidence 34555554 489999999999999999999999999976 5667888888999997 8999999987 68889999
Q ss_pred ccccEeecCCC-------CCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc--CCHHHHHHHHHHHhcC
Q 003891 605 SLMDISLDTFP-------YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASD 675 (788)
Q Consensus 605 ~~~Dv~Ld~~~-------~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~y~~~a~~l~~d 675 (788)
+.+|+++-|+. .+.|++.+|||++|+|||+-....+.. ++.. |-.+++. .|.+++++...++.+|
T Consensus 263 ~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e-----~i~~-~~~g~~~~~~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 263 RRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPE-----AVED-GETGLLVPEGDVAALAAALGRLLAD 336 (367)
T ss_pred HhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCCchh-----heec-CCeeEEECCCCHHHHHHHHHHHHcC
Confidence 99999998874 356899999999999999844332222 1111 2223333 4899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 003891 676 VTALANLRMSLRDLMSKSPVCDGQNFALGLES 707 (788)
Q Consensus 676 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~ 707 (788)
++.+..++.+.++.+.+ .|+++.++..+++
T Consensus 337 ~~~~~~~~~~a~~~~~~--~~s~~~~~~~l~~ 366 (367)
T cd05844 337 PDLRARMGAAGRRRVEE--RFDLRRQTAKLEA 366 (367)
T ss_pred HHHHHHHHHHHHHHHHH--HCCHHHHHHHHhc
Confidence 99999999998887654 3899999988875
|
The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.9e-13 Score=125.71 Aligned_cols=127 Identities=17% Similarity=0.107 Sum_probs=119.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003891 153 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 232 (788)
Q Consensus 153 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 232 (788)
..+++++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++.+|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46789999998875 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003891 233 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 282 (788)
Q Consensus 233 ~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~ 282 (788)
+++.+++++|.++...|++++|+..|+++++..|+++..+.+++.+....
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888876543
|
|
| >cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.2e-13 Score=151.90 Aligned_cols=173 Identities=15% Similarity=0.131 Sum_probs=140.6
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 003891 524 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 601 (788)
Q Consensus 524 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~ 601 (788)
.+.++++.++++ .|..+.+++++..+.+..|+.+|+++|.+...+...+.+++.+++.|+. ++|.|+|. .+..
T Consensus 291 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~-~~V~f~G~----~~v~ 365 (475)
T cd03813 291 KEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLE-DNVKFTGF----QNVK 365 (475)
T ss_pred CCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCC-CeEEEcCC----ccHH
Confidence 445678888876 7889999999999999999999999997644556778889999999998 89999993 4566
Q ss_pred HhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchh--HHHhh-----hCCcccc--cCCHHHHHHHHHH
Q 003891 602 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTK-----VGLKHLI--AKNEDEYVQLALQ 671 (788)
Q Consensus 602 ~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~--~~l~~-----~gl~~~i--a~~~~~y~~~a~~ 671 (788)
..|+.+|+++-|+.. +.+++++|||++|+|||+- .+|+ .++.. +|-.+++ ..|++++++...+
T Consensus 366 ~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVat-------d~g~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ 438 (475)
T cd03813 366 EYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVAT-------DVGSCRELIEGADDEALGPAGEVVPPADPEALARAILR 438 (475)
T ss_pred HHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEEC-------CCCChHHHhcCCcccccCCceEEECCCCHHHHHHHHHH
Confidence 778889999999866 7799999999999999983 3332 12222 1334444 3589999999999
Q ss_pred HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 672 LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 672 l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
+.+|++.++.++++.++++.+. |+.+.++.++++.|+
T Consensus 439 ll~~~~~~~~~~~~a~~~v~~~--~s~~~~~~~y~~lY~ 475 (475)
T cd03813 439 LLKDPELRRAMGEAGRKRVERY--YTLERMIDSYRRLYL 475 (475)
T ss_pred HhcCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHhC
Confidence 9999999999999999887644 889999999999884
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.2e-13 Score=145.71 Aligned_cols=180 Identities=14% Similarity=0.147 Sum_probs=135.9
Q ss_pred CCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC-----HHHHHHHHHHHHHcCCCCCcEEEcC
Q 003891 520 PALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DSVRHRFLSTLEQLGLESLRVDLLP 592 (788)
Q Consensus 520 ~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~-----~~~~~~l~~~~~~~gi~~~rv~~~~ 592 (788)
.+++.+..++++++++ .|..+.++++|.++.+..|+.+|+++|.+... ....+.+++.+.+.| +++.|+|
T Consensus 187 ~~~~~~~~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~---~~v~~~G 263 (380)
T PRK15484 187 LNISPDETVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG---DRCIMLG 263 (380)
T ss_pred hCCCCCCeEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcC---CcEEEeC
Confidence 3455556677777765 89999999999999999999999999976321 123445555555554 5799999
Q ss_pred CcCCcHHHHHhcccccEeecCCCC--CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccc-c--cCCHHHHHH
Q 003891 593 LILLNHDHMQAYSLMDISLDTFPY--AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHL-I--AKNEDEYVQ 667 (788)
Q Consensus 593 ~~~~~~~~~~~~~~~Dv~Ld~~~~--~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~-i--a~~~~~y~~ 667 (788)
.++ .++....|+.+|+++-|+.+ +.+.+.+|||++|+|||+.....+.. ++ .-|..++ + ..|.+++.+
T Consensus 264 ~~~-~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg~~E-----iv-~~~~~G~~l~~~~d~~~la~ 336 (380)
T PRK15484 264 GQP-PEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGGITE-----FV-LEGITGYHLAEPMTSDSIIS 336 (380)
T ss_pred CCC-HHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCCCcHh-----hc-ccCCceEEEeCCCCHHHHHH
Confidence 986 68889999999999998864 45889999999999999843221111 11 1144444 3 358999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 003891 668 LALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 712 (788)
Q Consensus 668 ~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 712 (788)
...++.+|++. .+++++.++...+. |+++.+++++++.|.+.
T Consensus 337 ~I~~ll~d~~~-~~~~~~ar~~~~~~--fsw~~~a~~~~~~l~~~ 378 (380)
T PRK15484 337 DINRTLADPEL-TQIAEQAKDFVFSK--YSWEGVTQRFEEQIHNW 378 (380)
T ss_pred HHHHHHcCHHH-HHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHh
Confidence 99999999985 67888888776544 99999999999999764
|
|
| >cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.50 E-value=6e-13 Score=146.21 Aligned_cols=176 Identities=18% Similarity=0.187 Sum_probs=138.7
Q ss_pred CCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCc
Q 003891 520 PALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 597 (788)
Q Consensus 520 ~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~ 597 (788)
.+++++..++++++++ .|....++++|.++..+ ++.+|+++|.+ +....+++.+++.|+. ++|.|.|..+
T Consensus 191 ~~~~~~~~~il~~g~l~~~K~~~~li~a~~~l~~~-~~~~l~i~G~g----~~~~~~~~~~~~~~~~-~~v~~~g~~~-- 262 (371)
T cd04962 191 LGAPEGEKVLIHISNFRPVKRIDDVIRIFAKVRKE-VPARLLLVGDG----PERSPAERLARELGLQ-DDVLFLGKQD-- 262 (371)
T ss_pred cCCCCCCeEEEEecccccccCHHHHHHHHHHHHhc-CCceEEEEcCC----cCHHHHHHHHHHcCCC-ceEEEecCcc--
Confidence 3455667778888876 89999999999988765 56899999877 3456778888889997 8999999753
Q ss_pred HHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc--CCHHHHHHHHHHHhc
Q 003891 598 HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLAS 674 (788)
Q Consensus 598 ~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~y~~~a~~l~~ 674 (788)
+....|..+|+++-|+.+ +.|.+++|||++|+|||+.....+.. ++. -|..+++. .|.+++++....+.+
T Consensus 263 -~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~~~~e-----~i~-~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 263 -HVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVASNAGGIPE-----VVK-HGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred -cHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEeCCCCchh-----hhc-CCCceEEcCCCCHHHHHHHHHHHHh
Confidence 566778889999999976 66999999999999999854332222 111 13344444 389999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 003891 675 DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 712 (788)
Q Consensus 675 d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 712 (788)
|++.+..|+++.++...+. |+++.++.++++.|+++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~--fs~~~~~~~~~~~y~~~ 371 (371)
T cd04962 336 DDELWQEFSRAARNRAAER--FDSERIVPQYEALYRRL 371 (371)
T ss_pred CHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhC
Confidence 9999999999998875433 89999999999999863
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-10 Score=119.34 Aligned_cols=296 Identities=15% Similarity=0.016 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Q 003891 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM-YAEAYCNMGV 100 (788)
Q Consensus 22 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~-~~~~~~~la~ 100 (788)
..+.....-|..-+..|+|.+|++...+.-+..+...-++..-+....+.|+++.|-.++.++-+..++ ...+....+.
T Consensus 82 rra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrar 161 (400)
T COG3071 82 RRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRAR 161 (400)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 345566677888888999999999999988877777778888889999999999999999999988443 4567888999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHH-H--HHHHHH--
Q 003891 101 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD-A--MYNLGV-- 175 (788)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~--~~~la~-- 175 (788)
+....|++..|.....++++..|.++........+|.. .|++.+...+..+.-+..--+.+ . +-+.+.
T Consensus 162 lll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~-------~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~g 234 (400)
T COG3071 162 LLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIR-------LGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEG 234 (400)
T ss_pred HHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHH-------hccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999998776655555555 45888877777766654322211 1 111111
Q ss_pred HHHHcCChHHH---HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 003891 176 AYGEMLKFDMA---IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 252 (788)
Q Consensus 176 ~~~~~g~~~~A---~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 252 (788)
++.+..+-+.+ ..+++..-..-..++.....++.-+...|+.++|.+..+++++..-+.. ....++ ...-++..
T Consensus 235 lL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~ 311 (400)
T COG3071 235 LLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPE 311 (400)
T ss_pred HHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCch
Confidence 11111111111 1223222222233466666667777777777777777777776543322 111111 23456666
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHH
Q 003891 253 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 330 (788)
Q Consensus 253 eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~ 330 (788)
.=++..++.++..|+++..+..||.++.+.+.+.+|.++|+.+++..|+..+ ...++..+...|+.+++-+..++
T Consensus 312 ~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~---~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 312 PLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASD---YAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh---HHHHHHHHHHcCChHHHHHHHHH
Confidence 6677777777777777777777777777777777777777777777665433 23456666666666655554443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.6e-11 Score=131.88 Aligned_cols=296 Identities=15% Similarity=0.119 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 25 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 104 (788)
Q Consensus 25 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~ 104 (788)
+++.....++...|++++|++.+++..+.-.+....+-..|.++.++|++++|...|...++.+|++...+..+..+...
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhh
Confidence 44666778889999999999999998888889999999999999999999999999999999999999999999988844
Q ss_pred CC-----CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 105 RG-----DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ-GVAYYKKALYYNWHYADAMYNLGVAYG 178 (788)
Q Consensus 105 ~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~la~~~~ 178 (788)
.. +.+.-.+.|++.....|....... +...+. -| ..+.+ +..++...+.. .-+....++-.+|.
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~r-l~L~~~-~g------~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~ 154 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKYPRSDAPRR-LPLDFL-EG------DEFKERLDEYLRPQLRK--GVPSLFSNLKPLYK 154 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhCccccchhH-hhcccC-CH------HHHHHHHHHHHHHHHhc--CCchHHHHHHHHHc
Confidence 33 567778889888888887542211 110000 01 12322 33344444432 34455555555554
Q ss_pred HcCChHHHHHHHHHHHhc---------------CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 003891 179 EMLKFDMAIVFYELAFHF---------------NPHC--AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 241 (788)
Q Consensus 179 ~~g~~~~A~~~~~~al~~---------------~p~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 241 (788)
...+.+-...++...... .|.. ..+++.++..|...|++++|+++.+++|+..|..++.+...
T Consensus 155 d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~K 234 (517)
T PF12569_consen 155 DPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTK 234 (517)
T ss_pred ChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 333333222333322211 0111 24567778888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh-------hHHhHHHHhh
Q 003891 242 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN-------AGQNRLLAMN 314 (788)
Q Consensus 242 a~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~-------a~~~~lla~~ 314 (788)
|.++...|++.+|.+.++.+..++..+-.+....+..+.+.|+.++|.+.+....+-+-+... .|+..-.+.+
T Consensus 235 arilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a 314 (517)
T PF12569_consen 235 ARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEA 314 (517)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888877788888888888888888887776554421111 2222233555
Q ss_pred hccCCCchHHHHHHHH
Q 003891 315 YINEGHDDKLFEAHRD 330 (788)
Q Consensus 315 ~l~~g~~~~~~~~~~~ 330 (788)
|...|+...++.....
T Consensus 315 ~~r~~~~~~ALk~~~~ 330 (517)
T PF12569_consen 315 YLRQGDYGLALKRFHA 330 (517)
T ss_pred HHHHhhHHHHHHHHHH
Confidence 5566665555544333
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.2e-11 Score=147.02 Aligned_cols=282 Identities=13% Similarity=0.093 Sum_probs=130.4
Q ss_pred HHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Q 003891 33 SLKLAGNTQDGIQKYYEALKID-PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 111 (788)
Q Consensus 33 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A 111 (788)
.+...|+.+.|.+.+..+++.. ..+...+..+...|.+.|++++|.+.|++... .+...|..+...|.+.|++++|
T Consensus 297 a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A 373 (857)
T PLN03077 297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKA 373 (857)
T ss_pred HHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHH
Confidence 3344455555555555554432 22344555555555555555555555554321 2334455555555555555555
Q ss_pred HHHHHHHHhhC--CCcHHHHHHH----------------------------HHHHHHhhhhhhhcCCHHHHHHHHHHHHH
Q 003891 112 IACYERCLAVS--PNFEIAKNNM----------------------------AIALTDLGTKVKLEGDINQGVAYYKKALY 161 (788)
Q Consensus 112 ~~~~~~al~~~--p~~~~~~~~l----------------------------a~~l~~lg~~~~~~g~~~~A~~~~~~al~ 161 (788)
++.|++..+.. |+... +..+ ..++..+-..|.+.|++++|.+.|++..+
T Consensus 374 ~~lf~~M~~~g~~Pd~~t-~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 452 (857)
T PLN03077 374 LETYALMEQDNVSPDEIT-IASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452 (857)
T ss_pred HHHHHHHHHhCCCCCcee-HHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence 55555543322 32211 0000 11222333444455566666666555432
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHH-----------------------------------HH
Q 003891 162 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC-----------------------------------NN 206 (788)
Q Consensus 162 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-----------------------------------~~ 206 (788)
.+...|..+...|...|+.++|+..|++.....+.+...+ ..
T Consensus 453 ---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~na 529 (857)
T PLN03077 453 ---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA 529 (857)
T ss_pred ---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechH
Confidence 2334455555555566666666666655543211111111 12
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Q 003891 207 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGS 284 (788)
Q Consensus 207 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~--~p~~~~~~~~la~~~~~~g~ 284 (788)
+...|.+.|+.++|.+.|++. +.+...|..+...|.+.|+.++|++.|++..+. .|+ ...+..+-..+.+.|+
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGM 604 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcCh
Confidence 224444455555555555443 334445555555555555555555555555443 232 2334444445555555
Q ss_pred HHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHH
Q 003891 285 ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE 326 (788)
Q Consensus 285 ~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~ 326 (788)
.++|.++|+...+..+-.++....-.+...+...|..+++.+
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~ 646 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYN 646 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHH
Confidence 555555555554332222222222233334444555444443
|
|
| >cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-12 Score=141.79 Aligned_cols=315 Identities=15% Similarity=0.136 Sum_probs=186.9
Q ss_pred EeeccCCcccChhHHhhhhhhcccCCCceEEEEEeccccCChhhHHHHHHHhhhCCeEEEccCC--C----HHHHHHHHH
Q 003891 357 IGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGI--D----EKKVAAMVR 430 (788)
Q Consensus 357 iGyvS~df~~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~~~~~~~~~~~~~~~~--~----~~~~a~~i~ 430 (788)
|-++.+++..=-+...+..+.+.+...+++|++++...........+.. ....+..+... . ...+.+.++
T Consensus 2 Il~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
T cd03812 2 ILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYDDEIEK----LGGKIYYIPARKKNPLKYFKKLYKLIK 77 (358)
T ss_pred EEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCCcchHHHHHH----cCCeEEEecCCCccHHHHHHHHHHHHh
Confidence 4556665532234456666777777788999988876543222222222 11222222211 1 134566678
Q ss_pred hCCCcEEEeCCCCCCCCcccccc-cCCCCeEEec-ccCCCCCCCCCc----------cEEEecCCCCCcCc--cC----C
Q 003891 431 EDKIDILVELTGHTANNKLGMMA-CQPAPVQVTW-IGYPNTTGLPTI----------DYRITDSLADPPET--KQ----K 492 (788)
Q Consensus 431 ~d~idilvdl~g~t~~~~~~~~a-~r~Apvq~~~-~g~~~ttg~~~~----------Dy~i~d~~~~p~~~--~~----~ 492 (788)
..++||++-...... .-..+++ ....|+-+.+ .+...+...... -+..+|.++.+... +. .
T Consensus 78 ~~~~Dvv~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 156 (358)
T cd03812 78 KNKYDIVHVHGSSAS-GFILLAAKKAGVKVRIAHSHNTSDSHDKKKKILKYKVLRKLINRLATDYLACSEEAGKWLFGKV 156 (358)
T ss_pred cCCCCEEEEeCcchh-HHHHHHHhhCCCCeEEEEeccccccccccchhhHHHHHHHHHHhcCCEEEEcCHHHHHHHHhCC
Confidence 899999975443321 1111122 1234443332 111111110000 01112222222221 11 1
Q ss_pred CccceEEcCCCccc--cCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCH
Q 003891 493 HVEELIRLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCD 568 (788)
Q Consensus 493 ~~e~l~~lp~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~ 568 (788)
..+++..+|+..-. |.+.+............++.+++++++++ .|..+.+++++.++....|+.+++++|.+
T Consensus 157 ~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g---- 232 (358)
T cd03812 157 KNKKFKVIPNGIDLEKFIFNEEIRKKRRELGILEDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDG---- 232 (358)
T ss_pred CcccEEEEeccCcHHHcCCCchhhhHHHHcCCCCCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCC----
Confidence 23566666653210 11111110001112345677888888876 89999999999999999999999999977
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhH
Q 003891 569 SVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS 647 (788)
Q Consensus 569 ~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~ 647 (788)
+....+++.+++.|+. ++|.|.|. .++....|+.||+++-|+-+ +.+.+.+|||++|+|||+-.......
T Consensus 233 ~~~~~~~~~~~~~~~~-~~v~~~g~---~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~~~----- 303 (358)
T cd03812 233 ELEEEIKKKVKELGLE-DKVIFLGV---RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTITKEV----- 303 (358)
T ss_pred chHHHHHHHHHhcCCC-CcEEEecc---cCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcCCchhh-----
Confidence 5567788888889998 89999998 34677788999999999866 67999999999999999844332221
Q ss_pred HHhhhCCccccc-CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 003891 648 LLTKVGLKHLIA-KNEDEYVQLALQLASDVTALANLRMSLRDLM 690 (788)
Q Consensus 648 ~l~~~gl~~~ia-~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~ 690 (788)
++.. +..-+.. .+++++.+...++.+|++.++.++...+...
T Consensus 304 ~i~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~~~~~~ 346 (358)
T cd03812 304 DLTD-LVKFLSLDESPEIWAEEILKLKSEDRRERSSESIKKKGL 346 (358)
T ss_pred hhcc-CccEEeCCCCHHHHHHHHHHHHhCcchhhhhhhhhhccc
Confidence 1222 3333333 3569999999999999998888877665443
|
capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1). |
| >cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-13 Score=151.20 Aligned_cols=170 Identities=17% Similarity=0.152 Sum_probs=127.7
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC-----cEEEEecCCCCC--HHHHHHHHHHHHHcCCCCCcEEEcCCc
Q 003891 524 NGFITFGSFNNL--AKITPKVLQVWARILCAVPN-----SRLVVKCKPFCC--DSVRHRFLSTLEQLGLESLRVDLLPLI 594 (788)
Q Consensus 524 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~-----~~l~l~~~~~~~--~~~~~~l~~~~~~~gi~~~rv~~~~~~ 594 (788)
.+..+|++++++ .|.....+++|.++.+..|+ .+|+++|++... ....+.|++..+++|++ ++|.|+|.+
T Consensus 235 ~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~-~~V~f~g~v 313 (419)
T cd03806 235 TRENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLE-DKVEFVVNA 313 (419)
T ss_pred cCCcEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCC-CeEEEecCC
Confidence 345677788855 89999999999999988765 899999876432 24667888889999998 899999998
Q ss_pred CCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecC-CCccCccchhHHHh--hhCCcccccCCHHHHHHHHH
Q 003891 595 LLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMA-GSVHAHNVGVSLLT--KVGLKHLIAKNEDEYVQLAL 670 (788)
Q Consensus 595 ~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~-g~~~~~r~~~~~l~--~~gl~~~ia~~~~~y~~~a~ 670 (788)
+ .++....|+.+|++|-|+.. +.|.+.+|||++|+|||+.. |..... +.. .-|-.++++.|++++++...
T Consensus 314 ~-~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~-----iv~~~~~g~~G~l~~d~~~la~ai~ 387 (419)
T cd03806 314 P-FEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLLD-----IVVPWDGGPTGFLASTAEEYAEAIE 387 (419)
T ss_pred C-HHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCCchh-----eeeccCCCCceEEeCCHHHHHHHHH
Confidence 7 78999999999999998855 77999999999999999744 211111 111 02556677789999999999
Q ss_pred HHhcCHHH-HHHHHHHHHHHhhcCCCCChHHHHH
Q 003891 671 QLASDVTA-LANLRMSLRDLMSKSPVCDGQNFAL 703 (788)
Q Consensus 671 ~l~~d~~~-~~~~r~~~~~~~~~~~~~~~~~~~~ 703 (788)
++.++++. ++.+++. +.+.. ..|+.+.|.+
T Consensus 388 ~ll~~~~~~~~~~~~~-~~~~~--~~fs~~~f~~ 418 (419)
T cd03806 388 KILSLSEEERLRIRRA-ARSSV--KRFSDEEFER 418 (419)
T ss_pred HHHhCCHHHHHHHHHH-HHHHH--HhhCHHHhcc
Confidence 99997654 4444433 33333 3378887753
|
ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides. |
| >cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-12 Score=140.68 Aligned_cols=319 Identities=14% Similarity=0.082 Sum_probs=191.1
Q ss_pred eEeeccCCcccChhHHhhhhhhcccCCCceEEEEEeccccCChhhHHHHHH-HhhhCCeEEEc--cCCCHHHHHHHHHhC
Q 003891 356 VIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREK-VMKKGGIWRDI--YGIDEKKVAAMVRED 432 (788)
Q Consensus 356 riGyvS~df~~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~~-~~~~~~~~~~~--~~~~~~~~a~~i~~d 432 (788)
||.+++..+...-+...+..+.+.+...+++|.++................ ........... .......+.+.|+..
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRKE 80 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHhc
Confidence 456677766544455556667777777889999887665432211100000 00000000000 111235788889999
Q ss_pred CCcEEEeCCCCCCCCcccccccCC-CCeEEecccCCCCCC-------------CCCccEEEecCCCCCcCccCCC---cc
Q 003891 433 KIDILVELTGHTANNKLGMMACQP-APVQVTWIGYPNTTG-------------LPTIDYRITDSLADPPETKQKH---VE 495 (788)
Q Consensus 433 ~idilvdl~g~t~~~~~~~~a~r~-Apvq~~~~g~~~ttg-------------~~~~Dy~i~d~~~~p~~~~~~~---~e 495 (788)
++||++-... ....-+..+..+. .|+-+...+...... +...|.+++..-..-......| .+
T Consensus 81 ~~dii~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~ 159 (353)
T cd03811 81 KPDVVISHLT-TTPNVLALLAARLGTKLIVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPD 159 (353)
T ss_pred CCCEEEEcCc-cchhHHHHHHhhcCCceEEEEcCcchhhhccchhHHHHHHhhccccceEEEeccchhhhHHHhhcCCcc
Confidence 9999987655 2222222222221 344333333322211 1345666653222222223333 36
Q ss_pred ceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHH
Q 003891 496 ELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHR 573 (788)
Q Consensus 496 ~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~ 573 (788)
++..+|+..- ................+++.++|+++++. .|..+.++++|.++....|+.+|+++|.+ +....
T Consensus 160 ~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~----~~~~~ 234 (353)
T cd03811 160 KIEVIYNPID-IEEIRALAEEPLELGIPPDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDG----PLREE 234 (353)
T ss_pred ccEEecCCcC-hhhcCcccchhhhcCCCCCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCC----ccHHH
Confidence 7777775421 11110000000012445677888888876 79999999999999988899999999876 45566
Q ss_pred HHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhh
Q 003891 574 FLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV 652 (788)
Q Consensus 574 l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~ 652 (788)
+.+.....|+. ++|.|.|..+ +....|+.+|+++.|+.+ +.+++++|||++|+|||+........ ++. -
T Consensus 235 ~~~~~~~~~~~-~~v~~~g~~~---~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~~~~e-----~i~-~ 304 (353)
T cd03811 235 LEALAKELGLA-DRVHFLGFQS---NPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCPGPRE-----ILE-D 304 (353)
T ss_pred HHHHHHhcCCC-ccEEEecccC---CHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCCChHH-----Hhc-C
Confidence 77888888987 8999999854 466788889999999987 66899999999999999843322211 111 1
Q ss_pred CCccccc--CCHHHH---HHHHHHHhcCHHHHHHHHHHHHHHh
Q 003891 653 GLKHLIA--KNEDEY---VQLALQLASDVTALANLRMSLRDLM 690 (788)
Q Consensus 653 gl~~~ia--~~~~~y---~~~a~~l~~d~~~~~~~r~~~~~~~ 690 (788)
|-.+++. .+.+++ ++....+..|++.+++++...++..
T Consensus 305 ~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 347 (353)
T cd03811 305 GENGLLVPVGDEAALAAAALALLDLLLDPELRERLAAAARERV 347 (353)
T ss_pred CCceEEECCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 3334443 456666 7788888889988888888655544
|
WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core. |
| >cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=145.22 Aligned_cols=204 Identities=16% Similarity=0.118 Sum_probs=140.1
Q ss_pred CCccceEEcCCCccc--cCCCCCCCC-CCCCCCCCCCCeEEEecCC---CCcCCHHHHHHHHHHHhHcCCcEEEEecCCC
Q 003891 492 KHVEELIRLPECFLC--YTPSPEAGP-VCPTPALTNGFITFGSFNN---LAKITPKVLQVWARILCAVPNSRLVVKCKPF 565 (788)
Q Consensus 492 ~~~e~l~~lp~~~~~--~~~~~~~~~-~~~~~~~~~~~~~f~~~~~---~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~ 565 (788)
.|.+++..+|+..-. |.|.+.... ......++.+.++++.++| ..|..+.+++++.++.+..|+.+|+++|++.
T Consensus 174 ~~~~ki~vI~ngvd~~~f~~~~~~~~~~~~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~~~~~~~~lvivG~~~ 253 (396)
T cd03818 174 ELRSRISVIHDGIDTDRLRPDPQARLRLPNGRVLTPGDEVITFVARNLEPYRGFHVFMRALPRLLRARPDARVVIVGGDG 253 (396)
T ss_pred hhccceEEeCCCccccccCCCchhhhcccccccCCCCCeEEEEECCCcccccCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 345788888864311 222221111 1111223445556666665 3899999999999999999999999998631
Q ss_pred C--------CHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCC-CCCCchhHHHHhhhCCceeecC
Q 003891 566 C--------CDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF-PYAGTTTTCESLYMGVPCVTMA 636 (788)
Q Consensus 566 ~--------~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~-~~~g~~t~~eal~~GvPvvt~~ 636 (788)
. .+..++.+.+.+.... ..++|.|+|.++ .++....|+.+|+++-|+ |++.+.+++|||+||+|||+-.
T Consensus 254 ~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~V~f~G~v~-~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~ 331 (396)
T cd03818 254 VSYGAPPPDGESWKQHMLDELGGRL-DLSRVHFLGRVP-YDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSD 331 (396)
T ss_pred cccCCCCCCcccHHHHHHHHhhccc-CcceEEEeCCCC-HHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcC
Confidence 0 1113334433332211 348999999987 688899999999998877 5577889999999999999844
Q ss_pred CCccCccchhHHHhhhCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 003891 637 GSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 705 (788)
Q Consensus 637 g~~~~~r~~~~~l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 705 (788)
...... ++. -|..++++ .|++++++...++.+|++.+.+|+++.|+++.+ .|+++.+++++
T Consensus 332 ~~g~~e-----~i~-~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~--~fs~~~~~~~~ 394 (396)
T cd03818 332 TAPVRE-----VIT-DGENGLLVDFFDPDALAAAVIELLDDPARRARLRRAARRTALR--YDLLSVCLPRQ 394 (396)
T ss_pred CCCchh-----hcc-cCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--hccHHHHHHHH
Confidence 322222 111 14445553 489999999999999999999999999988765 47888777665
|
ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II). |
| >cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=143.37 Aligned_cols=173 Identities=16% Similarity=0.193 Sum_probs=132.9
Q ss_pred CCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcH
Q 003891 521 ALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 598 (788)
Q Consensus 521 ~~~~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~ 598 (788)
+++++.++|..+++ ..|..+.+++++.++....|+.+|+++|.| +..+.+++.+++.|+. ++|.|.|.. .
T Consensus 183 ~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g----~~~~~~~~~~~~~~~~-~~v~~~g~~---~ 254 (360)
T cd04951 183 GVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDG----PLRATLERLIKALGLS-NRVKLLGLR---D 254 (360)
T ss_pred CcCCCCEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCC----CcHHHHHHHHHhcCCC-CcEEEeccc---c
Confidence 45566677777775 489999999999999999999999999977 4567788888888987 899999974 4
Q ss_pred HHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHh-cCH
Q 003891 599 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLA-SDV 676 (788)
Q Consensus 599 ~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~-~d~ 676 (788)
+....|+.+|+++-|+.+ +.|.+++|||++|+|||+-....+.. ++...|. -+...|++++++...++. .++
T Consensus 255 ~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e-----~i~~~g~-~~~~~~~~~~~~~i~~ll~~~~ 328 (360)
T cd04951 255 DIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVATDAGGVRE-----VVGDSGL-IVPISDPEALANKIDEILKMSG 328 (360)
T ss_pred cHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEecCCChhh-----EecCCce-EeCCCCHHHHHHHHHHHHhCCH
Confidence 567788889999999876 55899999999999999844322221 1111111 122478999999999998 566
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 677 TALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 677 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
+.+..+++. +....+ .|+.+.+++++++.|+
T Consensus 329 ~~~~~~~~~-~~~~~~--~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 329 EERDIIGAR-RERIVK--KFSINSIVQQWLTLYT 359 (360)
T ss_pred HHHHHHHHH-HHHHHH--hcCHHHHHHHHHHHhh
Confidence 677777666 655543 3899999999999986
|
In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-11 Score=143.94 Aligned_cols=219 Identities=14% Similarity=0.074 Sum_probs=171.4
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 003891 52 KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 131 (788)
Q Consensus 52 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 131 (788)
..+|.+..++..+...+...+++++|+..++.+++..|+....|+.+|.++.+.+++.++... .++...+.+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~----- 97 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL----- 97 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc-----
Confidence 347889999999999999999999999999999999999999999999999999998777666 5555554432
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 003891 132 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 211 (788)
Q Consensus 132 la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 211 (788)
++ .+++++...+...+++..+++.+|.+|-++|+.++|...|+++++.+|+++.+++++|..|
T Consensus 98 ----------------~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ 160 (906)
T PRK14720 98 ----------------KW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSY 160 (906)
T ss_pred ----------------ch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 34 5555555555556677778888888888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--------------------
Q 003891 212 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA-------------------- 271 (788)
Q Consensus 212 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~-------------------- 271 (788)
... +.++|+.++.+|+.. +...++|.++.++.++.+..+|++.+.
T Consensus 161 ae~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~ 225 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGL 225 (906)
T ss_pred HHh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHH
Confidence 888 888888888888765 556667777777777777777766433
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhH
Q 003891 272 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 309 (788)
Q Consensus 272 ~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~ 309 (788)
+.-+-..|...+++++++.+++.+++++|+|..++..+
T Consensus 226 ~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l 263 (906)
T PRK14720 226 LEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREEL 263 (906)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHH
Confidence 22233677778888888888888888888887776664
|
|
| >cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.1e-12 Score=139.74 Aligned_cols=175 Identities=17% Similarity=0.128 Sum_probs=138.0
Q ss_pred CCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCc
Q 003891 520 PALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 597 (788)
Q Consensus 520 ~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~ 597 (788)
+..+++.++|++++++ .|..+.+++++.++.+..|+.+|+++|.+. ......+.....+.|+. ++|.|.|.++ .
T Consensus 197 ~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~~-~~v~~~g~~~-~ 272 (375)
T cd03821 197 FPILPDKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDE--GGYRAELKQIAAALGLE-DRVTFTGMLY-G 272 (375)
T ss_pred ccCCCCCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCCC--cchHHHHHHHHHhcCcc-ceEEEcCCCC-h
Confidence 3456677788888866 899999999999999999999999998652 23344455555788997 8999999987 6
Q ss_pred HHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCH
Q 003891 598 HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDV 676 (788)
Q Consensus 598 ~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~ 676 (788)
++....|..+|+++-|+.+ +.|++.+|||++|+|||+-....+.. ++.. +..-++..+.+++++...++.+|+
T Consensus 273 ~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~i~~l~~~~ 346 (375)
T cd03821 273 EDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKVPWQE-----LIEY-GCGWVVDDDVDALAAALRRALELP 346 (375)
T ss_pred HHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCCCHHH-----Hhhc-CceEEeCCChHHHHHHHHHHHhCH
Confidence 7888999999999999876 77999999999999999855432222 2222 333344566799999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 003891 677 TALANLRMSLRDLMSKSPVCDGQNFALGLE 706 (788)
Q Consensus 677 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e 706 (788)
+.++.++++.++.+.+. |+++.+++.++
T Consensus 347 ~~~~~~~~~~~~~~~~~--~s~~~~~~~~~ 374 (375)
T cd03821 347 QRLKAMGENGRALVEER--FSWTAIAQQLL 374 (375)
T ss_pred HHHHHHHHHHHHHHHHh--cCHHHHHHHhh
Confidence 99999999998876544 89999888775
|
Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide. |
| >cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.1e-12 Score=137.08 Aligned_cols=327 Identities=17% Similarity=0.120 Sum_probs=199.9
Q ss_pred eEeeccCCcccChhHHhhhhhhcccCCCceEEEEEeccccCChhh-HHHHHHHhhhCCeEEEccCC-CHHHHHHHHHhCC
Q 003891 356 VIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKT-IRFREKVMKKGGIWRDIYGI-DEKKVAAMVREDK 433 (788)
Q Consensus 356 riGyvS~df~~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t-~~~r~~~~~~~~~~~~~~~~-~~~~~a~~i~~d~ 433 (788)
+|.|++..|-.- ...++......+.+.+++|.+++..+..+... ...........-..+.+..+ ....+...++..+
T Consensus 1 ki~~~~~~~~~~-~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T cd03799 1 KIAYLVKEFPRL-SETFILREILALEAAGHEVEIFSLRPPEDTLVHPEDRAELARTRYLARSLALLAQALVLARELRRLG 79 (355)
T ss_pred CEEEECCCCCCc-chHHHHHHHHHHHhCCCeEEEEEecCcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 366777766332 34556667777777889999887665432211 00000000000000001111 1234666778889
Q ss_pred CcEEEeCCCCCCCCcccccccCC--CCeEEecccCCCCCC---------CCCccEEEecCCCCCcCccC---CCccceEE
Q 003891 434 IDILVELTGHTANNKLGMMACQP--APVQVTWIGYPNTTG---------LPTIDYRITDSLADPPETKQ---KHVEELIR 499 (788)
Q Consensus 434 idilvdl~g~t~~~~~~~~a~r~--Apvq~~~~g~~~ttg---------~~~~Dy~i~d~~~~p~~~~~---~~~e~l~~ 499 (788)
+||+.--.++.. .....+..+. -|+-++..|+..... +...|++++..-..-..... ...+++..
T Consensus 80 ~Dii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~s~~~~~~l~~~~~~~~~~~~v 158 (355)
T cd03799 80 IDHIHAHFGTTP-ATVAMLASRLGGIPYSFTAHGKDIFRSPDAIDLDEKLARADFVVAISEYNRQQLIRLLGCDPDKIHV 158 (355)
T ss_pred CCEEEECCCCch-HHHHHHHHHhcCCCEEEEEecccccccCchHHHHHHHhhCCEEEECCHHHHHHHHHhcCCCcccEEE
Confidence 999975333321 1222233333 344444444332211 23467776543221111222 23566777
Q ss_pred cCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHH
Q 003891 500 LPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLST 577 (788)
Q Consensus 500 lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~ 577 (788)
+|++. ..... .+. . .....+.++++++++. .|..+.+++++.++....|+.+|.++|.+ +....+.+.
T Consensus 159 i~~~~-d~~~~--~~~-~--~~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~----~~~~~~~~~ 228 (355)
T cd03799 159 VHCGV-DLERF--PPR-P--PPPPGEPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDG----PLRDELEAL 228 (355)
T ss_pred EeCCc-CHHHc--CCc-c--ccccCCCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECC----ccHHHHHHH
Confidence 77532 11100 000 0 1223444556666654 89999999999998888899999999876 455677788
Q ss_pred HHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-------CCchhHHHHhhhCCceeecCCCccCccchhHHHh
Q 003891 578 LEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-------AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT 650 (788)
Q Consensus 578 ~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-------~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~ 650 (788)
+++.|+. ++|.|.|.++ .++....|+.+|++|-|+.+ +.+++.+|||++|+|||+........ ++.
T Consensus 229 ~~~~~~~-~~v~~~g~~~-~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~-----~i~ 301 (355)
T cd03799 229 IAELGLE-DRVTLLGAKS-QEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIPE-----LVE 301 (355)
T ss_pred HHHcCCC-CeEEECCcCC-hHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCcch-----hhh
Confidence 8888887 8999999987 68999999999999999864 66889999999999999854332222 222
Q ss_pred hhCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHH
Q 003891 651 KVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALG 704 (788)
Q Consensus 651 ~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 704 (788)
. |-.+++. .|.+++++....+..|++.+..++++.++.+.+. |+.+..++.
T Consensus 302 ~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~--~s~~~~~~~ 354 (355)
T cd03799 302 D-GETGLLVPPGDPEALADAIERLLDDPELRREMGEAGRARVEEE--FDIRKQAAR 354 (355)
T ss_pred C-CCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh--cCHHHHhhc
Confidence 2 3233443 3899999999999999999999999998877644 777776654
|
amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3e-12 Score=126.25 Aligned_cols=153 Identities=20% Similarity=0.205 Sum_probs=131.0
Q ss_pred hhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 003891 141 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 220 (788)
Q Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA 220 (788)
-.|...|+++......++.. +|.. -+...++.++++..++++++.+|++...|..+|.+|...|++++|
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 35666778877654442221 1111 112367789999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003891 221 VECYQMALSIKPNFSQSLNNLGVVY-TVQGK--MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 297 (788)
Q Consensus 221 ~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 297 (788)
+..|+++++++|+++.++..+|.++ ...|+ +++|.+.++++++.+|++..+++.+|..+...|++++|+.+|+++++
T Consensus 93 ~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 93 LLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999975 67787 59999999999999999999999999999999999999999999999
Q ss_pred hCCCChh
Q 003891 298 IDPDSRN 304 (788)
Q Consensus 298 l~p~~~~ 304 (788)
++|.+.+
T Consensus 173 l~~~~~~ 179 (198)
T PRK10370 173 LNSPRVN 179 (198)
T ss_pred hCCCCcc
Confidence 9987654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-11 Score=118.32 Aligned_cols=178 Identities=16% Similarity=0.112 Sum_probs=164.2
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 003891 139 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 218 (788)
Q Consensus 139 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 218 (788)
........++.+-|..++++.....|.+..+....|..+...|++++|+++|+..++-+|.+..++-..-.+...+|+.-
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l 137 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNL 137 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcH
Confidence 33334456799999999999999999999999999999999999999999999999999999999998888899999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHH
Q 003891 219 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG---SISLAIDAYEQC 295 (788)
Q Consensus 219 eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g---~~~eA~~~~~~a 295 (788)
+|++.+.+.++..+.+.++|..++.+|...|+|++|.-++++.+-+.|.++..+..+|.+++-+| +++-|.++|.++
T Consensus 138 ~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 138 EAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998877 577899999999
Q ss_pred HhhCCCChhhHHhHHHHhhhc
Q 003891 296 LKIDPDSRNAGQNRLLAMNYI 316 (788)
Q Consensus 296 l~l~p~~~~a~~~~lla~~~l 316 (788)
++++|.+..+.+...++...+
T Consensus 218 lkl~~~~~ral~GI~lc~~~l 238 (289)
T KOG3060|consen 218 LKLNPKNLRALFGIYLCGSAL 238 (289)
T ss_pred HHhChHhHHHHHHHHHHHHHH
Confidence 999999888888877766555
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-11 Score=141.62 Aligned_cols=246 Identities=15% Similarity=0.147 Sum_probs=164.4
Q ss_pred cCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 003891 12 ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY 91 (788)
Q Consensus 12 ~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~ 91 (788)
.+|.+.++ +..+...+...+++++|++.++.+++.+|+....|+.+|.++.+.++++++... .++...+.+
T Consensus 26 ~~p~n~~a-------~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~ 96 (906)
T PRK14720 26 YSLSKFKE-------LDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN 96 (906)
T ss_pred CCcchHHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc
Confidence 45666666 666677778889999999999999999999999999999999999988777666 555544443
Q ss_pred H-------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHH
Q 003891 92 A-------------------EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 152 (788)
Q Consensus 92 ~-------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A 152 (788)
. .+++.+|.||-++|+.++|...|+++++.+|++..+..++|..|.. . ++++|
T Consensus 97 ~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae-------~-dL~KA 168 (906)
T PRK14720 97 LKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE-------E-DKEKA 168 (906)
T ss_pred cchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-------h-hHHHH
Confidence 3 7788888888888888888888888888888887655555544433 4 78888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003891 153 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 232 (788)
Q Consensus 153 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 232 (788)
++++.+++.. +...+++.++.+++.+.+..+|++.+.+..+-......-.+..+
T Consensus 169 ~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~------------ 222 (906)
T PRK14720 169 ITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRL------------ 222 (906)
T ss_pred HHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchh------------
Confidence 8888888754 55666788888888888887777655433322111111001111
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------------------CCHHHHHHHH
Q 003891 233 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA--------------------GSISLAIDAY 292 (788)
Q Consensus 233 ~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~--------------------g~~~eA~~~~ 292 (788)
...+.-+-..|...+++++++.+++.+++.+|++..+...++.+|... .++..|+.-|
T Consensus 223 --~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~f 300 (906)
T PRK14720 223 --VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADF 300 (906)
T ss_pred --HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHH
Confidence 112222334455555666666666666666666666666666655521 2345566666
Q ss_pred HHHHhhCCCC
Q 003891 293 EQCLKIDPDS 302 (788)
Q Consensus 293 ~~al~l~p~~ 302 (788)
++.+..++.+
T Consensus 301 ek~i~f~~G~ 310 (906)
T PRK14720 301 EKNIVFDTGN 310 (906)
T ss_pred HHHeeecCCC
Confidence 6666655554
|
|
| >cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-12 Score=143.39 Aligned_cols=173 Identities=18% Similarity=0.205 Sum_probs=136.3
Q ss_pred CCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcH
Q 003891 521 ALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 598 (788)
Q Consensus 521 ~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~ 598 (788)
.+.++.++++++++. .|..+.++++|.++....|+.+|++.|.+ +....+.+...+.++. ++|.|.|.++ .+
T Consensus 197 ~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~----~~~~~~~~~~~~~~~~-~~v~~~g~~~-~~ 270 (374)
T cd03817 197 GIPEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDG----PEREELEELARELGLA-DRVIFTGFVP-RE 270 (374)
T ss_pred CCCCCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCC----chHHHHHHHHHHcCCC-CcEEEeccCC-hH
Confidence 345566777887765 78899999999999988899999999876 5567788888888987 8999999987 68
Q ss_pred HHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCC-HHHHHHHHHHHhcCH
Q 003891 599 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKN-EDEYVQLALQLASDV 676 (788)
Q Consensus 599 ~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~-~~~y~~~a~~l~~d~ 676 (788)
+....|+.+|+++.|+.+ ++|++++|||++|+|||+.....+..-+ .-|-.+++..+ .+++++...++.+|+
T Consensus 271 ~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~~~~~~i------~~~~~g~~~~~~~~~~~~~i~~l~~~~ 344 (374)
T cd03817 271 ELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAVDAPGLPDLV------ADGENGFLFPPGDEALAEALLRLLQDP 344 (374)
T ss_pred HHHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEEeCCCChhhhe------ecCceeEEeCCCCHHHHHHHHHHHhCh
Confidence 899999999999999966 6789999999999999985543332211 12334444433 339999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 003891 677 TALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 711 (788)
Q Consensus 677 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 711 (788)
+.++.++++.++...+. + +.+.+++.|++
T Consensus 345 ~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~ 373 (374)
T cd03817 345 ELRRRLSKNAEESAEKF---S---FAKKVEKLYEE 373 (374)
T ss_pred HHHHHHHHHHHHHHHHH---H---HHHHHHHHHhc
Confidence 99999999988776532 2 77888888765
|
UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol. |
| >PRK10307 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.1e-12 Score=142.68 Aligned_cols=205 Identities=17% Similarity=0.150 Sum_probs=151.5
Q ss_pred ccceEEcCCCccc--cCCCCCCC--CCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC
Q 003891 494 VEELIRLPECFLC--YTPSPEAG--PVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC 567 (788)
Q Consensus 494 ~e~l~~lp~~~~~--~~~~~~~~--~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~ 567 (788)
.+++..+|+..-. |.|.+... ..+...+++++.++++.++++ .|....+++++.++ ...|+.+|+++|.|
T Consensus 193 ~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~kg~~~li~a~~~l-~~~~~~~l~ivG~g--- 268 (412)
T PRK10307 193 AEKVIFFPNWSEVARFQPVADADVDALRAQLGLPDGKKIVLYSGNIGEKQGLELVIDAARRL-RDRPDLIFVICGQG--- 268 (412)
T ss_pred cccEEEECCCcCHhhcCCCCccchHHHHHHcCCCCCCEEEEEcCccccccCHHHHHHHHHHh-ccCCCeEEEEECCC---
Confidence 3567788864311 22221110 111224566777888888876 88899999998766 55689999999987
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCC-----chhHHHHhhhCCceeecCCCccCc
Q 003891 568 DSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAG-----TTTTCESLYMGVPCVTMAGSVHAH 642 (788)
Q Consensus 568 ~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g-----~~t~~eal~~GvPvvt~~g~~~~~ 642 (788)
+.++.+++.++++|++ +|.|+|.++ .++....|+.+|+++-|+...+ ++...|||++|+|||+-....
T Consensus 269 -~~~~~l~~~~~~~~l~--~v~f~G~~~-~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g--- 341 (412)
T PRK10307 269 -GGKARLEKMAQCRGLP--NVHFLPLQP-YDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPG--- 341 (412)
T ss_pred -hhHHHHHHHHHHcCCC--ceEEeCCCC-HHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCC---
Confidence 5678888888999985 699999987 6888899999999998886543 345799999999999843110
Q ss_pred cchhHHHhhhCCcccc--cCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 003891 643 NVGVSLLTKVGLKHLI--AKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 714 (788)
Q Consensus 643 r~~~~~l~~~gl~~~i--a~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 714 (788)
.....+.. + .+++ ..|.+++++...+|.+|++.++.|+++.++.+.+. |+.+..++++++.|+++..
T Consensus 342 ~~~~~~i~--~-~G~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~--fs~~~~~~~~~~~~~~~~~ 410 (412)
T PRK10307 342 TELGQLVE--G-IGVCVEPESVEALVAAIAALARQALLRPKLGTVAREYAERT--LDKENVLRQFIADIRGLVA 410 (412)
T ss_pred chHHHHHh--C-CcEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHhc
Confidence 00011222 3 3344 36899999999999999999999999999887544 8999999999999998753
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.3e-10 Score=118.86 Aligned_cols=286 Identities=16% Similarity=0.118 Sum_probs=192.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER------------------- 88 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~------------------- 88 (788)
+..+.+.++.+..++|+..++ ..++.+.......|.+++++++|++|+..|+..++.+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 467788899999999999988 4566667788999999999999999999999885421
Q ss_pred -----------CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhhhhhhhcCC
Q 003891 89 -----------PM-YAEAYCNMGVIYKNRGDLESAIACYERCLAV--------SPNFEIAKNNMAIALTDLGTKVKLEGD 148 (788)
Q Consensus 89 -----------p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~l~~lg~~~~~~g~ 148 (788)
|. ..+.+++.+.++...|+|.+|++.+++++++ +.+..+....+..+..+++.++..+|+
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 11 3567899999999999999999999999544 233355666778888899999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHH-------------------------------------------------HHHHHHHHHH
Q 003891 149 INQGVAYYKKALYYNWHYADA-------------------------------------------------MYNLGVAYGE 179 (788)
Q Consensus 149 ~~~A~~~~~~al~~~p~~~~~-------------------------------------------------~~~la~~~~~ 179 (788)
.++|...|...++.++.+... +.+.+.+.+.
T Consensus 240 t~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999886654311 1122222222
Q ss_pred cC----------------------------------ChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 180 ML----------------------------------KFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECY 224 (788)
Q Consensus 180 ~g----------------------------------~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~ 224 (788)
.+ .+.+|.+++....+.+|.. ..+...++.+...+|+++.|++.+
T Consensus 320 tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 22 2233333333333344444 445555566666666666666666
Q ss_pred HHHHhh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 225 QMALSI-------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-------NPTYAEAYNNLGVLYRDAGSISLAID 290 (788)
Q Consensus 225 ~~al~~-------~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~-------~p~~~~~~~~la~~~~~~g~~~eA~~ 290 (788)
...+.. ....+.+-..+-..+...++.+.|...+.+++.. .+.....+-.++..-.+.|+-++|..
T Consensus 400 ~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred HHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 622211 1122233333334444555444444444444432 22222345556777778899999999
Q ss_pred HHHHHHhhCCCChhhHHhHHHHhhhc
Q 003891 291 AYEQCLKIDPDSRNAGQNRLLAMNYI 316 (788)
Q Consensus 291 ~~~~al~l~p~~~~a~~~~lla~~~l 316 (788)
.+++.++.+|++.++...+..+.+++
T Consensus 480 ~leel~k~n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 480 LLEELVKFNPNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHhc
Confidence 99999999999999988877776665
|
|
| >cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.9e-12 Score=139.66 Aligned_cols=325 Identities=17% Similarity=0.112 Sum_probs=197.8
Q ss_pred ChhHHhhhhhhcccCCCceEEEEEeccccCChhhHHHHH--------H-Hhh--hCCeEEEccCCCHHHHHHHHH--hCC
Q 003891 367 HSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFRE--------K-VMK--KGGIWRDIYGIDEKKVAAMVR--EDK 433 (788)
Q Consensus 367 H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~--------~-~~~--~~~~~~~~~~~~~~~~a~~i~--~d~ 433 (788)
...+.++..+...+...+++|++++.............. . ... ....+..........+...|+ ..+
T Consensus 14 ~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 93 (377)
T cd03798 14 GGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAARALLKLLKLKRFR 93 (377)
T ss_pred chHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhHHHHHHHHHHHHhcccCC
Confidence 344556667777777788999988765433221110000 0 000 000000000111355778888 999
Q ss_pred CcEEEeCCCCCCCCcccccccCC--CCeEEecccCCCCCC-------------CCCccEEEecCCCCCcCccCC--Cccc
Q 003891 434 IDILVELTGHTANNKLGMMACQP--APVQVTWIGYPNTTG-------------LPTIDYRITDSLADPPETKQK--HVEE 496 (788)
Q Consensus 434 idilvdl~g~t~~~~~~~~a~r~--Apvq~~~~g~~~ttg-------------~~~~Dy~i~d~~~~p~~~~~~--~~e~ 496 (788)
+||++-......+-... ...|. .|+-+...+...... +...|++++..-......... ...+
T Consensus 94 ~dii~~~~~~~~~~~~~-~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~ 172 (377)
T cd03798 94 PDLIHAHFAYPDGFAAA-LLKRKLGIPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAVSEALADELKALGIDPEK 172 (377)
T ss_pred CCEEEEeccchHHHHHH-HHHHhcCCCEEEEeecchhcccCchhhHHHHHHHHHhcCCeEEeCCHHHHHHHHHhcCCCCc
Confidence 99987653333222211 22222 354444433322111 223577665432211111222 4566
Q ss_pred eEEcCCCccccCCCCCCCCCC---CCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHH
Q 003891 497 LIRLPECFLCYTPSPEAGPVC---PTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR 571 (788)
Q Consensus 497 l~~lp~~~~~~~~~~~~~~~~---~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~ 571 (788)
+..+|++. .+....+... ......++.++++++++. .|....+++++..+....|+.+|.+.|.+ ...
T Consensus 173 ~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~----~~~ 245 (377)
T cd03798 173 VTVIPNGV---DTERFSPADRAEARKLGLPEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDG----PLR 245 (377)
T ss_pred eEEcCCCc---CcccCCCcchHHHHhccCCCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCC----cch
Confidence 77777542 1111100000 012344566788888865 78889999999999988899999999876 445
Q ss_pred HHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHh
Q 003891 572 HRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT 650 (788)
Q Consensus 572 ~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~ 650 (788)
..+.+.++..++. ++|.+.|.++ .++....|..||+++-|+.+ +.+++++|||++|+|||+.....+.. ++.
T Consensus 246 ~~~~~~~~~~~~~-~~v~~~g~~~-~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~~~~-----~~~ 318 (377)
T cd03798 246 EALEALAAELGLE-DRVTFLGAVP-HEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDVGGIPE-----IIT 318 (377)
T ss_pred HHHHHHHHhcCCc-ceEEEeCCCC-HHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecCCChHH-----Hhc
Confidence 6677777788887 8999999987 68899999999999999876 77899999999999999844322211 111
Q ss_pred hhCCcccc--cCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 003891 651 KVGLKHLI--AKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 711 (788)
Q Consensus 651 ~~gl~~~i--a~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 711 (788)
. +..+++ ..|.+++++...++.+|++. .+..+.+....+ .|+++.+++.+.+.|++
T Consensus 319 ~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~--~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~ 376 (377)
T cd03798 319 D-GENGLLVPPGDPEALAEAILRLLADPWL--RLGRAARRRVAE--RFSWENVAERLLELYRE 376 (377)
T ss_pred C-CcceeEECCCCHHHHHHHHHHHhcCcHH--HHhHHHHHHHHH--HhhHHHHHHHHHHHHhh
Confidence 1 222333 45899999999999999886 444444444433 37899999999988875
|
wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-11 Score=121.28 Aligned_cols=125 Identities=18% Similarity=0.150 Sum_probs=114.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 003891 146 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY-KDRDN--LDKAVE 222 (788)
Q Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~eA~~ 222 (788)
.++.++++..++++++.+|++.+.|..+|.+|...|++++|+..|+++++++|++..++..+|.++ ...|+ +++|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 457789999999999999999999999999999999999999999999999999999999999975 67777 599999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 003891 223 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 270 (788)
Q Consensus 223 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~ 270 (788)
.++++++.+|++..++..+|..+...|++++|+.+++++++..|.+..
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999999999999999999877543
|
|
| >TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.7e-12 Score=142.07 Aligned_cols=175 Identities=13% Similarity=0.020 Sum_probs=127.5
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHH--HhHcCCcEEEEecCCCCCH-------HHHHHHHHHHHHcCCCCCcEEEc
Q 003891 523 TNGFITFGSFNNL--AKITPKVLQVWARI--LCAVPNSRLVVKCKPFCCD-------SVRHRFLSTLEQLGLESLRVDLL 591 (788)
Q Consensus 523 ~~~~~~f~~~~~~--~K~~~~~~~~~~~i--l~~~p~~~l~l~~~~~~~~-------~~~~~l~~~~~~~gi~~~rv~~~ 591 (788)
+.+.+++++++|+ .|..+.++++++++ +...++.+ +++|++-..+ ...+++.....+.|+. ++|.|.
T Consensus 245 ~~~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~~~~l~-li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~-~~V~f~ 322 (439)
T TIGR02472 245 DPEKPPILAISRPDRRKNIPSLVEAYGRSPKLQEMANLV-LVLGCRDDIRKMESQQREVLQKVLLLIDRYDLY-GKVAYP 322 (439)
T ss_pred ccCCcEEEEEcCCcccCCHHHHHHHHHhChhhhhhccEE-EEeCCccccccccHHHHHHHHHHHHHHHHcCCC-ceEEec
Confidence 3445567788876 89999999999864 23334433 2445442111 1233456667888998 899999
Q ss_pred CCcCCcHHHHHhcccc----cEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhH-HHhhhCCcccc--cCCHH
Q 003891 592 PLILLNHDHMQAYSLM----DISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS-LLTKVGLKHLI--AKNED 663 (788)
Q Consensus 592 ~~~~~~~~~~~~~~~~----Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~-~l~~~gl~~~i--a~~~~ 663 (788)
|.++ .++....|+.+ |+|+-|+.+ +.|.+++|||++|+|||+ +++++. -+-.-|-.+++ ..|++
T Consensus 323 g~~~-~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~-------s~~gg~~eiv~~~~~G~lv~~~d~~ 394 (439)
T TIGR02472 323 KHHR-PDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVA-------TDDGGPRDIIANCRNGLLVDVLDLE 394 (439)
T ss_pred CCCC-HHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEE-------eCCCCcHHHhcCCCcEEEeCCCCHH
Confidence 9876 67888888766 999999877 669999999999999998 555410 01111333444 35899
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 003891 664 EYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 709 (788)
Q Consensus 664 ~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 709 (788)
++.+...++.+|++.+++|+++.++++.+. |+++.+++++++.+
T Consensus 395 ~la~~i~~ll~~~~~~~~~~~~a~~~~~~~--fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 395 AIASALEDALSDSSQWQLWSRNGIEGVRRH--YSWDAHVEKYLRIL 438 (439)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHh
Confidence 999999999999999999999999887544 89999999988765
|
This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase. |
| >PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.3e-12 Score=140.88 Aligned_cols=325 Identities=14% Similarity=0.105 Sum_probs=185.2
Q ss_pred eEeeccCCccc-ChhHHhhhhhhcccCCC--ceEEEEEeccccCChhhHHHHHHHhhhCCeEE--Ecc--C--CCHHHHH
Q 003891 356 VIGYVSPDYFT-HSVSYFIEAPLVYHDYQ--NYKVVVYSAVVKADAKTIRFREKVMKKGGIWR--DIY--G--IDEKKVA 426 (788)
Q Consensus 356 riGyvS~df~~-H~v~~~~~~~l~~~dr~--~fev~~Y~~~~~~D~~t~~~r~~~~~~~~~~~--~~~--~--~~~~~~a 426 (788)
||.++...+.. --+..++..+...+... ++++++++.....+.. ..+. .... ..+. .+. . .....+.
T Consensus 2 kI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~--~~~~-~~~~-~~~~~~~~~~~~~~~~~~~l~ 77 (359)
T PRK09922 2 KIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKMDKA--WLKE-IKYA-QSFSNIKLSFLRRAKHVYNFS 77 (359)
T ss_pred eeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCChH--HHHh-cchh-cccccchhhhhcccHHHHHHH
Confidence 56666543321 22445566667777766 7999988765443221 1111 0000 0000 011 0 1124577
Q ss_pred HHHHhCCCcEEEeCCCCCCCCcccccccCC--CCe-EEeccc--CCCCCC-----CCCccEEEecCCCCCcCccC--CCc
Q 003891 427 AMVREDKIDILVELTGHTANNKLGMMACQP--APV-QVTWIG--YPNTTG-----LPTIDYRITDSLADPPETKQ--KHV 494 (788)
Q Consensus 427 ~~i~~d~idilvdl~g~t~~~~~~~~a~r~--Apv-q~~~~g--~~~ttg-----~~~~Dy~i~d~~~~p~~~~~--~~~ 494 (788)
+.|++.++||++-.+... .....++.+. .|+ .++|.. .+.... +...|++++-.-..-..... .-.
T Consensus 78 ~~l~~~~~Dii~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~d~~i~~S~~~~~~~~~~~~~~ 155 (359)
T PRK09922 78 KWLKETQPDIVICIDVIS--CLYANKARKKSGKQFKIFSWPHFSLDHKKHAECKKITCADYHLAISSGIKEQMMARGISA 155 (359)
T ss_pred HHHHhcCCCEEEEcCHHH--HHHHHHHHHHhCCCCeEEEEecCcccccchhhhhhhhcCCEEEEcCHHHHHHHHHcCCCH
Confidence 889999999997542211 1222222221 122 244321 111111 12334444321110000011 113
Q ss_pred cceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCC----CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHH
Q 003891 495 EELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL----AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSV 570 (788)
Q Consensus 495 e~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~----~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~ 570 (788)
+++..+|+.. ... .... +.+ ..++.++|++++++ .|....+++++.++. ++.+|+++|.| +.
T Consensus 156 ~ki~vi~N~i-d~~--~~~~---~~~-~~~~~~~i~~~Grl~~~~~k~~~~l~~a~~~~~---~~~~l~ivG~g----~~ 221 (359)
T PRK09922 156 QRISVIYNPV-EIK--TIII---PPP-ERDKPAVFLYVGRLKFEGQKNVKELFDGLSQTT---GEWQLHIIGDG----SD 221 (359)
T ss_pred HHEEEEcCCC-CHH--HccC---CCc-ccCCCcEEEEEEEEecccCcCHHHHHHHHHhhC---CCeEEEEEeCC----cc
Confidence 5566666532 100 0000 011 11235677788875 377778888877653 47899999987 55
Q ss_pred HHHHHHHHHHcCCCCCcEEEcCCcCCc-HHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecC-CCccCccchhH
Q 003891 571 RHRFLSTLEQLGLESLRVDLLPLILLN-HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMA-GSVHAHNVGVS 647 (788)
Q Consensus 571 ~~~l~~~~~~~gi~~~rv~~~~~~~~~-~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~-g~~~~~r~~~~ 647 (788)
++.+++..++.|+. ++|.|.|.+... ++....|..+|+++-|+.+ +.|.+++|||++|+|||+.. ..... .
T Consensus 222 ~~~l~~~~~~~~l~-~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g~~-----e 295 (359)
T PRK09922 222 FEKCKAYSRELGIE-QRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSGPR-----D 295 (359)
T ss_pred HHHHHHHHHHcCCC-CeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEEeCCCCChH-----H
Confidence 77888888999998 899999987543 4556678999999999977 66999999999999999844 22111 1
Q ss_pred HHhhhCCcccc--cCCHHHHHHHHHHHhcCHHHH--HHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 003891 648 LLTKVGLKHLI--AKNEDEYVQLALQLASDVTAL--ANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 714 (788)
Q Consensus 648 ~l~~~gl~~~i--a~~~~~y~~~a~~l~~d~~~~--~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 714 (788)
++ .-|..+++ ..|.+++++....+.+|++.+ .++++.++ -|..+.|+++|-++|..+-+
T Consensus 296 iv-~~~~~G~lv~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 358 (359)
T PRK09922 296 II-KPGLNGELYTPGNIDEFVGKLNKVISGEVKYQHDAIPNSIE-------RFYEVLYFKNLNNALFSKLQ 358 (359)
T ss_pred Hc-cCCCceEEECCCCHHHHHHHHHHHHhCcccCCHHHHHHHHH-------HhhHHHHHHHHHHHHHHHhc
Confidence 12 12444444 468999999999999999843 33333322 15678899999998887653
|
|
| >TIGR02918 accessory Sec system glycosylation protein GtfA | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.2e-12 Score=140.26 Aligned_cols=165 Identities=8% Similarity=0.021 Sum_probs=131.7
Q ss_pred eEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc
Q 003891 527 ITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 604 (788)
Q Consensus 527 ~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~ 604 (788)
.++++++|+ .|..+.+++++.++.+..|+.+|.++|.| +.++.+++.+++.|+. ++|.|.|... ....|
T Consensus 320 ~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G----~~~~~l~~~i~~~~l~-~~V~f~G~~~----~~~~~ 390 (500)
T TIGR02918 320 FSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEG----GEKQKLQKIINENQAQ-DYIHLKGHRN----LSEVY 390 (500)
T ss_pred eEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECc----hhHHHHHHHHHHcCCC-CeEEEcCCCC----HHHHH
Confidence 456666665 89999999999999999999999999987 5678899999999998 8999999753 44567
Q ss_pred ccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccch--hHHHhhhCCcccccC------C----HHHHHHHHHH
Q 003891 605 SLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVG--VSLLTKVGLKHLIAK------N----EDEYVQLALQ 671 (788)
Q Consensus 605 ~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~--~~~l~~~gl~~~ia~------~----~~~y~~~a~~ 671 (788)
+.+|+++-|+-+ +.|.|++|||++|+|||+ ++++ ..=+..-|..+++.+ | .+++++..++
T Consensus 391 ~~adv~v~pS~~Egfgl~~lEAma~G~PVI~-------~dv~~G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ 463 (500)
T TIGR02918 391 KDYELYLSASTSEGFGLTLMEAVGSGLGMIG-------FDVNYGNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVE 463 (500)
T ss_pred HhCCEEEEcCccccccHHHHHHHHhCCCEEE-------ecCCCCCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHH
Confidence 789999999976 669999999999999998 4432 111223366666654 2 7788888999
Q ss_pred HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 003891 672 LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 711 (788)
Q Consensus 672 l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 711 (788)
|.+ ++.+.+|+++.++.. .-|+.+..++.+++.+++
T Consensus 464 ll~-~~~~~~~~~~a~~~a---~~fs~~~v~~~w~~ll~~ 499 (500)
T TIGR02918 464 YFN-SNDIDAFHEYSYQIA---EGFLTANIIEKWKKLVRE 499 (500)
T ss_pred HhC-hHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHhh
Confidence 985 557889999988753 338999999999988865
|
Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-09 Score=111.94 Aligned_cols=286 Identities=14% Similarity=0.115 Sum_probs=162.3
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|...|++||..+-.+... +...+.+-++..+...|...+++++..-|.-...|+....+-..+|+...|.+.|
T Consensus 92 ARSv~ERALdvd~r~itL-------WlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 92 ARSVFERALDVDYRNITL-------WLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHhcccccchH-------HHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 567788888888777776 5555666777788888888888888888887778887777777788888888888
Q ss_pred HHHHHhCCCC--------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHH
Q 003891 82 EKAALERPMY--------------------------------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 129 (788)
Q Consensus 82 ~kal~~~p~~--------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 129 (788)
++-++..|+. ...|...+..-.+.|+...|...|++|++...++...-
T Consensus 165 erW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e 244 (677)
T KOG1915|consen 165 ERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAE 244 (677)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHH
Confidence 8777766651 22344444444555566666666666655544322110
Q ss_pred HHHHHHHHHhhhhhhhcCCHHHHHHH--------------------------------------------HHHHHHhCCC
Q 003891 130 NNMAIALTDLGTKVKLEGDINQGVAY--------------------------------------------YKKALYYNWH 165 (788)
Q Consensus 130 ~~la~~l~~lg~~~~~~g~~~~A~~~--------------------------------------------~~~al~~~p~ 165 (788)
. ++...+.....++.++.|... |++.++.+|.
T Consensus 245 ~----lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 245 I----LFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 0 001111111111222222222 2333334555
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH---------HHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCCC-
Q 003891 166 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA---------EACNNLGV-IYKDRDNLDKAVECYQMALSIKPNF- 234 (788)
Q Consensus 166 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~la~-~~~~~g~~~eA~~~~~~al~~~p~~- 234 (788)
+.++|+..-.+....|+.+.-.+.|++|+...|... ..|.+.+. .-....+.+.+.+.|+.++++-|..
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkk 400 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKK 400 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCccc
Confidence 556666666666666666666666666665544321 11112111 0112345555555555555554432
Q ss_pred ---HHHHHHHHHH---------------------------------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003891 235 ---SQSLNNLGVV---------------------------------YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 278 (788)
Q Consensus 235 ---~~~~~~la~~---------------------------------~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~ 278 (788)
+.+|...|.. -.++++++....+|++.++..|.+..+|...|.+
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaEl 480 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAEL 480 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHH
Confidence 2233333333 3445556666666666666666666666666666
Q ss_pred HHHcCCHHHHHHHHHHHHhh
Q 003891 279 YRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 279 ~~~~g~~~eA~~~~~~al~l 298 (788)
-..+|+.+.|...|+-|++.
T Consensus 481 E~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 481 ETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHhhhHHHHHHHHHHHhcC
Confidence 66666666666666666654
|
|
| >TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.5e-12 Score=138.49 Aligned_cols=181 Identities=13% Similarity=0.095 Sum_probs=138.7
Q ss_pred CCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcC-CcCC
Q 003891 520 PALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLP-LILL 596 (788)
Q Consensus 520 ~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~-~~~~ 596 (788)
.+++++.++|+.++++ .|..+.+++++.++. ++.+|+++|++...+...+.+++.+...+...++++|.+ .++
T Consensus 195 ~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~---~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 270 (388)
T TIGR02149 195 YGIDRSRPYILFVGRITRQKGVPHLLDAVHYIP---KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLP- 270 (388)
T ss_pred hCCCCCceEEEEEcccccccCHHHHHHHHHHHh---hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCC-
Confidence 3456677788888877 789999999988774 567888877664555567788888888888656788764 555
Q ss_pred cHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc--CCH------HHHHH
Q 003891 597 NHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNE------DEYVQ 667 (788)
Q Consensus 597 ~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~------~~y~~ 667 (788)
.++....|+.+|++|-|+.+ +.|.+.+|||++|+|||+.....+.. ++. -|..+++. .|. +++++
T Consensus 271 ~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~~~~e-----~i~-~~~~G~~~~~~~~~~~~~~~~l~~ 344 (388)
T TIGR02149 271 KEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATGGIPE-----VVV-DGETGFLVPPDNSDADGFQAELAK 344 (388)
T ss_pred HHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCCCCHHH-----Hhh-CCCceEEcCCCCCcccchHHHHHH
Confidence 68899999999999999977 66899999999999999843221111 111 13333343 344 78999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 003891 668 LALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 712 (788)
Q Consensus 668 ~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 712 (788)
...++.+|++.++.|+++.++...+. |+++.+++++.+.|+++
T Consensus 345 ~i~~l~~~~~~~~~~~~~a~~~~~~~--~s~~~~~~~~~~~y~~~ 387 (388)
T TIGR02149 345 AINILLADPELAKKMGIAGRKRAEEE--FSWGSIAKKTVEMYRKV 387 (388)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhh
Confidence 99999999999999999988876544 99999999999999876
|
This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor. |
| >cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.39 E-value=5e-12 Score=140.13 Aligned_cols=175 Identities=21% Similarity=0.171 Sum_probs=137.2
Q ss_pred CCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHc---CCcEEEEecCCCCC----HHHHHHHHHHHHH-cCCCCCcEEE
Q 003891 521 ALTNGFITFGSFNNL--AKITPKVLQVWARILCAV---PNSRLVVKCKPFCC----DSVRHRFLSTLEQ-LGLESLRVDL 590 (788)
Q Consensus 521 ~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~---p~~~l~l~~~~~~~----~~~~~~l~~~~~~-~gi~~~rv~~ 590 (788)
..+++.++|++++++ .|..+.+++++.++.... |+.+|+++|++... ....+.+++.+++ .|++ ++|.|
T Consensus 206 ~~~~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~-~~V~f 284 (392)
T cd03805 206 IPKSGKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLE-DQVIF 284 (392)
T ss_pred ccCCCceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCC-ceEEE
Confidence 345667888888876 899999999999999887 89999999876321 1234678888888 8998 99999
Q ss_pred cCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcc-cccCCHHHHHHH
Q 003891 591 LPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKH-LIAKNEDEYVQL 668 (788)
Q Consensus 591 ~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~-~ia~~~~~y~~~ 668 (788)
.|.++ .++....|..+|++|-|+.+ +.|.+.+|||++|+|||+........ ++.. |-.+ ++..|++++++.
T Consensus 285 ~g~~~-~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~~~e-----~i~~-~~~g~~~~~~~~~~a~~ 357 (392)
T cd03805 285 LPSIS-DSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSGGPLE-----TVVD-GETGFLCEPTPEEFAEA 357 (392)
T ss_pred eCCCC-hHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCCCcHH-----Hhcc-CCceEEeCCCHHHHHHH
Confidence 99988 67778899999999988766 56899999999999999844322222 1221 2233 345689999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 003891 669 ALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 705 (788)
Q Consensus 669 a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 705 (788)
...+..|++.+..++++.++.+.+. |+++.++++|
T Consensus 358 i~~l~~~~~~~~~~~~~a~~~~~~~--~s~~~~~~~~ 392 (392)
T cd03805 358 MLKLANDPDLADRMGAAGRKRVKEK--FSTEAFAERL 392 (392)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHh--cCHHHHhhhC
Confidence 9999999999999999998877544 8888887653
|
ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.8e-11 Score=116.76 Aligned_cols=176 Identities=23% Similarity=0.224 Sum_probs=126.0
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 003891 111 AIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 190 (788)
Q Consensus 111 A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 190 (788)
+...+-+....+|++..+ .+++..+.. .|+-+++..+..++...+|.+......+|......|++.+|+..+
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~-------~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~ 123 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYL-------RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVL 123 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHh-------cccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHH
Confidence 444455555556665544 333333333 446666666666666666777666666777777777777777777
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 003891 191 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 270 (788)
Q Consensus 191 ~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~ 270 (788)
+++....|+++++|..+|.+|.+.|++++|...|.+++++.|+++.+..|+|..|.-.|+++.|..++..+....+.+..
T Consensus 124 rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~ 203 (257)
T COG5010 124 RKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR 203 (257)
T ss_pred HHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH
Confidence 77777777777777777777777777777777777777777777777777777777778888887777777777777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 271 AYNNLGVLYRDAGSISLAIDAYEQ 294 (788)
Q Consensus 271 ~~~~la~~~~~~g~~~eA~~~~~~ 294 (788)
+..+++.+...+|++++|...-.+
T Consensus 204 v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 204 VRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHhhcCChHHHHhhccc
Confidence 777777777778887777765544
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-10 Score=112.28 Aligned_cols=184 Identities=19% Similarity=0.138 Sum_probs=123.1
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHH
Q 003891 89 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 168 (788)
Q Consensus 89 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 168 (788)
++....+-....+....|+.+.|..++++.....|++.......+..+ ...|++++|+++|+..++.+|.+..
T Consensus 49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~l-------Ea~~~~~~A~e~y~~lL~ddpt~~v 121 (289)
T KOG3060|consen 49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLL-------EATGNYKEAIEYYESLLEDDPTDTV 121 (289)
T ss_pred chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHH-------HHhhchhhHHHHHHHHhccCcchhH
Confidence 334445555555666666666777777666666666654433333332 2345677777777777777776666
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 248 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 248 (788)
.+...-.+...+|+.-+|++.+...++..+.+.++|..++.+|...|+|++|.-||++.+-+.|.++..+..+|.+++-+
T Consensus 122 ~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~ 201 (289)
T KOG3060|consen 122 IRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQ 201 (289)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 66666666667777777777777777777777777777777777777777777777777777777777777777777665
Q ss_pred C---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003891 249 G---KMDAAAEMIEKAIAANPTYAEAYNNLGVLY 279 (788)
Q Consensus 249 g---~~~eA~~~l~kal~~~p~~~~~~~~la~~~ 279 (788)
| ++.-|.++|.++++++|.+..+++.+-.+.
T Consensus 202 gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 202 GGAENLELARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred hhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 5 456677777777777776666666554443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-10 Score=115.19 Aligned_cols=291 Identities=16% Similarity=0.098 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------hCC--
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL--------------ERP-- 89 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--------------~~p-- 89 (788)
+-..+|.+++..|+|++|+..|.-+.+.+.-+.+.+.+++.+++.+|.|.+|.....++-+ ++.
T Consensus 59 ~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk 138 (557)
T KOG3785|consen 59 LQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEK 138 (557)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHH
Confidence 3556788999999999999999999988777889999999999999999999998877621 111
Q ss_pred ----------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHH
Q 003891 90 ----------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 159 (788)
Q Consensus 90 ----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~a 159 (788)
+..+-...++.+.+..-.|++|++.|++.+.-+|+.......++.+++. ..-++-+.+.+.--
T Consensus 139 ~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyK-------lDYydvsqevl~vY 211 (557)
T KOG3785|consen 139 RILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYK-------LDYYDVSQEVLKVY 211 (557)
T ss_pred HHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHh-------cchhhhHHHHHHHH
Confidence 1123345567777777889999999999999888876554455555444 45677777777777
Q ss_pred HHhCCCCHHHHHHHHHHHHHc--CC----------------hHHHHHHHHH----------HHhcCCC----CHHHHHHH
Q 003891 160 LYYNWHYADAMYNLGVAYGEM--LK----------------FDMAIVFYEL----------AFHFNPH----CAEACNNL 207 (788)
Q Consensus 160 l~~~p~~~~~~~~la~~~~~~--g~----------------~~~A~~~~~~----------al~~~p~----~~~~~~~l 207 (788)
+...|+..-+...++...++. |+ |+.+..+++. +++.-|. -+++..++
T Consensus 212 L~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL 291 (557)
T KOG3785|consen 212 LRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNL 291 (557)
T ss_pred HHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhh
Confidence 777777766655555444332 11 1111111111 1111121 25566667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----------------------------------------
Q 003891 208 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV---------------------------------------- 247 (788)
Q Consensus 208 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~---------------------------------------- 247 (788)
...|.++++.++|+...+. ++|..+.-+...|.+...
T Consensus 292 ~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 292 IIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred eeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 7777777777777666543 355555544444444444
Q ss_pred ---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHH
Q 003891 248 ---QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 324 (788)
Q Consensus 248 ---~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~ 324 (788)
..++++-+.+++..-...-++....+++++++...|++.+|.+.|-+.-..+-.+. ..+..+++.+|+..+..+-+
T Consensus 369 fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~-~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNK-ILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhh-HHHHHHHHHHHHhcCCchHH
Confidence 44455555555555445556666778999999999999999999987654332232 33445688889888887766
Q ss_pred HHH
Q 003891 325 FEA 327 (788)
Q Consensus 325 ~~~ 327 (788)
|+.
T Consensus 448 W~~ 450 (557)
T KOG3785|consen 448 WDM 450 (557)
T ss_pred HHH
Confidence 654
|
|
| >cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.6e-12 Score=135.65 Aligned_cols=314 Identities=12% Similarity=0.048 Sum_probs=181.3
Q ss_pred HhhhhhhcccCCCceEEEEEeccccCChhhHHHHHHHhhhCCeEEEcc--CCCHHHHH-HHHHhCCCcEEEeCCCCCCCC
Q 003891 371 YFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIY--GIDEKKVA-AMVREDKIDILVELTGHTANN 447 (788)
Q Consensus 371 ~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~~~~~~~~~~~~~~--~~~~~~~a-~~i~~d~idilvdl~g~t~~~ 447 (788)
.++..+.....+.+++|.+++......................+..+. ..+..-.. -.+...++||++--.......
T Consensus 18 ~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~ 97 (357)
T cd03795 18 QVIRDLAEGLAARGIEVAVLCASPEPKGRDEERNGHRVIRAPSLLNVASTPFSPSFFKQLKKLAKKADVIHLHFPNPLAD 97 (357)
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCcchhhhccCceEEEeecccccccccccHHHHHHHHhcCCCCCEEEEecCcchHH
Confidence 445566677777789999887764322111100000000000011111 11111111 115678999987433222222
Q ss_pred cccccccCCCCeEEecccCCCCCC-------------CCCccEEEecCCCCCcC--ccCCCccceEEcCCCccccCCCCC
Q 003891 448 KLGMMACQPAPVQVTWIGYPNTTG-------------LPTIDYRITDSLADPPE--TKQKHVEELIRLPECFLCYTPSPE 512 (788)
Q Consensus 448 ~~~~~a~r~Apvq~~~~g~~~ttg-------------~~~~Dy~i~d~~~~p~~--~~~~~~e~l~~lp~~~~~~~~~~~ 512 (788)
....+..+..|+-++|-+...... +...|.+|+..-..-.. ....+.+++..+|++.-.-...+.
T Consensus 98 ~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~~~~~~~~~~i~~gi~~~~~~~~ 177 (357)
T cd03795 98 LALLLLPRKKPVVVHWHSDIVKQKLLLKLYRPLQRRFLRRADAIVATSPNYAETSPVLRRFRDKVRVIPLGLDPARYPRP 177 (357)
T ss_pred HHHHHhccCceEEEEEcChhhccchhhhhhhHHHHHHHHhcCEEEeCcHHHHHHHHHhcCCccceEEecCCCChhhcCCc
Confidence 222222234565555543222211 12245555421100000 112344778888865321000000
Q ss_pred CCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEE
Q 003891 513 AGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDL 590 (788)
Q Consensus 513 ~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~ 590 (788)
..........+.+.++++++++. .|....+++++.++. +.+|+++|.| +....+.+.+++.+.. ++|.|
T Consensus 178 ~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~----~~~l~i~G~g----~~~~~~~~~~~~~~~~-~~V~~ 248 (357)
T cd03795 178 DALEEAIWRRAAGRPFFLFVGRLVYYKGLDVLLEAAAALP----DAPLVIVGEG----PLEAELEALAAALGLL-DRVRF 248 (357)
T ss_pred chhhhHhhcCCCCCcEEEEecccccccCHHHHHHHHHhcc----CcEEEEEeCC----hhHHHHHHHHHhcCCc-ceEEE
Confidence 00000012234556677777765 888888888877665 7899999877 5666777777788988 89999
Q ss_pred cCCcCCcHHHHHhcccccEeecCCC---CCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc--CCHHHH
Q 003891 591 LPLILLNHDHMQAYSLMDISLDTFP---YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEY 665 (788)
Q Consensus 591 ~~~~~~~~~~~~~~~~~Dv~Ld~~~---~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~y 665 (788)
.|.++ .++....|+.||+++-|+. .+.|.+++|||++|+|||+-....... .+..-|-.+++. .|.+++
T Consensus 249 ~g~v~-~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~-----~i~~~~~~g~~~~~~d~~~~ 322 (357)
T cd03795 249 LGRLD-DEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGS-----YVNLHGVTGLVVPPGDPAAL 322 (357)
T ss_pred cCCCC-HHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchh-----HHhhCCCceEEeCCCCHHHH
Confidence 99998 6788899999999998874 366889999999999999843221111 111113344443 589999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHH
Q 003891 666 VQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNF 701 (788)
Q Consensus 666 ~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~ 701 (788)
++....+.+|++.++.++++.++.+.+. |+.+.+
T Consensus 323 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~--~s~~~~ 356 (357)
T cd03795 323 AEAIRRLLEDPELRERLGEAARERAEEE--FTADRM 356 (357)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHh--cchHhh
Confidence 9999999999999999999999887543 666554
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.4e-12 Score=137.30 Aligned_cols=162 Identities=17% Similarity=0.176 Sum_probs=126.1
Q ss_pred CeEEEecCC--CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 003891 526 FITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 603 (788)
Q Consensus 526 ~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 603 (788)
..+++++++ ..|..+.+++++.++....|+.+|.++|.+ +....+....+..|+. ++|.|.|.. .+....
T Consensus 204 ~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g----~~~~~~~~~~~~~~~~-~~v~~~g~~---~~~~~~ 275 (372)
T cd04949 204 PHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYG----DEEEKLKELIEELGLE-DYVFLKGYT---RDLDEV 275 (372)
T ss_pred CCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeC----chHHHHHHHHHHcCCc-ceEEEcCCC---CCHHHH
Confidence 345555665 489999999999999999999999999977 3456667777888997 899999953 467778
Q ss_pred cccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC--CHHHHHHHHHHHhcCHHHHH
Q 003891 604 YSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK--NEDEYVQLALQLASDVTALA 680 (788)
Q Consensus 604 ~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~--~~~~y~~~a~~l~~d~~~~~ 680 (788)
|+.+|++++|+.+ +.|.+.+|||++|+|||+..... |..-+..-|..+++.+ |.+++++....+.+|++.++
T Consensus 276 ~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~-----g~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~ 350 (372)
T cd04949 276 YQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY-----GPSEIIEDGENGYLVPKGDIEALAEAIIELLNDPKLLQ 350 (372)
T ss_pred HhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC-----CcHHHcccCCCceEeCCCcHHHHHHHHHHHHcCHHHHH
Confidence 8889999999987 67999999999999999843110 1111222255666665 99999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCChHHHHH
Q 003891 681 NLRMSLRDLMSKSPVCDGQNFAL 703 (788)
Q Consensus 681 ~~r~~~~~~~~~~~~~~~~~~~~ 703 (788)
.++++.++.. + -|+.+.+++
T Consensus 351 ~~~~~a~~~~-~--~~s~~~~~~ 370 (372)
T cd04949 351 KFSEAAYENA-E--RYSEENVWE 370 (372)
T ss_pred HHHHHHHHHH-H--HhhHHHHHh
Confidence 9999988763 2 266666554
|
In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-11 Score=113.70 Aligned_cols=119 Identities=14% Similarity=0.147 Sum_probs=99.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003891 188 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 267 (788)
Q Consensus 188 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 267 (788)
+.+++++..+|++......+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhH
Q 003891 268 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 268 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
++..++.+|.++...|++++|+..|+++++++|++....
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 888888888888888888888888888888888776643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PLN02846 digalactosyldiacylglycerol synthase | Back alignment and domain information |
|---|
Probab=99.37 E-value=7e-12 Score=137.68 Aligned_cols=203 Identities=11% Similarity=0.000 Sum_probs=139.4
Q ss_pred ecCCCCCcCccCCCccceEEcCCCccc---cCCCCCCCCCCCCCCCCCCC--eEEEecCCC--CcCCHHHHHHHHHHHhH
Q 003891 480 TDSLADPPETKQKHVEELIRLPECFLC---YTPSPEAGPVCPTPALTNGF--ITFGSFNNL--AKITPKVLQVWARILCA 552 (788)
Q Consensus 480 ~d~~~~p~~~~~~~~e~l~~lp~~~~~---~~~~~~~~~~~~~~~~~~~~--~~f~~~~~~--~K~~~~~~~~~~~il~~ 552 (788)
+|.++.|......+.+..+..++ ++. |.|.... ....+. +++. .+++.++|+ .|..+.+++++.++.+.
T Consensus 181 ~d~vi~pS~~~~~l~~~~i~~v~-GVd~~~f~~~~~~--~~~~~~-~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~~ 256 (462)
T PLN02846 181 CHKVIRLSAATQDYPRSIICNVH-GVNPKFLEIGKLK--LEQQKN-GEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQKE 256 (462)
T ss_pred cCEEEccCHHHHHHhhCEEecCc-eechhhcCCCccc--HhhhcC-CCCCcceEEEEEecCcccCCHHHHHHHHHHHHhh
Confidence 45566665544445555555442 332 2332211 111111 2332 346677877 99999999999999998
Q ss_pred cCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCc
Q 003891 553 VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP 631 (788)
Q Consensus 553 ~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvP 631 (788)
.|+.+|+|+|+| +.++.|++.+.+.|++ .++ |.|... .++ .|..+|||+-|+.+ +.|++++|||+||+|
T Consensus 257 ~~~~~l~ivGdG----p~~~~L~~~a~~l~l~-~~v-f~G~~~-~~~---~~~~~DvFv~pS~~Et~g~v~lEAmA~G~P 326 (462)
T PLN02846 257 LSGLEVDLYGSG----EDSDEVKAAAEKLELD-VRV-YPGRDH-ADP---LFHDYKVFLNPSTTDVVCTTTAEALAMGKI 326 (462)
T ss_pred CCCeEEEEECCC----ccHHHHHHHHHhcCCc-EEE-ECCCCC-HHH---HHHhCCEEEECCCcccchHHHHHHHHcCCc
Confidence 999999999998 7889999999999987 555 888643 443 55557999999988 779999999999999
Q ss_pred eeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 003891 632 CVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 711 (788)
Q Consensus 632 vvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 711 (788)
||+..... ..++.. |-..+...|.+++++....+..++. ..++...++ .|+++..+++|++.|+-
T Consensus 327 VVa~~~~~------~~~v~~-~~ng~~~~~~~~~a~ai~~~l~~~~--~~~~~~a~~------~~SWe~~~~~l~~~~~~ 391 (462)
T PLN02846 327 VVCANHPS------NEFFKQ-FPNCRTYDDGKGFVRATLKALAEEP--APLTDAQRH------ELSWEAATERFLRVADL 391 (462)
T ss_pred EEEecCCC------cceeec-CCceEecCCHHHHHHHHHHHHccCc--hhHHHHHHH------hCCHHHHHHHHHHHhcc
Confidence 99854221 122222 5555667899999999998887542 222333221 48899999988888863
|
|
| >PLN02939 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.4e-11 Score=140.55 Aligned_cols=179 Identities=11% Similarity=0.021 Sum_probs=132.4
Q ss_pred CCCCC---CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCc
Q 003891 520 PALTN---GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLI 594 (788)
Q Consensus 520 ~~~~~---~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~ 594 (788)
.|++. +.++||+++|+ .|..+.+++++.+++. ++.+|+|+|.|. .......++....++|+. ++|.|.+..
T Consensus 770 lGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~--~dvqLVIvGdGp-~~~~e~eL~~La~~l~l~-drV~FlG~~ 845 (977)
T PLN02939 770 LGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAE--LGGQFVLLGSSP-VPHIQREFEGIADQFQSN-NNIRLILKY 845 (977)
T ss_pred hCCCcccccceEEEEeecCCcccChHHHHHHHHHHhh--cCCEEEEEeCCC-cHHHHHHHHHHHHHcCCC-CeEEEEecc
Confidence 45653 56789999987 8999999999998885 688999998762 123456788888889987 899999886
Q ss_pred CCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhH----------HHhhhCCcccc--cCC
Q 003891 595 LLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS----------LLTKVGLKHLI--AKN 661 (788)
Q Consensus 595 ~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~----------~l~~~gl~~~i--a~~ 661 (788)
. .......|..+|+||-|+-| +.|.|.+|||++|+|+|+ +++|+- ....-|..+++ ..|
T Consensus 846 d-e~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVV-------s~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D 917 (977)
T PLN02939 846 D-EALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIV-------RKTGGLNDSVFDFDDETIPVELRNGFTFLTPD 917 (977)
T ss_pred C-HHHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEE-------ecCCCCcceeecCCccccccCCCceEEecCCC
Confidence 5 23334688999999999988 779999999999988776 444410 00000223333 247
Q ss_pred HHHHHHHHHHHh----cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 003891 662 EDEYVQLALQLA----SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 715 (788)
Q Consensus 662 ~~~y~~~a~~l~----~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 715 (788)
++++.+...++. .|++.+.+|+.+. +. ..|+++.+++++++.|+.+..+
T Consensus 918 ~eaLa~AL~rAL~~~~~dpe~~~~L~~~a---m~--~dFSWe~~A~qYeeLY~~ll~~ 970 (977)
T PLN02939 918 EQGLNSALERAFNYYKRKPEVWKQLVQKD---MN--IDFSWDSSASQYEELYQRAVAR 970 (977)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHH---HH--hcCCHHHHHHHHHHHHHHHHHh
Confidence 888776665544 4898888887643 22 3499999999999999999865
|
|
| >cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.2e-11 Score=128.45 Aligned_cols=169 Identities=17% Similarity=0.139 Sum_probs=127.7
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 003891 523 TNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 600 (788)
Q Consensus 523 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~ 600 (788)
+++.++|+.+++. .|..+.+++++.++.+..|+.+|+++|.+......... .+...+.. ++|.|.|. .++.
T Consensus 185 ~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~---~~~~~~~~-~~v~~~g~---~~~~ 257 (359)
T cd03808 185 PEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAIL---EIEKLGLE-GRVEFLGF---RDDV 257 (359)
T ss_pred CCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHH---HHHhcCCc-ceEEEeec---cccH
Confidence 4456778888865 89999999999999888899999999876432222111 35566666 79999998 3567
Q ss_pred HHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc--CCHHHHHHHHHHHhcCHH
Q 003891 601 MQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVT 677 (788)
Q Consensus 601 ~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~ 677 (788)
...|+.+|+++-|+.+ +.+++++|||++|+|||+-....... ++.. |-.+++. .|.+++++....+..|++
T Consensus 258 ~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~~~~-----~i~~-~~~g~~~~~~~~~~~~~~i~~l~~~~~ 331 (359)
T cd03808 258 PELLAAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPGCRE-----AVID-GVNGFLVPPGDAEALADAIERLIEDPE 331 (359)
T ss_pred HHHHHhccEEEecCcccCcchHHHHHHHcCCCEEEecCCCchh-----hhhc-CcceEEECCCCHHHHHHHHHHHHhCHH
Confidence 7888999999999876 66899999999999999854332221 2221 3334443 478999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 003891 678 ALANLRMSLRDLMSKSPVCDGQNFALGLE 706 (788)
Q Consensus 678 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~e 706 (788)
.+..++++.++...+. |+.+.+++.++
T Consensus 332 ~~~~~~~~~~~~~~~~--~s~~~~~~~~~ 358 (359)
T cd03808 332 LRARMGQAARKRAEEE--FDEEIVVKKLL 358 (359)
T ss_pred HHHHHHHHHHHHHHHh--cCHHHHHHHhh
Confidence 9999999988875543 88888888775
|
cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides. |
| >cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.36 E-value=8e-12 Score=138.69 Aligned_cols=166 Identities=14% Similarity=0.182 Sum_probs=129.2
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcE--EEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 003891 524 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSR--LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 599 (788)
Q Consensus 524 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~--l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~ 599 (788)
++.++|++++++ .|..+.+++++.++.+..|+.. +.++|+| +....+++.++..+.. ++|.|+|.++ .++
T Consensus 228 ~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g----~~~~~l~~~~~~~~~~-~~V~f~G~v~-~~e 301 (407)
T cd04946 228 DDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGG----PLEDTLKELAESKPEN-ISVNFTGELS-NSE 301 (407)
T ss_pred CCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCc----hHHHHHHHHHHhcCCC-ceEEEecCCC-hHH
Confidence 456778888866 8999999999999999888654 4567766 5667788888777876 8999999998 578
Q ss_pred HHHhccc--ccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchh--HHHhhhCCccc-cc--CCHHHHHHHHHH
Q 003891 600 HMQAYSL--MDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHL-IA--KNEDEYVQLALQ 671 (788)
Q Consensus 600 ~~~~~~~--~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~--~~l~~~gl~~~-ia--~~~~~y~~~a~~ 671 (788)
....|.. +|+++-|+.+ +.+.+++|||++|+|||+ +++|+ .++. -|-.++ +. .|.+++++...+
T Consensus 302 ~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIa-------s~vgg~~e~i~-~~~~G~l~~~~~~~~~la~~I~~ 373 (407)
T cd04946 302 VYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIA-------TNVGGTPEIVD-NGGNGLLLSKDPTPNELVSSLSK 373 (407)
T ss_pred HHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEe-------CCCCCcHHHhc-CCCcEEEeCCCCCHHHHHHHHHH
Confidence 8888754 7899988877 668899999999999998 44542 1111 132233 32 378999999999
Q ss_pred HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 003891 672 LASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 705 (788)
Q Consensus 672 l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 705 (788)
+.+|++.+..|+++.|+.+.+. |+.+...+.+
T Consensus 374 ll~~~~~~~~m~~~ar~~~~~~--f~~~~~~~~~ 405 (407)
T cd04946 374 FIDNEEEYQTMREKAREKWEEN--FNASKNYREF 405 (407)
T ss_pred HHhCHHHHHHHHHHHHHHHHHH--cCHHHhHHHh
Confidence 9999999999999999988654 8887766654
|
AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea. |
| >TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-11 Score=136.06 Aligned_cols=165 Identities=12% Similarity=0.092 Sum_probs=123.9
Q ss_pred CCCeEEEecCCC--CcCCHHHH----HHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCc
Q 003891 524 NGFITFGSFNNL--AKITPKVL----QVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 597 (788)
Q Consensus 524 ~~~~~f~~~~~~--~K~~~~~~----~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~ 597 (788)
.+..+++.++++ .|..+.++ ++|..+.+..|+.+|+++|.+. .. . +++++.. ++|.|+|.++
T Consensus 222 ~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~----~~-~----~~~l~~~-~~V~~~G~v~-- 289 (397)
T TIGR03087 222 PGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKP----SP-A----VRALAAL-PGVTVTGSVA-- 289 (397)
T ss_pred CCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCC----hH-H----HHHhccC-CCeEEeeecC--
Confidence 344556666765 67777665 6788888889999999999762 11 1 3344544 6899999976
Q ss_pred HHHHHhcccccEeecCCCC--CCchhHHHHhhhCCceeecCCCccCccchhH-HHhhhCCcccccCCHHHHHHHHHHHhc
Q 003891 598 HDHMQAYSLMDISLDTFPY--AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS-LLTKVGLKHLIAKNEDEYVQLALQLAS 674 (788)
Q Consensus 598 ~~~~~~~~~~Dv~Ld~~~~--~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~-~l~~~gl~~~ia~~~~~y~~~a~~l~~ 674 (788)
+....|+.+|+++-|+.+ +.+++++|||+||+|||+.. ++.. +...-|..-+++.|.+++++...+|.+
T Consensus 290 -~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~-------~~~~~i~~~~~~g~lv~~~~~~la~ai~~ll~ 361 (397)
T TIGR03087 290 -DVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASP-------EAAEGIDALPGAELLVAADPADFAAAILALLA 361 (397)
T ss_pred -CHHHHHHhCCEEEecccccCCcccHHHHHHHcCCCEEecC-------cccccccccCCcceEeCCCHHHHHHHHHHHHc
Confidence 456778889999998854 34668999999999999854 2211 111113333567899999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 675 DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 675 d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
|++.+++|+++.|+.+.+. |+++..++.+++.|.
T Consensus 362 ~~~~~~~~~~~ar~~v~~~--fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 362 NPAEREELGQAARRRVLQH--YHWPRNLARLDALLE 395 (397)
T ss_pred CHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHhc
Confidence 9999999999999887544 899999999999875
|
Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.6e-11 Score=130.90 Aligned_cols=224 Identities=19% Similarity=0.151 Sum_probs=190.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 003891 57 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 136 (788)
Q Consensus 57 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l 136 (788)
.......++..+...|-..+|+..|++. ..|.....||...|+..+|.....+-++.+| ++ ..|
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek~~-d~-------~ly 460 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEKDP-DP-------RLY 460 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcCCC-cc-------hhH
Confidence 3455678899999999999999999984 5677889999999999999999999998444 43 344
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 003891 137 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 216 (788)
Q Consensus 137 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 216 (788)
..+|++.....-|++|.++.+.. +..+...+|......++|+++.++++..++++|-....|+.+|.+..+.++
T Consensus 461 c~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred HHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhh
Confidence 44554433333455555544432 345667777778889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 217 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 296 (788)
Q Consensus 217 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 296 (788)
++.|.++|..++...|++.++|++++..|...++-.+|...++++++.+-++..+|.|...+..+.|.+++|++.|.+.+
T Consensus 535 ~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhCCCC
Q 003891 297 KIDPDS 302 (788)
Q Consensus 297 ~l~p~~ 302 (788)
.+.-+.
T Consensus 615 ~~~~~~ 620 (777)
T KOG1128|consen 615 DLRKKY 620 (777)
T ss_pred Hhhhhc
Confidence 775443
|
|
| >cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.9e-12 Score=135.53 Aligned_cols=166 Identities=20% Similarity=0.187 Sum_probs=124.9
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 003891 522 LTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 599 (788)
Q Consensus 522 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~ 599 (788)
.+++.++|+.+++. .|..+.+++++.++.. |+.+|+++|.+. ......... +.. ++|.|.|.++ .++
T Consensus 187 ~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~--~~~~l~i~G~~~----~~~~~~~~~---~~~-~~v~~~g~~~-~~~ 255 (359)
T cd03823 187 PPGGRLRFGFIGQLTPHKGVDLLLEAFKRLPR--GDIELVIVGNGL----ELEEESYEL---EGD-PRVEFLGAYP-QEE 255 (359)
T ss_pred CCCCceEEEEEecCccccCHHHHHHHHHHHHh--cCcEEEEEcCch----hhhHHHHhh---cCC-CeEEEeCCCC-HHH
Confidence 45667788888866 7888899999988776 899999998762 222222211 554 7999999987 789
Q ss_pred HHHhcccccEeecCCC--CCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc--CCHHHHHHHHHHHhcC
Q 003891 600 HMQAYSLMDISLDTFP--YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASD 675 (788)
Q Consensus 600 ~~~~~~~~Dv~Ld~~~--~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~y~~~a~~l~~d 675 (788)
....|+.+|+++-|+. .+.+.+++|||++|+|||+....... .++.. |..+++. .|.+++++....+.+|
T Consensus 256 ~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~-----e~i~~-~~~g~~~~~~d~~~l~~~i~~l~~~ 329 (359)
T cd03823 256 IDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASDIGGMA-----ELVRD-GVNGLLFPPGDAEDLAAALERLIDD 329 (359)
T ss_pred HHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCCCHH-----HHhcC-CCcEEEECCCCHHHHHHHHHHHHhC
Confidence 9999999999999985 36788999999999999984433221 12222 3234433 4589999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 676 VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 676 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
++.++.++++.++... .+.+++++++.|+
T Consensus 330 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 358 (359)
T cd03823 330 PDLLERLRAGIEPPRS------IEDQAEEYLKLYR 358 (359)
T ss_pred hHHHHHHHHhHHHhhh------HHHHHHHHHHHhh
Confidence 9999999999887653 2788888888885
|
ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-10 Score=114.21 Aligned_cols=181 Identities=22% Similarity=0.240 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHH
Q 003891 74 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 153 (788)
Q Consensus 74 ~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~ 153 (788)
...+...+-+....+|++..+ .+++..+...|+-+.+..+..++...+|.+...... +|......|++.+|+
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~-------~gk~~~~~g~~~~A~ 120 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAA-------QGKNQIRNGNFGEAV 120 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHH-------HHHHHHHhcchHHHH
Confidence 344666677777788888888 889999999999999999998888888887654433 455555677999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 154 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 233 (788)
Q Consensus 154 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 233 (788)
..++++....|++.+++..+|.+|.+.|++++|...|.+++++.|.++.+..|+|..+.-.|+++.|..++.++....+.
T Consensus 121 ~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a 200 (257)
T COG5010 121 SVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA 200 (257)
T ss_pred HHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 234 FSQSLNNLGVVYTVQGKMDAAAEMIEKAI 262 (788)
Q Consensus 234 ~~~~~~~la~~~~~~g~~~eA~~~l~kal 262 (788)
+..+..+++.+...+|++++|.....+-+
T Consensus 201 d~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 201 DSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred chHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 89999999999999999999987766543
|
|
| >cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.1e-11 Score=131.82 Aligned_cols=170 Identities=18% Similarity=0.121 Sum_probs=128.6
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 003891 523 TNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 600 (788)
Q Consensus 523 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~ 600 (788)
..+.++++.+++. .|..+.+++++.++....|+.+|++.|.+... .......+++.+.. ++|.|.|.++ .++.
T Consensus 192 ~~~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~---~~~~~~~~~~~~~~-~~v~~~g~~~-~~~~ 266 (365)
T cd03809 192 LLPRPYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWL---NEELLARLRELGLG-DRVRFLGYVS-DEEL 266 (365)
T ss_pred CCCCCeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCccc---cHHHHHHHHHcCCC-CeEEECCCCC-hhHH
Confidence 3345566666765 79999999999999999889999999865322 22223333667876 8999999988 6888
Q ss_pred HHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHH
Q 003891 601 MQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTAL 679 (788)
Q Consensus 601 ~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~ 679 (788)
...|..+|++|-|+-+ +.+.+.+|||++|+|||+.....+...++ ..|. -+...|.+++++...++.+|++.+
T Consensus 267 ~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~-----~~~~-~~~~~~~~~~~~~i~~l~~~~~~~ 340 (365)
T cd03809 267 AALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISSLPEVAG-----DAAL-YFDPLDPEALAAAIERLLEDPALR 340 (365)
T ss_pred HHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCCccceec-----Ccee-eeCCCCHHHHHHHHHHHhcCHHHH
Confidence 9999999999999866 66889999999999999855443333221 1111 123568999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHH
Q 003891 680 ANLRMSLRDLMSKSPVCDGQNFALGLE 706 (788)
Q Consensus 680 ~~~r~~~~~~~~~~~~~~~~~~~~~~e 706 (788)
..+++..++... .|+++.+++.+.
T Consensus 341 ~~~~~~~~~~~~---~~sw~~~~~~~~ 364 (365)
T cd03809 341 EELRERGLARAK---RFSWEKTARRTL 364 (365)
T ss_pred HHHHHHHHHHHH---hCCHHHHHHHHh
Confidence 999998885432 388998887765
|
mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide. |
| >cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.4e-11 Score=130.89 Aligned_cols=166 Identities=19% Similarity=0.142 Sum_probs=127.0
Q ss_pred eEEEecCCC--CcCCHHHHHHHHHHHhH-cCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 003891 527 ITFGSFNNL--AKITPKVLQVWARILCA-VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 603 (788)
Q Consensus 527 ~~f~~~~~~--~K~~~~~~~~~~~il~~-~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 603 (788)
+.|++.... .|..+.++++|..+.+. .|+.+++++|.+.. ... .++. ++|.|+|.+++.++....
T Consensus 194 i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~----~~~-------~~~~-~~v~~~g~~~~~~~~~~~ 261 (365)
T cd03825 194 ILFGAVGGTDPRKGFDELIEALKRLAERWKDDIELVVFGASDP----EIP-------PDLP-FPVHYLGSLNDDESLALI 261 (365)
T ss_pred EEEEecCCCccccCHHHHHHHHHHhhhccCCCeEEEEeCCCch----hhh-------ccCC-CceEecCCcCCHHHHHHH
Confidence 445555544 89999999999877665 68899999887621 111 1555 789999998866677888
Q ss_pred cccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc--CCHHHHHHHHHHHhcCHHHHH
Q 003891 604 YSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALA 680 (788)
Q Consensus 604 ~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~ 680 (788)
|+.+|+++-|+-+ +.|.+++|||++|+|||+.....+..-+. -+..+++. .|.+++++...++.+|++.+.
T Consensus 262 ~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~~e~~~------~~~~g~~~~~~~~~~~~~~l~~l~~~~~~~~ 335 (365)
T cd03825 262 YSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGGIPDIVD------HGVTGYLAKPGDPEDLAEGIEWLLADPDERE 335 (365)
T ss_pred HHhCCEEEeccccccccHHHHHHHhcCCCEEEecCCCChhhee------CCCceEEeCCCCHHHHHHHHHHHHhCHHHHH
Confidence 9999999999866 77999999999999999855433332221 12234443 378999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 003891 681 NLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 712 (788)
Q Consensus 681 ~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 712 (788)
+++++.++.... .|+.+.+++.+++.|+++
T Consensus 336 ~~~~~~~~~~~~--~~s~~~~~~~~~~~y~~~ 365 (365)
T cd03825 336 ELGEAARELAEN--EFDSRVQAKRYLSLYEEL 365 (365)
T ss_pred HHHHHHHHHHHH--hcCHHHHHHHHHHHHhhC
Confidence 999999887643 389999999999999763
|
wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.1e-11 Score=130.56 Aligned_cols=217 Identities=18% Similarity=0.141 Sum_probs=190.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 106 (788)
-..++..+...|-..+|+.+|++. ..|-....||...|+..+|..+..+-++ .|.++..|..+|.+.....
T Consensus 401 q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChH
Confidence 345677888889999999999884 5677889999999999999999999988 6777888888888877765
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 003891 107 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 186 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 186 (788)
-|++|.++.+... +.+...+|......++|+++.++++..++++|-....|+.+|.+..+.++++.|
T Consensus 472 ~yEkawElsn~~s-------------arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 472 LYEKAWELSNYIS-------------ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred HHHHHHHHhhhhh-------------HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 5566555554432 234445556666688999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003891 187 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 265 (788)
Q Consensus 187 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~ 265 (788)
.+.|..++..+|++.++|+|++..|.+.++..+|...++++++-+-++..+|-|.-.+..+.|.+++|++.|.+.+.+.
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999998899999999999999999999999999998874
|
|
| >TIGR02470 sucr_synth sucrose synthase | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.4e-11 Score=140.05 Aligned_cols=180 Identities=13% Similarity=0.089 Sum_probs=133.9
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCC-----CH---HHHHHHHHHHHHcCCCCCcEEEcCC
Q 003891 524 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFC-----CD---SVRHRFLSTLEQLGLESLRVDLLPL 593 (788)
Q Consensus 524 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~-----~~---~~~~~l~~~~~~~gi~~~rv~~~~~ 593 (788)
.+..++++++|+ .|..+.+++++.++....++++|+|+|++.. +. ....++.+.+++.|+. ++|.|+|.
T Consensus 548 ~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~-g~V~flG~ 626 (784)
T TIGR02470 548 PNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLH-GQIRWIGA 626 (784)
T ss_pred CCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCC-CeEEEccC
Confidence 344567888877 8999999999988765567899999987632 11 2446788889999998 99999997
Q ss_pred cCCcHH---HHHhc-ccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHh--hhCCccccc--CCHHH
Q 003891 594 ILLNHD---HMQAY-SLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT--KVGLKHLIA--KNEDE 664 (788)
Q Consensus 594 ~~~~~~---~~~~~-~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~--~~gl~~~ia--~~~~~ 664 (788)
..+..+ ....+ ..+|||+-|+.| +.|.|.+|||+||+|||+ +++|+ +-. .-|..+++. .|+++
T Consensus 627 ~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVA-------T~~GG-~~EiV~dg~tGfLVdp~D~ea 698 (784)
T TIGR02470 627 QLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFA-------TRFGG-PLEIIQDGVSGFHIDPYHGEE 698 (784)
T ss_pred cCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEE-------cCCCC-HHHHhcCCCcEEEeCCCCHHH
Confidence 532333 33322 246899999977 779999999999999997 66662 111 113344443 47888
Q ss_pred HHHHHHHHh----cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH--HHHH
Q 003891 665 YVQLALQLA----SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR--NMWH 714 (788)
Q Consensus 665 y~~~a~~l~----~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~--~~~~ 714 (788)
+.+...++. +|++.+++++++.++++.+. |+++.+++++.+... ..|.
T Consensus 699 LA~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~--FSW~~~A~~ll~l~~~~~~~~ 752 (784)
T TIGR02470 699 AAEKIVDFFEKCDEDPSYWQKISQGGLQRIYEK--YTWKIYSERLLTLAGIYGFWK 752 (784)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHhhhhHhh
Confidence 888887764 79999999999998877544 899999999998874 4574
|
This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria. |
| >cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.33 E-value=2e-11 Score=133.19 Aligned_cols=165 Identities=18% Similarity=0.137 Sum_probs=128.6
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 003891 524 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 601 (788)
Q Consensus 524 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~ 601 (788)
.+.++|+.+++. .|..+.+++++.++... |+.+|++.|.+ +....++ +.. ++|.|.|.++ .++..
T Consensus 195 ~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~-~~~~l~i~G~~----~~~~~~~------~~~-~~v~~~g~~~-~~~~~ 261 (364)
T cd03814 195 PDRPVLLYVGRLAPEKNLEALLDADLPLRRR-PPVRLVIVGDG----PARARLE------ARY-PNVHFLGFLD-GEELA 261 (364)
T ss_pred CCCeEEEEEeccccccCHHHHHHHHHHhhhc-CCceEEEEeCC----chHHHHh------ccC-CcEEEEeccC-HHHHH
Confidence 445667777765 78999999999999888 99999999976 2333332 333 7899999876 68888
Q ss_pred HhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc--CCHHHHHHHHHHHhcCHHH
Q 003891 602 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTA 678 (788)
Q Consensus 602 ~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~~ 678 (788)
..|+.+|++|.|+.. +.|+|.+|||++|+|||+.....+...+ .. +-.+++. .+.+++++...++..|++.
T Consensus 262 ~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~~~~~i-----~~-~~~g~~~~~~~~~~l~~~i~~l~~~~~~ 335 (364)
T cd03814 262 AAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGGPADIV-----TD-GENGLLVEPGDAEAFAAALAALLADPEL 335 (364)
T ss_pred HHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCCCchhhh-----cC-CcceEEcCCCCHHHHHHHHHHHHcCHHH
Confidence 999999999999866 6699999999999999996655433322 11 2233443 5677799999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 679 LANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 679 ~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
+.++.++.++.. ..|+++.+++.+++.|+
T Consensus 336 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 364 (364)
T cd03814 336 RRRMAARARAEA---ERRSWEAFLDNLLEAYR 364 (364)
T ss_pred HHHHHHHHHHHH---hhcCHHHHHHHHHHhhC
Confidence 999999988775 33899999999998873
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.4e-11 Score=142.76 Aligned_cols=181 Identities=14% Similarity=0.060 Sum_probs=139.3
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHHHhH--cCCcEEEEecCCCC-------CHHHHHHHHHHHHHcCCCCCcEEEc
Q 003891 523 TNGFITFGSFNNL--AKITPKVLQVWARILCA--VPNSRLVVKCKPFC-------CDSVRHRFLSTLEQLGLESLRVDLL 591 (788)
Q Consensus 523 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~--~p~~~l~l~~~~~~-------~~~~~~~l~~~~~~~gi~~~rv~~~ 591 (788)
..+.+++.+++|+ .|....+++++.++... .|+.++ ++|.+-. ..+....+.+.+.+.|+. ++|.|.
T Consensus 476 ~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~L-IiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~-g~V~Fl 553 (1050)
T TIGR02468 476 NPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLTL-IMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLY-GQVAYP 553 (1050)
T ss_pred cCCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEEE-EEecCchhhhhhccchHHHHHHHHHHHHhCCC-CeEEec
Confidence 3445567888877 89999999999988653 345553 4454311 113456788889999998 999999
Q ss_pred CCcCCcHHHHHhcccc----cEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhH-HHhhhCCccccc--CCHH
Q 003891 592 PLILLNHDHMQAYSLM----DISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS-LLTKVGLKHLIA--KNED 663 (788)
Q Consensus 592 ~~~~~~~~~~~~~~~~----Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~-~l~~~gl~~~ia--~~~~ 663 (788)
|.++ ..+...+|+.| |||+-|+-+ +.|.|.+|||+||+|||+ +++|+. =+..-|..++++ .|.+
T Consensus 554 G~v~-~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVA-------SdvGG~~EII~~g~nGlLVdP~D~e 625 (1050)
T TIGR02468 554 KHHK-QSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVA-------TKNGGPVDIHRVLDNGLLVDPHDQQ 625 (1050)
T ss_pred CCCC-HHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEE-------eCCCCcHHHhccCCcEEEECCCCHH
Confidence 9987 67888888877 699999977 779999999999999998 555520 011124444443 4899
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 003891 664 EYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRY 716 (788)
Q Consensus 664 ~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 716 (788)
++.+...++.+|++.+++|+++.++++. .|+++..++.+.+.|..+-.|+
T Consensus 626 aLA~AL~~LL~Dpelr~~m~~~gr~~v~---~FSWe~ia~~yl~~i~~~~~~~ 675 (1050)
T TIGR02468 626 AIADALLKLVADKQLWAECRQNGLKNIH---LFSWPEHCKTYLSRIASCRPRH 675 (1050)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999988864 3999999999999998876544
|
Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein. |
| >PLN00142 sucrose synthase | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.8e-11 Score=139.50 Aligned_cols=179 Identities=13% Similarity=0.041 Sum_probs=133.8
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC-----HH---HHHHHHHHHHHcCCCCCcEEEcCCc
Q 003891 525 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DS---VRHRFLSTLEQLGLESLRVDLLPLI 594 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~-----~~---~~~~l~~~~~~~gi~~~rv~~~~~~ 594 (788)
+..++++++|+ .|..+.++++++++.+..|+++|+|+|++... .+ ...++.+.+++.|+. ++|.|+|..
T Consensus 572 ~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~-~~V~flG~~ 650 (815)
T PLN00142 572 KKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLK-GQFRWIAAQ 650 (815)
T ss_pred CCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCC-CcEEEcCCc
Confidence 34467888877 89999999999998777789999999876211 11 235678888999998 999999864
Q ss_pred CC---cHHHHHhcc-cccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhH-HHhhhCCccccc--CCHHHHH
Q 003891 595 LL---NHDHMQAYS-LMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS-LLTKVGLKHLIA--KNEDEYV 666 (788)
Q Consensus 595 ~~---~~~~~~~~~-~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~-~l~~~gl~~~ia--~~~~~y~ 666 (788)
.+ ..+...++. .+|||+-|+.| +.|.|.+|||+||+|||+ +++|+- -+..-|..+++. .|.+++.
T Consensus 651 ~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVA-------TdvGG~~EIV~dG~tG~LV~P~D~eaLA 723 (815)
T PLN00142 651 TNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFA-------TCQGGPAEIIVDGVSGFHIDPYHGDEAA 723 (815)
T ss_pred CCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEE-------cCCCCHHHHhcCCCcEEEeCCCCHHHHH
Confidence 32 245555554 57999999887 679999999999999997 556521 011124455543 4788888
Q ss_pred HHHHH----HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH--HHH
Q 003891 667 QLALQ----LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR--NMW 713 (788)
Q Consensus 667 ~~a~~----l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~--~~~ 713 (788)
+...+ +.+|++.+.+|+++.++++.+. |+++.+++++++.-. ..|
T Consensus 724 ~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e~--FSWe~~A~rll~L~~~~~~~ 774 (815)
T PLN00142 724 NKIADFFEKCKEDPSYWNKISDAGLQRIYEC--YTWKIYAERLLTLGGVYGFW 774 (815)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHhhcchh
Confidence 77665 4589999999999998887544 899999999998764 356
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.4e-10 Score=130.85 Aligned_cols=148 Identities=13% Similarity=0.015 Sum_probs=113.2
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhC
Q 003891 84 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 163 (788)
Q Consensus 84 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~ 163 (788)
.....|.+.+++.+||.+....|.+++|...++.++++.|++..+..+++.++..+ +++++|+..+++++..+
T Consensus 78 ~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~-------~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 78 YVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQ-------QGIEAGRAEIELYFSGG 150 (694)
T ss_pred HHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-------ccHHHHHHHHHHHhhcC
Confidence 34456677777777777777777777777777777777777777777777777664 47777777777777778
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 003891 164 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 238 (788)
Q Consensus 164 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 238 (788)
|++..+++.+|.++...|++++|+.+|++++..+|++..++..+|.++...|+.++|...|+++++...+-...+
T Consensus 151 p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 151 SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 888888888888888888888888888888887777788888888888888888888888888887765544443
|
|
| >KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.3e-11 Score=121.88 Aligned_cols=211 Identities=20% Similarity=0.233 Sum_probs=152.6
Q ss_pred CCCccEEEecCCCCCcCc---cCCCccceEEcCCCcc--ccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHH
Q 003891 472 LPTIDYRITDSLADPPET---KQKHVEELIRLPECFL--CYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQ 544 (788)
Q Consensus 472 ~~~~Dy~i~d~~~~p~~~---~~~~~e~l~~lp~~~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~ 544 (788)
|..+|-.|.=....-++. ...-.+++..+|+.-. .|.|.+.. ...++.++....+|+ .|..+-.++
T Consensus 143 L~~id~~IcVshtskentvlr~~L~p~kvsvIPnAv~~~~f~P~~~~-------~~S~~i~~ivv~sRLvyrKGiDll~~ 215 (426)
T KOG1111|consen 143 LANIDRIICVSHTSKENTVLRGALAPAKVSVIPNAVVTHTFTPDAAD-------KPSADIITIVVASRLVYRKGIDLLLE 215 (426)
T ss_pred ecCCCcEEEEeecCCCceEEEeccCHhHeeeccceeeccccccCccc-------cCCCCeeEEEEEeeeeeccchHHHHH
Confidence 345666654444444443 2334577888887422 24452221 112333666666777 899999999
Q ss_pred HHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHH
Q 003891 545 VWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTC 623 (788)
Q Consensus 545 ~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~ 623 (788)
+-.++.+..|+.++++.|+| |-+..+++.++++-+. +||.++|.++ .++....|..-||||.|+-. ..|++.+
T Consensus 216 iIp~vc~~~p~vrfii~GDG----Pk~i~lee~lEk~~l~-~rV~~lG~v~-h~~Vr~vl~~G~IFlntSlTEafc~~iv 289 (426)
T KOG1111|consen 216 IIPSVCDKHPEVRFIIIGDG----PKRIDLEEMLEKLFLQ-DRVVMLGTVP-HDRVRDVLVRGDIFLNTSLTEAFCMVIV 289 (426)
T ss_pred HHHHHHhcCCCeeEEEecCC----cccchHHHHHHHhhcc-CceEEecccc-hHHHHHHHhcCcEEeccHHHHHHHHHHH
Confidence 99999999999999999998 7888888999999998 9999999998 78999999999999999966 8899999
Q ss_pred HHhhhCCceeecCCCccCccchhHHHhhhCCcccccCC--------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCC
Q 003891 624 ESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKN--------EDEYVQLALQLASDVTALANLRMSLRDLMSKSPV 695 (788)
Q Consensus 624 eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~--------~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~ 695 (788)
||+.||+|||+ .|+| |+||.+..| +++.++....-.+..... -....+++ +..
T Consensus 290 EAaScGL~VVs-------TrVG-------GIpeVLP~d~i~~~~~~~~dl~~~v~~ai~~~~~~---p~~~h~~v--~~~ 350 (426)
T KOG1111|consen 290 EAASCGLPVVS-------TRVG-------GIPEVLPEDMITLGEPGPDDLVGAVEKAITKLRTL---PLEFHDRV--KKM 350 (426)
T ss_pred HHHhCCCEEEE-------eecC-------CccccCCccceeccCCChHHHHHHHHHHHHHhccC---chhHHHHH--HHh
Confidence 99999999997 9999 999877554 455544433332222111 11122333 356
Q ss_pred CChHHHHHHHHHHHHHHHH
Q 003891 696 CDGQNFALGLESTYRNMWH 714 (788)
Q Consensus 696 ~~~~~~~~~~e~~~~~~~~ 714 (788)
++++..++.-|..|.++-.
T Consensus 351 y~w~dVa~rTekvy~r~~~ 369 (426)
T KOG1111|consen 351 YSWKDVAERTEKVYDRAAT 369 (426)
T ss_pred ccHHHHHHHHHHHHHHHhh
Confidence 8999999999999987644
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.4e-11 Score=120.95 Aligned_cols=119 Identities=34% Similarity=0.514 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003891 20 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 99 (788)
Q Consensus 20 ~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la 99 (788)
...+|+-+...|.-+.+.++|.+|+..|.+||+++|+++..|.+.+.+|.++|.|+.|++.++.++.++|.+..+|..||
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG 156 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG 156 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 45678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 003891 100 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 138 (788)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~ 138 (788)
.+|..+|++++|++.|+++++++|++...+.++..+-..
T Consensus 157 ~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 157 LAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred HHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999998666555444333
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.1e-09 Score=107.43 Aligned_cols=257 Identities=13% Similarity=-0.006 Sum_probs=189.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 003891 60 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 139 (788)
Q Consensus 60 ~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l 139 (788)
...+-|..-+..|+|.+|++...+.-+..+.-..++..-+....++|+++.|-.++.++-+..++... ..+...
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l------~v~ltr 159 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTL------AVELTR 159 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchH------HHHHHH
Confidence 34455667778899999999999988888887788888899999999999999999999998665442 233445
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---CHHHHHHHHHH--HHHc
Q 003891 140 GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH---CAEACNNLGVI--YKDR 214 (788)
Q Consensus 140 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~--~~~~ 214 (788)
+.+...++++..|..-..++++..|.++.+......+|...|++.+...++.+.-+..-- ...-+-+.+.. +.+.
T Consensus 160 arlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~ 239 (400)
T COG3071 160 ARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQA 239 (400)
T ss_pred HHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHH
Confidence 556666899999999999999999999999999999999999999999999887765322 22222222211 1222
Q ss_pred CCHHHHH---HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003891 215 DNLDKAV---ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 291 (788)
Q Consensus 215 g~~~eA~---~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 291 (788)
.+-+.+. .+++..-..-.+++.....++.-+...|+.++|.++.+.+++..-+.. ....++ ...-++.+.=++.
T Consensus 240 ~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~ 316 (400)
T COG3071 240 RDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKA 316 (400)
T ss_pred hccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHH
Confidence 2222222 244433333446688888999999999999999999999998865432 222222 2356788888999
Q ss_pred HHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHH
Q 003891 292 YEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 327 (788)
Q Consensus 292 ~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~ 327 (788)
.++.++..|+++.... .++..++..+...++-+.
T Consensus 317 ~e~~l~~h~~~p~L~~--tLG~L~~k~~~w~kA~~~ 350 (400)
T COG3071 317 AEKWLKQHPEDPLLLS--TLGRLALKNKLWGKASEA 350 (400)
T ss_pred HHHHHHhCCCChhHHH--HHHHHHHHhhHHHHHHHH
Confidence 9999999999996544 467777776665555443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-09 Score=121.76 Aligned_cols=263 Identities=17% Similarity=0.145 Sum_probs=190.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 003891 57 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 136 (788)
Q Consensus 57 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l 136 (788)
+.+.+.....++...|++++|++++++....-.+....+-..|.++.++|++++|...|...++.+|++...+..+..++
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 45677888899999999999999999988888888899999999999999999999999999999999987776666554
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 003891 137 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM-AIVFYELAFHFNPHCAEACNNLGVIYKDRD 215 (788)
Q Consensus 137 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~la~~~~~~g 215 (788)
.... -....+.+.-...|++.....|....... +...+..-.++.. +..++...+. ..-+....++-.+|....
T Consensus 83 g~~~--~~~~~~~~~~~~~y~~l~~~yp~s~~~~r-l~L~~~~g~~F~~~~~~yl~~~l~--KgvPslF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 83 GLQL--QLSDEDVEKLLELYDELAEKYPRSDAPRR-LPLDFLEGDEFKERLDEYLRPQLR--KGVPSLFSNLKPLYKDPE 157 (517)
T ss_pred hhhc--ccccccHHHHHHHHHHHHHhCccccchhH-hhcccCCHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHcChh
Confidence 2221 11223567788888888888876433221 1111222223333 3333444443 344566666666666444
Q ss_pred CHHHHHHHHHHHHhh---------------CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003891 216 NLDKAVECYQMALSI---------------KPNF--SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 278 (788)
Q Consensus 216 ~~~eA~~~~~~al~~---------------~p~~--~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~ 278 (788)
+..-...++...... .|.. ..+++.++..|...|++++|+++++++++..|..++.+...|.+
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Kari 237 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 433333333332211 1111 23668889999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHH
Q 003891 279 YRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE 326 (788)
Q Consensus 279 ~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~ 326 (788)
+...|++.+|.++++.+.++|+.+...... .+..++..|..+++.+
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK--~aKy~LRa~~~e~A~~ 283 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELDLADRYINSK--CAKYLLRAGRIEEAEK 283 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCChhhHHHHHH--HHHHHHHCCCHHHHHH
Confidence 999999999999999999999988765443 4455566666555443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PLN02501 digalactosyldiacylglycerol synthase | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.6e-11 Score=134.93 Aligned_cols=259 Identities=11% Similarity=0.001 Sum_probs=159.9
Q ss_pred CHHHHHHHHHhCCCcEEEe-CCCCCCCCccc-ccccCCCCeEEec----ccCCCCCCCCCccE--------E----EecC
Q 003891 421 DEKKVAAMVREDKIDILVE-LTGHTANNKLG-MMACQPAPVQVTW----IGYPNTTGLPTIDY--------R----ITDS 482 (788)
Q Consensus 421 ~~~~~a~~i~~d~idilvd-l~g~t~~~~~~-~~a~r~Apvq~~~----~g~~~ttg~~~~Dy--------~----i~d~ 482 (788)
+...+.+.|.+.++||++= .-+|-.....+ ..|.|.-||-.++ ..|....|++.+-. + -+|.
T Consensus 422 p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl~PVVasyHTny~eYl~~y~~g~L~~~llk~l~~~v~r~hcD~ 501 (794)
T PLN02501 422 PAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCHK 501 (794)
T ss_pred chHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHcCCeEEEEeCCcHHHHhHhcchhHHHHHHHHHHHHHHHhhCCE
Confidence 4578999999999999962 11222211111 1244444654333 22222223222111 1 1455
Q ss_pred CCCCcCccCCCccceEEcCCCccc---cCCCCCCCCCCCCCCCCC--CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC
Q 003891 483 LADPPETKQKHVEELIRLPECFLC---YTPSPEAGPVCPTPALTN--GFITFGSFNNL--AKITPKVLQVWARILCAVPN 555 (788)
Q Consensus 483 ~~~p~~~~~~~~e~l~~lp~~~~~---~~~~~~~~~~~~~~~~~~--~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~ 555 (788)
++.|.+....+....+.-.+ ++. |.|....... ...+++. ..+.| ++|+ .|....++++|..+....|+
T Consensus 502 VIaPS~atq~L~~~vI~nVn-GVDte~F~P~~r~~~~-r~lgi~~~~kgiLf--VGRLa~EKGld~LLeAla~L~~~~pn 577 (794)
T PLN02501 502 VLRLSAATQDLPKSVICNVH-GVNPKFLKIGEKVAEE-RELGQQAFSKGAYF--LGKMVWAKGYRELIDLLAKHKNELDG 577 (794)
T ss_pred EEcCCHHHHHhcccceeecc-cccccccCCcchhHHH-HhcCCccccCceEE--EEcccccCCHHHHHHHHHHHHhhCCC
Confidence 66665554433333333222 221 3332211100 1122221 11333 4455 99999999999999998999
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceee
Q 003891 556 SRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVT 634 (788)
Q Consensus 556 ~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt 634 (788)
.+|+|+|.| +.++.+++.+.++|+. |.|+|.... ....|+.+|||+-|+.+ +.|++++|||+||+|||+
T Consensus 578 vrLvIVGDG----P~reeLe~la~eLgL~---V~FLG~~dd---~~~lyasaDVFVlPS~sEgFGlVlLEAMA~GlPVVA 647 (794)
T PLN02501 578 FNLDVFGNG----EDAHEVQRAAKRLDLN---LNFLKGRDH---ADDSLHGYKVFINPSISDVLCTATAEALAMGKFVVC 647 (794)
T ss_pred eEEEEEcCC----ccHHHHHHHHHHcCCE---EEecCCCCC---HHHHHHhCCEEEECCCcccchHHHHHHHHcCCCEEE
Confidence 999999988 7788899888888883 889988542 23567789999999988 679999999999999998
Q ss_pred cCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 003891 635 MAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLEST 708 (788)
Q Consensus 635 ~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~ 708 (788)
....... ++. -|-..++..|.+++++.+.++..|+..+..+++ ..-++++.++++|++.
T Consensus 648 Td~pG~e------~V~-~g~nGll~~D~EafAeAI~~LLsd~~~rl~~~a--------~~~~SWeAaadrLle~ 706 (794)
T PLN02501 648 ADHPSNE------FFR-SFPNCLTYKTSEDFVAKVKEALANEPQPLTPEQ--------RYNLSWEAATQRFMEY 706 (794)
T ss_pred ecCCCCc------eEe-ecCCeEecCCHHHHHHHHHHHHhCchhhhHHHH--------HhhCCHHHHHHHHHHh
Confidence 5432110 111 134445668999999999999998875433322 1147888888888764
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-09 Score=133.10 Aligned_cols=280 Identities=13% Similarity=0.008 Sum_probs=210.7
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------C
Q 003891 23 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNLGVVYSELMQYDTALGCYEKAALERPM------Y 91 (788)
Q Consensus 23 la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~------~ 91 (788)
.+.+...+|..+...|++++|...++++++..+.. ..+...+|.++...|++++|...+++++..... .
T Consensus 451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~ 530 (903)
T PRK04841 451 QAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYA 530 (903)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHH
Confidence 34455567888999999999999999999864442 235678899999999999999999999875332 1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCC-----
Q 003891 92 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI-AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH----- 165 (788)
Q Consensus 92 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~----- 165 (788)
..++..+|.++...|++++|...++++++....... .......++..++.++...|++++|...+++++.....
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 610 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ 610 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH
Confidence 346778899999999999999999999987433210 00111233455677888889999999999999876332
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---
Q 003891 166 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEAC----NNLGVIYKDRDNLDKAVECYQMALSIKPNFS--- 235 (788)
Q Consensus 166 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~----~~la~~~~~~g~~~eA~~~~~~al~~~p~~~--- 235 (788)
....+..++.++...|++++|...+.++....... .... ......+...|+.++|..++.......+...
T Consensus 611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 690 (903)
T PRK04841 611 QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFL 690 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhH
Confidence 23456678999999999999999999997753321 1111 1122445568999999999877665332222
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003891 236 -QSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302 (788)
Q Consensus 236 -~~~~~la~~~~~~g~~~eA~~~l~kal~~~p------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 302 (788)
..+..++.++...|++++|...+++++.... ....++..+|.++...|+.++|...+.+++++....
T Consensus 691 ~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 691 QGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 1256789999999999999999999988632 224578889999999999999999999999987553
|
|
| >cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.2e-10 Score=123.78 Aligned_cols=311 Identities=12% Similarity=-0.020 Sum_probs=173.5
Q ss_pred eEeeccCCc------ccChhHHhhhhhhcccCCCceEEEEEeccccCChhhHHHHHHHhhhCCeEEEccC------CCHH
Q 003891 356 VIGYVSPDY------FTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG------IDEK 423 (788)
Q Consensus 356 riGyvS~df------~~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~~~~~~~~~~~~~~~------~~~~ 423 (788)
+|.+++..+ ....+..++..+...+.+.+.+|++++........ ....... ...+..... ....
T Consensus 2 kI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~ 77 (335)
T cd03802 2 RIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAA--PLVPVVP--EPLRLDAPGRDRAEAEALA 77 (335)
T ss_pred eEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCccc--ceeeccC--CCcccccchhhHhhHHHHH
Confidence 566666555 22334455666777777778999998765432111 1111100 011111000 0124
Q ss_pred HHHHHHHhCCCcEEEeCCCCCCCCcccccccCCCCeEEecccCCCCCCC------CCccEEEecCCCCCcCccCCCccce
Q 003891 424 KVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGL------PTIDYRITDSLADPPETKQKHVEEL 497 (788)
Q Consensus 424 ~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~Apvq~~~~g~~~ttg~------~~~Dy~i~d~~~~p~~~~~~~~e~l 497 (788)
.+.+.|...++||+.--+.... ......+-.|+-.+..+.+..... ...|.+++-.-......... .++
T Consensus 78 ~~~~~~~~~~~Divh~~~~~~~---~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~--~~~ 152 (335)
T cd03802 78 LAERALAAGDFDIVHNHSLHLP---LPFARPLPVPVVTTLHGPPDPELLKLYYAARPDVPFVSISDAQRRPWPPL--PWV 152 (335)
T ss_pred HHHHHHhcCCCCEEEecCcccc---hhhhcccCCCEEEEecCCCCcccchHHHhhCcCCeEEEecHHHHhhcccc--ccc
Confidence 5677888899999963222221 112223445666666555432211 12233332211111001111 455
Q ss_pred EEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHH
Q 003891 498 IRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFL 575 (788)
Q Consensus 498 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~ 575 (788)
..+|+.. . +..-. + .+.+..+++.+++ ..|..+.++++.. .++.+|+++|.+. ....+.
T Consensus 153 ~vi~ngv-d--~~~~~-~------~~~~~~~i~~~Gr~~~~Kg~~~li~~~~-----~~~~~l~i~G~~~----~~~~~~ 213 (335)
T cd03802 153 ATVHNGI-D--LDDYP-F------RGPKGDYLLFLGRISPEKGPHLAIRAAR-----RAGIPLKLAGPVS----DPDYFY 213 (335)
T ss_pred EEecCCc-C--hhhCC-C------CCCCCCEEEEEEeeccccCHHHHHHHHH-----hcCCeEEEEeCCC----CHHHHH
Confidence 5566432 1 11000 0 1112223444454 5888888777643 2578999998773 223333
Q ss_pred HHHHHcC-CCCCcEEEcCCcCCcHHHHHhcccccEeecCCC--CCCchhHHHHhhhCCceeecCCCccCccchhHHHhhh
Q 003891 576 STLEQLG-LESLRVDLLPLILLNHDHMQAYSLMDISLDTFP--YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV 652 (788)
Q Consensus 576 ~~~~~~g-i~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~--~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~ 652 (788)
....+.. +. ++|.|.|.++ ..+....|+.+|+++-|+. .+.|.+++|||++|+|||+-.......-+ .-
T Consensus 214 ~~~~~~~~~~-~~v~~~G~~~-~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~~~e~i------~~ 285 (335)
T cd03802 214 REIAPELLDG-PDIEYLGEVG-GAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGAVPEVV------ED 285 (335)
T ss_pred HHHHHhcccC-CcEEEeCCCC-HHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCCchhhe------eC
Confidence 3334333 44 8999999988 5778889999999999885 46799999999999999985433332222 12
Q ss_pred CCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 653 GLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 653 gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
|..+++..+.+++++....+..+.. +..++... ..|+.+.+++++++.|+
T Consensus 286 ~~~g~l~~~~~~l~~~l~~l~~~~~------~~~~~~~~--~~~s~~~~~~~~~~~y~ 335 (335)
T cd03802 286 GVTGFLVDSVEELAAAVARADRLDR------AACRRRAE--RRFSAARMVDDYLALYR 335 (335)
T ss_pred CCcEEEeCCHHHHHHHHHHHhccHH------HHHHHHHH--HhCCHHHHHHHHHHHhC
Confidence 4456677778999888888765542 22333332 34899999999999884
|
aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue. |
| >cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-11 Score=134.25 Aligned_cols=258 Identities=18% Similarity=0.154 Sum_probs=164.2
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCCCCcccccccCC--CCeEEecccCCCCC-----CCCCccEEEecCCCCCcCcc---CC
Q 003891 423 KKVAAMVREDKIDILVELTGHTANNKLGMMACQP--APVQVTWIGYPNTT-----GLPTIDYRITDSLADPPETK---QK 492 (788)
Q Consensus 423 ~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~--Apvq~~~~g~~~tt-----g~~~~Dy~i~d~~~~p~~~~---~~ 492 (788)
..+...++..++||++--+.+.. -...++.+. .|+-..+.|+.... .+...|.+++-.-....... ..
T Consensus 68 ~~l~~~~~~~~~dii~~~~~~~~--~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~vi~~s~~~~~~~~~~~~~ 145 (355)
T cd03819 68 ARLRRLIREEKVDIVHARSRAPA--WSAYLAARRTRPPFVTTVHGFYSVNFRYNAIMARGDRVIAVSNFIADHIRENYGV 145 (355)
T ss_pred HHHHHHHHHcCCCEEEECCCchh--HHHHHHHHhcCCCEEEEeCCchhhHHHHHHHHHhcCEEEEeCHHHHHHHHHhcCC
Confidence 45677889999999975433222 122222222 45555555543222 12345666543211111111 12
Q ss_pred CccceEEcCCCcc--ccCCCCCCCC----CCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCC
Q 003891 493 HVEELIRLPECFL--CYTPSPEAGP----VCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKP 564 (788)
Q Consensus 493 ~~e~l~~lp~~~~--~~~~~~~~~~----~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~ 564 (788)
..+++..+|++.- .|.+...... .+...+++++.++++.++++ .|..+.+++++.++....|+.+|+++|.+
T Consensus 146 ~~~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~ 225 (355)
T cd03819 146 DPDRIRVIPRGVDLDRFDPGAVPPERILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDA 225 (355)
T ss_pred ChhhEEEecCCccccccCccccchHHHHHHHHHcCCCCCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 2467777876421 0111110000 00111345667778888875 89999999999999888889999999987
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCC-CC-CCchhHHHHhhhCCceeecCCCccCc
Q 003891 565 FCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF-PY-AGTTTTCESLYMGVPCVTMAGSVHAH 642 (788)
Q Consensus 565 ~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~-~~-~g~~t~~eal~~GvPvvt~~g~~~~~ 642 (788)
...+.....+.+.+.+.|+. ++|.|.|. .++....|..+|+++-|+ .+ +.|++.+|||++|+|||+........
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~-~~v~~~g~---~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~~~e 301 (355)
T cd03819 226 QGRRFYYAELLELIKRLGLQ-DRVTFVGH---CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGGARE 301 (355)
T ss_pred cccchHHHHHHHHHHHcCCc-ceEEEcCC---cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCCcHH
Confidence 55555667777788888997 89999998 357778888899999998 44 67899999999999999854322211
Q ss_pred cchhHHHhhhCCcccc--cCCHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhhc
Q 003891 643 NVGVSLLTKVGLKHLI--AKNEDEYVQLAL-QLASDVTALANLRMSLRDLMSK 692 (788)
Q Consensus 643 r~~~~~l~~~gl~~~i--a~~~~~y~~~a~-~l~~d~~~~~~~r~~~~~~~~~ 692 (788)
++.. |..+++ ..|++++++... .+..|++.+.+++++.++.+.+
T Consensus 302 -----~i~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~ 348 (355)
T cd03819 302 -----TVRP-GETGLLVPPGDAEALAQALDQILSLLPEGRAKMFAKARMCVET 348 (355)
T ss_pred -----HHhC-CCceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 1222 323333 358888888775 4446899999999999887654
|
WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.4e-11 Score=109.83 Aligned_cols=119 Identities=16% Similarity=0.228 Sum_probs=113.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 154 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 233 (788)
Q Consensus 154 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 233 (788)
+.+++++..+|++....+.+|..+...|++++|+..+++++..+|.+..++..+|.++...|++++|+.+++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003891 234 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 272 (788)
Q Consensus 234 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~ 272 (788)
++..++.+|.++...|++++|+..++++++.+|++....
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 999999999999999999999999999999999886643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PLN02316 synthase/transferase | Back alignment and domain information |
|---|
Probab=99.30 E-value=6e-11 Score=140.00 Aligned_cols=173 Identities=16% Similarity=0.062 Sum_probs=132.4
Q ss_pred CCCC-CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCC-CCcEEEcCCcC
Q 003891 520 PALT-NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLE-SLRVDLLPLIL 595 (788)
Q Consensus 520 ~~~~-~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~-~~rv~~~~~~~ 595 (788)
.+++ .+.+++|+++|+ .|..+.+++++.++++ ++.+|+|+|.|- .......|++..+++|+. ++||.|.+...
T Consensus 833 lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~--~~~qlVIvG~Gp-d~~~e~~l~~La~~Lg~~~~~rV~f~g~~d 909 (1036)
T PLN02316 833 LGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLE--RNGQVVLLGSAP-DPRIQNDFVNLANQLHSSHHDRARLCLTYD 909 (1036)
T ss_pred hCCCcccCeEEEEEeccccccCHHHHHHHHHHHhh--cCcEEEEEeCCC-CHHHHHHHHHHHHHhCccCCCeEEEEecCC
Confidence 4555 367889999988 8999999999999986 579999998762 234577888888999885 58999987643
Q ss_pred CcHHH-HHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc--------------
Q 003891 596 LNHDH-MQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA-------------- 659 (788)
Q Consensus 596 ~~~~~-~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia-------------- 659 (788)
+.. ..+|..+|+||-|+-| +.|.|.+|||++|+|+|+ +++| |++|.|.
T Consensus 910 --e~lah~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVv-------s~vG-------GL~DtV~d~d~~~~~~~~~g~ 973 (1036)
T PLN02316 910 --EPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVV-------RKTG-------GLFDTVFDVDHDKERAQAQGL 973 (1036)
T ss_pred --HHHHHHHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEE-------EcCC-------CcHhhcccccccccccccccc
Confidence 222 2589999999999988 779999999999987775 4555 5554442
Q ss_pred ---------CCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 003891 660 ---------KNEDEYVQLALQLASD-VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 713 (788)
Q Consensus 660 ---------~~~~~y~~~a~~l~~d-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 713 (788)
.|++++.....++..+ ++.+..+++..+..|.. -|++.+.+++++++|+++-
T Consensus 974 ~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~~~~r~~m~~--dFSW~~~A~~Y~~LY~~a~ 1035 (1036)
T PLN02316 974 EPNGFSFDGADAAGVDYALNRAISAWYDGRDWFNSLCKRVMEQ--DWSWNRPALDYMELYHSAR 1035 (1036)
T ss_pred CCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--hCCHHHHHHHHHHHHHHHh
Confidence 2677787777777766 34555667777766653 4999999999999998763
|
|
| >cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-10 Score=127.99 Aligned_cols=163 Identities=12% Similarity=0.168 Sum_probs=120.1
Q ss_pred EEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHH-HcCCCCCcEEEcCCcCCcHHHHHhcc
Q 003891 529 FGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLE-QLGLESLRVDLLPLILLNHDHMQAYS 605 (788)
Q Consensus 529 f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~-~~gi~~~rv~~~~~~~~~~~~~~~~~ 605 (788)
++.++++ .|....+++++.++.. +.+|+++|.+..... +.+.+. ..++. ++|.|.|.++ .++....|.
T Consensus 196 i~~~G~~~~~Kg~~~li~a~~~l~~---~~~l~ivG~~~~~~~----~~~~~~~~~~~~-~~V~~~g~~~-~~~~~~~~~ 266 (363)
T cd04955 196 YLLVGRIVPENNIDDLIEAFSKSNS---GKKLVIVGNADHNTP----YGKLLKEKAAAD-PRIIFVGPIY-DQELLELLR 266 (363)
T ss_pred EEEEecccccCCHHHHHHHHHhhcc---CceEEEEcCCCCcch----HHHHHHHHhCCC-CcEEEccccC-hHHHHHHHH
Confidence 4455654 8888999998887653 789999997633223 333333 56776 8999999988 578889999
Q ss_pred cccEeecCCCC--CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHHHHHH
Q 003891 606 LMDISLDTFPY--AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLR 683 (788)
Q Consensus 606 ~~Dv~Ld~~~~--~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r 683 (788)
.+|+++-|+.. +.+.+++|||++|+||||-.......-+ +-.+++....+.+.+...++.+|++.+..++
T Consensus 267 ~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~~e~~--------~~~g~~~~~~~~l~~~i~~l~~~~~~~~~~~ 338 (363)
T cd04955 267 YAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFNREVL--------GDKAIYFKVGDDLASLLEELEADPEEVSAMA 338 (363)
T ss_pred hCCEEEeCCccCCCCChHHHHHHHcCCCEEEecCCccceee--------cCCeeEecCchHHHHHHHHHHhCHHHHHHHH
Confidence 99999888854 5688999999999999984322111111 1123333444449999999999999999999
Q ss_pred HHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 684 MSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
++.++...+ .|+++.++.++++.|+
T Consensus 339 ~~~~~~~~~--~fs~~~~~~~~~~~y~ 363 (363)
T cd04955 339 KAARERIRE--KYTWEKIADQYEELYK 363 (363)
T ss_pred HHHHHHHHH--hCCHHHHHHHHHHHhC
Confidence 998887654 4899999999999884
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.1e-11 Score=120.24 Aligned_cols=118 Identities=30% Similarity=0.479 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 280 (788)
Q Consensus 201 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~ 280 (788)
++-+-.-|.-+.+.++|.+|+..|.+||+++|.++..|.+.+.+|.++|.++.|++-++.++.++|.+..+|..||.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 34555678888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccC
Q 003891 281 DAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINE 318 (788)
Q Consensus 281 ~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~ 318 (788)
.+|++++|++.|+++++++|++...+.++-.+..-+.+
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999888776665544443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.8e-09 Score=128.65 Aligned_cols=305 Identities=14% Similarity=-0.003 Sum_probs=223.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HH
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKIDPH---------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AE 93 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~-----~~ 93 (788)
...+..+...|++++|...+.++....+. .......++.++...|++++|...++++++..+.. ..
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 34566667889999999999988765321 23455667888899999999999999998854432 23
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCC--------
Q 003891 94 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH-------- 165 (788)
Q Consensus 94 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------- 165 (788)
+...+|.++...|++++|...+++++........ ......++..++.++...|++++|..++++++.....
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~-~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 571 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDV-YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM 571 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc-hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence 5678899999999999999999999987554322 2233456678888889999999999999999876321
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHH
Q 003891 166 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-----CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQS 237 (788)
Q Consensus 166 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~ 237 (788)
....+..+|.++...|++++|...+++++..... ....+..++.++...|++++|...+.++..+.... ...
T Consensus 572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~ 651 (903)
T PRK04841 572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDW 651 (903)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhH
Confidence 1234567888999999999999999998875321 24566778999999999999999999997763321 111
Q ss_pred HH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----hhh
Q 003891 238 LN----NLGVVYTVQGKMDAAAEMIEKAIAANPTYA----EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS----RNA 305 (788)
Q Consensus 238 ~~----~la~~~~~~g~~~eA~~~l~kal~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~----~~a 305 (788)
.. .....+...|+.++|..++.......+... ..+..++.++...|++++|...+++++...... ..+
T Consensus 652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a 731 (903)
T PRK04841 652 IANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN 731 (903)
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 11 122445568999999999877655332222 225678999999999999999999998863221 233
Q ss_pred HHhHHHHhhhccCCCchHHHHHHHHHHH
Q 003891 306 GQNRLLAMNYINEGHDDKLFEAHRDWGK 333 (788)
Q Consensus 306 ~~~~lla~~~l~~g~~~~~~~~~~~~~~ 333 (788)
.....++..+...|+.+++.+..++...
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455677888888988877766555443
|
|
| >PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.8e-11 Score=117.39 Aligned_cols=156 Identities=14% Similarity=0.168 Sum_probs=124.1
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHhH-cCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcH
Q 003891 522 LTNGFITFGSFNNL--AKITPKVLQVWARILCA-VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 598 (788)
Q Consensus 522 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~-~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~ 598 (788)
.+++.++++.+++. .|....+++++..+... .|+..|+++|.+ .....+.......++. +++.|.+..+ ..
T Consensus 11 ~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~----~~~~~~~~~~~~~~~~-~~i~~~~~~~-~~ 84 (172)
T PF00534_consen 11 IPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDG----EYKKELKNLIEKLNLK-ENIIFLGYVP-DD 84 (172)
T ss_dssp T-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHC----CHHHHHHHHHHHTTCG-TTEEEEESHS-HH
T ss_pred CCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccc----cccccccccccccccc-cccccccccc-cc
Confidence 45677888888866 89999999999999875 899999999854 4566788888899997 8999999987 78
Q ss_pred HHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc--CCHHHHHHHHHHHhcC
Q 003891 599 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASD 675 (788)
Q Consensus 599 ~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~y~~~a~~l~~d 675 (788)
+....|+.+|+++-|+.+ +.|++.+|||++|+|||+-....+..-+ .-+.++++. .|.++.++...++..|
T Consensus 85 ~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~------~~~~~g~~~~~~~~~~l~~~i~~~l~~ 158 (172)
T PF00534_consen 85 ELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEII------NDGVNGFLFDPNDIEELADAIEKLLND 158 (172)
T ss_dssp HHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHS------GTTTSEEEESTTSHHHHHHHHHHHHHH
T ss_pred ccccccccceeccccccccccccccccccccccceeeccccCCceee------ccccceEEeCCCCHHHHHHHHHHHHCC
Confidence 899999999999999977 8899999999999999984433322211 113344444 4669999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 003891 676 VTALANLRMSLRDL 689 (788)
Q Consensus 676 ~~~~~~~r~~~~~~ 689 (788)
++.++.|+++.|++
T Consensus 159 ~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 159 PELRQKLGKNARER 172 (172)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999998864
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B .... |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.9e-11 Score=123.74 Aligned_cols=259 Identities=18% Similarity=0.095 Sum_probs=191.5
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Q 003891 33 SLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 111 (788)
Q Consensus 33 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A 111 (788)
.++-.|+|.++++-++ ....++. ..+....+.+++..+|+++..+.-... ..+....+...++..+...++.+.+
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHH
Confidence 3456799999998777 2233332 355678889999999999877655533 2233355667777777665677777
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 003891 112 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 191 (788)
Q Consensus 112 ~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 191 (788)
+..++..+........ ..+....|.++...|++++|++.+.+. .+.+.......++..+++++.|.+.++
T Consensus 86 l~~l~~~~~~~~~~~~-----~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 86 LEELKELLADQAGESN-----EIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHHHHHCCCTS---CH-----HHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHhcccccc-----HHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7766655433222111 112233455667789999999988764 567888888999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 003891 192 LAFHFNPHCAEACNNLGVIYKDRD--NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 269 (788)
Q Consensus 192 ~al~~~p~~~~~~~~la~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~ 269 (788)
.+.+.+.+..-.....+++....| ++.+|...|++..+..+.++..++.++.++..+|++++|.+.+++++..+|+++
T Consensus 156 ~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 156 NMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 998888876666666666666655 699999999998888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCChhh
Q 003891 270 EAYNNLGVLYRDAGSI-SLAIDAYEQCLKIDPDSRNA 305 (788)
Q Consensus 270 ~~~~~la~~~~~~g~~-~eA~~~~~~al~l~p~~~~a 305 (788)
+++.+++.+...+|+. +.+.+++.+....+|+++-.
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 9999999999999998 66778888888899987654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.9e-08 Score=100.64 Aligned_cols=300 Identities=15% Similarity=0.099 Sum_probs=216.9
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCH---HHH
Q 003891 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA--PAYYNLGVVYSELMQY---DTA 77 (788)
Q Consensus 3 i~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~---~~A 77 (788)
...|++|++...++..+ ..++...+..-..++.++.|.-+|+-++..-|.+- ..+-..-..--+-|+. +++
T Consensus 227 R~VyerAie~~~~d~~~----e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEA----EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 34455555544443322 12233334444455666666666666666666652 2222222222223332 222
Q ss_pred H-----HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhh---hhcCCH
Q 003891 78 L-----GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV---KLEGDI 149 (788)
Q Consensus 78 ~-----~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~---~~~g~~ 149 (788)
+ -.|++.++.+|.+.++|+.+-.+-...|+.+.-.+.|++|+..-|....-.+..-.+|.-+..++ ....+.
T Consensus 303 Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred HhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 2 23566677889999999999999999999999999999999988875543333333333333222 346789
Q ss_pred HHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 150 NQGVAYYKKALYYNWHY----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 225 (788)
Q Consensus 150 ~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 225 (788)
+.+.+.|+.++++-|.. +..|...|....++.+...|.+.+-.++...|.+ ...-....+-.++++++...++|+
T Consensus 383 ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 383 ERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999998864 5678889999999999999999999999999984 445555666778899999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 003891 226 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-A-EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 303 (788)
Q Consensus 226 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-~-~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~ 303 (788)
+-++..|.+..+|...|.+-..+|+.+.|...|+-|++...-+ + -.|......-...|.+++|...|++.++..+...
T Consensus 462 kfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 462 KFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred HHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 9999999999999999999999999999999999999875433 2 2455566666788999999999999999988765
Q ss_pred hhHHh
Q 003891 304 NAGQN 308 (788)
Q Consensus 304 ~a~~~ 308 (788)
++..
T Consensus 542 -vWis 545 (677)
T KOG1915|consen 542 -VWIS 545 (677)
T ss_pred -HHHh
Confidence 5554
|
|
| >cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-10 Score=129.36 Aligned_cols=175 Identities=16% Similarity=0.123 Sum_probs=136.2
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC--HHHHHHHHHHHHHcCCCCCcEEEcCCcCCc
Q 003891 522 LTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC--DSVRHRFLSTLEQLGLESLRVDLLPLILLN 597 (788)
Q Consensus 522 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~--~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~ 597 (788)
.+.+.++|+.++++ .|..+.+++++.++....|+.+|+++|++... ......+.+..+..|+. +++.|.|.++ .
T Consensus 216 ~~~~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~g~~~-~ 293 (398)
T cd03800 216 RDPDKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVI-DRVDFPGRVS-R 293 (398)
T ss_pred cCCCCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCC-ceEEEeccCC-H
Confidence 34556778888876 78899999999999988999999999876432 12234566777888998 8999999987 6
Q ss_pred HHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc--CCHHHHHHHHHHHhc
Q 003891 598 HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLAS 674 (788)
Q Consensus 598 ~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~y~~~a~~l~~ 674 (788)
++....+..+|++|-|+-+ +.|.+.+|||++|+|||+-....... ++.. +-.+++. .|++++++....+.+
T Consensus 294 ~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~~~e-----~i~~-~~~g~~~~~~~~~~l~~~i~~l~~ 367 (398)
T cd03800 294 EDLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAVGGPRD-----IVVD-GVTGLLVDPRDPEALAAALRRLLT 367 (398)
T ss_pred HHHHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEECCCCCHHH-----HccC-CCCeEEeCCCCHHHHHHHHHHHHh
Confidence 8889999999999999866 66889999999999999844322111 2221 2233443 479999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 003891 675 DVTALANLRMSLRDLMSKSPVCDGQNFALGLE 706 (788)
Q Consensus 675 d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e 706 (788)
|++.++.++++.++...+. |+.+.++..++
T Consensus 368 ~~~~~~~~~~~a~~~~~~~--~s~~~~~~~~~ 397 (398)
T cd03800 368 DPALRRRLSRAGLRRARAR--YTWERVAARLL 397 (398)
T ss_pred CHHHHHHHHHHHHHHHHHh--CCHHHHHHHHh
Confidence 9999999999988876444 88888888765
|
The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-10 Score=106.21 Aligned_cols=105 Identities=12% Similarity=0.047 Sum_probs=80.8
Q ss_pred hcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 003891 195 HFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 273 (788)
Q Consensus 195 ~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~ 273 (788)
.+. ++..+..+.+|..++..|++++|.+.|+-...++|.+...|++||.++..+|++++|+..|.+++.++|+++..++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 345 5566677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC
Q 003891 274 NLGVLYRDAGSISLAIDAYEQCLKID 299 (788)
Q Consensus 274 ~la~~~~~~g~~~eA~~~~~~al~l~ 299 (788)
++|.++...|+.+.|++.|+.++...
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88888888888888887777777665
|
|
| >PRK00654 glgA glycogen synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.9e-10 Score=130.01 Aligned_cols=166 Identities=15% Similarity=0.122 Sum_probs=123.3
Q ss_pred CCC-CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEE-cCCcCC
Q 003891 521 ALT-NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDL-LPLILL 596 (788)
Q Consensus 521 ~~~-~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~-~~~~~~ 596 (788)
+++ ++.+++++++|+ .|..+.+++++.+++.. +.+|+++|.| .......+++..+++| +++.+ .+. .
T Consensus 276 gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~--~~~lvivG~g--~~~~~~~l~~l~~~~~---~~v~~~~g~-~- 346 (466)
T PRK00654 276 GLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQ--GGQLVLLGTG--DPELEEAFRALAARYP---GKVGVQIGY-D- 346 (466)
T ss_pred CCCCCCCcEEEEeeccccccChHHHHHHHHHHHhc--CCEEEEEecC--cHHHHHHHHHHHHHCC---CcEEEEEeC-C-
Confidence 444 367789999987 89999999999998864 7899999876 2345677888777775 45654 444 2
Q ss_pred cHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcc--------------cc--c
Q 003891 597 NHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKH--------------LI--A 659 (788)
Q Consensus 597 ~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~--------------~i--a 659 (788)
.+.....|+.+|++|-|+.+ +.|.+.+|||++|+|||+ +++| |++| ++ .
T Consensus 347 ~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~-------~~~g-------G~~e~v~~~~~~~~~~~G~lv~~ 412 (466)
T PRK00654 347 EALAHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIV-------RRTG-------GLADTVIDYNPEDGEATGFVFDD 412 (466)
T ss_pred HHHHHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEE-------eCCC-------CccceeecCCCCCCCCceEEeCC
Confidence 23344678999999999988 669999999999999887 4444 3333 33 2
Q ss_pred CCHHHHHHHHHHHhc---CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 003891 660 KNEDEYVQLALQLAS---DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 714 (788)
Q Consensus 660 ~~~~~y~~~a~~l~~---d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 714 (788)
.|++++.+...++.. |++.+.+++.+.. . ..|+++..++++++.|+++..
T Consensus 413 ~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~---~--~~fsw~~~a~~~~~lY~~~~~ 465 (466)
T PRK00654 413 FNAEDLLRALRRALELYRQPPLWRALQRQAM---A--QDFSWDKSAEEYLELYRRLLG 465 (466)
T ss_pred CCHHHHHHHHHHHHHHhcCHHHHHHHHHHHh---c--cCCChHHHHHHHHHHHHHHhh
Confidence 478888887777665 7766666665443 2 459999999999999998764
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-08 Score=109.84 Aligned_cols=289 Identities=16% Similarity=0.091 Sum_probs=189.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Q 003891 32 TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 111 (788)
Q Consensus 32 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A 111 (788)
..+...++|++|.+...+.+...|++..+....-.++.+.++|++|+...++-....-. ....+..+.|.+++++.++|
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-NSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-chhhHHHHHHHHHcccHHHH
Confidence 45667899999999999999999999999999999999999999999655543322211 12227889999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCC--------------------------
Q 003891 112 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH-------------------------- 165 (788)
Q Consensus 112 ~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------------------------- 165 (788)
+..++ -.++.+.......+.+++. .++|++|...|+..++.+.+
T Consensus 99 lk~~~---~~~~~~~~ll~L~AQvlYr-------l~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~ 168 (652)
T KOG2376|consen 99 LKTLK---GLDRLDDKLLELRAQVLYR-------LERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVP 168 (652)
T ss_pred HHHHh---cccccchHHHHHHHHHHHH-------HhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhcc
Confidence 99998 3334433344444555555 45999999999888654322
Q ss_pred -----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------CC-------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 166 -----YADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--------PH-------CAEACNNLGVIYKDRDNLDKAVECYQ 225 (788)
Q Consensus 166 -----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~-------~~~~~~~la~~~~~~g~~~eA~~~~~ 225 (788)
..+.+++.+.++...|+|.+|++.+++++++. .. -..+...++.++..+|+.++|...|.
T Consensus 169 ~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 169 EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV 248 (652)
T ss_pred CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 33457888899999999999999999985431 11 13356778888999999999999999
Q ss_pred HHHhhCCCCHH----HHH---------------------------------------------HHHHHHHHcCCHHHHHH
Q 003891 226 MALSIKPNFSQ----SLN---------------------------------------------NLGVVYTVQGKMDAAAE 256 (788)
Q Consensus 226 ~al~~~p~~~~----~~~---------------------------------------------~la~~~~~~g~~~eA~~ 256 (788)
..++.++.+.. +-+ +.+.+.+..+..+.+.+
T Consensus 249 ~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~ 328 (652)
T KOG2376|consen 249 DIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRE 328 (652)
T ss_pred HHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 98887654432 111 11111111122122111
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHHHH
Q 003891 257 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWG 332 (788)
Q Consensus 257 ~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~~~ 332 (788)
...+.-...|....--........+...+.+|.+.+.+..+-.|.+.- ..-++.+...+..|+.+.+++....+.
T Consensus 329 ~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~-~v~L~~aQl~is~gn~~~A~~il~~~~ 403 (652)
T KOG2376|consen 329 LSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSK-VVLLLRAQLKISQGNPEVALEILSLFL 403 (652)
T ss_pred HHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhH-HHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 111111112222111111222222223688899999999998888732 234556777788899888888776444
|
|
| >cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=129.35 Aligned_cols=156 Identities=13% Similarity=0.151 Sum_probs=121.1
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHHHhH------cCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCc
Q 003891 523 TNGFITFGSFNNL--AKITPKVLQVWARILCA------VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLI 594 (788)
Q Consensus 523 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~------~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~ 594 (788)
+++.+++++.+++ .|..+.+++++..+.+. .|+.+|+++|.| +.++.+++.+++.|++ +.+.|.|.+
T Consensus 229 ~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G----~~~~~l~~~~~~~~l~-~~~~~~g~~ 303 (415)
T cd03816 229 EERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKG----PLKEKYLERIKELKLK-KVTIRTPWL 303 (415)
T ss_pred CCCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecC----ccHHHHHHHHHHcCCC-cEEEEcCcC
Confidence 3455667777765 79999999999988753 478999999987 5688999999999997 666666777
Q ss_pred CCcHHHHHhcccccEeecCCC----CCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHH
Q 003891 595 LLNHDHMQAYSLMDISLDTFP----YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLAL 670 (788)
Q Consensus 595 ~~~~~~~~~~~~~Dv~Ld~~~----~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~ 670 (788)
+ .++....|+.+|+++-+++ ++.+++++|||+||+|||+...... ..++ .-|..+++..|.+++.+...
T Consensus 304 ~-~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~-----~eiv-~~~~~G~lv~d~~~la~~i~ 376 (415)
T cd03816 304 S-AEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCI-----DELV-KHGENGLVFGDSEELAEQLI 376 (415)
T ss_pred C-HHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCH-----HHHh-cCCCCEEEECCHHHHHHHHH
Confidence 6 7889999999999985433 2358899999999999998432211 1122 22555666689999999999
Q ss_pred HHhcC---HHHHHHHHHHHHHHh
Q 003891 671 QLASD---VTALANLRMSLRDLM 690 (788)
Q Consensus 671 ~l~~d---~~~~~~~r~~~~~~~ 690 (788)
.|.+| ++.+.+|+++.++..
T Consensus 377 ~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 377 DLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred HHHhcCCCHHHHHHHHHHHHHhh
Confidence 99999 999999999888664
|
The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik. |
| >PRK14098 glycogen synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.2e-10 Score=128.02 Aligned_cols=175 Identities=14% Similarity=0.058 Sum_probs=125.2
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 003891 524 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 601 (788)
Q Consensus 524 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~ 601 (788)
.+.++|++++|+ .|..+.+++++.+++. ++.+|+++|.| ....++.+++..+++ +++|.|.+..+ ..+..
T Consensus 305 ~~~~~i~~vgRl~~~KG~d~li~a~~~l~~--~~~~lvivG~G--~~~~~~~l~~l~~~~---~~~V~~~g~~~-~~~~~ 376 (489)
T PRK14098 305 EETPLVGVIINFDDFQGAELLAESLEKLVE--LDIQLVICGSG--DKEYEKRFQDFAEEH---PEQVSVQTEFT-DAFFH 376 (489)
T ss_pred cCCCEEEEeccccccCcHHHHHHHHHHHHh--cCcEEEEEeCC--CHHHHHHHHHHHHHC---CCCEEEEEecC-HHHHH
Confidence 356789999977 7999999999999886 47999999976 233567788877776 37999999876 46667
Q ss_pred HhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccc--cCCHHHHHHHHHH---HhcC
Q 003891 602 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI--AKNEDEYVQLALQ---LASD 675 (788)
Q Consensus 602 ~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i--a~~~~~y~~~a~~---l~~d 675 (788)
..|+.+|++|-|+.+ +.|.+.+|||++|+|+|+........=+.. +..-|-.+++ ..|++++.+...+ +.+|
T Consensus 377 ~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~~ 454 (489)
T PRK14098 377 LAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSEDKGSGFIFHDYTPEALVAKLGEALALYHD 454 (489)
T ss_pred HHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCCCCceeEeCCCCHHHHHHHHHHHHHHHcC
Confidence 889999999999977 779999999999987776321111110000 0000222333 2477888777554 4578
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 003891 676 VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 713 (788)
Q Consensus 676 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 713 (788)
++.+++++.+. +. ..|+++..++++++.|+++.
T Consensus 455 ~~~~~~~~~~~---~~--~~fsw~~~a~~y~~lY~~~~ 487 (489)
T PRK14098 455 EERWEELVLEA---ME--RDFSWKNSAEEYAQLYRELL 487 (489)
T ss_pred HHHHHHHHHHH---hc--CCCChHHHHHHHHHHHHHHh
Confidence 87776665533 32 45999999999999999875
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-09 Score=108.22 Aligned_cols=255 Identities=18% Similarity=0.160 Sum_probs=169.6
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Q 003891 34 LKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 112 (788)
Q Consensus 34 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~ 112 (788)
+....+|.-|+.+++-.+..+.+. ......+|.|++.+|+|++|+..|+-+.+.+.-+.+.+.+++.+++-.|.|.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 456789999999999887665544 3677889999999999999999999998877778899999999999999999998
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003891 113 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 192 (788)
Q Consensus 113 ~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 192 (788)
....++ |+.+.... .++.++ .+.++- +-+-.|.+.++ +..+-...++.+.+..-.|++|++.|++
T Consensus 112 ~~~~ka----~k~pL~~R----Llfhla---hklndE-k~~~~fh~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 112 SIAEKA----PKTPLCIR----LLFHLA---HKLNDE-KRILTFHSSLQ---DTLEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHhhC----CCChHHHH----HHHHHH---HHhCcH-HHHHHHHHHHh---hhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 877665 44442211 122221 112222 22222333332 1223345566666666677777777777
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHH----------------H
Q 003891 193 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ--GKMDA----------------A 254 (788)
Q Consensus 193 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~e----------------A 254 (788)
.+.-+|+......+++.+|.++.-++-+.+.+.-.++..|+++-+.+.++..+++. |+..+ +
T Consensus 177 vL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~ 256 (557)
T KOG3785|consen 177 VLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFI 256 (557)
T ss_pred HHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhH
Confidence 77777776666777777777777777777777777777777776666665555443 22111 1
Q ss_pred HHHHH----------HHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhH
Q 003891 255 AEMIE----------KAIAANP----TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 255 ~~~l~----------kal~~~p----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
...++ -|++.-| ..|++..+|...|.++++.++|....+ +++|..+.-+
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~Ey 319 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEY 319 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHH
Confidence 11111 1122222 236789999999999999999988765 4677766543
|
|
| >PRK14099 glycogen synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.2e-10 Score=125.56 Aligned_cols=174 Identities=16% Similarity=0.120 Sum_probs=122.5
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcE-EEcCCcCCcHHHH
Q 003891 525 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRV-DLLPLILLNHDHM 601 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv-~~~~~~~~~~~~~ 601 (788)
+.++||+++|+ .|..+.+++++.++++ .+.+|+++|.| .+..++.+++..++++ +++ .|+|. .++..
T Consensus 294 ~~~li~~VgRL~~~KG~d~Li~A~~~l~~--~~~~lvivG~G--~~~~~~~l~~l~~~~~---~~v~~~~G~---~~~l~ 363 (485)
T PRK14099 294 DALLLGVISRLSWQKGLDLLLEALPTLLG--EGAQLALLGSG--DAELEARFRAAAQAYP---GQIGVVIGY---DEALA 363 (485)
T ss_pred CCcEEEEEecCCccccHHHHHHHHHHHHh--cCcEEEEEecC--CHHHHHHHHHHHHHCC---CCEEEEeCC---CHHHH
Confidence 56789999887 8999999999998876 36899999876 3346677777776654 455 68886 45666
Q ss_pred Hhc-ccccEeecCCCC-CCchhHHHHhhhCCc-eeecCCCccCccchh--HHHhhhC-Ccccc--cCCHHHHHHHHHH--
Q 003891 602 QAY-SLMDISLDTFPY-AGTTTTCESLYMGVP-CVTMAGSVHAHNVGV--SLLTKVG-LKHLI--AKNEDEYVQLALQ-- 671 (788)
Q Consensus 602 ~~~-~~~Dv~Ld~~~~-~g~~t~~eal~~GvP-vvt~~g~~~~~r~~~--~~l~~~g-l~~~i--a~~~~~y~~~a~~-- 671 (788)
..| ..+|+||-|+-+ +.|.+.+|||++|+| |||-.|.. ..-+.. ......| -.+++ ..|++++.+...+
T Consensus 364 ~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl-~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~ 442 (485)
T PRK14099 364 HLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGL-ADTVVDANEMAIATGVATGVQFSPVTADALAAALRKTA 442 (485)
T ss_pred HHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCc-cceeecccccccccCCCceEEeCCCCHHHHHHHHHHHH
Confidence 665 579999999987 779999999999965 55422211 000000 0000001 12333 2478888887765
Q ss_pred -HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 003891 672 -LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 714 (788)
Q Consensus 672 -l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 714 (788)
+.+|++.+++|+++.+. ..|+++..++++++.|+++..
T Consensus 443 ~l~~d~~~~~~l~~~~~~-----~~fSw~~~a~~y~~lY~~l~~ 481 (485)
T PRK14099 443 ALFADPVAWRRLQRNGMT-----TDVSWRNPAQHYAALYRSLVA 481 (485)
T ss_pred HHhcCHHHHHHHHHHhhh-----hcCChHHHHHHHHHHHHHHHh
Confidence 78899888888876542 359999999999999999875
|
|
| >TIGR02095 glgA glycogen/starch synthases, ADP-glucose type | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.5e-10 Score=127.48 Aligned_cols=168 Identities=14% Similarity=0.059 Sum_probs=123.8
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 003891 525 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 602 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 602 (788)
+.+++++++|+ .|..+.+++++.++.+. +.+|+++|.|. +...+.+++...+.+ +++.|.+..+ .++...
T Consensus 290 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g~--~~~~~~l~~~~~~~~---~~v~~~~~~~-~~~~~~ 361 (473)
T TIGR02095 290 DVPLFGVISRLTQQKGVDLLLAALPELLEL--GGQLVVLGTGD--PELEEALRELAERYP---GNVRVIIGYD-EALAHL 361 (473)
T ss_pred CCCEEEEEecCccccChHHHHHHHHHHHHc--CcEEEEECCCC--HHHHHHHHHHHHHCC---CcEEEEEcCC-HHHHHH
Confidence 67789999987 89999999999998864 48999998762 345667777666653 5687777654 455567
Q ss_pred hcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchh--HHHhh-----hCCcccc--cCCHHHHHHHHHHH
Q 003891 603 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTK-----VGLKHLI--AKNEDEYVQLALQL 672 (788)
Q Consensus 603 ~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~--~~l~~-----~gl~~~i--a~~~~~y~~~a~~l 672 (788)
.|+.+|++|-|+.+ +.|.+.+|||++|+|||+ +++|+ .++.. .+-.+++ ..|++++.+...++
T Consensus 362 ~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~-------s~~gg~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~ 434 (473)
T TIGR02095 362 IYAGADFILMPSRFEPCGLTQLYAMRYGTVPIV-------RRTGGLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRA 434 (473)
T ss_pred HHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEE-------ccCCCccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHH
Confidence 89999999999988 668999999999999997 44441 00000 0022233 24788888887776
Q ss_pred hc----CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 003891 673 AS----DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 712 (788)
Q Consensus 673 ~~----d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 712 (788)
.. |++.+++++++.. ...|+++..++++++.|+++
T Consensus 435 l~~~~~~~~~~~~~~~~~~-----~~~fsw~~~a~~~~~~Y~~l 473 (473)
T TIGR02095 435 LRLYRQDPSLWEALQKNAM-----SQDFSWDKSAKQYVELYRSL 473 (473)
T ss_pred HHHHhcCHHHHHHHHHHHh-----ccCCCcHHHHHHHHHHHHhC
Confidence 66 8888888777553 23599999999999999863
|
This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.1e-10 Score=102.25 Aligned_cols=107 Identities=15% Similarity=0.154 Sum_probs=99.6
Q ss_pred HHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 003891 160 LYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 238 (788)
Q Consensus 160 l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 238 (788)
..+. ++..+..+.+|..++..|++++|...|+.+..++|.+...|++||.++..+|++++|+..|.+++.++|+++..+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 3455 667788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 003891 239 NNLGVVYTVQGKMDAAAEMIEKAIAANP 266 (788)
Q Consensus 239 ~~la~~~~~~g~~~eA~~~l~kal~~~p 266 (788)
.++|.++...|+.+.|.+.|+.++....
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998863
|
|
| >PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-09 Score=121.55 Aligned_cols=168 Identities=16% Similarity=0.131 Sum_probs=117.4
Q ss_pred EEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHH-HHHHHHHHHcCCCC------------CcEEEcCCc
Q 003891 528 TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR-HRFLSTLEQLGLES------------LRVDLLPLI 594 (788)
Q Consensus 528 ~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~-~~l~~~~~~~gi~~------------~rv~~~~~~ 594 (788)
++.+..+..|....++++|.++.+..|+.+|+|+|.+ +.+ ..+++.+++.|+.. .+|.+.+.
T Consensus 235 vil~~~~~~~~~~~ll~A~~~l~~~~~~~~liivG~g----~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~- 309 (425)
T PRK05749 235 VWIAASTHEGEEELVLDAHRALLKQFPNLLLILVPRH----PERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDT- 309 (425)
T ss_pred EEEEeCCCchHHHHHHHHHHHHHHhCCCcEEEEcCCC----hhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEec-
Confidence 3444556677777889999999998999999999876 554 67889999999861 12333332
Q ss_pred CCcHHHHHhcccccEe-ecCCC-CCCchhHHHHhhhCCceeecCCCccCccchh--HHHhhhCCcccccCCHHHHHHHHH
Q 003891 595 LLNHDHMQAYSLMDIS-LDTFP-YAGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLIAKNEDEYVQLAL 670 (788)
Q Consensus 595 ~~~~~~~~~~~~~Dv~-Ld~~~-~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~--~~l~~~gl~~~ia~~~~~y~~~a~ 670 (788)
..+....|+.+||+ +-++- .+||.+.+|||++|+|||+-+. . +..+. ..+...|.- +...|.+++.+...
T Consensus 310 --~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~--~-~~~~e~~~~~~~~g~~-~~~~d~~~La~~l~ 383 (425)
T PRK05749 310 --MGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPH--T-FNFKEIFERLLQAGAA-IQVEDAEDLAKAVT 383 (425)
T ss_pred --HHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCC--c-cCHHHHHHHHHHCCCe-EEECCHHHHHHHHH
Confidence 35788899999994 53443 4788899999999999997321 1 11111 122222321 12579999999999
Q ss_pred HHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 003891 671 QLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 711 (788)
Q Consensus 671 ~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 711 (788)
.|.+|++.+++|+++.++.+.+. .+.++.+-+.+.+
T Consensus 384 ~ll~~~~~~~~m~~~a~~~~~~~-----~~~~~~~~~~l~~ 419 (425)
T PRK05749 384 YLLTDPDARQAYGEAGVAFLKQN-----QGALQRTLQLLEP 419 (425)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhC-----ccHHHHHHHHHHH
Confidence 99999999999999999887543 2444444444444
|
|
| >PHA01633 putative glycosyl transferase group 1 | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.2e-10 Score=117.29 Aligned_cols=161 Identities=19% Similarity=0.198 Sum_probs=107.7
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcC---CcC
Q 003891 525 GFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLP---LIL 595 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~---~~~ 595 (788)
+.++|++++|+ .|..+.++++|.++.++.|+ .+|+++|.+ .++++++. ++|.|++ .++
T Consensus 147 ~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~------------~~~~l~l~-~~V~f~g~~G~~~ 213 (335)
T PHA01633 147 DTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISHK------------QFTQLEVP-ANVHFVAEFGHNS 213 (335)
T ss_pred CCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcHH------------HHHHcCCC-CcEEEEecCCCCC
Confidence 34678888876 99999999999999988886 467776521 23556776 8999985 444
Q ss_pred CcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchh--HHH-h----------hhCCccc-c-c
Q 003891 596 LNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLL-T----------KVGLKHL-I-A 659 (788)
Q Consensus 596 ~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~--~~l-~----------~~gl~~~-i-a 659 (788)
.++....|+.+|+||-|+-+ +.|.+.+|||+||+|||+-....+..-+|. ++| . .-|. .| + .
T Consensus 214 -~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~-g~~~~~ 291 (335)
T PHA01633 214 -REYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQ-KWKIHK 291 (335)
T ss_pred -HHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCc-eeeecC
Confidence 57888999999999999977 779999999999999998543333222221 111 0 0011 12 2 2
Q ss_pred CCHHHHHHHHHHH--hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 003891 660 KNEDEYVQLALQL--ASDVTALANLRMSLRDLMSKSPVCDGQNFALGLE 706 (788)
Q Consensus 660 ~~~~~y~~~a~~l--~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e 706 (788)
.|++++++...++ ..|++.+ ++.++++.. -||.+...++++
T Consensus 292 ~d~~~la~ai~~~~~~~~~~~~---~~~~~~~a~---~f~~~~~~~~~~ 334 (335)
T PHA01633 292 FQIEDMANAIILAFELQDREER---SMKLKELAK---KYDIRNLYTRFL 334 (335)
T ss_pred CCHHHHHHHHHHHHhccChhhh---hHHHHHHHH---hcCHHHHHHHhh
Confidence 3777777776666 3344333 444454432 278888777765
|
|
| >PHA01630 putative group 1 glycosyl transferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.9e-10 Score=118.32 Aligned_cols=169 Identities=13% Similarity=0.064 Sum_probs=112.6
Q ss_pred CCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 003891 525 GFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 602 (788)
Q Consensus 525 ~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 602 (788)
+.++++...+ ..|..+.++++|.++.+..|+.+|+++|.+. ...++ .++. . +.+.++ .++...
T Consensus 141 ~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~----~~~~l------~~~~-~---~~~~v~-~~~l~~ 205 (331)
T PHA01630 141 HPCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNM----LDPRL------FGLN-G---VKTPLP-DDDIYS 205 (331)
T ss_pred CCEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCcc----cchhh------cccc-c---eeccCC-HHHHHH
Confidence 3445555544 4899999999999999888999999998542 11111 1332 2 233455 578889
Q ss_pred hcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchh---HHHhh------------hCCcccccCCHHHHH
Q 003891 603 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV---SLLTK------------VGLKHLIAKNEDEYV 666 (788)
Q Consensus 603 ~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~---~~l~~------------~gl~~~ia~~~~~y~ 666 (788)
.|+.+|+++-|+.+ +.|.+.+|||++|+|||+.....+..-+.. +++-. -+..-++..|.++..
T Consensus 206 ~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~~ 285 (331)
T PHA01630 206 LFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDAY 285 (331)
T ss_pred HHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccccccCCCHHHHH
Confidence 99999999999977 569999999999999998443211111100 00000 011123345788888
Q ss_pred HHHHHHhcC---HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 003891 667 QLALQLASD---VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 711 (788)
Q Consensus 667 ~~a~~l~~d---~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 711 (788)
+.++++..| ++.++.++.+.+.. . .-|+.+..++++++.|++
T Consensus 286 ~~ii~~l~~~~~~~~~~~~~~~~~~~-~--~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 286 QKLLEALANWTPEKKKENLEGRAILY-R--ENYSYNAIAKMWEKILEK 330 (331)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHH-H--HhCCHHHHHHHHHHHHhc
Confidence 899998887 34555555554433 3 348999999999999964
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.6e-09 Score=105.29 Aligned_cols=266 Identities=15% Similarity=0.118 Sum_probs=173.4
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 003891 35 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 114 (788)
Q Consensus 35 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 114 (788)
.+..+|..|++++..-.+.+|.+-..+..+|.||+...+|..|..+|++.-...|.........+..+++.+.+..|+..
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003891 115 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 194 (788)
Q Consensus 115 ~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 194 (788)
....... ++ .. ..++...+-+....+++..+....++.- ..+.++...+.|-+.++.|+++.|++-|+.++
T Consensus 101 ~~~~~D~-~~---L~---~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 101 AFLLLDN-PA---LH---SRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred HHHhcCC-HH---HH---HHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHH
Confidence 7665432 11 11 1222222333344455555544443321 11455666777777777777777777777777
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCC-------------------------HHHHHHHHHHH
Q 003891 195 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI----KPNF-------------------------SQSLNNLGVVY 245 (788)
Q Consensus 195 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~----~p~~-------------------------~~~~~~la~~~ 245 (788)
+...-++-.-++++.++++.+++..|+++..+.++. .|+. .++++..+-++
T Consensus 172 qvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIe 251 (459)
T KOG4340|consen 172 QVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIE 251 (459)
T ss_pred hhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhh
Confidence 776666677777777777777777777776665543 2211 12444555666
Q ss_pred HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHH
Q 003891 246 TVQGKMDAAAEMIEKAIAAN--PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 310 (788)
Q Consensus 246 ~~~g~~~eA~~~l~kal~~~--p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~l 310 (788)
++.++++.|.+.+...--.. .-+|..+.+++..- ..+++.+..+-++-.++++|-.++...|++
T Consensus 252 yq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlL 317 (459)
T KOG4340|consen 252 YQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLL 317 (459)
T ss_pred hhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHH
Confidence 67777776665443221000 01233444444322 233444445555555555554445444443
|
|
| >cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.6e-10 Score=120.67 Aligned_cols=169 Identities=15% Similarity=0.158 Sum_probs=127.8
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 003891 522 LTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 599 (788)
Q Consensus 522 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~ 599 (788)
...+.++|+++++. .|..+.+++++.++... |+.+|+++|.+ .....+.+.....++ ++|.|.|.++ .++
T Consensus 216 ~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~-~~~~l~i~G~~----~~~~~~~~~~~~~~~--~~v~~~g~~~-~~~ 287 (394)
T cd03794 216 GLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDR-PDIRFLIVGDG----PEKEELKELAKALGL--DNVTFLGRVP-KEE 287 (394)
T ss_pred CCCCcEEEEEecCcccccCHHHHHHHHHHHhhc-CCeEEEEeCCc----ccHHHHHHHHHHcCC--CcEEEeCCCC-hHH
Confidence 44566778888866 88999999999999887 99999999876 445556665566666 4799999876 688
Q ss_pred HHHhcccccEeecCCCCCC------chhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc-CCHHHHHHHHHHH
Q 003891 600 HMQAYSLMDISLDTFPYAG------TTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA-KNEDEYVQLALQL 672 (788)
Q Consensus 600 ~~~~~~~~Dv~Ld~~~~~g------~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia-~~~~~y~~~a~~l 672 (788)
....|+.+|+++-|+...+ +++++|||++|+|||+........-+ ...+..-++. .|.+++++...++
T Consensus 288 ~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~-----~~~~~g~~~~~~~~~~l~~~i~~~ 362 (394)
T cd03794 288 LPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELV-----EEAGAGLVVPPGDPEALAAAILEL 362 (394)
T ss_pred HHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhh-----ccCCcceEeCCCCHHHHHHHHHHH
Confidence 9999999999998886643 45689999999999986544322211 1111222232 3899999999999
Q ss_pred hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 003891 673 ASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 705 (788)
Q Consensus 673 ~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 705 (788)
..|++.+..++++.++...+. |+++.+++++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~ 393 (394)
T cd03794 363 LDDPEERAEMGENGRRYVEEK--FSREKLAERL 393 (394)
T ss_pred HhChHHHHHHHHHHHHHHHHh--hcHHHHHHhc
Confidence 999999999999988876533 7888887765
|
wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.1e-09 Score=109.78 Aligned_cols=158 Identities=17% Similarity=0.150 Sum_probs=145.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 003891 164 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 243 (788)
Q Consensus 164 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 243 (788)
|....+++..+..++..|++++|+..++..++..|+++..+...+.++.+.++.++|.+.+++++...|+.+....++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCc
Q 003891 244 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD 321 (788)
Q Consensus 244 ~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~ 321 (788)
+|.+.|++.+|+..++..+..+|+++..|..|+..|..+|+..+|...+.+.+.+......+...+..+......|..
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~ 460 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVKLGFP 460 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCCcH
Confidence 999999999999999999999999999999999999999999999999999998888877776655555555555544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.1e-08 Score=105.04 Aligned_cols=153 Identities=20% Similarity=0.151 Sum_probs=105.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 003891 55 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 134 (788)
Q Consensus 55 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 134 (788)
|....++|..+..++..|++++|+..+...+...|+|+..+...+.++...++..+|.+.+++++.++|+......+++.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 56677777777777777777777777777777777777777777777777777777777777777777776555544444
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 003891 135 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 214 (788)
Q Consensus 135 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 214 (788)
++.. .|++++|+..++..+..+|+++..|..++..|..+|+..+|...+ +..|...
T Consensus 383 all~-------~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~ 438 (484)
T COG4783 383 ALLK-------GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALA 438 (484)
T ss_pred HHHh-------cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhC
Confidence 4444 446667777777777777777777777777777777665554433 3445556
Q ss_pred CCHHHHHHHHHHHHhhC
Q 003891 215 DNLDKAVECYQMALSIK 231 (788)
Q Consensus 215 g~~~eA~~~~~~al~~~ 231 (788)
|++++|+..+..+.+..
T Consensus 439 G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 439 GRLEQAIIFLMRASQQV 455 (484)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 66777776666666554
|
|
| >cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.6e-09 Score=118.05 Aligned_cols=144 Identities=12% Similarity=0.091 Sum_probs=102.3
Q ss_pred CCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecC
Q 003891 534 NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDT 613 (788)
Q Consensus 534 ~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~ 613 (788)
...|..+.+++++.+ .| .+|+++|.+ +..+.+++ +.. ++|.|+|.++ .++....|..+|+++-|
T Consensus 205 ~~~K~~~~li~a~~~----~~-~~l~ivG~g----~~~~~l~~-----~~~-~~V~~~g~~~-~~~~~~~~~~ad~~v~p 268 (351)
T cd03804 205 VPYKRIDLAIEAFNK----LG-KRLVVIGDG----PELDRLRA-----KAG-PNVTFLGRVS-DEELRDLYARARAFLFP 268 (351)
T ss_pred ccccChHHHHHHHHH----CC-CcEEEEECC----hhHHHHHh-----hcC-CCEEEecCCC-HHHHHHHHHhCCEEEEC
Confidence 347888888888765 45 789999877 44445444 454 8999999997 68899999999999998
Q ss_pred CCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccc--cCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 003891 614 FPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI--AKNEDEYVQLALQLASDVTALANLRMSLRDLMS 691 (788)
Q Consensus 614 ~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i--a~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~ 691 (788)
+..+.|.+.+|||+||+|||+........-+ . -|-.+++ ..|++++++....+.+|++ .+++.++++..
T Consensus 269 s~e~~g~~~~Eama~G~Pvi~~~~~~~~e~i-----~-~~~~G~~~~~~~~~~la~~i~~l~~~~~---~~~~~~~~~~~ 339 (351)
T cd03804 269 AEEDFGIVPVEAMASGTPVIAYGKGGALETV-----I-DGVTGILFEEQTVESLAAAVERFEKNED---FDPQAIRAHAE 339 (351)
T ss_pred CcCCCCchHHHHHHcCCCEEEeCCCCCccee-----e-CCCCEEEeCCCCHHHHHHHHHHHHhCcc---cCHHHHHHHHH
Confidence 8877789999999999999985432221111 1 1223333 3578999999999999984 23333333322
Q ss_pred cCCCCChHHHHHHH
Q 003891 692 KSPVCDGQNFALGL 705 (788)
Q Consensus 692 ~~~~~~~~~~~~~~ 705 (788)
.|+.++|.+++
T Consensus 340 ---~~~~~~~~~~~ 350 (351)
T cd03804 340 ---RFSESRFREKI 350 (351)
T ss_pred ---hcCHHHHHHHh
Confidence 27888888765
|
wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea. |
| >PLN02605 monogalactosyldiacylglycerol synthase | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.8e-09 Score=116.40 Aligned_cols=265 Identities=12% Similarity=0.090 Sum_probs=153.1
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCCCCccc--ccc-c-----CCCCeEEecccC---CCCCCCCCccEEEecCCCCCcCc-c
Q 003891 423 KKVAAMVREDKIDILVELTGHTANNKLG--MMA-C-----QPAPVQVTWIGY---PNTTGLPTIDYRITDSLADPPET-K 490 (788)
Q Consensus 423 ~~~a~~i~~d~idilvdl~g~t~~~~~~--~~a-~-----r~Apvq~~~~g~---~~ttg~~~~Dy~i~d~~~~p~~~-~ 490 (788)
..+.+.|++.++||+|-. |.-.++.. ++. + ...|+=+..-.+ ....-.+.+|++++-.-...... +
T Consensus 90 ~~l~~~i~~~~pDvIi~t--hp~~~~~~~~~l~~~~~~~~~~~p~~~~~tD~~~~~~~w~~~~~d~~~~~s~~~~~~l~~ 167 (382)
T PLN02605 90 REVAKGLMKYKPDIIVSV--HPLMQHVPLRVLRWQGKELGKKIPFTTVVTDLGTCHPTWFHKGVTRCFCPSEEVAKRALK 167 (382)
T ss_pred HHHHHHHHhcCcCEEEEe--CcCcccCHHHHHHHHhhccCCCCCEEEEECCCCCcCcccccCCCCEEEECCHHHHHHHHH
Confidence 467789999999999863 43323221 221 1 134542211111 12234567888885321111111 1
Q ss_pred CCC-ccceEEcCCCc-cccCCCC-CCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHh----HcCCcEE-EE
Q 003891 491 QKH-VEELIRLPECF-LCYTPSP-EAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILC----AVPNSRL-VV 560 (788)
Q Consensus 491 ~~~-~e~l~~lp~~~-~~~~~~~-~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~----~~p~~~l-~l 560 (788)
... .+++...+... -.|.++. .....+...+++++.++++.+++. .|....+++.+.+++. ..|+.++ ++
T Consensus 168 ~g~~~~ki~v~g~~v~~~f~~~~~~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi 247 (382)
T PLN02605 168 RGLEPSQIRVYGLPIRPSFARAVRPKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVI 247 (382)
T ss_pred cCCCHHHEEEECcccCHhhccCCCCHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEE
Confidence 112 35565554221 0121111 111122345677777777777754 7777888888877652 2366654 44
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCcc
Q 003891 561 KCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVH 640 (788)
Q Consensus 561 ~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~ 640 (788)
.|.+ ...++++++ .... .+|.|+|.+. +...+|+.+|+++.+ +|+.|++|||++|+|||+..--.-
T Consensus 248 ~G~~---~~~~~~L~~----~~~~-~~v~~~G~~~---~~~~l~~aaDv~V~~---~g~~ti~EAma~g~PvI~~~~~pg 313 (382)
T PLN02605 248 CGRN---KKLQSKLES----RDWK-IPVKVRGFVT---NMEEWMGACDCIITK---AGPGTIAEALIRGLPIILNGYIPG 313 (382)
T ss_pred ECCC---HHHHHHHHh----hccc-CCeEEEeccc---cHHHHHHhCCEEEEC---CCcchHHHHHHcCCCEEEecCCCc
Confidence 4543 233444443 3333 5799999975 466677779999963 367899999999999998652111
Q ss_pred CccchhHHHhhhCCcccccCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 003891 641 AHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASD-VTALANLRMSLRDLMSKSPVCDGQNFALGLES 707 (788)
Q Consensus 641 ~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~ 707 (788)
....++-.+...|.. +...|+++..+...+|..| ++.+++|+++.++.... ......+..+.+
T Consensus 314 qe~gn~~~i~~~g~g-~~~~~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~~---~a~~~i~~~l~~ 377 (382)
T PLN02605 314 QEEGNVPYVVDNGFG-AFSESPKEIARIVAEWFGDKSDELEAMSENALKLARP---EAVFDIVHDLHE 377 (382)
T ss_pred cchhhHHHHHhCCce-eecCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---chHHHHHHHHHH
Confidence 112233445555654 3458999999999999988 99999999998876432 245666655543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.5e-08 Score=97.50 Aligned_cols=275 Identities=18% Similarity=0.134 Sum_probs=210.7
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
||+++..-.+.+|.+... +..+|.+|+...+|..|..+|++.-...|......+..+..+++.+.+..|+...
T Consensus 29 aI~~l~s~~Er~p~~rAg-------LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~ 101 (459)
T KOG4340|consen 29 AIQLLGSELERSPRSRAG-------LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVA 101 (459)
T ss_pred HHHHHHHHHhcCccchHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 566677777778876655 7778899999999999999999999999999999999999999999999999988
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH
Q 003891 82 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 161 (788)
Q Consensus 82 ~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~ 161 (788)
........-..++...-+-+.+..+++..+....++.-. .+. +....+.|.+..+.|++++|++-|+.+++
T Consensus 102 ~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~------Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 102 FLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENE------ADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCc------cchhccchheeeccccHHHHHHHHHHHHh
Confidence 776543222345555667777788888887776665421 111 34556677777888999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCC-------------------------CHHHHHHHHHHHH
Q 003891 162 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF----NPH-------------------------CAEACNNLGVIYK 212 (788)
Q Consensus 162 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~-------------------------~~~~~~~la~~~~ 212 (788)
...-++-.-++++.++++.++++.|+++..+.++. .|+ -.++++..+.+++
T Consensus 173 vsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIey 252 (459)
T KOG4340|consen 173 VSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEY 252 (459)
T ss_pred hcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhh
Confidence 99888889999999999999999999998887764 332 1345667788899
Q ss_pred HcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 213 DRDNLDKAVECYQMALSIK--PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 290 (788)
Q Consensus 213 ~~g~~~eA~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~ 290 (788)
+.++++.|.+.+...--.+ .-++..+.+++..- ..+++.+...-++=.+.++|--++.+.++-.+|.+..-++-|..
T Consensus 253 q~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAAD 331 (459)
T KOG4340|consen 253 QLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAAD 331 (459)
T ss_pred hcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHH
Confidence 9999999887664321111 12355677776543 34667777777788888899778889999999998888887776
Q ss_pred HHH
Q 003891 291 AYE 293 (788)
Q Consensus 291 ~~~ 293 (788)
.+-
T Consensus 332 vLA 334 (459)
T KOG4340|consen 332 VLA 334 (459)
T ss_pred HHh
Confidence 543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.7e-09 Score=115.40 Aligned_cols=109 Identities=19% Similarity=0.221 Sum_probs=102.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 106 (788)
+...|..++..|++++|+.+|+++++.+|++..+++++|.+|..+|++++|+..++++++++|.++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 56678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 003891 107 DLESAIACYERCLAVSPNFEIAKNNMAIA 135 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~ 135 (788)
++++|+..|+++++++|++......+..+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999998665554433
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.06 E-value=1e-08 Score=107.71 Aligned_cols=182 Identities=22% Similarity=0.274 Sum_probs=119.2
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 99 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 178 (788)
Q Consensus 99 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 178 (788)
|.+|...+++++|.+.|.++.+...+.. .....+..+...+.++... ++++|+.+|++++. +|.
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~-~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~--------------~y~ 105 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLG-DKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIE--------------IYR 105 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHH--------------HHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHH--------------HHH
Confidence 5666777777777777777765533211 1223345555555555444 77777777777763 455
Q ss_pred HcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHcCCH
Q 003891 179 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-DNLDKAVECYQMALSIKP--NF----SQSLNNLGVVYTVQGKM 251 (788)
Q Consensus 179 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~ 251 (788)
..|++..|-. .+..+|.+|... |++++|+++|++|++... +. ...+..+|.++...|+|
T Consensus 106 ~~G~~~~aA~--------------~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y 171 (282)
T PF14938_consen 106 EAGRFSQAAK--------------CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRY 171 (282)
T ss_dssp HCT-HHHHHH--------------HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-H
T ss_pred hcCcHHHHHH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCH
Confidence 6666666543 444567777777 788888888888877632 11 33667888999999999
Q ss_pred HHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHH
Q 003891 252 DAAAEMIEKAIAANPTY-------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 310 (788)
Q Consensus 252 ~eA~~~l~kal~~~p~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~l 310 (788)
++|++.|++.....-++ ...++..+.|+...|+...|...+++....+|......-..+
T Consensus 172 ~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 172 EEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 99999999988753221 245667888999999999999999999999998766554443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.8e-09 Score=114.26 Aligned_cols=105 Identities=16% Similarity=0.165 Sum_probs=52.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 003891 174 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 253 (788)
Q Consensus 174 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e 253 (788)
|..++..|++++|+..|+++++.+|++..++.++|.++..+|++++|+..++++++++|+++.+++.+|.++..+|++++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 44444445555555555555555555445555555555555555555555555555555444445555555555555555
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Q 003891 254 AAEMIEKAIAANPTYAEAYNNLGVL 278 (788)
Q Consensus 254 A~~~l~kal~~~p~~~~~~~~la~~ 278 (788)
|+..|+++++++|++..+...++.+
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 5555555555555444444444444
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.4e-07 Score=100.48 Aligned_cols=271 Identities=14% Similarity=0.177 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---------------------------------------------
Q 003891 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH--------------------------------------------- 56 (788)
Q Consensus 22 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------------------------------------------- 56 (788)
.++.++..||..|...|.+++|...|++++..--.
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence 35667888999999999999999999999875211
Q ss_pred ----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-----CHHHHHHHHHHHHHCCCH
Q 003891 57 ----------------------YAPAYYNLGVVYSELMQYDTALGCYEKAAL-ERPM-----YAEAYCNMGVIYKNRGDL 108 (788)
Q Consensus 57 ----------------------~~~~~~~lg~~~~~~g~~~~A~~~~~kal~-~~p~-----~~~~~~~la~~~~~~g~~ 108 (788)
+..-|... +-+..|+..+-+..|.+|++ .+|. -...|..+|..|...|+.
T Consensus 326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHHhccchHHHHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 11111110 11122334444444444443 2332 124555566666666666
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCC------------------CHHHH
Q 003891 109 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH------------------YADAM 170 (788)
Q Consensus 109 ~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~------------------~~~~~ 170 (788)
+.|...|+++.+..-... ..++.++..-|.......+++.|.++.+++...-.. ...+|
T Consensus 404 ~~aRvifeka~~V~y~~v---~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiW 480 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTV---EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIW 480 (835)
T ss_pred HHHHHHHHHhhcCCccch---HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHH
Confidence 666666666655433222 233445555555555555666666666555432111 11234
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHH---
Q 003891 171 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--PNFSQSLNNLGVVY--- 245 (788)
Q Consensus 171 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~la~~~--- 245 (788)
..++.+....|-++.....|++.+.+.--.+....|.|..+....-++++.+.|++.+.+. |.-.++|...-..+
T Consensus 481 s~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r 560 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR 560 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH
Confidence 4555555555666666666666666555555666666666666666666666666665553 23333333322221
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003891 246 TVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDAGSISLAIDAYEQCLK 297 (788)
Q Consensus 246 ~~~g~~~eA~~~l~kal~~~p~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~ 297 (788)
+.....+.|..+|++|++..|.. ..++...+.+-.+-|-...|+..|+++-.
T Consensus 561 ygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 561 YGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 22234556666666666655422 12344455555555666666666665543
|
|
| >PRK13609 diacylglycerol glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.1e-09 Score=114.89 Aligned_cols=266 Identities=11% Similarity=0.094 Sum_probs=149.7
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCCCCcccccccCC--CCeE--EecccCCCCCCCCCccEEEecCCCCCcCc--cCCCccc
Q 003891 423 KKVAAMVREDKIDILVELTGHTANNKLGMMACQP--APVQ--VTWIGYPNTTGLPTIDYRITDSLADPPET--KQKHVEE 496 (788)
Q Consensus 423 ~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~--Apvq--~~~~g~~~ttg~~~~Dy~i~d~~~~p~~~--~~~~~e~ 496 (788)
..+.+.|++.++||+|-..+.. +-..+.+.+- -|+= ++..|.+...-.+.+|.+++-.-..-... ...-.|+
T Consensus 94 ~~l~~~l~~~~pD~Vi~~~~~~--~~~~~~~~~~~~ip~~~~~td~~~~~~~~~~~ad~i~~~s~~~~~~l~~~gi~~~k 171 (380)
T PRK13609 94 KRLKLLLQAEKPDIVINTFPII--AVPELKKQTGISIPTYNVLTDFCLHKIWVHREVDRYFVATDHVKKVLVDIGVPPEQ 171 (380)
T ss_pred HHHHHHHHHhCcCEEEEcChHH--HHHHHHHhcCCCCCeEEEeCCCCCCcccccCCCCEEEECCHHHHHHHHHcCCChhH
Confidence 5677889999999999532222 1111112222 2332 11123233333456777665321000000 0112245
Q ss_pred eEEcCCCcc-ccCCCCCCCCCCCCCCCCCC-CeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHH
Q 003891 497 LIRLPECFL-CYTPSPEAGPVCPTPALTNG-FITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRH 572 (788)
Q Consensus 497 l~~lp~~~~-~~~~~~~~~~~~~~~~~~~~-~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~ 572 (788)
+...+.... .|.+.......+...+++.+ .+++...++. .|....+++.+ ...|+.++++++++ ....++
T Consensus 172 i~v~G~p~~~~f~~~~~~~~~~~~~~l~~~~~~il~~~G~~~~~k~~~~li~~l----~~~~~~~~viv~G~--~~~~~~ 245 (380)
T PRK13609 172 VVETGIPIRSSFELKINPDIIYNKYQLCPNKKILLIMAGAHGVLGNVKELCQSL----MSVPDLQVVVVCGK--NEALKQ 245 (380)
T ss_pred EEEECcccChHHcCcCCHHHHHHHcCCCCCCcEEEEEcCCCCCCcCHHHHHHHH----hhCCCcEEEEEeCC--CHHHHH
Confidence 554432110 11111111011122345433 4444333443 35555555544 34588898877542 134677
Q ss_pred HHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecC-CCccCccchhHHHhh
Q 003891 573 RFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA-GSVHAHNVGVSLLTK 651 (788)
Q Consensus 573 ~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~-g~~~~~r~~~~~l~~ 651 (788)
.+++..+..+ ++|+|+|.+. +....|..+|+++. -+||.|++|||++|+|||+.. ... .....+.++..
T Consensus 246 ~l~~~~~~~~---~~v~~~g~~~---~~~~l~~~aD~~v~---~~gg~t~~EA~a~g~PvI~~~~~~g-~~~~n~~~~~~ 315 (380)
T PRK13609 246 SLEDLQETNP---DALKVFGYVE---NIDELFRVTSCMIT---KPGGITLSEAAALGVPVILYKPVPG-QEKENAMYFER 315 (380)
T ss_pred HHHHHHhcCC---CcEEEEechh---hHHHHHHhccEEEe---CCCchHHHHHHHhCCCEEECCCCCC-cchHHHHHHHh
Confidence 7777766655 6899999864 44567778999983 357889999999999999843 111 11222334444
Q ss_pred hCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 652 VGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 652 ~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
.|.. ++..|.+++.+...++.+|++.+++|+++.++.. .-++.+.+++.+++.+.
T Consensus 316 ~G~~-~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~---~~~s~~~i~~~i~~~~~ 370 (380)
T PRK13609 316 KGAA-VVIRDDEEVFAKTEALLQDDMKLLQMKEAMKSLY---LPEPADHIVDDILAENH 370 (380)
T ss_pred CCcE-EEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHhC---CCchHHHHHHHHHHhhh
Confidence 4543 3457999999999999999999999999887542 22578888888877654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.5e-09 Score=110.52 Aligned_cols=232 Identities=15% Similarity=-0.005 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHH
Q 003891 25 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP--MYAEAYCNMGVIY 102 (788)
Q Consensus 25 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p--~~~~~~~~la~~~ 102 (788)
.....+.+++..+|+++..+.-... ..+....+...++..+...++.+.++..++..+.... .+.......|.++
T Consensus 36 e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 36 ERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3455667788888998876655433 2233455666677666555666777776665543322 3455666778888
Q ss_pred HHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-
Q 003891 103 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML- 181 (788)
Q Consensus 103 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g- 181 (788)
...|++++|++.+.+. .+.+..... -.++...++++.|.+.++++.+.+.+..-.....+++....|
T Consensus 113 ~~~~~~~~AL~~l~~~-----~~lE~~al~-------Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG-----GSLELLALA-------VQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGG 180 (290)
T ss_dssp CCCCHHHHHHCCCTTT-----TCHHHHHHH-------HHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHcc-----CcccHHHHH-------HHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCc
Confidence 8899999999888764 233333222 234555779999999999998887776655555666666666
Q ss_pred -ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHH
Q 003891 182 -KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM-DAAAEMIE 259 (788)
Q Consensus 182 -~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~eA~~~l~ 259 (788)
++.+|...|++.....+.++..++.++.++..+|++++|.+.++++++.+|.+++++.+++.+....|+. +.+.+++.
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 6999999999988888889999999999999999999999999999999999999999999999999998 66778888
Q ss_pred HHHHhCCCCHHH
Q 003891 260 KAIAANPTYAEA 271 (788)
Q Consensus 260 kal~~~p~~~~~ 271 (788)
+....+|+++-.
T Consensus 261 qL~~~~p~h~~~ 272 (290)
T PF04733_consen 261 QLKQSNPNHPLV 272 (290)
T ss_dssp HCHHHTTTSHHH
T ss_pred HHHHhCCCChHH
Confidence 888889987643
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK10125 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.8e-09 Score=117.69 Aligned_cols=149 Identities=14% Similarity=0.098 Sum_probs=105.4
Q ss_pred CCCeEEEecCC----CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 003891 524 NGFITFGSFNN----LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 599 (788)
Q Consensus 524 ~~~~~f~~~~~----~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~ 599 (788)
.+..+++++++ ..|..+.+++++.++ .++.+|+++|.+. + .. .+++.+.|...+..+
T Consensus 239 ~~~~~il~v~~~~~~~~Kg~~~li~A~~~l---~~~~~L~ivG~g~---~-~~------------~~~v~~~g~~~~~~~ 299 (405)
T PRK10125 239 QGKPKIAVVAHDLRYDGKTDQQLVREMMAL---GDKIELHTFGKFS---P-FT------------AGNVVNHGFETDKRK 299 (405)
T ss_pred CCCCEEEEEEeccccCCccHHHHHHHHHhC---CCCeEEEEEcCCC---c-cc------------ccceEEecCcCCHHH
Confidence 34445666665 246668888887764 3678999998751 1 10 256888888766788
Q ss_pred HHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccc---------cCCHHHHHHHH
Q 003891 600 HMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI---------AKNEDEYVQLA 669 (788)
Q Consensus 600 ~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i---------a~~~~~y~~~a 669 (788)
....|+.+|+|+-|+-+ +.+++.+|||+||+|||+ +++| |++|+| ..|.+++++
T Consensus 300 l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVa-------t~~g-------G~~Eiv~~~~G~lv~~~d~~~La~-- 363 (405)
T PRK10125 300 LMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIA-------THSD-------AAREVLQKSGGKTVSEEEVLQLAQ-- 363 (405)
T ss_pred HHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEE-------eCCC-------ChHHhEeCCcEEEECCCCHHHHHh--
Confidence 89999999999999977 779999999999999998 7777 555544 235666654
Q ss_pred HHHhcCHHHHHH-HH---HHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 003891 670 LQLASDVTALAN-LR---MSLRDLMSKSPVCDGQNFALGLESTYRNM 712 (788)
Q Consensus 670 ~~l~~d~~~~~~-~r---~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 712 (788)
+.+++.+.+ ++ +..|++.. ..|+.+.+++++++.|+++
T Consensus 364 ---~~~~~~~~~~~~~~~~~~r~~~~--~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 364 ---LSKPEIAQAVFGTTLAEFSQRSR--AAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred ---ccCHHHHHHhhhhHHHHHHHHHH--HhCCHHHHHHHHHHHHHhC
Confidence 245554443 22 33444443 3499999999999999863
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.7e-08 Score=99.01 Aligned_cols=178 Identities=12% Similarity=0.069 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 003891 25 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA---YYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNM 98 (788)
Q Consensus 25 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~---~~~~~~l 98 (788)
..++..|......|++++|++.|++++...|....+ .+.+|.++++.+++++|+..+++.++..|++ +.+++.+
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence 347788999999999999999999999999987554 4999999999999999999999999998875 5688999
Q ss_pred HHHHHHCC---------------C---HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHH
Q 003891 99 GVIYKNRG---------------D---LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 160 (788)
Q Consensus 99 a~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al 160 (788)
|.++...+ + ..+|+..|++.++..|+..-.... ... +..++..+
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A----~~r--------------l~~l~~~l 174 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDA----TKR--------------LVFLKDRL 174 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHH----HHH--------------HHHHHHHH
Confidence 98865443 1 357889999999999987522110 000 01111111
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 161 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQM 226 (788)
Q Consensus 161 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~ 226 (788)
..--+..|..|.+.|.|..|+.-++.+++..|+. .+++..++..|..+|..++|.+....
T Consensus 175 ------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 175 ------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred ------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 1223456777777778888888888877776654 56777777888888888777766544
|
|
| >cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.4e-09 Score=119.77 Aligned_cols=168 Identities=16% Similarity=0.032 Sum_probs=119.3
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 003891 524 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 601 (788)
Q Consensus 524 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~ 601 (788)
++.++++.++|+ .|..+.+++++.++.+. +.+|+++|.| .+...+.+++...+. .++++|.+... .+...
T Consensus 294 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g--~~~~~~~~~~~~~~~---~~~v~~~~~~~-~~~~~ 365 (476)
T cd03791 294 PDAPLFGFVGRLTEQKGIDLLLEALPELLEL--GGQLVILGSG--DPEYEEALRELAARY---PGRVAVLIGYD-EALAH 365 (476)
T ss_pred CCCCEEEEEeeccccccHHHHHHHHHHHHHc--CcEEEEEecC--CHHHHHHHHHHHHhC---CCcEEEEEeCC-HHHHH
Confidence 567788888877 89999999999988864 3899999876 334556666666555 47888776654 45555
Q ss_pred HhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCC------cccc--cCCHHHHHHHHHHH
Q 003891 602 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGL------KHLI--AKNEDEYVQLALQL 672 (788)
Q Consensus 602 ~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl------~~~i--a~~~~~y~~~a~~l 672 (788)
..|+.+|++|-|+.+ +.|.+.+|||++|+|||+.....+..-+. -|- .+++ ..|.+++.+...++
T Consensus 366 ~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~------~~~~~~~~~~G~~~~~~~~~~l~~~i~~~ 439 (476)
T cd03791 366 LIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVI------DYNEDTGEGTGFVFEGYNADALLAALRRA 439 (476)
T ss_pred HHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEe------CCcCCCCCCCeEEeCCCCHHHHHHHHHHH
Confidence 788999999999977 66899999999999999733221111110 011 2333 24678888777766
Q ss_pred h---cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 673 A---SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 673 ~---~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
. .+++.+.+++++..+ ..|+++..++++++.|+
T Consensus 440 l~~~~~~~~~~~~~~~~~~-----~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 440 LALYRDPEAWRKLQRNAMA-----QDFSWDRSAKEYLELYR 475 (476)
T ss_pred HHHHcCHHHHHHHHHHHhc-----cCCChHHHHHHHHHHHh
Confidence 5 467666666665442 24999999999999986
|
Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.7e-08 Score=94.09 Aligned_cols=198 Identities=17% Similarity=0.114 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003891 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 101 (788)
Q Consensus 22 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~ 101 (788)
..|..++..|..|-..|-+.-|..-|.+++.+.|+-+++++.+|..+...|+|+.|.+.|...++++|.+..+..+.|..
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~ 142 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 142 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence 35677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003891 102 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 181 (788)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 181 (788)
++--|++.-|.+-+.+..+.+|+++--.. +.|.. ...-+..+|...+.+-.+...+....+...+ +..|
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ~D~~DPfR~L---WLYl~-----E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~---~yLg 211 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQDDPNDPFRSL---WLYLN-----EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVE---FYLG 211 (297)
T ss_pred eeecCchHhhHHHHHHHHhcCCCChHHHH---HHHHH-----HhhCCHHHHHHHHHHHHHhccHhhhhHHHHH---HHHh
Confidence 99999999999999999999998873221 11211 1133666666554433322222222222211 1222
Q ss_pred ChHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 003891 182 KFDMAIVFYELAFHFNPHC-------AEACNNLGVIYKDRDNLDKAVECYQMALSIK 231 (788)
Q Consensus 182 ~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 231 (788)
+..+ ...++++.....++ .+.++.+|..+...|+.++|...|+-++..+
T Consensus 212 kiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 212 KISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 2211 12223332222221 3566677777777777777777777766543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.9e-08 Score=97.06 Aligned_cols=173 Identities=20% Similarity=0.217 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCN 97 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~---~~~~~~ 97 (788)
+..++..|...+..|++.+|+..|++++...|.. ..+.+.+|.+++..|++++|+..+++.++..|++ ..+++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 3458899999999999999999999999998774 6789999999999999999999999999998885 468888
Q ss_pred HHHHHHHC-----------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCC
Q 003891 98 MGVIYKNR-----------GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY 166 (788)
Q Consensus 98 la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 166 (788)
+|.++..+ +...+|+..|+..++..|++..+. +|...+..+-+ ..
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~---------------------~A~~~l~~l~~---~l 140 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE---------------------EAKKRLAELRN---RL 140 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH---------------------HHHHHHHHHHH---HH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH---------------------HHHHHHHHHHH---HH
Confidence 88887654 334689999999999999975221 11111111000 00
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHH
Q 003891 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKA 220 (788)
Q Consensus 167 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA 220 (788)
..--+.+|..|.+.|.+..|+..++.+++..|+. .+++..++..|.++|..+.|
T Consensus 141 a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 141 AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 1222345566666666666666666666666654 34555666666666665533
|
|
| >PRK13608 diacylglycerol glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-08 Score=112.45 Aligned_cols=176 Identities=13% Similarity=0.122 Sum_probs=121.5
Q ss_pred CCCC-CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCc
Q 003891 521 ALTN-GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 597 (788)
Q Consensus 521 ~~~~-~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~ 597 (788)
+++. ..+++...++. .|....+++.+ ++..|+.++++++++ ....++.+.+.+ +.. ++|.|.|.+.
T Consensus 197 ~l~~~~~~ilv~~G~lg~~k~~~~li~~~---~~~~~~~~~vvv~G~--~~~l~~~l~~~~---~~~-~~v~~~G~~~-- 265 (391)
T PRK13608 197 NLDPDKQTILMSAGAFGVSKGFDTMITDI---LAKSANAQVVMICGK--SKELKRSLTAKF---KSN-ENVLILGYTK-- 265 (391)
T ss_pred CCCCCCCEEEEECCCcccchhHHHHHHHH---HhcCCCceEEEEcCC--CHHHHHHHHHHh---ccC-CCeEEEeccc--
Confidence 4443 34444444554 46666676654 344578888776543 123445555433 333 5899999863
Q ss_pred HHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHH
Q 003891 598 HDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVT 677 (788)
Q Consensus 598 ~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~ 677 (788)
+...+|+.+|+++-. +||.|+.|||++|+|||+..-..-.....+-++...|.. ++..|.+++++...+|.+|++
T Consensus 266 -~~~~~~~~aDl~I~k---~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g-~~~~~~~~l~~~i~~ll~~~~ 340 (391)
T PRK13608 266 -HMNEWMASSQLMITK---PGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFG-KIADTPEEAIKIVASLTNGNE 340 (391)
T ss_pred -hHHHHHHhhhEEEeC---CchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcE-EEeCCHHHHHHHHHHHhcCHH
Confidence 566677889999852 578899999999999999742111234555666777775 446799999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 003891 678 ALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 715 (788)
Q Consensus 678 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 715 (788)
.+++|+++.++.. .-++....++.+++.+..+-+.
T Consensus 341 ~~~~m~~~~~~~~---~~~s~~~i~~~l~~l~~~~~~~ 375 (391)
T PRK13608 341 QLTNMISTMEQDK---IKYATQTICRDLLDLIGHSSQP 375 (391)
T ss_pred HHHHHHHHHHHhc---CCCCHHHHHHHHHHHhhhhhhh
Confidence 9999999998753 2378899999999887765553
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.8e-07 Score=109.20 Aligned_cols=224 Identities=16% Similarity=0.130 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHH
Q 003891 74 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA-VSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 152 (788)
Q Consensus 74 ~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A 152 (788)
-.+..+-|++.+..+|+....|..+...+.+.++.++|.+..++|+. +++...+-..++..+|.++-..| |.-+.-
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl 1516 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESL 1516 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHH
Confidence 34456778888999999999999999999999999999999999997 45655555666666666665444 466677
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003891 153 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 232 (788)
Q Consensus 153 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 232 (788)
.+.|++|.+.. +-..++..|..+|...+++++|.++|+..++...+....|..++..++++++-++|...+++|++.-|
T Consensus 1517 ~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1517 KKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred HHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence 78888888765 33457888999999999999999999999999888899999999999999999999999999999988
Q ss_pred C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 233 N--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 233 ~--~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
. +.+.....|.+-++.|+.+.+...|+..+..+|...+.|.-+...-.+.|+.+.+...|++++.+.=.
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 7 67788899999999999999999999999999999999999999999999999999999999877443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-06 Score=95.05 Aligned_cols=303 Identities=18% Similarity=0.166 Sum_probs=220.1
Q ss_pred HHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 9 ALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-DPH-----YAPAYYNLGVVYSELMQYDTALGCYE 82 (788)
Q Consensus 9 aL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~-~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~ 82 (788)
+|+.+|.+.+-|.... -...|+..+-+..|.++++. +|. -...|..+|..|...|+.+.|...|+
T Consensus 341 lLRQn~~nV~eW~kRV---------~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKRV---------KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred HHhcCCccHHHHHhhh---------hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 4567777777654433 34568899999999999875 554 35689999999999999999999999
Q ss_pred HHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHH---------H---HHHHHHHHHHhhhhhhhc
Q 003891 83 KAALERPM----YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI---------A---KNNMAIALTDLGTKVKLE 146 (788)
Q Consensus 83 kal~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~---~~~la~~l~~lg~~~~~~ 146 (788)
++.+..-. .+.+|..-|..-....+++.|+++.++|... |..+. + ...-..++...+......
T Consensus 412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 99986533 3678999999999999999999999998765 22211 1 112234455556666677
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CCHHHHHHHHHH---HHHcCCHHHHH
Q 003891 147 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP--HCAEACNNLGVI---YKDRDNLDKAV 221 (788)
Q Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~---~~~~g~~~eA~ 221 (788)
|-++.....|++.+.+.--.+....+.|..+....-++++.+.|++.+.+.+ .-.++|+..-.- -+..-+.+.|.
T Consensus 491 gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 8999999999999999888999999999999999999999999999999854 445555543322 33345789999
Q ss_pred HHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HcCCHHHHHHHHHH
Q 003891 222 ECYQMALSIKPNFS--QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR-----DAGSISLAIDAYEQ 294 (788)
Q Consensus 222 ~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~-----~~g~~~eA~~~~~~ 294 (788)
.+|++|++..|... .++...+..-.+-|-...|++.|+++-..-+.. -.+.+-.+|. ..| ...-...|++
T Consensus 571 dLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a--~~l~myni~I~kaae~yG-v~~TR~iYek 647 (835)
T KOG2047|consen 571 DLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEA--QRLDMYNIYIKKAAEIYG-VPRTREIYEK 647 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHHHHhC-CcccHHHHHH
Confidence 99999999988432 256667777778899999999999986653321 1222222222 222 3345788999
Q ss_pred HHhhCCCChhhHHhHHHHhhhccCCCchHH
Q 003891 295 CLKIDPDSRNAGQNRLLAMNYINEGHDDKL 324 (788)
Q Consensus 295 al~l~p~~~~a~~~~lla~~~l~~g~~~~~ 324 (788)
|++.-|+...-...+-++..-...|+-+.+
T Consensus 648 aIe~Lp~~~~r~mclrFAdlEtklGEidRA 677 (835)
T KOG2047|consen 648 AIESLPDSKAREMCLRFADLETKLGEIDRA 677 (835)
T ss_pred HHHhCChHHHHHHHHHHHHHhhhhhhHHHH
Confidence 999988876554444444443344544443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.7e-08 Score=96.82 Aligned_cols=299 Identities=17% Similarity=0.181 Sum_probs=214.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC--CCHHHHHH
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYEKAALE----RP--MYAEAYCN 97 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~~----~p--~~~~~~~~ 97 (788)
....|..++...++++|+..+.+.+..-.+. ...+-.+..+...+|.|++++.+--..+.. +. ...+++.+
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ln 88 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLN 88 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566788889999999999999988765443 234445567778888888887765544432 11 13568899
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCH------HHHH
Q 003891 98 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA------DAMY 171 (788)
Q Consensus 98 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~ 171 (788)
++..+....++.+++.+-+..+.+-...+. ..-+.....++..+.-.+.++++++.|++++++..++. .++.
T Consensus 89 lar~~e~l~~f~kt~~y~k~~l~lpgt~~~--~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv 166 (518)
T KOG1941|consen 89 LARSNEKLCEFHKTISYCKTCLGLPGTRAG--QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCV 166 (518)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCCCCcc--cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhh
Confidence 999999999999999999888876433221 00123344456666667799999999999998865443 3678
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCC----C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCH
Q 003891 172 NLGVAYGEMLKFDMAIVFYELAFHFNPH----C------AEACNNLGVIYKDRDNLDKAVECYQMALSIK------PNFS 235 (788)
Q Consensus 172 ~la~~~~~~g~~~~A~~~~~~al~~~p~----~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------p~~~ 235 (788)
.+|.++....++++|..+..++.++... + ..+++.++..+..+|+..+|.++.+++.++. +-..
T Consensus 167 ~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~a 246 (518)
T KOG1941|consen 167 SLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQA 246 (518)
T ss_pred hHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHH
Confidence 8999999999999999999999886322 1 3467888999999999999999999998763 2234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHH-----HHHHHHHHHhhCCC---
Q 003891 236 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------YAEAYNNLGVLYRDAGSISL-----AIDAYEQCLKIDPD--- 301 (788)
Q Consensus 236 ~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~------~~~~~~~la~~~~~~g~~~e-----A~~~~~~al~l~p~--- 301 (788)
.....+|.+|...|+.+.|..-|++|...... ..++....++++....-..+ |++.-++++++...
T Consensus 247 rc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~ 326 (518)
T KOG1941|consen 247 RCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGA 326 (518)
T ss_pred HHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhh
Confidence 56778999999999999999999999876322 13456666666655443333 88888888776443
Q ss_pred -ChhhHHhHHHHhhhccCCCchHHHHH
Q 003891 302 -SRNAGQNRLLAMNYINEGHDDKLFEA 327 (788)
Q Consensus 302 -~~~a~~~~lla~~~l~~g~~~~~~~~ 327 (788)
.........++..|-..|..++.-+.
T Consensus 327 K~~vlK~hcrla~iYrs~gl~d~~~~h 353 (518)
T KOG1941|consen 327 KLSVLKLHCRLASIYRSKGLQDELRAH 353 (518)
T ss_pred hHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 22223334566777666665554433
|
|
| >cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.7e-09 Score=116.16 Aligned_cols=172 Identities=16% Similarity=0.076 Sum_probs=120.6
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCC-CCHHHHHHHHHHHH----HcCCC-----CCc
Q 003891 524 NGFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPF-CCDSVRHRFLSTLE----QLGLE-----SLR 587 (788)
Q Consensus 524 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~l~~~~~-~~~~~~~~l~~~~~----~~gi~-----~~r 587 (788)
.+..++++++|+ .|..+..++++.++++..|+ .+|+++|.+. ++.+....+++.++ +.+.. -..
T Consensus 262 ~~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~ 341 (460)
T cd03788 262 GGRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTP 341 (460)
T ss_pred CCCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCcee
Confidence 455678888887 89999999999999999997 5688876543 22233333433333 32221 123
Q ss_pred EEEc-CCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCc----eeecCCCccCccchhHHHhhhCCccccc--
Q 003891 588 VDLL-PLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP----CVTMAGSVHAHNVGVSLLTKVGLKHLIA-- 659 (788)
Q Consensus 588 v~~~-~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvP----vvt~~g~~~~~r~~~~~l~~~gl~~~ia-- 659 (788)
|++. +.++ .++...+|+.+|||+-|+.. +-+.+++|||++|+| ||+ ++.+++.-. |...++.
T Consensus 342 v~~~~g~v~-~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~-------S~~~G~~~~--~~~g~lv~p 411 (460)
T cd03788 342 VRYLYRSLP-REELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLIL-------SEFAGAAEE--LSGALLVNP 411 (460)
T ss_pred EEEEeCCCC-HHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEE-------eccccchhh--cCCCEEECC
Confidence 5554 5555 78999999999999999987 559999999999999 654 443321111 3344543
Q ss_pred CCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 003891 660 KNEDEYVQLALQLASDV-TALANLRMSLRDLMSKSPVCDGQNFALGLEST 708 (788)
Q Consensus 660 ~~~~~y~~~a~~l~~d~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~ 708 (788)
.|.+++++...++.+++ +.++.+.++.++.+. -||...++.++...
T Consensus 412 ~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~---~~~~~~w~~~~l~~ 458 (460)
T cd03788 412 YDIDEVADAIHRALTMPLEERRERHRKLREYVR---THDVQAWANSFLDD 458 (460)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHh
Confidence 58999999999988855 677777777777764 37999998887643
|
It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.1e-06 Score=85.98 Aligned_cols=223 Identities=30% Similarity=0.406 Sum_probs=129.9
Q ss_pred CCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhhhhhhhcC
Q 003891 72 MQYDTALGCYEKAALERPM--YAEAYCNMGVIYKNRGDLESAIACYERCLA--VSPNFEIAKNNMAIALTDLGTKVKLEG 147 (788)
Q Consensus 72 g~~~~A~~~~~kal~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~l~~lg~~~~~~g 147 (788)
+.+..+...+...+...+. ........+..+...+++..+...+...+. ..+... ..+...+..+...+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 109 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLA-------EALLNLGLLLEALG 109 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchH-------HHHHHHHHHHHHHh
Confidence 3444444444444444443 244555555555555555555555555554 222222 22222333333334
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHH
Q 003891 148 DINQGVAYYKKALYYNWHYADAMYNLGV-AYGEMLKFDMAIVFYELAFHFNP---HCAEACNNLGVIYKDRDNLDKAVEC 223 (788)
Q Consensus 148 ~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~eA~~~ 223 (788)
++.++++.+.+++...+.........+. ++...|++++|...+++++...| .........+..+...+++++|+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 189 (291)
T COG0457 110 KYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALEL 189 (291)
T ss_pred hHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHH
Confidence 4555555555555554444333333333 56666666666666666665544 2344555555556666777777777
Q ss_pred HHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 224 YQMALSIKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 224 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
+.+++...+. ....+..++..+...+++++|+..+.+++...|.....+..++..+...++++++...+.++++..|.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 190 LEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 7777777666 56677777777777777777777777777777766666666666666666677777777777777776
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.6e-08 Score=91.08 Aligned_cols=105 Identities=24% Similarity=0.303 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 003891 202 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNL 275 (788)
Q Consensus 202 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~---~~~~~~l 275 (788)
..++.+|..+...|++++|++.|+++++.+|++ ..+++.+|.++...|++++|+.++++++...|++ +.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456777777777888888888888887777665 4577778888888888888888888888777664 5677888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChhhH
Q 003891 276 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 276 a~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
|.++.++|++++|..+++++++..|++..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 8888888888888888888888888766543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-07 Score=96.90 Aligned_cols=189 Identities=12% Similarity=0.029 Sum_probs=141.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHH---H
Q 003891 56 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA---YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA---K 129 (788)
Q Consensus 56 ~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~ 129 (788)
..+..++..|..++..|+|++|+..|++++...|....+ .+.+|.+|.+.+++++|+..+++.++..|+++.. .
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 467788999999999999999999999999999987654 4899999999999999999999999999988643 3
Q ss_pred HHHHHHHHHhhhh-----------hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 003891 130 NNMAIALTDLGTK-----------VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 198 (788)
Q Consensus 130 ~~la~~l~~lg~~-----------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 198 (788)
+.++.++..++.. ...+....+|+..|++.++..|+...+- +|...+..+ ..
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~--------------~A~~rl~~l---~~ 172 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT--------------DATKRLVFL---KD 172 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH--------------HHHHHHHHH---HH
Confidence 3333333222211 0111224578889999999999875321 111111111 00
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 199 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKA 261 (788)
Q Consensus 199 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~ka 261 (788)
.-..--+.+|..|.+.|.|..|+.-++.+++..|+. .+++..++..|...|..++|.+.....
T Consensus 173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 112334578899999999999999999999998876 568999999999999999998877654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-06 Score=87.40 Aligned_cols=225 Identities=30% Similarity=0.460 Sum_probs=195.7
Q ss_pred cCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHH
Q 003891 37 AGNTQDGIQKYYEALKIDPH--YAPAYYNLGVVYSELMQYDTALGCYEKAAL--ERPMYAEAYCNMGVIYKNRGDLESAI 112 (788)
Q Consensus 37 ~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--~~p~~~~~~~~la~~~~~~g~~~~A~ 112 (788)
.+.+..+...+...+...+. ........+..+...+++..+...+..... ..+.....+...+..+...+++.+++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 46778888888888888876 478889999999999999999999999997 68888999999999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCChHHHHHH
Q 003891 113 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW---HYADAMYNLGVAYGEMLKFDMAIVF 189 (788)
Q Consensus 113 ~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~ 189 (788)
+.+.+++...+........... + ++...+++++|...+.+++...+ .........+..+...+++++|+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 189 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLAL-----G-ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALEL 189 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHH-----H-HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHH
Confidence 9999999988776322222222 1 56667899999999999988776 3556677777778899999999999
Q ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003891 190 YELAFHFNPH-CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 267 (788)
Q Consensus 190 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 267 (788)
+.+++...+. ....+..++..+...+++++|+..+.+++...|.....+..++..+...++++++...+.+++...|.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 190 LEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999999 79999999999999999999999999999999997788888888888888899999999999999987
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.96 E-value=2e-08 Score=96.88 Aligned_cols=122 Identities=22% Similarity=0.223 Sum_probs=101.4
Q ss_pred cCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHH
Q 003891 37 AGNTQDGIQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNMGVIYKNRGDLESA 111 (788)
Q Consensus 37 ~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~---~~~~~~~la~~~~~~g~~~~A 111 (788)
.+.+..+...+...++.++.. ...++.+|.++..+|++++|+..|++++.+.|+ .+.++.++|.++...|++++|
T Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA 91 (168)
T CHL00033 12 DKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKA 91 (168)
T ss_pred ccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHH
Confidence 345666777776665555554 677899999999999999999999999988765 346899999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHH
Q 003891 112 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 158 (788)
Q Consensus 112 ~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~ 158 (788)
+.++++++++.|.....+.+++.++..+|..+...|++++|+..+++
T Consensus 92 ~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 92 LEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 99999999999999999999999999888888888887755544443
|
|
| >TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.4e-08 Score=110.12 Aligned_cols=173 Identities=17% Similarity=0.127 Sum_probs=122.6
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCC-CCHHHHHHHHHHHHHc--------CC-CCCcE
Q 003891 525 GFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPF-CCDSVRHRFLSTLEQL--------GL-ESLRV 588 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~l~~~~~-~~~~~~~~l~~~~~~~--------gi-~~~rv 588 (788)
+..+++++.|+ .|..+..++++.++++..|+ .+|++++.+. .+.+....+++.+++. |- +-.-+
T Consensus 258 ~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv 337 (456)
T TIGR02400 258 GRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPI 337 (456)
T ss_pred CCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccE
Confidence 45678898987 89999999999999999997 4577776443 2224455566666554 21 10114
Q ss_pred EEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCc----eeecCCCccCccchhHHHhhhCCcccc--cCC
Q 003891 589 DLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP----CVTMAGSVHAHNVGVSLLTKVGLKHLI--AKN 661 (788)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvP----vvt~~g~~~~~r~~~~~l~~~gl~~~i--a~~ 661 (788)
++++...+.++..+.|+.+||||-|+-+ +-+.+++|||+||+| ||. |+.+++ ...++ ..++ ..|
T Consensus 338 ~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVl-------S~~~G~-~~~l~-~gllVnP~d 408 (456)
T TIGR02400 338 RYLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLIL-------SEFAGA-AQELN-GALLVNPYD 408 (456)
T ss_pred EEEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEE-------eCCCCC-hHHhC-CcEEECCCC
Confidence 4544333378999999999999999988 559999999999999 665 444321 11122 3333 368
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 003891 662 EDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 709 (788)
Q Consensus 662 ~~~y~~~a~~l~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 709 (788)
.++..+...++.+ +++.++++.+++++++.+ +|...+++.+.+.+
T Consensus 409 ~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~---~~~~~W~~~~l~~l 454 (456)
T TIGR02400 409 IDGMADAIARALTMPLEEREERHRAMMDKLRK---NDVQRWREDFLSDL 454 (456)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHh
Confidence 8999888888776 667888888888888654 79999998877654
|
This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-07 Score=94.26 Aligned_cols=183 Identities=20% Similarity=0.190 Sum_probs=131.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHH---HHH
Q 003891 57 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI---AKN 130 (788)
Q Consensus 57 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 130 (788)
.+..++..|..++..|+|.+|+..|++++...|.. ..+.+.+|.++...|++++|+..+++.++..|+++. +.+
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46788999999999999999999999999988764 678999999999999999999999999999998763 444
Q ss_pred HHHHHHHHhhhh----hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH
Q 003891 131 NMAIALTDLGTK----VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 206 (788)
Q Consensus 131 ~la~~l~~lg~~----~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 206 (788)
.++.++..+..- ....+...+|+..|+..++..|++..+- +|...+..+-. ....--+.
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~---~la~~e~~ 146 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRN---RLAEHELY 146 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHH---HHHHHHHH
Confidence 455554444322 3344556788888888888888765321 11111111100 01234456
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHH
Q 003891 207 LGVIYKDRDNLDKAVECYQMALSIKPNFS---QSLNNLGVVYTVQGKMDAAAE 256 (788)
Q Consensus 207 la~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~ 256 (788)
+|..|.+.|.+..|+..++.+++..|+.. +++..++.+|.++|..+.|..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 89999999999999999999999999885 478899999999999985543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=7e-08 Score=93.43 Aligned_cols=87 Identities=30% Similarity=0.465 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 102 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~ 102 (788)
.++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..++++++..|.+...+..+|.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34444444445555555555555554443321 234444455555555555555555555544444444444444444
Q ss_pred HHCCCHHHHH
Q 003891 103 KNRGDLESAI 112 (788)
Q Consensus 103 ~~~g~~~~A~ 112 (788)
...|+...+.
T Consensus 117 ~~~g~~~~a~ 126 (172)
T PRK02603 117 HKRGEKAEEA 126 (172)
T ss_pred HHcCChHhHh
Confidence 4444444333
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.91 E-value=3e-08 Score=89.29 Aligned_cols=103 Identities=24% Similarity=0.281 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 003891 25 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNM 98 (788)
Q Consensus 25 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~---~~~~~~l 98 (788)
.+++.+|..+...|++++|++.|.++++.+|++ ..+++.+|.++...|++++|+..|++++...|++ ..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 357889999999999999999999999998876 5789999999999999999999999999998875 6789999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCcHH
Q 003891 99 GVIYKNRGDLESAIACYERCLAVSPNFEI 127 (788)
Q Consensus 99 a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 127 (788)
|.++...|++++|+.+++++++..|++..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 99999999999999999999999999764
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.9e-08 Score=85.56 Aligned_cols=98 Identities=39% Similarity=0.622 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003891 203 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 282 (788)
Q Consensus 203 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~ 282 (788)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|++.+++++...|.+..++..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHhhCC
Q 003891 283 GSISLAIDAYEQCLKIDP 300 (788)
Q Consensus 283 g~~~eA~~~~~~al~l~p 300 (788)
|++++|...++++++..|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 777778777777777665
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.8e-07 Score=98.20 Aligned_cols=141 Identities=24% Similarity=0.350 Sum_probs=78.2
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHCCCHHHHH
Q 003891 39 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP--M----YAEAYCNMGVIYKNRGDLESAI 112 (788)
Q Consensus 39 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p--~----~~~~~~~la~~~~~~g~~~~A~ 112 (788)
++++|...|.++ |.+|...+++++|.++|.++....- + -...+...+.+|.+. ++++|+
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 555665555554 4555566666666666666644311 1 134555666776666 888999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHH
Q 003891 113 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE-GDINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDM 185 (788)
Q Consensus 113 ~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~ 185 (788)
.+|++++++.-... .....+.++..+|.+|... +++++|+++|+++++..... ...+..+|.++...|+|++
T Consensus 95 ~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~ 173 (282)
T PF14938_consen 95 ECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEE 173 (282)
T ss_dssp HHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHH
Confidence 99999887643222 1223356667777777776 77777777777776542111 1233444455555555555
Q ss_pred HHHHHHHHHh
Q 003891 186 AIVFYELAFH 195 (788)
Q Consensus 186 A~~~~~~al~ 195 (788)
|++.|++...
T Consensus 174 A~~~~e~~~~ 183 (282)
T PF14938_consen 174 AIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
|
|
| >PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.4e-08 Score=109.21 Aligned_cols=260 Identities=17% Similarity=0.149 Sum_probs=147.6
Q ss_pred HHHHHHHhCCCcEEEeCCCCCCCCcccccccCCCCeEEecccCCCCCC------CCCccEEEecCCCCCcCccCCCccce
Q 003891 424 KVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG------LPTIDYRITDSLADPPETKQKHVEEL 497 (788)
Q Consensus 424 ~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~Apvq~~~~g~~~ttg------~~~~Dy~i~d~~~~p~~~~~~~~e~l 497 (788)
.+.+.|++.++||++--+.++ +-...++.|-..+-+.+..+..-.+ ....|.+++.. |.........++
T Consensus 82 ~~~~~ik~~~pDvv~~~~~~~--~~~~~~~~~~~~~p~v~~~~~~~~~~~~r~~~~~~d~ii~~~---~~~~~~~~~~~i 156 (357)
T PRK00726 82 QARKILKRFKPDVVVGFGGYV--SGPGGLAARLLGIPLVIHEQNAVPGLANKLLARFAKKVATAF---PGAFPEFFKPKA 156 (357)
T ss_pred HHHHHHHhcCCCEEEECCCcc--hhHHHHHHHHcCCCEEEEcCCCCccHHHHHHHHHhchheECc---hhhhhccCCCCE
Confidence 466778899999998655443 2223333333333222222211111 12334444321 111001223456
Q ss_pred EEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHH-HHHHHHHhHcCCcEEEEecCCCCCHHHHHHH
Q 003891 498 IRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVL-QVWARILCAVPNSRLVVKCKPFCCDSVRHRF 574 (788)
Q Consensus 498 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~-~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l 574 (788)
..+|+..-. ... .........+++.+..+++.+++. .|....++ +++.++... | -++++.|.+ . .+.+
T Consensus 157 ~vi~n~v~~-~~~-~~~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~-~-~~~~~~G~g----~-~~~~ 227 (357)
T PRK00726 157 VVTGNPVRE-EIL-ALAAPPARLAGREGKPTLLVVGGSQGARVLNEAVPEALALLPEA-L-QVIHQTGKG----D-LEEV 227 (357)
T ss_pred EEECCCCCh-Hhh-cccchhhhccCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhhC-c-EEEEEcCCC----c-HHHH
Confidence 666653211 000 000111122344455556666654 34333444 776666543 4 456667766 2 2455
Q ss_pred HHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccC---ccchhHHHhh
Q 003891 575 LSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHA---HNVGVSLLTK 651 (788)
Q Consensus 575 ~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~---~r~~~~~l~~ 651 (788)
.+..+ .|+. |.|.+.+ +++...+..+|+++-+ +|+.|++|||++|+|||+.+..... ....+.++..
T Consensus 228 ~~~~~-~~~~---v~~~g~~---~~~~~~~~~~d~~i~~---~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~ 297 (357)
T PRK00726 228 RAAYA-AGIN---AEVVPFI---DDMAAAYAAADLVICR---AGASTVAELAAAGLPAILVPLPHAADDHQTANARALVD 297 (357)
T ss_pred HHHhh-cCCc---EEEeehH---hhHHHHHHhCCEEEEC---CCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHH
Confidence 55555 7774 8898885 4667778889999953 3678999999999999997642111 1122445666
Q ss_pred hCCccccc-CC--HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 652 VGLKHLIA-KN--EDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 652 ~gl~~~ia-~~--~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
.|..-++. .| ++++.+...++.+|++.++.|++..++.. .-++..+.++.+++..+
T Consensus 298 ~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 298 AGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALG---KPDAAERLADLIEELAR 356 (357)
T ss_pred CCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcC---CcCHHHHHHHHHHHHhh
Confidence 67654443 34 89999999999999999999999987653 33577777777766543
|
|
| >PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.8e-09 Score=98.71 Aligned_cols=129 Identities=13% Similarity=0.203 Sum_probs=87.3
Q ss_pred CeEEEecCCC--CcCCHHHHH-HHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 003891 526 FITFGSFNNL--AKITPKVLQ-VWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 602 (788)
Q Consensus 526 ~~~f~~~~~~--~K~~~~~~~-~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 602 (788)
.++||.+++. .|....+++ +|.++.++.|+.+|.+.|.+. + ++++. ..++|.|.|.+ +++..
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~---~---~l~~~------~~~~v~~~g~~---~e~~~ 66 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGP---D---ELKRL------RRPNVRFHGFV---EELPE 66 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS-------HHCCH------HHCTEEEE-S----HHHHH
T ss_pred cccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCH---H---HHHHh------cCCCEEEcCCH---HHHHH
Confidence 4678888877 488888999 999999999999999998742 1 23332 23699999997 47899
Q ss_pred hcccccEeecCCCC--CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcC
Q 003891 603 AYSLMDISLDTFPY--AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASD 675 (788)
Q Consensus 603 ~~~~~Dv~Ld~~~~--~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d 675 (788)
.++.|||++.|+.. +.+++++|+|++|+|||+... . ...+....|..-++..|.+++++...+|.+|
T Consensus 67 ~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-~-----~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 67 ILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-G-----AEGIVEEDGCGVLVANDPEELAEAIERLLND 135 (135)
T ss_dssp HHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-H-----CHCHS---SEEEE-TT-HHHHHHHHHHHHH-
T ss_pred HHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-c-----hhhheeecCCeEEECCCHHHHHHHHHHHhcC
Confidence 99999999999864 346799999999999998443 1 1223333455567788999999999999876
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.7e-08 Score=96.84 Aligned_cols=268 Identities=16% Similarity=0.153 Sum_probs=201.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHH
Q 003891 30 LGTSLKLAGNTQDGIQKYYEALKI----DPH--YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNM 98 (788)
Q Consensus 30 lg~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~-----~~~~~~l 98 (788)
+..+....|.|++++..--..+.. +.. ..+++.+++..+...-++.+++.+-+-.+.+.... ..+...+
T Consensus 49 l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~ 128 (518)
T KOG1941|consen 49 LVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSM 128 (518)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhH
Confidence 445666778888777665444333 211 25688999999999999999999888777653322 3677789
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCC----C------HH
Q 003891 99 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH----Y------AD 168 (788)
Q Consensus 99 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~------~~ 168 (788)
+..+..++.++++++.|+++++...++.+.... -.++..+|..+....++++|.-+..++.++... + ..
T Consensus 129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE-lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLE-LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhccCCceee-eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 999999999999999999999986655444333 356677888888889999999999999887432 2 23
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHH
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN------FSQ 236 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~------~~~ 236 (788)
+++.++..+..+|+.-.|.++.+++.++. +-.......+|.+|...|+.+.|..-|+++...... ..+
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~ 287 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVE 287 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 57788999999999999999999998762 224567788999999999999999999999876322 134
Q ss_pred HHHHHHHHHHHcCCHHH-----HHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 237 SLNNLGVVYTVQGKMDA-----AAEMIEKAIAANPTY------AEAYNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 237 ~~~~la~~~~~~g~~~e-----A~~~l~kal~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
++...+.++....-..+ |++.-++++++.... ...+..++.+|..+|.-++=.+.+.++-+.
T Consensus 288 al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 288 ALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 56666777665544444 888888888764332 357888999999999888877777776554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.9e-08 Score=98.46 Aligned_cols=124 Identities=22% Similarity=0.252 Sum_probs=110.2
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHH
Q 003891 182 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG---KMDAAAEMI 258 (788)
Q Consensus 182 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~l 258 (788)
+.++.+.-++.-+..+|++.+-|..||.+|..+|++..|...|.+++++.|++++.+..+|.+++.+. ...++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 35666777788888899999999999999999999999999999999999999999999999887654 467899999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhh
Q 003891 259 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 305 (788)
Q Consensus 259 ~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a 305 (788)
++++..+|++..+.+.||..++..|+|.+|...++..++..|.+..-
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 99999999999999999999999999999999999999998876543
|
|
| >TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.4e-08 Score=106.13 Aligned_cols=302 Identities=14% Similarity=0.116 Sum_probs=167.1
Q ss_pred ccChhHHhhhhhhcccCC-CceEEEEEeccccCChhhHHHHHHHhhhCCeEEEccC--CC--------HHHHHHHHHhCC
Q 003891 365 FTHSVSYFIEAPLVYHDY-QNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG--ID--------EKKVAAMVREDK 433 (788)
Q Consensus 365 ~~H~v~~~~~~~l~~~dr-~~fev~~Y~~~~~~D~~t~~~r~~~~~~~~~~~~~~~--~~--------~~~~a~~i~~d~ 433 (788)
.+.|---++.+++....+ ..|++.+..++..-+ ....+.....-..+....+.+ -+ -.++++.+++.+
T Consensus 8 gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 86 (365)
T TIGR00236 8 GTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHRE-MLDQVLDLFHLPPDYDLNIMSPGQTLGEITSNMLEGLEELLLEEK 86 (365)
T ss_pred ecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHH-HHHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 344545567777776664 478888888877643 333333222111122223322 22 145788899999
Q ss_pred CcEEEeCCCCCCCCcccccccC--CCCeEEecccCCCCCCCC--CccE-------EEecCCCCCcCcc-------CCCcc
Q 003891 434 IDILVELTGHTANNKLGMMACQ--PAPVQVTWIGYPNTTGLP--TIDY-------RITDSLADPPETK-------QKHVE 495 (788)
Q Consensus 434 idilvdl~g~t~~~~~~~~a~r--~Apvq~~~~g~~~ttg~~--~~Dy-------~i~d~~~~p~~~~-------~~~~e 495 (788)
+||++=. |.+.....+..+.+ -.|+ +..-|...|.+.. .-|- .++|.++.|.+.. ..-.|
T Consensus 87 pDiv~~~-gd~~~~la~a~aa~~~~ipv-~h~~~g~~s~~~~~~~~~~~~r~~~~~~ad~~~~~s~~~~~~l~~~G~~~~ 164 (365)
T TIGR00236 87 PDIVLVQ-GDTTTTLAGALAAFYLQIPV-GHVEAGLRTGDRYSPMPEEINRQLTGHIADLHFAPTEQAKDNLLRENVKAD 164 (365)
T ss_pred CCEEEEe-CCchHHHHHHHHHHHhCCCE-EEEeCCCCcCCCCCCCccHHHHHHHHHHHHhccCCCHHHHHHHHHcCCCcc
Confidence 9999543 11111111122222 2354 2221222222211 0011 1345555554321 11234
Q ss_pred ceEEcCCCccc--cCCCC-C-CCCCCCCCCCCCCCeEEEecCCC---CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCH
Q 003891 496 ELIRLPECFLC--YTPSP-E-AGPVCPTPALTNGFITFGSFNNL---AKITPKVLQVWARILCAVPNSRLVVKCKPFCCD 568 (788)
Q Consensus 496 ~l~~lp~~~~~--~~~~~-~-~~~~~~~~~~~~~~~~f~~~~~~---~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~ 568 (788)
++..+++..+. +.+.. . ........+ .++.+++++.++. .|..+.+++++.++.+..|+.++++.+.+. .
T Consensus 165 ~I~vign~~~d~~~~~~~~~~~~~~~~~~~-~~~~~vl~~~hr~~~~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~--~ 241 (365)
T TIGR00236 165 SIFVTGNTVIDALLTNVEIAYSSPVLSEFG-EDKRYILLTLHRRENVGEPLENIFKAIREIVEEFEDVQIVYPVHLN--P 241 (365)
T ss_pred cEEEeCChHHHHHHHHHhhccchhHHHhcC-CCCCEEEEecCchhhhhhHHHHHHHHHHHHHHHCCCCEEEEECCCC--h
Confidence 56666654322 11110 0 111111122 2345566666543 467789999999998888999988875442 2
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHH
Q 003891 569 SVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSL 648 (788)
Q Consensus 569 ~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~ 648 (788)
..+..+. +..|.. ++|.|++.++ ..+++..+..+|+++-++ | +.++||+++|+|||+..... +|. -
T Consensus 242 ~~~~~~~---~~~~~~-~~v~~~~~~~-~~~~~~~l~~ad~vv~~S---g-~~~~EA~a~g~PvI~~~~~~--~~~---e 307 (365)
T TIGR00236 242 VVREPLH---KHLGDS-KRVHLIEPLE-YLDFLNLAANSHLILTDS---G-GVQEEAPSLGKPVLVLRDTT--ERP---E 307 (365)
T ss_pred HHHHHHH---HHhCCC-CCEEEECCCC-hHHHHHHHHhCCEEEECC---h-hHHHHHHHcCCCEEECCCCC--CCh---H
Confidence 3333333 234654 7899999876 678999999999998543 3 34799999999999963110 111 1
Q ss_pred HhhhCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 003891 649 LTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSL 686 (788)
Q Consensus 649 l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~ 686 (788)
+...|..-++..|+++..+...++.+|++.+++++...
T Consensus 308 ~~~~g~~~lv~~d~~~i~~ai~~ll~~~~~~~~~~~~~ 345 (365)
T TIGR00236 308 TVEAGTNKLVGTDKENITKAAKRLLTDPDEYKKMSNAS 345 (365)
T ss_pred HHhcCceEEeCCCHHHHHHHHHHHHhChHHHHHhhhcC
Confidence 11235444566799999999999999998877776543
|
Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.2e-09 Score=82.92 Aligned_cols=67 Identities=43% Similarity=0.691 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 003891 234 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG-SISLAIDAYEQCLKIDP 300 (788)
Q Consensus 234 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~l~p 300 (788)
++..+..+|.++...|++++|+.+|+++++.+|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45667777777777777777777777777777777777777777777777 57777777777777766
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.9e-08 Score=93.60 Aligned_cols=103 Identities=22% Similarity=0.341 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003891 203 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 279 (788)
Q Consensus 203 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~ 279 (788)
.++.+|.++...|++++|+..|++++.+.++. +.++.++|.++...|++++|+..+++++.+.|.....+.++|.++
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~ 116 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 34444444444444444444444444443321 224444555555555555555555555555444444444444444
Q ss_pred H-------HcCCHH-------HHHHHHHHHHhhCCCChhh
Q 003891 280 R-------DAGSIS-------LAIDAYEQCLKIDPDSRNA 305 (788)
Q Consensus 280 ~-------~~g~~~-------eA~~~~~~al~l~p~~~~a 305 (788)
. .+|+++ +|+.+|++++..+|++...
T Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~ 156 (168)
T CHL00033 117 HYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIE 156 (168)
T ss_pred HHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHH
Confidence 4 444443 5666677777777765433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.8e-06 Score=83.48 Aligned_cols=260 Identities=20% Similarity=0.135 Sum_probs=139.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Q 003891 30 LGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 108 (788)
Q Consensus 30 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~ 108 (788)
-++.....|+++.|.+.|+.++. +|+ ..-.+..|-.-....|..+.|..+.+++-...|..+.++...-...+..|++
T Consensus 126 eAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdW 204 (531)
T COG3898 126 EAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDW 204 (531)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCCh
Confidence 34555667899999888888764 333 1222223333334678888999999998888888888888887888888999
Q ss_pred HHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 003891 109 ESAIACYERCLAVSPNFE-IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 187 (788)
Q Consensus 109 ~~A~~~~~~al~~~p~~~-~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 187 (788)
+.|+++.+...+..--.. .+....+..+..-+. .....+...|...-.++.++.|+...+-..-+..+++.|+..++-
T Consensus 205 d~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~-s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~ 283 (531)
T COG3898 205 DGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM-SLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGS 283 (531)
T ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH-HHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhh
Confidence 999888876554321111 011111111111111 111234555556666666666666555555566666666666666
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003891 188 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA---LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 264 (788)
Q Consensus 188 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a---l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~ 264 (788)
.+++.+.+..|.- . ++.+|....--+.++.-++++ ..+.|++.+.....+..-+.-|++..|..--+.+...
T Consensus 284 ~ilE~aWK~ePHP-~----ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 284 KILETAWKAEPHP-D----IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred hHHHHHHhcCCCh-H----HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 6666665555531 1 122222222222222222222 2334555555555555555555555555555555555
Q ss_pred CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Q 003891 265 NPTYAEAYNNLGVLYRDA-GSISLAIDAYEQCLK 297 (788)
Q Consensus 265 ~p~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~ 297 (788)
.|. ..++..|+.+-... |+-.+...++-++++
T Consensus 359 ~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 359 APR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred Cch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 444 23344444444433 555555555554443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=7e-08 Score=93.43 Aligned_cols=100 Identities=29% Similarity=0.403 Sum_probs=84.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 003891 55 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 131 (788)
Q Consensus 55 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 131 (788)
+....+++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+.+++++++..|++...+..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 3567789999999999999999999999999887653 5789999999999999999999999999999998887777
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHH
Q 003891 132 MAIALTDLGTKVKLEGDINQGVA 154 (788)
Q Consensus 132 la~~l~~lg~~~~~~g~~~~A~~ 154 (788)
++.++..++......+++++|+.
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~ 134 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEA 134 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHH
Confidence 77777777655555555555443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.1e-08 Score=84.16 Aligned_cols=99 Identities=39% Similarity=0.653 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~ 105 (788)
+++.+|..+...|++++|+..++++++..|.+..+++.+|.++...+++++|+.++++++...|.+...+..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 36778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCC
Q 003891 106 GDLESAIACYERCLAVSPN 124 (788)
Q Consensus 106 g~~~~A~~~~~~al~~~p~ 124 (788)
|++++|...++++++..|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988763
|
|
| >cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.5e-08 Score=107.51 Aligned_cols=155 Identities=22% Similarity=0.317 Sum_probs=102.5
Q ss_pred CCCCCCCeEEEecCCC--CcCCHHHH-HHHHHHHhHcCCcEEE-EecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcC
Q 003891 520 PALTNGFITFGSFNNL--AKITPKVL-QVWARILCAVPNSRLV-VKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLIL 595 (788)
Q Consensus 520 ~~~~~~~~~f~~~~~~--~K~~~~~~-~~~~~il~~~p~~~l~-l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~ 595 (788)
.+++++..++.++.+. .|...+++ +++..+. . ++.+++ +.|.+ ..+.+++.++++ . ++|.|.|.+
T Consensus 175 ~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~-~-~~~~~~~i~G~g-----~~~~l~~~~~~~--~-~~v~~~g~~- 243 (350)
T cd03785 175 LGLRPGKPTLLVFGGSQGARAINEAVPEALAELL-R-KRLQVIHQTGKG-----DLEEVKKAYEEL--G-VNYEVFPFI- 243 (350)
T ss_pred cCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhh-c-cCeEEEEEcCCc-----cHHHHHHHHhcc--C-CCeEEeehh-
Confidence 4555666556565543 33333333 4444443 2 455544 55554 345666666665 3 789999985
Q ss_pred CcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCcc---CccchhHHHhhhCCcccccC---CHHHHHHHH
Q 003891 596 LNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVH---AHNVGVSLLTKVGLKHLIAK---NEDEYVQLA 669 (788)
Q Consensus 596 ~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~---~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a 669 (788)
.++..+|..||+++.+ +|++|++|||++|+|||+.+-... .....+..+...|..-++.. |.+++.+..
T Consensus 244 --~~~~~~l~~ad~~v~~---sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i 318 (350)
T cd03785 244 --DDMAAAYAAADLVISR---AGASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAAL 318 (350)
T ss_pred --hhHHHHHHhcCEEEEC---CCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHH
Confidence 5777888889999953 367899999999999998653221 11122345555676655543 799999999
Q ss_pred HHHhcCHHHHHHHHHHHHHHh
Q 003891 670 LQLASDVTALANLRMSLRDLM 690 (788)
Q Consensus 670 ~~l~~d~~~~~~~r~~~~~~~ 690 (788)
..+.+|++.++.|+.+.++..
T Consensus 319 ~~ll~~~~~~~~~~~~~~~~~ 339 (350)
T cd03785 319 LELLSDPERLKAMAEAARSLA 339 (350)
T ss_pred HHHhcCHHHHHHHHHHHHhcC
Confidence 999999999999999887654
|
It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.6e-08 Score=81.50 Aligned_cols=67 Identities=42% Similarity=0.686 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCC
Q 003891 57 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSP 123 (788)
Q Consensus 57 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 123 (788)
++..|..+|.+++..|++++|+.+|+++++.+|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45566666666666666666666666666666666666666666666666 56666666666666665
|
... |
| >PLN02275 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.8e-08 Score=109.08 Aligned_cols=135 Identities=14% Similarity=0.112 Sum_probs=97.6
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHH-----------------hHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCC
Q 003891 525 GFITFGSFNNL--AKITPKVLQVWARIL-----------------CAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLES 585 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~~~~~~~~il-----------------~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~ 585 (788)
..++++..+++ .|..+.+++++..+. +..|+.+|+++|+| +.++.+++.++++|++
T Consensus 212 ~~~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G----~~~~~l~~~~~~~~l~- 286 (371)
T PLN02275 212 RPALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKG----PQKAMYEEKISRLNLR- 286 (371)
T ss_pred CcEEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCC----CCHHHHHHHHHHcCCC-
Confidence 33455566664 788899999877664 23589999999988 6788999999999997
Q ss_pred CcEEEcC-CcCCcHHHHHhcccccEeecCCC----CCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC
Q 003891 586 LRVDLLP-LILLNHDHMQAYSLMDISLDTFP----YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK 660 (788)
Q Consensus 586 ~rv~~~~-~~~~~~~~~~~~~~~Dv~Ld~~~----~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~ 660 (788)
+ ++|.+ .++ .++....|+.+|+++-+++ .+-+++++|||+||+|||+....... .++ .-|..+++..
T Consensus 287 ~-v~~~~~~~~-~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~-----eiv-~~g~~G~lv~ 358 (371)
T PLN02275 287 H-VAFRTMWLE-AEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIG-----ELV-KDGKNGLLFS 358 (371)
T ss_pred c-eEEEcCCCC-HHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCChH-----HHc-cCCCCeEEEC
Confidence 5 77765 566 7889999999999985432 23478999999999999984322111 122 2255566667
Q ss_pred CHHHHHHHHHHH
Q 003891 661 NEDEYVQLALQL 672 (788)
Q Consensus 661 ~~~~y~~~a~~l 672 (788)
|.+++++...+|
T Consensus 359 ~~~~la~~i~~l 370 (371)
T PLN02275 359 SSSELADQLLEL 370 (371)
T ss_pred CHHHHHHHHHHh
Confidence 778777666554
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.1e-07 Score=87.25 Aligned_cols=117 Identities=22% Similarity=0.174 Sum_probs=91.7
Q ss_pred HcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHH
Q 003891 179 EMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMD 252 (788)
Q Consensus 179 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~ 252 (788)
..++...+...+++.++.+|+. ..+.+.+|.++...|++++|+..|++++...|+. ..+...++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 5677888888888888888877 5567778888888888888888888888877554 346778888888888888
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 253 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 296 (788)
Q Consensus 253 eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 296 (788)
+|+..++.. ...+-.+.++..+|.+|..+|++++|+..|++++
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 888888662 3333446677788889999999999998888874
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-06 Score=101.78 Aligned_cols=232 Identities=10% Similarity=0.034 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC----CHHHHHHHHHHHHHCCCHHHHHHHH
Q 003891 41 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-RPM----YAEAYCNMGVIYKNRGDLESAIACY 115 (788)
Q Consensus 41 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~-~p~----~~~~~~~la~~~~~~g~~~~A~~~~ 115 (788)
.+..+-|++.+..+|+..-.|........+.++.++|.+.+++|+.. ++. ....|..+-++...-|.-+.-.+.|
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 34567788888899999999999999999999999999999999874 333 2345555555555667777888899
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003891 116 ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 195 (788)
Q Consensus 116 ~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 195 (788)
++|.+..... .+|..|..+|...+.+++|.++++..++...+...+|..++..++.+++-+.|...+++|++
T Consensus 1521 eRAcqycd~~--------~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1521 ERACQYCDAY--------TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred HHHHHhcchH--------HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 9998765432 35667777888888999999999999999988899999999999999999999999999999
Q ss_pred cCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH
Q 003891 196 FNPH--CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PTYAEA 271 (788)
Q Consensus 196 ~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~--p~~~~~ 271 (788)
.-|. +.+.....|.+-++.|+.+.+..+|+..+...|...+.|.-+...-.+.|+.+.+...|++++.+. +.....
T Consensus 1593 ~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKf 1672 (1710)
T KOG1070|consen 1593 SLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKF 1672 (1710)
T ss_pred hcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHH
Confidence 9887 788888999999999999999999999999999999999999999999999999999999999874 333444
Q ss_pred HHHHHHHHH
Q 003891 272 YNNLGVLYR 280 (788)
Q Consensus 272 ~~~la~~~~ 280 (788)
++..=.-|.
T Consensus 1673 ffKkwLeyE 1681 (1710)
T KOG1070|consen 1673 FFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHHH
Confidence 444333333
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-07 Score=95.07 Aligned_cols=122 Identities=20% Similarity=0.141 Sum_probs=114.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHH
Q 003891 148 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVECY 224 (788)
Q Consensus 148 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~~ 224 (788)
+.++.+.-++.-+..+|++.+-|..||.+|..+|+++.|...|.+++++.|++++.+..+|.++..+. ...++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 46777888889999999999999999999999999999999999999999999999999999888754 467899999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 003891 225 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 269 (788)
Q Consensus 225 ~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~ 269 (788)
++++..+|.+..+.+.||..++.+|+|.+|...+++.++..|.+.
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999999999999999987653
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.2e-07 Score=104.70 Aligned_cols=142 Identities=22% Similarity=0.200 Sum_probs=118.2
Q ss_pred CCCCHHHH--HHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHh
Q 003891 163 NWHYADAM--YNLGVAYGEMLK---FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD--------NLDKAVECYQMALS 229 (788)
Q Consensus 163 ~p~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~eA~~~~~~al~ 229 (788)
.|.+.++| +..|.-+...++ .++|+.+|+++++.+|++..++..++.++.... +..++.+..++++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 45555554 455666655544 789999999999999999999998888775542 34566666777666
Q ss_pred h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhh
Q 003891 230 I--KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 305 (788)
Q Consensus 230 ~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a 305 (788)
. .+..+.++..+|..+...|++++|...+++++.++| +..+|..+|.++...|++++|++.|++|+.++|.++..
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 4 677788999999999999999999999999999999 48899999999999999999999999999999998853
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.4e-09 Score=105.53 Aligned_cols=241 Identities=15% Similarity=0.067 Sum_probs=158.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 106 (788)
+-..|+.|+++|+|++|+.||.+++..+|.|+..+.+.+..|++++.|..|...++.++.++..+..+|...+..-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45567778888888888888888888888888888888888888888888888888888887777778888888888888
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 003891 107 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 186 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 186 (788)
+..+|.+.++.++++.|++.+....++. +. ...++ +-+.+..|. +-.|
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~----i~-------Sl~E~----~I~~KsT~G-----------------~~~A 227 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLAR----IN-------SLRER----KIATKSTPG-----------------FTPA 227 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHH----hc-------chHhh----hHHhhcCCC-----------------CCcc
Confidence 8888888888888888776543322221 11 11111 001111111 1112
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 003891 187 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 266 (788)
Q Consensus 187 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p 266 (788)
.+-..+++.+ -.-|..+...|.++.++.++-+-+....++...-.+ +..|.+..++++++.-..+++..+|
T Consensus 228 ~Q~~~Q~l~~--------K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~ 298 (536)
T KOG4648|consen 228 RQGMIQILPI--------KKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKP 298 (536)
T ss_pred ccchhhhccc--------cCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCC
Confidence 2222222211 112455666677777777777766555444444344 6667777888888888888888877
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHh
Q 003891 267 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 308 (788)
Q Consensus 267 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 308 (788)
........-+..---.|...++...++.++.+.|.+..+...
T Consensus 299 s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~ 340 (536)
T KOG4648|consen 299 TPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKET 340 (536)
T ss_pred CcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhh
Confidence 765555555555556677788999999999999998876543
|
|
| >cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc) | Back alignment and domain information |
|---|
Probab=98.78 E-value=8e-08 Score=105.29 Aligned_cols=295 Identities=14% Similarity=0.109 Sum_probs=164.1
Q ss_pred hhhhhhcccCC-CceEEEEEeccccCChhh-HHHHHH-HhhhCCeEEEccCCC----------HHHHHHHHHhCCCcEEE
Q 003891 372 FIEAPLVYHDY-QNYKVVVYSAVVKADAKT-IRFREK-VMKKGGIWRDIYGID----------EKKVAAMVREDKIDILV 438 (788)
Q Consensus 372 ~~~~~l~~~dr-~~fev~~Y~~~~~~D~~t-~~~r~~-~~~~~~~~~~~~~~~----------~~~~a~~i~~d~idilv 438 (788)
.+.+++..... .++++.+..++..-|..- ..+..- .....+++-.+.+.+ ..++.+.|++.++||++
T Consensus 14 ~~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvV~ 93 (363)
T cd03786 14 KLAPLIRALKKDPGFELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQTAGLLIGLEAVLLEEKPDLVL 93 (363)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 34455555444 488998888876555331 111211 111123333344331 14567778899999986
Q ss_pred eCCCCCCCCcccccccCCCCeEEecccC-CCCCCCCCccE-------EEecCCCCCcCccCCC-------ccceEEcCCC
Q 003891 439 ELTGHTANNKLGMMACQPAPVQVTWIGY-PNTTGLPTIDY-------RITDSLADPPETKQKH-------VEELIRLPEC 503 (788)
Q Consensus 439 dl~g~t~~~~~~~~a~r~Apvq~~~~g~-~~ttg~~~~Dy-------~i~d~~~~p~~~~~~~-------~e~l~~lp~~ 503 (788)
=. |++...-...++.|..-+.+...-+ -.|.-.+.++. .++|.++.|.+....+ .+++...++.
T Consensus 94 ~~-g~~~~~~~~~~aa~~~~iPvv~~~~g~~s~~~~~~~~~~r~~~~~~ad~~~~~s~~~~~~l~~~G~~~~kI~vign~ 172 (363)
T cd03786 94 VL-GDTNETLAAALAAFKLGIPVAHVEAGLRSFDRGMPDEENRHAIDKLSDLHFAPTEEARRNLLQEGEPPERIFVVGNT 172 (363)
T ss_pred Ee-CCchHHHHHHHHHHHcCCCEEEEecccccCCCCCCchHHHHHHHHHhhhccCCCHHHHHHHHHcCCCcccEEEECch
Confidence 43 3332222233444444444433211 01100011111 1345555554332211 3446566654
Q ss_pred ccc---cCCCCC-CCCCCCCCCCCCCCeEEEecCCC-----CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHH
Q 003891 504 FLC---YTPSPE-AGPVCPTPALTNGFITFGSFNNL-----AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRF 574 (788)
Q Consensus 504 ~~~---~~~~~~-~~~~~~~~~~~~~~~~f~~~~~~-----~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l 574 (788)
... +.+... ....+...+++++.+++.++++. .|..+.+++++.++... +.++++.+.+ ..+..+
T Consensus 173 v~d~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~--~~~vi~~~~~----~~~~~l 246 (363)
T cd03786 173 MIDALLRLLELAKKELILELLGLLPKKYILVTLHRVENVDDGEQLEEILEALAELAEE--DVPVVFPNHP----RTRPRI 246 (363)
T ss_pred HHHHHHHHHHhhccchhhhhcccCCCCEEEEEeCCccccCChHHHHHHHHHHHHHHhc--CCEEEEECCC----ChHHHH
Confidence 321 111111 11111234556666666666664 46777888888777543 4555554444 456778
Q ss_pred HHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCC
Q 003891 575 LSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGL 654 (788)
Q Consensus 575 ~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl 654 (788)
++.+.+.|...++|.|.+... ..++...|..||+++-++. +.+.||+++|+|||+..... ..-.+...|.
T Consensus 247 ~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~ad~~v~~Sg----gi~~Ea~~~g~PvI~~~~~~-----~~~~~~~~g~ 316 (363)
T cd03786 247 REAGLEFLGHHPNVLLISPLG-YLYFLLLLKNADLVLTDSG----GIQEEASFLGVPVLNLRDRT-----ERPETVESGT 316 (363)
T ss_pred HHHHHhhccCCCCEEEECCcC-HHHHHHHHHcCcEEEEcCc----cHHhhhhhcCCCEEeeCCCC-----ccchhhheee
Confidence 888888887347899998765 5677778899999996642 35789999999999975321 1112333466
Q ss_pred cccccCCHHHHHHHHHHHhcCHHHHHHHH
Q 003891 655 KHLIAKNEDEYVQLALQLASDVTALANLR 683 (788)
Q Consensus 655 ~~~ia~~~~~y~~~a~~l~~d~~~~~~~r 683 (788)
.-++..|.++.++....+.+|+..++.++
T Consensus 317 ~~~~~~~~~~i~~~i~~ll~~~~~~~~~~ 345 (363)
T cd03786 317 NVLVGTDPEAILAAIEKLLSDEFAYSLMS 345 (363)
T ss_pred EEecCCCHHHHHHHHHHHhcCchhhhcCC
Confidence 55555678999999999999987766654
|
The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.7e-07 Score=85.30 Aligned_cols=196 Identities=18% Similarity=0.179 Sum_probs=126.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 003891 57 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 136 (788)
Q Consensus 57 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l 136 (788)
.+..++..|..|-..|-..-|...|.+++.+.|+.+.+++.+|..+...|+++.|.+.|...++++|.+.-+..+.+..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 35567778888888888889999999999999999999999999999999999999999999999998876555554444
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH-HHHhcCCCCHHHHHHHHHHHHHcC
Q 003891 137 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE-LAFHFNPHCAEACNNLGVIYKDRD 215 (788)
Q Consensus 137 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~~p~~~~~~~~la~~~~~~g 215 (788)
+. -|++.-|.+-+.+-.+.+|+++---..+-.. ...-+..+|...+. ++...+.+ ...|+..+.. .|
T Consensus 144 YY-------~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e-~WG~~iV~~y---Lg 211 (297)
T COG4785 144 YY-------GGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKE-QWGWNIVEFY---LG 211 (297)
T ss_pred ee-------cCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhccHh-hhhHHHHHHH---Hh
Confidence 43 4688888888888888888887532222111 22335556655443 33333322 2222222111 12
Q ss_pred CHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003891 216 NLDKAVECYQMALSIKPNF-------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 265 (788)
Q Consensus 216 ~~~eA~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~ 265 (788)
+..+ ...++++..-..++ .+.++.+|..+...|+.++|...|+-++..+
T Consensus 212 kiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 212 KISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 2211 12233333322222 3466777777777777777777777776653
|
|
| >PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.9e-08 Score=106.06 Aligned_cols=138 Identities=22% Similarity=0.221 Sum_probs=95.1
Q ss_pred cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHc-CCCCCcEEEcCCcCCcHHHHHhcccccEeecCCC
Q 003891 537 KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQL-GLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP 615 (788)
Q Consensus 537 K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~-gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~ 615 (788)
++.+.+++++.++.+..|+.++++.+++ ...++.+++.+.+. |+. +.+.. .+...+|+.+|+++-++
T Consensus 202 ~~~~~l~~a~~~l~~~~~~~~~ii~~~~---~~~~~~~~~~~~~~~~~~---v~~~~-----~~~~~~~~~aDl~v~~s- 269 (380)
T PRK00025 202 RLLPPFLKAAQLLQQRYPDLRFVLPLVN---PKRREQIEEALAEYAGLE---VTLLD-----GQKREAMAAADAALAAS- 269 (380)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCC---hhhHHHHHHHHhhcCCCC---eEEEc-----ccHHHHHHhCCEEEECc-
Confidence 4578888999988888899998888652 14566777777777 664 44432 35677888899999753
Q ss_pred CCCchhHHHHhhhCCceeecCCCccCccchhHHH---hhhC----------Cccccc--CCHHHHHHHHHHHhcCHHHHH
Q 003891 616 YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL---TKVG----------LKHLIA--KNEDEYVQLALQLASDVTALA 680 (788)
Q Consensus 616 ~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l---~~~g----------l~~~ia--~~~~~y~~~a~~l~~d~~~~~ 680 (788)
|++++|||++|+|||+.+.-..-....+..+ ...| .++++. .|+++..+...++.+|++.++
T Consensus 270 ---G~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~ 346 (380)
T PRK00025 270 ---GTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLADGARRQ 346 (380)
T ss_pred ---cHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcCHHHHH
Confidence 6777799999999998643211111111111 0112 234443 468899999999999999999
Q ss_pred HHHHHHHHH
Q 003891 681 NLRMSLRDL 689 (788)
Q Consensus 681 ~~r~~~~~~ 689 (788)
.|++++++.
T Consensus 347 ~~~~~~~~~ 355 (380)
T PRK00025 347 ALLEGFTEL 355 (380)
T ss_pred HHHHHHHHH
Confidence 999987544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.7e-07 Score=103.95 Aligned_cols=142 Identities=16% Similarity=0.109 Sum_probs=82.4
Q ss_pred hCCCCHHHH--HHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHH
Q 003891 53 IDPHYAPAY--YNLGVVYSELMQ---YDTALGCYEKAALERPMYAEAYCNMGVIYKNR--------GDLESAIACYERCL 119 (788)
Q Consensus 53 ~~p~~~~~~--~~lg~~~~~~g~---~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al 119 (788)
..|.+..+| +..|..+...++ ..+|+.+|+++++++|+++.++..++.+|... .+..++.+..++++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 344443333 344444444333 55666666666666666666666665555432 12344555555555
Q ss_pred hh--CCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 003891 120 AV--SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 197 (788)
Q Consensus 120 ~~--~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 197 (788)
.+ ++..+.. +..+|..+...|++++|...+++++.++| +..+|..+|.++...|++++|++.|++++.++
T Consensus 412 al~~~~~~~~~-------~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 412 ALPELNVLPRI-------YEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hcccCcCChHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 53 3333322 22233333345677777777777777777 46677777777777777777777777777777
Q ss_pred CCCHH
Q 003891 198 PHCAE 202 (788)
Q Consensus 198 p~~~~ 202 (788)
|.++.
T Consensus 484 P~~pt 488 (517)
T PRK10153 484 PGENT 488 (517)
T ss_pred CCCch
Confidence 77654
|
|
| >PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.2e-08 Score=113.67 Aligned_cols=178 Identities=16% Similarity=0.130 Sum_probs=125.6
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCCCCH-HHHHHHHHHHHHc--------CCC-CC-c
Q 003891 525 GFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCCD-SVRHRFLSTLEQL--------GLE-SL-R 587 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~l~~~~~~~~-~~~~~l~~~~~~~--------gi~-~~-r 587 (788)
+..+++++.|+ .|..+..++++.++++..|+ .+|++++.|..+. +..+.+++.+.+. |.. -. .
T Consensus 264 ~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv 343 (726)
T PRK14501 264 GRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPI 343 (726)
T ss_pred CCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceE
Confidence 45578888988 89999999999999999996 6888887553222 3334444444432 221 11 2
Q ss_pred EEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhh-----CCceeecCCCccCccchhH-HHhhhCCcccc--
Q 003891 588 VDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYM-----GVPCVTMAGSVHAHNVGVS-LLTKVGLKHLI-- 658 (788)
Q Consensus 588 v~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~-----GvPvvt~~g~~~~~r~~~~-~l~~~gl~~~i-- 658 (788)
+.|.+.++ .++..+.|+.+||||.|+-+ +-+.+++|||++ |+|||+ ...|++ -|. ..++
T Consensus 344 ~~~~~~~~-~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls-------~~~G~~~~l~----~~llv~ 411 (726)
T PRK14501 344 HYFYRSLP-FEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILS-------EMAGAAAELA----EALLVN 411 (726)
T ss_pred EEEeCCCC-HHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEe-------cccchhHHhC----cCeEEC
Confidence 34556666 79999999999999999988 559999999999 556664 222211 111 1222
Q ss_pred cCCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHh
Q 003891 659 AKNEDEYVQLALQLASDV-TALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYC 717 (788)
Q Consensus 659 a~~~~~y~~~a~~l~~d~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 717 (788)
..|.+++++...++.+++ +.+....+++++++. -||...+++.+.+.|+++|...-
T Consensus 412 P~d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~---~~~~~~w~~~~l~~l~~~~~~~~ 468 (726)
T PRK14501 412 PNDIEGIAAAIKRALEMPEEEQRERMQAMQERLR---RYDVHKWASDFLDELREAAEKNK 468 (726)
T ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHhhhh
Confidence 358999999998888754 444444456777754 37999999999999999998654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.5e-07 Score=96.35 Aligned_cols=166 Identities=11% Similarity=0.071 Sum_probs=120.0
Q ss_pred HHHHHHHHHCC---CHHHHHHHHHHHH---hhCCCcHHHHHHHHHHHHHhhhh--hhhcCCHHHHHHHHHHHHHhCCCCH
Q 003891 96 CNMGVIYKNRG---DLESAIACYERCL---AVSPNFEIAKNNMAIALTDLGTK--VKLEGDINQGVAYYKKALYYNWHYA 167 (788)
Q Consensus 96 ~~la~~~~~~g---~~~~A~~~~~~al---~~~p~~~~~~~~la~~l~~lg~~--~~~~g~~~~A~~~~~~al~~~p~~~ 167 (788)
+..|......+ ..+.|+.+|.+++ +++|++..++..++.++...... .....+..+|.+..+++++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 55565555544 3567888899999 88888888888777777654221 1134566778888888888888888
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HH
Q 003891 168 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV-YT 246 (788)
Q Consensus 168 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~-~~ 246 (788)
.++..+|.++...++++.|...|++++.++|+.+.+++..|.+....|+.++|.+.++++++++|....+-...-.+ .+
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~ 418 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY 418 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888765543333333 33
Q ss_pred HcCCHHHHHHHHHHH
Q 003891 247 VQGKMDAAAEMIEKA 261 (788)
Q Consensus 247 ~~g~~~eA~~~l~ka 261 (788)
-....++|+..|-+-
T Consensus 419 ~~~~~~~~~~~~~~~ 433 (458)
T PRK11906 419 VPNPLKNNIKLYYKE 433 (458)
T ss_pred cCCchhhhHHHHhhc
Confidence 445566666665443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.1e-07 Score=97.14 Aligned_cols=72 Identities=24% Similarity=0.350 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHh
Q 003891 237 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 308 (788)
Q Consensus 237 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 308 (788)
++.|++.++.++++|.+|+....++|.++|++..+++..|.++..+|+++.|+..|+++++++|+|..+...
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~e 330 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAE 330 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 344555555555555555555555555555555555555555555555555555555555555555444443
|
|
| >TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=1e-07 Score=103.80 Aligned_cols=155 Identities=22% Similarity=0.288 Sum_probs=101.7
Q ss_pred CCCCCCeEEEecCCC--CcCCHH-HHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCc
Q 003891 521 ALTNGFITFGSFNNL--AKITPK-VLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 597 (788)
Q Consensus 521 ~~~~~~~~f~~~~~~--~K~~~~-~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~ 597 (788)
+++++.++++++++. .|.... +++++.++.+ ++.++++++++ ...+.+++.+++.|+. +++.|. . .
T Consensus 174 ~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~--~~~~~~~~~g~----~~~~~l~~~~~~~~l~-~~v~~~-~---~ 242 (348)
T TIGR01133 174 GLREGKPTILVLGGSQGAKILNELVPKALAKLAE--KGIQIVHQTGK----NDLEKVKNVYQELGIE-AIVTFI-D---E 242 (348)
T ss_pred CCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhh--cCcEEEEECCc----chHHHHHHHHhhCCce-EEecCc-c---c
Confidence 556667777777654 333333 2355555443 23455444332 1236788888888885 666665 1 2
Q ss_pred HHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccC--ccchhHHHhhhCCccccc-C--CHHHHHHHHHHH
Q 003891 598 HDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHA--HNVGVSLLTKVGLKHLIA-K--NEDEYVQLALQL 672 (788)
Q Consensus 598 ~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~--~r~~~~~l~~~gl~~~ia-~--~~~~y~~~a~~l 672 (788)
+....|..||+++-+ +|++|++|||++|+|||+.+-.... .+..+.++...|..-++. . +.+++++...++
T Consensus 243 -~~~~~l~~ad~~v~~---~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~l 318 (348)
T TIGR01133 243 -NMAAAYAAADLVISR---AGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKL 318 (348)
T ss_pred -CHHHHHHhCCEEEEC---CChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHH
Confidence 566777889999953 4678899999999999986432211 122334566655554443 2 499999999999
Q ss_pred hcCHHHHHHHHHHHHHHh
Q 003891 673 ASDVTALANLRMSLRDLM 690 (788)
Q Consensus 673 ~~d~~~~~~~r~~~~~~~ 690 (788)
.+|++.+++|+++.++..
T Consensus 319 l~~~~~~~~~~~~~~~~~ 336 (348)
T TIGR01133 319 LLDPANLEAMAEAARKLA 336 (348)
T ss_pred HcCHHHHHHHHHHHHhcC
Confidence 999999999999887654
|
RL J Bacteriol 1993 Mar;175(6):1841-3 |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.4e-07 Score=96.65 Aligned_cols=137 Identities=16% Similarity=0.153 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 20 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH---------------YAPAYYNLGVVYSELMQYDTALGCYEKA 84 (788)
Q Consensus 20 ~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~ka 84 (788)
....|......|+.+++.|+|..|...|+++++.-.. ...++.+++.|+.++++|.+|+..+.++
T Consensus 204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv 283 (397)
T KOG0543|consen 204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV 283 (397)
T ss_pred HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence 3445666788899999999999999999999876331 1347899999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh
Q 003891 85 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 162 (788)
Q Consensus 85 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~ 162 (788)
|..+|+|..+++..|.++..+|+|+.|+..|++++++.|++..+...+..+-.... ...+...+.|.+++..
T Consensus 284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~------~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIR------EYEEKEKKMYANMFAK 355 (397)
T ss_pred HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999877766655544432 2334446667766654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.1e-09 Score=104.06 Aligned_cols=209 Identities=13% Similarity=0.053 Sum_probs=111.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhh
Q 003891 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 142 (788)
Q Consensus 63 ~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~ 142 (788)
..|+-|+++|.|++|+.+|.+++..+|.++..+.+.+..|+++..|..|...++.++.++..+..++...+.+-.
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~----- 176 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE----- 176 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH-----
Confidence 345555555555555555555555555555555555555555555555555555555554443333322222222
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 143 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 222 (788)
Q Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 222 (788)
..|+..+|.+-++.++++.|++.+....++.+-. ..++. -+.+..| | +-+|.+
T Consensus 177 --~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~----I~~KsT~----------------G-~~~A~Q 229 (536)
T KOG4648|consen 177 --SLGNNMEAKKDCETVLALEPKNIELKKSLARINS----LRERK----IATKSTP----------------G-FTPARQ 229 (536)
T ss_pred --HHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhh----HHhhcCC----------------C-CCcccc
Confidence 2335555555555555555554333222222111 10000 0000011 1 112222
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003891 223 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302 (788)
Q Consensus 223 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 302 (788)
-..+++.+ -.-|..+...|.++.++..+..-+....++.....+ +..|.+.-++++++.-..+++..+|..
T Consensus 230 ~~~Q~l~~--------K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~ 300 (536)
T KOG4648|consen 230 GMIQILPI--------KKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTP 300 (536)
T ss_pred chhhhccc--------cCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCc
Confidence 22222211 223566788899999999998887776665555445 777888888999999988988888877
Q ss_pred hhhHHhHHHH
Q 003891 303 RNAGQNRLLA 312 (788)
Q Consensus 303 ~~a~~~~lla 312 (788)
..+...+--+
T Consensus 301 ~~~~s~~~~A 310 (536)
T KOG4648|consen 301 MPDTSGPPKA 310 (536)
T ss_pred CcccCCCchh
Confidence 6655444333
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.7e-07 Score=83.87 Aligned_cols=116 Identities=24% Similarity=0.152 Sum_probs=101.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHH
Q 003891 146 EGDINQGVAYYKKALYYNWHY---ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDK 219 (788)
Q Consensus 146 ~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~e 219 (788)
.++..++...+++.++.+|+. ..+.+.+|.++...|++++|...|+.++...|+. ..+.+.++.++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 678888988999999999998 4578889999999999999999999999987654 4578889999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 220 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 262 (788)
Q Consensus 220 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal 262 (788)
|+..++. +...+-.+.++..+|.+|...|++++|+..|++++
T Consensus 104 Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 104 ALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999976 33344556788899999999999999999999874
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.8e-08 Score=83.61 Aligned_cols=81 Identities=25% Similarity=0.375 Sum_probs=73.0
Q ss_pred cCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 003891 37 AGNTQDGIQKYYEALKIDPH--YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 114 (788)
Q Consensus 37 ~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 114 (788)
+|++++|+..|+++++.+|. +...++.+|.++++.|+|++|+..+++ .+.++.+....+.+|.++..+|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 68999999999999999995 466788899999999999999999999 888888889999999999999999999999
Q ss_pred HHHH
Q 003891 115 YERC 118 (788)
Q Consensus 115 ~~~a 118 (788)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.3e-06 Score=81.58 Aligned_cols=255 Identities=16% Similarity=0.097 Sum_probs=178.1
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 003891 34 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 113 (788)
Q Consensus 34 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~ 113 (788)
++-.|+|.+++..-.+.-... ...+....+.+.|..+|++...+.-....- .....+...++.....-++.++-+.
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHHHH
Confidence 444588888888777654433 667777888888888888876555443322 1123445555555555555555554
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003891 114 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 193 (788)
Q Consensus 114 ~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 193 (788)
-..+.+........ ...+..-+.++...+++++|.+...+. .+.++...--.++.++.+.+-|.+.+++.
T Consensus 94 ~l~E~~a~~~~~sn-----~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 94 SLYELVADSTDGSN-----LIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHhhccchh-----HHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443332222111 112233356677788999999888763 34556666677888899999999999998
Q ss_pred HhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 003891 194 FHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 269 (788)
Q Consensus 194 l~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~ 269 (788)
.+++.+ ..+..||..+.+ .+++.+|.-+|++.-+..+..+..+..++.+...+++|++|...++.++..+++++
T Consensus 164 q~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp 241 (299)
T KOG3081|consen 164 QQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDP 241 (299)
T ss_pred HccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCH
Confidence 887654 344445555443 35788999999999888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCCCChh
Q 003891 270 EAYNNLGVLYRDAGSISLAID-AYEQCLKIDPDSRN 304 (788)
Q Consensus 270 ~~~~~la~~~~~~g~~~eA~~-~~~~al~l~p~~~~ 304 (788)
+.+.++..+-...|...++.+ ...+....+|+++-
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 999999999888888766554 45555566676543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.2e-08 Score=78.00 Aligned_cols=64 Identities=31% Similarity=0.490 Sum_probs=45.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 003891 240 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 303 (788)
Q Consensus 240 ~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~ 303 (788)
.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+.+|+++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566777777777777777777777777777777777777777777777777777777777653
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.3e-07 Score=98.05 Aligned_cols=153 Identities=14% Similarity=0.102 Sum_probs=125.6
Q ss_pred HHHHHHHHH---HcCCCChhhHHHHHHHHHHHHHHHH--HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 003891 2 LVASYHKAL---SADPSYKPAAECLAIVLTDLGTSLK--LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT 76 (788)
Q Consensus 2 Ai~~~~kaL---~~~P~~~~a~~~la~~l~~lg~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 76 (788)
|+.++.+++ ..+|+...++..+|.+++.....-. ...+..+|.+..+++++++|.++.++..+|.++...++++.
T Consensus 277 Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~ 356 (458)
T PRK11906 277 AMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKV 356 (458)
T ss_pred HHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhh
Confidence 678899999 9999999999999988877633111 34567789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHH
Q 003891 77 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 156 (788)
Q Consensus 77 A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~ 156 (788)
|...|++++.++|+.+.+++..|.+....|+.++|.+.++++++++|.-..+-.. ++-.-.+.....++|++.|
T Consensus 357 a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 357 SHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVI------KECVDMYVPNPLKNNIKLY 430 (458)
T ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHH------HHHHHHHcCCchhhhHHHH
Confidence 9999999999999999999999999999999999999999999999985432211 1111011234677788777
Q ss_pred HHHH
Q 003891 157 KKAL 160 (788)
Q Consensus 157 ~~al 160 (788)
-+-.
T Consensus 431 ~~~~ 434 (458)
T PRK11906 431 YKET 434 (458)
T ss_pred hhcc
Confidence 6543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.3e-08 Score=83.16 Aligned_cols=81 Identities=28% Similarity=0.420 Sum_probs=54.9
Q ss_pred cCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003891 214 RDNLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 291 (788)
Q Consensus 214 ~g~~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 291 (788)
+|++++|+.+++++++..|. +...++.+|.+|+..|++++|+..+++ .+.++.+...++.+|.++.++|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777777777664 344566677777777777777777777 666666666666777777777777777777
Q ss_pred HHHH
Q 003891 292 YEQC 295 (788)
Q Consensus 292 ~~~a 295 (788)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.2e-07 Score=85.87 Aligned_cols=105 Identities=10% Similarity=0.030 Sum_probs=79.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003891 197 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 276 (788)
Q Consensus 197 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la 276 (788)
.++..+..+..|.-++..|++++|...|+-..-.++.+++.+..||.++..+++|++|+..|..+..++++++...+..|
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 44445666777777777777777777777777777777777777788887788888888888877777777777777888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003891 277 VLYRDAGSISLAIDAYEQCLKIDPDS 302 (788)
Q Consensus 277 ~~~~~~g~~~eA~~~~~~al~l~p~~ 302 (788)
.||..+|+.++|+.+|+.+++ .|.+
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 888888888888888777776 3443
|
|
| >PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.9e-07 Score=108.20 Aligned_cols=179 Identities=15% Similarity=0.069 Sum_probs=130.7
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcE----EEEecCCC-CCHHHHHHHHHHHHHcC--CCCCc--------
Q 003891 525 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSR----LVVKCKPF-CCDSVRHRFLSTLEQLG--LESLR-------- 587 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~----l~l~~~~~-~~~~~~~~l~~~~~~~g--i~~~r-------- 587 (788)
+..++.++.|+ .|..+..+++|.++++..|+.+ |+.++.+. ...+..+.+++.+.+.+ |. .+
T Consensus 278 ~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In-~~~g~~~~~p 356 (797)
T PLN03063 278 GRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRIN-GRFGSVSSVP 356 (797)
T ss_pred CCeEEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhh-cccccCCCce
Confidence 44567788877 8999999999999999999863 44444432 23356677888887775 43 22
Q ss_pred EEEcC-CcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCc----eeecCCCccCccchhHHHhhhCCcccc--c
Q 003891 588 VDLLP-LILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP----CVTMAGSVHAHNVGVSLLTKVGLKHLI--A 659 (788)
Q Consensus 588 v~~~~-~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvP----vvt~~g~~~~~r~~~~~l~~~gl~~~i--a 659 (788)
|++++ .++ .++..++|+.+||||-|+-+ |-+.+++|||+||+| +|. |++++.- ..+|-..++ .
T Consensus 357 v~~l~~~v~-~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVl-------Se~~G~~-~~l~~~allVnP 427 (797)
T PLN03063 357 IHHLDCSVD-FNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVL-------SEFAGAG-QSLGAGALLVNP 427 (797)
T ss_pred eEEecCCCC-HHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEe-------eCCcCch-hhhcCCeEEECC
Confidence 33333 344 68999999999999999988 669999999999998 554 5444211 112333333 3
Q ss_pred CCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 003891 660 KNEDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRY 716 (788)
Q Consensus 660 ~~~~~y~~~a~~l~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 716 (788)
.|.++..+...++.+ +++++++..+++++.+.+ +|...+++.+.+.+..++...
T Consensus 428 ~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~v~~---~~~~~Wa~~fl~~l~~~~~~~ 482 (797)
T PLN03063 428 WNITEVSSAIKEALNMSDEERETRHRHNFQYVKT---HSAQKWADDFMSELNDIIVEA 482 (797)
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhh---CCHHHHHHHHHHHHHHHhhhh
Confidence 689999998888888 777887777777777654 589999999999999998754
|
|
| >cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds | Back alignment and domain information |
|---|
Probab=98.68 E-value=3e-07 Score=101.05 Aligned_cols=189 Identities=15% Similarity=0.117 Sum_probs=115.5
Q ss_pred ccceEEcCCCcc--ccCCCCCCCCCCCCCCCCCCCeEEEecCCCC-cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHH
Q 003891 494 VEELIRLPECFL--CYTPSPEAGPVCPTPALTNGFITFGSFNNLA-KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSV 570 (788)
Q Consensus 494 ~e~l~~lp~~~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~ 570 (788)
.+++..+|+..- .|.+....+. .+......+.+++|.++++. |... ++..++.+..|+.+|+|+|.+... ..
T Consensus 172 ~~~i~~i~ngvd~~~f~~~~~~~~-~~~~~~~~~~~~i~y~G~l~~~~d~---~ll~~la~~~p~~~~vliG~~~~~-~~ 246 (373)
T cd04950 172 NPNVVLVPNGVDYEHFAAARDPPP-PPADLAALPRPVIGYYGAIAEWLDL---ELLEALAKARPDWSFVLIGPVDVS-ID 246 (373)
T ss_pred CCCEEEcccccCHHHhhcccccCC-ChhHHhcCCCCEEEEEeccccccCH---HHHHHHHHHCCCCEEEEECCCcCc-cC
Confidence 377888886421 1222221110 01112234566788888775 4443 455566778899999999975111 11
Q ss_pred HHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC------CCchhHHHHhhhCCceeecCCCccCccc
Q 003891 571 RHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY------AGTTTTCESLYMGVPCVTMAGSVHAHNV 644 (788)
Q Consensus 571 ~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~------~g~~t~~eal~~GvPvvt~~g~~~~~r~ 644 (788)
... + .. .++|.|+|.++ .++...+++.+||++-|+.. +.++.++|+|++|+|||+.. +
T Consensus 247 ~~~----~--~~--~~nV~~~G~~~-~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~-------~ 310 (373)
T cd04950 247 PSA----L--LR--LPNVHYLGPKP-YKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATP-------L 310 (373)
T ss_pred hhH----h--cc--CCCEEEeCCCC-HHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecC-------c
Confidence 111 1 11 36899999987 78899999999999998843 22567999999999999843 2
Q ss_pred hhHHHhhhCCcccccCCHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 645 GVSLLTKVGLKHLIAKNEDEYVQLALQL-ASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 645 ~~~~l~~~gl~~~ia~~~~~y~~~a~~l-~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
+ .+....+..-+++.|.+++++...+. ..+...+...+. . +.+. ++++..+..+++..+
T Consensus 311 ~-~~~~~~~~~~~~~~d~~~~~~ai~~~l~~~~~~~~~~~~---~-~~~~--~sW~~~a~~~~~~l~ 370 (373)
T cd04950 311 P-EVRRYEDEVVLIADDPEEFVAAIEKALLEDGPARERRRL---R-LAAQ--NSWDARAAEMLEALQ 370 (373)
T ss_pred H-HHHhhcCcEEEeCCCHHHHHHHHHHHHhcCCchHHHHHH---H-HHHH--CCHHHHHHHHHHHHH
Confidence 2 22222232224567899999999985 444322222111 1 2222 688888888886554
|
The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.6e-08 Score=76.48 Aligned_cols=62 Identities=34% Similarity=0.503 Sum_probs=33.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 003891 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY 91 (788)
Q Consensus 30 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~ 91 (788)
+|..++..|++++|+..|+++++.+|++..+++.+|.++..+|++++|+..|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44455555555555555555555555555555555555555555555555555555555544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.2e-07 Score=92.04 Aligned_cols=106 Identities=25% Similarity=0.343 Sum_probs=84.5
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 003891 201 AEACNNLGVIY-KDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYN 273 (788)
Q Consensus 201 ~~~~~~la~~~-~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~---~~~~~ 273 (788)
....+..+..+ .+.|+|++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++..|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45556666654 55688888888888888888877 4688888888888888888888888888887764 67888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhH
Q 003891 274 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 274 ~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
.+|.++..+|++++|...|+++++..|+...+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 888888888888888888888888888876553
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.6e-07 Score=84.45 Aligned_cols=100 Identities=14% Similarity=-0.037 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~ 105 (788)
..+..|..++.+|++++|...|+-..-.+|.+.+.++.||.++..+++|++|+..|..+..++++++...+..|.||..+
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l 118 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHh
Confidence 36778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcH
Q 003891 106 GDLESAIACYERCLAVSPNFE 126 (788)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~ 126 (788)
|+.++|+.+|+.+++ .|.+.
T Consensus 119 ~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 119 RKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred CCHHHHHHHHHHHHh-CcchH
Confidence 999999999999998 45543
|
|
| >TIGR00215 lpxB lipid-A-disaccharide synthase | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-07 Score=103.66 Aligned_cols=250 Identities=16% Similarity=0.121 Sum_probs=140.5
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCCCCcccccccCCCCeEEec------ccCCCC---CCCCCccEEEecCCCCCcCccCCC
Q 003891 423 KKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTW------IGYPNT---TGLPTIDYRITDSLADPPETKQKH 493 (788)
Q Consensus 423 ~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~Apvq~~~------~g~~~t---tg~~~~Dy~i~d~~~~p~~~~~~~ 493 (788)
.++.+.|++.++|++|=.+| .+.+-....+.|..-|-+.+ |.++.- .-....|.+++-- |....+|
T Consensus 79 ~~~~~~l~~~kPd~vi~~g~-~~~~~~~a~aa~~~gip~v~~i~P~~waw~~~~~r~l~~~~d~v~~~~----~~e~~~~ 153 (385)
T TIGR00215 79 KEVVQLAKQAKPDLLVGIDA-PDFNLTKELKKKDPGIKIIYYISPQVWAWRKWRAKKIEKATDFLLAIL----PFEKAFY 153 (385)
T ss_pred HHHHHHHHhcCCCEEEEeCC-CCccHHHHHHHhhCCCCEEEEeCCcHhhcCcchHHHHHHHHhHhhccC----CCcHHHH
Confidence 46788899999999986665 44332211122222221111 333321 2224456555432 2222223
Q ss_pred cc---ceEEcCCCccccCCC--CCCCCCCCCCCCCCCCeEEEecC--CC---CcCCHHHHHHHHHHHhHcCCcEEEEecC
Q 003891 494 VE---ELIRLPECFLCYTPS--PEAGPVCPTPALTNGFITFGSFN--NL---AKITPKVLQVWARILCAVPNSRLVVKCK 563 (788)
Q Consensus 494 ~e---~l~~lp~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~~~~--~~---~K~~~~~~~~~~~il~~~p~~~l~l~~~ 563 (788)
.+ +.....+......+. +.....+...+++.+..+++.+. +. .|+.+.++++...+.+..|+.++++.+.
T Consensus 154 ~~~g~~~~~vGnPv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~ 233 (385)
T TIGR00215 154 QKKNVPCRFVGHPLLDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVV 233 (385)
T ss_pred HhcCCCEEEECCchhhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 22 333333322111010 00001112345665655555442 43 4688999999889988889988866433
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCcc
Q 003891 564 PFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHN 643 (788)
Q Consensus 564 ~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r 643 (788)
+. .....+.+..+..|.. .+|.+.+. +....|..+|+++-++ |++|+|++++|+|+|....-..-+.
T Consensus 234 ~~---~~~~~~~~~~~~~~~~-~~v~~~~~-----~~~~~l~aADl~V~~S----Gt~tlEa~a~G~P~Vv~yk~~pl~~ 300 (385)
T TIGR00215 234 NF---KRRLQFEQIKAEYGPD-LQLHLIDG-----DARKAMFAADAALLAS----GTAALEAALIKTPMVVGYRMKPLTF 300 (385)
T ss_pred Cc---hhHHHHHHHHHHhCCC-CcEEEECc-----hHHHHHHhCCEEeecC----CHHHHHHHHcCCCEEEEEcCCHHHH
Confidence 21 2344555555666665 57766543 2234778899999776 7777799999999888643222222
Q ss_pred chhHH-------------HhhhCCccccc--CCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHh
Q 003891 644 VGVSL-------------LTKVGLKHLIA--KNEDEYVQLALQLASDV----TALANLRMSLRDLM 690 (788)
Q Consensus 644 ~~~~~-------------l~~~gl~~~ia--~~~~~y~~~a~~l~~d~----~~~~~~r~~~~~~~ 690 (788)
..+.. ...--.+|++- -+++...+.+.+|..|+ +.++.+++.+++..
T Consensus 301 ~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 366 (385)
T TIGR00215 301 LIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELR 366 (385)
T ss_pred HHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHH
Confidence 22221 11222356663 35888999999999999 99999998887654
|
Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.4e-07 Score=90.72 Aligned_cols=103 Identities=22% Similarity=0.267 Sum_probs=93.0
Q ss_pred HHHHHHHHHH-HHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHH
Q 003891 25 IVLTDLGTSL-KLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCN 97 (788)
Q Consensus 25 ~~l~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~---~~~~~~~ 97 (788)
...+..+..+ +..|+|++|+..|++.++..|+. +.+++.+|.+|+..|++++|+..|+++++..|+ .+++++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3456666665 56799999999999999999997 579999999999999999999999999998776 5789999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCcHH
Q 003891 98 MGVIYKNRGDLESAIACYERCLAVSPNFEI 127 (788)
Q Consensus 98 la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 127 (788)
+|.++..+|++++|...|+++++..|+...
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 999999999999999999999999999764
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.6e-07 Score=95.61 Aligned_cols=122 Identities=23% Similarity=0.229 Sum_probs=111.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 003891 171 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 250 (788)
Q Consensus 171 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 250 (788)
..+-.++...++++.|++.+++..+.+|+ +...++.++...++..+|++.++++++.+|.+...+...+..+...++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 34556667778999999999999988875 566789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 251 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 295 (788)
Q Consensus 251 ~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 295 (788)
++.|++..+++++..|++...|+.|+.+|..+|++++|+..++.+
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999877754
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.3e-07 Score=90.42 Aligned_cols=105 Identities=16% Similarity=0.065 Sum_probs=80.2
Q ss_pred EEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccc
Q 003891 528 TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLM 607 (788)
Q Consensus 528 ~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~ 607 (788)
.+|.++. .|..+.+++++.++.++.|+.+++++|.+. ............+.. ++|.+.+.++..++....+..+
T Consensus 109 ~~g~~~~-~k~~~~~~~a~~~l~~~~~~~~~~i~G~~~----~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~ 182 (229)
T cd01635 109 FVGRLAP-EKGLDDLIEAFALLKERGPDLKLVIAGDGP----EREYLEELLAALLLL-DRVIFLGGLDPEELLALLLAAA 182 (229)
T ss_pred EEEeecc-cCCHHHHHHHHHHHHHhCCCeEEEEEeCCC----ChHHHHHHHHhcCCc-ccEEEeCCCCcHHHHHHHhhcC
Confidence 4555443 599999999999999999999999998763 223333335566776 8999999975444555555669
Q ss_pred cEeecCCCC-CCchhHHHHhhhCCceeecCCC
Q 003891 608 DISLDTFPY-AGTTTTCESLYMGVPCVTMAGS 638 (788)
Q Consensus 608 Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~ 638 (788)
|++|-|+.. +.+++++|||++|+|||+-...
T Consensus 183 di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~ 214 (229)
T cd01635 183 DVFVLPSLREGFGLVVLEAMACGLPVIATDVG 214 (229)
T ss_pred CEEEecccccCcChHHHHHHhCCCCEEEcCCC
Confidence 999999866 6689999999999999985544
|
The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. |
| >KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.4e-07 Score=91.06 Aligned_cols=271 Identities=15% Similarity=0.178 Sum_probs=175.1
Q ss_pred HHHHHHhCCCcEEEeCCCCCCCCcccccccCCCCeE-EecccCCCCCC-------------C------------------
Q 003891 425 VAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQ-VTWIGYPNTTG-------------L------------------ 472 (788)
Q Consensus 425 ~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~Apvq-~~~~g~~~ttg-------------~------------------ 472 (788)
.-+.|-+--+||-||.+|+.- ..++|. |++-+- ++|.-||.-+- +
T Consensus 142 ~~Eai~r~~Pdi~IDtMGY~f--s~p~~r-~l~~~~V~aYvHYP~iS~DML~~l~qrq~s~~l~~~KlaY~rlFa~lY~~ 218 (465)
T KOG1387|consen 142 AFEAIIRFPPDIFIDTMGYPF--SYPIFR-RLRRIPVVAYVHYPTISTDMLKKLFQRQKSGILVWGKLAYWRLFALLYQS 218 (465)
T ss_pred HHHHHHhCCchheEecCCCcc--hhHHHH-HHccCceEEEEecccccHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHh
Confidence 456677888999999999985 456664 244443 45666774321 0
Q ss_pred --CCccEEEecCCCCCcCccCCCccceEEcCCCccccCCCCCCCCCCCCCC-CCCCCeEEEecC--CCCcCCHHHHHHHH
Q 003891 473 --PTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPA-LTNGFITFGSFN--NLAKITPKVLQVWA 547 (788)
Q Consensus 473 --~~~Dy~i~d~~~~p~~~~~~~~e~l~~lp~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~--~~~K~~~~~~~~~~ 547 (788)
...|++++...- ...+--.++.--.|.+.|.|-... ......+ .....++..+.+ |+.|.++ ++++++
T Consensus 219 ~G~~ad~vm~NssW-----T~nHI~qiW~~~~~~iVyPPC~~e-~lks~~~te~~r~~~ll~l~Q~RPEKnH~-~Lql~A 291 (465)
T KOG1387|consen 219 AGSKADIVMTNSSW-----TNNHIKQIWQSNTCSIVYPPCSTE-DLKSKFGTEGERENQLLSLAQFRPEKNHK-ILQLFA 291 (465)
T ss_pred ccccceEEEecchh-----hHHHHHHHhhccceeEEcCCCCHH-HHHHHhcccCCcceEEEEEeecCcccccH-HHHHHH
Confidence 013333332100 011111122222333334332211 1000011 123334455555 7899999 888888
Q ss_pred HHHhHc------CCcEEEEecCCC--CCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCC-CCC
Q 003891 548 RILCAV------PNSRLVVKCKPF--CCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP-YAG 618 (788)
Q Consensus 548 ~il~~~------p~~~l~l~~~~~--~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~-~~g 618 (788)
--+... ++.+|+++|.-. .+..-...|+.+.+.+.|+ +.|.|.-.+| .++....++.|-+-+.+-. ...
T Consensus 292 l~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~-~~v~F~~N~P-y~~lv~lL~~a~iGvh~MwNEHF 369 (465)
T KOG1387|consen 292 LYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIP-KHVQFEKNVP-YEKLVELLGKATIGVHTMWNEHF 369 (465)
T ss_pred HHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCc-cceEEEecCC-HHHHHHHhccceeehhhhhhhhc
Confidence 666655 458899987543 2344557888999999998 7799999988 8999999999999999984 488
Q ss_pred chhHHHHhhhCC-ceeecCCCccCccchhHHHhhhC-CcccccCCHHHHHHHHHHHh-cCHHHHHHHHHHHHHHhhcCCC
Q 003891 619 TTTTCESLYMGV-PCVTMAGSVHAHNVGVSLLTKVG-LKHLIAKNEDEYVQLALQLA-SDVTALANLRMSLRDLMSKSPV 695 (788)
Q Consensus 619 ~~t~~eal~~Gv-Pvvt~~g~~~~~r~~~~~l~~~g-l~~~ia~~~~~y~~~a~~l~-~d~~~~~~~r~~~~~~~~~~~~ 695 (788)
|.+..|+|++|+ ||+--.|...-.=|. .-.| ..++.+.+.+||++..+... .|.+.|..+|...|....+
T Consensus 370 GIsVVEyMAAGlIpi~h~SgGP~lDIV~----~~~G~~tGFla~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~R--- 442 (465)
T KOG1387|consen 370 GISVVEYMAAGLIPIVHNSGGPLLDIVT----PWDGETTGFLAPTDEEYAEAILKIVKLNYDERNMMRRNARKSLAR--- 442 (465)
T ss_pred chhHHHHHhcCceEEEeCCCCCceeeee----ccCCccceeecCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH---
Confidence 999999999995 666544432211111 1123 34688999999999998887 4677799999999987643
Q ss_pred CChHHHHHHHHHHHHHHHH
Q 003891 696 CDGQNFALGLESTYRNMWH 714 (788)
Q Consensus 696 ~~~~~~~~~~e~~~~~~~~ 714 (788)
|+...|-+.++..+..+.+
T Consensus 443 FsE~~F~kd~~~~i~kll~ 461 (465)
T KOG1387|consen 443 FGELKFDKDWENPICKLLE 461 (465)
T ss_pred hhHHHHHHhHhHHHHHhhc
Confidence 7888899998877776654
|
|
| >TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1 | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.2e-07 Score=103.59 Aligned_cols=159 Identities=13% Similarity=0.104 Sum_probs=120.3
Q ss_pred CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCC----------------------------CC
Q 003891 535 LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLE----------------------------SL 586 (788)
Q Consensus 535 ~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~----------------------------~~ 586 (788)
+.|-....++++.+++..+|++.|.+.|.+.. ......+++..++.+.. .+
T Consensus 331 ~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~-~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (519)
T TIGR03713 331 SDEELQQILQQLLQYILKNPDYELKILTYNND-NDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPILQTDEEQKEKE 409 (519)
T ss_pred ChHHHHHHHHHHHHHHhhCCCeEEEEEEecCc-hhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhcccchhhccccc
Confidence 58999999999999999999999999886622 23445565555665554 16
Q ss_pred cEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHH
Q 003891 587 RVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYV 666 (788)
Q Consensus 587 rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~ 666 (788)
||.|.+... ..+....|+.+.|++|++...|-.|.+||+..|||+|-. | .+-+..-|..+.|..|.+++.
T Consensus 410 ~v~f~gy~~-e~dl~~~~~~arl~id~s~~eg~~~~ieAiS~GiPqIny-g--------~~~~V~d~~NG~li~d~~~l~ 479 (519)
T TIGR03713 410 RIAFTTLTN-EEDLISALDKLRLIIDLSKEPDLYTQISGISAGIPQINK-V--------ETDYVEHNKNGYIIDDISELL 479 (519)
T ss_pred EEEEEecCC-HHHHHHHHhhheEEEECCCCCChHHHHHHHHcCCCeeec-C--------CceeeEcCCCcEEeCCHHHHH
Confidence 999999755 458889999999999999885544999999999999921 1 112233377888889999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 003891 667 QLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLES 707 (788)
Q Consensus 667 ~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~ 707 (788)
+.++.+..|+...+++....-+.+. -|+.+....++++
T Consensus 480 ~al~~~L~~~~~wn~~~~~sy~~~~---~yS~~~i~~kW~~ 517 (519)
T TIGR03713 480 KALDYYLDNLKNWNYSLAYSIKLID---DYSSENIIERLNE 517 (519)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHH---HhhHHHHHHHHHh
Confidence 9999999999888887777665542 3566655444443
|
This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.4e-05 Score=76.49 Aligned_cols=188 Identities=21% Similarity=0.177 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHH
Q 003891 23 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYEKAALERPMYA---EAYC 96 (788)
Q Consensus 23 la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~---~~~~ 96 (788)
-+..++..|...++.|++++|+..|+.+....|.. ..+...++.++++.+++++|+...++-+.+.|.++ .+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 45668999999999999999999999999988764 67899999999999999999999999999988764 5677
Q ss_pred HHHHHHHHCC--------CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHH
Q 003891 97 NMGVIYKNRG--------DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 168 (788)
Q Consensus 97 ~la~~~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 168 (788)
..|.++...= -..+|+..|++.++..|+..-+..... =+..++..+ ..
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~------------------~i~~~~d~L------A~ 168 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKA------------------RIVKLNDAL------AG 168 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHH------------------HHHHHHHHH------HH
Confidence 8888876542 246788889999999998652211100 011111111 11
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 234 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 234 (788)
--..+|..|.+.|.+..|+..++..++..|+. .+++..+..+|..+|-.++|.+.-.-.-...|++
T Consensus 169 ~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 169 HEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 12344666666666666666666666654443 4556666666666666666665443333333443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.9e-05 Score=88.01 Aligned_cols=131 Identities=18% Similarity=0.224 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCCC--HH------------HHHHHHHHHHHcC-CHHHHHHH
Q 003891 165 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHF------NPHC--AE------------ACNNLGVIYKDRD-NLDKAVEC 223 (788)
Q Consensus 165 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~--~~------------~~~~la~~~~~~g-~~~eA~~~ 223 (788)
.+..+-+.+|..|...|+..+|+..|.++-.. ..++ .+ -....+..|...| +...|..+
T Consensus 965 gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmL 1044 (1416)
T KOG3617|consen 965 GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVML 1044 (1416)
T ss_pred ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHH
Confidence 34456677777777777777777777665432 1110 01 1111233333333 44445444
Q ss_pred HHHH------Hh-----------------hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHh---------
Q 003891 224 YQMA------LS-----------------IKP-NFSQSLNNLGVVYTVQGKMDAAAEMIEKA------IAA--------- 264 (788)
Q Consensus 224 ~~~a------l~-----------------~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~ka------l~~--------- 264 (788)
|.+| ++ +++ .++..+..-+..+....+|++|...+-.+ +.+
T Consensus 1045 YHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vt 1124 (1416)
T KOG3617|consen 1045 YHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVT 1124 (1416)
T ss_pred HHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchh
Confidence 4332 11 122 45667777778888888888887765443 332
Q ss_pred -------CCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 265 -------NPT---------YAEAYNNLGVLYRDAGSISLAIDAYEQC 295 (788)
Q Consensus 265 -------~p~---------~~~~~~~la~~~~~~g~~~eA~~~~~~a 295 (788)
.|. ...++..+|.++.++|.|..|-+-|.+|
T Consensus 1125 ee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1125 EEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 111 0346677888888888888887777665
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.2e-05 Score=77.36 Aligned_cols=234 Identities=17% Similarity=0.084 Sum_probs=168.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhh
Q 003891 65 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 144 (788)
Q Consensus 65 g~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~ 144 (788)
.+-++..|+|..++..-++.-... ...+....+.+.|..+|++..-+.-....- .|. ..+...++....
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~--~~~--------lqAvr~~a~~~~ 83 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK--ATP--------LQAVRLLAEYLE 83 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc--CCh--------HHHHHHHHHHhh
Confidence 345667899999988887765443 667788888899999998876554433321 111 112223333333
Q ss_pred hcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 145 LEGDINQGVAYYKKALYYN--WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 222 (788)
Q Consensus 145 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 222 (788)
..++.++-+.-..+.+... ..+.-....-+.++...+++++|++..... .+.++...--.++.+..+.+-|.+
T Consensus 84 ~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~ 158 (299)
T KOG3081|consen 84 LESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEK 158 (299)
T ss_pred CcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445454444444433322 223345566688999999999999988763 345666666788889999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 223 CYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 223 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
.++++.+++.+ ..+..||..+.+ .+++.+|.-+|+..-+..|..+.....++.+...+|++++|...++.++..
T Consensus 159 ~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 159 ELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999887654 445555555543 357899999999999988888999999999999999999999999999999
Q ss_pred CCCChhhHHhHHHHhhhc
Q 003891 299 DPDSRNAGQNRLLAMNYI 316 (788)
Q Consensus 299 ~p~~~~a~~~~lla~~~l 316 (788)
++++++...|+..+..+.
T Consensus 237 d~~dpetL~Nliv~a~~~ 254 (299)
T KOG3081|consen 237 DAKDPETLANLIVLALHL 254 (299)
T ss_pred cCCCHHHHHHHHHHHHHh
Confidence 999999999976655443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.5e-06 Score=92.03 Aligned_cols=117 Identities=17% Similarity=0.143 Sum_probs=108.2
Q ss_pred hhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003891 142 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 221 (788)
Q Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 221 (788)
.....+++++|++.+++..+.+|+ +...++.++...++..+|++.+.++++.+|.+...+...+..+...++++.|+
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL 254 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELAL 254 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 344567999999999999988865 66778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 222 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 261 (788)
Q Consensus 222 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~ka 261 (788)
++.+++.+..|++...|..|+.+|...|++++|+..++.+
T Consensus 255 ~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 255 EIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9999999999999999999999999999999999887755
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00039 Score=79.23 Aligned_cols=226 Identities=13% Similarity=0.030 Sum_probs=164.2
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 003891 35 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 114 (788)
Q Consensus 35 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 114 (788)
...+++.+|.+...+.++..|+...+....|.++.++|+.++|..+++..-...+++...+..+-.+|..++++++|..+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 45689999999999999999999999999999999999999999888888778888889999999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCChH---------
Q 003891 115 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA-MYNLGVAYGEMLKFD--------- 184 (788)
Q Consensus 115 ~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~--------- 184 (788)
|++++..+|+ .+....+-.++.. .++|.+-.+.--+..+..|+++.. |..+..+.......+
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR-------~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAYVR-------EKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 9999999999 5555444444444 335555444444444567776654 333344443333333
Q ss_pred HHHHHHHHHHhcC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 185 MAIVFYELAFHFN-PHCA-EACNNLGVIYKDRDNLDKAVECYQMAL--SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 260 (788)
Q Consensus 185 ~A~~~~~~al~~~-p~~~-~~~~~la~~~~~~g~~~eA~~~~~~al--~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~k 260 (788)
-|....++.++.. +-.. .=....-.++..+|++++|.+.+..-+ ...+.+..........+...+++.+-.+...+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3445555555554 2211 112223356677899999999984332 33344455555667778889999999999999
Q ss_pred HHHhCCCC
Q 003891 261 AIAANPTY 268 (788)
Q Consensus 261 al~~~p~~ 268 (788)
++..++++
T Consensus 252 Ll~k~~Dd 259 (932)
T KOG2053|consen 252 LLEKGNDD 259 (932)
T ss_pred HHHhCCcc
Confidence 99998887
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.9e-06 Score=74.82 Aligned_cols=93 Identities=20% Similarity=0.186 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHH
Q 003891 170 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN---FSQSLNNLGV 243 (788)
Q Consensus 170 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~la~ 243 (788)
.+.+|.++-..|+.++|+.+|++++...... ..++..+|..+...|++++|+..+++++...|+ +......++.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 3444455555555555555555554432221 334444555555555555555555555544444 3344444444
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 003891 244 VYTVQGKMDAAAEMIEKAI 262 (788)
Q Consensus 244 ~~~~~g~~~eA~~~l~kal 262 (788)
++...|++++|++.+-.++
T Consensus 84 ~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 5555555555555444443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.1e-05 Score=86.33 Aligned_cols=173 Identities=18% Similarity=0.200 Sum_probs=119.3
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 003891 34 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 113 (788)
Q Consensus 34 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~ 113 (788)
....|-.++|..+|.+.-.. -.+-..|...|.+++|.+..+.--.+ ..-..|++.+..+...++.+.|++
T Consensus 810 AieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHHHHH
Confidence 34557788899888886542 34566788889999988876543221 234678999999999999999999
Q ss_pred HHHHHH----------hhCCCcHHHHHHH---HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003891 114 CYERCL----------AVSPNFEIAKNNM---AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 180 (788)
Q Consensus 114 ~~~~al----------~~~p~~~~~~~~l---a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 180 (788)
+|+++- .-+|...+.+.+. -..|...|......|+.+.|+.+|..+- -|+.+..+..-+
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~--------D~fs~VrI~C~q 951 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK--------DYFSMVRIKCIQ 951 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh--------hhhhheeeEeec
Confidence 999862 2223222111111 1234445555666777777777777653 355666677777
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003891 181 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 229 (788)
Q Consensus 181 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 229 (788)
|+.++|-.+-++ ..+..+.+.+|..|...|+..+|+..|.+|-.
T Consensus 952 Gk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 952 GKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred cCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 777777665554 35677889999999999999999999887643
|
|
| >KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.1e-06 Score=92.19 Aligned_cols=181 Identities=18% Similarity=0.128 Sum_probs=131.9
Q ss_pred CCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHc-----CCcEEEEecC-CCC-----CHHHHHHHHHHHHHcCCCCC
Q 003891 520 PALTNGFITFGSFNNL--AKITPKVLQVWARILCAV-----PNSRLVVKCK-PFC-----CDSVRHRFLSTLEQLGLESL 586 (788)
Q Consensus 520 ~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~-----p~~~l~l~~~-~~~-----~~~~~~~l~~~~~~~gi~~~ 586 (788)
.+..+..+.|.++|+. -|...-.+..+.+..... +.-++.+.|. |.. .-.....+++.+++.++..+
T Consensus 267 ~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~ 346 (495)
T KOG0853|consen 267 RGVSGIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQ 346 (495)
T ss_pred eeecccceEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCc
Confidence 3556667789999965 677767777777777766 4556666652 222 11345678889999999768
Q ss_pred cEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecC-CCccCccchhHHHhhhCCccc-ccCCHH
Q 003891 587 RVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMA-GSVHAHNVGVSLLTKVGLKHL-IAKNED 663 (788)
Q Consensus 587 rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~-g~~~~~r~~~~~l~~~gl~~~-ia~~~~ 663 (788)
.+.|++... +.+-..++..+...+-+... ..|.|++|||++|+|||+.. |.+.-.-+. |..+| +..+.+
T Consensus 347 ~v~~~~s~~-~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~-------~~tG~l~dp~~e 418 (495)
T KOG0853|consen 347 FVWFLPSTT-RVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAEIVVH-------GVTGLLIDPGQE 418 (495)
T ss_pred eEEEecCCc-hHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecCCCceEEEEc-------CCcceeeCCchH
Confidence 899988876 45556677778888888766 88999999999999999654 433222111 44343 334555
Q ss_pred ---HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 664 ---EYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 664 ---~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
.+.+..+++.+||+.+.+++++.++++.+. |++..|..++.+...
T Consensus 419 ~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV~e~--fs~~~~~~ri~~~~~ 466 (495)
T KOG0853|consen 419 AVAELADALLKLRRDPELWARMGKNGLKRVKEM--FSWQHYSERIASVLG 466 (495)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHhH
Confidence 599999999999999999999999999765 778777777777665
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.8e-06 Score=80.91 Aligned_cols=104 Identities=27% Similarity=0.321 Sum_probs=87.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003891 205 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ-----SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 279 (788)
Q Consensus 205 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~ 279 (788)
-.-|.-++..|+|++|..-|..|+...|..+. .|.+.|.++.+++.++.|++...++++++|.+..++...|.+|
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAY 178 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHH
Confidence 34466677788888888888888888776543 6778888899999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCChhhHHh
Q 003891 280 RDAGSISLAIDAYEQCLKIDPDSRNAGQN 308 (788)
Q Consensus 280 ~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 308 (788)
.++..+++|++-|++.++++|....++..
T Consensus 179 ek~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 99999999999999999999998877654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00078 Score=69.86 Aligned_cols=295 Identities=18% Similarity=0.078 Sum_probs=203.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Q 003891 30 LGTSLKLAGNTQDGIQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPM-YAEAYCNMGVIYKNRG 106 (788)
Q Consensus 30 lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~-~~~~~~~la~~~~~~g 106 (788)
.|.+....|+-..|.+.-.++-++-..+ +-++..-++.-.-.|+++.|.+-|+.++. +|+ ..-.+..|-.--...|
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~G 168 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLG 168 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcc
Confidence 3555666788889999888877554443 44556667788889999999999998875 333 2222333333445689
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhC---CCCHH---HHHHHHHHH-HH
Q 003891 107 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN---WHYAD---AMYNLGVAY-GE 179 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~---~~~~la~~~-~~ 179 (788)
..+.|+.|-+++-...|....++...-.. ....|+++.|+++.+...... ++-.+ +...-+... ..
T Consensus 169 areaAr~yAe~Aa~~Ap~l~WA~~AtLe~-------r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 169 AREAARHYAERAAEKAPQLPWAARATLEA-------RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred cHHHHHHHHHHHHhhccCCchHHHHHHHH-------HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999987554433222 334789999999998766432 22211 111112221 23
Q ss_pred cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 180 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 259 (788)
Q Consensus 180 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~ 259 (788)
.-+...|...-.++.++.|+...+-..-+..+++.|+..++-++++.+.+..|.- + ++.+|....--+.++.-++
T Consensus 242 dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP-~----ia~lY~~ar~gdta~dRlk 316 (531)
T COG3898 242 DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP-D----IALLYVRARSGDTALDRLK 316 (531)
T ss_pred cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh-H----HHHHHHHhcCCCcHHHHHH
Confidence 3468889999999999999999999999999999999999999999999998863 2 3334444333334444444
Q ss_pred ---HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhc-cCCCchHHHHHHHHHHHHH
Q 003891 260 ---KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYI-NEGHDDKLFEAHRDWGKRF 335 (788)
Q Consensus 260 ---kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l-~~g~~~~~~~~~~~~~~~~ 335 (788)
+...+.|++.+..+..+..-..-|++..|...-+.+....|... ..++++..-- +.|+..+ .|.|..+-
T Consensus 317 Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres---~~lLlAdIeeAetGDqg~----vR~wlAqa 389 (531)
T COG3898 317 RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES---AYLLLADIEEAETGDQGK----VRQWLAQA 389 (531)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh---HHHHHHHHHhhccCchHH----HHHHHHHH
Confidence 44556899999999999999999999999999999999888632 2334443322 3355544 34555442
Q ss_pred hhhccCCCCC
Q 003891 336 MRLYSQYTSW 345 (788)
Q Consensus 336 ~~~~~~~~~~ 345 (788)
.+ .|+.|.|
T Consensus 390 v~-APrdPaW 398 (531)
T COG3898 390 VK-APRDPAW 398 (531)
T ss_pred hc-CCCCCcc
Confidence 21 3444555
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.3e-06 Score=78.49 Aligned_cols=116 Identities=25% Similarity=0.274 Sum_probs=102.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003891 16 YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNLGVVYSELMQYDTALGCYEKAALERPM 90 (788)
Q Consensus 16 ~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~ 90 (788)
..+.....+.-+..-|.-++..|+|++|...|..+|...|.. .-.|.+.|.++++++.++.|+..+.++++++|.
T Consensus 87 ek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt 166 (271)
T KOG4234|consen 87 EKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT 166 (271)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch
Confidence 334444556667788999999999999999999999999875 346788999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 003891 91 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 131 (788)
Q Consensus 91 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 131 (788)
+..++...|.+|.++..+++|++-|++.++.+|....+...
T Consensus 167 y~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 167 YEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 99999999999999999999999999999999987655433
|
|
| >COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.1e-05 Score=86.70 Aligned_cols=176 Identities=15% Similarity=0.110 Sum_probs=127.1
Q ss_pred eEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc
Q 003891 527 ITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 604 (788)
Q Consensus 527 ~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~ 604 (788)
+++.++++. .|..+.+++++..+....|+..++++|.+... ...+...+...+.. +.+.|.|.++ ..+....+
T Consensus 200 ~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~-~~v~~~g~~~-~~~~~~~~ 274 (381)
T COG0438 200 FVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPER---REELEKLAKKLGLE-DNVKFLGYVP-DEELAELL 274 (381)
T ss_pred eEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCcc---HHHHHHHHHHhCCC-CcEEEecccC-HHHHHHHH
Confidence 456666654 68889999999999888888888888876322 34555567777775 7899999877 45677788
Q ss_pred ccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC-CHHHHHHHHHHHhcCHHHHHHH
Q 003891 605 SLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK-NEDEYVQLALQLASDVTALANL 682 (788)
Q Consensus 605 ~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~-~~~~y~~~a~~l~~d~~~~~~~ 682 (788)
..+|+++-|+.+ +.|.+++|||++|+|||+........ ++...+..-++.. +.++++.....+..+.+.++.+
T Consensus 275 ~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~~~~e-----~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 349 (381)
T COG0438 275 ASADVFVLPSLSEGFGLVLLEAMAAGTPVIASDVGGIPE-----VVEDGETGLLVPPGDVEELADALEQLLEDPELREEL 349 (381)
T ss_pred HhCCEEEeccccccchHHHHHHHhcCCcEEECCCCChHH-----HhcCCCceEecCCCCHHHHHHHHHHHhcCHHHHHHH
Confidence 889999999876 67888999999999999843322211 2222210112332 5899999999999999777777
Q ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 003891 683 RMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 714 (788)
Q Consensus 683 r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 714 (788)
....++... ..|+++.++..+++.|.....
T Consensus 350 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 379 (381)
T COG0438 350 GEAARERVE--EEFSWERIAEQLLELYEELLA 379 (381)
T ss_pred HHHHHHHHH--HhcCHHHHHHHHHHHHHHHHh
Confidence 765555443 458999999888888877654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00056 Score=78.01 Aligned_cols=285 Identities=14% Similarity=0.039 Sum_probs=186.6
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|++...+.++..|+..-+ ....|..+.+.|+.++|..+++..-...+++...+-.+-.+|..++++++|..+|
T Consensus 28 al~~~~kllkk~Pn~~~a-------~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 28 ALAKLGKLLKKHPNALYA-------KVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHCCCcHHH-------HHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 677788889999987666 3445666778899999998888877778888889999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhc----CCHHHHHHHHH
Q 003891 82 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE----GDINQGVAYYK 157 (788)
Q Consensus 82 ~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~----g~~~~A~~~~~ 157 (788)
++++..+|. .+.++.+-.+|.+.++|.+-.+.--+..+..|+.+........ +...+.--... --..-|...++
T Consensus 101 e~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~S-lilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 101 ERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVIS-LILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHH-HHHHhccCCcccccchhHHHHHHHHH
Confidence 999999999 8888888899999999888777666666777876633222211 11111100000 11234555666
Q ss_pred HHHHhC-CCCHH-HHHHHHHHHHHcCChHHHHHHHHHH-H-hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 158 KALYYN-WHYAD-AMYNLGVAYGEMLKFDMAIVFYELA-F-HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 233 (788)
Q Consensus 158 ~al~~~-p~~~~-~~~~la~~~~~~g~~~~A~~~~~~a-l-~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 233 (788)
+.++.. +-... -....-.++..+|++++|.+.+..- . ...+.+...-......+...+++.+-.+...+++...++
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 666655 22211 1222335667889999999998433 2 334445555566778888899999999999999999888
Q ss_pred CHHHHHH-HH------------HHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 234 FSQSLNN-LG------------VVYTVQGKMDAAAEMIEKAIAANPTYA-EAYNNLGVLYRDAGSISLAIDAYEQC 295 (788)
Q Consensus 234 ~~~~~~~-la------------~~~~~~g~~~eA~~~l~kal~~~p~~~-~~~~~la~~~~~~g~~~eA~~~~~~a 295 (788)
+...+.. .- ..+...+..+..++..++.+.-+...+ -+++.+-.-+...|+.+++.-.|-+-
T Consensus 259 dy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k 334 (932)
T KOG2053|consen 259 DYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK 334 (932)
T ss_pred chHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH
Confidence 7222111 11 112222334444444455444422222 23334444445668888876665443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.8e-06 Score=73.75 Aligned_cols=96 Identities=20% Similarity=0.191 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 003891 202 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT---YAEAYNNL 275 (788)
Q Consensus 202 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~---~~~~~~~l 275 (788)
.+++.+|.++-..|+.++|+.+|++++...... ..++..+|..+...|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 467899999999999999999999999975444 458999999999999999999999999999888 77888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 003891 276 GVLYRDAGSISLAIDAYEQCLK 297 (788)
Q Consensus 276 a~~~~~~g~~~eA~~~~~~al~ 297 (788)
+.++...|+.++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988775
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=5e-05 Score=75.33 Aligned_cols=192 Identities=19% Similarity=0.188 Sum_probs=142.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 003891 57 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 133 (788)
Q Consensus 57 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 133 (788)
.+..++.-|...++.|++++|+..|+++....|.. ..+...++.++++.+++++|+...++.+.+.|.++.+-
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d---- 108 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD---- 108 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh----
Confidence 47789999999999999999999999999987764 67899999999999999999999999999999987542
Q ss_pred HHHHHhhhhh--------hhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHH
Q 003891 134 IALTDLGTKV--------KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 205 (788)
Q Consensus 134 ~~l~~lg~~~--------~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 205 (788)
.+++..|..+ ..+.-..+|+..++..+...|+..-+-.....+ ..++.. ...--.
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i-----------~~~~d~------LA~~Em 171 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI-----------VKLNDA------LAGHEM 171 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH-----------HHHHHH------HHHHHH
Confidence 2233333222 222335677788888888888764322111111 111111 123335
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 003891 206 NLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 269 (788)
Q Consensus 206 ~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~ 269 (788)
.+|..|.+.|.+..|+..++++++..|+. .+++..+..+|..+|-.++|.+.-+-.-...|++.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 67899999999999999999999987665 45888899999999999999887655555556654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.5e-06 Score=82.33 Aligned_cols=103 Identities=22% Similarity=0.313 Sum_probs=95.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHH
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNMGV 100 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~---~~~~~~~la~ 100 (788)
+++.+..++..|+|.+|...|.+-++..|+. +.++|.||.+++.+|+|++|...|..+.+..|+ -+++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7888999999999999999999999999885 789999999999999999999999999998776 4789999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCcHHHH
Q 003891 101 IYKNRGDLESAIACYERCLAVSPNFEIAK 129 (788)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 129 (788)
+...+|+.++|...|+++++..|+...+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 99999999999999999999999987543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.2e-07 Score=71.17 Aligned_cols=66 Identities=23% Similarity=0.206 Sum_probs=41.8
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003891 35 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 100 (788)
Q Consensus 35 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~ 100 (788)
...|++++|++.|+++++.+|++..+++.+|.+|...|++++|...+++++..+|+++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 345666666666666666666666666666666666666666666666666666666555555443
|
... |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.7e-05 Score=74.16 Aligned_cols=106 Identities=15% Similarity=0.211 Sum_probs=67.1
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HH
Q 003891 206 NLGVIYKDR-DNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA-------EA 271 (788)
Q Consensus 206 ~la~~~~~~-g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~-------~~ 271 (788)
.+|.+|..- .++++|+.+|+++-+..... ...+...+..-...++|.+|+..|++.....-++. ..
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 344444432 55666666666655443221 12444555556667778888888877766544432 34
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHH
Q 003891 272 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 311 (788)
Q Consensus 272 ~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~ll 311 (788)
++.-|.|+....+.-.+...+++..+++|...+.+-..++
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckfl 237 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFL 237 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHH
Confidence 5566777777788888888888888899988777665444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.7e-06 Score=82.74 Aligned_cols=104 Identities=21% Similarity=0.249 Sum_probs=79.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 003891 204 CNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGV 277 (788)
Q Consensus 204 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~---~~~~~~la~ 277 (788)
.++.|.-++..|+|.+|...|..-++..|+. +++++.||.+++.+|++++|...|..+.+..|+. +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5666667777777777777777777777765 5577778888888888888888888777776655 677888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChhhHH
Q 003891 278 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 307 (788)
Q Consensus 278 ~~~~~g~~~eA~~~~~~al~l~p~~~~a~~ 307 (788)
+...+|+.++|...|+++++..|+...+..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 888888888888888888888887766543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.39 E-value=1e-06 Score=70.64 Aligned_cols=54 Identities=41% Similarity=0.514 Sum_probs=23.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 248 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 248 ~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
.|++++|++.|++++..+|++..+++.+|.+|.+.|++++|.+.+++++..+|+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 344444444444444444444444444444444444444444444444444444
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2e-06 Score=91.97 Aligned_cols=68 Identities=24% Similarity=0.245 Sum_probs=49.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 231 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA---YNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 231 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~---~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
+|+++..++++|.+|..+|+|++|+..|+++++++|++.++ |+++|.+|..+|++++|++++++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46667777777777777777777777777777777777643 777777777777777777777777776
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.7e-05 Score=70.35 Aligned_cols=148 Identities=18% Similarity=0.156 Sum_probs=119.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 148 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH-FNPHCAEACNNLGVIYKDRDNLDKAVECYQM 226 (788)
Q Consensus 148 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 226 (788)
+.+....-..+.+...|... -.+.+|..+.+.|++.+|...|++++. +.-+++..+..++...+..+++.+|...+++
T Consensus 71 dP~R~~Rea~~~~~~ApTvq-nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 71 DPERHLREATEELAIAPTVQ-NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred ChhHHHHHHHHHHhhchhHH-HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 44444455555555555433 357789999999999999999999886 4667888999999999999999999999999
Q ss_pred HHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003891 227 ALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 297 (788)
Q Consensus 227 al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 297 (788)
..+.+|. .++....+|.+|..+|++.+|...|+.++...|+ +.+....+..+.++|+..+|..-+....+
T Consensus 150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 9988875 4667888899999999999999999999998886 67777888899999988888776665543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.29 E-value=4e-06 Score=68.19 Aligned_cols=63 Identities=24% Similarity=0.399 Sum_probs=37.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhh
Q 003891 243 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 305 (788)
Q Consensus 243 ~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a 305 (788)
.+|...+++++|++++++++.++|+++..+..+|.++..+|++++|.+.++++++..|++..+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 445555566666666666666666655566666666666666666666666666666655544
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00016 Score=69.98 Aligned_cols=182 Identities=16% Similarity=0.205 Sum_probs=108.2
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC--CCHHHHHHHHHHHHHCCCHHH
Q 003891 37 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE----RP--MYAEAYCNMGVIYKNRGDLES 110 (788)
Q Consensus 37 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~----~p--~~~~~~~~la~~~~~~g~~~~ 110 (788)
.+++++|.++|.++ |+.|...++++.|=..|.++-+. +. +.+..|...+.+|.+. +.++
T Consensus 27 ~~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~e 91 (288)
T KOG1586|consen 27 SNKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEE 91 (288)
T ss_pred CcchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHH
Confidence 35788888888776 34455555666666666665432 11 2345566666666555 8999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhc-CCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCh
Q 003891 111 AIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE-GDINQGVAYYKKALYYNWHYA------DAMYNLGVAYGEMLKF 183 (788)
Q Consensus 111 A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~ 183 (788)
|..++++++++..+... ...-+..+..+|.+|... .++++|+.+|+++-+...... ..+...+..-...++|
T Consensus 92 Av~cL~~aieIyt~~Gr-f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY 170 (288)
T KOG1586|consen 92 AVNCLEKAIEIYTDMGR-FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQY 170 (288)
T ss_pred HHHHHHHHHHHHHhhhH-HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999887655432 112244455666666655 778888888888766543321 2344555666666777
Q ss_pred HHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003891 184 DMAIVFYELAFHFNPHCA-------EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 234 (788)
Q Consensus 184 ~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 234 (788)
.+|+..|++.....-++. ..++.-|.+++-..+.-.+...+++..+++|..
T Consensus 171 ~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 171 SKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 777777777665433332 122334445555455555555555555555554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.5e-06 Score=67.88 Aligned_cols=65 Identities=18% Similarity=0.194 Sum_probs=36.5
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003891 33 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 97 (788)
Q Consensus 33 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~ 97 (788)
++...+++++|+++++++++.+|+++..+..+|.++..+|++++|...++++++..|++..+...
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555444433
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00053 Score=67.42 Aligned_cols=227 Identities=13% Similarity=0.121 Sum_probs=166.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------H-HHHHHHHHHHHHCCCHHHHHHHHHH
Q 003891 57 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY------------------A-EAYCNMGVIYKNRGDLESAIACYER 117 (788)
Q Consensus 57 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~------------------~-~~~~~la~~~~~~g~~~~A~~~~~~ 117 (788)
....|...-.++.++..+++|..-++..-+.+..+ + ......|.+....|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 34556666667777778888877666554432111 1 1223345666667777766655554
Q ss_pred HHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 003891 118 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 197 (788)
Q Consensus 118 al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 197 (788)
....-.+ +-.........+..++.+++-+ ..+.+.+..++...|+|.-.+..+.+.++.+
T Consensus 148 L~~~V~~--------------ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~ 207 (366)
T KOG2796|consen 148 LKTVVSK--------------ILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYY 207 (366)
T ss_pred HHHHHHH--------------HHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhC
Confidence 4322110 1111111223355666666654 3567888899999999999999999999987
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 003891 198 -PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 270 (788)
Q Consensus 198 -p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~ 270 (788)
|..+.....+|.+..+.|+.+.|..+|++.-+.. .....+..+.+.+|.-.+++.+|...+.+++..+|.++.
T Consensus 208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~ 287 (366)
T KOG2796|consen 208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV 287 (366)
T ss_pred CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence 5678888999999999999999999999665432 233446778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 003891 271 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 303 (788)
Q Consensus 271 ~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~ 303 (788)
+..+.|.|+.-.|+..+|++.++.++++.|...
T Consensus 288 a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 288 ANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 999999999999999999999999999999754
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00011 Score=71.45 Aligned_cols=199 Identities=23% Similarity=0.199 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003891 93 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 172 (788)
Q Consensus 93 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 172 (788)
..|..-+.+|...+++++|..++.++.+-..++. .++.-+..+...+........+.++..+++++..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnr-slfhAAKayEqaamLake~~klsEvvdl~eKAs~----------- 99 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR-SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASE----------- 99 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------
Confidence 3455556677777778888887777776655544 3444566666666666666777777777777753
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHH
Q 003891 173 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYT 246 (788)
Q Consensus 173 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~ 246 (788)
.|.+.|..+.|-..++++-+. .+..+.++|+.+|++++.+-... .+.+...++++.
T Consensus 100 ---lY~E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV 161 (308)
T KOG1585|consen 100 ---LYVECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV 161 (308)
T ss_pred ---HHHHhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence 455556666655555555332 23345566666666665542221 224445566677
Q ss_pred HcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCChhhHHhHHHHhhhc
Q 003891 247 VQGKMDAAAEMIEKAIAA------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI----DPDSRNAGQNRLLAMNYI 316 (788)
Q Consensus 247 ~~g~~~eA~~~l~kal~~------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l----~p~~~~a~~~~lla~~~l 316 (788)
+..++++|-..+.+-... .++-...+.....+|.-..+|..|..+|+...++ .|++..+..+++-+ .
T Consensus 162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a---y 238 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA---Y 238 (308)
T ss_pred hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH---h
Confidence 777777776666554332 2333344555556666666788888887776654 33334444443322 3
Q ss_pred cCCCchHH
Q 003891 317 NEGHDDKL 324 (788)
Q Consensus 317 ~~g~~~~~ 324 (788)
..|+.++.
T Consensus 239 d~gD~E~~ 246 (308)
T KOG1585|consen 239 DEGDIEEI 246 (308)
T ss_pred ccCCHHHH
Confidence 55665544
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0019 Score=68.90 Aligned_cols=301 Identities=17% Similarity=0.110 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCC---HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC---CC----
Q 003891 24 AIVLTDLGTSLKLAG--NTQDGIQKYYEALKIDPHY---APAYYNLGVVY-SELMQYDTALGCYEKAALER---PM---- 90 (788)
Q Consensus 24 a~~l~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~-~~~g~~~~A~~~~~kal~~~---p~---- 90 (788)
+..+..+++.+...| +..+++++++..+...|.. +.....+|.++ ...++.+.|...++++..+. |.
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 455777788888888 8899999999998887763 55677788665 46789999999999997653 22
Q ss_pred CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh-------
Q 003891 91 YAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY------- 162 (788)
Q Consensus 91 ~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~------- 162 (788)
..+++..++.+|.... .+..|...+.+++++..+.+.. -...++++++++.-..++..|++.+.-..+.
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~w---sckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ 163 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYW---SCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFP 163 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchh---hHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhH
Confidence 2457788899998877 7889999999999998887722 2456677787877788888887764322111
Q ss_pred ----------------CCCCHHHH---HHHHH-------------------------HHHHcCChHHHHHHHHHH---Hh
Q 003891 163 ----------------NWHYADAM---YNLGV-------------------------AYGEMLKFDMAIVFYELA---FH 195 (788)
Q Consensus 163 ----------------~p~~~~~~---~~la~-------------------------~~~~~g~~~~A~~~~~~a---l~ 195 (788)
.++..++. ...+. .|...|+...+...+++. +.
T Consensus 164 ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siq 243 (629)
T KOG2300|consen 164 YLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQ 243 (629)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHh
Confidence 11111110 00000 012334444433333322 21
Q ss_pred c-CCC------------CH-----------HHHHHH--HHHHHHcCCHHHHHHHHHHHHhhCCC------CHH-------
Q 003891 196 F-NPH------------CA-----------EACNNL--GVIYKDRDNLDKAVECYQMALSIKPN------FSQ------- 236 (788)
Q Consensus 196 ~-~p~------------~~-----------~~~~~l--a~~~~~~g~~~eA~~~~~~al~~~p~------~~~------- 236 (788)
. .+. .+ .++..+ -.--...|-+++|.++-++++..... ...
T Consensus 244 tist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km 323 (629)
T KOG2300|consen 244 TISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKM 323 (629)
T ss_pred ccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 1 110 00 011111 11112346678888888887765211 111
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCChh
Q 003891 237 -SLNNLGVVYTVQGKMDAAAEMIEKAIAA---NPT-------YAEAYNNLGVLYRDAGSISLAIDAYEQCLKI-DPDSRN 304 (788)
Q Consensus 237 -~~~~la~~~~~~g~~~eA~~~l~kal~~---~p~-------~~~~~~~la~~~~~~g~~~eA~~~~~~al~l-~p~~~~ 304 (788)
.+-.+..+-.-.|++.+|++....+.+. .|. .+.++..+|......+.++.|...|..|.++ ...+..
T Consensus 324 ~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~ 403 (629)
T KOG2300|consen 324 ILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQ 403 (629)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHH
Confidence 3345566667789999999988877765 343 2567778888888899999999999999876 344567
Q ss_pred hHHhHHHHhhhccCCCchHHHHH
Q 003891 305 AGQNRLLAMNYINEGHDDKLFEA 327 (788)
Q Consensus 305 a~~~~lla~~~l~~g~~~~~~~~ 327 (788)
+..+.-++..|+..++.+...+.
T Consensus 404 a~~nlnlAi~YL~~~~~ed~y~~ 426 (629)
T KOG2300|consen 404 AFCNLNLAISYLRIGDAEDLYKA 426 (629)
T ss_pred HHHHHhHHHHHHHhccHHHHHHH
Confidence 77788889999998887765543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.4e-05 Score=70.00 Aligned_cols=105 Identities=21% Similarity=0.234 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH
Q 003891 202 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA---EAYNNL 275 (788)
Q Consensus 202 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~---~~~~~l 275 (788)
..++.-|...++.|+|++|++.|+......|.. ..+...++.+|++.+++++|+..+++.++++|+++ .+++..
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 344444555555555555555555555544432 33555555555555555555555555555555442 345555
Q ss_pred HHHHHHcCC---------------HHHHHHHHHHHHhhCCCChhhH
Q 003891 276 GVLYRDAGS---------------ISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 276 a~~~~~~g~---------------~~eA~~~~~~al~l~p~~~~a~ 306 (788)
|.++..+.. ..+|...|++.++..|++.-+.
T Consensus 91 gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 91 GLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred HHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 555555443 6788899999999999876553
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00016 Score=67.42 Aligned_cols=154 Identities=19% Similarity=0.237 Sum_probs=113.4
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHH
Q 003891 101 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY-YNWHYADAMYNLGVAYGE 179 (788)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~ 179 (788)
...+.=+.+....-..+.++..|... ....++..+.. .|++.+|...|++++. +.-.++..+..+++..+.
T Consensus 65 a~~q~ldP~R~~Rea~~~~~~ApTvq-nr~rLa~al~e-------lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa 136 (251)
T COG4700 65 ALQQKLDPERHLREATEELAIAPTVQ-NRYRLANALAE-------LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA 136 (251)
T ss_pred HHHHhcChhHHHHHHHHHHhhchhHH-HHHHHHHHHHH-------hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh
Confidence 33444455555566666666666643 23334444444 5588888888888875 455677888888899999
Q ss_pred cCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003891 180 MLKFDMAIVFYELAFHFNPH--CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 257 (788)
Q Consensus 180 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 257 (788)
.+++..|...+++..+.+|. .++....+|..+..+|++.+|...|+.++...|+ +.+....+..+.++|+.++|..-
T Consensus 137 ~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 137 IQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred hccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHH
Confidence 99999999999998888775 4677888888999999999999999999888776 56677778888888888887766
Q ss_pred HHHHHH
Q 003891 258 IEKAIA 263 (788)
Q Consensus 258 l~kal~ 263 (788)
+....+
T Consensus 216 ~~~v~d 221 (251)
T COG4700 216 YVAVVD 221 (251)
T ss_pred HHHHHH
Confidence 655543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.4e-05 Score=69.95 Aligned_cols=102 Identities=21% Similarity=0.257 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHH
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYEKAALERPMYA---EAYCNMG 99 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~---~~~~~la 99 (788)
.++..|...+..|+|++|++.|+.+....|.. ..+.+.++.+|+..+++++|+..+++-++++|.++ .+++..|
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 47888999999999999999999999987764 67899999999999999999999999999999864 5889999
Q ss_pred HHHHHCCC---------------HHHHHHHHHHHHhhCCCcHH
Q 003891 100 VIYKNRGD---------------LESAIACYERCLAVSPNFEI 127 (788)
Q Consensus 100 ~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~ 127 (788)
.+++.+.. ..+|...|++.++..|++.-
T Consensus 92 L~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 92 LSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 99998876 88999999999999999763
|
|
| >TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.7e-05 Score=83.56 Aligned_cols=171 Identities=13% Similarity=0.079 Sum_probs=118.5
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCCCC-----HHHHHHHHHHHHH-------cCCCCC
Q 003891 525 GFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCC-----DSVRHRFLSTLEQ-------LGLESL 586 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~l~~~~~~~-----~~~~~~l~~~~~~-------~gi~~~ 586 (788)
+..++.++.|+ .|..+.-++++.++|+..|+ .+|++++.|..+ ...+..+.+.+.+ .|.. .
T Consensus 284 ~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~-p 362 (487)
T TIGR02398 284 GVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWT-P 362 (487)
T ss_pred CceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCc-c
Confidence 45567788888 89999999999999999996 688888876432 1244444444443 3555 3
Q ss_pred cEEEcCCcCCcHHHHHhcccccEeecCCCCCC-chhHHHHhhhCC----ceeecCCCccCccchhHHHhhhCCcccc--c
Q 003891 587 RVDLLPLILLNHDHMQAYSLMDISLDTFPYAG-TTTTCESLYMGV----PCVTMAGSVHAHNVGVSLLTKVGLKHLI--A 659 (788)
Q Consensus 587 rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g-~~t~~eal~~Gv----Pvvt~~g~~~~~r~~~~~l~~~gl~~~i--a 659 (788)
.+.|.+.++ .++..++|+.+||+|.|+-.-| +.++.|+++++. |+|. |+.+++- ..+. ..++ .
T Consensus 363 v~~~~~~v~-~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLIL-------SefaGaa-~~l~-~AllVNP 432 (487)
T TIGR02398 363 LQFFTRSLP-YEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVL-------SEFAGAA-VELK-GALLTNP 432 (487)
T ss_pred EEEEcCCCC-HHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEE-------eccccch-hhcC-CCEEECC
Confidence 556777777 7999999999999999998854 779999999988 6664 6665322 1111 1222 4
Q ss_pred CCHHHHHHHHHHHhcCHH-HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 003891 660 KNEDEYVQLALQLASDVT-ALANLRMSLRDLMSKSPVCDGQNFALGLESTY 709 (788)
Q Consensus 660 ~~~~~y~~~a~~l~~d~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 709 (788)
.|.++.++...+-.+.+. ++++.-+++++.+.+ +|...|++.+-+.+
T Consensus 433 ~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~---~d~~~W~~~fl~~l 480 (487)
T TIGR02398 433 YDPVRMDETIYVALAMPKAEQQARMREMFDAVNY---YDVQRWADEFLAAV 480 (487)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHh
Confidence 688888877666665554 555555556666554 47788777665444
|
Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.1e-05 Score=86.57 Aligned_cols=68 Identities=26% Similarity=0.303 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 163 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA---CNNLGVIYKDRDNLDKAVECYQMALSI 230 (788)
Q Consensus 163 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~eA~~~~~~al~~ 230 (788)
+|+++.+++++|.+|..+|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.+++++++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44455555555555555555555555555555555555432 555555555555555555555555554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.6e-06 Score=70.37 Aligned_cols=73 Identities=29% Similarity=0.472 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh
Q 003891 90 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 162 (788)
Q Consensus 90 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~ 162 (788)
+...++.++|.+|..+|++++|+.+|++++++...........+.++..+|.++...|++++|++++++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3467889999999999999999999999998732233334456788888888888888888888888888765
|
... |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00042 Score=67.52 Aligned_cols=203 Identities=19% Similarity=0.155 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC
Q 003891 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDTALGCYEKAALE-----RPM 90 (788)
Q Consensus 22 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~kal~~-----~p~ 90 (788)
.-+..|..-+..+...++|++|..++.++.+-..++ +.++-..+........+.++..+|+++..+ .|+
T Consensus 29 gaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd 108 (308)
T KOG1585|consen 29 GAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD 108 (308)
T ss_pred hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc
Confidence 345667777777788888888888888887554333 334555566666667777777777777543 122
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003891 91 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAM 170 (788)
Q Consensus 91 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 170 (788)
.+..-...+--..+.-+.++|+.+|++++.+-.+..... .| .+.+
T Consensus 109 tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~---------------------ma--------------~el~ 153 (308)
T KOG1585|consen 109 TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQ---------------------MA--------------FELY 153 (308)
T ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHH---------------------HH--------------HHHH
Confidence 222222222223333445555555555544432222111 11 1223
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHH
Q 003891 171 YNLGVAYGEMLKFDMAIVFYELAFHF------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI----KPNFSQSLNN 240 (788)
Q Consensus 171 ~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~----~p~~~~~~~~ 240 (788)
-..++++.+..++++|-..+.+-... .++....+.....+|....+|..|.++++...++ .+++..++.+
T Consensus 154 gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~len 233 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLEN 233 (308)
T ss_pred HHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHH
Confidence 33445555555555555544443221 2222334444444555555666666666665554 2333444444
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 003891 241 LGVVYTVQGKMDAAAEMIEK 260 (788)
Q Consensus 241 la~~~~~~g~~~eA~~~l~k 260 (788)
|-..| ..|+.++..+.+..
T Consensus 234 LL~ay-d~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 234 LLTAY-DEGDIEEIKKVLSS 252 (308)
T ss_pred HHHHh-ccCCHHHHHHHHcC
Confidence 44433 45666665555443
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00015 Score=78.42 Aligned_cols=99 Identities=26% Similarity=0.320 Sum_probs=88.2
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003891 213 DRDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 291 (788)
Q Consensus 213 ~~g~~~eA~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 291 (788)
..|+...|++++..|+...|.... ...+||.++.+.|-...|-..+.+++.+....+-.++.+|..|..+.+.+.|++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 358889999999999988886544 6789999999999999999999999999988899999999999999999999999
Q ss_pred HHHHHhhCCCChhhHHhHHH
Q 003891 292 YEQCLKIDPDSRNAGQNRLL 311 (788)
Q Consensus 292 ~~~al~l~p~~~~a~~~~ll 311 (788)
|++|++++|+++.....+++
T Consensus 699 ~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 699 FRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHhcCCCChhhHHHHHH
Confidence 99999999999887665544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0002 Score=62.67 Aligned_cols=92 Identities=24% Similarity=0.303 Sum_probs=45.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcC
Q 003891 174 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQG 249 (788)
Q Consensus 174 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g 249 (788)
|..+...|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|+.-+++++++.... ..++...|.+|..+|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3444444555555555555555555555555555555555555555555555555443222 124444555555555
Q ss_pred CHHHHHHHHHHHHHhC
Q 003891 250 KMDAAAEMIEKAIAAN 265 (788)
Q Consensus 250 ~~~eA~~~l~kal~~~ 265 (788)
+-+.|..-|+.+-++.
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 5555555555554443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00017 Score=63.17 Aligned_cols=104 Identities=22% Similarity=0.235 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHH
Q 003891 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY----AEAYCN 97 (788)
Q Consensus 22 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~----~~~~~~ 97 (788)
.....+-..|..+...|+.+.|++.|.+++.+.|.++.+|.+.+..+.-+|+.++|++-+++++++.... ..++..
T Consensus 41 e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQ 120 (175)
T KOG4555|consen 41 KASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQ 120 (175)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 4445566778888999999999999999999999999999999999999999999999999999986543 457889
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCc
Q 003891 98 MGVIYKNRGDLESAIACYERCLAVSPNF 125 (788)
Q Consensus 98 la~~~~~~g~~~~A~~~~~~al~~~p~~ 125 (788)
.|.+|..+|+.+.|..-|+.+-++....
T Consensus 121 Rg~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 121 RGLLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 9999999999999999999998886654
|
|
| >TIGR02919 accessory Sec system glycosyltransferase GtfB | Back alignment and domain information |
|---|
Probab=98.08 E-value=9.7e-05 Score=81.67 Aligned_cols=162 Identities=10% Similarity=0.116 Sum_probs=107.7
Q ss_pred ccceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHH
Q 003891 494 VEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHR 573 (788)
Q Consensus 494 ~e~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~ 573 (788)
.+++...|.+++ |.++. ....+...++++ ....++.+.++.+++|++.|-| |.+. ++..+
T Consensus 261 ~~~~~~ip~g~i-~~~~~-------~~r~~~~~l~~t--------~s~~I~~i~~Lv~~lPd~~f~I-ga~t---e~s~k 320 (438)
T TIGR02919 261 EYQEQISQLGYL-YPFKK-------DNKYRKQALILT--------NSDQIEHLEEIVQALPDYHFHI-AALT---EMSSK 320 (438)
T ss_pred ccCceEEEEEEE-Eeecc-------ccCCcccEEEEC--------CHHHHHHHHHHHHhCCCcEEEE-EecC---cccHH
Confidence 345666776655 43211 111234455555 2899999999999999999999 5432 22356
Q ss_pred HHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCC-chhHHHHhhhCCceeecCCCccCccchhHHHhhh
Q 003891 574 FLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAG-TTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV 652 (788)
Q Consensus 574 l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g-~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~ 652 (788)
|.+. .+. .+-+.+-+.. ..+.-..|..||++||++...| +.++.||+..|+|||+..-.........
T Consensus 321 L~~L-~~y---~nvvly~~~~--~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~------ 388 (438)
T TIGR02919 321 LMSL-DKY---DNVKLYPNIT--TQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNRDFIA------ 388 (438)
T ss_pred HHHH-Hhc---CCcEEECCcC--hHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCccccc------
Confidence 6555 555 3555555443 3467789999999999999855 8899999999999998764433222211
Q ss_pred CCcccc-cCCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 003891 653 GLKHLI-AKNEDEYVQLALQLASDVTALANLRMSLRD 688 (788)
Q Consensus 653 gl~~~i-a~~~~~y~~~a~~l~~d~~~~~~~r~~~~~ 688 (788)
. ..++ ..+.++++++.+.+.+|++.++..-.+-++
T Consensus 389 ~-g~l~~~~~~~~m~~~i~~lL~d~~~~~~~~~~q~~ 424 (438)
T TIGR02919 389 S-ENIFEHNEVDQLISKLKDLLNDPNQFRELLEQQRE 424 (438)
T ss_pred C-CceecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 0 1222 368999999999999999765554444333
|
Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.08 E-value=9.6e-06 Score=66.92 Aligned_cols=64 Identities=30% Similarity=0.402 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003891 23 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKID---P----HYAPAYYNLGVVYSELMQYDTALGCYEKAAL 86 (788)
Q Consensus 23 la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~---p----~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~ 86 (788)
++.++..+|.++...|++++|+.+|+++++.. + ..+.++.++|.++...|++++|+++++++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445555555555555555555555555431 1 1133444445555555555555555544443
|
... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.9e-05 Score=71.71 Aligned_cols=74 Identities=26% Similarity=0.228 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhh---hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003891 108 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK---LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 181 (788)
Q Consensus 108 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 181 (788)
|+.|.+.++.....+|.+.+...+.+.++..++.... ...-+++|+.-|++++.++|+..++++.+|.+|...+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 5677777777788888888877777877777775532 3346788899999999999999999999999987665
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.028 Score=61.20 Aligned_cols=150 Identities=11% Similarity=0.032 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 003891 149 INQGVAYYKKALYYNW-HYADAMYNLGVAYGEML---KFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVEC 223 (788)
Q Consensus 149 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~ 223 (788)
.+++.++|++++...- .+...++.++..-...- +++.....+++++.+...+ .-++..+-..-.+..-.+.|...
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3455555555554321 12223333333222222 2555566666666553322 23445555555556667777777
Q ss_pred HHHHHhhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 224 YQMALSIKPNFSQSLNNLGVV-YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 224 ~~~al~~~p~~~~~~~~la~~-~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
|.++-+..-....++..-|.+ |...++.+-|...|+-.++..++.+..-......+...++-..|...|++++..
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 777765543333333333332 556788888888888888888888888777888888888888888888888876
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0011 Score=70.47 Aligned_cols=267 Identities=15% Similarity=0.118 Sum_probs=185.7
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhC------CC--CHHHHHHHHHHHH
Q 003891 33 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA-ALER------PM--YAEAYCNMGVIYK 103 (788)
Q Consensus 33 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ka-l~~~------p~--~~~~~~~la~~~~ 103 (788)
.+.+..+...+..-.+.+.....+.+.+++..+..++..|++.+|.+.+... +... |. ....|+++|.+++
T Consensus 215 ~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~ 294 (696)
T KOG2471|consen 215 FLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHY 294 (696)
T ss_pred HHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEee
Confidence 3455566667777777777777788999999999999999999999988654 2222 22 2345789999999
Q ss_pred HCCCHHHHHHHHHHHHhh---------CC--CcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003891 104 NRGDLESAIACYERCLAV---------SP--NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 172 (788)
Q Consensus 104 ~~g~~~~A~~~~~~al~~---------~p--~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 172 (788)
+.+.|.-+..+|.++++. .| ...-....-..++++.|..+...|+...|.++|.++......++..|..
T Consensus 295 ~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLR 374 (696)
T KOG2471|consen 295 QLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLR 374 (696)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHH
Confidence 999999999999999961 11 1111122234567888888888999999999999999999999999999
Q ss_pred HHHHHHHcCC-------------------------------------------------hHHHHHHHHHHHhcC------
Q 003891 173 LGVAYGEMLK-------------------------------------------------FDMAIVFYELAFHFN------ 197 (788)
Q Consensus 173 la~~~~~~g~-------------------------------------------------~~~A~~~~~~al~~~------ 197 (788)
++.+.....+ .+-|.-+++.++-+-
T Consensus 375 lAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~ 454 (696)
T KOG2471|consen 375 LAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDL 454 (696)
T ss_pred HHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcc
Confidence 9988742110 123444444444220
Q ss_pred ---------------------------------------C-CC-----------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 198 ---------------------------------------P-HC-----------AEACNNLGVIYKDRDNLDKAVECYQM 226 (788)
Q Consensus 198 ---------------------------------------p-~~-----------~~~~~~la~~~~~~g~~~eA~~~~~~ 226 (788)
| .. ..++.+.+.+-.++|+.-.|+..-.+
T Consensus 455 ~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~k 534 (696)
T KOG2471|consen 455 GSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATK 534 (696)
T ss_pred hhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHH
Confidence 1 00 12344556666778888888888888
Q ss_pred HHhhCCCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHH-----------------------hCCC----------C
Q 003891 227 ALSIKPNFSQSLNNLGVVY-----TVQGKMDAAAEMIEKAIA-----------------------ANPT----------Y 268 (788)
Q Consensus 227 al~~~p~~~~~~~~la~~~-----~~~g~~~eA~~~l~kal~-----------------------~~p~----------~ 268 (788)
.++. ++...++..+|.+| ..+.+..+|..++.-.+- ++|. .
T Consensus 535 LLq~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~s 613 (696)
T KOG2471|consen 535 LLQL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLS 613 (696)
T ss_pred HHhh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCC
Confidence 8765 44455555555554 456777777766544210 0110 0
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003891 269 -----AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 300 (788)
Q Consensus 269 -----~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p 300 (788)
...+++||.++.-+|++++|...+..+..+-+
T Consensus 614 v~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~h 650 (696)
T KOG2471|consen 614 VEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLH 650 (696)
T ss_pred HHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhh
Confidence 13578899999999999999999999888877
|
|
| >cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.7e-05 Score=88.41 Aligned_cols=111 Identities=14% Similarity=0.028 Sum_probs=76.0
Q ss_pred HHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCC----cccc--------cCCHHH
Q 003891 598 HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGL----KHLI--------AKNEDE 664 (788)
Q Consensus 598 ~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl----~~~i--------a~~~~~ 664 (788)
.++...|+.||+++-|+.| +.|.|.+|||+||+||||-....+.. .+-...|- .-+| ..+.++
T Consensus 466 ~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~----~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~ 541 (590)
T cd03793 466 LDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGC----FMEEHIEDPESYGIYIVDRRFKSPDESVQQ 541 (590)
T ss_pred cchHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhh----hhHHHhccCCCceEEEecCCccchHHHHHH
Confidence 3466678889999999988 55999999999999999955443311 11111111 1122 346778
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 003891 665 YVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 714 (788)
Q Consensus 665 y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 714 (788)
+.+...++++. +.++++.++.+.. ..+..|+++.++....+||..+.+
T Consensus 542 La~~m~~~~~~-~~r~~~~~r~~~~-r~s~~f~W~~~~~~Y~~A~~~Al~ 589 (590)
T cd03793 542 LTQYMYEFCQL-SRRQRIIQRNRTE-RLSDLLDWRNLGRYYRKARQLALS 589 (590)
T ss_pred HHHHHHHHhCC-cHHHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHhh
Confidence 88888888855 4555555554322 224679999999999999988765
|
GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.7e-05 Score=71.86 Aligned_cols=91 Identities=25% Similarity=0.300 Sum_probs=67.5
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHH---HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLK---LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ----- 73 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----- 73 (788)
|.+.++.....+|.+.+++.+-+.++..++.... ...-+++|+.-|++++.++|+..++++.+|.+|...+.
T Consensus 10 ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~ 89 (186)
T PF06552_consen 10 ARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDT 89 (186)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCCh
Confidence 5678888999999999999999999999887633 33567899999999999999999999999999987653
Q ss_pred ------HHHHHHHHHHHHHhCCCCH
Q 003891 74 ------YDTALGCYEKAALERPMYA 92 (788)
Q Consensus 74 ------~~~A~~~~~kal~~~p~~~ 92 (788)
|++|..+|+++...+|++.
T Consensus 90 ~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 90 AEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 5556666666666666653
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00024 Score=75.47 Aligned_cols=282 Identities=12% Similarity=0.007 Sum_probs=186.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHh-----C----------CCCHH
Q 003891 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY-SELMQYDTALGCYEKAALE-----R----------PMYAE 93 (788)
Q Consensus 30 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~kal~~-----~----------p~~~~ 93 (788)
.+...+..+.++...+.++..-.++......+++.+.+. ++.|.+.. ...++....+ . .+...
T Consensus 23 ~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~-~~ll~el~aL~~~~~~~~~~~~gld~~~~t~ 101 (696)
T KOG2471|consen 23 QAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQH-SVLLKELEALTADADAPGDVSSGLSLKQGTV 101 (696)
T ss_pred HHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchh-HHHHHHHHHHHHhhccccchhcchhhhcchH
Confidence 344456678999999999888888777766666666554 44444322 2222222111 1 12345
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh------CC--C
Q 003891 94 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY------NW--H 165 (788)
Q Consensus 94 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~------~p--~ 165 (788)
.+++.|.+|+...++.+|++.................. ......-..+......++|+.++.-.-++ .+ +
T Consensus 102 ~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa--~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn 179 (696)
T KOG2471|consen 102 MDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAA--SVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGN 179 (696)
T ss_pred HhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 78888999998888988888777665543332221111 11111122333344556666554332221 00 0
Q ss_pred C-------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 003891 166 Y-------------------------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 220 (788)
Q Consensus 166 ~-------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA 220 (788)
+ ..+.......|..+.+...+..-.+.++....+.+.+....+..++..|++.+|
T Consensus 180 ~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA 259 (696)
T KOG2471|consen 180 HIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKA 259 (696)
T ss_pred ccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHH
Confidence 0 012333344556667777777777777777788899999999999999999999
Q ss_pred HHHHHHHH-hhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------C---------CCCHHHHH
Q 003891 221 VECYQMAL-SIKPN--------FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA---------N---------PTYAEAYN 273 (788)
Q Consensus 221 ~~~~~~al-~~~p~--------~~~~~~~la~~~~~~g~~~eA~~~l~kal~~---------~---------p~~~~~~~ 273 (788)
.+.+...- ...+. ....++++|.+++..|.|..+..+|.+|++. . ....++.+
T Consensus 260 ~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilY 339 (696)
T KOG2471|consen 260 MKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILY 339 (696)
T ss_pred HHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHH
Confidence 99886542 22222 1235789999999999999999999999961 1 12357899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhh
Q 003891 274 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 314 (788)
Q Consensus 274 ~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~ 314 (788)
+.|..|...|+.-.|.++|.++.+..-.++..|..+.-++.
T Consensus 340 NcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 340 NCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 99999999999999999999999999888888877554443
|
|
| >TIGR01426 MGT glycosyltransferase, MGT family | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00014 Score=80.44 Aligned_cols=165 Identities=14% Similarity=0.176 Sum_probs=107.6
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 003891 523 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 602 (788)
Q Consensus 523 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 602 (788)
.+..++|.++++.....+.+++...+.+...+.-.++..|.+.. ...+. .+ +++|.+.++++ ..+
T Consensus 223 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~----~~~~~------~~-~~~v~~~~~~p-~~~--- 287 (392)
T TIGR01426 223 DGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVD----PADLG------EL-PPNVEVRQWVP-QLE--- 287 (392)
T ss_pred CCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCC----hhHhc------cC-CCCeEEeCCCC-HHH---
Confidence 34567888999887777777777777777777555555554311 11111 23 37888888886 344
Q ss_pred hcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc---CCHHHHHHHHHHHhcCHHHH
Q 003891 603 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVTAL 679 (788)
Q Consensus 603 ~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia---~~~~~y~~~a~~l~~d~~~~ 679 (788)
.+..||+++. .+|..|++|||.+|+|+|+++... ....-+..+...|....+- -+.++..+...++..|++.+
T Consensus 288 ll~~~~~~I~---hgG~~t~~Eal~~G~P~v~~p~~~-dq~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~~~ 363 (392)
T TIGR01426 288 ILKKADAFIT---HGGMNSTMEALFNGVPMVAVPQGA-DQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSDPRYA 363 (392)
T ss_pred HHhhCCEEEE---CCCchHHHHHHHhCCCEEecCCcc-cHHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcCHHHH
Confidence 4556999982 366678999999999999987542 2334455666677765443 25678888888899999866
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 003891 680 ANLRMSLRDLMSKSPVCDGQNFALGLESTY 709 (788)
Q Consensus 680 ~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 709 (788)
+.++ .+++.+... ...+..++.+|+.+
T Consensus 364 ~~~~-~l~~~~~~~--~~~~~aa~~i~~~~ 390 (392)
T TIGR01426 364 ERLR-KMRAEIREA--GGARRAADEIEGFL 390 (392)
T ss_pred HHHH-HHHHHHHHc--CCHHHHHHHHHHhh
Confidence 6653 334444322 24566666676654
|
This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production. |
| >TIGR03492 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=98.02 E-value=5e-05 Score=83.61 Aligned_cols=156 Identities=15% Similarity=0.165 Sum_probs=99.8
Q ss_pred CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCC-------------cEEEcCCcCCcHHHHH
Q 003891 536 AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL-------------RVDLLPLILLNHDHMQ 602 (788)
Q Consensus 536 ~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~-------------rv~~~~~~~~~~~~~~ 602 (788)
.+.-|.++++..++.++ |+.++++...+. ...+.+++.+.+.|+... .+.+.+. ..+...
T Consensus 220 ~~~lp~~l~al~~L~~~-~~~~~v~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~ 292 (396)
T TIGR03492 220 YRNLKLLLRALEALPDS-QPFVFLAAIVPS---LSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLG---RGAFAE 292 (396)
T ss_pred HccHHHHHHHHHHHhhC-CCeEEEEEeCCC---CCHHHHHHHHHhcCceecCCccccchhhccCceEEEec---hHhHHH
Confidence 34556888887777655 777777654221 234556666666676521 2444433 346777
Q ss_pred hcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhh----CCccc-ccCCHHHHHHHHHHHhcCHH
Q 003891 603 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV----GLKHL-IAKNEDEYVQLALQLASDVT 677 (788)
Q Consensus 603 ~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~----gl~~~-ia~~~~~y~~~a~~l~~d~~ 677 (788)
.|+.||++|-. .||+|.|++.+|+|+|..+++.+ ...+.++... |-... +-.+.+...+...+|..|++
T Consensus 293 ~l~~ADlvI~r----SGt~T~E~a~lg~P~Ilip~~~~--q~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~d~~ 366 (396)
T TIGR03492 293 ILHWADLGIAM----AGTATEQAVGLGKPVIQLPGKGP--QFTYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLLADPE 366 (396)
T ss_pred HHHhCCEEEEC----cCHHHHHHHHhCCCEEEEeCCCC--HHHHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHHcCHH
Confidence 88899999954 45666999999999999986533 3455555542 43333 34567888899999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 003891 678 ALANLRMSLRDLMSKSPVCDGQNFALGLE 706 (788)
Q Consensus 678 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~e 706 (788)
.+.++++..+.++... ...++.++.++
T Consensus 367 ~~~~~~~~~~~~lg~~--~a~~~ia~~i~ 393 (396)
T TIGR03492 367 LLERCRRNGQERMGPP--GASARIAESIL 393 (396)
T ss_pred HHHHHHHHHHHhcCCC--CHHHHHHHHHH
Confidence 9888886555554321 23444444443
|
This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00068 Score=68.88 Aligned_cols=152 Identities=13% Similarity=-0.041 Sum_probs=124.3
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHHcCCHHHH
Q 003891 145 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-NPHC---AEACNNLGVIYKDRDNLDKA 220 (788)
Q Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~g~~~eA 220 (788)
..|++.+|....++.++..|.+.-++..--.+++.+|+.+.-...+++.+.. +++. ..+.-.++..+.+.|-|++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 3678889999999999999998888888888889999999999999998877 6655 44555677888899999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 221 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYRDAGSISLAIDAYEQCL 296 (788)
Q Consensus 221 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~----~~~~~~la~~~~~~g~~~eA~~~~~~al 296 (788)
.+.-++++++++.+..+...++.++...|+++++.++..+--..-... ..-|..-+.++...+.|+.|++.|.+-+
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999887764432221 1234557788888899999999998654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00045 Score=67.95 Aligned_cols=196 Identities=14% Similarity=0.120 Sum_probs=142.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhh
Q 003891 64 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 143 (788)
Q Consensus 64 lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~ 143 (788)
-+.+....|+..+.+.-+...... -..+-.........+..++.++|-+. .+.+.+..++
T Consensus 128 hAe~~~~lgnpqesLdRl~~L~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl~-------------~Vmy~~~~~l 187 (366)
T KOG2796|consen 128 HAELQQYLGNPQESLDRLHKLKTV-------VSKILANLEQGLAEESSIRLWRKRLG-------------RVMYSMANCL 187 (366)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHH-------HHHHHHHHHhccchhhHHHHHHHHHH-------------HHHHHHHHHH
Confidence 355556677777766655554321 11122222223333555555555432 2333334444
Q ss_pred hhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCC
Q 003891 144 KLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN------PHCAEACNNLGVIYKDRDN 216 (788)
Q Consensus 144 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~ 216 (788)
.-.+.|.-....+.+.++.+ |..+.....+|.+..+.|+.+.|..++++.-+.+ .....+..+.+.+|.-.++
T Consensus 188 lG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn 267 (366)
T KOG2796|consen 188 LGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNN 267 (366)
T ss_pred hcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccc
Confidence 44679999999999999988 5677888899999999999999999999655432 2345677788899999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHH
Q 003891 217 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA---EAYNNLGVLY 279 (788)
Q Consensus 217 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~---~~~~~la~~~ 279 (788)
+.+|...|.+.+..++.++.+.++.|.|+.-.|+...|++.++.++...|... ...++|..+|
T Consensus 268 ~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 268 FAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred hHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998753 2344444443
|
|
| >PF13524 Glyco_trans_1_2: Glycosyl transferases group 1 | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.7e-05 Score=64.53 Aligned_cols=90 Identities=14% Similarity=0.160 Sum_probs=66.0
Q ss_pred EeecCCCCCC-chhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 003891 609 ISLDTFPYAG-TTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLR 687 (788)
Q Consensus 609 v~Ld~~~~~g-~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~ 687 (788)
|+|.+..++| +...+|+|++|+|||+-.-. +..-+-.-|...+...|+++.+++...|.+||++++.++++.+
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~------~~~~~~~~~~~~~~~~~~~el~~~i~~ll~~~~~~~~ia~~a~ 74 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDSP------GLREIFEDGEHIITYNDPEELAEKIEYLLENPEERRRIAKNAR 74 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECChH------HHHHHcCCCCeEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 4566665544 66899999999999983321 1111111144456677999999999999999999999999999
Q ss_pred HHhhcCCCCChHHHHHHHH
Q 003891 688 DLMSKSPVCDGQNFALGLE 706 (788)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~e 706 (788)
+.+.+. ++.+..++++.
T Consensus 75 ~~v~~~--~t~~~~~~~il 91 (92)
T PF13524_consen 75 ERVLKR--HTWEHRAEQIL 91 (92)
T ss_pred HHHHHh--CCHHHHHHHHH
Confidence 998755 67777776653
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.6e-05 Score=74.55 Aligned_cols=99 Identities=20% Similarity=0.235 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 103 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~ 103 (788)
+.-+...|+.++....|..|+.+|.+++.++|..+..|.+.+.++++.++++.+.....+++++.|+....++.+|....
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l 89 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL 89 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence 44467778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCHHHHHHHHHHHHhhC
Q 003891 104 NRGDLESAIACYERCLAVS 122 (788)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~ 122 (788)
....|++|+..++++..+.
T Consensus 90 ~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 90 QSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred hhccccHHHHHHHHHHHHH
Confidence 9999999999999997664
|
|
| >COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00059 Score=73.36 Aligned_cols=148 Identities=20% Similarity=0.275 Sum_probs=105.6
Q ss_pred CCeEEEecCCC---CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 003891 525 GFITFGSFNNL---AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 601 (788)
Q Consensus 525 ~~~~f~~~~~~---~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~ 601 (788)
+.+|...++-. .+++..+-+++..+.+ +..++..++. ....++.....+.|+ +.+.|.. ++..
T Consensus 182 ~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~---~~~v~~~~G~----~~~~~~~~~~~~~~~----~~v~~f~---~dm~ 247 (357)
T COG0707 182 DKKTILVTGGSQGAKALNDLVPEALAKLAN---RIQVIHQTGK----NDLEELKSAYNELGV----VRVLPFI---DDMA 247 (357)
T ss_pred CCcEEEEECCcchhHHHHHHHHHHHHHhhh---CeEEEEEcCc----chHHHHHHHHhhcCc----EEEeeHH---hhHH
Confidence 44555554422 4455555554444443 4555555443 225677777777777 5666663 5677
Q ss_pred HhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCcc---CccchhHHHhhhCCcccccC---CHHHHHHHHHHHhc
Q 003891 602 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVH---AHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLAS 674 (788)
Q Consensus 602 ~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~---~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~l~~ 674 (788)
.+|..+|+++ + +|++|..|.+++|+|+|-.+=..- .....|-.|...|..-++.. +.+.+++...++.+
T Consensus 248 ~~~~~ADLvI----sRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~ 323 (357)
T COG0707 248 ALLAAADLVI----SRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLS 323 (357)
T ss_pred HHHHhccEEE----eCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhc
Confidence 8888899999 6 899999999999999998875443 45567888888888766643 46899999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q 003891 675 DVTALANLRMSLRDLM 690 (788)
Q Consensus 675 d~~~~~~~r~~~~~~~ 690 (788)
+++.+++|+++.++..
T Consensus 324 ~~~~l~~m~~~a~~~~ 339 (357)
T COG0707 324 NPEKLKAMAENAKKLG 339 (357)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999988653
|
|
| >PLN02670 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00041 Score=77.51 Aligned_cols=175 Identities=11% Similarity=0.041 Sum_probs=108.6
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC-----HHHHHHHHHHHHHcCCCCCcEEEcCCcCCcH
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DSVRHRFLSTLEQLGLESLRVDLLPLILLNH 598 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~-----~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~ 598 (788)
...|+|.||++...++++-++-.+.-|...|..-||.+..+... +...+.+.++.+..| +++.+++| +.
T Consensus 277 ~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG-----~vv~~W~P-Q~ 350 (472)
T PLN02670 277 VNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRG-----MIHVGWVP-QV 350 (472)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcccccchhhcCChHHHHhccCCC-----eEEeCcCC-HH
Confidence 35689999999999999999999999999999999987643111 012233443332222 56678888 56
Q ss_pred HHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc-------CCHHHHHHHHHH
Q 003891 599 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA-------KNEDEYVQLALQ 671 (788)
Q Consensus 599 ~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia-------~~~~~y~~~a~~ 671 (788)
+.+.- ..+..|+ ..+|.+|++||+++|||+|+++-- .-....+.++...|+.--+. -+.++..+...+
T Consensus 351 ~IL~H-~~v~~Fv---tHcGwnS~~Eai~~GVP~l~~P~~-~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~~e~i~~av~~ 425 (472)
T PLN02670 351 KILSH-ESVGGFL---THCGWNSVVEGLGFGRVLILFPVL-NEQGLNTRLLHGKKLGLEVPRDERDGSFTSDSVAESVRL 425 (472)
T ss_pred HHhcC-cccceee---ecCCcchHHHHHHcCCCEEeCcch-hccHHHHHHHHHcCeeEEeeccccCCcCcHHHHHHHHHH
Confidence 65533 4445566 247888999999999999999831 11223344444455553331 256677777777
Q ss_pred HhcCHHHHHHHHHHHH---HHhhcCCCCChHHHHHHHHHHHHHH
Q 003891 672 LASDVTALANLRMSLR---DLMSKSPVCDGQNFALGLESTYRNM 712 (788)
Q Consensus 672 l~~d~~~~~~~r~~~~---~~~~~~~~~~~~~~~~~~e~~~~~~ 712 (788)
+..|++ -..+|++++ +.+... -.....++.+++.+..+
T Consensus 426 vm~~~~-g~~~r~~a~~l~~~~~~~--~~~~~~~~~~~~~l~~~ 466 (472)
T PLN02670 426 AMVDDA-GEEIRDKAKEMRNLFGDM--DRNNRYVDELVHYLREN 466 (472)
T ss_pred HhcCcc-hHHHHHHHHHHHHHHhCc--chhHHHHHHHHHHHHHh
Confidence 776642 123344333 333222 24567777777766553
|
|
| >COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00083 Score=74.09 Aligned_cols=165 Identities=15% Similarity=0.146 Sum_probs=110.1
Q ss_pred CCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 003891 522 LTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 601 (788)
Q Consensus 522 ~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~ 601 (788)
..+..++|-++++..-. .++++...+.+...|...++-.+.. +. ...++ ++.+...++++ ..+
T Consensus 234 ~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~------~~------~~~~~-p~n~~v~~~~p-~~~-- 296 (406)
T COG1819 234 PADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGA------RD------TLVNV-PDNVIVADYVP-QLE-- 296 (406)
T ss_pred cCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEecccc------cc------ccccC-CCceEEecCCC-HHH--
Confidence 34566777777766433 7777777777777765555544321 00 12244 47888888887 444
Q ss_pred HhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc---CCHHHHHHHHHHHhcCHHH
Q 003891 602 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVTA 678 (788)
Q Consensus 602 ~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia---~~~~~y~~~a~~l~~d~~~ 678 (788)
.+..+|+++ .-||.+||.|||..|||+|.+++. +-.-.-|.-+..+|....+- .+++...+...++.+|...
T Consensus 297 -~l~~ad~vI---~hGG~gtt~eaL~~gvP~vv~P~~-~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~~~ 371 (406)
T COG1819 297 -LLPRADAVI---HHGGAGTTSEALYAGVPLVVIPDG-ADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADDSY 371 (406)
T ss_pred -HhhhcCEEE---ecCCcchHHHHHHcCCCEEEecCC-cchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCHHH
Confidence 455599998 237788999999999999999976 33444667777888886664 5778888888888888877
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 003891 679 LANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 711 (788)
Q Consensus 679 ~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 711 (788)
++..+.-. +.+... ...+..++.+|+..++
T Consensus 372 ~~~~~~~~-~~~~~~--~g~~~~a~~le~~~~~ 401 (406)
T COG1819 372 RRAAERLA-EEFKEE--DGPAKAADLLEEFARE 401 (406)
T ss_pred HHHHHHHH-HHhhhc--ccHHHHHHHHHHHHhc
Confidence 66644443 333322 2355577777776543
|
|
| >PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00051 Score=81.78 Aligned_cols=177 Identities=16% Similarity=0.116 Sum_probs=122.6
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcE----EEEecCCCC-CHHHHHHHHHHHH--------HcCCC-CCcE
Q 003891 525 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSR----LVVKCKPFC-CDSVRHRFLSTLE--------QLGLE-SLRV 588 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~----l~l~~~~~~-~~~~~~~l~~~~~--------~~gi~-~~rv 588 (788)
|..++.++.++ .|..+.-+.+|.+.|...|+-+ |+-+..|.. .-+..+.+++.+. ++|-. -.-|
T Consensus 362 g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv 441 (934)
T PLN03064 362 GRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPI 441 (934)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceE
Confidence 34467788887 8999999999999999999843 443443322 2133344444442 23322 1125
Q ss_pred EEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhh-----CCceeecCCCccCccch-h-HHHhhhCCcccc--
Q 003891 589 DLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYM-----GVPCVTMAGSVHAHNVG-V-SLLTKVGLKHLI-- 658 (788)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~-----GvPvvt~~g~~~~~r~~-~-~~l~~~gl~~~i-- 658 (788)
++....-+.+++.++|+.+||||.|+-. |-+.++.|+++| |++|+. .++ + ..| |-..++
T Consensus 442 ~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILS--------EfaGaa~~L---~~~AllVN 510 (934)
T PLN03064 442 HHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILS--------EFAGAAQSL---GAGAILVN 510 (934)
T ss_pred EEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEe--------CCCchHHHh---CCceEEEC
Confidence 5554433479999999999999999988 558899999999 677773 333 2 122 222333
Q ss_pred cCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 003891 659 AKNEDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 715 (788)
Q Consensus 659 a~~~~~y~~~a~~l~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 715 (788)
..|.++.++...+.++ ++++++++.+++++.+.+ +|...|++.|.+.+...|..
T Consensus 511 P~D~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~~---~d~~~Wa~~fl~~L~~~~~~ 565 (934)
T PLN03064 511 PWNITEVAASIAQALNMPEEEREKRHRHNFMHVTT---HTAQEWAETFVSELNDTVVE 565 (934)
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccc---CCHHHHHHHHHHHHHHHHhh
Confidence 3588888888877776 888888888888887654 68999999988888888754
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0014 Score=70.64 Aligned_cols=190 Identities=14% Similarity=0.070 Sum_probs=114.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003891 96 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGV 175 (788)
Q Consensus 96 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 175 (788)
..+..-..+..+.+.-++.-.+|++++|+...++..++. .......+|.++|+++++...... ....
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAE---------EeA~Ti~Eae~l~rqAvkAgE~~l----g~s~ 238 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAE---------EEASTIVEAEELLRQAVKAGEASL----GKSQ 238 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccc---------ccccCHHHHHHHHHHHHHHHHHhh----chhh
Confidence 344445566677788888888888888877655443322 112346777788887776532211 0111
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCH
Q 003891 176 AYGEMLKFDMAIVFYELAFHFNPH--CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKM 251 (788)
Q Consensus 176 ~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~ 251 (788)
.....|.. -+....... ...+...+|.+..++|+.+||++.++..++..|. +..++.+|..++..++.|
T Consensus 239 ~~~~~g~~-------~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Y 311 (539)
T PF04184_consen 239 FLQHHGHF-------WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAY 311 (539)
T ss_pred hhhcccch-------hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCH
Confidence 11111111 011111111 1345567888888888888888888888877664 355788888888888888
Q ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHhhCCCChhh
Q 003891 252 DAAAEMIEKAIAA-NPTYAEAYNNLGVLYRD-AGS---------------ISLAIDAYEQCLKIDPDSRNA 305 (788)
Q Consensus 252 ~eA~~~l~kal~~-~p~~~~~~~~la~~~~~-~g~---------------~~eA~~~~~~al~l~p~~~~a 305 (788)
.++...+.+.-++ -|+.+...+.-+.+..+ .++ -..|.+.+.+|++.+|.-+..
T Consensus 312 ad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 312 ADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 8888888886443 25555555555444322 111 234678888888888886654
|
The molecular function of this protein is uncertain. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.015 Score=63.10 Aligned_cols=260 Identities=12% Similarity=0.087 Sum_probs=146.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHH
Q 003891 32 TSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALER--------PMYAEAYCNMGVIY 102 (788)
Q Consensus 32 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~--------p~~~~~~~~la~~~ 102 (788)
.+....|+++. +.+.+...+ +..+..+..+......++++++..+.+++...- .......+..-..+
T Consensus 6 eaaWrl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~l 81 (352)
T PF02259_consen 6 EAAWRLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKL 81 (352)
T ss_pred HHHHhcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 45566788888 333333322 233566666777778899999999998886531 11111111111122
Q ss_pred HHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCH--HHHHHHHHHHHHh----CCCCHHHHHHHHHH
Q 003891 103 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI--NQGVAYYKKALYY----NWHYADAMYNLGVA 176 (788)
Q Consensus 103 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~--~~A~~~~~~al~~----~p~~~~~~~~la~~ 176 (788)
....+.+++..+....... ......+...+...-. ....++ -+-+-.++..+-. .......+...+.+
T Consensus 82 q~L~Elee~~~~~~~~~~~----~~~~~~l~~~W~~Rl~--~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~ 155 (352)
T PF02259_consen 82 QQLVELEEIIELKSNLSQN----PQDLKSLLKRWRSRLP--NMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKL 155 (352)
T ss_pred hHHHHHHHHHHHHHhhccc----HHHHHHHHHHHHHHHH--HhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 2223334444433221110 1111111111111000 001111 1111122222222 33455678888888
Q ss_pred HHHcCChHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CC-C-----------------
Q 003891 177 YGEMLKFDMAIVFYELAFHFNPH----CAEACNNLGVIYKDRDNLDKAVECYQMALSI-KP-N----------------- 233 (788)
Q Consensus 177 ~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~p-~----------------- 233 (788)
..+.|+++.|...+.++...++. .+.+....+.++...|+..+|+..++..++. .. .
T Consensus 156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (352)
T PF02259_consen 156 ARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESL 235 (352)
T ss_pred HHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccccc
Confidence 88999999998888888876421 4677778888888889989998888887761 10 0
Q ss_pred ---------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------
Q 003891 234 ---------------FSQSLNNLGVVYTVQ------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS-------- 284 (788)
Q Consensus 234 ---------------~~~~~~~la~~~~~~------g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~-------- 284 (788)
...++..+|...... ++.++++..|+++++.+|+...+|+.+|..+...=+
T Consensus 236 ~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~ 315 (352)
T PF02259_consen 236 EVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEE 315 (352)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 022555666666666 778888888888888888888888888877654311
Q ss_pred ---------HHHHHHHHHHHHhhCCC
Q 003891 285 ---------ISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 285 ---------~~eA~~~~~~al~l~p~ 301 (788)
...|+..|-+++...++
T Consensus 316 ~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 316 SSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 12355666666666555
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0004 Score=72.66 Aligned_cols=135 Identities=9% Similarity=0.041 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD-RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 247 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 247 (788)
+|..+.....+.+..+.|...|+++.+..+....+|...|.+-.. .++.+.|.+.|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 455666667777778889999999986666678888888888666 4556669999999999999999988888888889
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 003891 248 QGKMDAAAEMIEKAIAANPTYA---EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 303 (788)
Q Consensus 248 ~g~~~eA~~~l~kal~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~ 303 (788)
.++.+.|...|++++..-+... .+|......-.+.|+.+...+.++++.+..|++.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999988766554 5788888888899999999999999999988843
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0014 Score=66.71 Aligned_cols=162 Identities=14% Similarity=-0.008 Sum_probs=126.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh-CCCC---HHHH
Q 003891 95 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY-NWHY---ADAM 170 (788)
Q Consensus 95 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~ 170 (788)
....+.+....|++.+|....++.++-.|.+..++..--.+++. .|+...-...+++.+.. +++. ..+.
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy-------~G~~~~~k~ai~kIip~wn~dlp~~sYv~ 178 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFY-------NGNQIGKKNAIEKIIPKWNADLPCYSYVH 178 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHh-------ccchhhhhhHHHHhccccCCCCcHHHHHH
Confidence 34456677788999999999999999999987555444444444 55888888888888876 6555 3445
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHH
Q 003891 171 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYT 246 (788)
Q Consensus 171 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~ 246 (788)
-.++..+.+.|-|++|.+.-++++++++.+..+...++.++...++++++.+++.+.-..-... ..-|...+.++.
T Consensus 179 GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~i 258 (491)
T KOG2610|consen 179 GMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHI 258 (491)
T ss_pred HHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhh
Confidence 5677888999999999999999999999999999999999999999999999988754332211 113456678888
Q ss_pred HcCCHHHHHHHHHHHHH
Q 003891 247 VQGKMDAAAEMIEKAIA 263 (788)
Q Consensus 247 ~~g~~~eA~~~l~kal~ 263 (788)
+.+.|+.|+++|.+-+-
T Consensus 259 E~aeye~aleIyD~ei~ 275 (491)
T KOG2610|consen 259 EGAEYEKALEIYDREIW 275 (491)
T ss_pred cccchhHHHHHHHHHHH
Confidence 88999999999987653
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0088 Score=68.91 Aligned_cols=252 Identities=24% Similarity=0.294 Sum_probs=172.2
Q ss_pred HcCChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 003891 36 LAGNTQDGIQKYYEALKI-----DPHYAPAYYNLGVVYSELM-----QYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 36 ~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g-----~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~ 105 (788)
...|.++|+.+|+.+.+. .-.++.+.+.+|.+|.+.. +++.|+.+|.++-+.. ++.+.+.+|.++..-
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g 338 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETG 338 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcC
Confidence 346899999999998771 1225667889999998743 7788999999987764 567888899988876
Q ss_pred C---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C
Q 003891 106 G---DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM-L 181 (788)
Q Consensus 106 g---~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g 181 (788)
. ++..|.++|..|.+.. +..+.+.++.++.. | .....+...|..+++++.+.+ .+.+...++..+... +
T Consensus 339 ~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~-G--~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~ 411 (552)
T KOG1550|consen 339 TKERDYRRAFEYYSLAAKAG--HILAIYRLALCYEL-G--LGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVG 411 (552)
T ss_pred CccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHh-C--CCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccc
Confidence 6 6789999999987653 44566666655543 3 334568899999999999887 455555555544333 7
Q ss_pred ChHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----C
Q 003891 182 KFDMAIVFYELAFHFNPHC----AEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ----G 249 (788)
Q Consensus 182 ~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~----g 249 (788)
.++.+.-.+.......-.. ...+......... ..+...+...+.++.. ..+..+...+|.+|..- .
T Consensus 412 ~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~ 489 (552)
T KOG1550|consen 412 RYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGR 489 (552)
T ss_pred cccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCC
Confidence 7777766665554432221 1111111111111 1245556666666543 45677888888888764 4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCC
Q 003891 250 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA---GSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 250 ~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~---g~~~eA~~~~~~al~l~p~ 301 (788)
+++.|...|.++.... ....+++|.++..- .....|..+|.++.+.+..
T Consensus 490 d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 490 DPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSR 541 (552)
T ss_pred ChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCch
Confidence 6999999999998877 88899999988752 1278899999998877654
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.033 Score=65.29 Aligned_cols=286 Identities=14% Similarity=0.026 Sum_probs=185.6
Q ss_pred CHHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCC
Q 003891 1 MLVASYHKALSADPSYKPAAECLAIVLTDLGTSLK-LAGNTQDGIQKYYEALKIDPH--Y----APAYYNLGVVYSELMQ 73 (788)
Q Consensus 1 ~Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~-~~g~~~~A~~~~~~al~~~p~--~----~~~~~~lg~~~~~~g~ 73 (788)
+|+++++-+++..+=. ...-+.+.+.+|.+++ ...++++|..++++++.+... . ..+.+.++.++.+.+.
T Consensus 39 ~ai~CL~~~~~~~~l~---p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~ 115 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLS---PRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNP 115 (608)
T ss_pred HHHHHHHHHhccCCCC---HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCH
Confidence 4788888888622222 2345677888898887 678999999999999887643 2 2345677888888887
Q ss_pred HHHHHHHHHHHHHhCCC---C-HHHHHHH--HHHHHHCCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHhhhhhhh
Q 003891 74 YDTALGCYEKAALERPM---Y-AEAYCNM--GVIYKNRGDLESAIACYERCLAVSP--NFEIAKNNMAIALTDLGTKVKL 145 (788)
Q Consensus 74 ~~~A~~~~~kal~~~p~---~-~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~l~~lg~~~~~ 145 (788)
.. |...+++.++.... . ....+.+ ...+...+++..|++.++....... .+.... ..+....+.+...
T Consensus 116 ~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~---v~~~l~~~~l~l~ 191 (608)
T PF10345_consen 116 KA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF---VLASLSEALLHLR 191 (608)
T ss_pred HH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH---HHHHHHHHHHHhc
Confidence 77 99999999886544 1 2222222 3333334799999999999988763 333222 2233334455566
Q ss_pred cCCHHHHHHHHHHHHHhCC------C----CHHHHHHHHH--HHHHcCChHHHHHHHHHHHh---c---CC---C---C-
Q 003891 146 EGDINQGVAYYKKALYYNW------H----YADAMYNLGV--AYGEMLKFDMAIVFYELAFH---F---NP---H---C- 200 (788)
Q Consensus 146 ~g~~~~A~~~~~~al~~~p------~----~~~~~~~la~--~~~~~g~~~~A~~~~~~al~---~---~p---~---~- 200 (788)
.+..+++++..+++..... + ...++..+-. ++...|+++.+...+++.-+ . .+ . +
T Consensus 192 ~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~ 271 (608)
T PF10345_consen 192 RGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDG 271 (608)
T ss_pred CCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCe
Confidence 7777788888877744321 1 1223333332 44566776666665544322 1 11 0 0
Q ss_pred -----------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----------C-------
Q 003891 201 -----------------------------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN----------F------- 234 (788)
Q Consensus 201 -----------------------------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~----------~------- 234 (788)
.-+|..-|......+..++|.++++++++.-.+ .
T Consensus 272 ~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~ 351 (608)
T PF10345_consen 272 SIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASE 351 (608)
T ss_pred eEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHH
Confidence 112333355666677777888888888764111 0
Q ss_pred ---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 235 ---------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN---PT------YAEAYNNLGVLYRDAGSISLAIDAYE 293 (788)
Q Consensus 235 ---------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~---p~------~~~~~~~la~~~~~~g~~~eA~~~~~ 293 (788)
......++.+..-.+++.+|....+.+.... |. .+..++..|..+...|+.+.|..+|.
T Consensus 352 ~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 352 RIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 0134556677778999999999988877653 22 36788999999999999999999998
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0014 Score=70.71 Aligned_cols=224 Identities=14% Similarity=0.010 Sum_probs=148.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 003891 62 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 141 (788)
Q Consensus 62 ~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~ 141 (788)
..+..-..+..+.++-++...+|++++|+.+.+|..|+.- ......+|+++|+++++.....-. .......
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg----~s~~~~~--- 242 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLG----KSQFLQH--- 242 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhc----hhhhhhc---
Confidence 3445555678889999999999999999999999888752 234578899999998876443210 0000000
Q ss_pred hhhhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCH
Q 003891 142 KVKLEGDINQGVAYYKKALYYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--CAEACNNLGVIYKDRDNL 217 (788)
Q Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~ 217 (788)
.|.. -........ ...+...+|.+..+.|+.++|++.++..++.+|. +..++.++..++...+.|
T Consensus 243 ----~g~~-------~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Y 311 (539)
T PF04184_consen 243 ----HGHF-------WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAY 311 (539)
T ss_pred ----ccch-------hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCH
Confidence 1111 111111111 2345567888899999999999999999887764 466888999999999999
Q ss_pred HHHHHHHHHHHhh-CCCCHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHHhCCCCHHHHHHHHH---
Q 003891 218 DKAVECYQMALSI-KPNFSQSLNNLGVVYTV-QGK---------------MDAAAEMIEKAIAANPTYAEAYNNLGV--- 277 (788)
Q Consensus 218 ~eA~~~~~~al~~-~p~~~~~~~~la~~~~~-~g~---------------~~eA~~~l~kal~~~p~~~~~~~~la~--- 277 (788)
.++...+.+.-++ -|..+...+.-+.+..+ .++ -..|.+.+.+|++.+|.-+..+..+-.
T Consensus 312 ad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~Lil 391 (539)
T PF04184_consen 312 ADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLIL 391 (539)
T ss_pred HHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCC
Confidence 9999888886443 25556655555544322 111 234778899999999988776554322
Q ss_pred ---HHHHcCCHHHHHHHHHHHHhhCCCChhhH
Q 003891 278 ---LYRDAGSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 278 ---~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
-+.+.|+ .||+.+---.++.-.+-..+.
T Consensus 392 PPehilkrGD-SEAiaYAf~hL~hWk~veGAL 422 (539)
T PF04184_consen 392 PPEHILKRGD-SEAIAYAFFHLQHWKRVEGAL 422 (539)
T ss_pred ChHHhcCCCc-HHHHHHHHHHHHHHhcCHhHH
Confidence 2445565 788888777777665555554
|
The molecular function of this protein is uncertain. |
| >PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00083 Score=74.95 Aligned_cols=141 Identities=16% Similarity=0.076 Sum_probs=91.6
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC-CHH----HHHHHHHHHHHcCCCCCcEEEcCCcCCcH
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC-CDS----VRHRFLSTLEQLGLESLRVDLLPLILLNH 598 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~-~~~----~~~~l~~~~~~~gi~~~rv~~~~~~~~~~ 598 (788)
.+.|+|.||++..+++++.++-.+.-|...+..-||.+..+.. ++. ....+.++ + .+|..+.+++| +.
T Consensus 263 ~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er-----~-~~~g~v~~w~P-Q~ 335 (451)
T PLN02410 263 KNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSKI-----I-SGRGYIVKWAP-QK 335 (451)
T ss_pred CCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHHHh-----c-cCCeEEEccCC-HH
Confidence 4569999999999999999999999999999988998763311 111 12233332 2 26777789988 56
Q ss_pred HHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhh-CCcccc--cCCHHHHHHHHHHHhcC
Q 003891 599 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV-GLKHLI--AKNEDEYVQLALQLASD 675 (788)
Q Consensus 599 ~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~-gl~~~i--a~~~~~y~~~a~~l~~d 675 (788)
+.+. ...+..|+ ..+|-+|++||+++|||+|+++--. -....+..+... |+.--+ .-+.++..+...++..|
T Consensus 336 ~iL~-h~~v~~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~-DQ~~na~~~~~~~~~G~~~~~~~~~~~v~~av~~lm~~ 410 (451)
T PLN02410 336 EVLS-HPAVGGFW---SHCGWNSTLESIGEGVPMICKPFSS-DQKVNARYLECVWKIGIQVEGDLDRGAVERAVKRLMVE 410 (451)
T ss_pred HHhC-CCccCeee---ecCchhHHHHHHHcCCCEEeccccc-cCHHHHHHHHHHhCeeEEeCCcccHHHHHHHHHHHHcC
Confidence 6554 34455676 2477889999999999999988411 122333333221 332111 12666776666677766
Q ss_pred H
Q 003891 676 V 676 (788)
Q Consensus 676 ~ 676 (788)
+
T Consensus 411 ~ 411 (451)
T PLN02410 411 E 411 (451)
T ss_pred C
Confidence 5
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0083 Score=64.07 Aligned_cols=192 Identities=15% Similarity=0.064 Sum_probs=122.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHH-hhCCCcHHH
Q 003891 57 YAPAYYNLGVVYSELMQYDTALGCYEKAALE----RPMYAEAYCNMGVIYKN---RGDLESAIACYERCL-AVSPNFEIA 128 (788)
Q Consensus 57 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al-~~~p~~~~~ 128 (788)
.++...++-.+|....+|+.-+++.+..-.. -++...+.+.+|.++.+ .|+.++|+..+..++ ...+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4567778888899999999999999887665 44567788889999999 999999999999944 455666777
Q ss_pred HHHHHHHHHHhhhh--hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH
Q 003891 129 KNNMAIALTDLGTK--VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 206 (788)
Q Consensus 129 ~~~la~~l~~lg~~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 206 (788)
+...+.+|..+-.. +......++|+..|.++.+.+|+. ..-.|++.++...|...+....+++.. ..
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~----------~~ 288 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIG----------VK 288 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHH----------HH
Confidence 77777777665322 122345788888888888888543 333455555555554333222222211 11
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 003891 207 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 271 (788)
Q Consensus 207 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~ 271 (788)
+...+.+.|..+ .-.+...+..++.+..-.|++++|++++++++++.|.....
T Consensus 289 l~~llg~kg~~~------------~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l 341 (374)
T PF13281_consen 289 LSSLLGRKGSLE------------KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWEL 341 (374)
T ss_pred HHHHHHhhcccc------------ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhH
Confidence 111222222111 12233444556666777778888888888887777665443
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00038 Score=70.81 Aligned_cols=117 Identities=21% Similarity=0.159 Sum_probs=100.4
Q ss_pred HHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 8 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH----YAPAYYNLGVVYSELMQYDTALGCYEK 83 (788)
Q Consensus 8 kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~k 83 (788)
++|+.+|...+- ...|.-+-.-|+-|++.++|..|+.+|.+.|+..-. ++..|.+.+-+.+..|+|..|+.-..+
T Consensus 66 qslK~da~E~ep-~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~ 144 (390)
T KOG0551|consen 66 QSLKADAEEGEP-HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSA 144 (390)
T ss_pred HHhhhccccCCh-HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 445555443332 237888999999999999999999999999998433 467889999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Q 003891 84 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 125 (788)
Q Consensus 84 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 125 (788)
++..+|.+..+++.-+.|++.+.++.+|...++..++++.+.
T Consensus 145 al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 145 ALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 999999999999999999999999999999999998776543
|
|
| >PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00091 Score=75.96 Aligned_cols=163 Identities=15% Similarity=0.131 Sum_probs=107.6
Q ss_pred CeEEEecCCCC---cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 003891 526 FITFGSFNNLA---KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 602 (788)
Q Consensus 526 ~~~f~~~~~~~---K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 602 (788)
.++|.+|++.. +..++.++...+.+++.|.-.+|-.++.. .. .++ +++|.+.+++| +.+.+
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~-----~~--------~~~-p~Nv~i~~w~P-q~~lL- 360 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEV-----EA--------INL-PANVLTQKWFP-QRAVL- 360 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCc-----Cc--------ccC-CCceEEecCCC-HHHHh-
Confidence 46788887764 56789999999999999975445433221 00 234 48999999988 56555
Q ss_pred hcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc---CCHHHHHHHHHHHhcCHHHH
Q 003891 603 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVTAL 679 (788)
Q Consensus 603 ~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia---~~~~~y~~~a~~l~~d~~~~ 679 (788)
....+++|+ ..+|..|+.||+++|||+|.++--. -....+..+...|+...+- -+.++..+...++.+|+..+
T Consensus 361 ~hp~v~~fI---tHGG~~s~~Eal~~GvP~v~iP~~~-DQ~~Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~~~~y~ 436 (507)
T PHA03392 361 KHKNVKAFV---TQGGVQSTDEAIDALVPMVGLPMMG-DQFYNTNKYVELGIGRALDTVTVSAAQLVLAIVDVIENPKYR 436 (507)
T ss_pred cCCCCCEEE---ecCCcccHHHHHHcCCCEEECCCCc-cHHHHHHHHHHcCcEEEeccCCcCHHHHHHHHHHHhCCHHHH
Confidence 335688888 2477789999999999999988421 1223344455667654332 26788888888899998776
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 003891 680 ANLRMSLRDLMSKSPVCDGQNFALGLESTY 709 (788)
Q Consensus 680 ~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 709 (788)
+..++ +++.+...|.--.+..+..+|.+.
T Consensus 437 ~~a~~-ls~~~~~~p~~~~~~av~~iE~v~ 465 (507)
T PHA03392 437 KNLKE-LRHLIRHQPMTPLHKAIWYTEHVI 465 (507)
T ss_pred HHHHH-HHHHHHhCCCCHHHHHHHHHHHHH
Confidence 66544 333444444434466666666654
|
|
| >PLN03004 UDP-glycosyltransferase | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00074 Score=75.11 Aligned_cols=141 Identities=14% Similarity=0.110 Sum_probs=91.4
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC-------HH-HHHHHHHHHHHcCCCCCcEEEcCCcC
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-------DS-VRHRFLSTLEQLGLESLRVDLLPLIL 595 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~-------~~-~~~~l~~~~~~~gi~~~rv~~~~~~~ 595 (788)
.+.|+|.||++...+.++-++-.+.-|...+..-||.+..+... .. ....+.++. ....+++.+++|
T Consensus 269 ~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~-----~~~g~~v~~W~P 343 (451)
T PLN03004 269 EKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSRT-----EDKGMVVKSWAP 343 (451)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccccccchhhhCChHHHHhc-----cCCcEEEEeeCC
Confidence 45689999999999999999999999999999999988643110 00 112233332 214567778887
Q ss_pred CcHHHHHhcccccE--eecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHh-hhCCccccc------CCHHHHH
Q 003891 596 LNHDHMQAYSLMDI--SLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT-KVGLKHLIA------KNEDEYV 666 (788)
Q Consensus 596 ~~~~~~~~~~~~Dv--~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~-~~gl~~~ia------~~~~~y~ 666 (788)
+.+.+.- .++ |+ ..+|.+|++||+++|||+|+++-- .-....+..+. .+|+.--+. -+.++..
T Consensus 344 -Q~~iL~H---~~v~~Fv---TH~G~nS~lEal~~GVP~v~~P~~-~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~ 415 (451)
T PLN03004 344 -QVPVLNH---KAVGGFV---THCGWNSILEAVCAGVPMVAWPLY-AEQRFNRVMIVDEIKIAISMNESETGFVSSTEVE 415 (451)
T ss_pred -HHHHhCC---CccceEe---ccCcchHHHHHHHcCCCEEecccc-ccchhhHHHHHHHhCceEEecCCcCCccCHHHHH
Confidence 5665543 555 66 237788999999999999998831 11223333443 345442221 2566666
Q ss_pred HHHHHHhcCHH
Q 003891 667 QLALQLASDVT 677 (788)
Q Consensus 667 ~~a~~l~~d~~ 677 (788)
+...++..|++
T Consensus 416 ~av~~vm~~~~ 426 (451)
T PLN03004 416 KRVQEIIGECP 426 (451)
T ss_pred HHHHHHhcCHH
Confidence 66666666643
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.69 E-value=9.2e-05 Score=71.79 Aligned_cols=90 Identities=22% Similarity=0.226 Sum_probs=46.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 003891 174 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 253 (788)
Q Consensus 174 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e 253 (788)
|..++...+|..|+..|.+++.++|..+..+.+.+.++++.++++.+..-..+++++.|+....++.+|.++.....|++
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 44444444555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHH
Q 003891 254 AAEMIEKAIA 263 (788)
Q Consensus 254 A~~~l~kal~ 263 (788)
|+..++++..
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 5555555543
|
|
| >PLN02992 coniferyl-alcohol glucosyltransferase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0012 Score=74.00 Aligned_cols=154 Identities=17% Similarity=0.138 Sum_probs=97.3
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC---------------H----HHHHHHHHHHHHcCCC
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC---------------D----SVRHRFLSTLEQLGLE 584 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~---------------~----~~~~~l~~~~~~~gi~ 584 (788)
.+.|+|.||++...++++-++-.+.-|...|...||.+..+... + ..-+.+.++.+.
T Consensus 262 ~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~---- 337 (481)
T PLN02992 262 NESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHD---- 337 (481)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcC----
Confidence 45689999999999999999999999999999999998432100 0 111233433322
Q ss_pred CCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCC--CccCccchhHHH-hhhCCccccc--
Q 003891 585 SLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLL-TKVGLKHLIA-- 659 (788)
Q Consensus 585 ~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g--~~~~~r~~~~~l-~~~gl~~~ia-- 659 (788)
..+++.+++| +.+.+.- ..+..|+ ..+|.+|++||+++|||+|+++- +.+ ..+..+ ..+|+.-.+.
T Consensus 338 -rg~vv~~W~P-Q~~iL~h-~~vg~Fi---tH~G~nS~~Eal~~GVP~l~~P~~~DQ~---~na~~~~~~~g~gv~~~~~ 408 (481)
T PLN02992 338 -RGFVVPSWAP-QAEILAH-QAVGGFL---THCGWSSTLESVVGGVPMIAWPLFAEQN---MNAALLSDELGIAVRSDDP 408 (481)
T ss_pred -CCEEEeecCC-HHHHhCC-cccCeeE---ecCchhHHHHHHHcCCCEEecCccchhH---HHHHHHHHHhCeeEEecCC
Confidence 3467788887 5555543 3333455 24778899999999999999883 322 233344 3555543331
Q ss_pred ---CCHHHHHHHHHHHhcCHH------HHHHHHHHHHHHh
Q 003891 660 ---KNEDEYVQLALQLASDVT------ALANLRMSLRDLM 690 (788)
Q Consensus 660 ---~~~~~y~~~a~~l~~d~~------~~~~~r~~~~~~~ 690 (788)
-+.++..+...++..+++ .-+++|+.+++.+
T Consensus 409 ~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av 448 (481)
T PLN02992 409 KEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSL 448 (481)
T ss_pred CCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh
Confidence 256666666667766532 3344444455444
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.12 Score=55.65 Aligned_cols=291 Identities=15% Similarity=0.067 Sum_probs=175.1
Q ss_pred HHHHHHHHcCCCChhhHHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHh----CCC-----------C-H--------
Q 003891 4 ASYHKALSADPSYKPAAECLAIVLTDLGTSLK-LAGNTQDGIQKYYEALKI----DPH-----------Y-A-------- 58 (788)
Q Consensus 4 ~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~-~~g~~~~A~~~~~~al~~----~p~-----------~-~-------- 58 (788)
....+..+....++.-...+-..|..+-.+|+ ..|+...+...+++.-.. .+. + +
T Consensus 191 ~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpk 270 (629)
T KOG2300|consen 191 QRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPK 270 (629)
T ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccH
Confidence 34445555555555555556565655555544 457776666665543221 110 0 0
Q ss_pred ---HHHHHHH--HHHHHcCCHHHHHHHHHHHHHhCCC------C--------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 003891 59 ---PAYYNLG--VVYSELMQYDTALGCYEKAALERPM------Y--------AEAYCNMGVIYKNRGDLESAIACYERCL 119 (788)
Q Consensus 59 ---~~~~~lg--~~~~~~g~~~~A~~~~~kal~~~p~------~--------~~~~~~la~~~~~~g~~~~A~~~~~~al 119 (788)
.++..+- .--...|-+++|.++-++++..... . ...+-.+..|-.-.|++.+|++....+.
T Consensus 271 eqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~ 350 (629)
T KOG2300|consen 271 EQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMK 350 (629)
T ss_pred hhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 1111111 1112457788888888888764211 1 1234456677778899999999888877
Q ss_pred hhC---CCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003891 120 AVS---PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH-Y--ADAMYNLGVAYGEMLKFDMAIVFYELA 193 (788)
Q Consensus 120 ~~~---p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~~~la~~~~~~g~~~~A~~~~~~a 193 (788)
+.. |.-......-+.+..-+|......+.++.|...|..+.+.-.. + .....++|..|...++-+.-.+.++..
T Consensus 351 ~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i 430 (629)
T KOG2300|consen 351 NWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLI 430 (629)
T ss_pred HHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhc
Confidence 654 4422334444667777787777788999999999988876433 2 234567888888877766544444433
Q ss_pred HhcCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 194 FHFNPH-------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEK 260 (788)
Q Consensus 194 l~~~p~-------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~k 260 (788)
-..+.. ...+++..|...+.++++.||...+.+.++..... .-.+..++.+....|+..++.+...-
T Consensus 431 ~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrp 510 (629)
T KOG2300|consen 431 GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRP 510 (629)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccch
Confidence 222111 13466677777788888999988888888775211 22556677778888888888888777
Q ss_pred HHHhC---CCCHHH---HHHHHHHHHHcCC--HHHHHHHHHH
Q 003891 261 AIAAN---PTYAEA---YNNLGVLYRDAGS--ISLAIDAYEQ 294 (788)
Q Consensus 261 al~~~---p~~~~~---~~~la~~~~~~g~--~~eA~~~~~~ 294 (788)
++++. |+.+.. ...+-.+|...|+ .+...+.|.+
T Consensus 511 amqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 511 AMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 77664 333322 2234556666666 4444444443
|
|
| >PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00097 Score=75.00 Aligned_cols=104 Identities=13% Similarity=0.095 Sum_probs=75.2
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCH----HHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCD----SVRHRFLSTLEQLGLESLRVDLLPLILLNHD 599 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~----~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~ 599 (788)
.+.|+|.||++...+.++.++-.+.-|...+...||.++.+.... .....+.++.. ...+++.+++| +.+
T Consensus 282 ~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~-----~~g~~v~~w~P-Q~~ 355 (477)
T PLN02863 282 DHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDRVA-----GRGLVIRGWAP-QVA 355 (477)
T ss_pred CCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHHhc-----cCCEEecCCCC-HHH
Confidence 356899999999999999999999999999998999887432110 11123333322 24577778987 555
Q ss_pred HHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCC
Q 003891 600 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 637 (788)
Q Consensus 600 ~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g 637 (788)
.+. ...+++|+ ..+|.+|++||+++|||+|+++-
T Consensus 356 vL~-h~~v~~fv---tH~G~nS~~Eal~~GvP~l~~P~ 389 (477)
T PLN02863 356 ILS-HRAVGAFL---THCGWNSVLEGLVAGVPMLAWPM 389 (477)
T ss_pred Hhc-CCCcCeEE---ecCCchHHHHHHHcCCCEEeCCc
Confidence 554 34577887 24788899999999999999883
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.047 Score=63.11 Aligned_cols=234 Identities=15% Similarity=0.023 Sum_probs=154.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HH
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKIDPH---------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AE 93 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~-----~~ 93 (788)
...+.....+.++.+|..+..++...-+. .++..-..|.+....|+.++|++..+.++..-|.+ ..
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 33456667789999999999887765433 23455667888899999999999999999877653 46
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCH--HHHHHHHHHHH----HhCCCCH
Q 003891 94 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI--NQGVAYYKKAL----YYNWHYA 167 (788)
Q Consensus 94 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~--~~A~~~~~~al----~~~p~~~ 167 (788)
++..+|.+..-.|++++|..+...+.+....+. .++....+....+.+...+|+. .+....+...- ...|...
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~-~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~ 577 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHD-VYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHE 577 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccch
Confidence 788899999999999999999999988865544 3333345556667777778832 33333333222 2233333
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCC--H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HH-
Q 003891 168 DAMYNLGVAYGEMLKFDMAIVFYELAFHF----NPHC--A-EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQ- 236 (788)
Q Consensus 168 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~--~-~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~- 236 (788)
......+.++...-+++.+.....+.++. .|.. . -.++.++.++...|++++|...+.+....-.+. ..
T Consensus 578 f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 578 FLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 33333333333333366666665555544 2322 2 233589999999999999999998887653222 11
Q ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 237 ---SLNNLGVVYTVQGKMDAAAEMIEKAI 262 (788)
Q Consensus 237 ---~~~~la~~~~~~g~~~eA~~~l~kal 262 (788)
++.-.......+|+.++|.....+..
T Consensus 658 ~a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 658 LAAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 22222233456899999988888743
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=7e-05 Score=80.11 Aligned_cols=110 Identities=20% Similarity=0.225 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~ 105 (788)
.+-..+...+..++|+.|+..|.++++++|+++..+.+.+..+.+.+++..|+.-+.++++.+|....+|+..|.+....
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence 35556777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 003891 106 GDLESAIACYERCLAVSPNFEIAKNNMAIA 135 (788)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 135 (788)
+++.+|...|++...+.|+.+.+...+..+
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 999999999999999999998665544433
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.14 Score=54.83 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=30.6
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 245 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 294 (788)
Q Consensus 245 ~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 294 (788)
++.+|+|.++.-+-.=..++.| .+.++..+|.++...++|++|..++..
T Consensus 472 Lysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 4456666666666555566666 566666666666666666666666554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PLN02764 glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0013 Score=73.12 Aligned_cols=156 Identities=10% Similarity=0.011 Sum_probs=95.9
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCH----HHHHHHHHHHHHcCCCCCcEEEcCCcCCcH
Q 003891 523 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCD----SVRHRFLSTLEQLGLESLRVDLLPLILLNH 598 (788)
Q Consensus 523 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~----~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~ 598 (788)
+.+.|+|.||++...++++-+.-.+.=|...-.--+|++..+.+.+ .+.+.+..+.+..| +++.+++| +.
T Consensus 255 ~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG-----~v~~~W~P-Q~ 328 (453)
T PLN02764 255 EPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRG-----VVWGGWVQ-QP 328 (453)
T ss_pred CCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccCC-----cEEeCCCC-HH
Confidence 4567999999999898887666666666666666888886432111 12233443332222 56668887 56
Q ss_pred HHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHH-hhhCCcccc------cCCHHHHHHHHHH
Q 003891 599 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL-TKVGLKHLI------AKNEDEYVQLALQ 671 (788)
Q Consensus 599 ~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l-~~~gl~~~i------a~~~~~y~~~a~~ 671 (788)
+.+. ...++.|+ ..+|.+|++||+++|||+|+++-- ......+.++ ..+|+.--+ .-+.++..+...+
T Consensus 329 ~vL~-h~~v~~Fv---tH~G~nS~~Eal~~GVP~l~~P~~-~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~ 403 (453)
T PLN02764 329 LILS-HPSVGCFV---SHCGFGSMWESLLSDCQIVLVPQL-GDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINS 403 (453)
T ss_pred HHhc-CcccCeEE---ecCCchHHHHHHHcCCCEEeCCcc-cchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHH
Confidence 6553 35566777 247888999999999999999842 1122333444 234433111 1266777777777
Q ss_pred HhcCH-HHHHHHHHHHHHH
Q 003891 672 LASDV-TALANLRMSLRDL 689 (788)
Q Consensus 672 l~~d~-~~~~~~r~~~~~~ 689 (788)
+..+. +..+++|+++++.
T Consensus 404 vm~~~~~~g~~~r~~a~~~ 422 (453)
T PLN02764 404 VMKRDSEIGNLVKKNHTKW 422 (453)
T ss_pred HhcCCchhHHHHHHHHHHH
Confidence 77665 4556666666543
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00099 Score=64.91 Aligned_cols=106 Identities=15% Similarity=0.097 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003891 203 ACNNLGVIYKDRDNLDKAVECYQMALSI--------KPNF----------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 264 (788)
Q Consensus 203 ~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~eA~~~l~kal~~ 264 (788)
++..-|+-+++.|+|++|...|..|+.. .|.. ...+.|++.|+...|+|-++++.....+..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 4444555555555555555555555422 3333 336889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHh
Q 003891 265 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 308 (788)
Q Consensus 265 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 308 (788)
.|.+..+++..|.+....=+..+|..-|.++++++|.-..+...
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsr 303 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSR 303 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence 99999999999999999999999999999999999986665443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.07 Score=58.21 Aligned_cols=61 Identities=7% Similarity=0.038 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 87 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~ 87 (788)
.|+.+-..+..+ .+++..+.|++.+...|..+.+|.......+..++|+.-..+|.+++..
T Consensus 22 sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 22 SWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 355554444443 7777777777777777777777777777777777777777777777654
|
|
| >PLN03007 UDP-glucosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0014 Score=74.13 Aligned_cols=103 Identities=15% Similarity=0.025 Sum_probs=70.4
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC-H---HHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-D---SVRHRFLSTLEQLGLESLRVDLLPLILLNHD 599 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~-~---~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~ 599 (788)
++.++|.||++...+++.-+.-.+.-|...+...||.++.+... + ...+.+.++. .+..+++.+++| +.+
T Consensus 284 ~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~-----~~~g~~v~~w~P-Q~~ 357 (482)
T PLN03007 284 PDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERT-----KGKGLIIRGWAP-QVL 357 (482)
T ss_pred CCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHh-----ccCCEEEecCCC-HHH
Confidence 45689999999988877777666777888888889988753211 0 1112333322 135778889987 555
Q ss_pred HHHhcccccEeecCCCCCCchhHHHHhhhCCceeecC
Q 003891 600 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA 636 (788)
Q Consensus 600 ~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~ 636 (788)
.+.- ..+..|+ ..+|.+|++||+++|||+|+++
T Consensus 358 iL~h-~~v~~fv---tH~G~nS~~Eal~~GVP~v~~P 390 (482)
T PLN03007 358 ILDH-QATGGFV---THCGWNSLLEGVAAGLPMVTWP 390 (482)
T ss_pred Hhcc-Cccceee---ecCcchHHHHHHHcCCCeeecc
Confidence 5543 2234466 2477889999999999999988
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0014 Score=68.52 Aligned_cols=129 Identities=10% Similarity=0.021 Sum_probs=106.7
Q ss_pred hhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 003891 141 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE-MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 219 (788)
Q Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e 219 (788)
+...+.+..+.|...|.++.+..+....+|...|.+.+. .++.+.|.++|+.+++..|.+...|......+...++.+.
T Consensus 9 ~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~ 88 (280)
T PF05843_consen 9 RFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINN 88 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHH
Confidence 334444568999999999997666678899999999777 5666669999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 003891 220 AVECYQMALSIKPNFS---QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 269 (788)
Q Consensus 220 A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~ 269 (788)
|..+|++++..-+... .+|......-.+.|+.+...+..+++.+..|+..
T Consensus 89 aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 89 ARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999998866654 5888888888899999999999999999988743
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.023 Score=63.91 Aligned_cols=151 Identities=16% Similarity=0.073 Sum_probs=92.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH-H------HHHHHHHHH----HcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 003891 146 EGDINQGVAYYKKALYYNWHYAD-A------MYNLGVAYG----EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 214 (788)
Q Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~-~------~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 214 (788)
.|+-+.+++.+.++.+...-... + |+.....+. .....+.|.+.++...+..|+..-.++..|.++...
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~ 280 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLK 280 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 46777777777777652211111 1 111111111 234566777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCH----
Q 003891 215 DNLDKAVECYQMALSIKPNFS----QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-AEAYNNLGVLYRDAGSI---- 285 (788)
Q Consensus 215 g~~~eA~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-~~~~~~la~~~~~~g~~---- 285 (788)
|+.++|++.|++++....... -.++.+++++..+.+|++|.+++.+..+.+.-. .-..+..|.++...|+.
T Consensus 281 g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~ 360 (468)
T PF10300_consen 281 GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAK 360 (468)
T ss_pred cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhh
Confidence 777777777777764332222 256677777777777777777777777765443 33445566777777777
Q ss_pred ---HHHHHHHHHHH
Q 003891 286 ---SLAIDAYEQCL 296 (788)
Q Consensus 286 ---~eA~~~~~~al 296 (788)
++|.++|+++-
T Consensus 361 ~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 361 EHKKEAEELFRKVP 374 (468)
T ss_pred hhHHHHHHHHHHHH
Confidence 55555555543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0012 Score=64.38 Aligned_cols=104 Identities=20% Similarity=0.201 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003891 25 IVLTDLGTSLKLAGNTQDGIQKYYEALKI--------DPHY----------APAYYNLGVVYSELMQYDTALGCYEKAAL 86 (788)
Q Consensus 25 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~kal~ 86 (788)
.++...|+-++..|+|.+|...|+.|+.. .|.. ...+.+.+.|+...|+|-++++.....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 45778899999999999999999998753 3443 44678999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHH
Q 003891 87 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 128 (788)
Q Consensus 87 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 128 (788)
..|.+..+|+..|.+....=+..+|..-|.++++++|.....
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 999999999999999999999999999999999999986543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.18 Score=56.05 Aligned_cols=280 Identities=11% Similarity=0.024 Sum_probs=161.7
Q ss_pred HHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHH
Q 003891 4 ASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY-SELMQYDTALGCYE 82 (788)
Q Consensus 4 ~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~ 82 (788)
..|...|...|--... |...+...++.|..+++.+.|++++.--|-....|...-... ...|+.+.-...|+
T Consensus 66 ~~y~~fL~kyPl~~gy-------W~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 66 EVYDIFLSKYPLCYGY-------WKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred HHHHHHHhhCccHHHH-------HHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 4555666666654444 444556667778899999999999998888777776554333 34567777777888
Q ss_pred HHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHH----HH-----------HHHHHh----h
Q 003891 83 KAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN----MA-----------IALTDL----G 140 (788)
Q Consensus 83 kal~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----la-----------~~l~~l----g 140 (788)
+|......+ ...|-.+-..-..++++..-...|++.++.--..-..++. .. ..+..+ .
T Consensus 139 ~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~ 218 (577)
T KOG1258|consen 139 RAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVA 218 (577)
T ss_pred HHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHH
Confidence 887754432 2334334444455556666666666655441110000000 00 000000 0
Q ss_pred --------------------hhhhhcCCHHHHHHHHHHHHHh-----------------------------CCC---CHH
Q 003891 141 --------------------TKVKLEGDINQGVAYYKKALYY-----------------------------NWH---YAD 168 (788)
Q Consensus 141 --------------------~~~~~~g~~~~A~~~~~~al~~-----------------------------~p~---~~~ 168 (788)
.+-...+.++++...+.+...+ .|. ...
T Consensus 219 ~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~ 298 (577)
T KOG1258|consen 219 ERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLK 298 (577)
T ss_pred hhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHH
Confidence 0000112223333222222211 111 122
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTV 247 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~la~~~~~ 247 (788)
.|......-...|+++...-.|++++--.....+.|...+......|+.+-|...+..+.++. +..+.+...-+..-..
T Consensus 299 nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~ 378 (577)
T KOG1258|consen 299 NWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEES 378 (577)
T ss_pred HHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHh
Confidence 344555555667777777777777776666667777777777777777777777777776653 4556666666666667
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 248 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 290 (788)
Q Consensus 248 ~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~ 290 (788)
.|++..|..++++..+..|+...+-.........+|+.+.+..
T Consensus 379 ~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 379 NGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred hccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 7777777777777777667776666666666777777776663
|
|
| >PLN02210 UDP-glucosyl transferase | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0014 Score=73.44 Aligned_cols=139 Identities=13% Similarity=0.090 Sum_probs=89.5
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 603 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 603 (788)
+..|+|.||++..+..++.++..+.-|...+...||.++..... .....+.++.. .+|..+.+++| +.+.+.-
T Consensus 268 ~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~~-~~~~~~~~~~~-----~~~g~v~~w~P-Q~~iL~h 340 (456)
T PLN02210 268 RSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEKA-QNVQVLQEMVK-----EGQGVVLEWSP-QEKILSH 340 (456)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCccc-cchhhHHhhcc-----CCCeEEEecCC-HHHHhcC
Confidence 45689999999999999999999999999999888887643211 11122222211 25556678887 5655543
Q ss_pred cccccEeecCCCCCCchhHHHHhhhCCceeecCC--CccCccchhHHHhh-hCCccccc-------CCHHHHHHHHHHHh
Q 003891 604 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLLTK-VGLKHLIA-------KNEDEYVQLALQLA 673 (788)
Q Consensus 604 ~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g--~~~~~r~~~~~l~~-~gl~~~ia-------~~~~~y~~~a~~l~ 673 (788)
..+..|| ..+|.+|++||+++|||+|+++- +.+ ..+.++.. +|+.-.+. -+.++..+...++.
T Consensus 341 -~~vg~Fi---tH~G~nS~~Eai~~GVP~v~~P~~~DQ~---~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m 413 (456)
T PLN02210 341 -MAISCFV---THCGWNSTIETVVAGVPVVAYPSWTDQP---IDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVT 413 (456)
T ss_pred -cCcCeEE---eeCCcccHHHHHHcCCCEEecccccccH---HHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHh
Confidence 3345776 23777899999999999999984 322 33444433 44432221 25566666666666
Q ss_pred cCH
Q 003891 674 SDV 676 (788)
Q Consensus 674 ~d~ 676 (788)
.++
T Consensus 414 ~~~ 416 (456)
T PLN02210 414 EGP 416 (456)
T ss_pred cCc
Confidence 554
|
|
| >cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0028 Score=70.43 Aligned_cols=141 Identities=9% Similarity=0.020 Sum_probs=90.4
Q ss_pred CCCeEEEecCCCCc-CCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 003891 524 NGFITFGSFNNLAK-ITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 602 (788)
Q Consensus 524 ~~~~~f~~~~~~~K-~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 602 (788)
+..++|.++++... ....+.+...+.+...+.-.++..|..... . ..+ +++|.+.++++ ..++
T Consensus 238 ~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~----~--------~~~-~~~v~~~~~~p-~~~l-- 301 (401)
T cd03784 238 GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGLG----A--------EDL-PDNVRVVDFVP-HDWL-- 301 (401)
T ss_pred CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCcccc----c--------cCC-CCceEEeCCCC-HHHH--
Confidence 45677778877643 445677777777777655555555543111 0 123 47899999876 4444
Q ss_pred hcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC---CHHHHHHHHHHHhcCHHHH
Q 003891 603 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTAL 679 (788)
Q Consensus 603 ~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~~ 679 (788)
+..||+++ ..+|..|+.|||++|||+|.++-.. -.-..+..+...|..-.+.. +.++..+...++.+++ .+
T Consensus 302 -l~~~d~~I---~hgG~~t~~eal~~GvP~v~~P~~~-dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~~-~~ 375 (401)
T cd03784 302 -LPRCAAVV---HHGGAGTTAAALRAGVPQLVVPFFG-DQPFWAARVAELGAGPALDPRELTAERLAAALRRLLDPP-SR 375 (401)
T ss_pred -hhhhheee---ecCCchhHHHHHHcCCCEEeeCCCC-CcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCHH-HH
Confidence 45599999 3477789999999999999987432 13334556677776654433 6777777777777754 44
Q ss_pred HHHHHHH
Q 003891 680 ANLRMSL 686 (788)
Q Consensus 680 ~~~r~~~ 686 (788)
++.++..
T Consensus 376 ~~~~~~~ 382 (401)
T cd03784 376 RRAAALL 382 (401)
T ss_pred HHHHHHH
Confidence 4444433
|
Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics. |
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0095 Score=58.96 Aligned_cols=232 Identities=14% Similarity=0.120 Sum_probs=131.3
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH-HHHH
Q 003891 36 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM-QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE-SAIA 113 (788)
Q Consensus 36 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~-~A~~ 113 (788)
+...-..|+++-..++.++|.+..+|...-.++..++ +..+-++++.+.++.+|++.++|...-.+....|+.. .-++
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELe 134 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELE 134 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHH
Confidence 3345566777777777777777666666555554433 4566666777777777777777777666666666666 6666
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC-----ChHHHH
Q 003891 114 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE-ML-----KFDMAI 187 (788)
Q Consensus 114 ~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g-----~~~~A~ 187 (788)
..++++..+.++-.+|.....++...+ .++.-+.+..+.++.+-.+-.+|...-.+... .| ..+.-+
T Consensus 135 f~~~~l~~DaKNYHaWshRqW~~r~F~-------~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El 207 (318)
T KOG0530|consen 135 FTKLMLDDDAKNYHAWSHRQWVLRFFK-------DYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELEREL 207 (318)
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHh-------hHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHH
Confidence 677777766666666666665555543 56666677777776665555554432222111 11 223345
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH-cC--CHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHH------cCCHH---HH
Q 003891 188 VFYELAFHFNPHCAEACNNLGVIYKD-RD--NLDKAVECYQMAL-SIKPNFSQSLNNLGVVYTV------QGKMD---AA 254 (788)
Q Consensus 188 ~~~~~al~~~p~~~~~~~~la~~~~~-~g--~~~eA~~~~~~al-~~~p~~~~~~~~la~~~~~------~g~~~---eA 254 (788)
.+..+.+...|++..+|+.|.-++.. .| .+.+-.......+ +.....+..+..+..+|.. .+.-+ +|
T Consensus 208 ~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a 287 (318)
T KOG0530|consen 208 NYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKA 287 (318)
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 55666666777777777776666654 33 2333333333333 3333445555445444421 12222 46
Q ss_pred HHHHHHHH-HhCCCCHHHHHH
Q 003891 255 AEMIEKAI-AANPTYAEAYNN 274 (788)
Q Consensus 255 ~~~l~kal-~~~p~~~~~~~~ 274 (788)
.+.|+..- +.+|-....|..
T Consensus 288 ~~ly~~La~~~DpiR~nyW~~ 308 (318)
T KOG0530|consen 288 VKLYEDLAIKVDPIRKNYWRH 308 (318)
T ss_pred HHHHHHHhhccCcHHHHHHHH
Confidence 66666554 556655554443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00019 Score=51.73 Aligned_cols=39 Identities=28% Similarity=0.452 Sum_probs=17.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003891 238 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 276 (788)
Q Consensus 238 ~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la 276 (788)
+..+|.+|..+|++++|++.|+++++.+|+++.++..+|
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 344444444444444444444444444444444444443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.057 Score=56.54 Aligned_cols=122 Identities=20% Similarity=0.074 Sum_probs=92.4
Q ss_pred HHHHHHHHHHcC-CCChhhHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHh----CCC----------CHHHHHHHH
Q 003891 2 LVASYHKALSAD-PSYKPAAECLAIVLTDLGTSLKLAG-NTQDGIQKYYEALKI----DPH----------YAPAYYNLG 65 (788)
Q Consensus 2 Ai~~~~kaL~~~-P~~~~a~~~la~~l~~lg~~~~~~g-~~~~A~~~~~~al~~----~p~----------~~~~~~~lg 65 (788)
|..++.|+=... ..++.....++.++++.|...+..+ ++++|..+++++.+. .+. ...++..++
T Consensus 12 A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La 91 (278)
T PF08631_consen 12 AEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLA 91 (278)
T ss_pred HHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHH
Confidence 566677776655 5566677789999999999999999 999999999999887 211 144677888
Q ss_pred HHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC
Q 003891 66 VVYSELMQYD---TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 123 (788)
Q Consensus 66 ~~~~~~g~~~---~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 123 (788)
.+|...+.++ +|....+.+-...|+.+..+...-.+..+.++.+++.+.+.+++...+
T Consensus 92 ~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 92 NAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 8888877654 455556666666788777776666666668889999999998887644
|
It is also involved in sporulation []. |
| >COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0028 Score=70.49 Aligned_cols=165 Identities=17% Similarity=0.082 Sum_probs=116.8
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 003891 525 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 602 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 602 (788)
..+.||.++|+ .|.-+-++++...++... .+|+++|.| +......++...+.+- +++.+.-... ..-...
T Consensus 293 ~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~--~~~vilG~g--d~~le~~~~~la~~~~---~~~~~~i~~~-~~la~~ 364 (487)
T COG0297 293 PGPLFGFVSRLTAQKGLDLLLEAIDELLEQG--WQLVLLGTG--DPELEEALRALASRHP---GRVLVVIGYD-EPLAHL 364 (487)
T ss_pred CCcEEEEeeccccccchhHHHHHHHHHHHhC--ceEEEEecC--cHHHHHHHHHHHHhcC---ceEEEEeeec-HHHHHH
Confidence 45789999988 999999999999999876 899999987 5567777777777663 3554443332 344456
Q ss_pred hcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc------------------CCHH
Q 003891 603 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA------------------KNED 663 (788)
Q Consensus 603 ~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia------------------~~~~ 663 (788)
.|..+|++|=|+-| ..|.|-++||..|++.|. .++| ||.+.|. .+++
T Consensus 365 i~agaD~~lmPSrfEPcGL~ql~amryGtvpIv-------~~tG-------GLadTV~~~~~~~~~~~gtGf~f~~~~~~ 430 (487)
T COG0297 365 IYAGADVILMPSRFEPCGLTQLYAMRYGTLPIV-------RETG-------GLADTVVDRNEWLIQGVGTGFLFLQTNPD 430 (487)
T ss_pred HHhcCCEEEeCCcCcCCcHHHHHHHHcCCcceE-------cccC-------CccceecCccchhccCceeEEEEecCCHH
Confidence 78999999999998 779999999999965553 3444 5544443 2444
Q ss_pred HH---HHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 003891 664 EY---VQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 715 (788)
Q Consensus 664 ~y---~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 715 (788)
++ +.+|+.+..+++.. +|.-.+..|. ..|+++.-+....+.|+.+...
T Consensus 431 ~l~~al~rA~~~y~~~~~~--w~~~~~~~m~--~d~sw~~sa~~y~~lY~~~~~~ 481 (487)
T COG0297 431 HLANALRRALVLYRAPPLL--WRKVQPNAMG--ADFSWDLSAKEYVELYKPLLSK 481 (487)
T ss_pred HHHHHHHHHHHHhhCCHHH--HHHHHHhhcc--cccCchhHHHHHHHHHHHHhcc
Confidence 44 34566666666542 3333334443 5588999999999999987653
|
|
| >PLN02167 UDP-glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.002 Score=72.74 Aligned_cols=103 Identities=17% Similarity=0.130 Sum_probs=72.6
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC-----HHHHHHHHHHHHHcCCCCCcEEEcCCcCCcH
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DSVRHRFLSTLEQLGLESLRVDLLPLILLNH 598 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~-----~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~ 598 (788)
.+.|+|.||++...+.++.++-.+.-|...+..-||.++.+... ....+.+.++. . +|..+.+++| +.
T Consensus 279 ~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er~-----~-~rg~v~~w~P-Q~ 351 (475)
T PLN02167 279 ESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMDRV-----M-GRGLVCGWAP-QV 351 (475)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEecCcccccchhhhCChHHHHHh-----c-cCeeeeccCC-HH
Confidence 35688999999888899889888999999999888887643111 01122333332 1 4566678887 55
Q ss_pred HHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCC
Q 003891 599 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 637 (788)
Q Consensus 599 ~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g 637 (788)
+.+ ....++.|| ..+|.+|++||+++|||+|+++-
T Consensus 352 ~iL-~h~~vg~fv---tH~G~nS~~Eal~~GvP~l~~P~ 386 (475)
T PLN02167 352 EIL-AHKAIGGFV---SHCGWNSVLESLWFGVPIATWPM 386 (475)
T ss_pred HHh-cCcccCeEE---eeCCcccHHHHHHcCCCEEeccc
Confidence 555 334466776 24778899999999999999883
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.018 Score=57.08 Aligned_cols=247 Identities=15% Similarity=0.146 Sum_probs=179.9
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHH
Q 003891 38 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIACYE 116 (788)
Q Consensus 38 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~ 116 (788)
.+|.++..+|+..+..+.. -..|+++-+.++.++|.+..+|...-.++..++ +..+-++++.
T Consensus 40 e~fr~~m~YfRAI~~~~E~-----------------S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~ 102 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKNEK-----------------SPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLD 102 (318)
T ss_pred hhHHHHHHHHHHHHhcccc-----------------CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4567777777776655543 466778888899999999999988887777664 6788899999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003891 117 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN-QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 195 (788)
Q Consensus 117 ~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 195 (788)
+.++-+|++-..|...-.+...++ +.. .-++..+.++..+.++..+|...-.+...-+.++.-+.+..+.++
T Consensus 103 eI~e~npKNYQvWHHRr~ive~l~-------d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle 175 (318)
T KOG0530|consen 103 EIIEDNPKNYQVWHHRRVIVELLG-------DPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLE 175 (318)
T ss_pred HHHHhCccchhHHHHHHHHHHHhc-------CcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999888777766655 555 678889999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cC--CHHHHHHHHHHHH-HhC
Q 003891 196 FNPHCAEACNNLGVIYKD-RD-----NLDKAVECYQMALSIKPNFSQSLNNLGVVYTV-QG--KMDAAAEMIEKAI-AAN 265 (788)
Q Consensus 196 ~~p~~~~~~~~la~~~~~-~g-----~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~-~g--~~~eA~~~l~kal-~~~ 265 (788)
.+-.+-.+|+..-.+... .| ..+.-+.+..+.+...|++..+|..|.-++.. .| .+.+-.......+ ...
T Consensus 176 ~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~ 255 (318)
T KOG0530|consen 176 EDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLP 255 (318)
T ss_pred HhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccC
Confidence 877666666543222222 11 24556778889999999999999999888876 44 2344445555544 334
Q ss_pred CCCHHHHHHHHHHHH------HcCCHH---HHHHHHHHHH-hhCCCChhhHHh
Q 003891 266 PTYAEAYNNLGVLYR------DAGSIS---LAIDAYEQCL-KIDPDSRNAGQN 308 (788)
Q Consensus 266 p~~~~~~~~la~~~~------~~g~~~---eA~~~~~~al-~l~p~~~~a~~~ 308 (788)
...+..+-.+..+|. +.+.-+ +|.+.|+..- +.+|=..+.+..
T Consensus 256 ~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~DpiR~nyW~~ 308 (318)
T KOG0530|consen 256 KRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYEDLAIKVDPIRKNYWRH 308 (318)
T ss_pred CCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 455666666666662 223334 5777777654 777765555443
|
|
| >PLN02554 UDP-glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0046 Score=69.94 Aligned_cols=103 Identities=14% Similarity=0.072 Sum_probs=73.9
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC-----------C-HH-HHHHHHHHHHHcCCCCCcEEE
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC-----------C-DS-VRHRFLSTLEQLGLESLRVDL 590 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~-----------~-~~-~~~~l~~~~~~~gi~~~rv~~ 590 (788)
.+.|+|.||++...++++.++..+.-|...+.-.||.+..+.. + .. ....+.++. .+|+.+
T Consensus 273 ~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~------~~~g~v 346 (481)
T PLN02554 273 PKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRT------KDIGKV 346 (481)
T ss_pred CCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHh------ccCceE
Confidence 3458899999999999999999999999999988888754210 0 00 112333222 267777
Q ss_pred cCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCC
Q 003891 591 LPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 637 (788)
Q Consensus 591 ~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g 637 (788)
.+++| +.+.+. ...++.|+ ..+|-+|++||+++|||+|+++-
T Consensus 347 ~~W~P-Q~~iL~-H~~v~~Fv---tH~G~nS~~Ea~~~GVP~l~~P~ 388 (481)
T PLN02554 347 IGWAP-QVAVLA-KPAIGGFV---THCGWNSILESLWFGVPMAAWPL 388 (481)
T ss_pred EeeCC-HHHHhC-CcccCccc---ccCccchHHHHHHcCCCEEecCc
Confidence 89987 566553 35566676 24778899999999999999983
|
|
| >PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00054 Score=78.57 Aligned_cols=162 Identities=16% Similarity=0.214 Sum_probs=90.1
Q ss_pred CCCeEEEecCCCCcCCHH-HHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 003891 524 NGFITFGSFNNLAKITPK-VLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 602 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~-~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 602 (788)
...++|-||++..+..|+ ..+..++.+++.|...||-..+. .... + ++.+.+..++| +.+.++
T Consensus 275 ~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~-----~~~~---------l-~~n~~~~~W~P-Q~~lL~ 338 (500)
T PF00201_consen 275 KKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGE-----PPEN---------L-PKNVLIVKWLP-QNDLLA 338 (500)
T ss_dssp TTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCS-----HGCH---------H-HTTEEEESS---HHHHHT
T ss_pred CCCEEEEecCcccchhHHHHHHHHHHHHhhCCCccccccccc-----cccc---------c-cceEEEecccc-chhhhh
Confidence 456889999988665554 48889999999999666655431 1111 1 25678889998 677765
Q ss_pred hcccccEeecCCCCCCchhHHHHhhhCCceeecC--CCccCccchhHHHhhhCCccccc---CCHHHHHHHHHHHhcCHH
Q 003891 603 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVT 677 (788)
Q Consensus 603 ~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~~~l~~~gl~~~ia---~~~~~y~~~a~~l~~d~~ 677 (788)
...+++|+ ..+|.+|+.||+++|||+|+++ |+.+ ..+..+...|....+- -+.++..+...++.+|+.
T Consensus 339 -hp~v~~fi---tHgG~~s~~Ea~~~gvP~l~~P~~~DQ~---~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~~ 411 (500)
T PF00201_consen 339 -HPRVKLFI---THGGLNSTQEALYHGVPMLGIPLFGDQP---RNAARVEEKGVGVVLDKNDLTEEELRAAIREVLENPS 411 (500)
T ss_dssp -STTEEEEE---ES--HHHHHHHHHCT--EEE-GCSTTHH---HHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHSHH
T ss_pred -cccceeee---eccccchhhhhhhccCCccCCCCcccCC---ccceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhhhH
Confidence 45577787 1377779999999999999988 4432 2345566667654332 267888888889999987
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 003891 678 ALANLRMSLRDLMSKSPVCDGQNFALGLESTY 709 (788)
Q Consensus 678 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 709 (788)
.++..++ ++..+...|.--.++.+..+|-+.
T Consensus 412 y~~~a~~-ls~~~~~~p~~p~~~~~~~ie~v~ 442 (500)
T PF00201_consen 412 YKENAKR-LSSLFRDRPISPLERAVWWIEYVA 442 (500)
T ss_dssp HHHHHHH-HHHTTT------------------
T ss_pred HHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHH
Confidence 5555433 333444334333344445555443
|
This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A .... |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00027 Score=50.88 Aligned_cols=40 Identities=28% Similarity=0.265 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003891 60 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 99 (788)
Q Consensus 60 ~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la 99 (788)
+++.+|..|...|++++|++.|+++++.+|+++.++..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4445555555555555555555555555555555554444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.011 Score=65.78 Aligned_cols=174 Identities=12% Similarity=0.115 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH------HHHh----CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 003891 25 IVLTDLGTSLKLAGNTQDGIQKYYE------ALKI----DPHYA-PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 93 (788)
Q Consensus 25 ~~l~~lg~~~~~~g~~~~A~~~~~~------al~~----~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~ 93 (788)
+.|-..|..+.+..++++|+++|++ ++++ .|... ..-...|.-+...|+++.|+..|-++-
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~-------- 733 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-------- 733 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh--------
Confidence 3344455666666667777777654 2222 12211 112233555556666666666665431
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 003891 94 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL 173 (788)
Q Consensus 94 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 173 (788)
....-........++.+|+..++........ ...|-.++.-|...|+++-|.+.|.++- .....
T Consensus 734 ~~~kaieaai~akew~kai~ildniqdqk~~--------s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~da 797 (1636)
T KOG3616|consen 734 CLIKAIEAAIGAKEWKKAISILDNIQDQKTA--------SGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDA 797 (1636)
T ss_pred hHHHHHHHHhhhhhhhhhHhHHHHhhhhccc--------cccchHHHHHhccchhHHHHHHHHHhcc--------hhHHH
Confidence 1122222333444555555555544332211 1123334445555667777766665542 12223
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 174 GVAYGEMLKFDMAIVFYELAFHFNPH-CAEACNNLGVIYKDRDNLDKAVECY 224 (788)
Q Consensus 174 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~ 224 (788)
..+|.+.|++++|.++-+++.. |. ....|...+.-+-+.|++.+|.++|
T Consensus 798 i~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 798 IDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 3455666677666666555432 22 2334444555555556655555444
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.052 Score=61.14 Aligned_cols=162 Identities=13% Similarity=-0.005 Sum_probs=122.1
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh---hhh--hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003891 102 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT---KVK--LEGDINQGVAYYKKALYYNWHYADAMYNLGVA 176 (788)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~---~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 176 (788)
.--.||-+.+++.+.++.+ ..+.......+....+...- +-. ...+.+.|.+.++...+..|+..-..+..|.+
T Consensus 198 vGF~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~ 276 (468)
T PF10300_consen 198 VGFSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRL 276 (468)
T ss_pred cCcCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 3346899999999999887 33322222222222222111 111 35688999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCH
Q 003891 177 YGEMLKFDMAIVFYELAFHFNPH----CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-SQSLNNLGVVYTVQGKM 251 (788)
Q Consensus 177 ~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~ 251 (788)
+...|+.++|++.|++++..... ..-.++.++.++..+.+|++|..++.+..+.+.-. ....+..|.++...++.
T Consensus 277 ~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 277 ERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 99999999999999998854332 24567889999999999999999999999876543 33556778899999999
Q ss_pred -------HHHHHHHHHHHHh
Q 003891 252 -------DAAAEMIEKAIAA 264 (788)
Q Consensus 252 -------~eA~~~l~kal~~ 264 (788)
++|.++++++-..
T Consensus 357 ~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 357 EEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred hhhhhhHHHHHHHHHHHHHH
Confidence 7777777776544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PLN02208 glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0019 Score=71.84 Aligned_cols=152 Identities=12% Similarity=0.063 Sum_probs=92.9
Q ss_pred CCCCeEEEecCCCCcCCHH-HHHHHHHH-HhHcCCcEEEEecCCCC--C--HHHHHHHHHHHHHcCCCCCcEEEcCCcCC
Q 003891 523 TNGFITFGSFNNLAKITPK-VLQVWARI-LCAVPNSRLVVKCKPFC--C--DSVRHRFLSTLEQLGLESLRVDLLPLILL 596 (788)
Q Consensus 523 ~~~~~~f~~~~~~~K~~~~-~~~~~~~i-l~~~p~~~l~l~~~~~~--~--~~~~~~l~~~~~~~gi~~~rv~~~~~~~~ 596 (788)
+.+.|+|-||++..++.++ +.++...+ ....|. +|+...+.+ . +...+.+..+... ..+++.++.|
T Consensus 249 ~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf--~wv~r~~~~~~~~~~~lp~~f~~r~~~-----~g~~v~~W~P- 320 (442)
T PLN02208 249 PPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPF--LIAVKPPRGSSTVQEGLPEGFEERVKG-----RGVVWGGWVQ- 320 (442)
T ss_pred CCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcE--EEEEeCCCcccchhhhCCHHHHHHHhc-----CCcEeeccCC-
Confidence 3467899999999998887 77777776 777775 565542211 0 1223344444432 3456678887
Q ss_pred cHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCC--CccCccchhHHHh-hhCCccccc------CCHHHHHH
Q 003891 597 NHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLLT-KVGLKHLIA------KNEDEYVQ 667 (788)
Q Consensus 597 ~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g--~~~~~r~~~~~l~-~~gl~~~ia------~~~~~y~~ 667 (788)
+.+.+. ...+..|+ ..+|-++++||+++|||+|+++- +.+ ..+.++. .+|+.--+- -+.++..+
T Consensus 321 Q~~iL~-H~~v~~Fv---tHcG~nS~~Eai~~GVP~l~~P~~~DQ~---~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ 393 (442)
T PLN02208 321 QPLILD-HPSIGCFV---NHCGPGTIWESLVSDCQMVLIPFLSDQV---LFTRLMTEEFEVSVEVSREKTGWFSKESLSN 393 (442)
T ss_pred HHHHhc-CCccCeEE---ccCCchHHHHHHHcCCCEEecCcchhhH---HHHHHHHHHhceeEEeccccCCcCcHHHHHH
Confidence 666664 34455676 23778899999999999999883 332 2333333 255543221 15566666
Q ss_pred HHHHHhcCH-HHHHHHHHHHHHH
Q 003891 668 LALQLASDV-TALANLRMSLRDL 689 (788)
Q Consensus 668 ~a~~l~~d~-~~~~~~r~~~~~~ 689 (788)
...++..++ +..+++|+++++.
T Consensus 394 ai~~~m~~~~e~g~~~r~~~~~~ 416 (442)
T PLN02208 394 AIKSVMDKDSDLGKLVRSNHTKL 416 (442)
T ss_pred HHHHHhcCCchhHHHHHHHHHHH
Confidence 666666655 4556666666543
|
|
| >PLN02207 UDP-glycosyltransferase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0049 Score=68.91 Aligned_cols=103 Identities=18% Similarity=0.151 Sum_probs=74.9
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC--CHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 003891 523 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC--CDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 600 (788)
Q Consensus 523 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~--~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~ 600 (788)
+.+.|+|.||++..++.++.++..+.-|...+...||.+..+.. .+.+.+.+.++ + .+|..+.++.| +.+.
T Consensus 273 ~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~~~~~~lp~~f~er-----~-~~~g~i~~W~P-Q~~I 345 (468)
T PLN02207 273 PEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEVTNDDLLPEGFLDR-----V-SGRGMICGWSP-QVEI 345 (468)
T ss_pred CCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCccccccCCHHHHhh-----c-CCCeEEEEeCC-HHHH
Confidence 34579999999999999999999999999999988998864311 01111233322 2 26777778987 5666
Q ss_pred HHhcccccEeecCCCCCCchhHHHHhhhCCceeecC
Q 003891 601 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA 636 (788)
Q Consensus 601 ~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~ 636 (788)
+.- ..+..|+ ..+|.++++||+++|||+|+++
T Consensus 346 L~H-~~vg~Fv---TH~GwnS~~Eai~~GVP~l~~P 377 (468)
T PLN02207 346 LAH-KAVGGFV---SHCGWNSIVESLWFGVPIVTWP 377 (468)
T ss_pred hcc-cccceee---ecCccccHHHHHHcCCCEEecC
Confidence 643 4455566 2377889999999999999988
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.016 Score=61.88 Aligned_cols=189 Identities=19% Similarity=0.144 Sum_probs=110.8
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHH-HHHhCCC
Q 003891 91 YAEAYCNMGVIYKNRGDLESAIACYERCLAV----SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK-ALYYNWH 165 (788)
Q Consensus 91 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~-al~~~p~ 165 (788)
.+++..++-..|....+|+.-++..+..-.+ .++.......++.++... ...|+.++|+..+.. .....+.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRr----n~~gdre~Al~il~~~l~~~~~~ 215 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRR----NKPGDREKALQILLPVLESDENP 215 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhc----ccCCCHHHHHHHHHHHHhccCCC
Confidence 4567778888899999999999999887666 333444444555555441 237899999999999 4455677
Q ss_pred CHHHHHHHHHHHHHc---------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 003891 166 YADAMYNLGVAYGEM---------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 236 (788)
Q Consensus 166 ~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 236 (788)
+++.+..+|.+|-.. ...++|+..|.++.+.+|+. ..-.|++.++...|...+...-+++..
T Consensus 216 ~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~-------- 286 (374)
T PF13281_consen 216 DPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIG-------- 286 (374)
T ss_pred ChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHH--------
Confidence 889999999888542 12344444444444444321 222223333333332211111111110
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhH
Q 003891 237 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 237 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
..+...+.+.|.. -.-.+...+-.++.+..-.|++++|.+++++++++.|......
T Consensus 287 --~~l~~llg~kg~~------------~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~ 342 (374)
T PF13281_consen 287 --VKLSSLLGRKGSL------------EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELE 342 (374)
T ss_pred --HHHHHHHHhhccc------------cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHH
Confidence 0111111111111 1112233445677788889999999999999999988876543
|
|
| >PLN02448 UDP-glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.006 Score=68.70 Aligned_cols=135 Identities=14% Similarity=0.089 Sum_probs=86.8
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 603 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 603 (788)
.+.++|.||++...+.++.++...+-|...+...+|..... ...+.+. ..+++.+.+++| +.+.+..
T Consensus 273 ~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~------~~~~~~~------~~~~~~v~~w~p-Q~~iL~h 339 (459)
T PLN02448 273 EGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGE------ASRLKEI------CGDMGLVVPWCD-QLKVLCH 339 (459)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCc------hhhHhHh------ccCCEEEeccCC-HHHHhcc
Confidence 45688999999988999999999999999888777755422 1112211 136788889987 5666643
Q ss_pred cccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhh-hCCcccc--------cCCHHHHHHHHHHHhc
Q 003891 604 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK-VGLKHLI--------AKNEDEYVQLALQLAS 674 (788)
Q Consensus 604 ~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~-~gl~~~i--------a~~~~~y~~~a~~l~~ 674 (788)
..+..|+ ..+|.+|++||+++|||+|+++-- .-....+..+.. +|+.--+ .-+.++..+...++..
T Consensus 340 -~~v~~fv---tHgG~nS~~eal~~GvP~l~~P~~-~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~ 414 (459)
T PLN02448 340 -SSVGGFW---THCGWNSTLEAVFAGVPMLTFPLF-WDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMD 414 (459)
T ss_pred -CccceEE---ecCchhHHHHHHHcCCCEEecccc-ccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhc
Confidence 3344466 247788999999999999999831 112222333322 2332212 1256777777777776
Q ss_pred CH
Q 003891 675 DV 676 (788)
Q Consensus 675 d~ 676 (788)
|+
T Consensus 415 ~~ 416 (459)
T PLN02448 415 LE 416 (459)
T ss_pred CC
Confidence 64
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.14 Score=53.50 Aligned_cols=226 Identities=13% Similarity=-0.022 Sum_probs=131.1
Q ss_pred HHcCCHHHHHHHHHHHHHhC----CC----CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhC-------CCcHHHHHHH
Q 003891 69 SELMQYDTALGCYEKAALER----PM----YAEAYCNMGVIYKNRG-DLESAIACYERCLAVS-------PNFEIAKNNM 132 (788)
Q Consensus 69 ~~~g~~~~A~~~~~kal~~~----p~----~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~-------p~~~~~~~~l 132 (788)
...|+++.|..++.|+-... |+ ....+++.|......+ ++++|...++++.++- ...++.....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 34566666666666664432 22 1345666677677777 7777777777777662 2223333444
Q ss_pred HHHHHHhhhhhhhcCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---CCHHHHHH
Q 003891 133 AIALTDLGTKVKLEGDI---NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP---HCAEACNN 206 (788)
Q Consensus 133 a~~l~~lg~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~ 206 (788)
..++..++..+...+.. ++|..+.+.+....|+.+..+...-.++.+.++.+++.+.+.+++...+ .+......
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 56677777777766654 4566666667677788888776666666668999999999999987644 22222222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHH---HHHHHcC--C------HHHHHHHHHHHHHh--CCCCH--
Q 003891 207 LGVIYKDRDNLDKAVECYQMALSI--KPNFSQSLNNLG---VVYTVQG--K------MDAAAEMIEKAIAA--NPTYA-- 269 (788)
Q Consensus 207 la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~la---~~~~~~g--~------~~eA~~~l~kal~~--~p~~~-- 269 (788)
....+.. .....|..++.+.+.. .|.... +.... .++...+ + .+...+.+....+. .|-..
T Consensus 164 ~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 164 HIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHh-hCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 2222222 3445677777776654 222221 22222 2222222 2 22233333322221 22222
Q ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 270 -----EAYNNLGVLYRDAGSISLAIDAYEQCL 296 (788)
Q Consensus 270 -----~~~~~la~~~~~~g~~~eA~~~~~~al 296 (788)
..+.+.|.-.++.++|++|.++|+-++
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 234567888899999999999999776
|
It is also involved in sporulation []. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00018 Score=48.48 Aligned_cols=32 Identities=34% Similarity=0.649 Sum_probs=18.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003891 47 YYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 78 (788)
Q Consensus 47 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 78 (788)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555555555555555555555555553
|
|
| >PRK09814 beta-1,6-galactofuranosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00083 Score=72.50 Aligned_cols=132 Identities=10% Similarity=0.039 Sum_probs=86.9
Q ss_pred eEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhccc
Q 003891 527 ITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSL 606 (788)
Q Consensus 527 ~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~ 606 (788)
.+++..+++.|.. . +....|+.+|++.|.|. .+. ... ++|.|.|+++ .++....|+.
T Consensus 170 ~~i~yaG~l~k~~--~------l~~~~~~~~l~i~G~g~----~~~---------~~~-~~V~f~G~~~-~eel~~~l~~ 226 (333)
T PRK09814 170 KKINFAGNLEKSP--F------LKNWSQGIKLTVFGPNP----EDL---------ENS-ANISYKGWFD-PEELPNELSK 226 (333)
T ss_pred ceEEEecChhhch--H------HHhcCCCCeEEEECCCc----ccc---------ccC-CCeEEecCCC-HHHHHHHHhc
Confidence 3566667887642 1 11135788999998772 211 233 7999999998 6788777776
Q ss_pred ccEeecCC------------CCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhc
Q 003891 607 MDISLDTF------------PYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLAS 674 (788)
Q Consensus 607 ~Dv~Ld~~------------~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~ 674 (788)
|+.|-+. .++...-+.++|++|+|||+....... .++.. +-.++++++.++..+....+
T Consensus 227 -~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~~~~~-----~~V~~-~~~G~~v~~~~el~~~l~~~-- 297 (333)
T PRK09814 227 -GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSKAAIA-----DFIVE-NGLGFVVDSLEELPEIIDNI-- 297 (333)
T ss_pred -CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCCccHH-----HHHHh-CCceEEeCCHHHHHHHHHhc--
Confidence 6544222 356667789999999999984432211 22333 44456667888888888775
Q ss_pred CHHHHHHHHHHHHHHh
Q 003891 675 DVTALANLRMSLRDLM 690 (788)
Q Consensus 675 d~~~~~~~r~~~~~~~ 690 (788)
+.+.+.+|+++.++..
T Consensus 298 ~~~~~~~m~~n~~~~~ 313 (333)
T PRK09814 298 TEEEYQEMVENVKKIS 313 (333)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4577888998887653
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00018 Score=48.40 Aligned_cols=32 Identities=53% Similarity=0.701 Sum_probs=18.6
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003891 258 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 289 (788)
Q Consensus 258 l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~ 289 (788)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555655666666666665555555554
|
|
| >PLN02562 UDP-glycosyltransferase | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0065 Score=67.99 Aligned_cols=143 Identities=12% Similarity=0.083 Sum_probs=89.7
Q ss_pred CCeEEEecCCCC-cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 003891 525 GFITFGSFNNLA-KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 603 (788)
Q Consensus 525 ~~~~f~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 603 (788)
+.++|-||++.. .+.++.++..+..+...+.-.||.+..+.. +.....+.++ + ++|+.+.+++| +.+.+.-
T Consensus 273 ~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~~-~~l~~~~~~~-----~-~~~~~v~~w~P-Q~~iL~h 344 (448)
T PLN02562 273 NSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVWR-EGLPPGYVER-----V-SKQGKVVSWAP-QLEVLKH 344 (448)
T ss_pred CceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCch-hhCCHHHHHH-----h-ccCEEEEecCC-HHHHhCC
Confidence 457899999864 789999999999999999988887754311 0111122222 2 36888889987 5665543
Q ss_pred cccccEeecCCCCCCchhHHHHhhhCCceeecC--CCccCccchhHHHh-hhCCcccc-cCCHHHHHHHHHHHhcCHHHH
Q 003891 604 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLT-KVGLKHLI-AKNEDEYVQLALQLASDVTAL 679 (788)
Q Consensus 604 ~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~~~l~-~~gl~~~i-a~~~~~y~~~a~~l~~d~~~~ 679 (788)
..+-.|+ ..+|-+|++||+++|||+|+++ ++.+. .+..+. .+|+.=-+ .-+.++..+...++..|++.+
T Consensus 345 -~~v~~fv---tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~---na~~~~~~~g~g~~~~~~~~~~l~~~v~~~l~~~~~r 417 (448)
T PLN02562 345 -QAVGCYL---THCGWNSTMEAIQCQKRLLCYPVAGDQFV---NCAYIVDVWKIGVRISGFGQKEVEEGLRKVMEDSGMG 417 (448)
T ss_pred -CccceEE---ecCcchhHHHHHHcCCCEEeCCcccchHH---HHHHHHHHhCceeEeCCCCHHHHHHHHHHHhCCHHHH
Confidence 3344566 2477889999999999999987 33222 222221 12332101 126677666666666777655
Q ss_pred HHH
Q 003891 680 ANL 682 (788)
Q Consensus 680 ~~~ 682 (788)
++.
T Consensus 418 ~~a 420 (448)
T PLN02562 418 ERL 420 (448)
T ss_pred HHH
Confidence 443
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0042 Score=67.65 Aligned_cols=102 Identities=19% Similarity=0.168 Sum_probs=89.3
Q ss_pred HcCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003891 179 EMLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 257 (788)
Q Consensus 179 ~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 257 (788)
..|+...|++++..++...|.. .....+++.++.+.|-..+|-.++.+++.++...+-.++.+|+.+..+.+.++|++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 4578888999999998887764 346788999999999999999999999999988889999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHH
Q 003891 258 IEKAIAANPTYAEAYNNLGVLYR 280 (788)
Q Consensus 258 l~kal~~~p~~~~~~~~la~~~~ 280 (788)
+++|++++|+++..-..|-.+-.
T Consensus 699 ~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 699 FRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999887766655543
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.098 Score=60.63 Aligned_cols=64 Identities=25% Similarity=0.286 Sum_probs=28.8
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh
Q 003891 97 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 162 (788)
Q Consensus 97 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~ 162 (788)
..|.+....|++++|++..+.++..-|.+. +.....++..+|....-.|++++|..+...+.+.
T Consensus 463 L~a~val~~~~~e~a~~lar~al~~L~~~~--~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 463 LRAQVALNRGDPEEAEDLARLALVQLPEAA--YRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccccc--chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 334444445555555555555554444332 2222333444444444445555555444444443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.055 Score=62.82 Aligned_cols=63 Identities=21% Similarity=0.226 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHHHHHH
Q 003891 269 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKR 334 (788)
Q Consensus 269 ~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~~~~~ 334 (788)
++-+-.+...|...|-+++-+..++.++-+...+...+..+ +..|. .-..++..+..+-+..+
T Consensus 1279 adeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTEL--aiLYs-kykp~km~EHl~LFwsR 1341 (1666)
T KOG0985|consen 1279 ADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTEL--AILYS-KYKPEKMMEHLKLFWSR 1341 (1666)
T ss_pred hHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHH--HHHHH-hcCHHHHHHHHHHHHHh
Confidence 34455677778888888888888888887766555554442 33332 23455555554444433
|
|
| >PLN00414 glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0063 Score=67.89 Aligned_cols=155 Identities=10% Similarity=0.036 Sum_probs=92.9
Q ss_pred CCCCeEEEecCCCCcCCH-HHHHHHHHHHhHcCCcEEEEecCCCC----CHHHHHHHHHHHHHcCCCCCcEEEcCCcCCc
Q 003891 523 TNGFITFGSFNNLAKITP-KVLQVWARILCAVPNSRLVVKCKPFC----CDSVRHRFLSTLEQLGLESLRVDLLPLILLN 597 (788)
Q Consensus 523 ~~~~~~f~~~~~~~K~~~-~~~~~~~~il~~~p~~~l~l~~~~~~----~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~ 597 (788)
+.+.|+|.||++...+++ ++.++ +.=|...-.--||++..+.+ .+...+.+.++.+..| +++.+++| +
T Consensus 250 ~~~sVvyvsfGS~~~~~~~q~~e~-a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g-----~vv~~w~P-Q 322 (446)
T PLN00414 250 EPGSVVFCAFGTQFFFEKDQFQEF-CLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRG-----IVWEGWVE-Q 322 (446)
T ss_pred CCCceEEEeecccccCCHHHHHHH-HHHHHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCC-----eEEeccCC-H
Confidence 456799999999999985 45554 43344444445788754311 1123345555553322 45568887 5
Q ss_pred HHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHH-hhhCCccccc------CCHHHHHHHHH
Q 003891 598 HDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL-TKVGLKHLIA------KNEDEYVQLAL 670 (788)
Q Consensus 598 ~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l-~~~gl~~~ia------~~~~~y~~~a~ 670 (788)
.+.+. ...++.|| ..+|.+|++||+++|||+|+++-- .-....+.++ ..+|+.--+. -+.++..+...
T Consensus 323 ~~vL~-h~~v~~fv---tH~G~nS~~Ea~~~GvP~l~~P~~-~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~ 397 (446)
T PLN00414 323 PLILS-HPSVGCFV---NHCGFGSMWESLVSDCQIVFIPQL-ADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVK 397 (446)
T ss_pred HHHhc-CCccceEE---ecCchhHHHHHHHcCCCEEecCcc-cchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHH
Confidence 55553 34456677 247888999999999999999842 1123344445 3455542221 26667777677
Q ss_pred HHhcCH-HHHHHHHHHHHHH
Q 003891 671 QLASDV-TALANLRMSLRDL 689 (788)
Q Consensus 671 ~l~~d~-~~~~~~r~~~~~~ 689 (788)
++..|. +..+++|++.++.
T Consensus 398 ~~m~~~~e~g~~~r~~a~~~ 417 (446)
T PLN00414 398 SVMDKDSEIGNLVKRNHKKL 417 (446)
T ss_pred HHhcCChhhHHHHHHHHHHH
Confidence 766654 4556666666543
|
|
| >PLN00164 glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0041 Score=70.15 Aligned_cols=150 Identities=15% Similarity=0.100 Sum_probs=91.6
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC-------CHH----HHHHHHHHHHHcCCCCCcEEEcC
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC-------CDS----VRHRFLSTLEQLGLESLRVDLLP 592 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~-------~~~----~~~~l~~~~~~~gi~~~rv~~~~ 592 (788)
.+.|+|.||++...++++.++-.+.-|...+..-||++..+.. +.. ..+.+.++.+. ..+++.+
T Consensus 271 ~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~-----~g~~v~~ 345 (480)
T PLN00164 271 PASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKG-----RGLVWPT 345 (480)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcC-----CCeEEee
Confidence 3568899999998999988999999999999988888764311 001 11233333222 2355668
Q ss_pred CcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecC--CCccCccchhHHH-hhhCCccccc--------CC
Q 003891 593 LILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLL-TKVGLKHLIA--------KN 661 (788)
Q Consensus 593 ~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~~~l-~~~gl~~~ia--------~~ 661 (788)
++| +.+.+.- ..+-.|| ..+|-+|++||+++|||+|+++ ++.+ ..+.++ ..+|+.-.+. -+
T Consensus 346 w~P-Q~~iL~h-~~vg~fv---tH~GwnS~~Eai~~GVP~l~~P~~~DQ~---~Na~~~~~~~gvG~~~~~~~~~~~~~~ 417 (480)
T PLN00164 346 WAP-QKEILAH-AAVGGFV---THCGWNSVLESLWHGVPMAPWPLYAEQH---LNAFELVADMGVAVAMKVDRKRDNFVE 417 (480)
T ss_pred cCC-HHHHhcC-cccCeEE---eecccchHHHHHHcCCCEEeCCccccch---hHHHHHHHHhCeEEEeccccccCCcCc
Confidence 887 5555543 3334566 2477889999999999999988 3322 223223 4455543221 14
Q ss_pred HHHHHHHHHHHhcCHH-HHHHHHHHH
Q 003891 662 EDEYVQLALQLASDVT-ALANLRMSL 686 (788)
Q Consensus 662 ~~~y~~~a~~l~~d~~-~~~~~r~~~ 686 (788)
.++..+...++..|++ ..+++|++.
T Consensus 418 ~e~l~~av~~vm~~~~~~~~~~r~~a 443 (480)
T PLN00164 418 AAELERAVRSLMGGGEEEGRKAREKA 443 (480)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 5666666667666543 233444444
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.31 Score=57.12 Aligned_cols=287 Identities=15% Similarity=0.010 Sum_probs=182.6
Q ss_pred hHHHHHHHHHHHHhC-CC---CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHCCCH
Q 003891 40 TQDGIQKYYEALKID-PH---YAPAYYNLGVVYS-ELMQYDTALGCYEKAALERPM--Y----AEAYCNMGVIYKNRGDL 108 (788)
Q Consensus 40 ~~~A~~~~~~al~~~-p~---~~~~~~~lg~~~~-~~g~~~~A~~~~~kal~~~p~--~----~~~~~~la~~~~~~g~~ 108 (788)
...|+++++-+++.. +. .+.+.+.+|.+++ ...++++|..+++|++.+... . ..+.+.++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 346778887777422 11 3668899999888 789999999999999877643 2 23566778999998887
Q ss_pred HHHHHHHHHHHhhCCCcHHH-HHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCC--CCHHH----HHHHHHHHHHcC
Q 003891 109 ESAIACYERCLAVSPNFEIA-KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--HYADA----MYNLGVAYGEML 181 (788)
Q Consensus 109 ~~A~~~~~~al~~~p~~~~~-~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~----~~~la~~~~~~g 181 (788)
. |...+++.++........ |...-.. .. .......+++..|++.++....... .++.+ ....+.+....+
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frl-l~-~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~ 193 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRL-LK-IQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRG 193 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHH-HH-HHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCC
Confidence 7 999999999876662221 2211111 11 1112222799999999999988763 44432 334466667778
Q ss_pred ChHHHHHHHHHHHhcC------C----CCHHHHHHHHH--HHHHcCCHHHHHHHHHHH---Hhh---CC---C---C---
Q 003891 182 KFDMAIVFYELAFHFN------P----HCAEACNNLGV--IYKDRDNLDKAVECYQMA---LSI---KP---N---F--- 234 (788)
Q Consensus 182 ~~~~A~~~~~~al~~~------p----~~~~~~~~la~--~~~~~g~~~eA~~~~~~a---l~~---~p---~---~--- 234 (788)
..+++++..+++.... + ....++..+-. ++...|+++.+...+++. ++. .+ . +
T Consensus 194 ~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i 273 (608)
T PF10345_consen 194 SPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSI 273 (608)
T ss_pred CchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeE
Confidence 8888888888875431 1 12334444433 445667766666555443 221 11 0 0
Q ss_pred --------------HH-------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCC------------
Q 003891 235 --------------SQ-------------SLNNLGVVYTVQGKMDAAAEMIEKAIAAN-------PTY------------ 268 (788)
Q Consensus 235 --------------~~-------------~~~~la~~~~~~g~~~eA~~~l~kal~~~-------p~~------------ 268 (788)
.. ++.--|......+..++|.++++++++.- +..
T Consensus 274 ~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~ 353 (608)
T PF10345_consen 274 PLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERI 353 (608)
T ss_pred EeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhH
Confidence 00 22333455566677778888888887641 110
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------hhhHHhHHHHhhhccCCCchHHHHHHH
Q 003891 269 -------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS-------RNAGQNRLLAMNYINEGHDDKLFEAHR 329 (788)
Q Consensus 269 -------~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~-------~~a~~~~lla~~~l~~g~~~~~~~~~~ 329 (788)
....+.++.+..-.+++.+|....+.+.+..... ......++.++.+...|+.+.+...+.
T Consensus 354 ~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 354 QWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 1234556777788999999999999887664322 235556677888888888887776554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13528 Glyco_trans_1_3: Glycosyl transferase family 1 | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0024 Score=68.45 Aligned_cols=109 Identities=17% Similarity=0.235 Sum_probs=76.9
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 603 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 603 (788)
++..++.+++..... ++ .+++++.|+..++++|.+. ... ..+.|.+.+.. ..++...
T Consensus 191 ~~~~iLv~~gg~~~~-----~~-~~~l~~~~~~~~~v~g~~~----~~~-----------~~~ni~~~~~~--~~~~~~~ 247 (318)
T PF13528_consen 191 DEPKILVYFGGGGPG-----DL-IEALKALPDYQFIVFGPNA----ADP-----------RPGNIHVRPFS--TPDFAEL 247 (318)
T ss_pred CCCEEEEEeCCCcHH-----HH-HHHHHhCCCCeEEEEcCCc----ccc-----------cCCCEEEeecC--hHHHHHH
Confidence 445567777766333 33 4677788988888886541 000 14788887764 2566777
Q ss_pred cccccEeecCCCCCCchhHHHHhhhCCceeecCCCc-cCccchhHHHhhhCCcccc
Q 003891 604 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSV-HAHNVGVSLLTKVGLKHLI 658 (788)
Q Consensus 604 ~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~-~~~r~~~~~l~~~gl~~~i 658 (788)
+..||+++.. +|.+|++||+++|+|+|+++-.. .-.+.-+..|..+|+...+
T Consensus 248 m~~ad~vIs~---~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~ 300 (318)
T PF13528_consen 248 MAAADLVISK---GGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVL 300 (318)
T ss_pred HHhCCEEEEC---CCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEc
Confidence 7779999932 77888999999999999998654 4455668888889988765
|
|
| >PLN02173 UDP-glucosyl transferase family protein | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.003 Score=70.28 Aligned_cols=139 Identities=15% Similarity=0.178 Sum_probs=86.8
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 603 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 603 (788)
.+.++|.||++...++++.++-.+.-|...| -||.+..+. .+...+.+.++ +..+++.+.+++| +.+.+.
T Consensus 263 ~~svvyvsfGS~~~~~~~~~~ela~gLs~~~--flWvvr~~~-~~~lp~~~~~~-----~~~~~~~i~~W~P-Q~~iL~- 332 (449)
T PLN02173 263 QGSVVYIAFGSMAKLSSEQMEEIASAISNFS--YLWVVRASE-ESKLPPGFLET-----VDKDKSLVLKWSP-QLQVLS- 332 (449)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHhcCCC--EEEEEeccc-hhcccchHHHh-----hcCCceEEeCCCC-HHHHhC-
Confidence 4568999999999999999998888886666 677775321 00111122222 2236788889988 566554
Q ss_pred cccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhh-hCCccccc-------CCHHHHHHHHHHHhcC
Q 003891 604 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK-VGLKHLIA-------KNEDEYVQLALQLASD 675 (788)
Q Consensus 604 ~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~-~gl~~~ia-------~~~~~y~~~a~~l~~d 675 (788)
...+..|| ..+|.+|++||+++|||+|+++--. -....+-++.. +|+.--|. -+.++..+...++..|
T Consensus 333 H~~v~~Fv---tHcGwnS~~Eai~~GVP~l~~P~~~-DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~ 408 (449)
T PLN02173 333 NKAIGCFM---THCGWNSTMEGLSLGVPMVAMPQWT-DQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEG 408 (449)
T ss_pred CCccceEE---ecCccchHHHHHHcCCCEEecCchh-cchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcC
Confidence 34455666 2478889999999999999988311 12233444432 13321111 1567777777776666
Q ss_pred H
Q 003891 676 V 676 (788)
Q Consensus 676 ~ 676 (788)
.
T Consensus 409 ~ 409 (449)
T PLN02173 409 E 409 (449)
T ss_pred C
Confidence 4
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00042 Score=46.67 Aligned_cols=32 Identities=44% Similarity=0.768 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 270 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 270 ~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
.+|+++|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45667777777777777777777777777765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PLN03015 UDP-glucosyl transferase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0028 Score=70.70 Aligned_cols=104 Identities=18% Similarity=0.111 Sum_probs=74.8
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC--------CH----HHHHHHHHHHHHcCCCCCcEEEc
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC--------CD----SVRHRFLSTLEQLGLESLRVDLL 591 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~--------~~----~~~~~l~~~~~~~gi~~~rv~~~ 591 (788)
.+.|+|.||++...+.++-++-.+.-|...+..-||.+..+.. .+ ...+++.++.+..| +++.
T Consensus 266 ~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rG-----l~v~ 340 (470)
T PLN03015 266 ERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVG-----LVVT 340 (470)
T ss_pred CCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccccccccccccchhhcCChHHHHhhccCc-----eEEE
Confidence 4568999999999999999999999999999999998853210 00 11233444333222 4566
Q ss_pred CCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCC
Q 003891 592 PLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 637 (788)
Q Consensus 592 ~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g 637 (788)
+++| +.+.+. ...+..|+ ..+|.+|++||+++|||+|+++-
T Consensus 341 ~W~P-Q~~vL~-h~~vg~fv---tH~GwnS~~Eai~~GvP~v~~P~ 381 (470)
T PLN03015 341 QWAP-QVEILS-HRSIGGFL---SHCGWSSVLESLTKGVPIVAWPL 381 (470)
T ss_pred ecCC-HHHHhc-cCccCeEE---ecCCchhHHHHHHcCCCEEeccc
Confidence 8887 566665 34455676 24778899999999999999883
|
|
| >PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.004 Score=67.59 Aligned_cols=229 Identities=12% Similarity=0.092 Sum_probs=118.8
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCCCCcccccccCCCCeEEecccCCCCCCC------CCccEEEecCCCCCcCccCCCc-c
Q 003891 423 KKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGL------PTIDYRITDSLADPPETKQKHV-E 495 (788)
Q Consensus 423 ~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~Apvq~~~~g~~~ttg~------~~~Dy~i~d~~~~p~~~~~~~~-e 495 (788)
-++...++..++||+|=..|+.+ -+.+++.|...+-+...-.-.+.|+ +..|-+.++- | +....+. +
T Consensus 81 ~~~~~i~~~~kPdvvi~~Ggy~s--~p~~~aa~~~~~p~~i~e~n~~~g~~nr~~~~~a~~v~~~f---~-~~~~~~~~~ 154 (352)
T PRK12446 81 MDAYVRIRKLKPDVIFSKGGFVS--VPVVIGGWLNRVPVLLHESDMTPGLANKIALRFASKIFVTF---E-EAAKHLPKE 154 (352)
T ss_pred HHHHHHHHhcCCCEEEecCchhh--HHHHHHHHHcCCCEEEECCCCCccHHHHHHHHhhCEEEEEc---c-chhhhCCCC
Confidence 45677899999999997777764 2334444444433333222223343 4456655441 1 2222333 3
Q ss_pred ceEEcCCCccccCCCCCCC---CCCCCCCCCCCCeEEEecCC---CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHH
Q 003891 496 ELIRLPECFLCYTPSPEAG---PVCPTPALTNGFITFGSFNN---LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDS 569 (788)
Q Consensus 496 ~l~~lp~~~~~~~~~~~~~---~~~~~~~~~~~~~~f~~~~~---~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~ 569 (788)
+++..-. +..+..... ......+++++..++..++- ...++..+.+++..+. ++.++++..+.. .
T Consensus 155 k~~~tG~---Pvr~~~~~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~---~~~~vv~~~G~~---~ 225 (352)
T PRK12446 155 KVIYTGS---PVREEVLKGNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL---LKYQIVHLCGKG---N 225 (352)
T ss_pred CeEEECC---cCCcccccccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc---cCcEEEEEeCCc---h
Confidence 3322110 001100000 00112234444333433332 2334333334444332 234555443321 1
Q ss_pred HHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCc----cCccc
Q 003891 570 VRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSV----HAHNV 644 (788)
Q Consensus 570 ~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~----~~~r~ 644 (788)
....+ .. . ..+...+... ++.-..|..||+++ . +|++|+.|++++|+|.|..+-.. .....
T Consensus 226 ~~~~~----~~--~--~~~~~~~f~~--~~m~~~~~~adlvI----sr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~ 291 (352)
T PRK12446 226 LDDSL----QN--K--EGYRQFEYVH--GELPDILAITDFVI----SRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQIL 291 (352)
T ss_pred HHHHH----hh--c--CCcEEecchh--hhHHHHHHhCCEEE----ECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHH
Confidence 22111 11 1 1233335431 34556778899998 6 78999999999999999886432 23445
Q ss_pred hhHHHhhhCCcccccC---CHHHHHHHHHHHhcCHHHHH
Q 003891 645 GVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTALA 680 (788)
Q Consensus 645 ~~~~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~~~ 680 (788)
.+..+...|....+.. +.+...+...++.+|++.++
T Consensus 292 Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~~~~ 330 (352)
T PRK12446 292 NAESFERQGYASVLYEEDVTVNSLIKHVEELSHNNEKYK 330 (352)
T ss_pred HHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCHHHHH
Confidence 6777888887655533 56788888888989987654
|
|
| >PLN02152 indole-3-acetate beta-glucosyltransferase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0089 Score=66.68 Aligned_cols=143 Identities=15% Similarity=0.168 Sum_probs=88.6
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC-----HHHHHHH--HHHHHHcCCCCCcEEEcCCcCC
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DSVRHRF--LSTLEQLGLESLRVDLLPLILL 596 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~-----~~~~~~l--~~~~~~~gi~~~rv~~~~~~~~ 596 (788)
.+.|+|.||++...+..+.++-.+.-|...|...||.+..+... ......+ -+.+.+. + .+|..+.+++|
T Consensus 260 ~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~-~-~~~g~v~~W~P- 336 (455)
T PLN02152 260 ESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHE-L-EEVGMIVSWCS- 336 (455)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCcccccccccccccccccchhHHHh-c-cCCeEEEeeCC-
Confidence 45689999999999999999999999999999999987642110 0000000 0112111 2 36777789987
Q ss_pred cHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCC--CccCccchhHHHhh---hCCcccc----cCCHHHHHH
Q 003891 597 NHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLLTK---VGLKHLI----AKNEDEYVQ 667 (788)
Q Consensus 597 ~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g--~~~~~r~~~~~l~~---~gl~~~i----a~~~~~y~~ 667 (788)
+.+.+.- ..+-.|+ ..+|.+|++||+++|||+|+++- +.+ ..+..+.. .|+.-.. .-+.++..+
T Consensus 337 Q~~iL~h-~~vg~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~DQ~---~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~ 409 (455)
T PLN02152 337 QIEVLRH-RAVGCFV---THCGWSSSLESLVLGVPVVAFPMWSDQP---ANAKLLEEIWKTGVRVRENSEGLVERGEIRR 409 (455)
T ss_pred HHHHhCC-cccceEE---eeCCcccHHHHHHcCCCEEeccccccch---HHHHHHHHHhCceEEeecCcCCcCcHHHHHH
Confidence 5665543 3333565 24788899999999999999883 322 22233322 2332111 115566666
Q ss_pred HHHHHhcCH
Q 003891 668 LALQLASDV 676 (788)
Q Consensus 668 ~a~~l~~d~ 676 (788)
...++..|+
T Consensus 410 av~~vm~~~ 418 (455)
T PLN02152 410 CLEAVMEEK 418 (455)
T ss_pred HHHHHHhhh
Confidence 666666554
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.026 Score=60.37 Aligned_cols=171 Identities=12% Similarity=0.082 Sum_probs=117.0
Q ss_pred HHHHHHHHcCCCChhhHHHHHHHHHHHHH-----HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003891 4 ASYHKALSADPSYKPAAECLAIVLTDLGT-----SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 78 (788)
Q Consensus 4 ~~~~kaL~~~P~~~~a~~~la~~l~~lg~-----~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 78 (788)
..+++.++.+|.+.++|..++...-.+.. ......-.+.-+.+|++|++.+|++...+..+-....+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46899999999999998888765544432 1222233567889999999999999999998888888999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHH
Q 003891 79 GCYEKAALERPMYAEAYCNMGVIYKN---RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 155 (788)
Q Consensus 79 ~~~~kal~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~ 155 (788)
+-+++++..+|++...|..+-..... .-.+++....|.++++.-....... . ........
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~----------~-------~~~~~~~~ 148 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR----------M-------TSHPDLPE 148 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc----------c-------ccccchhh
Confidence 99999999999998888766554443 3467888888888876532211000 0 00000000
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 003891 156 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 197 (788)
Q Consensus 156 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 197 (788)
.+. ....++..+.......|..+.|+..++..++.+
T Consensus 149 ~e~------~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 149 LEE------FMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHH------HHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 000 012344556666777777777777777777764
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00063 Score=45.72 Aligned_cols=33 Identities=36% Similarity=0.668 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003891 270 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302 (788)
Q Consensus 270 ~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 302 (788)
.+++.+|.++..+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456677777777777777777777777777764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.007 Score=63.39 Aligned_cols=223 Identities=13% Similarity=0.070 Sum_probs=110.1
Q ss_pred CceEEEEEeccccCChhhHHHHHHHhhhCCeEEEccCC-----CHHHHHHHHHhCCCcEEEeCCCCCCCCcccccccCCC
Q 003891 383 QNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGI-----DEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPA 457 (788)
Q Consensus 383 ~~fev~~Y~~~~~~D~~t~~~r~~~~~~~~~~~~~~~~-----~~~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~A 457 (788)
.+++|+.++..... ..-+.++. .+.....+.+- +..++.+.|.+.++|++|=-.-.+.. .. .-..|..
T Consensus 30 ~g~~v~f~~~~~~~-~~~~~i~~----~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~vV~D~y~~~~-~~-~~~~k~~ 102 (279)
T TIGR03590 30 QGAEVAFACKPLPG-DLIDLLLS----AGFPVYELPDESSRYDDALELINLLEEEKFDILIVDHYGLDA-DW-EKLIKEF 102 (279)
T ss_pred CCCEEEEEeCCCCH-HHHHHHHH----cCCeEEEecCCCchhhhHHHHHHHHHhcCCCEEEEcCCCCCH-HH-HHHHHHh
Confidence 46788777655332 22223333 11122233322 23468899999999999843222221 11 1123322
Q ss_pred CeEEecccCCCCCCCCCccEEEecCCCCCcCccCCCcc-----ceEEcCCCccccCCCCC--CCCCCCCCCCCCCCeEEE
Q 003891 458 PVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVE-----ELIRLPECFLCYTPSPE--AGPVCPTPALTNGFITFG 530 (788)
Q Consensus 458 pvq~~~~g~~~ttg~~~~Dy~i~d~~~~p~~~~~~~~e-----~l~~lp~~~~~~~~~~~--~~~~~~~~~~~~~~~~f~ 530 (788)
-..+..+.-.+.-+. ..|++|-.... . ....|.+ +.+.+ |. -|.|-.+ ..........++...++-
T Consensus 103 ~~~l~~iDD~~~~~~-~~D~vin~~~~-~--~~~~y~~~~~~~~~~l~-G~--~Y~~lr~eF~~~~~~~~~~~~~~~iLi 175 (279)
T TIGR03590 103 GRKILVIDDLADRPH-DCDLLLDQNLG-A--DASDYQGLVPANCRLLL-GP--SYALLREEFYQLATANKRRKPLRRVLV 175 (279)
T ss_pred CCeEEEEecCCCCCc-CCCEEEeCCCC-c--CHhHhcccCcCCCeEEe-cc--hHHhhhHHHHHhhHhhhcccccCeEEE
Confidence 224444444433222 67888865332 1 1111221 11111 11 1222100 000000000011223344
Q ss_pred ecC--CCCcCCHHHHHHHHHHHhHcCCcEE-EEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccc
Q 003891 531 SFN--NLAKITPKVLQVWARILCAVPNSRL-VVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLM 607 (788)
Q Consensus 531 ~~~--~~~K~~~~~~~~~~~il~~~p~~~l-~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~ 607 (788)
+++ ...+++..+++...++. ++..+ ++.|.+. +..+.+++..+.. .++.+.+.+ .+....+..|
T Consensus 176 ~~GG~d~~~~~~~~l~~l~~~~---~~~~i~vv~G~~~---~~~~~l~~~~~~~----~~i~~~~~~---~~m~~lm~~a 242 (279)
T TIGR03590 176 SFGGADPDNLTLKLLSALAESQ---INISITLVTGSSN---PNLDELKKFAKEY----PNIILFIDV---ENMAELMNEA 242 (279)
T ss_pred EeCCcCCcCHHHHHHHHHhccc---cCceEEEEECCCC---cCHHHHHHHHHhC----CCEEEEeCH---HHHHHHHHHC
Confidence 555 33556677777665532 33333 4555543 2345566655542 478877764 4566777779
Q ss_pred cEeecCCCCCCchhHHHHhhhCCceeecC
Q 003891 608 DISLDTFPYAGTTTTCESLYMGVPCVTMA 636 (788)
Q Consensus 608 Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~ 636 (788)
|+++. .||+|+.|++++|+|+|+++
T Consensus 243 Dl~Is----~~G~T~~E~~a~g~P~i~i~ 267 (279)
T TIGR03590 243 DLAIG----AAGSTSWERCCLGLPSLAIC 267 (279)
T ss_pred CEEEE----CCchHHHHHHHcCCCEEEEE
Confidence 99995 47799999999999999764
|
This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.15 Score=58.84 Aligned_cols=246 Identities=21% Similarity=0.235 Sum_probs=169.9
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCC---
Q 003891 40 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL-----MQYDTALGCYEKAALE-----RPMYAEAYCNMGVIYKNRG--- 106 (788)
Q Consensus 40 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-----g~~~~A~~~~~kal~~-----~p~~~~~~~~la~~~~~~g--- 106 (788)
..+|..+++.+.+. .+..+.+.+|.+|..- .+.+.|+.+|+.+.+. .-.++.+.+.+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 46788888887654 5678888889888754 6899999999999771 1125567889999999853
Q ss_pred --CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----
Q 003891 107 --DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM---- 180 (788)
Q Consensus 107 --~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---- 180 (788)
+.+.|..+|.++-+....+ ..+.++.++..-. ...++..|.++|..+.+. .+..+.+.++.+|..-
T Consensus 306 ~~d~~~A~~~~~~aA~~g~~~--a~~~lg~~~~~g~----~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELGNPD--AQYLLGVLYETGT----KERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVE 377 (552)
T ss_pred cccHHHHHHHHHHHHhcCCch--HHHHHHHHHHcCC----ccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcC
Confidence 7888999999998876543 4455555544322 235788999999999865 4678888888888653
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHH----cCCH
Q 003891 181 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-DNLDKAVECYQMALSIKPNFSQ----SLNNLGVVYTV----QGKM 251 (788)
Q Consensus 181 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~p~~~~----~~~~la~~~~~----~g~~ 251 (788)
.+.+.|..+++++.+.. .+.+...++.++... +.+..+...+....+..-..+. .+......... ..+.
T Consensus 378 r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~ 455 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTL 455 (552)
T ss_pred CCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccch
Confidence 47899999999999887 455555555554433 7777776666655544322221 11111111111 1255
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhC
Q 003891 252 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDA----GSISLAIDAYEQCLKID 299 (788)
Q Consensus 252 ~eA~~~l~kal~~~p~~~~~~~~la~~~~~~----g~~~eA~~~~~~al~l~ 299 (788)
..+...+.++.. ..+..+...||.+|..- .+++.|...|.++....
T Consensus 456 ~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 456 ERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred hHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 666666666643 45677888899998765 46999999999998776
|
|
| >PLN02555 limonoid glucosyltransferase | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0052 Score=69.06 Aligned_cols=153 Identities=14% Similarity=0.088 Sum_probs=92.2
Q ss_pred CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCH-HHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 003891 525 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCD-SVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 603 (788)
Q Consensus 525 ~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~-~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 603 (788)
..|+|.||++...+.++.+.-.+..+...+...||.+..+.... .....+-+.+.+ .+ .+|+.+.+++| +.+.+ .
T Consensus 277 ~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~-~~-~~~g~v~~W~P-Q~~iL-~ 352 (480)
T PLN02555 277 SSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLE-KA-GDKGKIVQWCP-QEKVL-A 352 (480)
T ss_pred CceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCcccccchhhcCChhhhh-hc-CCceEEEecCC-HHHHh-C
Confidence 45789999999899998888888888888887788765321100 000111111211 12 36788889987 55555 3
Q ss_pred cccccEeecCCCCCCchhHHHHhhhCCceeecCC--CccCccchhHHHh-hhCCccccc--------CCHHHHHHHHHHH
Q 003891 604 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLLT-KVGLKHLIA--------KNEDEYVQLALQL 672 (788)
Q Consensus 604 ~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g--~~~~~r~~~~~l~-~~gl~~~ia--------~~~~~y~~~a~~l 672 (788)
...+..|+ ..+|.+|++||+++|||+|+++- +.+ ..+.++. .+|+.--+. -+.++..+...++
T Consensus 353 H~~v~~Fv---tH~G~nS~~Eai~~GVP~l~~P~~~DQ~---~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~v 426 (480)
T PLN02555 353 HPSVACFV---THCGWNSTMEALSSGVPVVCFPQWGDQV---TDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEA 426 (480)
T ss_pred CCccCeEE---ecCCcchHHHHHHcCCCEEeCCCccccH---HHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHH
Confidence 45677777 24778899999999999999873 322 2222232 224442221 1456666666666
Q ss_pred hcCHHHHHHHHHHHHH
Q 003891 673 ASDVTALANLRMSLRD 688 (788)
Q Consensus 673 ~~d~~~~~~~r~~~~~ 688 (788)
..+++ -+.+|+++++
T Consensus 427 m~~~~-g~~~r~ra~~ 441 (480)
T PLN02555 427 TVGEK-AAELKQNALK 441 (480)
T ss_pred hcCch-HHHHHHHHHH
Confidence 65532 2445555443
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.18 Score=53.28 Aligned_cols=174 Identities=24% Similarity=0.274 Sum_probs=112.5
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Q 003891 33 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL----MQYDTALGCYEKAALERPMYAEAYCNMGVIYKN---- 104 (788)
Q Consensus 33 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~---- 104 (788)
.....+++..|...+.++-.. ........++.+|... .+..+|..+|+.+. ...++.+.+.+|.+|..
T Consensus 50 ~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 50 GSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGV 125 (292)
T ss_pred cccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCc
Confidence 334567888999999887662 3347788888888753 46889999999554 45678899999999998
Q ss_pred CCCHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Q 003891 105 RGDLESAIACYERCLAVSPNFE-IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE---- 179 (788)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---- 179 (788)
..+..+|..+|+++.+..-... .....++..+..=........+..+|...|.++.... +..+...+|.+|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCC
Confidence 5599999999999998754432 2244444443331100011113346777777776554 56666666666543
Q ss_pred cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 003891 180 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 215 (788)
Q Consensus 180 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 215 (788)
..++++|...|.++.+... ....+.++ ++...|
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 2356677777777666554 55666666 444444
|
|
| >PLN02534 UDP-glycosyltransferase | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.004 Score=70.07 Aligned_cols=106 Identities=15% Similarity=0.100 Sum_probs=71.9
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHH-HHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRF-LSTLEQLGLESLRVDLLPLILLNHDHMQ 602 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l-~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 602 (788)
...|+|.||++...+.++-+.-.+.-|...+..-||.+..+...+.....+ -+-|.+. +...++++.+++| +.+.+.
T Consensus 282 ~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~-~~~~g~~v~~w~p-q~~iL~ 359 (491)
T PLN02534 282 PRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEER-IKGRGLLIKGWAP-QVLILS 359 (491)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchhhHHh-hccCCeeccCCCC-HHHHhc
Confidence 356899999999999988877777899999999999986321111111111 0122221 1235677789988 555554
Q ss_pred hcccccE--eecCCCCCCchhHHHHhhhCCceeecCC
Q 003891 603 AYSLMDI--SLDTFPYAGTTTTCESLYMGVPCVTMAG 637 (788)
Q Consensus 603 ~~~~~Dv--~Ld~~~~~g~~t~~eal~~GvPvvt~~g 637 (788)
- .++ |+ ..+|.+|++||+++|||+|+++-
T Consensus 360 h---~~v~~fv---tH~G~ns~~ea~~~GvP~v~~P~ 390 (491)
T PLN02534 360 H---PAIGGFL---THCGWNSTIEGICSGVPMITWPL 390 (491)
T ss_pred C---CccceEE---ecCccHHHHHHHHcCCCEEeccc
Confidence 3 444 55 24788899999999999999985
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.023 Score=57.74 Aligned_cols=137 Identities=15% Similarity=0.075 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHH
Q 003891 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS-QSLNNLGVVY 245 (788)
Q Consensus 167 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~la~~~ 245 (788)
.+.-+..+.-....|++.+|...+..++...|++..+...++.+|...|+.+.|...+...-....+.. ..+......+
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 334455566778889999999999999999999999999999999999999998888766322211111 1111111222
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 003891 246 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304 (788)
Q Consensus 246 ~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 304 (788)
.+.....+. ..+++.+..+|++.++.+.++..+...|+.++|.+.+-..++.+-...+
T Consensus 214 ~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d 271 (304)
T COG3118 214 EQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFED 271 (304)
T ss_pred HHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence 222222222 3355666779999999999999999999999999999888887665443
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00067 Score=72.79 Aligned_cols=103 Identities=23% Similarity=0.267 Sum_probs=71.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 003891 207 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 286 (788)
Q Consensus 207 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~ 286 (788)
-+.-.+.-+.++.|+..|.++++++|+++..+.+.+..+.+.+++..|+.-+.++++.+|....+|+..|......+++.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 34445555667777777777777777777766677777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhhCCCChhhHHhH
Q 003891 287 LAIDAYEQCLKIDPDSRNAGQNR 309 (788)
Q Consensus 287 eA~~~~~~al~l~p~~~~a~~~~ 309 (788)
+|...|++...+.|+++.+....
T Consensus 90 ~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 90 KALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHhhhcCcCcHHHHHHH
Confidence 77777777777777776665443
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.12 Score=54.45 Aligned_cols=129 Identities=27% Similarity=0.326 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcC-------
Q 003891 148 DINQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRD------- 215 (788)
Q Consensus 148 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g------- 215 (788)
+..+|..+|+.+. ....+.+.+.+|.+|.. ..+..+|..+|+++.+..... ..+.+.++.+|..-.
T Consensus 92 ~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~ 169 (292)
T COG0790 92 DKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAY 169 (292)
T ss_pred cHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccH
Confidence 3455555555222 23344455555555544 235555555555555543322 233555555554431
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003891 216 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 283 (788)
Q Consensus 216 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g 283 (788)
+...|...|.++.... ++.+...+|.+|.. ..++++|..+|+++-+... ....+.++ ++...|
T Consensus 170 ~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 170 DDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 2236777777776554 66777777877754 3478888888888877765 67777777 555555
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0012 Score=44.38 Aligned_cols=32 Identities=44% Similarity=0.803 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Q 003891 93 EAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124 (788)
Q Consensus 93 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 124 (788)
.+|+++|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34455555555555555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.17 Score=54.90 Aligned_cols=238 Identities=12% Similarity=0.063 Sum_probs=140.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHH--HHHHHHHHHhhhh
Q 003891 65 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK--NNMAIALTDLGTK 142 (788)
Q Consensus 65 g~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~la~~l~~lg~~ 142 (788)
+.+...+|+++.-.++.... ..+..+..+..+......++++++..+.+++...--+..... ......|-.+..
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~---~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~- 80 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQS---NEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK- 80 (352)
T ss_pred HHHHHhcCChhhHHHHHhhc---cCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-
Confidence 56778899999833333322 122345666667777799999999999988876522111000 000111111100
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHH--HHHHHHHh----cCCCCHHHHHHHHHHHH
Q 003891 143 VKLEGDINQGVAYYKKALYYNWHY----ADAMYNLGVAYGEMLKFDMAI--VFYELAFH----FNPHCAEACNNLGVIYK 212 (788)
Q Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~--~~~~~al~----~~p~~~~~~~~la~~~~ 212 (788)
.....+.+++..+....... +.. ...|...- -....+++--. -.++..+- ........+...+.+..
T Consensus 81 lq~L~Elee~~~~~~~~~~~-~~~~~~l~~~W~~Rl--~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR 157 (352)
T PF02259_consen 81 LQQLVELEEIIELKSNLSQN-PQDLKSLLKRWRSRL--PNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR 157 (352)
T ss_pred HhHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHH--HHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 00112333333333211100 000 00111110 00111111111 11112211 13455778999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC-C-------------------
Q 003891 213 DRDNLDKAVECYQMALSIKP----NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-NP-T------------------- 267 (788)
Q Consensus 213 ~~g~~~eA~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~-~p-~------------------- 267 (788)
+.|+++.|...+.++...++ ..+.+....+.++...|+..+|+..++..+.. .. .
T Consensus 158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEV 237 (352)
T ss_pred HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccccccc
Confidence 99999999999999988652 25678888999999999999999999888871 10 0
Q ss_pred -------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCChhhHHhH
Q 003891 268 -------------YAEAYNNLGVLYRDA------GSISLAIDAYEQCLKIDPDSRNAGQNR 309 (788)
Q Consensus 268 -------------~~~~~~~la~~~~~~------g~~~eA~~~~~~al~l~p~~~~a~~~~ 309 (788)
...++..+|...... +..+++...|+++.+++|+...++...
T Consensus 238 ~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~ 298 (352)
T PF02259_consen 238 ISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSW 298 (352)
T ss_pred ccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 134566777777777 889999999999999999988876654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0018 Score=43.36 Aligned_cols=31 Identities=35% Similarity=0.688 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Q 003891 94 AYCNMGVIYKNRGDLESAIACYERCLAVSPN 124 (788)
Q Consensus 94 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 124 (788)
+++.+|.++..+|++++|+++|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4444555555555555555555555554443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0041 Score=63.52 Aligned_cols=98 Identities=21% Similarity=0.192 Sum_probs=55.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 205 NNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 280 (788)
Q Consensus 205 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~ 280 (788)
-.-|+-|++.++|..|+.+|.+.|+..-.+ ...|.+.+-+....|+|..|+.-..+++..+|.+..+++.=+.|+.
T Consensus 85 KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~ 164 (390)
T KOG0551|consen 85 KEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLL 164 (390)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHH
Confidence 334555555555666666666655553322 2245555666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHhhCCCC
Q 003891 281 DAGSISLAIDAYEQCLKIDPDS 302 (788)
Q Consensus 281 ~~g~~~eA~~~~~~al~l~p~~ 302 (788)
.+.++.+|..+.+..++++-+.
T Consensus 165 eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 165 ELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHHHHHHHHHHHhhhhhhhHHH
Confidence 6666666666666555554443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.088 Score=59.00 Aligned_cols=148 Identities=14% Similarity=0.238 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH------HhhCC-CcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCC
Q 003891 94 AYCNMGVIYKNRGDLESAIACYERC------LAVSP-NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY 166 (788)
Q Consensus 94 ~~~~la~~~~~~g~~~~A~~~~~~a------l~~~p-~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 166 (788)
.|-.-|.+|.+..++++|+++|++. +++.. ..+. .....-...|.-....|+++.|+..|-++--
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~---evv~lee~wg~hl~~~~q~daainhfiea~~----- 734 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPE---EVVKLEEAWGDHLEQIGQLDAAINHFIEANC----- 734 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcH---HHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-----
Confidence 4555566777777888888887653 22210 0000 0011112234444556677777777655421
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 003891 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 246 (788)
Q Consensus 167 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 246 (788)
......+....+++.+|+..++.....+. -...|-.++.-|...|+++.|.++|.++- ....-...|-
T Consensus 735 ---~~kaieaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~ 802 (1636)
T KOG3616|consen 735 ---LIKAIEAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYG 802 (1636)
T ss_pred ---HHHHHHHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHh
Confidence 11222333444566666665554433221 12334455566666666666666665541 1122233455
Q ss_pred HcCCHHHHHHHHHHH
Q 003891 247 VQGKMDAAAEMIEKA 261 (788)
Q Consensus 247 ~~g~~~eA~~~l~ka 261 (788)
+.|+++.|.+.-+++
T Consensus 803 k~~kw~da~kla~e~ 817 (1636)
T KOG3616|consen 803 KAGKWEDAFKLAEEC 817 (1636)
T ss_pred ccccHHHHHHHHHHh
Confidence 556666665555444
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.036 Score=56.33 Aligned_cols=142 Identities=15% Similarity=0.064 Sum_probs=102.2
Q ss_pred hhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHH
Q 003891 142 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKA 220 (788)
Q Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA 220 (788)
-....+++.+|...+..++...|++.++...++.+|...|+.+.|...+...=....+. ..........+.+.....+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34457899999999999999999999999999999999999999988887642222221 11111112233333332222
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCC
Q 003891 221 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT--YAEAYNNLGVLYRDAGS 284 (788)
Q Consensus 221 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~--~~~~~~~la~~~~~~g~ 284 (788)
..+++.+..+|++.++-+.++..+...|+.++|.+.+-..+..+-. +..+...+-.++...|.
T Consensus 223 -~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 223 -QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred -HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 3455667789999999999999999999999999999988887543 34555556666655553
|
|
| >PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5 | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0086 Score=64.66 Aligned_cols=136 Identities=13% Similarity=0.150 Sum_probs=86.6
Q ss_pred CCCCeEEEecCCCCcCC-H----HHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCc
Q 003891 523 TNGFITFGSFNNLAKIT-P----KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 597 (788)
Q Consensus 523 ~~~~~~f~~~~~~~K~~-~----~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~ 597 (788)
..+.+++.++.+..... + .+.++..++... ++..+++...+ .+.....+.+.+.+. +++.+.+..+ .
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~-~~~~vi~~~hn--~p~~~~~i~~~l~~~----~~v~~~~~l~-~ 249 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAER-QNVPVIFPLHN--NPRGSDIIIEKLKKY----DNVRLIEPLG-Y 249 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHH-TTEEEEEE--S---HHHHHHHHHHHTT-----TTEEEE-----H
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhc-CCCcEEEEecC--CchHHHHHHHHhccc----CCEEEECCCC-H
Confidence 45667788888887777 5 455555555555 67767776542 235667776666655 2999999987 8
Q ss_pred HHHHHhcccccEeecCCCCCCchhHH-HHhhhCCceeecC--CCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhc
Q 003891 598 HDHMQAYSLMDISLDTFPYAGTTTTC-ESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLAS 674 (788)
Q Consensus 598 ~~~~~~~~~~Dv~Ld~~~~~g~~t~~-eal~~GvPvvt~~--g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~ 674 (788)
.+|+..++.|++++ -+.| +.. ||.++|+|||++. |+...+|.. |-.-++..+.++-.+.+.+...
T Consensus 250 ~~~l~ll~~a~~vv----gdSs-GI~eEa~~lg~P~v~iR~~geRqe~r~~-------~~nvlv~~~~~~I~~ai~~~l~ 317 (346)
T PF02350_consen 250 EEYLSLLKNADLVV----GDSS-GIQEEAPSLGKPVVNIRDSGERQEGRER-------GSNVLVGTDPEAIIQAIEKALS 317 (346)
T ss_dssp HHHHHHHHHESEEE----ESSH-HHHHHGGGGT--EEECSSS-S-HHHHHT-------TSEEEETSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcceEEE----EcCc-cHHHHHHHhCCeEEEecCCCCCHHHHhh-------cceEEeCCCHHHHHHHHHHHHh
Confidence 99999999999998 6666 888 9999999999984 444444443 5555666777777777777776
Q ss_pred CHHH
Q 003891 675 DVTA 678 (788)
Q Consensus 675 d~~~ 678 (788)
+.+.
T Consensus 318 ~~~~ 321 (346)
T PF02350_consen 318 DKDF 321 (346)
T ss_dssp -HHH
T ss_pred ChHH
Confidence 6433
|
1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.025 Score=52.78 Aligned_cols=94 Identities=23% Similarity=0.216 Sum_probs=73.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKIDPHY----------------------APAYYNLGVVYSELMQYDTALGCYEKAA 85 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~lg~~~~~~g~~~~A~~~~~kal 85 (788)
...|......++...++..+++++.+.... ..+...++..+...|++++|+..+++++
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 344555667789999999999999873221 3355667788889999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 003891 86 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 121 (788)
Q Consensus 86 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 121 (788)
..+|.+..++..+..+|...|+..+|++.|++..+.
T Consensus 90 ~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 90 ALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.031 Score=52.18 Aligned_cols=62 Identities=24% Similarity=0.360 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003891 236 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 297 (788)
Q Consensus 236 ~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 297 (788)
.+...++..+...|++++|+..+++++..+|.+..++..+..+|...|+..+|++.|+++.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35667778888899999999999999999999999999999999999999999999988754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.061 Score=51.31 Aligned_cols=117 Identities=24% Similarity=0.144 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 185 MAIVFYELAFHFNPHCA---EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMI 258 (788)
Q Consensus 185 ~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l 258 (788)
+.....++....++... .+...++..+...+++++|+..++.++....+. .-+-.+++.+...+|++++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44444555555554443 345667888999999999999999998654433 236678999999999999999988
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003891 259 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302 (788)
Q Consensus 259 ~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 302 (788)
....... =.+..-...|.++...|+.++|+..|+++++..++.
T Consensus 150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 7653211 012335568999999999999999999999987543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.12 Score=60.26 Aligned_cols=225 Identities=13% Similarity=0.114 Sum_probs=135.2
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 003891 36 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACY 115 (788)
Q Consensus 36 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 115 (788)
.-++.+.|.++.++. +.+..|..+|....+.|...+|++.|-++ +++..|.....+..+.|.|++-++++
T Consensus 1087 ~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1087 NIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred HhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 346777777776664 55789999999999999999999988775 56778888888889999999999998
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003891 116 ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 195 (788)
Q Consensus 116 ~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 195 (788)
.-+-+...+.. .-..+..+|.. .++..+-.+.. ..|+.+. ....|.-++..|.|+.|.-+|..
T Consensus 1157 ~MaRkk~~E~~-id~eLi~AyAk-------t~rl~elE~fi-----~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~--- 1219 (1666)
T KOG0985|consen 1157 LMARKKVREPY-IDSELIFAYAK-------TNRLTELEEFI-----AGPNVAN-IQQVGDRCFEEKMYEAAKLLYSN--- 1219 (1666)
T ss_pred HHHHHhhcCcc-chHHHHHHHHH-------hchHHHHHHHh-----cCCCchh-HHHHhHHHhhhhhhHHHHHHHHH---
Confidence 88776543321 11112222222 22332222211 1222222 23344444455555555444432
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------------------C----CCHHHHHHHHHHHHHcCC
Q 003891 196 FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK---------------------P----NFSQSLNNLGVVYTVQGK 250 (788)
Q Consensus 196 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~---------------------p----~~~~~~~~la~~~~~~g~ 250 (788)
..-|..++..+..+|+|..|...-++|-... . -+++-+-.+...|...|-
T Consensus 1220 -----vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGy 1294 (1666)
T KOG0985|consen 1220 -----VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGY 1294 (1666)
T ss_pred -----hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCc
Confidence 2233444444555555555554444432210 0 113345566777888899
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 251 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 293 (788)
Q Consensus 251 ~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 293 (788)
+++-+..++.++.+...+...+..||.+|.+-+ +++-.++++
T Consensus 1295 FeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~ 1336 (1666)
T KOG0985|consen 1295 FEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLK 1336 (1666)
T ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHH
Confidence 999999999888887777777778887776543 444444444
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0017 Score=66.70 Aligned_cols=97 Identities=18% Similarity=0.162 Sum_probs=89.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 107 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~ 107 (788)
...+...+..|.+++|++.|..+++++|..+..+...+.++.++++...|+.-+..+++++|+....|-..+.....+|+
T Consensus 118 k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 118 KVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN 197 (377)
T ss_pred HHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc
Confidence 33455667889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCC
Q 003891 108 LESAIACYERCLAVSPN 124 (788)
Q Consensus 108 ~~~A~~~~~~al~~~p~ 124 (788)
+++|...+..+.+++-+
T Consensus 198 ~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 198 WEEAAHDLALACKLDYD 214 (377)
T ss_pred hHHHHHHHHHHHhcccc
Confidence 99999999999988654
|
|
| >TIGR00661 MJ1255 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.013 Score=62.75 Aligned_cols=69 Identities=12% Similarity=0.198 Sum_probs=52.9
Q ss_pred CcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCc-cCccchhHHHhhhCCccccc
Q 003891 586 LRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSV-HAHNVGVSLLTKVGLKHLIA 659 (788)
Q Consensus 586 ~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~-~~~r~~~~~l~~~gl~~~ia 659 (788)
+++.+.+..+ +++...+..||+++.. +|.+|++||+++|+|+|..+-.. +.....+..+...|+...+-
T Consensus 229 ~~v~~~~~~~--~~~~~~l~~ad~vI~~---~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~ 298 (321)
T TIGR00661 229 ENVEIRRITT--DNFKELIKNAELVITH---GGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALE 298 (321)
T ss_pred CCEEEEECCh--HHHHHHHHhCCEEEEC---CChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcC
Confidence 6788887754 5677888889999942 56678999999999999988643 34556777888888875553
|
This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.12 Score=55.29 Aligned_cols=148 Identities=15% Similarity=0.082 Sum_probs=117.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003891 154 AYYKKALYYNWHYADAMYNLGVAYGEMLK------------FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 221 (788)
Q Consensus 154 ~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 221 (788)
.-+++.++.+|.+.++|..+.......-. .+.-+.+|++|++.+|++...+..+-.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45778888999999999988776654432 456788999999999999999999988999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCC----C--------------CHHHHHHHHHHHH
Q 003891 222 ECYQMALSIKPNFSQSLNNLGVVYTV---QGKMDAAAEMIEKAIAANP----T--------------YAEAYNNLGVLYR 280 (788)
Q Consensus 222 ~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~eA~~~l~kal~~~p----~--------------~~~~~~~la~~~~ 280 (788)
+-+++++..+|++...|..+-..... .-.+++....|.+++..-. . ...++..+.....
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~ 165 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR 165 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999888766554433 3457788888888876411 0 1345667888889
Q ss_pred HcCCHHHHHHHHHHHHhhCCC
Q 003891 281 DAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 281 ~~g~~~eA~~~~~~al~l~p~ 301 (788)
+.|..+.|+..++-.++++=-
T Consensus 166 ~aG~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 166 QAGYTERAVALWQALLEFNFF 186 (321)
T ss_pred HCCchHHHHHHHHHHHHHHcC
Confidence 999999999999999988543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0029 Score=42.47 Aligned_cols=32 Identities=41% Similarity=0.817 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 270 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 270 ~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
.+++.+|.+|..+|++++|.++|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45677777777777777777777777777764
|
... |
| >PRK02797 4-alpha-L-fucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.061 Score=55.39 Aligned_cols=168 Identities=17% Similarity=0.126 Sum_probs=101.8
Q ss_pred CCeEEEecC--CCCcCCHHHHHHHHHHHhHcCCcEEEE-ecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 003891 525 GFITFGSFN--NLAKITPKVLQVWARILCAVPNSRLVV-KCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 601 (788)
Q Consensus 525 ~~~~f~~~~--~~~K~~~~~~~~~~~il~~~p~~~l~l-~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~ 601 (788)
+.+|+-.-| .+.-.|-+.++...+.. ..+.++++ +|-|.+++..++++++...++.-. +++..+.....-++|+
T Consensus 145 ~~~tIlvGNSgd~SN~Hie~L~~l~~~~--~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~-~~~~~L~e~l~f~eYl 221 (322)
T PRK02797 145 GKMTILVGNSGDRSNRHIEALRALHQQF--GDNVKIIVPMGYPANNQAYIEEVRQAGLALFGA-ENFQILTEKLPFDDYL 221 (322)
T ss_pred CceEEEEeCCCCCcccHHHHHHHHHHHh--CCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCc-ccEEehhhhCCHHHHH
Confidence 445554433 44444445555444433 34555555 344446778888998888887653 6776655544479999
Q ss_pred HhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHHH
Q 003891 602 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALA 680 (788)
Q Consensus 602 ~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~ 680 (788)
+.++.||+..--|.= -|--|+|=.+.+|+||+.....++ -..|...|++=+... +.. |.....
T Consensus 222 ~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~n~f-----wqdl~e~gv~Vlf~~--d~L---------~~~~v~ 285 (322)
T PRK02797 222 ALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRDNPF-----WQDLTEQGLPVLFTG--DDL---------DEDIVR 285 (322)
T ss_pred HHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEecCCch-----HHHHHhCCCeEEecC--Ccc---------cHHHHH
Confidence 999999999977755 444588899999999997433222 345778888865322 211 322223
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 003891 681 NLRMSLRDLMSKSPVCDGQNFALGLESTYRN 711 (788)
Q Consensus 681 ~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 711 (788)
+.++++...-.+.-.|..+.++..+.++|..
T Consensus 286 e~~rql~~~dk~~I~Ff~pn~~~~W~~~l~~ 316 (322)
T PRK02797 286 EAQRQLASVDKNIIAFFSPNYLQGWRNALAI 316 (322)
T ss_pred HHHHHHHhhCcceeeecCHhHHHHHHHHHHH
Confidence 3333333222222237777877777776654
|
|
| >PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.02 Score=61.83 Aligned_cols=136 Identities=18% Similarity=0.226 Sum_probs=88.0
Q ss_pred CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCC
Q 003891 536 AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP 615 (788)
Q Consensus 536 ~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~ 615 (788)
.++.|.++++..++.+..|+.++++-..+ ....+.+.+.+...+... .+.+.. .+-...++.||+.|
T Consensus 199 ~rllP~~l~aa~~l~~~~p~l~fvvp~a~---~~~~~~i~~~~~~~~~~~-~~~~~~-----~~~~~~m~~ad~al---- 265 (373)
T PF02684_consen 199 KRLLPIFLEAAKLLKKQRPDLQFVVPVAP---EVHEELIEEILAEYPPDV-SIVIIE-----GESYDAMAAADAAL---- 265 (373)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEecCC---HHHHHHHHHHHHhhCCCC-eEEEcC-----CchHHHHHhCcchh----
Confidence 56679999999999999999999986543 223334555666665543 233221 12344556699998
Q ss_pred CCCchhHHHHhhhCCceeecCCCccCccchhHHHh------hhCCcc----------ccc--CCHHHHHHHHHHHhcCHH
Q 003891 616 YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT------KVGLKH----------LIA--KNEDEYVQLALQLASDVT 677 (788)
Q Consensus 616 ~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~------~~gl~~----------~ia--~~~~~y~~~a~~l~~d~~ 677 (788)
-..||.|+|+..+|+|.|...-- +..+.-+.+ .+||+. ++- -+++...+.+..+..|++
T Consensus 266 ~~SGTaTLE~Al~g~P~Vv~Yk~---~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~ 342 (373)
T PF02684_consen 266 AASGTATLEAALLGVPMVVAYKV---SPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENPE 342 (373)
T ss_pred hcCCHHHHHHHHhCCCEEEEEcC---cHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHH
Confidence 67899999999999997765432 222222222 235554 442 368888888889999987
Q ss_pred HHHHHHHHHH
Q 003891 678 ALANLRMSLR 687 (788)
Q Consensus 678 ~~~~~r~~~~ 687 (788)
.+.......+
T Consensus 343 ~~~~~~~~~~ 352 (373)
T PF02684_consen 343 KRKKQKELFR 352 (373)
T ss_pred HHHHHHHHHH
Confidence 7555444443
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.55 E-value=1.9 Score=48.33 Aligned_cols=169 Identities=13% Similarity=0.030 Sum_probs=134.6
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHH
Q 003891 143 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-NPHCAEACNNLGVIYKDRDNLDKAV 221 (788)
Q Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~eA~ 221 (788)
....|+++...-.|++++--...+.+.|...+......|+.+-|...+..+.+. .|+.+.+...-+.+-...|++..|.
T Consensus 307 ~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~ 386 (577)
T KOG1258|consen 307 EITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAK 386 (577)
T ss_pred hhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHH
Confidence 345789999999999999888888999999999999999999999999998887 4667788888888888999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHhCCCC---HHHHHHHHHH-HHHcCCHHHHHHHHHH
Q 003891 222 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE---MIEKAIAANPTY---AEAYNNLGVL-YRDAGSISLAIDAYEQ 294 (788)
Q Consensus 222 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~---~l~kal~~~p~~---~~~~~~la~~-~~~~g~~~eA~~~~~~ 294 (788)
..+++..+..|...++-...+.....+|+.+.+.. ++.....-..+. ...+...+.. +.-.++.+.|...+.+
T Consensus 387 ~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~ 466 (577)
T KOG1258|consen 387 VILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLE 466 (577)
T ss_pred HHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999889988888888888899999998884 333222211111 2334444444 3446789999999999
Q ss_pred HHhhCCCChhhHHhHHH
Q 003891 295 CLKIDPDSRNAGQNRLL 311 (788)
Q Consensus 295 al~l~p~~~~a~~~~ll 311 (788)
+++..|++...+..+.-
T Consensus 467 ~~~~~~~~k~~~~~~~~ 483 (577)
T KOG1258|consen 467 ANDILPDCKVLYLELIR 483 (577)
T ss_pred hhhcCCccHHHHHHHHH
Confidence 99999998877665443
|
|
| >TIGR02094 more_P_ylases alpha-glucan phosphorylases | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.087 Score=60.89 Aligned_cols=171 Identities=13% Similarity=0.124 Sum_probs=105.4
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHh--Hc--CCcEEEEecCCCCCHH----HHHHHHHHHHHcCCCCCcEEEcCCc
Q 003891 525 GFITFGSFNNL--AKITPKVLQVWARILC--AV--PNSRLVVKCKPFCCDS----VRHRFLSTLEQLGLESLRVDLLPLI 594 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~~~~~~~~il~--~~--p~~~l~l~~~~~~~~~----~~~~l~~~~~~~gi~~~rv~~~~~~ 594 (788)
+.+++|...|+ +|..+-++....++++ .. ...++++.|++...+. ....+....++-.+ ++||+|+..-
T Consensus 388 d~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~-~~kv~f~~~Y 466 (601)
T TIGR02094 388 DVLTIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEF-RGRIVFLENY 466 (601)
T ss_pred CCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccC-CCCEEEEcCC
Confidence 45678888887 9998888888777765 21 3578888887743222 33444443333223 4799997653
Q ss_pred CCcHHHH--HhcccccEeec-CCC-C-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccc-----------
Q 003891 595 LLNHDHM--QAYSLMDISLD-TFP-Y-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI----------- 658 (788)
Q Consensus 595 ~~~~~~~--~~~~~~Dv~Ld-~~~-~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i----------- 658 (788)
..-+ ..+..+||+|- |+. + ..||+-+=||.-|.+.+|....-...-.. |-.+|.
T Consensus 467 ---d~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~~~-------~~nGf~f~~~~~~~~~~ 536 (601)
T TIGR02094 467 ---DINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEGYD-------GDNGWAIGDGEEYDDEE 536 (601)
T ss_pred ---CHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccccCC-------CCcEEEECCCccccccc
Confidence 3333 35789999999 774 8 78999999999999999865421111000 112221
Q ss_pred ---cCCHHHHHHH---HH-HHhcC-H------HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 003891 659 ---AKNEDEYVQL---AL-QLASD-V------TALANLRMSLRDLMSKSPVCDGQNFALGLESTY 709 (788)
Q Consensus 659 ---a~~~~~y~~~---a~-~l~~d-~------~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 709 (788)
..|.+++.+. ++ .+-.+ + .+.+.+|+.++. ..|.|++.+++++..+.|
T Consensus 537 ~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~---~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 537 EQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIAT---IAPRFSTNRMVREYVDKF 598 (601)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHHh
Confidence 1345554443 34 43433 2 244444444432 246799999999988876
|
This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0026 Score=65.28 Aligned_cols=89 Identities=25% Similarity=0.291 Sum_probs=64.5
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 213 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 292 (788)
Q Consensus 213 ~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 292 (788)
..|.+++|++.|..++.++|.....+...+.++.++++...|+.-+..+++++|+...-|-..+.....+|++++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 44667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhhCCC
Q 003891 293 EQCLKIDPD 301 (788)
Q Consensus 293 ~~al~l~p~ 301 (788)
..+.+++-+
T Consensus 206 ~~a~kld~d 214 (377)
T KOG1308|consen 206 ALACKLDYD 214 (377)
T ss_pred HHHHhcccc
Confidence 777776544
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.12 Score=49.45 Aligned_cols=99 Identities=23% Similarity=0.147 Sum_probs=79.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 103 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~ 103 (788)
...++..+...+++++|+..++.++....+. .-+-.+++.+...+|++++|+..+...... .-.+..-...|.++.
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill 170 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHH
Confidence 4567888999999999999999998654332 345688999999999999999988765321 112345667899999
Q ss_pred HCCCHHHHHHHHHHHHhhCCCcH
Q 003891 104 NRGDLESAIACYERCLAVSPNFE 126 (788)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~~~ 126 (788)
..|+-++|...|+++++..++..
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 171 AKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HcCchHHHHHHHHHHHHccCChH
Confidence 99999999999999999875543
|
|
| >KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.027 Score=57.96 Aligned_cols=125 Identities=17% Similarity=0.263 Sum_probs=97.2
Q ss_pred cCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEe--ecCCCCCC--chhHHHHhhh
Q 003891 553 VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDIS--LDTFPYAG--TTTTCESLYM 628 (788)
Q Consensus 553 ~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~--Ld~~~~~g--~~t~~eal~~ 628 (788)
.|+...++-|+| +.++...+...++....=+| .+++.. -++|...+..||+- |.|+..|= .+-++|..-+
T Consensus 291 lP~llciITGKG----PlkE~Y~~~I~~~~~~~v~~-~tpWL~-aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGc 364 (444)
T KOG2941|consen 291 LPSLLCIITGKG----PLKEKYSQEIHEKNLQHVQV-CTPWLE-AEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGC 364 (444)
T ss_pred CCcEEEEEcCCC----chhHHHHHHHHHhcccceee-eecccc-cccchhHhhccccceEeeecCcccCcchhHHHhhcC
Confidence 477667777887 89999999999988863233 356766 68999999999965 55544432 4578999999
Q ss_pred CCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhc----CHHHHHHHHHHHHHH
Q 003891 629 GVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLAS----DVTALANLRMSLRDL 689 (788)
Q Consensus 629 GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~----d~~~~~~~r~~~~~~ 689 (788)
|+||+++.=.+... |-.-|-++++-.|.++..+...-|-+ +...+.++++++++.
T Consensus 365 glPvcA~~fkcl~E------LVkh~eNGlvF~Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~ 423 (444)
T KOG2941|consen 365 GLPVCAVNFKCLDE------LVKHGENGLVFEDSEELAEQLQMLFKNFPDNADELNQLKKNLREE 423 (444)
T ss_pred CCceeeecchhHHH------HHhcCCCceEeccHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Confidence 99999876554443 33448889999999999999998888 899999999999876
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.14 Score=55.41 Aligned_cols=107 Identities=14% Similarity=0.063 Sum_probs=73.8
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CC------------CC---HHHHHHHH
Q 003891 49 EALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------------RP------------MY---AEAYCNMG 99 (788)
Q Consensus 49 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~--------------~p------------~~---~~~~~~la 99 (788)
..++.+|-+.+++..++.++..+|+++.|.+++++|+-. ++ .| ..+++...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 345679999999999999999999999999999998631 11 11 23556667
Q ss_pred HHHHHCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH
Q 003891 100 VIYKNRGDLESAIACYERCLAVSPN-FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 161 (788)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~ 161 (788)
..+.+.|-+..|.++.+-.+.++|. ++-... ..+-....+.++++--++.++....
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~l------l~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVL------LFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhH------HHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 7788888888888888888888888 553222 2222222334566655555554433
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.14 Score=54.92 Aligned_cols=145 Identities=17% Similarity=0.187 Sum_probs=93.7
Q ss_pred CcCCHH-HHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCC------------cEEEcCCcCCcHHHHH
Q 003891 536 AKITPK-VLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL------------RVDLLPLILLNHDHMQ 602 (788)
Q Consensus 536 ~K~~~~-~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~------------rv~~~~~~~~~~~~~~ 602 (788)
....++ .++++.+++++.||..|+++-.. ++--..+.+.++++|+... .|.+... ..+...
T Consensus 240 H~GEeei~l~~~~~l~~~~~~~llIlVPRH---pERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~Dt---mGEL~l 313 (419)
T COG1519 240 HEGEEEIILDAHQALKKQFPNLLLILVPRH---PERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDT---MGELGL 313 (419)
T ss_pred CCchHHHHHHHHHHHHhhCCCceEEEecCC---hhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEec---HhHHHH
Confidence 444444 88999999999999999997433 1223456677777776532 4444333 357888
Q ss_pred hcccccEeec--CCCCCCchhHHHHhhhCCceeecCCCccC--ccchhHHHhhhCCcccccCCHHHHHHHHHHHh-cCHH
Q 003891 603 AYSLMDISLD--TFPYAGTTTTCESLYMGVPCVTMAGSVHA--HNVGVSLLTKVGLKHLIAKNEDEYVQLALQLA-SDVT 677 (788)
Q Consensus 603 ~~~~~Dv~Ld--~~~~~g~~t~~eal~~GvPvvt~~g~~~~--~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~-~d~~ 677 (788)
.|.++||+.- |+--.||.-.+|++++|+|||+ |+... +-....++.+ |-. ++++| ++.+..++.+. .|++
T Consensus 314 ~y~~adiAFVGGSlv~~GGHN~LEpa~~~~pvi~--Gp~~~Nf~ei~~~l~~~-ga~-~~v~~-~~~l~~~v~~l~~~~~ 388 (419)
T COG1519 314 LYGIADIAFVGGSLVPIGGHNPLEPAAFGTPVIF--GPYTFNFSDIAERLLQA-GAG-LQVED-ADLLAKAVELLLADED 388 (419)
T ss_pred HHhhccEEEECCcccCCCCCChhhHHHcCCCEEe--CCccccHHHHHHHHHhc-CCe-EEECC-HHHHHHHHHHhcCCHH
Confidence 9999999842 3322777789999999999998 44322 2222222222 322 34566 66666666655 5588
Q ss_pred HHHHHHHHHHHHhh
Q 003891 678 ALANLRMSLRDLMS 691 (788)
Q Consensus 678 ~~~~~r~~~~~~~~ 691 (788)
.+.+++++..+-+.
T Consensus 389 ~r~~~~~~~~~~v~ 402 (419)
T COG1519 389 KREAYGRAGLEFLA 402 (419)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877765544
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.13 Score=56.43 Aligned_cols=249 Identities=12% Similarity=0.015 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHH
Q 003891 41 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM----YAEAYCNMGVIYKNRGDLESAIACYE 116 (788)
Q Consensus 41 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~ 116 (788)
+...+.+....+..|+++-.....+..+...|+.+.|+..++..++ +. ..-.++.+|.++..+.+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4455555556667899999999999999999998888888888776 22 23467788999999999999999999
Q ss_pred HHHhhCCCcHHHHHHHH-HHHHHhhh-hhhhcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 003891 117 RCLAVSPNFEIAKNNMA-IALTDLGT-KVKLEGDINQGVAYYKKALYY---NWHYADAMYNLGVAYGEMLKFDMAIVFYE 191 (788)
Q Consensus 117 ~al~~~p~~~~~~~~la-~~l~~lg~-~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 191 (788)
...+.+.=..-.+..++ -++..-.. +....++-++|..+++...++ .|.+...-. .-..++.+.-.
T Consensus 328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~---------f~~RKverf~~ 398 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEK---------FIVRKVERFVK 398 (546)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhH---------HHHHHHHHHhc
Confidence 88876543332222222 22211111 112234666666555544332 222211100 00111111111
Q ss_pred HHHhcCCCCHH--HHHHHHHHHHH--cCCHHHHHHHHHHHHh---h-CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 192 LAFHFNPHCAE--ACNNLGVIYKD--RDNLDKAVECYQMALS---I-KPNFS-QSLNNLGVVYTVQGKMDAAAEMIEKAI 262 (788)
Q Consensus 192 ~al~~~p~~~~--~~~~la~~~~~--~g~~~eA~~~~~~al~---~-~p~~~-~~~~~la~~~~~~g~~~eA~~~l~kal 262 (788)
+.- .++.... -++.++.++-. ....++.. -++..++ . ++++. --+..+|.++..+|+...|..+|+..+
T Consensus 399 ~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~ 476 (546)
T KOG3783|consen 399 RGP-LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQV 476 (546)
T ss_pred ccc-ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 110 1111111 12333333221 11222222 1111111 1 12211 145678999999999999999999888
Q ss_pred Hh---CCC----CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCC
Q 003891 263 AA---NPT----YAEAYNNLGVLYRDAGS-ISLAIDAYEQCLKIDPDS 302 (788)
Q Consensus 263 ~~---~p~----~~~~~~~la~~~~~~g~-~~eA~~~~~~al~l~p~~ 302 (788)
+. ... .|.+++.+|.+|..+|. ..++.+++.+|-+...++
T Consensus 477 ~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 477 EKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 43 122 26789999999999999 999999999998776543
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.013 Score=59.12 Aligned_cols=66 Identities=27% Similarity=0.359 Sum_probs=60.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHH
Q 003891 245 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 310 (788)
Q Consensus 245 ~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~l 310 (788)
..+.|+.++|...|+.|+.+.|++++++..+|......++.-+|-++|-+|+.++|.+..+..++.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 567899999999999999999999999999999999999999999999999999999999877754
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.36 E-value=1.4 Score=56.64 Aligned_cols=108 Identities=13% Similarity=0.141 Sum_probs=82.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC----------
Q 003891 199 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-PT---------- 267 (788)
Q Consensus 199 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~-p~---------- 267 (788)
...+.|...|.+....|+++.|..++-+|.+.. -++++...|..+..+|+-..|+..+++.++.+ |+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 347889999999999999999999998888766 57888999999999999999999999999663 22
Q ss_pred C------HHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCChhhHHh
Q 003891 268 Y------AEAYNNLGVLYRDAGSIS--LAIDAYEQCLKIDPDSRNAGQN 308 (788)
Q Consensus 268 ~------~~~~~~la~~~~~~g~~~--eA~~~~~~al~l~p~~~~a~~~ 308 (788)
. ..+.+.++......++++ .-+++|+.+.++.|...+.++.
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~ 1794 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYH 1794 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceee
Confidence 1 123455556666666643 4567889999999866555443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.33 E-value=1 Score=48.34 Aligned_cols=238 Identities=11% Similarity=0.068 Sum_probs=127.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcH
Q 003891 47 YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 126 (788)
Q Consensus 47 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 126 (788)
+++++..-+-.++.|+.....+...++-++|+...++++...|. ....++.+|...++-+.-..+|+++.+.-
T Consensus 291 ~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L---- 363 (660)
T COG5107 291 HNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDL---- 363 (660)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHH----
Confidence 45555555556666666666666666666666666666555554 45556666666666555555565554310
Q ss_pred HHHHHHHHHHHHhhhhh---hhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH
Q 003891 127 IAKNNMAIALTDLGTKV---KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 203 (788)
Q Consensus 127 ~~~~~la~~l~~lg~~~---~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 203 (788)
..-+.. +..- ...|+++...+++-+-.. ...-++..+-+.-.+..-.+.|...|-++-+..-....+
T Consensus 364 ------~r~ys~-~~s~~~s~~D~N~e~~~Ell~kr~~---k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~v 433 (660)
T COG5107 364 ------KRKYSM-GESESASKVDNNFEYSKELLLKRIN---KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHV 433 (660)
T ss_pred ------HHHHhh-hhhhhhccccCCccccHHHHHHHHh---hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcce
Confidence 000000 0000 012233222222211111 222233333344444555666777777765543222222
Q ss_pred HHHHH-HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH
Q 003891 204 CNNLG-VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYR 280 (788)
Q Consensus 204 ~~~la-~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~--~~~~~~la~~~~ 280 (788)
+..-| .-+...|++.-|-..|+-.+...|+.+......-..+...++-+.|...|++++..-... ..+|..+...-.
T Consensus 434 yi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs 513 (660)
T COG5107 434 YIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYES 513 (660)
T ss_pred eeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHH
Confidence 22222 224456778888888888888888877766666667777788888888888776543222 344444555555
Q ss_pred HcCCHHHHHHHHHHHHhhCCC
Q 003891 281 DAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 281 ~~g~~~eA~~~~~~al~l~p~ 301 (788)
.-|+...+...-++..++.|.
T Consensus 514 ~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 514 MVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred hhcchHHHHhHHHHHHHHcCc
Confidence 556666555555555555554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.30 E-value=1.5 Score=47.15 Aligned_cols=281 Identities=11% Similarity=0.015 Sum_probs=171.5
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 6 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 85 (788)
Q Consensus 6 ~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal 85 (788)
++.-++.+|.+.-. |+.+-..+..++.+++-.+.|++...-.|-...+|...-..-...++|.....+|.+++
T Consensus 31 LRerIkdNPtnI~S-------~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 31 LRERIKDNPTNILS-------YFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred HHHHhhcCchhHHH-------HHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 45567788887766 66667777788999999999999888888777777665555556678888888888887
Q ss_pred HhCCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh--hhhhhcCCHHHHHH
Q 003891 86 LERPMYAEAYCNMGVIYKNRG---------DLESAIACYERCLAVSPNFEIAKNNMAIALTDLG--TKVKLEGDINQGVA 154 (788)
Q Consensus 86 ~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg--~~~~~~g~~~~A~~ 154 (788)
...-+ .+.|...-..-.+.+ ..-+|.+..-.+.-..|.....|...+..+...- .....+.+.+.-..
T Consensus 104 ~k~l~-ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~ 182 (660)
T COG5107 104 KKSLN-LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRN 182 (660)
T ss_pred hhhcc-HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 65433 344433322222222 1223333333333456666666666555443321 11225567777888
Q ss_pred HHHHHHHhCCCCHH-HHHH---------HHHHHHHcC----ChHHHHHHHHHHHhc-------CCCCHHH----------
Q 003891 155 YYKKALYYNWHYAD-AMYN---------LGVAYGEML----KFDMAIVFYELAFHF-------NPHCAEA---------- 203 (788)
Q Consensus 155 ~~~~al~~~p~~~~-~~~~---------la~~~~~~g----~~~~A~~~~~~al~~-------~p~~~~~---------- 203 (788)
.|.+++..--.+.+ .|.. ...+---.| -|-.|...|++...+ +|-+...
T Consensus 183 ~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S 262 (660)
T COG5107 183 GYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDS 262 (660)
T ss_pred HHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccc
Confidence 88888865444332 1111 111111112 255677777766543 2222111
Q ss_pred -HHHHHHHHHHc-----CC-HHH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 003891 204 -CNNLGVIYKDR-----DN-LDK-AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 275 (788)
Q Consensus 204 -~~~la~~~~~~-----g~-~~e-A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~l 275 (788)
|.+....-... |+ ..+ ---.+++++...+-.++.|+.....+...++-+.|+...++++...|. ....+
T Consensus 263 ~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~l 339 (660)
T COG5107 263 NWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFL 339 (660)
T ss_pred hhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeH
Confidence 22222221111 11 222 223567778888888899999988888999999999998888777766 67778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 003891 276 GVLYRDAGSISLAIDAYEQCLK 297 (788)
Q Consensus 276 a~~~~~~g~~~eA~~~~~~al~ 297 (788)
+.+|....+-++-..+|+++.+
T Consensus 340 se~yel~nd~e~v~~~fdk~~q 361 (660)
T COG5107 340 SEYYELVNDEEAVYGCFDKCTQ 361 (660)
T ss_pred HHHHhhcccHHHHhhhHHHHHH
Confidence 8888888887777777777654
|
|
| >PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.044 Score=57.93 Aligned_cols=202 Identities=13% Similarity=0.041 Sum_probs=120.8
Q ss_pred HHhCCCcEEEeCCCCCCCCcccccccCCCCeEEecccCCCCCCCCCccEEEecCCCCCcCccCCCccceEEcCCCccccC
Q 003891 429 VREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYT 508 (788)
Q Consensus 429 i~~d~idilvdl~g~t~~~~~~~~a~r~Apvq~~~~g~~~ttg~~~~Dy~i~d~~~~p~~~~~~~~e~l~~lp~~~~~~~ 508 (788)
+....+|++|=..+.|...-+.+-.....++....++.|..- ...+|.+|+-.+-.++ -...++..++.....+
T Consensus 53 ~~~~~pdLiIsaGr~t~~~~~~l~r~~gg~~~~V~i~~P~~~-~~~FDlvi~p~HD~~~-----~~~Nvl~t~ga~~~i~ 126 (311)
T PF06258_consen 53 LEPPWPDLIISAGRRTAPAALALRRASGGRTKTVQIMDPRLP-PRPFDLVIVPEHDRLP-----RGPNVLPTLGAPNRIT 126 (311)
T ss_pred ccCCCCcEEEECCCchHHHHHHHHHHcCCCceEEEEcCCCCC-ccccCEEEECcccCcC-----CCCceEecccCCCcCC
Confidence 444678999877766653333322223455678888999665 8889999975443331 2245666665433333
Q ss_pred CCCCCCCC----CCCCC--CCCCCeEEEecCCCCcCCHH----HHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHH
Q 003891 509 PSPEAGPV----CPTPA--LTNGFITFGSFNNLAKITPK----VLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTL 578 (788)
Q Consensus 509 ~~~~~~~~----~~~~~--~~~~~~~f~~~~~~~K~~~~----~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~ 578 (788)
|....... ..... -+-..|.+|--++.++++++ +++...++.+..+ ..++|.......+.....|++.+
T Consensus 127 ~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~vttSRRTp~~~~~~L~~~~ 205 (311)
T PF06258_consen 127 PERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYG-GSLLVTTSRRTPPEAEAALRELL 205 (311)
T ss_pred HHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCC-CeEEEEcCCCCcHHHHHHHHHhh
Confidence 22111100 00111 23346678888888999998 4444556666666 66777655545556666666655
Q ss_pred HHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccc
Q 003891 579 EQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNV 644 (788)
Q Consensus 579 ~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~ 644 (788)
+ ....+.+....+ ..-|.+.+..||.++-|--+ -.=+.||++.|+||.++.-+.-.+|+
T Consensus 206 ~----~~~~~~~~~~~~-~nPy~~~La~ad~i~VT~DS--vSMvsEA~~tG~pV~v~~l~~~~~r~ 264 (311)
T PF06258_consen 206 K----DNPGVYIWDGTG-ENPYLGFLAAADAIVVTEDS--VSMVSEAAATGKPVYVLPLPGRSGRF 264 (311)
T ss_pred c----CCCceEEecCCC-CCcHHHHHHhCCEEEEcCcc--HHHHHHHHHcCCCEEEecCCCcchHH
Confidence 4 235663334434 34588888999999855322 12368999999999987765433444
|
The function of this family is unknown. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.17 Score=54.86 Aligned_cols=141 Identities=16% Similarity=0.047 Sum_probs=80.3
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------------------------CCC---HHHHHHHHHH
Q 003891 160 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--------------------------PHC---AEACNNLGVI 210 (788)
Q Consensus 160 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~---~~~~~~la~~ 210 (788)
++.+|-+.+++..++.++..+|+.+.|.+.+++|+-.. +.| ..+.+.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 45677778888888888888888888877777775320 111 2233444555
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCC-CHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcC
Q 003891 211 YKDRDNLDKAVECYQMALSIKPN-FSQSL-NNLGVVYTVQGKMDAAAEMIEKAIAANP-----TYAEAYNNLGVLYRDAG 283 (788)
Q Consensus 211 ~~~~g~~~eA~~~~~~al~~~p~-~~~~~-~~la~~~~~~g~~~eA~~~l~kal~~~p-----~~~~~~~~la~~~~~~g 283 (788)
+.+.|-+..|.++.+-.+.++|. ++-.. +.+=....+.++++--++.++....... ..|...+..+.++...+
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~ 192 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLE 192 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhc
Confidence 56666666666666666666666 44422 2222333445555555555554443111 12334555555555555
Q ss_pred CH---------------HHHHHHHHHHHhhCC
Q 003891 284 SI---------------SLAIDAYEQCLKIDP 300 (788)
Q Consensus 284 ~~---------------~eA~~~~~~al~l~p 300 (788)
+. ++|.+.+++|+...|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 193 KEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred CccccccccccccccchhHHHHHHHHHHHHhH
Confidence 55 566666666666555
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.11 Score=56.75 Aligned_cols=77 Identities=12% Similarity=0.138 Sum_probs=56.1
Q ss_pred CcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccc-ccCCHHH
Q 003891 586 LRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHL-IAKNEDE 664 (788)
Q Consensus 586 ~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~-ia~~~~~ 664 (788)
++|.+.+.++ ..+++..+..||+++ .+++...-||..+|+|||++.+ ...+|.. |-.-+ |..+.++
T Consensus 262 ~~v~l~~~l~-~~~~l~Ll~~a~~vi----tdSSggi~EA~~lg~Pvv~l~~-R~e~~~~-------g~nvl~vg~~~~~ 328 (365)
T TIGR03568 262 PNFRLFKSLG-QERYLSLLKNADAVI----GNSSSGIIEAPSFGVPTINIGT-RQKGRLR-------ADSVIDVDPDKEE 328 (365)
T ss_pred CCEEEECCCC-hHHHHHHHHhCCEEE----EcChhHHHhhhhcCCCEEeecC-Cchhhhh-------cCeEEEeCCCHHH
Confidence 6899999987 799999999999999 4443445899999999998753 2233322 33334 5568888
Q ss_pred HHHHHHHHhcCH
Q 003891 665 YVQLALQLASDV 676 (788)
Q Consensus 665 y~~~a~~l~~d~ 676 (788)
-++.+.+ +.++
T Consensus 329 I~~a~~~-~~~~ 339 (365)
T TIGR03568 329 IVKAIEK-LLDP 339 (365)
T ss_pred HHHHHHH-HhCh
Confidence 8887777 4555
|
This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0096 Score=39.84 Aligned_cols=30 Identities=43% Similarity=0.874 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCC
Q 003891 94 AYCNMGVIYKNRGDLESAIACYERCLAVSP 123 (788)
Q Consensus 94 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 123 (788)
+|+.+|.+|..+|++++|+++|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455555555555555555555555555544
|
... |
| >cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.15 Score=60.27 Aligned_cols=179 Identities=14% Similarity=0.116 Sum_probs=107.5
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHHHhHc----CCcEEEEecCCCCCHHHHHHHHHHHHH----cCCCCCcEEEcC
Q 003891 523 TNGFITFGSFNNL--AKITPKVLQVWARILCAV----PNSRLVVKCKPFCCDSVRHRFLSTLEQ----LGLESLRVDLLP 592 (788)
Q Consensus 523 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~----p~~~l~l~~~~~~~~~~~~~l~~~~~~----~gi~~~rv~~~~ 592 (788)
..+.+++|..-|+ +|...-+++...++.+-. ....+++.|++...+..-..+.+.+.+ -.+. +||+|++
T Consensus 475 dpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~-~kVvfle 553 (778)
T cd04299 475 DPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFR-GRIVFLE 553 (778)
T ss_pred CCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCC-CcEEEEc
Confidence 3466788888887 898888777766554321 237888888765333332333333332 2343 6999987
Q ss_pred CcCCcHHHHH--hcccccEeecCCC--C-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC-------
Q 003891 593 LILLNHDHMQ--AYSLMDISLDTFP--Y-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK------- 660 (788)
Q Consensus 593 ~~~~~~~~~~--~~~~~Dv~Ld~~~--~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~------- 660 (788)
. ...-++ .+..|||+|.|+- + ..||+-+=|+.-|++-++.-..-...-.. |-.+|.-.
T Consensus 554 ~---Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~~-------g~nGwaig~~~~~~~ 623 (778)
T cd04299 554 D---YDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGYD-------GENGWAIGDGDEYED 623 (778)
T ss_pred C---CCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCccccccC-------CCCceEeCCCccccC
Confidence 6 334443 5689999999994 7 78999999999999999755422111111 22233311
Q ss_pred -------CHH---HHHHHHHH-HhcC------H-HHHHHHHHHHHHHhhcCCCCChHHHHHHH-HHHHHHHHHH
Q 003891 661 -------NED---EYVQLALQ-LASD------V-TALANLRMSLRDLMSKSPVCDGQNFALGL-ESTYRNMWHR 715 (788)
Q Consensus 661 -------~~~---~y~~~a~~-l~~d------~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-e~~~~~~~~~ 715 (788)
+.+ +-++.+|. +--+ | .+.+.+|+.++.. .|.|++.++++.. +..|.-+-++
T Consensus 624 ~~~~d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~---~p~fs~~Rmv~eY~~~~Y~p~~~~ 694 (778)
T cd04299 624 DEYQDAEEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATL---GPRFSAERMVREYVERFYLPAARR 694 (778)
T ss_pred hhhcchhhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhc---ccCCCHHHHHHHHHHHhHHHHHHH
Confidence 111 11222222 3322 3 4777777776643 6889999999765 4555544333
|
Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=4.6 Score=47.44 Aligned_cols=268 Identities=12% Similarity=0.018 Sum_probs=142.1
Q ss_pred HHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 5 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 84 (788)
Q Consensus 5 ~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ka 84 (788)
.++..|+.+|+.+.........+..++ +.+++..-+..+. ..|.+.......+......|+.++|.....++
T Consensus 84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La----~~~~w~~~~~~~~----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~l 155 (644)
T PRK11619 84 QVTNFIRANPTLPPARSLQSRFVNELA----RREDWRGLLAFSP----EKPKPVEARCNYYYAKWATGQQQEAWQGAKEL 155 (644)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHH----HccCHHHHHHhcC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666677776666555544444443 3456665555221 23666666667777777778877777666666
Q ss_pred HHhCCCCHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhc
Q 003891 85 ALERPMYAEAYCNMGVIYKN------------------RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 146 (788)
Q Consensus 85 l~~~p~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~ 146 (788)
.......+.....+-..+.+ .|+...|....... .++. ..++..+..+ .
T Consensus 156 W~~g~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l---~~~~----~~~a~a~~al------~ 222 (644)
T PRK11619 156 WLTGKSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQL---PADY----QTIASALIKL------Q 222 (644)
T ss_pred hccCCCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhc---ChhH----HHHHHHHHHH------H
Confidence 54443333333333333333 33333332222211 0000 0011111111 0
Q ss_pred CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 003891 147 GDINQGVAYYKKALYYNWHY-ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAV 221 (788)
Q Consensus 147 g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~ 221 (788)
.+...+...+.. ..+.. ......++..-....+.+.|...+.+......-+ ..+...+|.-....+...+|.
T Consensus 223 ~~p~~~~~~~~~---~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~ 299 (644)
T PRK11619 223 NDPNTVETFART---TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQA 299 (644)
T ss_pred HCHHHHHHHhhc---cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHH
Confidence 112222111111 11111 1122333444445667788888888764444322 233444554444443367788
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003891 222 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 297 (788)
Q Consensus 222 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 297 (788)
..+..+..... +.+.......+....++++.+..++...-....+.....+.+|..+..+|+.++|..+|+++..
T Consensus 300 ~w~~~~~~~~~-~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 300 KWRDDVIMRSQ-STSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHhcccccC-CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88877654332 3333444444555888998888888776444445678889999999999999999999999844
|
|
| >KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.078 Score=60.69 Aligned_cols=144 Identities=18% Similarity=0.149 Sum_probs=87.6
Q ss_pred CeEEEecCCCC---cCCHHHHHHHHHHHhHcCCcE-EEEecCCCCCHHHHHHHHHHHHHcCCC---CCcEEEcCCcCCcH
Q 003891 526 FITFGSFNNLA---KITPKVLQVWARILCAVPNSR-LVVKCKPFCCDSVRHRFLSTLEQLGLE---SLRVDLLPLILLNH 598 (788)
Q Consensus 526 ~~~f~~~~~~~---K~~~~~~~~~~~il~~~p~~~-l~l~~~~~~~~~~~~~l~~~~~~~gi~---~~rv~~~~~~~~~~ 598 (788)
.++|.||+... .+.++.....+..+...|+.. +|..... .... +.+ |+. ...|++.+++| +.
T Consensus 278 ~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~-~~~~----~~~-----~~~~~~~~nV~~~~W~P-Q~ 346 (496)
T KOG1192|consen 278 SVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPD-DSIY----FPE-----GLPNRGRGNVVLSKWAP-QN 346 (496)
T ss_pred CeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecCC-cchh----hhh-----cCCCCCcCceEEecCCC-cH
Confidence 57788899887 899999999999999887776 4544322 1100 111 332 34588889998 66
Q ss_pred HHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecC--CCccCccchhHHHhhhCCcc-ccc--CCHHHHHHHHHHHh
Q 003891 599 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKH-LIA--KNEDEYVQLALQLA 673 (788)
Q Consensus 599 ~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~~~l~~~gl~~-~ia--~~~~~y~~~a~~l~ 673 (788)
+.+.....+..|+ -.+|-++++|+++.|||+|+++ |+.+.. +-++..-|... ++. -+.++..+....+.
T Consensus 347 ~lll~H~~v~~Fv---THgG~nSt~E~~~~GvP~v~~Plf~DQ~~N---a~~i~~~g~~~v~~~~~~~~~~~~~~~~~il 420 (496)
T KOG1192|consen 347 DLLLDHPAVGGFV---THGGWNSTLESIYSGVPMVCVPLFGDQPLN---ARLLVRHGGGGVLDKRDLVSEELLEAIKEIL 420 (496)
T ss_pred HHhcCCCcCcEEE---ECCcccHHHHHHhcCCceecCCccccchhH---HHHHHhCCCEEEEehhhcCcHHHHHHHHHHH
Confidence 7663344455555 2366678999999999999765 554432 23333333322 111 12222455566667
Q ss_pred cCHHHHHHHHHHH
Q 003891 674 SDVTALANLRMSL 686 (788)
Q Consensus 674 ~d~~~~~~~r~~~ 686 (788)
.+++..+..++-.
T Consensus 421 ~~~~y~~~~~~l~ 433 (496)
T KOG1192|consen 421 ENEEYKEAAKRLS 433 (496)
T ss_pred cChHHHHHHHHHH
Confidence 7776655554443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.0076 Score=41.11 Aligned_cols=26 Identities=50% Similarity=0.792 Sum_probs=14.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003891 272 YNNLGVLYRDAGSISLAIDAYEQCLK 297 (788)
Q Consensus 272 ~~~la~~~~~~g~~~eA~~~~~~al~ 297 (788)
+.+||.+|.++|++++|+++|++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666666666666666443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.63 Score=52.35 Aligned_cols=64 Identities=16% Similarity=0.060 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 003891 54 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM--------YAEAYCNMGVIYKNRGDLESAIACYERC 118 (788)
Q Consensus 54 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a 118 (788)
+| ++..|..++......-.++.|...|-+.-....- ...--...+.+-.--|++++|.+.|-.+
T Consensus 689 nP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~ 760 (1189)
T KOG2041|consen 689 NP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDA 760 (1189)
T ss_pred CC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhcc
Confidence 44 5889999999888888888888877765321100 0001123344444557888888777554
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.034 Score=56.22 Aligned_cols=69 Identities=22% Similarity=0.260 Sum_probs=45.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 003891 67 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 135 (788)
Q Consensus 67 ~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 135 (788)
-....|+.++|..+|+.++.+.|.+++++..+|......++.-+|-.+|-+++.+.|.+.++..+.+..
T Consensus 125 ~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 344566667777777777777777777777777666666666677777777777777666665554433
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.017 Score=38.15 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 271 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 271 ~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
+++.+|.++.+.|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556666666666666666666666666665
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.038 Score=59.02 Aligned_cols=143 Identities=12% Similarity=0.011 Sum_probs=118.8
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003891 178 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 257 (788)
Q Consensus 178 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 257 (788)
...|+.-.|-+-...++...|..+......+.++..+|.|+.+...+..+-..-.....+...+-.....+|++++|...
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 45688888888889999999999999999999999999999999888776655444445555666777889999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCC
Q 003891 258 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 320 (788)
Q Consensus 258 l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~ 320 (788)
.+-.+...-+++++..--+..-..+|-+++|.-++++.+.++|.....+.+.+-...|...|.
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcc
Confidence 998888777778777777777788899999999999999999988888888777777777765
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.66 E-value=4.4 Score=47.12 Aligned_cols=240 Identities=13% Similarity=0.045 Sum_probs=158.3
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HCCCHHHHHHH
Q 003891 38 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK---NRGDLESAIAC 114 (788)
Q Consensus 38 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~---~~g~~~~A~~~ 114 (788)
+.-++-+..+++-+.+++.+...+..|-.++...|++++-...-.++.++.|..+..|.....-.. ..++-.++...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 344556677777777888888889999999999999999888888888888888887766554333 23677788888
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCChHHHH
Q 003891 115 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH-------YADAMYNLGVAYGEMLKFDMAI 187 (788)
Q Consensus 115 ~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~ 187 (788)
|++++.-. +....|...+......+..+...++++.-...|.+++..-.. ....+......|...-..++-+
T Consensus 173 ~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~ 251 (881)
T KOG0128|consen 173 FEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVI 251 (881)
T ss_pred HHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99988644 344467777777777777777788999999999998865322 2334555666666666667777
Q ss_pred HHHHHHHhcCCCC---HHHHHHHH--H-HHHHcCCHHHHHHHH-------HHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003891 188 VFYELAFHFNPHC---AEACNNLG--V-IYKDRDNLDKAVECY-------QMALSIKPNFSQSLNNLGVVYTVQGKMDAA 254 (788)
Q Consensus 188 ~~~~~al~~~p~~---~~~~~~la--~-~~~~~g~~~eA~~~~-------~~al~~~p~~~~~~~~la~~~~~~g~~~eA 254 (788)
.++...+...-+. ...+.... . ......+++.|.+-+ ++.++..+.....|..+-......|+.-.-
T Consensus 252 a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri 331 (881)
T KOG0128|consen 252 ALFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRI 331 (881)
T ss_pred HHHHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHH
Confidence 7777776654111 11111111 1 112233444444443 333344444455666666777777887777
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHH
Q 003891 255 AEMIEKAIAANPTYAEAYNNLGVL 278 (788)
Q Consensus 255 ~~~l~kal~~~p~~~~~~~~la~~ 278 (788)
...+++++...+.+...|...+..
T Consensus 332 ~l~~eR~~~E~~~~~~~wi~y~~~ 355 (881)
T KOG0128|consen 332 QLIEERAVAEMVLDRALWIGYGVY 355 (881)
T ss_pred HHHHHHHHHhccccHHHHhhhhhh
Confidence 777888877777766666665544
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.47 Score=47.45 Aligned_cols=113 Identities=17% Similarity=0.141 Sum_probs=68.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--H
Q 003891 171 YNLGVAYGEMLKFDMAIVFYELAFHFNP------------HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS--Q 236 (788)
Q Consensus 171 ~~la~~~~~~g~~~~A~~~~~~al~~~p------------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~--~ 236 (788)
..+|.+|+..++|.+-.+.+++.-.... ...++|..-..+|..+++-.+-...|++++.+...-+ .
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 3578888888887777666665543311 1234555556677777777777888888887654322 2
Q ss_pred HH----HHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHH--HHHHHHHHHHHcC
Q 003891 237 SL----NNLGVVYTVQGKMDAAAEMIEKAIAANP-----TYAE--AYNNLGVLYRDAG 283 (788)
Q Consensus 237 ~~----~~la~~~~~~g~~~eA~~~l~kal~~~p-----~~~~--~~~~la~~~~~~g 283 (788)
+. -.=|..+.+.|++++|-.-|-.|++... .... -|.-||..+.+.|
T Consensus 229 ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 21 1224556777888888877777776532 2222 2444566665554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.52 E-value=3 Score=45.10 Aligned_cols=190 Identities=12% Similarity=0.040 Sum_probs=112.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------HHHHH-HCCCHHHH---HHHHHHHHhhCCCcHHHHHHHHH
Q 003891 65 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNM------GVIYK-NRGDLESA---IACYERCLAVSPNFEIAKNNMAI 134 (788)
Q Consensus 65 g~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~l------a~~~~-~~g~~~~A---~~~~~~al~~~p~~~~~~~~la~ 134 (788)
-....+.++..+|.+++.-...++|+.....-.+ -.+.. .-.++.+- +..++.+-..+-+ ...+..
T Consensus 305 Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD----rqQLvh 380 (549)
T PF07079_consen 305 LSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID----RQQLVH 380 (549)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc----HHHHHH
Confidence 3344567778888888877777777754211111 11111 11112222 2222222222222 223344
Q ss_pred HHHHhhhhhhhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH--HHHHHHhc---------CC---C
Q 003891 135 ALTDLGTKVKLEGD-INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV--FYELAFHF---------NP---H 199 (788)
Q Consensus 135 ~l~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~---------~p---~ 199 (788)
-+...+.-+...|. -++|++.++.+++..+.+.......-. +-...|.+|+. .+.+.+++ .| .
T Consensus 381 ~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~--fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~ 458 (549)
T PF07079_consen 381 YLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFL--FVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITIS 458 (549)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence 44555566666666 788999999999998887754332211 11122333321 12222211 12 2
Q ss_pred CHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 200 CAEACNNLG--VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 261 (788)
Q Consensus 200 ~~~~~~~la--~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~ka 261 (788)
+.+.-+.++ ..++.+|+|.++.-+-.=..++.| ++.++..+|.++...++|++|..++.+.
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 344555554 557789999999999888889999 8999999999999999999999998875
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.11 Score=44.93 Aligned_cols=92 Identities=13% Similarity=0.130 Sum_probs=74.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHH
Q 003891 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYA---PAYYNLGVVYSELMQ-----------YDTALGCYEKAALERPMYAEAY 95 (788)
Q Consensus 30 lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~-----------~~~A~~~~~kal~~~p~~~~~~ 95 (788)
++..++..|++-+|+++.++.+..++++. ..+...|.++..+.. .-.++++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 35667889999999999999999988765 556677877765432 3568889999999999998889
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhh
Q 003891 96 CNMGVIYKNRGDLESAIACYERCLAV 121 (788)
Q Consensus 96 ~~la~~~~~~g~~~~A~~~~~~al~~ 121 (788)
+.+|.-+-....|+++..-.++++.+
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 99988877777888888888887765
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.029 Score=37.00 Aligned_cols=29 Identities=28% Similarity=0.541 Sum_probs=12.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 003891 61 YYNLGVVYSELMQYDTALGCYEKAALERP 89 (788)
Q Consensus 61 ~~~lg~~~~~~g~~~~A~~~~~kal~~~p 89 (788)
++.+|.++...|++++|+..|+++++..|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 34444444444444444444444444444
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.93 Score=50.03 Aligned_cols=241 Identities=14% Similarity=0.107 Sum_probs=140.2
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHH
Q 003891 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH--YAPAYYNLGVVYSELMQYDTALGC 80 (788)
Q Consensus 3 i~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~ 80 (788)
.+.+.+.....|+++-. +...+..+...|+.+.|+..++..++..-. ..-.++.+|.++..+.+|..|...
T Consensus 253 ~~~Ll~~~~~~p~ga~w-------ll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~ 325 (546)
T KOG3783|consen 253 EKALKKYRKRYPKGALW-------LLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADS 325 (546)
T ss_pred HHHhHHHHHhCCCCccH-------HHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34555666777877655 455566667778888888888887761111 244678889999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHH-HHHHH--------CCCHHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhhhhhhhcCC
Q 003891 81 YEKAALERPMYAEAYCNMG-VIYKN--------RGDLESAIACYERCLA---VSPNFEIAKNNMAIALTDLGTKVKLEGD 148 (788)
Q Consensus 81 ~~kal~~~p~~~~~~~~la-~~~~~--------~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~l~~lg~~~~~~g~ 148 (788)
+....+.+.-.--.|..++ .|+.. .|+-++|..+++...+ ..|++..... .-
T Consensus 326 ~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~----------------f~ 389 (546)
T KOG3783|consen 326 FDLLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEK----------------FI 389 (546)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhH----------------HH
Confidence 9999887766554555544 44432 2355555555544332 2222211100 01
Q ss_pred HHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHH--cCChHHHHHHHHHHH---hc-CCCC-HHHHHHHHHHHHHcCCHHH
Q 003891 149 INQGVAYYKKALYYNWHYAD--AMYNLGVAYGE--MLKFDMAIVFYELAF---HF-NPHC-AEACNNLGVIYKDRDNLDK 219 (788)
Q Consensus 149 ~~~A~~~~~~al~~~p~~~~--~~~~la~~~~~--~g~~~~A~~~~~~al---~~-~p~~-~~~~~~la~~~~~~g~~~e 219 (788)
..++.++-.+.- .++.... .++.++..+.. ....++.+ -++..+ +. ++++ .--+..+|.++..+|+...
T Consensus 390 ~RKverf~~~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~ 467 (546)
T KOG3783|consen 390 VRKVERFVKRGP-LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEV 467 (546)
T ss_pred HHHHHHHhcccc-ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHH
Confidence 112222111110 1111111 12333333221 11222222 111111 11 2222 2345678999999999999
Q ss_pred HHHHHHHHHhhC---CC----CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC
Q 003891 220 AVECYQMALSIK---PN----FSQSLNNLGVVYTVQGK-MDAAAEMIEKAIAANPTY 268 (788)
Q Consensus 220 A~~~~~~al~~~---p~----~~~~~~~la~~~~~~g~-~~eA~~~l~kal~~~p~~ 268 (788)
|..+|+..++.. .. .|.+++.+|..+..++. ..++.+++.+|-+...++
T Consensus 468 a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 468 APKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 999999887431 11 25689999999999998 999999999998776543
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.67 Score=51.54 Aligned_cols=138 Identities=17% Similarity=0.081 Sum_probs=105.7
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 003891 38 GNTQDGIQKYYEALKIDPHYAPAYYN--LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACY 115 (788)
Q Consensus 38 g~~~~A~~~~~~al~~~p~~~~~~~~--lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 115 (788)
+....++..+...+..++.++..+.. +...+...+....+...+..++..+|.+..+..+|+......|....+...+
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 33344677777777778888776443 4777778888889999999999999999999999999888888776666655
Q ss_pred HH-HHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003891 116 ER-CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 176 (788)
Q Consensus 116 ~~-al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 176 (788)
.. +....|++......+...+. ++......++..++....+++....|.++.+...+...
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQ-LGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 55 88888888877666666665 78888888888888888888888888876655554444
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.23 E-value=1.2 Score=44.56 Aligned_cols=193 Identities=15% Similarity=0.143 Sum_probs=118.5
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhC-----CCCH-HHHHHHHHHHHH
Q 003891 106 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN-----WHYA-DAMYNLGVAYGE 179 (788)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~-~~~~~la~~~~~ 179 (788)
.+.++|+..|++.+++.+...+.-+ .++.++-.++...+++++-.+.|++.+..- .+.. .....+-..-..
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGF---KALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGF---KALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHH---HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 4788889999999888877553322 344555566666778888888877776431 1111 122222222223
Q ss_pred cCChHHHHHHHHHHHhc--CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------CHHHHHHH
Q 003891 180 MLKFDMAIVFYELAFHF--NPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN------------FSQSLNNL 241 (788)
Q Consensus 180 ~g~~~~A~~~~~~al~~--~p~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~------------~~~~~~~l 241 (788)
..+.+--.+.|+..+.. +..+ ......+|.+|+..++|.+-.+.+++.-+.+.. ..++|..-
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 33444444444444332 1122 233456899999999988887777766544221 12355555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCH--HH----HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 242 GVVYTVQGKMDAAAEMIEKAIAANPTYA--EA----YNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 242 a~~~~~~g~~~eA~~~l~kal~~~p~~~--~~----~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
...|..+++-.+-...|++++.+....| .+ .-.=|..+.+.|++++|-.-|-+|++-..+
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDE 263 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccc
Confidence 6778888998888899999998754332 22 122355677889999999888888876443
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.18 Score=42.54 Aligned_cols=50 Identities=28% Similarity=0.292 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 003891 254 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 303 (788)
Q Consensus 254 A~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~ 303 (788)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.++++.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~ 56 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE 56 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc
Confidence 35567778888888888888888888888888888888888888877763
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.039 Score=37.57 Aligned_cols=28 Identities=50% Similarity=0.845 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 003891 94 AYCNMGVIYKNRGDLESAIACYERCLAV 121 (788)
Q Consensus 94 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 121 (788)
++.+||.+|...|++++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678888888888888888888886644
|
|
| >cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS) | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.23 Score=51.96 Aligned_cols=95 Identities=19% Similarity=0.208 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCc
Q 003891 540 PKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGT 619 (788)
Q Consensus 540 ~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~ 619 (788)
++.+...++.+... +.++++.|.+ ..++..++..+..| ...-+.+.+... -.+....++.+|+++.+- +|
T Consensus 139 ~~~~~~l~~~l~~~-~~~ivl~g~~----~e~~~~~~i~~~~~-~~~~~~~~~~~~-l~e~~~li~~~~l~I~~D--sg- 208 (279)
T cd03789 139 AERFAALADRLLAR-GARVVLTGGP----AERELAEEIAAALG-GPRVVNLAGKTS-LRELAALLARADLVVTND--SG- 208 (279)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEech----hhHHHHHHHHHhcC-CCccccCcCCCC-HHHHHHHHHhCCEEEeeC--CH-
Confidence 34444445444444 6788888765 33333333333333 223345666654 688999999999998432 22
Q ss_pred hhHHHHhhhCCceeecCCCccCccch
Q 003891 620 TTTCESLYMGVPCVTMAGSVHAHNVG 645 (788)
Q Consensus 620 ~t~~eal~~GvPvvt~~g~~~~~r~~ 645 (788)
++-=|.++|+|+|++-|.+...+.+
T Consensus 209 -~~HlA~a~~~p~i~l~g~~~~~~~~ 233 (279)
T cd03789 209 -PMHLAAALGTPTVALFGPTDPARTG 233 (279)
T ss_pred -HHHHHHHcCCCEEEEECCCCccccC
Confidence 2333458899999999988777654
|
Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=95.16 E-value=8.7 Score=46.73 Aligned_cols=123 Identities=14% Similarity=0.073 Sum_probs=80.7
Q ss_pred HHHHHHHHHHcCCCChh---hHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003891 2 LVASYHKALSADPSYKP---AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 78 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~---a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 78 (788)
|+..|++.-...|+-.+ +....+.++...+........+++|+..|++.- -.|.-+--|...|.+|..+|+|++-+
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (932)
T PRK13184 494 ALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALVYQRLGEYNEEI 572 (932)
T ss_pred HHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHHHHHhhhHHHHH
Confidence 56667777777887554 545555555555544433346788888887743 35666778889999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHhhCCCc
Q 003891 79 GCYEKAALERPMYAEAYCNMGVIYKNR-----GDLESAIACYERCLAVSPNF 125 (788)
Q Consensus 79 ~~~~kal~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~ 125 (788)
++|.-+++..|+.+..-...-.+-.++ .+-..|....--++...|..
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 573 KSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEK 624 (932)
T ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999999999988765432222221111 12334555555666666654
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=95.09 E-value=8.9 Score=46.66 Aligned_cols=108 Identities=13% Similarity=0.086 Sum_probs=82.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003891 31 GTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSEL----M---QYDTALGCYEKAALERPMYAEAYCNMGV 100 (788)
Q Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~----g---~~~~A~~~~~kal~~~p~~~~~~~~la~ 100 (788)
..++...+.|++|+..|++.-...|.. -++.+..|.....+ | .+++|+..|++.- -.|.-+--|...|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence 355667788999999999999888775 56778888877653 2 4667777776643 35666778899999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 003891 101 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 139 (788)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l 139 (788)
+|..+|++++-+++|..|++..|+++......-.+.+.+
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRL 599 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 999999999999999999999999886544333333333
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.07 E-value=4.1 Score=41.33 Aligned_cols=272 Identities=11% Similarity=0.053 Sum_probs=153.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKIDP--------HYAPAYYNLGVVYSELMQYDTALGCYEKAALE-----RPMYAEA 94 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~-----~p~~~~~ 94 (788)
..+++-..+.+++++|+..|.+.+...- +...+...++.+|...|++..--+.....-+. .|....+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 3456666778999999999999987621 13457788999999999887655544433221 1222222
Q ss_pred HHHHHHHH-HHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh------CCCCH
Q 003891 95 YCNMGVIY-KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY------NWHYA 167 (788)
Q Consensus 95 ~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~ 167 (788)
...+...+ .....++.-+..+...++........... -..-..+...+.+.|.|.+|+....-.+.. .+...
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr-~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li 165 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLR-LELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI 165 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence 22222221 12345666666666666654332222111 122344566677788999998877666532 23344
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHH
Q 003891 168 DAMYNLGVAYGEMLKFDMAIVFYELAFHF-----NPHCAE--ACNNLGVIYKDRDNLDKAVECYQMALSIKP---NFSQS 237 (788)
Q Consensus 168 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~--~~~~la~~~~~~g~~~eA~~~~~~al~~~p---~~~~~ 237 (788)
.++..-..+|....+..++...+..+-.. .|.... .-..-|...+.-.+|.-|..+|-++++-.. .+..+
T Consensus 166 ~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kA 245 (421)
T COG5159 166 TVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKA 245 (421)
T ss_pred ehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHH
Confidence 56777778888888888877777665443 232222 223335666777889999999998887532 23333
Q ss_pred HHHHHHHH---HHcCCHHHHHHHHH--HHHH-hCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhhCC
Q 003891 238 LNNLGVVY---TVQGKMDAAAEMIE--KAIA-ANPTYAEAYNNLGVLYR--DAGSISLAIDAYEQCLKIDP 300 (788)
Q Consensus 238 ~~~la~~~---~~~g~~~eA~~~l~--kal~-~~p~~~~~~~~la~~~~--~~g~~~eA~~~~~~al~l~p 300 (788)
...+-..+ ...+..++-...++ ..++ .+....++....+..+. .+.+|..|++.|+.-+..+|
T Consensus 246 c~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~ 316 (421)
T COG5159 246 CVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDS 316 (421)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCH
Confidence 32222211 12233333222221 1222 12233445555555553 34567777777777665554
|
|
| >PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3 | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.033 Score=62.42 Aligned_cols=113 Identities=17% Similarity=0.117 Sum_probs=64.9
Q ss_pred HHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhC---Ccc--cccC-------CHHH
Q 003891 598 HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVG---LKH--LIAK-------NEDE 664 (788)
Q Consensus 598 ~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~g---l~~--~ia~-------~~~~ 664 (788)
-+|-.....||+.+-|+-| .=|-|-+|+.+||||.||-.-..| |.-+...++ -.+ .|-. +.++
T Consensus 461 l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGF----G~~~~~~~~~~~~~GV~VvdR~~~n~~e~v~~ 536 (633)
T PF05693_consen 461 LDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGF----GCWMQEHIEDPEEYGVYVVDRRDKNYDESVNQ 536 (633)
T ss_dssp S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHH----HHHHHTTS-HHGGGTEEEE-SSSS-HHHHHHH
T ss_pred CCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhH----HHHHHHhhccCcCCcEEEEeCCCCCHHHHHHH
Confidence 3455566679999999988 779999999999999999332111 101111111 011 2222 3444
Q ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHh
Q 003891 665 YVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYC 717 (788)
Q Consensus 665 y~~~a~~l~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 717 (788)
+.+....++. +...+..+|.+.+ + -|.++|++.|....+++|.-+.++-.
T Consensus 537 la~~l~~f~~~~~rqri~~Rn~ae-~--LS~~~dW~~~~~yY~~Ay~~AL~~a~ 587 (633)
T PF05693_consen 537 LADFLYKFCQLSRRQRIIQRNRAE-R--LSDLADWKNFGKYYEKAYDLALRRAY 587 (633)
T ss_dssp HHHHHHHHHT--HHHHHHHHHHHH-H--HGGGGBHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH-H--HHHhCCHHHHHHHHHHHHHHHHHhcC
Confidence 4444444443 4445555555543 2 26778999999999999999988753
|
Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.99 E-value=13 Score=48.55 Aligned_cols=81 Identities=11% Similarity=0.165 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003891 217 LDKAVECYQMALSI-------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 289 (788)
Q Consensus 217 ~~eA~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~ 289 (788)
..+-+-.+++++-. +....+.|...|++....|+++.|..++-+|.+.. -++++...|+.+...|+-..|+
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHH
Confidence 45555555555422 23346799999999999999999999999998776 5789999999999999999999
Q ss_pred HHHHHHHhhC
Q 003891 290 DAYEQCLKID 299 (788)
Q Consensus 290 ~~~~~al~l~ 299 (788)
..+++.++.+
T Consensus 1723 ~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1723 SVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHhh
Confidence 9999999653
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=94.95 E-value=7.3 Score=42.87 Aligned_cols=39 Identities=13% Similarity=0.121 Sum_probs=26.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 243 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 281 (788)
Q Consensus 243 ~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~ 281 (788)
.-|....++++|+..+...++.+..+..+..++...+..
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 335556778888888888888777776666665555444
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.069 Score=39.85 Aligned_cols=36 Identities=25% Similarity=0.282 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhH
Q 003891 271 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 271 ~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
.++.+|..+.++|+|++|..+.+.+++++|+|..+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 456677777777777777777777777777776664
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.88 E-value=5.6 Score=41.51 Aligned_cols=273 Identities=11% Similarity=0.020 Sum_probs=167.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHh--CCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC--CCH
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKI--DPHY--------APAYYNLGVVYSELMQYDTALGCYEKAALE---RP--MYA 92 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~--------~~~~~~lg~~~~~~g~~~~A~~~~~kal~~---~p--~~~ 92 (788)
...+......+++++++..|.+.+.. .|.+ ......+|..|.+.|++++-....+..-.. -+ ...
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 44455556667789999999998874 2221 346788999999999988776666554322 11 112
Q ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh----C--CC
Q 003891 93 EAYCNMGVIYK-NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY----N--WH 165 (788)
Q Consensus 93 ~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~----~--p~ 165 (788)
.....+-.... ..+..+.-+..+..+++.......... .-..-..+...|...++|.+|+......+.. + +.
T Consensus 88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFL-Rq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~l 166 (411)
T KOG1463|consen 88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFL-RQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKIL 166 (411)
T ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence 22222222222 234455566666666665433322211 1223345666777888999999887776643 2 12
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCH
Q 003891 166 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-----PHC--AEACNNLGVIYKDRDNLDKAVECYQMALSIKP---NFS 235 (788)
Q Consensus 166 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p---~~~ 235 (788)
-.+++..-..+|+...+..+|...+..|-... |.. ...-..-|.++....+|.-|..+|-+|++-.. ++.
T Consensus 167 Lvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v 246 (411)
T KOG1463|consen 167 LVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDV 246 (411)
T ss_pred eeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcH
Confidence 23456667788888899999888887765431 211 22233346667777899999999999987632 223
Q ss_pred HHH---HHHHHHHHHcCCHHHH--HHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCC
Q 003891 236 QSL---NNLGVVYTVQGKMDAA--AEMIEKAIAANPTYAEAYNNLGVLYRD--AGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 236 ~~~---~~la~~~~~~g~~~eA--~~~l~kal~~~p~~~~~~~~la~~~~~--~g~~~eA~~~~~~al~l~p~ 301 (788)
.+. -.+-.+-...+..++- +-.-+.+++....+.++....+..+.+ +.+|+.|+.-|+.-+..+|=
T Consensus 247 ~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 247 KALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 332 2333333445555543 334455666666677888888888754 56788999988888877663
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.85 E-value=1 Score=50.70 Aligned_cols=192 Identities=11% Similarity=0.079 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH---HHhhhhhhhcCCHH
Q 003891 74 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL---TDLGTKVKLEGDIN 150 (788)
Q Consensus 74 ~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l---~~lg~~~~~~g~~~ 150 (788)
.++|+++. +.+| ++..|..+|......-.++.|...|-++-.. +... ....+..++ .+.+.+-.--|+++
T Consensus 679 ledA~qfi----EdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik-~vkrl~~i~s~~~q~aei~~~~g~fe 751 (1189)
T KOG2041|consen 679 LEDAIQFI----EDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIK-LVKRLRTIHSKEQQRAEISAFYGEFE 751 (1189)
T ss_pred hHHHHHHH----hcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchh-HHHHhhhhhhHHHHhHhHhhhhcchh
Confidence 45555443 3445 4899999999998888888888887765322 1111 111111111 11222333346888
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 151 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP--HCAEACNNLGVIYKDRDNLDKAVECYQMAL 228 (788)
Q Consensus 151 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~eA~~~~~~al 228 (788)
+|.+.|-.+-..+ ....++.+.|+|-...++++..-.-.. ....++.++|..+..+..|++|.++|.+.-
T Consensus 752 eaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 752 EAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred Hhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8888775442211 112344556666666555554322111 124577788888888888888888877642
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 229 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 292 (788)
Q Consensus 229 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 292 (788)
. .-++..+++...+|++-. .....-|++...+-.+|..+...|.-++|.+.|
T Consensus 824 ~--------~e~~~ecly~le~f~~LE----~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 824 D--------TENQIECLYRLELFGELE----VLARTLPEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred c--------hHhHHHHHHHHHhhhhHH----HHHHhcCcccchHHHHHHHHHhhchHHHHHHHH
Confidence 2 123444555555544432 222223444444555555555555555555444
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.25 Score=53.63 Aligned_cols=90 Identities=12% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhC
Q 003891 221 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS-ISLAIDAYEQCLKID 299 (788)
Q Consensus 221 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~-~~eA~~~~~~al~l~ 299 (788)
...|+.++...+.+...|........+.+.+.+-...|.+++..+|++++.|..-|.-.+.-+. .+.|...|.++++.+
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Q ss_pred CCChhhHHhHH
Q 003891 300 PDSRNAGQNRL 310 (788)
Q Consensus 300 p~~~~a~~~~l 310 (788)
|+++..+..+.
T Consensus 171 pdsp~Lw~eyf 181 (568)
T KOG2396|consen 171 PDSPKLWKEYF 181 (568)
T ss_pred CCChHHHHHHH
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.54 Score=43.85 Aligned_cols=97 Identities=13% Similarity=0.058 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~ 105 (788)
.+......-...++.+++...+...--+.|+.++.-..-|.++...|++.+|+..++.+.+..|..+.+--.++.|+..+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 35555566677788888888888888888999888888899999999999999999998888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhhCC
Q 003891 106 GDLESAIACYERCLAVSP 123 (788)
Q Consensus 106 g~~~~A~~~~~~al~~~p 123 (788)
++.+ =..+-+++++..+
T Consensus 92 ~D~~-Wr~~A~evle~~~ 108 (160)
T PF09613_consen 92 GDPS-WRRYADEVLESGA 108 (160)
T ss_pred CChH-HHHHHHHHHhcCC
Confidence 7743 2223344444443
|
|
| >PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.038 Score=52.95 Aligned_cols=93 Identities=19% Similarity=0.251 Sum_probs=58.9
Q ss_pred CcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCcc---CccchhHHHhhhCCccccc--
Q 003891 586 LRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVH---AHNVGVSLLTKVGLKHLIA-- 659 (788)
Q Consensus 586 ~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~---~~r~~~~~l~~~gl~~~ia-- 659 (788)
.+|.+.+..++ +..++..+|+++ . +|+.|+.|++++|+|.|..+-... ....-+..+...|....+.
T Consensus 55 ~~v~~~~~~~~---m~~~m~~aDlvI----s~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~ 127 (167)
T PF04101_consen 55 PNVKVFGFVDN---MAELMAAADLVI----SHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDES 127 (167)
T ss_dssp CCCEEECSSSS---HHHHHHHHSEEE----ECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECC
T ss_pred CcEEEEechhh---HHHHHHHcCEEE----eCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCcc
Confidence 57888888664 445555599998 5 667899999999999888775541 2333445566666654442
Q ss_pred -CCHHHHHHHHHHHhcCHHHHHHHHHH
Q 003891 660 -KNEDEYVQLALQLASDVTALANLRMS 685 (788)
Q Consensus 660 -~~~~~y~~~a~~l~~d~~~~~~~r~~ 685 (788)
.+++...+....+..++..+..+.+.
T Consensus 128 ~~~~~~L~~~i~~l~~~~~~~~~~~~~ 154 (167)
T PF04101_consen 128 ELNPEELAEAIEELLSDPEKLKEMAKA 154 (167)
T ss_dssp C-SCCCHHHHHHCHCCCHH-SHHHCCC
T ss_pred cCCHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 23667788888888888775555444
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B. |
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.28 Score=42.50 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 253 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 253 eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
.+++.+.++..+.|..+..++.+|.-+.....|+++..-.++++.+
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 4567777777777777777777777666666667777666666654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.65 E-value=1.8 Score=40.64 Aligned_cols=115 Identities=10% Similarity=0.001 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--C--HHHHHHHHHHHHHcCCHHHHH
Q 003891 148 DINQGVAYYKKALYYNWHYA--DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--C--AEACNNLGVIYKDRDNLDKAV 221 (788)
Q Consensus 148 ~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~--~~~~~~la~~~~~~g~~~eA~ 221 (788)
..++|+..|...-+..-... -+.+..+.+..+.|+...|+..|.++-...+- - ..+...-+.++...|.|++-.
T Consensus 73 k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~ 152 (221)
T COG4649 73 KTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVS 152 (221)
T ss_pred CchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHH
Confidence 44444444444443322221 13344455555555555555555554433221 1 112233344444445444443
Q ss_pred HHHHHHH-hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 222 ECYQMAL-SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 262 (788)
Q Consensus 222 ~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal 262 (788)
...+..- ..+|-...+.-.||..-.+.|++.+|.++|++..
T Consensus 153 srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 153 SRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 3333211 1122222233344444444444444444444443
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.19 Score=51.87 Aligned_cols=70 Identities=14% Similarity=0.212 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhH
Q 003891 237 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 237 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
.+.++-.+|.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|..-++..++..|+++.+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 4556667777888888888888888888888887777888888888888888888888888888777664
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.16 Score=37.87 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=12.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 003891 62 YNLGVVYSELMQYDTALGCYEKAALERPMYAE 93 (788)
Q Consensus 62 ~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~ 93 (788)
+.+|..++++|+|++|..+.+.+++..|++.+
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 33444444444444444444444444444333
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.6 Score=43.57 Aligned_cols=83 Identities=16% Similarity=0.128 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003891 203 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 282 (788)
Q Consensus 203 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~ 282 (788)
.+..+...-...++.+++...+.-.--+.|..++.-..-|+++...|++.+|+..++......|..+.+--.++.|+..+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 33444444455566666666666666666666666666666667777777777777766666666666666666666666
Q ss_pred CCH
Q 003891 283 GSI 285 (788)
Q Consensus 283 g~~ 285 (788)
|+.
T Consensus 92 ~D~ 94 (160)
T PF09613_consen 92 GDP 94 (160)
T ss_pred CCh
Confidence 664
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.44 E-value=7.4 Score=40.64 Aligned_cols=48 Identities=13% Similarity=0.112 Sum_probs=28.0
Q ss_pred HHHHHHHHHHc--CCC-ChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003891 2 LVASYHKALSA--DPS-YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 49 (788)
Q Consensus 2 Ai~~~~kaL~~--~P~-~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~ 49 (788)
++..|.+.+.. -|. +.......-.....+|..+.+.|+.++-......
T Consensus 23 ~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~ 73 (411)
T KOG1463|consen 23 AINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITS 73 (411)
T ss_pred hHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 45566666653 222 2233333445567888999999988765544433
|
|
| >COG4370 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.038 Score=55.84 Aligned_cols=118 Identities=16% Similarity=0.174 Sum_probs=85.6
Q ss_pred cCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCC--ccCccchhHHHhhhCCcccc
Q 003891 581 LGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGS--VHAHNVGVSLLTKVGLKHLI 658 (788)
Q Consensus 581 ~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~--~~~~r~~~~~l~~~gl~~~i 658 (788)
+|-+.-+++|. ++.|-.+++.+|+.| =..||.+=++.-.|+|||..+|. .+.-=.+..-.+-+|+.=..
T Consensus 291 ~~kdnc~l~ls-----qqsfadiLH~adaal----gmAGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltl 361 (412)
T COG4370 291 FGKDNCSLWLS-----QQSFADILHAADAAL----GMAGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTL 361 (412)
T ss_pred hccCceEEEEe-----HHHHHHHHHHHHHHH----HhccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeee
Confidence 34443455542 567778888899987 46789999999999999999974 22222233334667777655
Q ss_pred cCCHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 003891 659 AKNEDEYVQLALQ-LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 713 (788)
Q Consensus 659 a~~~~~y~~~a~~-l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 713 (788)
...++.-.+.+++ +..|++.+.++|.+-++|+.+ .+.++++.+...+||
T Consensus 362 v~~~aq~a~~~~q~ll~dp~r~~air~nGqrRiGq------aGaa~rIAe~l~e~a 411 (412)
T COG4370 362 VRPEAQAAAQAVQELLGDPQRLTAIRHNGQRRIGQ------AGAARRIAEELGEMA 411 (412)
T ss_pred cCCchhhHHHHHHHHhcChHHHHHHHhcchhhccC------cchHHHHHHHHHHhc
Confidence 6666666777777 999999999999998888753 457778887777776
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.065 Score=34.33 Aligned_cols=31 Identities=39% Similarity=0.673 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 271 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 271 ~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
++..+|.++..+|++++|...++++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4566677777777777777777777666654
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.56 Score=48.39 Aligned_cols=70 Identities=19% Similarity=0.103 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHH
Q 003891 60 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 129 (788)
Q Consensus 60 ~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 129 (788)
.+.++-.+|.+.++++.|+.+.+..+...|+++.-+...|.+|.+.|.+..|..-++..++..|+++.+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 3455566677777777777777777777777777777777777777777777777777777777766543
|
|
| >TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.88 Score=49.27 Aligned_cols=112 Identities=12% Similarity=0.045 Sum_probs=62.3
Q ss_pred CCCeEEEecCC-CCcCCH-HHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCc-EEEcCCcCCcHHH
Q 003891 524 NGFITFGSFNN-LAKITP-KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLR-VDLLPLILLNHDH 600 (788)
Q Consensus 524 ~~~~~f~~~~~-~~K~~~-~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~r-v~~~~~~~~~~~~ 600 (788)
...|+++...+ ..|.=| +-+...++.+.. .+..++|.|++.. ..++.. +.+.+. ....+ +.+.|... -.+.
T Consensus 181 ~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~-~~~~ivl~g~p~~--~e~~~~-~~i~~~-~~~~~~~~l~g~~s-L~el 254 (344)
T TIGR02201 181 QNYIVIQPTSRWFFKCWDNDRFSALIDALHA-RGYEVVLTSGPDK--DELAMV-NEIAQG-CQTPRVTSLAGKLT-LPQL 254 (344)
T ss_pred CCEEEEeCCCCccccCCCHHHHHHHHHHHHh-CCCeEEEecCCCH--HHHHHH-HHHHhh-CCCCcccccCCCCC-HHHH
Confidence 34555655443 334333 333333333322 3567788776521 122222 223222 22233 44677765 6899
Q ss_pred HHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccch
Q 003891 601 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 645 (788)
Q Consensus 601 ~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 645 (788)
.+.++.||+++.. -+| .+==|-++|+|+|++-|.+...+++
T Consensus 255 ~ali~~a~l~Vs~--DSG--p~HlAaA~g~p~v~Lfgpt~p~~~~ 295 (344)
T TIGR02201 255 AALIDHARLFIGV--DSV--PMHMAAALGTPLVALFGPSKHIFWR 295 (344)
T ss_pred HHHHHhCCEEEec--CCH--HHHHHHHcCCCEEEEECCCCccccc
Confidence 9999999999832 222 3334778999999999987666554
|
This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=94.18 E-value=11 Score=41.58 Aligned_cols=228 Identities=11% Similarity=0.032 Sum_probs=130.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 003891 54 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 133 (788)
Q Consensus 54 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 133 (788)
.|-+...+..+-.++.....+.-....+.+++.... +..+++.++.+|... ..++-...+++..+.+-++...-..++
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 445555666666666666666777777777777653 467788888888887 556667777887777766654333333
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHhC-CCC--H---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CHH-HHH
Q 003891 134 IALTDLGTKVKLEGDINQGVAYYKKALYYN-WHY--A---DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-CAE-ACN 205 (788)
Q Consensus 134 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~--~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~-~~~ 205 (788)
..| .+ .+.+++..+|.+++... |.. . +.|..+-. +--.+.+.-+....+.-..... ... ++.
T Consensus 140 ~~y-------Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~q 209 (711)
T COG1747 140 DKY-------EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQ 209 (711)
T ss_pred HHH-------HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHH
Confidence 332 22 57778888888877542 211 1 12222111 1122333333333333222211 122 222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 003891 206 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 285 (788)
Q Consensus 206 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~ 285 (788)
.+-.-|....++++|+..+...++.+..+..+.-++..-+...-+ +-.+.+-|.....+-..-.++
T Consensus 210 dv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~--------------~~~~~e~yl~~s~i~~~~rnf 275 (711)
T COG1747 210 DVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYR--------------GHSQLEEYLKISNISQSGRNF 275 (711)
T ss_pred HHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhc--------------cchhHHHHHHhcchhhccccH
Confidence 233455667789999999998888887776666555544332110 111223344444444455678
Q ss_pred HHHHHHHHHHHhhCCCChhhHH
Q 003891 286 SLAIDAYEQCLKIDPDSRNAGQ 307 (788)
Q Consensus 286 ~eA~~~~~~al~l~p~~~~a~~ 307 (788)
.+++.-|++.+..+..|--.++
T Consensus 276 ~~~l~dFek~m~f~eGnFVfHq 297 (711)
T COG1747 276 FEALNDFEKLMHFDEGNFVFHQ 297 (711)
T ss_pred HHHHHHHHHHheeccCceEEec
Confidence 8888899999888877655443
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.43 Score=40.25 Aligned_cols=64 Identities=16% Similarity=0.238 Sum_probs=34.7
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCC
Q 003891 221 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDAGS 284 (788)
Q Consensus 221 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~--~~~~~~la~~~~~~g~ 284 (788)
+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++..+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 445566666666666666666666666666666666666666665543 3333344444444443
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.41 Score=47.70 Aligned_cols=54 Identities=20% Similarity=0.137 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHH
Q 003891 105 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 158 (788)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~ 158 (788)
...+++|++.|.-|+-...-.......+|.++..++.+|...++.++...++++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~ 143 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRK 143 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 446777777777766432111111124456666666666666664444333333
|
|
| >PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.086 Score=54.09 Aligned_cols=206 Identities=14% Similarity=0.150 Sum_probs=89.5
Q ss_pred HHHHHHHhCCCcEEEeCCCCCCCCccccccc-CCCCeEEecccCCCCCCCCCccEEEecCCCCCcCccCCC--ccceEEc
Q 003891 424 KVAAMVREDKIDILVELTGHTANNKLGMMAC-QPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKH--VEELIRL 500 (788)
Q Consensus 424 ~~a~~i~~d~idilvdl~g~t~~~~~~~~a~-r~Apvq~~~~g~~~ttg~~~~Dy~i~d~~~~p~~~~~~~--~e~l~~l 500 (788)
.+.+.||+.+.|++||+.+.. +..+++. --||.-+.+-+... .+.-..+..+.... .+...+.++ -+.++-+
T Consensus 3 ~l~~~Lr~~~yD~vid~~~~~---~s~~l~~~~~a~~riG~~~~~~-~~~~~~~~~~~~~~-~~~~v~~~~~ll~~~~~~ 77 (247)
T PF01075_consen 3 ALIKKLRKEKYDLVIDLQGSF---RSALLARLSGAKIRIGFGKDDR-GRSLFYNRKVDRPP-NKHMVDRYLSLLSELLGI 77 (247)
T ss_dssp HHHHHHCTSB-SEEEE-S-SH---HHHHHTCCCSBSEEEEE-TTTS-GGGGGESEEE-TTS-SSSHHHHHHHHHHHHHTS
T ss_pred HHHHHHhCCCCCEEEECCCCc---cHHHHHHHHhhccccccCccch-hhhhcccccccccc-cchHHHHHHHHHHHhcCC
Confidence 478899999999999997753 3333332 45677777644433 11112222222211 111111110 1111111
Q ss_pred CCCcc--ccCCCCCC-CCCCCCC-CCCCCCeEEEecCCC-CcC-CHHHHHHHHHHHhHcCCcEEEEecCCCCCHHH-HHH
Q 003891 501 PECFL--CYTPSPEA-GPVCPTP-ALTNGFITFGSFNNL-AKI-TPKVLQVWARILCAVPNSRLVVKCKPFCCDSV-RHR 573 (788)
Q Consensus 501 p~~~~--~~~~~~~~-~~~~~~~-~~~~~~~~f~~~~~~-~K~-~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~-~~~ 573 (788)
|.... .+.++.+. ....... ......|+|.-.++. .|. ..+.+..+++-+.... ..++|.|++ .. ...
T Consensus 78 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~-~~vvl~g~~----~~~~~~ 152 (247)
T PF01075_consen 78 PYPSTKPELPLSEEEEAAARELLKSKDKPYIGINPGASWPSKRWPAEKWAELIERLKERG-YRVVLLGGP----EEQEKE 152 (247)
T ss_dssp -SSSSSS----THHHHTTHHTTTT-TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT--EEEE--SS----HHHHHH
T ss_pred CCCCCCcCCcCCHHHHHHHHHhhhhccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhC-ceEEEEccc----hHHHHH
Confidence 11100 00000000 0000111 123344545443333 444 3344444444444333 567777766 22 122
Q ss_pred HHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccch
Q 003891 574 FLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 645 (788)
Q Consensus 574 l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 645 (788)
..+.+.+ +.....+.+.+... -.+..+....||+++ .+-+-.+==|-++|+|+|++-|.+...+.+
T Consensus 153 ~~~~~~~-~~~~~~~~~~~~~~-l~e~~ali~~a~~~I----~~Dtg~~HlA~a~~~p~v~lfg~t~~~~~~ 218 (247)
T PF01075_consen 153 IADQIAA-GLQNPVINLAGKTS-LRELAALISRADLVI----GNDTGPMHLAAALGTPTVALFGPTNPERWG 218 (247)
T ss_dssp HHHHHHT-THTTTTEEETTTS--HHHHHHHHHTSSEEE----EESSHHHHHHHHTT--EEEEESSS-HHHHS
T ss_pred HHHHHHH-hcccceEeecCCCC-HHHHHHHHhcCCEEE----ecCChHHHHHHHHhCCEEEEecCCCHHHhC
Confidence 2222222 33323577778765 789999999999997 222223334677999999999988766655
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.083 Score=51.49 Aligned_cols=66 Identities=29% Similarity=0.504 Sum_probs=58.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHh
Q 003891 243 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 308 (788)
Q Consensus 243 ~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 308 (788)
....+.++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|.+.|++.++++|++.....-
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~ 68 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAAL 68 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhh
Confidence 345678899999999999999999999999999999999999999999999999999998765443
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.45 Score=57.70 Aligned_cols=162 Identities=20% Similarity=0.197 Sum_probs=122.1
Q ss_pred HHhhhhhhhcCCHHHHHH------HHHHH-HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCCH
Q 003891 137 TDLGTKVKLEGDINQGVA------YYKKA-LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------NPHCA 201 (788)
Q Consensus 137 ~~lg~~~~~~g~~~~A~~------~~~~a-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~ 201 (788)
...|......+.+.+|.+ ++... -.+.|+....+..++.++...+++++|+..-.++.-+ .|+..
T Consensus 936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence 334444455667776666 44422 2346777888999999999999999999988877654 34557
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------
Q 003891 202 EACNNLGVIYKDRDNLDKAVECYQMALSI--------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------ 267 (788)
Q Consensus 202 ~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~------ 267 (788)
..+.+++...+..++...|...+.++..+ .|.-.....+++.++...++++.|+.+++.|++.+..
T Consensus 1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~ 1095 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKE 1095 (1236)
T ss_pred HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccc
Confidence 78889998888999999999999988775 3555567788899999999999999999999986422
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 268 --YAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 268 --~~~~~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
....+..++.++..++++..|....+....+
T Consensus 1096 l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1096 LETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 2455667788888888888777776666543
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=93.97 E-value=1.9 Score=37.70 Aligned_cols=99 Identities=16% Similarity=0.134 Sum_probs=72.9
Q ss_pred HHHHHHHH--HHHHHHcCChHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Q 003891 23 LAIVLTDL--GTSLKLAGNTQDGIQKYYEALKIDPH------------YAPAYYNLGVVYSELMQYDTALGCYEKAAL-- 86 (788)
Q Consensus 23 la~~l~~l--g~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~kal~-- 86 (788)
.+..|..+ |...+..|.|++|...++++.+.... ++-++..|+..+..+|+|++++...++++.
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 34445544 44556779999999999999987422 255778899999999999999988888875
Q ss_pred -----hCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 003891 87 -----ERPMY----AEAYCNMGVIYKNRGDLESAIACYERCLAV 121 (788)
Q Consensus 87 -----~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 121 (788)
++.+. ..+.+..+..+...|+.++|+..|+.+-+.
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 34443 345577888999999999999999988654
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.86 Score=50.95 Aligned_cols=104 Identities=21% Similarity=0.167 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 003891 19 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 92 (788)
Q Consensus 19 a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~ 92 (788)
....+-.++.+.+...++..+|..+++.|...+..-|.+ +.....++.||..+.+.+.|.+++++|-+.+|.++
T Consensus 349 ~~~~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~ 428 (872)
T KOG4814|consen 349 AISCIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP 428 (872)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH
Confidence 333455567778888889999999999999998876654 55677889999999999999999999999999998
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Q 003891 93 EAYCNMGVIYKNRGDLESAIACYERCLAVS 122 (788)
Q Consensus 93 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 122 (788)
-.....-.+....++-++|+....+.....
T Consensus 429 l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 429 LCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 888888888888999999999888776553
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.98 Score=39.47 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 237 SLNNLGVVYTVQGKMDAAAEMIEKAIA-------ANPTYAE----AYNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 237 ~~~~la~~~~~~g~~~eA~~~l~kal~-------~~p~~~~----~~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
.+..|+..+..+|+|++++...++++. ++.+... +-++.+..+...|+.++|+..|+++-++
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 444555556666666655555554443 3444333 3456777788888888888888877653
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PRK14089 ipid-A-disaccharide synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.36 Score=51.96 Aligned_cols=78 Identities=15% Similarity=0.174 Sum_probs=48.3
Q ss_pred CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCC
Q 003891 536 AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP 615 (788)
Q Consensus 536 ~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~ 615 (788)
.++.|.++++..++.+.. .++++.+.. . .+.+++..... ..+.+.+ +-...+..||++|
T Consensus 182 ~~llP~~~~aa~~L~~~~--~~~~i~~a~----~-~~~i~~~~~~~----~~~~~~~------~~~~~m~~aDlal---- 240 (347)
T PRK14089 182 KRLMPIFKELAKKLEGKE--KILVVPSFF----K-GKDLKEIYGDI----SEFEISY------DTHKALLEAEFAF---- 240 (347)
T ss_pred HHHHHHHHHHHHHHhhcC--cEEEEeCCC----c-HHHHHHHHhcC----CCcEEec------cHHHHHHhhhHHH----
Confidence 356677788877776653 455554432 1 14444444321 1233433 1234567799999
Q ss_pred CCCchhHHHHhhhCCceee
Q 003891 616 YAGTTTTCESLYMGVPCVT 634 (788)
Q Consensus 616 ~~g~~t~~eal~~GvPvvt 634 (788)
...||+|+|++.+|+|.|.
T Consensus 241 ~~SGT~TLE~al~g~P~Vv 259 (347)
T PRK14089 241 ICSGTATLEAALIGTPFVL 259 (347)
T ss_pred hcCcHHHHHHHHhCCCEEE
Confidence 6678888899999999887
|
|
| >PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.2 Score=52.19 Aligned_cols=91 Identities=21% Similarity=0.178 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHc-CCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC
Q 003891 538 ITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQL-GLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY 616 (788)
Q Consensus 538 ~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~-gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~ 616 (788)
....+.++...+++..|+..|+++-.|........ +.+.+. +.. .++.+..... ..+ ++..||.++ .
T Consensus 138 ~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~-~~~---Ll~~s~~Vv----t 205 (269)
T PF05159_consen 138 SQADFLDMLESFAKENPDAKLVVKPHPDERGGNKY---SYLEELPNLP-NVVIIDDDVN-LYE---LLEQSDAVV----T 205 (269)
T ss_pred cHhHHHHHHHHHHHHCCCCEEEEEECchhhCCCCh---hHhhhhhcCC-CeEEECCCCC-HHH---HHHhCCEEE----E
Confidence 44567788888889999999999876621111111 222222 222 4454444433 344 445588887 5
Q ss_pred CCchhHHHHhhhCCceeecCCCcc
Q 003891 617 AGTTTTCESLYMGVPCVTMAGSVH 640 (788)
Q Consensus 617 ~g~~t~~eal~~GvPvvt~~g~~~ 640 (788)
-.+|+.+|||.+|.||||+.-..+
T Consensus 206 inStvGlEAll~gkpVi~~G~~~Y 229 (269)
T PF05159_consen 206 INSTVGLEALLHGKPVIVFGRAFY 229 (269)
T ss_pred ECCHHHHHHHHcCCceEEecCccc
Confidence 678899999999999999544433
|
Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.65 Score=46.25 Aligned_cols=67 Identities=21% Similarity=0.268 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Q 003891 58 APAYYNLGVVYSELMQYD-------TALGCYEKAALERP------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124 (788)
Q Consensus 58 ~~~~~~lg~~~~~~g~~~-------~A~~~~~kal~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 124 (788)
+..+..+|.+|...|+.+ .|++.|+++++... +.....+.+|.++.+.|++++|.++|.+++.....
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 456667777777777744 34444444444321 12457777888888888888888888888775433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.83 Score=44.08 Aligned_cols=103 Identities=14% Similarity=0.043 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 003891 58 APAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 134 (788)
Q Consensus 58 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 134 (788)
-.++..+|..|.+.|+.++|++.|.++.+.... ..+.+..+..+....+++.....+..++-....... .+.....
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~-d~~~~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGG-DWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc-hHHHHHH
Confidence 457889999999999999999999998775433 356778888899999999999999988876644321 1222222
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHH
Q 003891 135 ALTDLGTKVKLEGDINQGVAYYKKALY 161 (788)
Q Consensus 135 ~l~~lg~~~~~~g~~~~A~~~~~~al~ 161 (788)
+....|..+...++|.+|.+.|-.+..
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 222233334446677777666665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.72 Score=49.16 Aligned_cols=136 Identities=17% Similarity=0.229 Sum_probs=80.7
Q ss_pred CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCC
Q 003891 536 AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP 615 (788)
Q Consensus 536 ~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~ 615 (788)
.+..|-++++..++..+.|+.++++-..+ ..-++++..+.......-.+++.. .+-...+..||+.|
T Consensus 203 ~rl~~~f~~a~~~l~~~~~~~~~vlp~~~----~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~a~~~aD~al---- 269 (381)
T COG0763 203 RRLLPPFVQAAQELKARYPDLKFVLPLVN----AKYRRIIEEALKWEVAGLSLILID-----GEKRKAFAAADAAL---- 269 (381)
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEecCc----HHHHHHHHHHhhccccCceEEecC-----chHHHHHHHhhHHH----
Confidence 56778889998888889999999996443 332344444333222111222222 23344566699998
Q ss_pred CCCchhHHHHhhhCCceeecCCCccCccchhHHH------hhhCCcccccC------------CHHHHHHHHHHHhcCHH
Q 003891 616 YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL------TKVGLKHLIAK------------NEDEYVQLALQLASDVT 677 (788)
Q Consensus 616 ~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l------~~~gl~~~ia~------------~~~~y~~~a~~l~~d~~ 677 (788)
-..||.++|++.+|+|.|...--.. ++.-|. ...+||.+++. .++...+....|..|..
T Consensus 270 ~aSGT~tLE~aL~g~P~Vv~Yk~~~---it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~ 346 (381)
T COG0763 270 AASGTATLEAALAGTPMVVAYKVKP---ITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGD 346 (381)
T ss_pred HhccHHHHHHHHhCCCEEEEEeccH---HHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChH
Confidence 5679999999999999775332111 111121 23455544433 46666666677777775
Q ss_pred HHHHHHHHHH
Q 003891 678 ALANLRMSLR 687 (788)
Q Consensus 678 ~~~~~r~~~~ 687 (788)
.++++.+..+
T Consensus 347 ~~~~~~~~~~ 356 (381)
T COG0763 347 RREALKEKFR 356 (381)
T ss_pred hHHHHHHHHH
Confidence 5555555443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.54 E-value=3.6 Score=46.20 Aligned_cols=217 Identities=14% Similarity=0.100 Sum_probs=110.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcH
Q 003891 61 YYNLGVVYSELMQYDTALGCYEKAALE--------------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 126 (788)
Q Consensus 61 ~~~lg~~~~~~g~~~~A~~~~~kal~~--------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 126 (788)
|..++......=+++-|.+.|.++-.+ ....+ --..+|.++...|++.+|.+.|.+.=..+...
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P-~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAl- 665 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP-NDLLLADVFAYQGKFHEAAKLFKRSGHENRAL- 665 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHhhhhHHHHHHHHHHcCchhhHH-
Confidence 455555555555666666666554211 11111 12456777777888888888876532111100
Q ss_pred HHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHH----------HHH
Q 003891 127 IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY--NWHYADAMYNLGVAYGEMLKFDMAIVFYE----------LAF 194 (788)
Q Consensus 127 ~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~----------~al 194 (788)
+.+.. .-.+..+.-+...|.-++-....++-.+- +-+.+ ...+.++...|+.++|+...- -+-
T Consensus 666 EmyTD--lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP---kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~r 740 (1081)
T KOG1538|consen 666 EMYTD--LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP---KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIAR 740 (1081)
T ss_pred HHHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc---HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHh
Confidence 00000 01122333333444544444444432221 11111 123556666777777765432 222
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003891 195 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 274 (788)
Q Consensus 195 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~ 274 (788)
+++....+.+..++..+.....+.-|.+.|++.-. ...+..++...+++++|....++--+.- ++.|+-
T Consensus 741 kld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~p 809 (1081)
T KOG1538|consen 741 KLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEFK---DDVYMP 809 (1081)
T ss_pred hcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCcccc---ccccch
Confidence 33444455555666666666666666666665422 1233445566777777776665543322 345666
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 003891 275 LGVLYRDAGSISLAIDAYEQC 295 (788)
Q Consensus 275 la~~~~~~g~~~eA~~~~~~a 295 (788)
.|+.+.+..+++||.+.|.+|
T Consensus 810 yaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 810 YAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred HHHHhhhhhhHHHHHHHHHHh
Confidence 677777777777777766655
|
|
| >PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length | Back alignment and domain information |
|---|
Probab=93.49 E-value=4.5 Score=43.28 Aligned_cols=61 Identities=26% Similarity=0.408 Sum_probs=40.7
Q ss_pred HHHHhcccccEeecCCCCCCchhHHHHhhhCCceeec-CCCccCccchhHHHhhhCCcccccCCHHHHHH
Q 003891 599 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTM-AGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQ 667 (788)
Q Consensus 599 ~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~-~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~ 667 (788)
+.+.++.-||+++ .+|||.+.||-.+|+|+|.. +|.... + --.|...|+ =+-..|+++-++
T Consensus 241 d~~~Ll~~a~l~I----g~ggTMa~EAA~LGtPaIs~~~g~~~~--v-d~~L~~~Gl-l~~~~~~~ei~~ 302 (335)
T PF04007_consen 241 DGLDLLYYADLVI----GGGGTMAREAALLGTPAISCFPGKLLA--V-DKYLIEKGL-LYHSTDPDEIVE 302 (335)
T ss_pred CHHHHHHhcCEEE----eCCcHHHHHHHHhCCCEEEecCCcchh--H-HHHHHHCCC-eEecCCHHHHHH
Confidence 4445666699998 88999999999999999974 333110 1 134556676 233567776665
|
They are found in archaea and some bacteria and have no known function. |
| >COG4671 Predicted glycosyl transferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.38 E-value=2 Score=45.01 Aligned_cols=126 Identities=15% Similarity=0.271 Sum_probs=82.5
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcE--EEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 003891 523 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSR--LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 600 (788)
Q Consensus 523 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~--l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~ 600 (788)
++++.+.++++-.. ...+++......-...|+.. -+|+.+|+.....++.+...+.. ...|.+... ..++
T Consensus 217 pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~MP~~~r~~l~~~A~~----~p~i~I~~f---~~~~ 288 (400)
T COG4671 217 PEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHKWLIVTGPFMPEAQRQKLLASAPK----RPHISIFEF---RNDF 288 (400)
T ss_pred CccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcceEEEeCCCCCHHHHHHHHHhccc----CCCeEEEEh---hhhH
Confidence 67777777776543 23456666665555556655 45556778777777777665432 256776666 4577
Q ss_pred HHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccC--ccchhHHHhhhCCccccc
Q 003891 601 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHA--HNVGVSLLTKVGLKHLIA 659 (788)
Q Consensus 601 ~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~--~r~~~~~l~~~gl~~~ia 659 (788)
..++..||+.+. -+|-+|+||-|..|+|-+..+-..-+ .-+-|--|..+||-+.+-
T Consensus 289 ~~ll~gA~~vVS---m~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~ 346 (400)
T COG4671 289 ESLLAGARLVVS---MGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLL 346 (400)
T ss_pred HHHHHhhheeee---cccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeC
Confidence 777788999882 27788999999999998876632211 223345567788877664
|
|
| >PRK10017 colanic acid biosynthesis protein; Provisional | Back alignment and domain information |
|---|
Probab=93.31 E-value=2.8 Score=46.56 Aligned_cols=84 Identities=8% Similarity=0.211 Sum_probs=61.3
Q ss_pred CCcEEEc-CCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC---
Q 003891 585 SLRVDLL-PLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK--- 660 (788)
Q Consensus 585 ~~rv~~~-~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~--- 660 (788)
+++++++ +... ..+....++.||+++-+ =-.+++=|+.+|||+|.+.= +.=..+++..+|+++++.+
T Consensus 306 ~~~~~vi~~~~~-~~e~~~iIs~~dl~ig~----RlHa~I~a~~~gvP~i~i~Y----~~K~~~~~~~lg~~~~~~~~~~ 376 (426)
T PRK10017 306 PARYHVVMDELN-DLEMGKILGACELTVGT----RLHSAIISMNFGTPAIAINY----EHKSAGIMQQLGLPEMAIDIRH 376 (426)
T ss_pred ccceeEecCCCC-hHHHHHHHhhCCEEEEe----cchHHHHHHHcCCCEEEeee----hHHHHHHHHHcCCccEEechhh
Confidence 4555443 3323 46888889999999832 23478999999999998662 3445678899999998543
Q ss_pred -CHHHHHHHHHHHhcCHH
Q 003891 661 -NEDEYVQLALQLASDVT 677 (788)
Q Consensus 661 -~~~~y~~~a~~l~~d~~ 677 (788)
+.++.++...++..|.+
T Consensus 377 l~~~~Li~~v~~~~~~r~ 394 (426)
T PRK10017 377 LLDGSLQAMVADTLGQLP 394 (426)
T ss_pred CCHHHHHHHHHHHHhCHH
Confidence 56789998888888874
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.7 Score=41.44 Aligned_cols=73 Identities=21% Similarity=0.190 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhH
Q 003891 234 FSQSLNNLGVVYTVQG---KMDAAAEMIEKAIA-ANPTY-AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 234 ~~~~~~~la~~~~~~g---~~~eA~~~l~kal~-~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
..+..+++++++.... +..+.+.+++..++ -.|.. -+..+.|+..+.+.|+|++++.+.+..++..|+|.++.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 3556777888777654 45567788888886 34433 46677888888889999999999999999888887764
|
|
| >PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=93.29 E-value=1.5 Score=49.27 Aligned_cols=177 Identities=15% Similarity=0.108 Sum_probs=95.1
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCCCC-HH----HHHHHHHHHH----HcCCCC-Cc
Q 003891 524 NGFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCC-DS----VRHRFLSTLE----QLGLES-LR 587 (788)
Q Consensus 524 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~l~~~~~~~-~~----~~~~l~~~~~----~~gi~~-~r 587 (788)
++..++.++-++ .|..+.-++++.+.|...|. .+|+-++.+... .+ .++.+.+... ++|-.. .-
T Consensus 274 ~~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~P 353 (474)
T PF00982_consen 274 GKRKIIVGVDRLDYTKGIPEKLRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTP 353 (474)
T ss_dssp T-SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-S
T ss_pred CCcEEEEEeccchhhcCHHHHHHHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCcee
Confidence 334567777877 89999999999999999987 455555544321 12 3333333322 244331 13
Q ss_pred EEEcCCcCCcHHHHHhcccccEeecCCCCCC-chhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcc--c-c-cCCH
Q 003891 588 VDLLPLILLNHDHMQAYSLMDISLDTFPYAG-TTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKH--L-I-AKNE 662 (788)
Q Consensus 588 v~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g-~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~--~-i-a~~~ 662 (788)
|++.....+.++.+++|+.+||+|.|+---| ..++.|-.++-.+ -+|...-|+.+++ -. .|.+ + | ..|.
T Consensus 354 I~~~~~~~~~~~~~aly~~aDv~lvTslrDGmNLva~Eyva~q~~---~~GvLiLSefaGa-a~--~L~~~al~VNP~d~ 427 (474)
T PF00982_consen 354 IIYIYRSLSFEELLALYRAADVALVTSLRDGMNLVAKEYVACQDD---NPGVLILSEFAGA-AE--QLSEAALLVNPWDI 427 (474)
T ss_dssp EEEE-S---HHHHHHHHHH-SEEEE--SSBS--HHHHHHHHHS-T---S--EEEEETTBGG-GG--T-TTS-EEE-TT-H
T ss_pred EEEEecCCCHHHHHHHHHhhhhEEecchhhccCCcceEEEEEecC---CCCceEeeccCCH-HH--HcCCccEEECCCCh
Confidence 6666554448999999999999999998866 5589999998766 2222223444322 11 2221 1 1 3466
Q ss_pred HHHHHHHHHHh-cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 003891 663 DEYVQLALQLA-SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 709 (788)
Q Consensus 663 ~~y~~~a~~l~-~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 709 (788)
++.++...+-. ..+++++...+.+++.+.+. |...|++.+-+.+
T Consensus 428 ~~~A~ai~~AL~M~~~Er~~r~~~~~~~v~~~---~~~~W~~~~l~~L 472 (474)
T PF00982_consen 428 EEVADAIHEALTMPPEERKERHARLREYVREH---DVQWWAESFLRDL 472 (474)
T ss_dssp HHHHHHHHHHHT--HHHHHHHHHHHHHHHHHT----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhC---CHHHHHHHHHHHh
Confidence 66666544433 35667777677777777654 7778877765543
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.15 Score=32.49 Aligned_cols=26 Identities=54% Similarity=0.719 Sum_probs=10.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003891 62 YNLGVVYSELMQYDTALGCYEKAALE 87 (788)
Q Consensus 62 ~~lg~~~~~~g~~~~A~~~~~kal~~ 87 (788)
+.+|.++...+++++|+..++++++.
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 33444444444444444444444333
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PRK10117 trehalose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.13 E-value=3.2 Score=46.35 Aligned_cols=179 Identities=17% Similarity=0.148 Sum_probs=111.7
Q ss_pred CeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCCCCH-----HHHHHHHHHHH----HcCCCC-CcEE
Q 003891 526 FITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCCD-----SVRHRFLSTLE----QLGLES-LRVD 589 (788)
Q Consensus 526 ~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~l~~~~~~~~-----~~~~~l~~~~~----~~gi~~-~rv~ 589 (788)
..++.++-|+ .|..++=+.+|.+.|...|. .+|+-++.+.... .++.++.+... ++|-.. .=|.
T Consensus 255 ~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~ 334 (474)
T PRK10117 255 VQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLY 334 (474)
T ss_pred CeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEE
Confidence 3456677877 89999999999999999986 5566666554221 23333333332 234321 1255
Q ss_pred EcCCcCCcHHHHHhcccccEeecCCCCCC-chhHHHHhhhCCceeecCCCccCccchh--HHHhhhCCcccc--cCCHHH
Q 003891 590 LLPLILLNHDHMQAYSLMDISLDTFPYAG-TTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLI--AKNEDE 664 (788)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g-~~t~~eal~~GvPvvt~~g~~~~~r~~~--~~l~~~gl~~~i--a~~~~~ 664 (788)
++...-+.++.++.|+.+||+|.|+---| -.++-|-.++--| .-+|-..-|+.++ ..|. | -++ ..|.++
T Consensus 335 y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~~--~~~GvLILSefAGaA~~L~--~--AllVNP~d~~~ 408 (474)
T PRK10117 335 YLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDP--ANPGVLVLSQFAGAANELT--S--ALIVNPYDRDE 408 (474)
T ss_pred EecCCCCHHHHHHHHHhccEEEecccccccccccchheeeecC--CCCccEEEecccchHHHhC--C--CeEECCCCHHH
Confidence 55554447899999999999999998766 4488898888543 0111112244431 2221 1 111 357777
Q ss_pred HHHHHHH-HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 003891 665 YVQLALQ-LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 713 (788)
Q Consensus 665 y~~~a~~-l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 713 (788)
.++...+ |...++++++.-+.+++.+.+ +|...|++.+-+.+..+.
T Consensus 409 ~A~Ai~~AL~Mp~~Er~~R~~~l~~~v~~---~dv~~W~~~fL~~L~~~~ 455 (474)
T PRK10117 409 VAAALDRALTMPLAERISRHAEMLDVIVK---NDINHWQECFISDLKQIV 455 (474)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhh---CCHHHHHHHHHHHHHHhh
Confidence 7765443 445666777767777777655 488888888887776654
|
|
| >PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional | Back alignment and domain information |
|---|
Probab=93.09 E-value=1.6 Score=47.38 Aligned_cols=111 Identities=14% Similarity=0.022 Sum_probs=63.9
Q ss_pred CCeEEEecCC--CCcCCH-HHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCC-CCc-EEEcCCcCCcHH
Q 003891 525 GFITFGSFNN--LAKITP-KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLE-SLR-VDLLPLILLNHD 599 (788)
Q Consensus 525 ~~~~f~~~~~--~~K~~~-~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~-~~r-v~~~~~~~~~~~ 599 (788)
..|+|.-..+ ..|.=| +-+...++-+.. .+.+++|.|++ ..++...+..+..+-. ..+ +.+.|..+ -.+
T Consensus 181 ~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~-~~~~vvl~Gg~----~e~~~~~~i~~~~~~~~~~~~~~l~g~~s-L~e 254 (348)
T PRK10916 181 PIIGFCPGAEFGPAKRWPHYHYAELAQQLID-EGYQVVLFGSA----KDHEAGNEILAALNTEQQAWCRNLAGETQ-LEQ 254 (348)
T ss_pred CEEEEeCCCCCccccCCCHHHHHHHHHHHHH-CCCeEEEEeCH----HhHHHHHHHHHhcccccccceeeccCCCC-HHH
Confidence 3565655443 345444 444444443432 46677777765 3333333333332211 123 45666655 688
Q ss_pred HHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccch
Q 003891 600 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 645 (788)
Q Consensus 600 ~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 645 (788)
..+.++.||+++-. -+| .+==|-++|+|+|++-|.+...+.+
T Consensus 255 l~ali~~a~l~I~n--DTG--p~HlAaA~g~P~valfGpt~p~~~~ 296 (348)
T PRK10916 255 AVILIAACKAIVTN--DSG--LMHVAAALNRPLVALYGPSSPDFTP 296 (348)
T ss_pred HHHHHHhCCEEEec--CCh--HHHHHHHhCCCEEEEECCCCccccC
Confidence 99999999999722 122 2334778999999999987665554
|
|
| >PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long) | Back alignment and domain information |
|---|
Probab=93.06 E-value=3.6 Score=43.39 Aligned_cols=123 Identities=12% Similarity=0.097 Sum_probs=80.7
Q ss_pred CeEEEecCCCCcCCHHHHHHHHHHHhHc-CCcEEEE-ecCCCCCHHHHHHHHHHHHHcCCCCCcEEEc-CCcCCcHHHHH
Q 003891 526 FITFGSFNNLAKITPKVLQVWARILCAV-PNSRLVV-KCKPFCCDSVRHRFLSTLEQLGLESLRVDLL-PLILLNHDHMQ 602 (788)
Q Consensus 526 ~~~f~~~~~~~K~~~~~~~~~~~il~~~-p~~~l~l-~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~-~~~~~~~~~~~ 602 (788)
.|..|+-+...-.|-+.++ +|.+.. .+.++++ +|-|...+..++++++...++--+ +++..+ ..++ .+||+.
T Consensus 187 tILvGNSgd~sNnHieaL~---~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~-~~~~iL~e~mp-f~eYl~ 261 (360)
T PF07429_consen 187 TILVGNSGDPSNNHIEALE---ALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGA-ENFQILTEFMP-FDEYLA 261 (360)
T ss_pred EEEEcCCCCCCccHHHHHH---HHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCc-cceeEhhhhCC-HHHHHH
Confidence 4555555555555555555 444433 3455544 233323456788888888776444 566544 4555 799999
Q ss_pred hcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccc
Q 003891 603 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI 658 (788)
Q Consensus 603 ~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i 658 (788)
.++.||++.-.+.= -|--|+|=.|++|+||+.-...+ -...|...|++=+.
T Consensus 262 lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~~np-----~~~~l~~~~ipVlf 313 (360)
T PF07429_consen 262 LLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSRDNP-----FWQDLKEQGIPVLF 313 (360)
T ss_pred HHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEecCCh-----HHHHHHhCCCeEEe
Confidence 99999999988765 45558899999999999744322 33567788887654
|
This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.99 E-value=1.2 Score=42.90 Aligned_cols=98 Identities=17% Similarity=0.054 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCH----HHH
Q 003891 202 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP--TYA----EAY 272 (788)
Q Consensus 202 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p--~~~----~~~ 272 (788)
.++..+|..|.+.|+.++|++.|.++.+..... .+.+.++..+....+++.....++.++-..-. .+. ...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 345555666666666666666666655443222 23455555556666666666666666554421 122 123
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 003891 273 NNLGVLYRDAGSISLAIDAYEQCLKID 299 (788)
Q Consensus 273 ~~la~~~~~~g~~~eA~~~~~~al~l~ 299 (788)
..-|..+...++|.+|.+.|-.+..-.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 345666677888888888877665433
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.80 E-value=1 Score=54.86 Aligned_cols=136 Identities=18% Similarity=0.201 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHH------HHHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQ------KYYE-ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------R 88 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~------~~~~-al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~--------~ 88 (788)
+.-....|......|.+.+|.+ .+.. .-.+.|.....+..++.++...+++++|+..-.++.-+ .
T Consensus 932 a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen 932 AKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred hhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence 3445667777777888887777 5542 23347888999999999999999999999998887543 3
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhC
Q 003891 89 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS-----PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 163 (788)
Q Consensus 89 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~ 163 (788)
|+....+.+++...+..++...|+..+.++..+. |.++. .+.+..+++.++...++++.|+++.+.|...+
T Consensus 1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~----~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPP----TALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCc----hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999887752 22221 12223333444444568999999999988743
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.74 E-value=7.7 Score=43.78 Aligned_cols=210 Identities=10% Similarity=0.048 Sum_probs=118.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHh-------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhC
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKI-------------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAA------LER 88 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~-------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal------~~~ 88 (788)
..++......=+++-|.+.|.++-.+ ......--..++.++...|++.+|.+.|.+.- ++.
T Consensus 589 ~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmy 668 (1081)
T KOG1538|consen 589 RELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRSGHENRALEMY 668 (1081)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHH
Confidence 34455555555666676666654221 11111223456788888899999998887642 211
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHH----------
Q 003891 89 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAV--SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY---------- 156 (788)
Q Consensus 89 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~---------- 156 (788)
.+ .-.+.+++-+...|.-++-....++--+- +-+.+.+ .++.....|+.++|+...
T Consensus 669 TD--lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePka----------AAEmLiSaGe~~KAi~i~~d~gW~d~li 736 (1081)
T KOG1538|consen 669 TD--LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKA----------AAEMLISAGEHVKAIEICGDHGWVDMLI 736 (1081)
T ss_pred HH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHH----------HHHHhhcccchhhhhhhhhcccHHHHHH
Confidence 11 12344455555555555444444332221 1111111 122333456777766542
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-H
Q 003891 157 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-S 235 (788)
Q Consensus 157 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-~ 235 (788)
+-+-+++....+.+..++..+.....+.-|.+.|++.-. ...+..++.+.++|.+|....++- |+. +
T Consensus 737 dI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~h----Pe~~~ 804 (1081)
T KOG1538|consen 737 DIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKH----PEFKD 804 (1081)
T ss_pred HHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhC----ccccc
Confidence 222233444555666677777777777777777766422 223455667788999988776653 333 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 236 QSLNNLGVVYTVQGKMDAAAEMIEKA 261 (788)
Q Consensus 236 ~~~~~la~~~~~~g~~~eA~~~l~ka 261 (788)
..++..|..+.+..++++|.+.|.+|
T Consensus 805 dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 805 DVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred cccchHHHHhhhhhhHHHHHHHHHHh
Confidence 47788888889999999988777665
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.70 E-value=3.3 Score=44.42 Aligned_cols=170 Identities=14% Similarity=0.137 Sum_probs=123.1
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHHHHH-----HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HH
Q 003891 3 VASYHKALSADPSYKPAAECLAIVLTDLGT-----SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ--YD 75 (788)
Q Consensus 3 i~~~~kaL~~~P~~~~a~~~la~~l~~lg~-----~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~ 75 (788)
++.=.+.+..+|+....|...-.++...-. -..++.-.++-+.+...+++.+|+...+|+....++.+.+. +.
T Consensus 49 l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~ 128 (421)
T KOG0529|consen 49 LELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWN 128 (421)
T ss_pred HHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHH
Confidence 455567788888887777655555444333 33444567788888999999999999999999999998764 68
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcC----
Q 003891 76 TALGCYEKAALERPMYAEAYCNMGVIYKNRG----DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG---- 147 (788)
Q Consensus 76 ~A~~~~~kal~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g---- 147 (788)
.=+++.+++++.+|.+..+|...=.+..... ...+-+++..+++..++.+-.+|.....++..+-.- ...|
T Consensus 129 ~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~-~~~g~~~~ 207 (421)
T KOG0529|consen 129 TELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPK-EADGNFMP 207 (421)
T ss_pred HHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccc-cccCccCC
Confidence 8899999999999998888766655544432 356778889999999999888888877766543210 1112
Q ss_pred --CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 003891 148 --DINQGVAYYKKALYYNWHYADAMYNL 173 (788)
Q Consensus 148 --~~~~A~~~~~~al~~~p~~~~~~~~l 173 (788)
...+-++.-..++-.+|++..+|...
T Consensus 208 ~~~l~sEle~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 208 KELLQSELEMVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred HHHHHHHHHHHHHHHhcCccccceeeeh
Confidence 23455666677777889888877653
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.65 E-value=11 Score=42.69 Aligned_cols=98 Identities=18% Similarity=0.137 Sum_probs=75.0
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH
Q 003891 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 206 (788)
Q Consensus 133 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 206 (788)
-.++.+.+....+..+|..+++.|+..+...|.+ ......++.+|..+.+.+.|.+++++|-+.+|.++-....
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~ 433 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL 433 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 3445555666667778888888888888776654 2356678888888888888888888888888888887777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 207 LGVIYKDRDNLDKAVECYQMALSI 230 (788)
Q Consensus 207 la~~~~~~g~~~eA~~~~~~al~~ 230 (788)
+-.+....++-++|+.+..+....
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhh
Confidence 777778888888888888776654
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.44 E-value=6.8 Score=43.74 Aligned_cols=156 Identities=10% Similarity=0.055 Sum_probs=98.5
Q ss_pred cCChHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------
Q 003891 37 AGNTQDGIQKYYEALKI------------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE----------------- 87 (788)
Q Consensus 37 ~g~~~~A~~~~~~al~~------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~----------------- 87 (788)
...|++|...|.-+... .|-+.+.+..++.+...+|+.+.|....++++-.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 45677888888877665 4567889999999999999999888888887631
Q ss_pred ----CCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHH
Q 003891 88 ----RPMYAE---AYCNMGVIYKNRGDLESAIACYERCLAVSPN-FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 159 (788)
Q Consensus 88 ----~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~a 159 (788)
.|.+-. +++..-..+.+.|=+..|.++++-.+.++|. ++-....+...|...+ .+|+=-++.++..
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALra------reYqwiI~~~~~~ 404 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRA------REYQWIIELSNEP 404 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHH------HhHHHHHHHHHHH
Confidence 222222 3344455667789999999999999999998 7755444444444433 3444444444333
Q ss_pred H-----HhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCC
Q 003891 160 L-----YYNWHYADAMYNLGVAYGEMLK---FDMAIVFYELAFHFNPH 199 (788)
Q Consensus 160 l-----~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~ 199 (788)
- ..-|+.. .-..++..|..... -+.|...+.+|++..|.
T Consensus 405 e~~n~l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 405 ENMNKLSQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HhhccHhhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 1 2223322 12234444444443 45566666666666653
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.24 E-value=29 Score=40.79 Aligned_cols=260 Identities=12% Similarity=0.015 Sum_probs=154.9
Q ss_pred HHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHH
Q 003891 4 ASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS---ELMQYDTALGC 80 (788)
Q Consensus 4 ~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~---~~g~~~~A~~~ 80 (788)
.-+++-+.+++.+... +..|-..+...|++++-...-.++.++.|..+..|.....-.. ..++-.++...
T Consensus 100 ~t~~ee~ai~~y~~~~-------~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 100 RTLEEELAINSYKYAQ-------MVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred HHHHHHhcccccchHH-------HHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 3444555555554444 4445556677889888888888888888888888876654433 23667788888
Q ss_pred HHHHHHhCCCCHHHHHHHHHH-------HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHH
Q 003891 81 YEKAALERPMYAEAYCNMGVI-------YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 153 (788)
Q Consensus 81 ~~kal~~~p~~~~~~~~la~~-------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~ 153 (788)
|++++... +....|...+.. +...++++.-...|.+++..-.....--..+...+......|...-..++-+
T Consensus 173 ~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~ 251 (881)
T KOG0128|consen 173 FEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVI 251 (881)
T ss_pred HHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99987643 334444444433 3455678888889999987644332222233444555555555555557777
Q ss_pred HHHHHHHHhCCCCHHH----HHHHH---HHHHHcCChHHHHHHHHH-------HHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 003891 154 AYYKKALYYNWHYADA----MYNLG---VAYGEMLKFDMAIVFYEL-------AFHFNPHCAEACNNLGVIYKDRDNLDK 219 (788)
Q Consensus 154 ~~~~~al~~~p~~~~~----~~~la---~~~~~~g~~~~A~~~~~~-------al~~~p~~~~~~~~la~~~~~~g~~~e 219 (788)
.++...+... -+.++ +.... .......+++.|.+-+.+ .++..+.....|..+-......|....
T Consensus 252 a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~r 330 (881)
T KOG0128|consen 252 ALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVR 330 (881)
T ss_pred HHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchH
Confidence 7777777654 22211 11111 111233445555444333 333344445566777777778888888
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHH
Q 003891 220 AVECYQMALSIKPNFSQSLNNLGVVYTV-QGKMDAAAEMIEKAIAANPTYAEAY 272 (788)
Q Consensus 220 A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~eA~~~l~kal~~~p~~~~~~ 272 (788)
-...++++....+.+...|...+...-. ++-.+.+...+-+++...|-....|
T Consensus 331 i~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~ 384 (881)
T KOG0128|consen 331 IQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLW 384 (881)
T ss_pred HHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHH
Confidence 8888999988888888888777765432 3333344455555555555444333
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.84 Score=49.25 Aligned_cols=124 Identities=12% Similarity=-0.012 Sum_probs=104.3
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 145 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 224 (788)
Q Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 224 (788)
..|+...|-.-...++...|..+......+.+...+|+|+.+...+..+-..-.....+...+-.....+|++++|....
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 36888888888999999999999999999999999999999999887766654444555666667778899999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 003891 225 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 268 (788)
Q Consensus 225 ~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 268 (788)
+-.+...-+++++..--+.....+|-+++|..++++.+.++|..
T Consensus 381 ~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 381 EMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 99888877888877777777778899999999999999998754
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.24 E-value=1.9 Score=39.68 Aligned_cols=71 Identities=17% Similarity=0.055 Sum_probs=32.5
Q ss_pred cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 003891 180 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 250 (788)
Q Consensus 180 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 250 (788)
.++.+++...+...--+.|+..+.-..-|.++...|+|.+|+..++...+..+..+...-.++.|+..+|+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 44444444444444444444444444444444444444444444444444444444444444444444433
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=92.23 E-value=2.6 Score=37.94 Aligned_cols=73 Identities=12% Similarity=0.149 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHh-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 003891 201 AEACNNLGVIYKDRD---NLDKAVECYQMALS-IKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 273 (788)
Q Consensus 201 ~~~~~~la~~~~~~g---~~~eA~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~ 273 (788)
....+++++++.... +..+.+.+++..++ -.|. .-+..+.|+..+++.++|++++.+.+..++..|++.++..
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 455666666666554 34556777777775 3332 2446677777777778888888888777777777766543
|
|
| >PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed | Back alignment and domain information |
|---|
Probab=92.22 E-value=1.5 Score=50.08 Aligned_cols=139 Identities=15% Similarity=0.157 Sum_probs=78.7
Q ss_pred CcCCHHHHHHHH-HHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCC
Q 003891 536 AKITPKVLQVWA-RILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF 614 (788)
Q Consensus 536 ~K~~~~~~~~~~-~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~ 614 (788)
.++-|.++++.. +.++ ++.++++-.. .+..++.+++.++..++- .+.+... . +-...++.||++|
T Consensus 428 ~rllPv~l~aa~~~~l~--~~l~fvvp~a---~~~~~~~i~~~~~~~~~~--~~~ii~~---~-~~~~~m~aaD~aL--- 493 (608)
T PRK01021 428 LRNLTIQVQAFLASSLA--STHQLLVSSA---NPKYDHLILEVLQQEGCL--HSHIVPS---Q-FRYELMRECDCAL--- 493 (608)
T ss_pred HHHHHHHHHHHHHHHhc--cCeEEEEecC---chhhHHHHHHHHhhcCCC--CeEEecC---c-chHHHHHhcCeee---
Confidence 455677777654 1222 2455555322 223345556655443321 1223221 1 1135566699999
Q ss_pred CCCCchhHHHHhhhCCceeecCCCccCcc-chhHHHh----hhC----------Ccccc----cCCHHHHHHHHHHHhcC
Q 003891 615 PYAGTTTTCESLYMGVPCVTMAGSVHAHN-VGVSLLT----KVG----------LKHLI----AKNEDEYVQLALQLASD 675 (788)
Q Consensus 615 ~~~g~~t~~eal~~GvPvvt~~g~~~~~r-~~~~~l~----~~g----------l~~~i----a~~~~~y~~~a~~l~~d 675 (788)
-..||.|+|++.+|+|.|+.---..-+. ++--+++ .+| .||++ .-+++...+. +++..|
T Consensus 494 -aaSGTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~-l~lL~d 571 (608)
T PRK01021 494 -AKCGTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAA-LDILKT 571 (608)
T ss_pred -ecCCHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHH-HHHhcC
Confidence 6679999999999999776442211111 1111122 123 36777 3456776665 699999
Q ss_pred HHHHHHHHHHHHHHh
Q 003891 676 VTALANLRMSLRDLM 690 (788)
Q Consensus 676 ~~~~~~~r~~~~~~~ 690 (788)
++.++++++.+++..
T Consensus 572 ~~~r~~~~~~l~~lr 586 (608)
T PRK01021 572 SQSKEKQKDACRDLY 586 (608)
T ss_pred HHHHHHHHHHHHHHH
Confidence 998888888886543
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.22 Score=48.71 Aligned_cols=58 Identities=24% Similarity=0.402 Sum_probs=35.0
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcH
Q 003891 69 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 126 (788)
Q Consensus 69 ~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 126 (788)
.+.++.+.|.+.|.+++++.|+....|+.+|....+.|+++.|.+.|++.++++|.+.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3455556666666666666666666666666666666666666666666666665543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.14 E-value=2.2 Score=39.18 Aligned_cols=81 Identities=10% Similarity=-0.001 Sum_probs=64.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 107 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~ 107 (788)
......-...++.+++...+...--+.|+.++.-..-|.++...|++.+|+..++...+..+..+.+--.++.|+..+|+
T Consensus 14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 14 IEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 33334444578888888888888888888888888888888888888888888888887777777777788888888877
Q ss_pred H
Q 003891 108 L 108 (788)
Q Consensus 108 ~ 108 (788)
.
T Consensus 94 p 94 (153)
T TIGR02561 94 A 94 (153)
T ss_pred h
Confidence 4
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=92.12 E-value=5.3 Score=42.86 Aligned_cols=297 Identities=16% Similarity=0.147 Sum_probs=169.3
Q ss_pred cccChhHHhhhhhhcccCCCc-eEEEEEeccccCC-hhhHHHHHHHhhh-CCeEEEcc--CCC--------HHHHHHHHH
Q 003891 364 YFTHSVSYFIEAPLVYHDYQN-YKVVVYSAVVKAD-AKTIRFREKVMKK-GGIWRDIY--GID--------EKKVAAMVR 430 (788)
Q Consensus 364 f~~H~v~~~~~~~l~~~dr~~-fev~~Y~~~~~~D-~~t~~~r~~~~~~-~~~~~~~~--~~~--------~~~~a~~i~ 430 (788)
|...|-..-+.++....+... |+.++..++...| ++...+-.-..-. .|..-++. +-+ -..+-+.+.
T Consensus 10 ~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~i~~~~~vl~ 89 (383)
T COG0381 10 FGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGNIIEGLSKVLE 89 (383)
T ss_pred EecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHHHHHHHHHHHH
Confidence 456677777778887777665 9999998888776 4444444322111 23333332 211 134666778
Q ss_pred hCCCcEEEeCCCCCCCCcc-cccc-cCCCCeEEecccCCCCCCCCCccEE------------EecCCCCCcCc------c
Q 003891 431 EDKIDILVELTGHTANNKL-GMMA-CQPAPVQVTWIGYPNTTGLPTIDYR------------ITDSLADPPET------K 490 (788)
Q Consensus 431 ~d~idilvdl~g~t~~~~~-~~~a-~r~Apvq~~~~g~~~ttg~~~~Dy~------------i~d~~~~p~~~------~ 490 (788)
+.++|+++=. |.|...-. .+.| ++==|| ||.- -|+.+.|-+ +|+-.+.|-+. +
T Consensus 90 ~~kPD~VlVh-GDT~t~lA~alaa~~~~IpV-----~HvE-AGlRt~~~~~PEE~NR~l~~~~S~~hfapte~ar~nLl~ 162 (383)
T COG0381 90 EEKPDLVLVH-GDTNTTLAGALAAFYLKIPV-----GHVE-AGLRTGDLYFPEEINRRLTSHLSDLHFAPTEIARKNLLR 162 (383)
T ss_pred hhCCCEEEEe-CCcchHHHHHHHHHHhCCce-----EEEe-cccccCCCCCcHHHHHHHHHHhhhhhcCChHHHHHHHHH
Confidence 8899977632 22221111 1111 111122 3321 266655544 33334444332 1
Q ss_pred CCCccceEEcCCCccc----cC--CCCCCCCCCC-CCCCCCCCeEEEecCCCC---cCCHHHHHHHHHHHhHcCCcEEEE
Q 003891 491 QKHVEELIRLPECFLC----YT--PSPEAGPVCP-TPALTNGFITFGSFNNLA---KITPKVLQVWARILCAVPNSRLVV 560 (788)
Q Consensus 491 ~~~~e~l~~lp~~~~~----~~--~~~~~~~~~~-~~~~~~~~~~f~~~~~~~---K~~~~~~~~~~~il~~~p~~~l~l 560 (788)
.-+.|+-|.+-|.... +. .......... .....+..+...++.|.. +.-...++...+|+...|+..++.
T Consensus 163 EG~~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~~~~~~~~~iLvT~HRreN~~~~~~~i~~al~~i~~~~~~~~viy 242 (383)
T COG0381 163 EGVPEKRIFVTGNTVIDALLNTRDRVLEDSKILAKGLDDKDKKYILVTAHRRENVGEPLEEICEALREIAEEYPDVIVIY 242 (383)
T ss_pred cCCCccceEEeCChHHHHHHHHHhhhccchhhHHhhhccccCcEEEEEcchhhcccccHHHHHHHHHHHHHhCCCceEEE
Confidence 2233433333322110 00 0000000000 022334446677777553 445677888889999998888777
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCC-c
Q 003891 561 KCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGS-V 639 (788)
Q Consensus 561 ~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~-~ 639 (788)
-..+. +.+++.. ...+|=. +||.+.+++. ..++..+...|=++| ...|.-.=||-..|+||+++... .
T Consensus 243 p~H~~--~~v~e~~---~~~L~~~-~~v~li~pl~-~~~f~~L~~~a~~il----tDSGgiqEEAp~lg~Pvl~lR~~TE 311 (383)
T COG0381 243 PVHPR--PRVRELV---LKRLKNV-ERVKLIDPLG-YLDFHNLMKNAFLIL----TDSGGIQEEAPSLGKPVLVLRDTTE 311 (383)
T ss_pred eCCCC--hhhhHHH---HHHhCCC-CcEEEeCCcc-hHHHHHHHHhceEEE----ecCCchhhhHHhcCCcEEeeccCCC
Confidence 44332 2233222 2444544 7899999887 788888888887776 45566678999999999998754 3
Q ss_pred cCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHHHHHHH
Q 003891 640 HAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRM 684 (788)
Q Consensus 640 ~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~ 684 (788)
-..++.+ |-.-+|..+.+.-++.+..+.+|++..++|+.
T Consensus 312 RPE~v~a------gt~~lvg~~~~~i~~~~~~ll~~~~~~~~m~~ 350 (383)
T COG0381 312 RPEGVEA------GTNILVGTDEENILDAATELLEDEEFYERMSN 350 (383)
T ss_pred Cccceec------CceEEeCccHHHHHHHHHHHhhChHHHHHHhc
Confidence 4456655 55557777889999999999999988777765
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.99 E-value=8.6 Score=42.99 Aligned_cols=155 Identities=16% Similarity=0.134 Sum_probs=98.2
Q ss_pred cCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----------------
Q 003891 146 EGDINQGVAYYKKALYY------------NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF----------------- 196 (788)
Q Consensus 146 ~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------------- 196 (788)
...|++|...|.-+... .|-+.+.+..++.+...+|+.+.|....++++-.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 45678888888877765 3445678889999999999998888888777632
Q ss_pred ----CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHH-----H
Q 003891 197 ----NPHCAE---ACNNLGVIYKDRDNLDKAVECYQMALSIKPN-FSQSLNNLGVVYT-VQGKMDAAAEMIEKA-----I 262 (788)
Q Consensus 197 ----~p~~~~---~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~la~~~~-~~g~~~eA~~~l~ka-----l 262 (788)
.|.+-. +++..-..+.+.|-+..|.++.+-.++++|. ++-+...+...|. +..+|+=-++.++.. +
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 122222 2233344556678888888888888888887 6665555555443 445555555555444 2
Q ss_pred HhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC
Q 003891 263 AANPTYAEAYNNLGVLYRDAGS---ISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 263 ~~~p~~~~~~~~la~~~~~~g~---~~eA~~~~~~al~l~p~ 301 (788)
..-|+.+ .-..+|..|..... .+.|...+.+|++..|.
T Consensus 411 ~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 411 SQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 2234322 23345555555544 56677778888877773
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 788 | ||||
| 2vsn_A | 568 | Structure And Topological Arrangement Of An O-Glcna | 2e-28 | ||
| 2vsy_A | 568 | Xanthomonas Campestris Putative Ogt (Xcc0866), Apos | 3e-28 | ||
| 3pe3_A | 723 | Structure Of Human O-Glcnac Transferase And Its Com | 3e-28 | ||
| 3pe3_A | 723 | Structure Of Human O-Glcnac Transferase And Its Com | 3e-23 | ||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 3e-27 | ||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 5e-24 | ||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 2e-14 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 5e-19 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 1e-18 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 1e-11 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 4e-16 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 1e-13 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 5e-12 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 8e-15 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 7e-11 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 6e-13 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 5e-10 | ||
| 1na3_A | 91 | Design Of Stable Alpha-Helical Arrays From An Ideal | 2e-11 | ||
| 3vtx_A | 184 | Crystal Structure Of Mama Protein Length = 184 | 1e-09 | ||
| 3vtx_A | 184 | Crystal Structure Of Mama Protein Length = 184 | 4e-04 | ||
| 2avp_A | 70 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 1e-08 | ||
| 4eqf_A | 365 | Trip8b-1a#206-567 Interacting With The Carboxy-Term | 6e-08 | ||
| 2c0l_A | 305 | Tpr Domain Of Human Pex5p In Complex With Human Msc | 2e-06 | ||
| 2c0m_A | 319 | Apo Form Of The Tpr Domain Of The Pex5p Receptor Le | 3e-06 | ||
| 2j9q_A | 328 | A Novel Conformation For The Tpr Domain Of Pex5p Le | 3e-06 | ||
| 3r9a_B | 328 | Human Alanine-Glyoxylate Aminotransferase In Comple | 4e-06 | ||
| 1fch_A | 368 | Crystal Structure Of The Pts1 Complexed To The Tpr | 5e-06 | ||
| 3q3e_A | 631 | Crystal Structure Of The Actinobacillus Pleuropneum | 9e-06 | ||
| 2vyi_A | 131 | Crystal Structure Of The Tpr Domain Of Human Sgt Le | 7e-05 | ||
| 3cv0_A | 327 | Structure Of Peroxisomal Targeting Signal 1 (Pts1) | 9e-05 | ||
| 3cvq_A | 327 | Structure Of Peroxisomal Targeting Signal 1 (pts1) | 1e-04 | ||
| 2q7f_A | 243 | Crystal Structure Of Yrrb: A Tpr Protein With An Un | 5e-04 |
| >pdb|2VSN|A Chain A, Structure And Topological Arrangement Of An O-Glcnac Transferase Homolog: Insight Into Molecular Control Of Intracellular Glycosylation Length = 568 | Back alignment and structure |
|
| >pdb|2VSY|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866), Apostructure Length = 568 | Back alignment and structure |
|
| >pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723 | Back alignment and structure |
|
| >pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723 | Back alignment and structure |
|
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91 | Back alignment and structure |
|
| >pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184 | Back alignment and structure |
|
| >pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184 | Back alignment and structure |
|
| >pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70 | Back alignment and structure |
|
| >pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal Seven Residues Of Hcn2 Length = 365 | Back alignment and structure |
|
| >pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2 Length = 305 | Back alignment and structure |
|
| >pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor Length = 319 | Back alignment and structure |
|
| >pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p Length = 328 | Back alignment and structure |
|
| >pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With The Tpr Domain Of Human Pex5p Length = 328 | Back alignment and structure |
|
| >pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region Of Human Pex5 Length = 368 | Back alignment and structure |
|
| >pdb|3Q3E|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae Hmw1c Glycosyltransferase Length = 631 | Back alignment and structure |
|
| >pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131 | Back alignment and structure |
|
| >pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide Length = 327 | Back alignment and structure |
|
| >pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed To Pts1 Peptide (7- Skl) Length = 327 | Back alignment and structure |
|
| >pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual Peptide- Binding Site Length = 243 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 555 bits (1432), Expect = 0.0
Identities = 125/571 (21%), Positives = 207/571 (36%), Gaps = 43/571 (7%)
Query: 183 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 242
++ A P A L + Q L++ P +++ LG
Sbjct: 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG 64
Query: 243 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302
V Q + AA ++++A A P + LG DAG A AY + ++ P+
Sbjct: 65 RVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124
Query: 303 RNAGQNRLLAMNYINEGH-------------------------------DDKLFEAHRDW 331
L + + + R
Sbjct: 125 PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACARTR 184
Query: 332 GKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYS 391
+ S + PL +G+VS + H A + + ++
Sbjct: 185 AQAIAA--SVRPLAPTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHL 242
Query: 392 -AVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLG 450
A D T+R R + + D+ + A +R ID+L +L G +
Sbjct: 243 FATSGDDGSTLRTR---LAQASTLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPE 299
Query: 451 MMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPS 510
+ A +PAPVQV W+ YP T+G P +DY + D+ A PP + + E ++RL F S
Sbjct: 300 VFALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQGAFQPSDTS 359
Query: 511 PEAG--PVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCD 568
P L + FNN K+ P+ + +L VP+S L + P
Sbjct: 360 RVVAEPPSRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGP---G 416
Query: 569 SVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYM 628
R + G+++ R+ +P L + ++ Y D+ LDT PY TT ++L+
Sbjct: 417 EADARLRAFAHAQGVDAQRLVFMP-KLPHPQYLARYRHADLFLDTHPYNAHTTASDALWT 475
Query: 629 GVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRD 688
G P +T G A V SL +GL + ++ +V A+ LASD AL L +
Sbjct: 476 GCPVLTTPGETFAARVAGSLNHHLGLDEMNVADDAAFVAKAVALASDPAALTALHARVDV 535
Query: 689 LMSKSPVCDGQNFALGLESTYRNMWHRYCKG 719
L S V FA + + + R+
Sbjct: 536 LRRASGVFHMDGFADDFGALLQALARRHGWL 566
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 2e-28
Identities = 23/201 (11%), Positives = 50/201 (24%), Gaps = 7/201 (3%)
Query: 36 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAY 95
+ + + + A++ P A+ L + ++ P + EA
Sbjct: 1 MTADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV 60
Query: 96 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 155
+G + + A ++ +P + AL D G A
Sbjct: 61 ARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDA-------GQAEAAAAA 113
Query: 156 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 215
Y +A L + + V A + +D
Sbjct: 114 YTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDAS 173
Query: 216 NLDKAVECYQMALSIKPNFSQ 236
++ A +I +
Sbjct: 174 AAEQLACARTRAQAIAASVRP 194
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 1e-27
Identities = 25/144 (17%), Positives = 45/144 (31%), Gaps = 7/144 (4%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+ A+ P + L + G+T G L + P + A
Sbjct: 9 LLQLRAAVRHRPQD-------FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 122
LG V ++ A ++A+ P + +G ++ G E+A A Y R +
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL 121
Query: 123 PNFEIAKNNMAIALTDLGTKVKLE 146
P + L L+
Sbjct: 122 PEEPYITAQLLNWRRRLCDWRALD 145
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 81.0 bits (200), Expect = 5e-16
Identities = 15/116 (12%), Positives = 29/116 (25%), Gaps = 7/116 (6%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+ + L+ P + A L V + +A P +
Sbjct: 43 EMAVQRGLALHPGHPEAVARLGRVRWTQQ-------RHAEAAVLLQQASDAAPEHPGIAL 95
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 118
LG + Q + A Y +A P + + D + +
Sbjct: 96 WLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQV 151
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 414 bits (1064), Expect = e-134
Identities = 144/743 (19%), Positives = 250/743 (33%), Gaps = 59/743 (7%)
Query: 10 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 69
+ P++ A L +L + GN ++ ++ Y +AL++ P +A A+ NL V
Sbjct: 2 PGSCPTH-------ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 54
Query: 70 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 129
+ + AL Y++A P +A+AY NMG K D++ A+ CY R + ++P F A
Sbjct: 55 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAH 114
Query: 130 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 189
+N+A D G +I + +A Y+ AL + DA NL + +
Sbjct: 115 SNLASIHKDSG-------NIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDER 167
Query: 190 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 249
+ E N L ++ L ++ A++ + +
Sbjct: 168 MKKLVSIVADQLEK-NRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYE 226
Query: 250 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 309
+ + + L + + C + PD + +
Sbjct: 227 HPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVK 286
Query: 310 LLAM-----NYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTK------------DPE 352
++A + + K + G + + YT +
Sbjct: 287 VMAEANHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLG 346
Query: 353 RPLVIGYVSPDYF--------THSVSYFIEAPLVYHD-YQNYKVVVYSAVVKADAKTIRF 403
P G + DY + E + + +
Sbjct: 347 YPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFF-----IGDHANMFPHLKKKA 401
Query: 404 REKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTW 463
G I+ + ++ + A + +V++ + + +
Sbjct: 402 VIDFKSNGHIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDGGDNADS-----SNTALNM 456
Query: 464 IGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPE----CFLCYTPSPEAGPVCPT 519
P T + I L P
Sbjct: 457 PVIPMNTIAEAVIEMINRGQIQITINGFSISNGLATTQINNKAATGEEVPRTIIVTTRSQ 516
Query: 520 PALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLE 579
L I + +FN L KI P LQ+WA IL VPNS L + P +
Sbjct: 517 YGLPEDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVG---EPNIQQYAQ 573
Query: 580 QLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSV 639
+GL R+ P + +H++ L D+ LDT G TT + L+ G P VTM G
Sbjct: 574 NMGLPQNRIIFSP-VAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGET 632
Query: 640 HAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQ 699
A V S LT +G LIAKN EY +A++L +D+ L +R + SP+ + +
Sbjct: 633 LASRVAASQLTCLGCLELIAKNRQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTK 692
Query: 700 NFALGLESTYRNMWHRYCKGDVP 722
+ + LE Y MW Y G+ P
Sbjct: 693 QYTMELERLYLQMWEHYAAGNKP 715
|
| >3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A Length = 631 | Back alignment and structure |
|---|
Score = 383 bits (984), Expect = e-123
Identities = 82/547 (14%), Positives = 179/547 (32%), Gaps = 37/547 (6%)
Query: 181 LKFDMAIVFYELAFHFNPHCAEACN-NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 239
+ +A++F F H + N +LD + + S
Sbjct: 105 YQRWLALIFASSPFVNADHILQTYNREPNRKNSLEIHLDSSKSSLIKFCILYLPESNVNL 164
Query: 240 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 299
NL V++ + A+ + A+N + + +Q ++
Sbjct: 165 NLDVMWNIS-PELCASLCFALQSPRFIGTSTAFNKRATILQWF------PRHLDQLKNLN 217
Query: 300 PDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN-----TKDPERP 354
+ + +Y + + A +R + S+Y D +P
Sbjct: 218 NIPSAISHDVYMHCSYDTSVNKHDVKRALNHVIRRH--IESEYGWKDRDVAHIGYRNNKP 275
Query: 355 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIW 414
+++ + + HS+ + + +++ ++ + D ++ +
Sbjct: 276 VMVVLLEHFHSAHSIYRTH-STSMIAAREHFYLIGLGSP-SVDQAGQEVFDE-------F 326
Query: 415 RDIYGIDEKKVAAMVR----EDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTT 470
+ G + K+ +R + I + + + AP+Q +G+P TT
Sbjct: 327 HLVAGDNMKQKLEFIRSVCESNGAAIFYMPSIGMDMTTIFASNTRLAPIQAIALGHPATT 386
Query: 471 GLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPT-PALTNGFITF 529
I+Y I + D +++ E L+RLP+ L Y PS A +
Sbjct: 387 HSDFIEYVIVE--DDYVGSEECFSETLLRLPKDALPYVPSALAPEKVDYLLRENPEVVNI 444
Query: 530 GSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVD 589
G + K+ P L+ I + + H ++ + L
Sbjct: 445 GIASTTMKLNPYFLEALKAIRDRAKVKVHF-HFALGQSNGITHPYVERFIKSYLGD-SAT 502
Query: 590 LLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL 649
P H +++ D+ ++ FP+ T + + +G+ V G+ ++ L
Sbjct: 503 AHPH-SPYHQYLRILHNCDMMVNPFPFGNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLF 561
Query: 650 TKVGLK-HLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDG--QNFALGLE 706
++GL LIA DEYV+ A++LA + LR + + + + G +
Sbjct: 562 KRLGLPEWLIANTVDEYVERAVRLAENHQERLELRRYIIENNGLNTLFTGDPRPMGQVFL 621
Query: 707 STYRNMW 713
Sbjct: 622 EKLNAFL 628
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 332 bits (853), Expect = e-107
Identities = 85/307 (27%), Positives = 144/307 (46%), Gaps = 14/307 (4%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+ Y AL P + LA L G + + +Q Y AL+ +P
Sbjct: 87 IEHYRHALRLKPDFIDGYINLAAALVAAG-------DMEGAVQAYVSALQYNPDLYCVRS 139
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 122
+LG + L + + A CY KA +P +A A+ N+G ++ +G++ AI +E+ + +
Sbjct: 140 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199
Query: 123 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 182
PNF A N+ L + ++ VA Y +AL + ++A NL Y E
Sbjct: 200 PNFLDAYINLGNVLKEAR-------IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL 252
Query: 183 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 242
D+AI Y A PH +A NL K++ ++ +A +CY AL + P + SLNNL
Sbjct: 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312
Query: 243 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302
+ QG ++ A + KA+ P +A A++NL + + G + A+ Y++ ++I P
Sbjct: 313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372
Query: 303 RNAGQNR 309
+A N
Sbjct: 373 ADAYSNM 379
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 282 bits (725), Expect = 3e-88
Identities = 80/307 (26%), Positives = 138/307 (44%), Gaps = 14/307 (4%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
A+ +P A ++LG K G Q+ I+ Y AL++ P + Y
Sbjct: 53 AHFSTLAIKQNPLL-------AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYI 105
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 122
NL + A+ Y A P ++G + K G LE A ACY + +
Sbjct: 106 NLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165
Query: 123 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 182
PNF +A +N+ G+I + +++KA+ + ++ DA NLG E
Sbjct: 166 PNFAVAWSNLGCVFNAQ-------GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI 218
Query: 183 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 242
FD A+ Y A +P+ A NL +Y ++ +D A++ Y+ A+ ++P+F + NL
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278
Query: 243 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302
+G + A + A+ PT+A++ NNL + R+ G+I A+ Y + L++ P+
Sbjct: 279 NALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338
Query: 303 RNAGQNR 309
A N
Sbjct: 339 AAAHSNL 345
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 275 bits (707), Expect = 1e-85
Identities = 84/307 (27%), Positives = 132/307 (42%), Gaps = 14/307 (4%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+ +P VL L + A+K +P A AY
Sbjct: 19 ERHCMQLWRQEPDN-------TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS 71
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 122
NLG VY E Q A+ Y A +P + + Y N+ GD+E A+ Y L +
Sbjct: 72 NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131
Query: 123 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 182
P+ ++++ L L G + + A Y KA+ ++A A NLG + +
Sbjct: 132 PDLYCVRSDLGNLLKAL-------GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184
Query: 183 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 242
+AI +E A +P+ +A NLG + K+ D+AV Y ALS+ PN + NL
Sbjct: 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244
Query: 243 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302
VY QG +D A + +AI P + +AY NL ++ GS++ A D Y L++ P
Sbjct: 245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304
Query: 303 RNAGQNR 309
++ N
Sbjct: 305 ADSLNNL 311
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 273 bits (700), Expect = 1e-84
Identities = 75/281 (26%), Positives = 126/281 (44%), Gaps = 7/281 (2%)
Query: 29 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 88
+L AG+ + + + + +P L ++ + + D + A +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 89 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 148
P+ AEAY N+G +YK RG L+ AI Y L + P+F N+A AL GD
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAA-------GD 116
Query: 149 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 208
+ V Y AL YN +LG + + + A Y A P+ A A +NLG
Sbjct: 117 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG 176
Query: 209 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 268
++ + + A+ ++ A+++ PNF + NLG V D A +A++ +P +
Sbjct: 177 CVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236
Query: 269 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 309
A + NL +Y + G I LAID Y + +++ P +A N
Sbjct: 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL 277
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 265 bits (679), Expect = 2e-81
Identities = 85/281 (30%), Positives = 141/281 (50%), Gaps = 14/281 (4%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
V +Y AL +P V +DLG LK G ++ Y +A++ P++A A+
Sbjct: 121 VQAYVSALQYNPDL-------YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWS 173
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 122
NLG V++ + A+ +EKA P + +AY N+G + K + A+A Y R L++S
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233
Query: 123 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 182
PN + N+A + G I+ + Y++A+ H+ DA NL A E
Sbjct: 234 PNHAVVHGNLACVYYEQG-------LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS 286
Query: 183 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 242
A Y A P A++ NNL I +++ N+++AV Y+ AL + P F+ + +NL
Sbjct: 287 VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346
Query: 243 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 283
V QGK+ A ++AI +PT+A+AY+N+G ++
Sbjct: 347 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 182 bits (465), Expect = 4e-51
Identities = 59/214 (27%), Positives = 97/214 (45%), Gaps = 14/214 (6%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+ + KA++ DP++ +LG LK A + Y AL + P++A +
Sbjct: 189 IHHFEKAVTLDPNF-------LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 122
NL VY E D A+ Y +A +P + +AYCN+ K +G + A CY L +
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301
Query: 123 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 182
P + NN+A + G +I + V Y+KAL +A A NL + K
Sbjct: 302 PTHADSLNNLANIKREQG-------NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354
Query: 183 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 216
A++ Y+ A +P A+A +N+G K+ +
Sbjct: 355 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 250 bits (641), Expect = 2e-76
Identities = 63/312 (20%), Positives = 103/312 (33%), Gaps = 20/312 (6%)
Query: 4 ASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN 63
Y+ P A + G G+ I A+ DP A A+
Sbjct: 52 KGYYFHTENPFKDWPGA-------FEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQF 104
Query: 64 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 123
LG+ +E A+ ++ +P +A + V Y N + A + + +P
Sbjct: 105 LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNP 164
Query: 124 NFEIAKNNMAIALTDLGTKVKLEGDINQG---VAYYKKALYYNWHYADAM--YNLGVAYG 178
++ N + K D + Y +A + N D LGV +
Sbjct: 165 KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224
Query: 179 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 238
+F+ AI + A P N LG + D ++AVE Y AL I+P F +S
Sbjct: 225 LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSR 284
Query: 239 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA--------YNNLGVLYRDAGSISLAID 290
NLG+ G A A++ N+ R A S+ +
Sbjct: 285 YNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE 344
Query: 291 AYEQCLKIDPDS 302
++ D D
Sbjct: 345 LFQAANLGDLDV 356
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 248 bits (635), Expect = 2e-75
Identities = 58/324 (17%), Positives = 110/324 (33%), Gaps = 20/324 (6%)
Query: 3 VASYHKALSADPSYKPA-AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 61
A+ + E + + YY + P
Sbjct: 9 KAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGA 68
Query: 62 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 121
+ G+ + + E A L+ P AEA+ +G+ + ++AI +RCL +
Sbjct: 69 FEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL 128
Query: 122 SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 181
PN A +A++ T+ K + N Y + N + G
Sbjct: 129 QPNNLKALMALAVSYTNTS-------HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTR 181
Query: 182 KFDMAIVFYEL----------AFHFNPHCAEAC--NNLGVIYKDRDNLDKAVECYQMALS 229
+ + V + A H N + LGV++ ++A++ + AL+
Sbjct: 182 RMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT 241
Query: 230 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 289
++P N LG + + A E +A+ P + + NLG+ + G+ A+
Sbjct: 242 VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301
Query: 290 DAYEQCLKIDPDSRNAGQNRLLAM 313
+ L + SRN Q A+
Sbjct: 302 SNFLTALSLQRKSRNQQQVPHPAI 325
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 170 bits (432), Expect = 7e-47
Identities = 41/251 (16%), Positives = 77/251 (30%), Gaps = 27/251 (10%)
Query: 71 LMQYDTALGCYEKAALERPMYAEAYCNMGVI--------YKNRGDLESAIACYERCLAVS 122
M+++ A E + M +N+ + ++ Y
Sbjct: 2 AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61
Query: 123 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 182
+ GD+ + + + A+ + A+A LG+ E
Sbjct: 62 FKDWPGAFEEGLKRLKE-------GDLPVTILFMEAAILQDPGDAEAWQFLGITQAENEN 114
Query: 183 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 242
AIV + P+ +A L V Y + + A E + + P + + N
Sbjct: 115 EQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK 174
Query: 243 VVYTVQGKMDAAAEMIEKAIAANPTYAEA------------YNNLGVLYRDAGSISLAID 290
+ +M + Y EA LGVL+ +G + AID
Sbjct: 175 GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAID 234
Query: 291 AYEQCLKIDPD 301
A+ L + P+
Sbjct: 235 AFNAALTVRPE 245
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 157 bits (398), Expect = 2e-42
Identities = 39/218 (17%), Positives = 67/218 (30%), Gaps = 4/218 (1%)
Query: 106 GDLESAIACYERCLAVSPNFEIAKNNMA-IALTDLGTKVKLEGDINQGVAYYKKALYYNW 164
+ E A A E + MA + + + ++ Y +
Sbjct: 3 MEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPF 62
Query: 165 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 224
+ G+ + + I+F E A +P AEA LG+ + +N A+
Sbjct: 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVAL 122
Query: 225 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 284
Q L ++PN ++L L V YT A E ++ I NP Y N
Sbjct: 123 QRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRR 182
Query: 285 ISLAIDAYEQCLKIDPDSRNAGQNR---LLAMNYINEG 319
+S + + A + G
Sbjct: 183 MSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 1e-38
Identities = 37/237 (15%), Positives = 74/237 (31%), Gaps = 31/237 (13%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLG---TSLKLAGNTQDGIQKYYEALKIDPHY-- 57
+ + +P YK + S + + + Y EA +
Sbjct: 153 CEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID 212
Query: 58 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 117
LGV++ +++ A+ + A RP + +G N E A+ Y R
Sbjct: 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTR 272
Query: 118 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY 177
L + P F ++ N+ I+ +LG + V+ + AL + A
Sbjct: 273 ALEIQPGFIRSRYNLGISCINLG-------AYREAVSNFLTALSLQRKSRNQQQVPHPAI 325
Query: 178 GEML--KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 232
+ +A+ + P +A N ++ A ++ P
Sbjct: 326 SGNIWAALRIALSLMD-----QPELFQAANL------------GDLDVLLRAFNLDP 365
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 247 bits (632), Expect = 1e-75
Identities = 47/292 (16%), Positives = 88/292 (30%), Gaps = 22/292 (7%)
Query: 38 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 97
G+ Y Y G+ +L A +E P EA+ +
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60
Query: 98 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 157
+G+ AI + P +A++ T+ + N +A +
Sbjct: 61 LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH-------NANAALASLR 113
Query: 158 KALYYNWHYADA---------------MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 202
L Y + + + ++ A NP+ A+
Sbjct: 114 AWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQ 173
Query: 203 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 262
+LGV+Y +N D A + A+ ++P+ +Q N LG + A + +A+
Sbjct: 174 LHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRAL 233
Query: 263 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 314
NP Y N+ V Y + LA + + +
Sbjct: 234 DINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREAT 285
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 190 bits (486), Expect = 9e-55
Identities = 36/289 (12%), Positives = 73/289 (25%), Gaps = 41/289 (14%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
++ A P LG + I A +DP +
Sbjct: 41 ALAFEAVCQAAPER-------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHA 93
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYC---------------NMGVIYKNRGD 107
L V ++ + AL L +P Y + + + +
Sbjct: 94 ALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE 153
Query: 108 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 167
L ++PN ++ + + + A ++A+ A
Sbjct: 154 YRECRTLLHAALEMNPNDAQLHASLGVLYNLSN-------NYDSAAANLRRAVELRPDDA 206
Query: 168 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 227
LG + A+ Y A NP N+ V Y + D A + A
Sbjct: 207 QLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRA 266
Query: 228 LSIKPNFSQSLNN------------LGVVYTVQGKMDAAAEMIEKAIAA 264
+ ++ + ++ V + D + +
Sbjct: 267 IYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 167 bits (426), Expect = 2e-46
Identities = 41/260 (15%), Positives = 78/260 (30%), Gaps = 42/260 (16%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+ + + A DP LA+ T+ N + L P Y
Sbjct: 75 IIALNHARMLDPKDIAVHAALAVSHTNEH-------NANAALASLRAWLLSQPQYEQLGS 127
Query: 63 ---------------NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 107
+ ++ +Y A P A+ + ++GV+Y +
Sbjct: 128 VNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNN 187
Query: 108 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 167
+SA A R + + P+ N + L + + + + + Y +AL N Y
Sbjct: 188 YDSAAANLRRAVELRPDDAQLWNKLGATLANGN---RPQ----EALDAYNRALDINPGYV 240
Query: 168 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN------------LGVIYKDRD 215
MYN+ V+Y M ++D+A A + ++ +
Sbjct: 241 RVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN 300
Query: 216 NLDKAVECYQMALSI-KPNF 234
D Y + F
Sbjct: 301 RPDLVELTYAQNVEPFAKEF 320
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 1e-28
Identities = 22/152 (14%), Positives = 44/152 (28%)
Query: 182 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 241
Y + E G+ NL +A ++ P ++ +L
Sbjct: 2 HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61
Query: 242 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301
G+ K A + A +P + L V + + + + A+ + L P
Sbjct: 62 GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 121
Query: 302 SRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 333
G L A I++ + +
Sbjct: 122 YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE 153
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 247 bits (632), Expect = 5e-75
Identities = 64/330 (19%), Positives = 115/330 (34%), Gaps = 33/330 (10%)
Query: 6 YHKALSADPSYKPAAECLAIVLTDLGTSLK-----LAGNTQDGIQKYYEALKIDPH---- 56
+ +A SA S + L L ++ L+ Y + + +
Sbjct: 3 FERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLR 62
Query: 57 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 116
P + G+ + A+ +E A + P + EA+ +G AI+
Sbjct: 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR 122
Query: 117 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA------- 169
RCL + P+ + A +A++ T+ Q + L Y YA
Sbjct: 123 RCLELKPDNQTALMALAVSFTNES-------LQRQACEILRDWLRYTPAYAHLVTPAEEG 175
Query: 170 --MYNLGVAYGEM------LKFDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDNLDK 219
LG + + F + A +P + LGV++ DK
Sbjct: 176 AGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDK 235
Query: 220 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 279
AV+C+ ALS++PN N LG + + A +A+ P Y + NLG+
Sbjct: 236 AVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 295
Query: 280 RDAGSISLAIDAYEQCLKIDPDSRNAGQNR 309
+ G+ A++ + + L + SR
Sbjct: 296 INLGAHREAVEHFLEALNMQRKSRGPRGEG 325
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 231 bits (592), Expect = 3e-69
Identities = 54/322 (16%), Positives = 101/322 (31%), Gaps = 24/322 (7%)
Query: 1 MLVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 60
+ A+Y K + + G G+ + + + A++ DP + A
Sbjct: 44 LTSATYDKGYQFEEENPLRD---HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEA 100
Query: 61 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 120
+ LG +E Q A+ + +P A + V + N A L
Sbjct: 101 WQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR 160
Query: 121 VSPNFEIAKNNM--AIALTDLGTKVKLEGDINQG------VAYYKKALYYNWHYADAM-- 170
+P + LG ++ G + + A+ + D
Sbjct: 161 YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 220
Query: 171 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 230
LGV + ++D A+ + A P+ N LG + + ++AV Y+ AL +
Sbjct: 221 CGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL 280
Query: 231 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA-------- 282
+P + +S NLG+ G A E +A+ G + +
Sbjct: 281 QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLAL 340
Query: 283 ---GSISLAIDAYEQCLKIDPD 301
G A + L
Sbjct: 341 SMLGQSDAYGAADARDLSTLLT 362
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 2e-32
Identities = 26/194 (13%), Positives = 51/194 (26%), Gaps = 16/194 (8%)
Query: 156 YKKALYYNWHYADAMYNLGVAYGEMLKF------------DMAIVFYELAFHFNPHC--- 200
+++A D L EM K D+ Y+ + F
Sbjct: 3 FERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLR 62
Query: 201 -AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 259
G+ +L AV ++ A+ P ++ LG + A +
Sbjct: 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR 122
Query: 260 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 319
+ + P A L V + + A + L+ P + G
Sbjct: 123 RCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLG 182
Query: 320 HDDKLFEAHRDWGK 333
++ +
Sbjct: 183 PSKRILGSLLSDSL 196
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 253 bits (649), Expect = 5e-75
Identities = 51/316 (16%), Positives = 110/316 (34%), Gaps = 21/316 (6%)
Query: 5 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 64
Y +++ + +L +L + D + + L+IDP+ Y
Sbjct: 293 DYLSSINGLEKS-------SDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLH 345
Query: 65 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124
E + + P A + +G+ Y + A + + + P
Sbjct: 346 LASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ 405
Query: 125 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 184
F A A + G + +Q ++ Y A LG+ + ++
Sbjct: 406 FGPAWIGFAHSFAIEG-------EHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNIL 458
Query: 185 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-------KPNFSQS 237
+A + + ++ + N LGV+ ++ ++ A+ +Q AL + + ++ +
Sbjct: 459 LANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518
Query: 238 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 297
NLG Y DAA + + + + + A + + ++Y LAI + L
Sbjct: 519 WANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578
Query: 298 IDPDSRNAGQNRLLAM 313
I P+ A A+
Sbjct: 579 ISPNEIMASDLLKRAL 594
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 230 bits (587), Expect = 4e-66
Identities = 53/315 (16%), Positives = 93/315 (29%), Gaps = 17/315 (5%)
Query: 1 MLVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD---GIQKYYEALKIDPHY 57
+L A L +Y ++ A L L + +D + Y ++
Sbjct: 245 LLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKS 304
Query: 58 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 117
+ ++ L K P + Y G+
Sbjct: 305 SDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISND 364
Query: 118 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY 177
+ P + + I + I++ Y+ K+ + + A ++
Sbjct: 365 LVDRHPEKAVTWLAVGIYYLCVN-------KISEARRYFSKSSTMDPQFGPAWIGFAHSF 417
Query: 178 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 237
+ D AI Y A LG+ + N+ A E Q + ++
Sbjct: 418 AIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL 477
Query: 238 LNNLGVVYTVQGKMDAAAEMIEKAIAA-------NPTYAEAYNNLGVLYRDAGSISLAID 290
LN LGVV + M A + A+ +A + NLG YR AID
Sbjct: 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537
Query: 291 AYEQCLKIDPDSRNA 305
A Q L + + N
Sbjct: 538 ALNQGLLLSTNDANV 552
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 222 bits (567), Expect = 2e-63
Identities = 45/285 (15%), Positives = 88/285 (30%), Gaps = 21/285 (7%)
Query: 4 ASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN 63
A K L DP L + G + + P A +
Sbjct: 326 AITTKILEIDPYNLDVYPLHLASLHESG-------EKNKLYLISNDLVDRHPEKAVTWLA 378
Query: 64 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 123
+G+ Y + + A + K++ P + A+ + G+ + AI+ Y +
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ 438
Query: 124 NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 183
+ + + LG +I Y + + + + LGV
Sbjct: 439 GTHLPYLFLGMQHMQLG-------NILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDM 491
Query: 184 DMAIVFYELA-------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 236
AI ++ A A NLG Y+ D A++ L + N +
Sbjct: 492 QTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551
Query: 237 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 281
+ +VY + A + +++A +P A + L +
Sbjct: 552 VHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 212 bits (540), Expect = 1e-59
Identities = 52/320 (16%), Positives = 98/320 (30%), Gaps = 17/320 (5%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK--YYEALKIDPHYAPA 60
Y +AL D A + L L A D + K Y K D + +
Sbjct: 220 KECYKEALMVDAKCYEAFDQLV------SNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273
Query: 61 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 120
Y L + + Y + ++ R +A + L
Sbjct: 274 LYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE 333
Query: 121 VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 180
+ P +L + G K KL + + A +G+ Y +
Sbjct: 334 IDPYNLDVYPLHLASLHESGEKNKL-------YLISNDLVDRHPEKAVTWLAVGIYYLCV 386
Query: 181 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN 240
K A ++ + +P A + D+A+ Y A +
Sbjct: 387 NKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLF 446
Query: 241 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 300
LG+ + G + A E ++ + A N LGV+ + + AI+ ++ L +
Sbjct: 447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506
Query: 301 DSRNAGQNRLLAMNYINEGH 320
+++ + + N GH
Sbjct: 507 KTQSNEKPWAAT--WANLGH 524
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 1e-49
Identities = 41/279 (14%), Positives = 83/279 (29%), Gaps = 5/279 (1%)
Query: 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 86
L LG + + ++ + + I A Y G VY+ L +D A CY++A +
Sbjct: 170 LNLLGETNPFRKDEKNANKLLMQDGGIKLE-ASMCYLRGQVYTNLSNFDRAKECYKEALM 228
Query: 87 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 146
EA+ + + D E + S +L L
Sbjct: 229 VDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE----DAAFLRSLYMLKLNKTSH 284
Query: 147 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 206
D + Y ++ +D + +F + +P+ +
Sbjct: 285 EDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPL 344
Query: 207 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 266
+ +K + P + + +G+ Y K+ A K+ +P
Sbjct: 345 HLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP 404
Query: 267 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 305
+ A+ + G AI AY ++ +
Sbjct: 405 QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLP 443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 4e-45
Identities = 39/243 (16%), Positives = 77/243 (31%), Gaps = 41/243 (16%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+ K+ + DP + PA S + G I Y A ++ Y
Sbjct: 393 RRYFSKSSTMDPQFGPA-------WIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYL 445
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 122
LG+ + +L A + + +GV+ N+ D+++AI ++ L +
Sbjct: 446 FLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV 505
Query: 123 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 182
+ + +A NLG AY ++
Sbjct: 506 KKTQSNEKP----------------------------------WAATWANLGHAYRKLKM 531
Query: 183 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 242
+D AI + + A + ++Y + A+ +L+I PN + + L
Sbjct: 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLK 591
Query: 243 VVY 245
Sbjct: 592 RAL 594
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 126 bits (317), Expect = 3e-30
Identities = 37/319 (11%), Positives = 84/319 (26%), Gaps = 30/319 (9%)
Query: 7 HKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGV 66
L + + L + + + L I + A++ L
Sbjct: 67 GSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFW-LAQ 125
Query: 67 VYSELMQYDTALGCYEKAALERP----------------MYAEAYCNMGVIYKNRGDLES 110
VY Y A K L + A +G R D ++
Sbjct: 126 VYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKN 185
Query: 111 AIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAM 170
A + + + T+L + ++ YK+AL + +A
Sbjct: 186 ANKLLMQDGGIKLEASMC-YLRGQVYTNL-------SNFDRAKECYKEALMVDAKCYEAF 237
Query: 171 YNLGVAY----GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 226
L + E + + + + + + L + ++ + E Y
Sbjct: 238 DQLVSNHLLTADEEWDLVLKLNYSTYS-KEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296
Query: 227 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 286
+++ S L V+ + + K + +P + Y ++G +
Sbjct: 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKN 356
Query: 287 LAIDAYEQCLKIDPDSRNA 305
+ P+
Sbjct: 357 KLYLISNDLVDRHPEKAVT 375
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 3e-24
Identities = 39/292 (13%), Positives = 70/292 (23%), Gaps = 66/292 (22%)
Query: 73 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 132
QY A EK +A+ + +Y GD A + + +
Sbjct: 99 QYKCAAFVGEKVLDITGNPNDAF-WLAQVYCCTGDYARAKCLLTKEDLYNRSSACR---- 153
Query: 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 192
L + + A+ LG A
Sbjct: 154 ---------------------YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQ 192
Query: 193 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----- 247
A C G +Y + N D+A ECY+ AL + ++ + L + +
Sbjct: 193 DGGIKLE-ASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEE 251
Query: 248 --------------------------------QGKMDAAAEMIEKAIAANPTYAEAYNNL 275
AE +I ++
Sbjct: 252 WDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCK 311
Query: 276 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 327
+ + L+IDP + + L + G +KL+
Sbjct: 312 ADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLAS--LHESGEKNKLYLI 361
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 234 bits (600), Expect = 6e-71
Identities = 50/298 (16%), Positives = 92/298 (30%), Gaps = 17/298 (5%)
Query: 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 85
V+ L + + + ++ DP +A EL + + K
Sbjct: 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLV 83
Query: 86 LERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 144
P ++ +G Y G E A + + + A +
Sbjct: 84 DLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVES---- 139
Query: 145 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 204
+ +Q +A Y A M +G+ YG +A F+ A P
Sbjct: 140 ---EHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVM 196
Query: 205 NNLGVIYKDRDNLDKAVECYQMALSI---------KPNFSQSLNNLGVVYTVQGKMDAAA 255
+ +GV+ A + + AL + LNNLG V K A
Sbjct: 197 HEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256
Query: 256 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 313
+ +A+ P A Y+ +G ++ G+ A+D + L + D + +
Sbjct: 257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 222 bits (568), Expect = 2e-66
Identities = 39/301 (12%), Positives = 95/301 (31%), Gaps = 24/301 (7%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+ DP + L +L + ++ + + P +++
Sbjct: 42 YKLTSVVMEKDPFHASCLPVHIGTLVELN-------KANELFYLSHKLVDLYPSNPVSWF 94
Query: 63 NLGVVYSEL-MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 121
+G Y + + + A KA Y A+ G + + + A+A Y +
Sbjct: 95 AVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL 154
Query: 122 SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 181
+ + + + ++ +AL M+ +GV +
Sbjct: 155 MKGCHLPMLYIGLEYGLTN-------NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNG 207
Query: 182 KFDMAIVFYELAFHFNPHC---------AEACNNLGVIYKDRDNLDKAVECYQMALSIKP 232
++ A ++ A NNLG + + +A++ ++ AL + P
Sbjct: 208 EWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP 267
Query: 233 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 292
+ + + +G ++++ G + A + A+ + LG S A
Sbjct: 268 QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGA 327
Query: 293 E 293
+
Sbjct: 328 D 328
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 205 bits (524), Expect = 4e-60
Identities = 45/264 (17%), Positives = 96/264 (36%), Gaps = 24/264 (9%)
Query: 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE-ALKIDPHYAPA 60
L HK + PS + +G + G+ + ++Y A ++ Y PA
Sbjct: 75 LFYLSHKLVDLYPSN-------PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPA 127
Query: 61 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 120
+ G ++ ++D A+ Y AA +G+ Y + + A + + L+
Sbjct: 128 WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS 187
Query: 121 VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL---------YYNWHYADAMY 171
++P + + + G+ ++ AL + +
Sbjct: 188 IAPEDPFVMHEVGVVAFQN-------GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN 240
Query: 172 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 231
NLG ++ K+ A+ ++ A P A + +G I+ N + AV+ + AL ++
Sbjct: 241 NLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300
Query: 232 PNFSQSLNNLGVVYTVQGKMDAAA 255
+ + S+ LG + A
Sbjct: 301 RDDTFSVTMLGHCIEMYIGDSEAY 324
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 205 bits (524), Expect = 5e-60
Identities = 43/270 (15%), Positives = 80/270 (29%), Gaps = 15/270 (5%)
Query: 45 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 104
E++ +L + + + P +A
Sbjct: 9 TVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVE 68
Query: 105 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW 164
+ + + P+ ++ + +G K Y KA
Sbjct: 69 LNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHK------NEHARRYLSKATTLEK 122
Query: 165 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 224
Y A G ++ + D A+ Y A C +G+ Y +N A +
Sbjct: 123 TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFF 182
Query: 225 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI---------AANPTYAEAYNNL 275
ALSI P ++ +GVV G+ A + A+ + NNL
Sbjct: 183 SQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNL 242
Query: 276 GVLYRDAGSISLAIDAYEQCLKIDPDSRNA 305
G + R + A+D + Q L + P + +
Sbjct: 243 GHVCRKLKKYAEALDYHRQALVLIPQNAST 272
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 180 bits (458), Expect = 8e-51
Identities = 33/251 (13%), Positives = 65/251 (25%), Gaps = 16/251 (6%)
Query: 79 GCYEKAALER--------PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 130
G Y K + + ++ + D + + P
Sbjct: 1 GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP 60
Query: 131 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK-FDMAIVF 189
L +L +L K + + + +G Y + + A +
Sbjct: 61 VHIGTLVELNKANEL-------FYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRY 113
Query: 190 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 249
A A G + D+A+ Y A + + +G+ Y +
Sbjct: 114 LSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN 173
Query: 250 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 309
A +A++ P + +GV+ G A + L+ N
Sbjct: 174 NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD 233
Query: 310 LLAMNYINEGH 320
N GH
Sbjct: 234 KWEPLLNNLGH 244
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 5e-36
Identities = 29/199 (14%), Positives = 64/199 (32%), Gaps = 23/199 (11%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+A+Y A + + + KLA + + +AL I P +
Sbjct: 145 MAAYFTAAQLMKGCHLPMLYIGLEYGLTN-NSKLA------ERFFSQALSIAPEDPFVMH 197
Query: 63 NLGVVYSELMQYDTALGCYEKA---------ALERPMYAEAYCNMGVIYKNRGDLESAIA 113
+GVV + ++ TA + A + + N+G + + A+
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257
Query: 114 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL 173
+ + L + P + + + +G + V Y+ AL ++ L
Sbjct: 258 YHRQALVLIPQNASTYSAIGYIHSLMG-------NFENAVDYFHTALGLRRDDTFSVTML 310
Query: 174 GVAYGEMLKFDMAIVFYEL 192
G + A + ++
Sbjct: 311 GHCIEMYIGDSEAYIGADI 329
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 225 bits (576), Expect = 1e-68
Identities = 49/244 (20%), Positives = 89/244 (36%), Gaps = 11/244 (4%)
Query: 44 IQKYYEALKIDPHYAPAYYNLGVVY----SELMQYDTALGCYEKAALERPMYAEAYCNMG 99
++ + + P + G SE Y+ A + KA E A Y N
Sbjct: 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFA 64
Query: 100 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 159
+ + +LE A+A Y++ L + + A + ++KA
Sbjct: 65 NLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVK-------EMYKEAKDMFEKA 117
Query: 160 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 219
L D Y LG ++ + +A+ + + A N + EA G+ + LD+
Sbjct: 118 LRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177
Query: 220 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 279
A+ + P + + N GV Y + + A EM++KAI P + A + +L
Sbjct: 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237
Query: 280 RDAG 283
Sbjct: 238 HHHH 241
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 216 bits (553), Expect = 2e-65
Identities = 47/248 (18%), Positives = 93/248 (37%), Gaps = 11/248 (4%)
Query: 75 DTALGCYEKAALERPMYAEAYCNMGVIYKNR----GDLESAIACYERCLAVSPNFEIAKN 130
++ + ++ P + G R GD E A + + + + I
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYI 61
Query: 131 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 190
N A L+ + ++ + +A+Y KAL + A A Y G Y + A +
Sbjct: 62 NFANLLSSVN-------ELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMF 114
Query: 191 ELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 250
E A + LG + + A+ Q A+ + N +++ G+ +G
Sbjct: 115 EKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM 174
Query: 251 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 310
+D A +P +A+A+ N GV Y + A++ ++ + I PD A +
Sbjct: 175 LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234
Query: 311 LAMNYINE 318
L ++ +
Sbjct: 235 LLGHHHHH 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 182 bits (465), Expect = 7e-53
Identities = 44/248 (17%), Positives = 83/248 (33%), Gaps = 48/248 (19%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
++ KA+ + AI + L + + Y +AL++D A AYY
Sbjct: 43 AEAFTKAIEENKED-------AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYY 95
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 122
G VY Y A +EKA + + +G + + A+ +R + ++
Sbjct: 96 GAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155
Query: 123 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 182
N +A + G+
Sbjct: 156 EN-----------------------------------------DTEARFQFGMCLANEGM 174
Query: 183 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 242
D A+ + +P A+A N GV Y ++N +KA+E A+ I+P+ +L+
Sbjct: 175 LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234
Query: 243 VVYTVQGK 250
++
Sbjct: 235 LLGHHHHH 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 181 bits (463), Expect = 1e-52
Identities = 35/202 (17%), Positives = 69/202 (34%), Gaps = 3/202 (1%)
Query: 108 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 167
+ S+ + + P + + GD + + KA+ N A
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQ---QMGRGSEFGDYEKAAEAFTKAIEENKEDA 57
Query: 168 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 227
N + + + A+ FY+ A + A A G +Y ++ +A + ++ A
Sbjct: 58 IPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKA 117
Query: 228 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 287
L LG V + A +++A+ N EA G+ + G +
Sbjct: 118 LRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177
Query: 288 AIDAYEQCLKIDPDSRNAGQNR 309
A+ + + DP +A N
Sbjct: 178 ALSQFAAVTEQDPGHADAFYNA 199
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 7e-09
Identities = 8/72 (11%), Positives = 23/72 (31%), Gaps = 7/72 (9%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
++ + DP + A + N + ++ +A+ I P + A +
Sbjct: 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKE-------NREKALEMLDKAIDIQPDHMLALH 231
Query: 63 NLGVVYSELMQY 74
++ +
Sbjct: 232 AKKLLGHHHHHH 243
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 230 bits (587), Expect = 4e-67
Identities = 33/311 (10%), Positives = 83/311 (26%), Gaps = 14/311 (4%)
Query: 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 61
L+ +A P + + G + Q + +A + P A
Sbjct: 159 LLPVLCQAHGLTPEQ-------VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAI 211
Query: 62 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 121
+ G L L +A P A + G + ++ + + +
Sbjct: 212 ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGL 271
Query: 122 SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 181
+P +A + + L + + + +A A+ + G +
Sbjct: 272 TPQQVVAIASNSGGKQALE-------TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 324
Query: 182 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 241
+ A P A + + + + + + A + P ++ +
Sbjct: 325 TVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASN 384
Query: 242 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301
G + ++ +A P A + + ++ + Q + P
Sbjct: 385 GGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQ 444
Query: 302 SRNAGQNRLLA 312
A +
Sbjct: 445 QVVAIASNGGG 455
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 225 bits (575), Expect = 2e-65
Identities = 32/311 (10%), Positives = 82/311 (26%), Gaps = 14/311 (4%)
Query: 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 61
L+ +A P + + + Q + +A + P A
Sbjct: 125 LLPVLCQAHGLTPEQ-------VVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAI 177
Query: 62 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 121
+ G L L +A P A + G + ++ + + +
Sbjct: 178 ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGL 237
Query: 122 SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 181
+P +A + L + + + +A A+ + +
Sbjct: 238 TPQQVVAIASNGGGKQAL-------ETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALE 290
Query: 182 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 241
+ A P A + G + + + + + A + P ++ +
Sbjct: 291 TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASH 350
Query: 242 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301
+ ++ +A P A + G + ++ + Q + P+
Sbjct: 351 DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPE 410
Query: 302 SRNAGQNRLLA 312
A +
Sbjct: 411 QVVAIASHDGG 421
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 223 bits (569), Expect = 1e-64
Identities = 31/311 (9%), Positives = 81/311 (26%), Gaps = 14/311 (4%)
Query: 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 61
L+ +A P + + + Q + +A + P A
Sbjct: 91 LLPVLCQAHGLTPQQ-------VVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAI 143
Query: 62 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 121
+ L L +A P A + G + ++ + + +
Sbjct: 144 ASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGL 203
Query: 122 SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 181
+P +A + L + + + +A A+ + G +
Sbjct: 204 TPQQVVAIASNGGGKQAL-------ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 256
Query: 182 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 241
+ A P A + + + + + + A + P ++ +
Sbjct: 257 TVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 316
Query: 242 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301
G + ++ +A P A + + ++ + Q + P+
Sbjct: 317 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE 376
Query: 302 SRNAGQNRLLA 312
A +
Sbjct: 377 QVVAIASNGGG 387
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 218 bits (558), Expect = 4e-63
Identities = 32/302 (10%), Positives = 78/302 (25%), Gaps = 14/302 (4%)
Query: 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 61
L+ +A P + + G + Q + +A + P A
Sbjct: 193 LLPVLCQAHGLTPQQ-------VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAI 245
Query: 62 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 121
+ G L L +A P A + + ++ + + +
Sbjct: 246 ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGL 305
Query: 122 SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 181
+P +A + L + + + +A A+ + +
Sbjct: 306 TPQQVVAIASNGGGKQALE-------TVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALE 358
Query: 182 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 241
+ A P A + G + + + + + A + P ++ +
Sbjct: 359 TVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASH 418
Query: 242 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301
+ ++ +A P A + G SI + + L +
Sbjct: 419 DGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTN 478
Query: 302 SR 303
Sbjct: 479 DH 480
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 208 bits (532), Expect = 2e-59
Identities = 38/317 (11%), Positives = 86/317 (27%), Gaps = 17/317 (5%)
Query: 5 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLA----GNTQDGIQKYYEAL-----KIDP 55
S +AL A + + L D G LK+A + + + AL + P
Sbjct: 11 SGARALEALLTVAGELRGPPLQL-DTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTP 69
Query: 56 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACY 115
A + L L +A P A + + ++ +
Sbjct: 70 EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 129
Query: 116 ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGV 175
+ ++P +A + L + + +A A+ + G
Sbjct: 130 CQAHGLTPEQVVAIASHDGGKQALE-------TVQALLPVLCQAHGLTPEQVVAIASNGG 182
Query: 176 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 235
+ + A P A + G + + + + + A + P
Sbjct: 183 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQV 242
Query: 236 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 295
++ + G + ++ +A P A + + ++ + Q
Sbjct: 243 VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQA 302
Query: 296 LKIDPDSRNAGQNRLLA 312
+ P A +
Sbjct: 303 HGLTPQQVVAIASNGGG 319
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 180 bits (458), Expect = 3e-49
Identities = 28/285 (9%), Positives = 74/285 (25%), Gaps = 11/285 (3%)
Query: 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE--LMQYDTALGCYEKAALE 87
+ L + L++D G V + + + AL
Sbjct: 10 WSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNAL--TGAPLNL 67
Query: 88 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 147
P A + + ++ + + ++P +A + L
Sbjct: 68 TPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQAL-------E 120
Query: 148 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL 207
+ + + +A A+ + + + A P A +
Sbjct: 121 TVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASN 180
Query: 208 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 267
G + + + + + A + P ++ + G + ++ +A P
Sbjct: 181 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 240
Query: 268 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 312
A + G + ++ + Q + P A +
Sbjct: 241 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGG 285
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 4e-23
Identities = 22/145 (15%), Positives = 42/145 (28%), Gaps = 13/145 (8%)
Query: 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 61
L+ +A P + + G + Q + +A + P A
Sbjct: 363 LLPVLCQAHGLTPEQ-------VVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAI 415
Query: 62 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 121
+ L L +A P A + G + + ++ + LA
Sbjct: 416 ASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAA 475
Query: 122 SPNFEIAKNNMAIALTDLGTKVKLE 146
N + +AL LG + L+
Sbjct: 476 LTN------DHLVALACLGGRPALD 494
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 6e-18
Identities = 14/152 (9%), Positives = 39/152 (25%), Gaps = 10/152 (6%)
Query: 166 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 225
+ + A +A + G + +AV ++
Sbjct: 3 HHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVT-----AVEAVHAWR 57
Query: 226 MALS-----IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 280
AL+ + P ++ + + ++ +A P A + +
Sbjct: 58 NALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQ 117
Query: 281 DAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 312
++ + Q + P+ A +
Sbjct: 118 ALETVQRLLPVLCQAHGLTPEQVVAIASHDGG 149
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 230 bits (589), Expect = 5e-67
Identities = 48/325 (14%), Positives = 96/325 (29%), Gaps = 29/325 (8%)
Query: 4 ASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN 63
A AL S +A L K + + + A A
Sbjct: 194 ALLSDALQRLYSATDEGYLVANDLLT-----KSTDMYHSLLSANTVDDPLRENAALALCY 248
Query: 64 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 123
G+ + A +++ P +Y + + ++ + + +++ + ++P
Sbjct: 249 TGIFHFLKNNLLDAQVLLQESINLHP-TPNSYIFLALTLADKENSQEFFKFFQKAVDLNP 307
Query: 124 NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 183
+ + L D ++KA N L + KF
Sbjct: 308 EYPPTYYHRGQMYFILQ-------DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKF 360
Query: 184 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 243
+ F+ P E I DR + D A++ Y +A ++ + +G
Sbjct: 361 TESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGP 420
Query: 244 VYT----------------VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 287
+ + K +AA +++ KA +P +A L L I
Sbjct: 421 LIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE 480
Query: 288 AIDAYEQCLKIDPDSRNAGQNRLLA 312
AI+ +E + Q A
Sbjct: 481 AIELFEDSAILARTMDEKLQATTFA 505
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 211 bits (539), Expect = 5e-60
Identities = 52/349 (14%), Positives = 112/349 (32%), Gaps = 47/349 (13%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+ PS + A A+ L + G A N + I+ Y A+++DP+ Y
Sbjct: 7 EPDIAQLKGLSPSQRQA---YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYS 63
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 122
N+ Y + + KA +P +++A ++ G+ A+ L+++
Sbjct: 64 NISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLN 122
Query: 123 PNFEIA-------------------------KNNMAIALTDLGT---------------K 142
+F+ A + + L +
Sbjct: 123 GDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182
Query: 143 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE--MLKFDMAIVFYELAFHFNPHC 200
V + + A AL + D Y + + + + +
Sbjct: 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENA 242
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 260
A A G+ + ++NL A Q ++++ P S L + + + +K
Sbjct: 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQK 301
Query: 261 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 309
A+ NP Y Y + G +Y A + +++ ++P++
Sbjct: 302 AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQL 350
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 209 bits (534), Expect = 2e-59
Identities = 54/299 (18%), Positives = 99/299 (33%), Gaps = 40/299 (13%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
++++ P+ L +L N+Q+ + + +A+ ++P Y P YY
Sbjct: 263 QVLLQESINLHPTPN--------SYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYY 314
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 122
+ G +Y L Y A ++KA P Y + + +G + A +
Sbjct: 315 HRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374
Query: 123 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML- 181
P A LTD G D + + Y A +G G+
Sbjct: 375 PTLPEVPTFFAEILTDRG-------DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427
Query: 182 ---------------KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 226
KF+ AI A +P +A L + + +D+A+E ++
Sbjct: 428 LARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487
Query: 227 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 285
+ + + L A A I+K + A+P + YR G +
Sbjct: 488 SAILARTMDEKLQATT---------FAEAAKIQKRLRADPIISAKMELTLARYRAKGML 537
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 199 bits (507), Expect = 1e-55
Identities = 48/336 (14%), Positives = 84/336 (25%), Gaps = 46/336 (13%)
Query: 2 LVASYHKALSADPSYKPAAECLAIVLTDL-GTSLKLAGNTQDGIQKYYEALKIDPHYAPA 60
L + PS A I + L +S+ + N +AL+
Sbjct: 150 LSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDE 209
Query: 61 YYNLGVVYSE--LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 118
Y + Y + L R A A C G+ + + +L A +
Sbjct: 210 GYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQES 269
Query: 119 LAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 178
+ + P ++ L +
Sbjct: 270 INLHPT------------------------------------------PNSYIFLALTLA 287
Query: 179 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 238
+ F++ A NP + G +Y + A E +Q A S+ P
Sbjct: 288 DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPY 347
Query: 239 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 298
L + QGK + + PT E + D G AI Y+ ++
Sbjct: 348 IQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407
Query: 299 DPDSRNAGQNRLLAMNYINEGHD-DKLFEAHRDWGK 333
+ + D K
Sbjct: 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK 443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 3e-41
Identities = 38/282 (13%), Positives = 73/282 (25%), Gaps = 25/282 (8%)
Query: 38 GNTQDGIQKYYEALKIDPH----YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 93
G+ +G + + P YA N G + ++ A+ Y+ A P
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 94 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 153
Y N+ Y + GDLE I + L + P+ A A A L G+ +
Sbjct: 61 FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESL-------GNFTDAM 113
Query: 154 AYYKKAL----YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 209
+ + + + P + G+
Sbjct: 114 FDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGI 173
Query: 210 IYKD--------RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ--GKMDAAAEMIE 259
N D A AL + + + + +
Sbjct: 174 FDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT 233
Query: 260 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301
A A G+ + ++ A ++ + + P
Sbjct: 234 VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT 275
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 5e-27
Identities = 30/170 (17%), Positives = 56/170 (32%), Gaps = 5/170 (2%)
Query: 182 KFDMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 237
+P A N G + N ++A++ YQ A+ + PN
Sbjct: 2 SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61
Query: 238 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 297
+N+ Y G ++ E KA+ P +++A G+ + A+ L
Sbjct: 62 YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSV-LS 120
Query: 298 IDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDN 347
++ D A +L N + +D G+ L S +
Sbjct: 121 LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASF 170
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 5e-25
Identities = 31/216 (14%), Positives = 64/216 (29%), Gaps = 30/216 (13%)
Query: 147 GDINQGVAYYKKAL----YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 202
G G + YA + N G + F+ AI +Y+ A +P+
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 203 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 262
+N+ Y +L+K +E AL IKP+ S++L G A + +
Sbjct: 61 FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL-SVL 119
Query: 263 AANPTYAEA-------------------------YNNLGVLYRDAGSISLAIDAYEQCLK 297
+ N + A + S++ ++ L+
Sbjct: 120 SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179
Query: 298 IDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 333
+ + ++ + A+ +
Sbjct: 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAN 215
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 218 bits (557), Expect = 9e-66
Identities = 41/257 (15%), Positives = 82/257 (31%), Gaps = 12/257 (4%)
Query: 53 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 112
+ + +++ G+V D K R +AY +G+ Y RG+ E A
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMGDQN---PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAK 57
Query: 113 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 172
+ L + P+ A +A+ + Y+KAL + A + N
Sbjct: 58 VPLRKALEIDPSSADAHAALAVVFQTEM-------EPKLADEEYRKALASDSRNARVLNN 110
Query: 173 LGVAYGEMLKFDMAIVFYE--LAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 230
G E +++ A P + NLG++ +A E ++ +L +
Sbjct: 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL 170
Query: 231 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 290
N + + + + A + + A + L + A
Sbjct: 171 NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAAS 230
Query: 291 AYEQCLKIDPDSRNAGQ 307
Q ++ P S +
Sbjct: 231 YGLQLKRLYPGSLEYQE 247
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 190 bits (484), Expect = 2e-55
Identities = 41/234 (17%), Positives = 69/234 (29%), Gaps = 16/234 (6%)
Query: 5 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 64
+ K LG GNT+ +AL+IDP A A+ L
Sbjct: 25 NPLKTDKGRDEA-------RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAAL 77
Query: 65 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS-- 122
VV+ M+ A Y KA A N G + E A +
Sbjct: 78 AVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLY 137
Query: 123 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 182
P N+ + + Q Y++K+L N + + + +
Sbjct: 138 PERSRVFENLGLVSLQM-------KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE 190
Query: 183 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 236
+ A +Y+L A + + K ++ D A + P +
Sbjct: 191 YVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 160 bits (408), Expect = 8e-45
Identities = 44/215 (20%), Positives = 81/215 (37%), Gaps = 16/215 (7%)
Query: 130 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 189
++ + L G GD N K DA LG+ Y + + A V
Sbjct: 8 HHHSSGLVPRG---SHMGDQN-----PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVP 59
Query: 190 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 249
A +P A+A L V+++ A E Y+ AL+ ++ LNN G Q
Sbjct: 60 LRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQK 119
Query: 250 KMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 307
+ + A + + +A P + + NLG++ + A + +E+ L+++ + +
Sbjct: 120 RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVAL 179
Query: 308 NRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQY 342
+A E + A R + F + Q
Sbjct: 180 E--MADLLYKER---EYVPA-RQYYDLFAQGGGQN 208
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 1e-21
Identities = 15/130 (11%), Positives = 39/130 (30%), Gaps = 9/130 (6%)
Query: 3 VASYHKALSA--DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 60
+A P + V +LG + + ++L+++ +
Sbjct: 125 YQRLLEASQDTLYPER-------SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSV 177
Query: 61 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 120
+ + + +Y A Y+ A A + + K D ++A + +
Sbjct: 178 ALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237
Query: 121 VSPNFEIAKN 130
+ P +
Sbjct: 238 LYPGSLEYQE 247
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 221 bits (565), Expect = 2e-65
Identities = 41/341 (12%), Positives = 94/341 (27%), Gaps = 45/341 (13%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
++ +H A+ DP I T G ++ + + + + + A
Sbjct: 23 LSQFHAAVDGDPDN-------YIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARL 75
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK---------------NRGD 107
G + + + D A ++K P E + K + D
Sbjct: 76 QRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD 135
Query: 108 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 167
+AI ++ L V + A G+ + ++ K A
Sbjct: 136 YTAAITFLDKILEVCVWDAELRELRAECFIKE-------GEPRKAISDLKAASKLKSDNT 188
Query: 168 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL------------GVIYKDRD 215
+A Y + Y ++ ++++ + +
Sbjct: 189 EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDG 248
Query: 216 NLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 271
A Y+ + +P+ +S + ++ K A + + + P A
Sbjct: 249 RYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNA 308
Query: 272 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 312
+ Y AI YE + + + + + A
Sbjct: 309 LKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKA 349
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 190 bits (484), Expect = 3e-54
Identities = 41/284 (14%), Positives = 90/284 (31%), Gaps = 38/284 (13%)
Query: 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 89
LG L AG D + +++ A+ DP AYY V+ + + AL K +
Sbjct: 9 LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM 68
Query: 90 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 149
+ A G + +G L+ A +++ L +P+ + K
Sbjct: 69 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEA------------------ 110
Query: 150 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 209
++ + + + + + AI F + AE
Sbjct: 111 --------ESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE 162
Query: 210 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 269
+ KA+ + A +K + +++ + +Y G + + + + + + +
Sbjct: 163 CFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK 222
Query: 270 EAYNNL------------GVLYRDAGSISLAIDAYEQCLKIDPD 301
+ + G + A YE +K +P
Sbjct: 223 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 266
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 179 bits (455), Expect = 4e-50
Identities = 39/291 (13%), Positives = 85/291 (29%), Gaps = 41/291 (14%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLT--------DLGTSLKLAGNTQDGIQKYYEALKID 54
+ K L ++PS + E + ++ + I + L++
Sbjct: 91 EDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC 150
Query: 55 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 114
A + + + A+ + A+ + EA+ + +Y GD E +++
Sbjct: 151 VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSE 210
Query: 115 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 174
CL + + + + KL I +
Sbjct: 211 VRECLKLDQDHKRCFAHYKQVK-------KLNKLIESAEELIRDG--------------- 248
Query: 175 VAYGEMLKFDMAIVFYELAFHFNPHCAE----ACNNLGVIYKDRDNLDKAVECYQMALSI 230
++ A YE P AE + + + + +A+ L +
Sbjct: 249 -------RYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301
Query: 231 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 281
+P+ +L + Y ++ D A + E A N + L R
Sbjct: 302 EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 6e-34
Identities = 29/233 (12%), Positives = 54/233 (23%), Gaps = 56/233 (24%)
Query: 92 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 151
E + +G G L A++ + + P+
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD--------------------------- 35
Query: 152 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 211
A Y + M K A+ A G +
Sbjct: 36 --------------NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81
Query: 212 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV---------------QGKMDAAAE 256
+ LD+A + ++ L P+ + + AA
Sbjct: 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAIT 141
Query: 257 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 309
++K + AE + G AI + K+ D+ A
Sbjct: 142 FLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKI 194
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 9e-29
Identities = 26/174 (14%), Positives = 55/174 (31%), Gaps = 18/174 (10%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 226
+ LG + A+ + A +P A ++ A+
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 227 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL-------- 278
+++K +F+ + G + QGK+D A + +K + +NP+ E L
Sbjct: 63 VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122
Query: 279 -------YRDAGSISLAIDAYEQCLKIDPDSRNAGQNR---LLAMNYINEGHDD 322
D + AI ++ L++ + R + + D
Sbjct: 123 LRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD 176
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 7e-28
Identities = 25/147 (17%), Positives = 45/147 (30%), Gaps = 9/147 (6%)
Query: 3 VASYHKALSADPSYKPAAECLAIV-----LTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 57
++ + L D +K V L + L G D KY +K +P
Sbjct: 208 LSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSV 267
Query: 58 A----PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 113
A + + +S+ + A+ + P A + Y + AI
Sbjct: 268 AEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ 327
Query: 114 CYERCLAVSPNFEIAKNNMAIALTDLG 140
YE + N + + + A L
Sbjct: 328 DYEAAQEHNENDQQIREGLEKAQRLLK 354
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 2e-26
Identities = 25/133 (18%), Positives = 41/133 (30%)
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 260
E LG L A+ + A+ P+ + V+ GK AA + K
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 261 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 320
IA + A G L G + A D +++ LK +P + + +
Sbjct: 63 VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122
Query: 321 DDKLFEAHRDWGK 333
D
Sbjct: 123 LRSQALDAFDGAD 135
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 2e-26
Identities = 28/196 (14%), Positives = 52/196 (26%), Gaps = 31/196 (15%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
++ A + T G+ + + + E LK+D + +
Sbjct: 174 ISDLKAASKLKSDN-------TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA 226
Query: 63 NL------------GVVYSELMQYDTALGCYEKAALERPMYAE----AYCNMGVIYKNRG 106
+ +Y A YE P AE + + +
Sbjct: 227 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDE 286
Query: 107 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY 166
AI L + P+ A + A A ++ + Y+ A +N +
Sbjct: 287 KPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEE-------MYDEAIQDYEAAQEHNEND 339
Query: 167 ADAMYNLGVAYGEMLK 182
L A LK
Sbjct: 340 QQIREGLEKAQRL-LK 354
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 1e-06
Identities = 12/72 (16%), Positives = 21/72 (29%), Gaps = 7/72 (9%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+ + L +P A L D + + + IQ Y A + + +
Sbjct: 292 IRICSEVLQMEPDNVNA-------LKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIRE 344
Query: 63 NLGVVYSELMQY 74
L L Q
Sbjct: 345 GLEKAQRLLKQS 356
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 217 bits (555), Expect = 3e-65
Identities = 46/272 (16%), Positives = 90/272 (33%), Gaps = 15/272 (5%)
Query: 30 LGTSLKLAGNTQDGIQKYYEALK----IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 85
L L+ + + + + L D A Y GV+Y L A + +A
Sbjct: 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 70
Query: 86 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 145
RP E + +G+ G+ ++A ++ L + P + A N IAL
Sbjct: 71 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG------ 124
Query: 146 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF---YELAFHFNPHCAE 202
G + + L +A ++ + V +E +
Sbjct: 125 -GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI 183
Query: 203 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 262
LG I ++ +++ S+ + S++ LG Y G +D+A + + A+
Sbjct: 184 VEFYLGNIS-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242
Query: 263 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 294
A N + + G + +Q
Sbjct: 243 ANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 196 bits (500), Expect = 2e-57
Identities = 42/254 (16%), Positives = 81/254 (31%), Gaps = 8/254 (3%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+A + L++ A +L + G G + +AL I P +
Sbjct: 25 LARMEQILASRALTDDE---RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFN 81
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 122
LG+ ++ +D A ++ P Y A+ N G+ G + A
Sbjct: 82 YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD 141
Query: 123 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 182
PN + +A L K E +++K+ W + + LG E
Sbjct: 142 PNDPFRSLWLYLAEQKLDEKQAKEVLK----QHFEKSDKEQWGWNIVEFYLGNIS-EQTL 196
Query: 183 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 242
+ H +E LG Y +LD A +++A++ +
Sbjct: 197 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYAL 256
Query: 243 VVYTVQGKMDAAAE 256
+ ++ G+
Sbjct: 257 LELSLLGQDQDDLA 270
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 195 bits (499), Expect = 3e-57
Identities = 43/268 (16%), Positives = 88/268 (32%), Gaps = 15/268 (5%)
Query: 58 APAYYNLGVVYSELMQYDTALGCYEKA----ALERPMYAEAYCNMGVIYKNRGDLESAIA 113
L V +Q + L E+ AL A+ GV+Y + G A
Sbjct: 5 WRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARN 64
Query: 114 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL 173
+ + LA+ P+ N + I LT G + + + L + Y A N
Sbjct: 65 DFSQALAIRPDMPEVFNYLGIYLTQAG-------NFDAAYEAFDSVLELDPTYNYAHLNR 117
Query: 174 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA---VECYQMALSI 230
G+A + +A + +P+ L + + D + ++ +
Sbjct: 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 177
Query: 231 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 290
+ ++ LG + Q M+ + +E LG Y G + A
Sbjct: 178 QWGWNIVEFYLGNIS-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATA 236
Query: 291 AYEQCLKIDPDSRNAGQNRLLAMNYINE 318
++ + + + + LL ++ + +
Sbjct: 237 LFKLAVANNVHNFVEHRYALLELSLLGQ 264
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 4e-38
Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 6/200 (3%)
Query: 128 AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 187
+A+ L + E + + + A +Y GV Y + +A
Sbjct: 7 KSEVLAVPLQPTL---QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALAR 63
Query: 188 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 247
+ A P E N LG+ N D A E + L + P ++ + N G+
Sbjct: 64 NDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 123
Query: 248 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 307
G+ A + + +P L + + A + +Q + +
Sbjct: 124 GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE-KQAKEVLKQHFEKSDKEQWGWN 182
Query: 308 NRLLAMNYINEGHDDKLFEA 327
+ I+E +
Sbjct: 183 IVEFYLGNISE--QTLMERL 200
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 216 bits (552), Expect = 5e-65
Identities = 41/261 (15%), Positives = 78/261 (29%), Gaps = 9/261 (3%)
Query: 55 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 114
A G + + Q+D A+ Y KA N +G+ E+AI+
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAIST 60
Query: 115 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 174
+ ++ + +G + + KK + Y +
Sbjct: 61 LNDAVEQGREMRADYKVISKSFARIG-------NAYHKLGDLKKTIEYYQKSLTE-HRTA 112
Query: 175 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 234
++ + + E + NP AE G Y + + AV+ Y + P
Sbjct: 113 DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172
Query: 235 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 294
++ +N A KAI +P + AY + A++ +
Sbjct: 173 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232
Query: 295 CLKIDPDSRNAGQNRLLAMNY 315
D + N R + Y
Sbjct: 233 ARTKDAEVNNGSSAREIDQLY 253
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 209 bits (534), Expect = 2e-62
Identities = 36/255 (14%), Positives = 75/255 (29%), Gaps = 9/255 (3%)
Query: 23 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 82
+A G A + I+ Y +A ++ N E +Y+TA+
Sbjct: 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAISTLN 62
Query: 83 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 142
A + Y + + G+ + ++ + + A LT L
Sbjct: 63 DAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE-HRTADILTKL--- 118
Query: 143 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 202
+ + + + Y N A+ G Y + A+ Y P A
Sbjct: 119 ----RNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR 174
Query: 203 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 262
+N + +A+ A+ PNF ++ + +A E ++ A
Sbjct: 175 GYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234
Query: 263 AANPTYAEAYNNLGV 277
+ + +
Sbjct: 235 TKDAEVNNGSSAREI 249
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 3e-50
Identities = 31/241 (12%), Positives = 60/241 (24%), Gaps = 16/241 (6%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+ Y+KA L + + G + I +A++ Y
Sbjct: 25 IEHYNKAWELHKDI--------TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK 76
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 122
+ ++ + LG +K + I + E + E V+
Sbjct: 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVN 135
Query: 123 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 182
P D V Y + + A N A +++
Sbjct: 136 PEKAEEARLEGKEYFTK-------SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS 188
Query: 183 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 242
F AI A +P+ A A+E A + + +
Sbjct: 189 FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSARE 248
Query: 243 V 243
+
Sbjct: 249 I 249
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 1e-33
Identities = 27/174 (15%), Positives = 46/174 (26%), Gaps = 15/174 (8%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+ K + A +LT L N + ++K ++P A
Sbjct: 92 LGDLKKTIEYYQKS-LTEHRTADILTKLR-------NAEKELKKAEAEAYVNPEKAEEAR 143
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 122
G Y + A+ Y + P A Y N AIA + +
Sbjct: 144 LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203
Query: 123 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 176
PNF A A A + + + A + + +
Sbjct: 204 PNFVRAYIRKATAQIAV-------KEYASALETLDAARTKDAEVNNGSSAREID 250
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 8e-29
Identities = 21/138 (15%), Positives = 38/138 (27%), Gaps = 7/138 (5%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+ +P A G + + ++ Y E +K P A Y
Sbjct: 125 LKKAEAEAYVNPEK-------AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYS 177
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 122
N ++LM + A+ KA + P + AY + SA+ +
Sbjct: 178 NRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237
Query: 123 PNFEIAKNNMAIALTDLG 140
+ I
Sbjct: 238 AEVNNGSSAREIDQLYYK 255
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 4e-16
Identities = 16/107 (14%), Positives = 33/107 (30%), Gaps = 7/107 (6%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
V +Y + + P A L L + + I +A++ DP++ AY
Sbjct: 159 VKAYTEMIKRAPEDARGYSNRAAALAKLM-------SFPEAIADCNKAIEKDPNFVRAYI 211
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 109
+ +Y +AL + A + + +
Sbjct: 212 RKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 258
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 8e-15
Identities = 18/119 (15%), Positives = 34/119 (28%), Gaps = 7/119 (5%)
Query: 232 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 291
+ + G + + D A E KA + NN + G AI
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAIST 60
Query: 292 YEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKD 350
++ + R + + I + D K+ + Y + + T D
Sbjct: 61 LNDAVEQGREMRADYKVISKSFARIG-----NAYHKLGDL-KKTIEYYQKSLTEHRTAD 113
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 223 bits (569), Expect = 2e-64
Identities = 39/296 (13%), Positives = 91/296 (30%), Gaps = 19/296 (6%)
Query: 6 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 65
+ + L + + E LAI L G L + + +A+++ P +Y +
Sbjct: 219 FEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN-SYIYMA 277
Query: 66 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 125
++ ++ ++KA + Y + G + + + A +++ + P
Sbjct: 278 LIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN 337
Query: 126 EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 185
+A + + +A + + FD
Sbjct: 338 IFPYIQLACLAYREN-------KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDK 390
Query: 186 AIVFYELAFHFNPHCAEACNNLGVIY---------KDRDNLDKAVECYQMALSIKPNFSQ 236
A+ Y+LA + + +N +A + A + P Q
Sbjct: 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQ 450
Query: 237 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 292
+ L + Q +D A + E++ T E + + +A + I +
Sbjct: 451 AKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT--FAEAAKVQQRIRSD 504
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 220 bits (561), Expect = 3e-63
Identities = 55/323 (17%), Positives = 101/323 (31%), Gaps = 22/323 (6%)
Query: 4 ASYHKALSADPSYKPAAECLAIVLTD-----LGTSLKLAGNTQDGIQKYYEALKIDPHYA 58
A+Y ++ AD L + + K A ++ + K E K+ A
Sbjct: 178 ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLA 237
Query: 59 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 118
+ + G+ A +KA +E +Y M +I +R D +++
Sbjct: 238 ISLEHTGIFKFLKNDPLGAHEDIKKA-IELFPRVNSYIYMALIMADRNDSTEYYNYFDKA 296
Query: 119 LAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 178
L + N + L + +Q + KA + L
Sbjct: 297 LKLDSNNSSVYYHRGQMNFILQ-------NYDQAGKDFDKAKELDPENIFPYIQLACLAY 349
Query: 179 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 238
KFD + A P E N I D+++ DKA++ Y +A+ ++
Sbjct: 350 RENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY 409
Query: 239 NNLGVVYT---------VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 289
+ + A ++EKA +P +A L + I AI
Sbjct: 410 VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAI 469
Query: 290 DAYEQCLKIDPDSRNAGQNRLLA 312
+E+ + Q A
Sbjct: 470 TLFEESADLARTMEEKLQAITFA 492
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 203 bits (517), Expect = 3e-57
Identities = 48/333 (14%), Positives = 93/333 (27%), Gaps = 35/333 (10%)
Query: 4 ASYHKALSADPSYKPAAECLAIVLTDLGTSLKL------AGNTQDGIQKYYEALKIDPHY 57
A + + S+ + Y E+ + D
Sbjct: 131 GDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKEL 190
Query: 58 APAYYNLGVVYSE------------LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 105
NL E ++ L + + A + + G+ +
Sbjct: 191 MNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK 250
Query: 106 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 165
D A ++ + + P + MA+ + D D + Y+ KAL + +
Sbjct: 251 NDPLGAHEDIKKAIELFPRVN-SYIYMALIMADRN-------DSTEYYNYFDKALKLDSN 302
Query: 166 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 225
+ Y+ G + +D A ++ A +P L + + D +
Sbjct: 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFS 362
Query: 226 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA--- 282
A P + N + T + D A + + AI Y + L A
Sbjct: 363 EAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLL 422
Query: 283 ------GSISLAIDAYEQCLKIDPDSRNAGQNR 309
+ A + E+ K+DP S A
Sbjct: 423 TRNPTVENFIEATNLLEKASKLDPRSEQAKIGL 455
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 185 bits (471), Expect = 7e-51
Identities = 43/280 (15%), Positives = 89/280 (31%), Gaps = 33/280 (11%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
KA+ P + + ++ + + +ALK+D + + YY
Sbjct: 257 HEDIKKAIELFPRVN--------SYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYY 308
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 122
+ G + L YD A ++KA P Y + + + +
Sbjct: 309 HRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF 368
Query: 123 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML- 181
P N A LTD D ++ + Y A+ + G+
Sbjct: 369 PEAPEVPNFFAEILTDKN-------DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL 421
Query: 182 --------KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 233
F A E A +P +A L + ++++D+A+ ++ + +
Sbjct: 422 LTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481
Query: 234 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 273
+ L + A A +++ I ++P A+
Sbjct: 482 MEEKLQAIT---------FAEAAKVQQRIRSDPVLAKKIQ 512
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 181 bits (462), Expect = 1e-49
Identities = 44/360 (12%), Positives = 92/360 (25%), Gaps = 49/360 (13%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLG------------------------------T 32
V KAL P Y A LG
Sbjct: 59 VEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNL 118
Query: 33 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL-------------GVVYSELMQYDTALG 79
+ + ++ A + + + + +
Sbjct: 119 NKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFA 178
Query: 80 CYEKAALERPMYAEAYCNM-----GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 134
Y+++ N+ K A +E L + E K +AI
Sbjct: 179 NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238
Query: 135 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 194
+L G L+ D KKA+ ++ + + + +++ A
Sbjct: 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELF-PRVNSYIYMALIMADRNDSTEYYNYFDKAL 297
Query: 195 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 254
+ + + + G + N D+A + + A + P L + + K D
Sbjct: 298 KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDC 357
Query: 255 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 314
+ +A P E N + D A+ Y+ ++++ +
Sbjct: 358 ETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVG 417
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 179 bits (456), Expect = 7e-49
Identities = 36/328 (10%), Positives = 92/328 (28%), Gaps = 30/328 (9%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+ Y+ AL + ++L G+ + ++ +AL++ P Y+
Sbjct: 26 IKYYNWALELKED--------PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLL 77
Query: 63 NLGVVYSELMQYDTALGCYEKAALE---RPMYAEAYCNMGVIYKNRGDLESAIACYERCL 119
L ++ A+ +L E + + L+ +
Sbjct: 78 RRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTAT 137
Query: 120 AVSPNFEIAKNNMAIALTDLGTKVKL------EGDINQGVAYYKKALYYNWHYADAMYNL 173
A + V A Y ++ + + + NL
Sbjct: 138 ATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNL 197
Query: 174 GVAYGEML------------KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 221
E F+ + A + + G+ +++ A
Sbjct: 198 YKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAH 257
Query: 222 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 281
E + A+ + P S + ++ + +KA+ + + Y + G +
Sbjct: 258 EDIKKAIELFPRV-NSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI 316
Query: 282 AGSISLAIDAYEQCLKIDPDSRNAGQNR 309
+ A +++ ++DP++
Sbjct: 317 LQNYDQAGKDFDKAKELDPENIFPYIQL 344
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 161 bits (408), Expect = 2e-42
Identities = 49/310 (15%), Positives = 98/310 (31%), Gaps = 27/310 (8%)
Query: 23 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 82
A+ L D G D I+ Y AL++ Y NL Y + +
Sbjct: 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMST 63
Query: 83 KAALE-RPMYAEAYCNMGVIYKNRGDLESAIACYER-CLAVSPNFEIAKNNMAIALTDLG 140
K ALE +P Y++ + G A+ L N + + L
Sbjct: 64 K-ALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQA 122
Query: 141 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA---------YGEMLKFDMAIVFYE 191
KL+ + A + + + K ++ Y+
Sbjct: 123 MS-KLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYD 181
Query: 192 LAFHFNPHCAEACNNLGVIY------------KDRDNLDKAVECYQMALSIKPNFSQSLN 239
+ + +NL K ++ ++ +K + SL
Sbjct: 182 ESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241
Query: 240 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 299
+ G+ ++ A E I+KAI P +Y + ++ D + + +++ LK+D
Sbjct: 242 HTGIFKFLKNDPLGAHEDIKKAIELFPRV-NSYIYMALIMADRNDSTEYYNYFDKALKLD 300
Query: 300 PDSRNAGQNR 309
++ + +R
Sbjct: 301 SNNSSVYYHR 310
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 1e-33
Identities = 37/274 (13%), Positives = 74/274 (27%), Gaps = 34/274 (12%)
Query: 55 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 114
YA A + G + +YD A+ Y ALE Y N+ Y + GDL+ +
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNW-ALELKEDPVFYSNLSACYVSVGDLKKVVEM 61
Query: 115 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH--YADAMYN 172
+ L + P++ A A LG K + +L +++ + M
Sbjct: 62 STKALELKPDYSKVLLRRASANEGLG---KFADAMF---DLSVLSLNGDFNDASIEPMLE 115
Query: 173 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC-------------NNLGVIYKDRDNLDK 219
+ M K + A + + +
Sbjct: 116 RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPEL 175
Query: 220 AVECYQMALSIKPNFSQSLNNLGVVYT------------VQGKMDAAAEMIEKAIAANPT 267
Y + L+NL + + +
Sbjct: 176 TFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK 235
Query: 268 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301
A + + G+ A + ++ +++ P
Sbjct: 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR 269
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 6e-26
Identities = 39/254 (15%), Positives = 79/254 (31%), Gaps = 31/254 (12%)
Query: 87 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 146
E+ YA A + G + + AI Y L + + + +N++ +
Sbjct: 1 EKDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDP-VFYSNLSACYVSV------- 52
Query: 147 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE---LAFHFNPHCAEA 203
GD+ + V KAL Y+ + A + KF A+ L FN E
Sbjct: 53 GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEP 112
Query: 204 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ-------------SLNNLGVVYTVQGK 250
+ + L + A + S + K
Sbjct: 113 MLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK 172
Query: 251 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK-----IDPDSRNA 305
+ +++ A+ +NL R S A +++ + + +D ++ +
Sbjct: 173 PELTFANYDESNEADKELMNGLSNLY--KRSPESYDKADESFTKAARLFEEQLDKNNEDE 230
Query: 306 GQNRLLAMNYINEG 319
LA++ + G
Sbjct: 231 KLKEKLAISLEHTG 244
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 212 bits (543), Expect = 2e-63
Identities = 41/268 (15%), Positives = 76/268 (28%), Gaps = 21/268 (7%)
Query: 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALG---CYEKAAL 86
L N + I+ + + + Y V Y EL +YD A Y
Sbjct: 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68
Query: 87 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 146
+ + G I +G AI Y+ + + + G
Sbjct: 69 ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG------ 122
Query: 147 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 206
+ + Y +K + Y LG AY ++ A + P+
Sbjct: 123 -NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLW 181
Query: 207 LGVIYKDRDNLDK---AVECYQMALSI--------KPNFSQSLNNLGVVYTVQGKMDAAA 255
+D K A Y+ + + K ++ + YT+ A
Sbjct: 182 RARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241
Query: 256 EMIEKAIAANPTYAEAYNNLGVLYRDAG 283
+ +A +PT +A + L +
Sbjct: 242 AAWKNILALDPTNKKAIDGLKMKLEHHH 269
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 203 bits (519), Expect = 4e-60
Identities = 43/275 (15%), Positives = 74/275 (26%), Gaps = 21/275 (7%)
Query: 60 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA---CYE 116
+ + Y A+ + K ++ Y V Y + A Y
Sbjct: 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64
Query: 117 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 176
+ + L G + + Y+ A+ + D +G
Sbjct: 65 SKVNATKAKSADFEYYGKILMKK-------GQDSLAIQQYQAAVDRDTTRLDMYGQIGSY 117
Query: 177 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 236
+ F +AI + E + LG Y KA + L +KPN
Sbjct: 118 FYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYI 177
Query: 237 SLNNLGVVYTVQG---KMDAAAEMIEKAI--------AANPTYAEAYNNLGVLYRDAGSI 285
Q K A EK I EA + Y
Sbjct: 178 GYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237
Query: 286 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 320
A A++ L +DP ++ A + + + + H
Sbjct: 238 VKADAAWKNILALDPTNKKAIDGLKMKLEHHHHHH 272
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 190 bits (484), Expect = 3e-55
Identities = 36/259 (13%), Positives = 80/259 (30%), Gaps = 22/259 (8%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+ ++K + + A+ +L LA Q I+ Y+ + + +
Sbjct: 23 IEVFNKLEAKKYNSPYIYNRRAVCYYELA-KYDLA---QKDIETYFSKVNATKAKSADFE 78
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 122
G + + Q A+ Y+ A + Y +G + N+G+ AI E+ + +
Sbjct: 79 YYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT 138
Query: 123 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY---GE 179
+ A + + + + K L + A
Sbjct: 139 TTDPKVFYELGQAYYYN-------KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP 191
Query: 180 MLKFDMAIVFYELA--------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 231
K +A +YE + EA + Y + KA ++ L++
Sbjct: 192 DTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251
Query: 232 PNFSQSLNNLGVVYTVQGK 250
P ++++ L +
Sbjct: 252 PTNKKAIDGLKMKLEHHHH 270
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 185 bits (473), Expect = 1e-53
Identities = 31/233 (13%), Positives = 64/233 (27%), Gaps = 8/233 (3%)
Query: 90 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 149
M + + AI + + A N N A+ +L + DI
Sbjct: 1 MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60
Query: 150 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 209
Y + + G + + +AI Y+ A + + +G
Sbjct: 61 ET----YFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGS 116
Query: 210 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 269
+ ++ N A++ + + + LG Y + A K + P
Sbjct: 117 YFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIY 176
Query: 270 EAYNNLGVLYRDAGSIS---LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 319
Y + LA YE+ +++ ++ L
Sbjct: 177 IGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDE-LIEANEYIA 228
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 5e-07
Identities = 8/73 (10%), Positives = 17/73 (23%), Gaps = 1/73 (1%)
Query: 3 VASYHKALSADPSYKPAAE-CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 61
Y K + + L + + + + L +DP A
Sbjct: 199 KPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAI 258
Query: 62 YNLGVVYSELMQY 74
L + +
Sbjct: 259 DGLKMKLEHHHHH 271
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 205 bits (524), Expect = 1e-61
Identities = 46/211 (21%), Positives = 76/211 (36%), Gaps = 5/211 (2%)
Query: 60 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 119
LGV L +YD AL +E+A E P EA + G + A+ + +
Sbjct: 7 NPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLV 66
Query: 120 AVSPNFEIAKNNMAIALTDLG----TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGV 175
A +P + ++ A L + + +G + Q ++ K A N YA G+
Sbjct: 67 ARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGL 126
Query: 176 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 235
Y + + D A + A E + L +Y LD+A+ Y AL P
Sbjct: 127 VYALLGERDKAEASLKQALALEDT-PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL 185
Query: 236 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 266
++GK + AA +
Sbjct: 186 DLRVRYASALLLKGKAEEAARAAALEHHHHH 216
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 7e-46
Identities = 40/208 (19%), Positives = 68/208 (32%), Gaps = 26/208 (12%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+ + +AL +P L L + G ++ + P Y Y
Sbjct: 25 LTLFERALKENPQD-------PEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYM 77
Query: 63 NLGVVYSELM-----------QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 111
L Y L + AL + A P YA + G++Y G+ + A
Sbjct: 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKA 137
Query: 112 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 171
A ++ LA+ E ++ +A + G +++ +A Y KAL D
Sbjct: 138 EASLKQALALEDTPE-IRSALAELYLSM-------GRLDEALAQYAKALEQAPKDLDLRV 189
Query: 172 NLGVAYGEMLKFDMAIVFYELAFHFNPH 199
A K + A L H + H
Sbjct: 190 RYASALLLKGKAEEAARAAALEHHHHHH 217
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 4e-39
Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 11/146 (7%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 226
LGV + ++D A+ +E A NP EA L ++ A+E +
Sbjct: 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKT 64
Query: 227 ALSIKPNFSQSLNNLGVVYT-----------VQGKMDAAAEMIEKAIAANPTYAEAYNNL 275
++ P + L Y +G ++ A +++ A NP YA +
Sbjct: 65 LVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124
Query: 276 GVLYRDAGSISLAIDAYEQCLKIDPD 301
G++Y G A + +Q L ++
Sbjct: 125 GLVYALLGERDKAEASLKQALALEDT 150
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 2e-29
Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 11/120 (9%)
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 260
+ LGV D A+ ++ AL P ++L L G ++ A E +
Sbjct: 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKT 64
Query: 261 AIAANPTYAEAYNNLGVLYRDAGSISL-----------AIDAYEQCLKIDPDSRNAGQNR 309
+A P Y Y L Y + A+ + +++P R
Sbjct: 65 LVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 8e-18
Identities = 18/78 (23%), Positives = 29/78 (37%)
Query: 232 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 291
Q+ LGV G+ DAA + E+A+ NP EA L G ++ A++
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61
Query: 292 YEQCLKIDPDSRNAGQNR 309
+ + P
Sbjct: 62 GKTLVARTPRYLGGYMVL 79
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 211 bits (538), Expect = 2e-60
Identities = 50/327 (15%), Positives = 99/327 (30%), Gaps = 34/327 (10%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+ KAL P LAI L +Q+ I +A++++P
Sbjct: 158 KVCFEKALEKKPKNPEFTSGLAIASYRLDN----WPPSQNAIDPLRQAIRLNPDNQYLKV 213
Query: 63 NLGVVYSELMQ----YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 118
L + ++ + E+A + P + + Y+ + + + AI ++
Sbjct: 214 LLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKA 273
Query: 119 LAVSPNFEIAKNNMAIALTDLGTKV------------KLEGDINQGVAYYKKALYYNWHY 166
L PN + +V KL I VA+ KKA N +
Sbjct: 274 LEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNL 333
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC---NNLGVI-YKDRDNLDKAVE 222
L + +++ A +++ F G DKA+
Sbjct: 334 FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIH 393
Query: 223 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 282
+ + I + D ++ + ++ N +EA + L L
Sbjct: 394 HFIEGVKINQKSREKEKMK----------DKLQKIAKMRLSKNGADSEALHVLAFLQELN 443
Query: 283 GSISLAIDAYEQCLKIDPDSRNAGQNR 309
+ A + E+ L+ +A
Sbjct: 444 EKMQQADEDSERGLESGSLIPSASSWN 470
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 170 bits (432), Expect = 6e-46
Identities = 47/335 (14%), Positives = 90/335 (26%), Gaps = 52/335 (15%)
Query: 34 LKLAGNTQDGIQKYYEALKI--DPHYAPAYYNLGVVYSELMQYDTALGCYEKA------- 84
++ + D K + + A L + Q + AL C KA
Sbjct: 25 MEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQE 84
Query: 85 --ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK--------NNMAI 134
+ N +Y + G L ++ V F
Sbjct: 85 HADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGW 144
Query: 135 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY---GEMLKFDMAIVFYE 191
G + ++KAL + L +A AI
Sbjct: 145 TRLKCGGN-----QNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLR 199
Query: 192 LAFHFNPHCAEACNNLGVIY----KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 247
A NP L + ++ + + + + AL P + L + Y
Sbjct: 200 QAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR 259
Query: 248 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS-------------------ISLA 288
+ + D A E+++KA+ P A + +G YR I A
Sbjct: 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHA 319
Query: 289 IDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 323
+ ++ + + + LA + ++
Sbjct: 320 VAHLKKADEANDNLFRVCSI--LASLHALADQYEE 352
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 3e-38
Identities = 26/262 (9%), Positives = 68/262 (25%), Gaps = 45/262 (17%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+AL P VL + I+ +AL+ P+ A +
Sbjct: 233 EKLVEEALEKAPGV-------TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC 285
Query: 63 NLGVVYSELM-------------------QYDTALGCYEKAALERPMYAEAYCNMGVIYK 103
+G Y + A+ +KA + ++
Sbjct: 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHA 345
Query: 104 NRGDLESAIACYERCLAVSPNFEIAK---NNMAIALTDLGTKVKLEGDINQGVAYYKKAL 160
E A +++ + + ++ + ++ + +
Sbjct: 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQM------KCEDKAIHHFIEGV 399
Query: 161 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 220
N + + ++ ++ N +EA + L + + + + +A
Sbjct: 400 KINQKSREK-EKMKDKLQKI---------AKMRLSKNGADSEALHVLAFLQELNEKMQQA 449
Query: 221 VECYQMALSIKPNFSQSLNNLG 242
E + L + + G
Sbjct: 450 DEDSERGLESGSLIPSASSWNG 471
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 206 bits (526), Expect = 5e-59
Identities = 42/341 (12%), Positives = 99/341 (29%), Gaps = 45/341 (13%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
++ +H A+ DP I T G ++ + + +++ + A
Sbjct: 46 LSQFHAAVDGDPDN-------YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARL 98
Query: 63 NLGVVYSELMQYDTALGCYEKA---------------ALERPMYAEAYCNMGVIYKNRGD 107
G + + + D A ++K L + + + + GD
Sbjct: 99 QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD 158
Query: 108 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 167
+AIA ++ L V + A G+ + ++ K A
Sbjct: 159 YTAAIAFLDKILEVCVWDAELRELRAECFIKE-------GEPRKAISDLKAASKLKNDNT 211
Query: 168 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK------------DRD 215
+A Y + Y ++ ++++ + + + K
Sbjct: 212 EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDG 271
Query: 216 NLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 271
A Y+ + +P+ +S + ++ K A + + + P A
Sbjct: 272 RYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNA 331
Query: 272 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 312
+ Y AI YE + + + + + A
Sbjct: 332 LKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 182 bits (464), Expect = 2e-50
Identities = 41/288 (14%), Positives = 90/288 (31%), Gaps = 38/288 (13%)
Query: 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 89
LG L AG D + +++ A+ DP AYY V+ + + AL K +
Sbjct: 32 LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM 91
Query: 90 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 149
+ A G + +G L+ A +++ L +P+ K
Sbjct: 92 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEA------------------ 133
Query: 150 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 209
++ + + + + AI F + AE
Sbjct: 134 --------QSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAE 185
Query: 210 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 269
+ KA+ + A +K + +++ + +Y G + + + + + + +
Sbjct: 186 CFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK 245
Query: 270 EAYNNLGVLYR------------DAGSISLAIDAYEQCLKIDPDSRNA 305
+ + + + G + A YE +K +P
Sbjct: 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEY 293
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 181 bits (460), Expect = 6e-50
Identities = 46/337 (13%), Positives = 97/337 (28%), Gaps = 38/337 (11%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLT--------DLGTSLKLAGNTQDGIQKYYEALKID 54
+ K L ++PS E + ++ + +G+ I + L++
Sbjct: 114 EDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC 173
Query: 55 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 114
A + + + A+ + A+ + EA+ + +Y GD E +++
Sbjct: 174 VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSE 233
Query: 115 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG-----VAYYKKALYYN----WH 165
CL + + + + E I G + Y+ + +
Sbjct: 234 VRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEY 293
Query: 166 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 225
+ + + + K AI P A + Y + D+A++ Y+
Sbjct: 294 TVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE 353
Query: 226 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 285
A N Q L + + + N E
Sbjct: 354 TAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQE--------------- 398
Query: 286 SLAIDAY-EQCLKIDPDSRNAGQNRLLA---MNYINE 318
I AY + L+ PD+ + + A I
Sbjct: 399 --IIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAA 433
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 177 bits (452), Expect = 9e-49
Identities = 38/268 (14%), Positives = 79/268 (29%), Gaps = 33/268 (12%)
Query: 57 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 116
+ +++ GV Y ++ + E + +G G L A++ +
Sbjct: 2 HHHHHHSSGVDLGT-------ENLYFQSMAD----VEKHLELGKKLLAAGQLADALSQFH 50
Query: 117 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 176
+ P+ IA A + G + K + + A G
Sbjct: 51 AAVDGDPDNYIAYYRRATVFLAM-------GKSKAALPDLTKVIQLKMDFTAARLQRGHL 103
Query: 177 YGEMLKFDMAIVFYELAFHFNPHCAEACN---------------NLGVIYKDRDNLDKAV 221
+ K D A ++ NP E + + + A+
Sbjct: 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163
Query: 222 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 281
L + ++ + +G+ A ++ A EA+ + LY
Sbjct: 164 AFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQ 223
Query: 282 AGSISLAIDAYEQCLKIDPDSRNAGQNR 309
G L++ +CLK+D D + +
Sbjct: 224 LGDHELSLSEVRECLKLDQDHKRCFAHY 251
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 3e-36
Identities = 34/244 (13%), Positives = 67/244 (27%), Gaps = 33/244 (13%)
Query: 90 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 149
M+ + + GV ++A E + L G +
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMADVE-----------KHLELGKKLLAA-------GQL 42
Query: 150 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 209
++ + A+ + A Y + M K A+ A G
Sbjct: 43 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102
Query: 210 IYKDRDNLDKAVECYQMALSIKPNFS---------------QSLNNLGVVYTVQGKMDAA 254
+ + LD+A + ++ L P+ + Q L + + G AA
Sbjct: 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162
Query: 255 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 314
++K + AE + G AI + K+ D+ A
Sbjct: 163 IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY 222
Query: 315 YINE 318
+ +
Sbjct: 223 QLGD 226
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 4e-35
Identities = 42/306 (13%), Positives = 88/306 (28%), Gaps = 53/306 (17%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+A K L E A G + I A K+ A+Y
Sbjct: 163 IAFLDKILEVCVWDAELRELRAECFIKEG-------EPRKAISDLKAASKLKNDNTEAFY 215
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK------------NRGDLES 110
+ +Y +L ++ +L + + + + + K G
Sbjct: 216 KISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTD 275
Query: 111 AIACYERCLAVSPNFE----IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY 166
A + YE + P+ +K + + + + + L
Sbjct: 276 ATSKYESVMKTEPSIAEYTVRSKERICHCFSKDE-------KPVEAIRVCSEVLQMEPDN 328
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR------------ 214
+A+ + AY +D AI YE A N + + L +
Sbjct: 329 VNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKIL 388
Query: 215 -----DNLDKAVECY-QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 268
+ ++ Y ++AL P+ Q+ + AA K + ++P
Sbjct: 389 GVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAA-----KEVLSDPEM 443
Query: 269 AEAYNN 274
+ +++
Sbjct: 444 RKKFDD 449
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 1e-27
Identities = 27/168 (16%), Positives = 49/168 (29%), Gaps = 11/168 (6%)
Query: 166 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 225
+ ++ GV G + ++ E LG L A+ +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSM-----------ADVEKHLELGKKLLAAGQLADALSQFH 50
Query: 226 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 285
A+ P+ + V+ GK AA + K I + A G L G +
Sbjct: 51 AAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKL 110
Query: 286 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 333
A D +++ LK +P + + + G
Sbjct: 111 DEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD 158
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 201 bits (514), Expect = 8e-58
Identities = 65/327 (19%), Positives = 115/327 (35%), Gaps = 52/327 (15%)
Query: 23 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKI----DPHYAPAYYNLGVVYSELMQYDTAL 78
+ + L G L AG+ + G+ + A++ + Y LG Y L Y+ A+
Sbjct: 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAM 106
Query: 79 GCYEKAALE-------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF----EI 127
++ L R A++ N+G K G + A C ER L ++
Sbjct: 107 QYHKHD-LTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSE 165
Query: 128 AK--NNMAIALTDLG----------TKVKLEGDINQGVAYYKKAL------YYNWHYADA 169
+ N+ G ++ + + V +Y++ L A
Sbjct: 166 GRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRA 225
Query: 170 MYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKAVEC 223
NLG Y + F AI ++ F A +NLG + + A E
Sbjct: 226 CGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285
Query: 224 YQMALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA------IAANPTYAEA 271
Y+ L++ + +QS +LG YT+ + + A E + + A A
Sbjct: 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARA 345
Query: 272 YNNLGVLYRDAGSISLAIDAYEQCLKI 298
+LG + G A+ EQ L++
Sbjct: 346 CWSLGNAHSAIGGHERALKYAEQHLQL 372
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 187 bits (476), Expect = 2e-52
Identities = 58/354 (16%), Positives = 106/354 (29%), Gaps = 75/354 (21%)
Query: 38 GNTQDGIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE---- 87
G+ G + + G + ++ A ++
Sbjct: 22 GSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAA-IQAGTE 80
Query: 88 -RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE----IAK--NNMAIALTDLG 140
+ Y +G Y GD A+ ++ L ++ + AK N+ L +G
Sbjct: 81 DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG 140
Query: 141 TKVKLEGDINQGVAYYKKAL------YYNWHYADAMYNLGVAYGEM-------------- 180
++ ++ L A+YNLG Y
Sbjct: 141 -------RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGD 193
Query: 181 ---LKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI- 230
A+ FY+ AC NLG Y + A+E +Q L I
Sbjct: 194 DVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA 253
Query: 231 -----KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA------IAANPTYAEAYNNLGVLY 279
+ ++ +NLG + G+ + AAE ++ + A++ +LG Y
Sbjct: 254 REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTY 313
Query: 280 RDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 333
+ AI+ + + L I ++ G A + L AH G
Sbjct: 314 TLLHEFNTAIEYHNRHLAI---AQELGDRIGEARACWS------LGNAHSAIGG 358
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 4e-24
Identities = 28/198 (14%), Positives = 52/198 (26%), Gaps = 25/198 (12%)
Query: 172 NLGVAYGEMLKFDMAIVFYELAFHF------NPHCAEACNNLGVIYKDRDNLDKAVECYQ 225
V+ + ++ G + + V +Q
Sbjct: 13 AENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQ 72
Query: 226 MALSIK----PNFSQSLNNLGVVYTVQGKMDAAAEM------IEKAIAANPTYAEAYNNL 275
A+ S + LG Y G + A + + K++ A++ NL
Sbjct: 73 AAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132
Query: 276 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRF 335
G + G A E+ L + +R G N G+ + GK
Sbjct: 133 GNTLKVMGRFDEAAICCERHLTL---ARQLGDRLSEGRALYNLGN------VYHAKGKHL 183
Query: 336 MRLYSQYTSWDNTKDPER 353
+ D + R
Sbjct: 184 GQRNPGKFGDDVKEALTR 201
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 3e-16
Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 14/112 (12%)
Query: 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTA 77
++LG S G +D + Y L + A + Y+LG Y+ L +++TA
Sbjct: 263 RRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTA 322
Query: 78 LGCYEKAALE-------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 122
+ + + L R A A ++G + G E A+ E+ L ++
Sbjct: 323 IEYHNRH-LAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 1e-14
Identities = 19/141 (13%), Positives = 39/141 (27%), Gaps = 19/141 (13%)
Query: 203 ACNNLGVIYKDRDNLDKAVECYQMALSIK------PNFSQSLNNLGVVYTVQGKMDAAAE 256
+ + V + + + L G G A
Sbjct: 10 SASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVA 69
Query: 257 MIEKAIA----ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 312
+ AI T + Y+ LG Y G + A+ ++ L + +++ A
Sbjct: 70 FFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL---AKSMNDRLGEA 126
Query: 313 MNYINEGHDDKLFEAHRDWGK 333
+ N G+ + G+
Sbjct: 127 KSSGNLGN------TLKVMGR 141
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 8e-05
Identities = 6/78 (7%), Positives = 16/78 (20%), Gaps = 8/78 (10%)
Query: 236 QSLNNLGVVYTVQGKMDAA--------AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 287
SL+ + G + G +AG
Sbjct: 7 SSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRA 66
Query: 288 AIDAYEQCLKIDPDSRNA 305
+ ++ ++ +
Sbjct: 67 GVAFFQAAIQAGTEDLRT 84
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 192 bits (491), Expect = 3e-55
Identities = 70/333 (21%), Positives = 115/333 (34%), Gaps = 55/333 (16%)
Query: 19 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID----PHYAPAYYNLGVVYSELMQY 74
+A CL L G L +G+ + G+ + A+++ + Y LG Y L Y
Sbjct: 2 SASCLE--LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY 59
Query: 75 DTALGCYEKA------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-- 126
AL + ++ A+A N+G K G+ + AI C +R L +S
Sbjct: 60 AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK 119
Query: 127 --IAK--NNMAIALTDLGTKVKLEGDINQGVAY------YKKAL-YYN------------ 163
A+ N+ G G + G + A+ Y
Sbjct: 120 VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDR 179
Query: 164 WHYADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNL 217
A NLG + + F A++ +E F A +NLG Y
Sbjct: 180 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 239
Query: 218 DKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA------IAAN 265
+ A E Y+ L + + +QS +LG YT+ + A + K +
Sbjct: 240 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299
Query: 266 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 298
A +LG Y G+ A+ E+ L+I
Sbjct: 300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 3e-40
Identities = 49/283 (17%), Positives = 92/283 (32%), Gaps = 42/283 (14%)
Query: 58 APAYYNLGVVYSELMQYDTALGCYEKAALE-----RPMYAEAYCNMGVIYKNRGDLESAI 112
G + + +E A ++ + Y +G Y D A+
Sbjct: 5 CLELALEGERLCKSGDCRAGVSFFEAA-VQVGTEDLKTLSAIYSQLGNAYFYLHDYAKAL 63
Query: 113 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL------YYNWHY 166
+ L ++ + A A +LG +K+ G+ ++ + ++ L
Sbjct: 64 EYHHHDLTLARTIG-DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 122
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 226
A A+YNLG Y K + R+ L AV+ Y+
Sbjct: 123 ARALYNLGNVYHAKGKSFGCPGPQ--------------DTGEFPEDVRNALQAAVDLYEE 168
Query: 227 ALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA------ANPTYAEAYNN 274
LS+ + ++ NLG + + G A E+ + AY+N
Sbjct: 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN 228
Query: 275 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 317
LG Y G A + Y++ L + +R + A + +
Sbjct: 229 LGNAYIFLGEFETASEYYKKTLLL---ARQLKDRAVEAQSCYS 268
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 6e-33
Identities = 57/252 (22%), Positives = 87/252 (34%), Gaps = 45/252 (17%)
Query: 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKID------PHYAPAYYNLGVVYSEL------ 71
A +LG +LK+ GN + I L I A A YNLG VY
Sbjct: 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC 142
Query: 72 --------------MQYDTALGCYEKA------ALERPMYAEAYCNMGVIYKNRGDLESA 111
A+ YE+ +R A+ N+G + G+ A
Sbjct: 143 PGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 202
Query: 112 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL------YYNWH 165
+ +E+ L ++ F K A ++LG G+ YYKK L
Sbjct: 203 VIAHEQRLLIAKEFG-DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 261
Query: 166 YADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDK 219
A + Y+LG Y + ++ AI ++ AC +LG Y N D+
Sbjct: 262 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 321
Query: 220 AVECYQMALSIK 231
A+ + L I
Sbjct: 322 AMHFAEKHLEIS 333
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 185 bits (473), Expect = 1e-54
Identities = 38/227 (16%), Positives = 78/227 (34%), Gaps = 44/227 (19%)
Query: 54 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 113
D Y + G+ +++ +Y A+ E+ + ++G+ Y G ++
Sbjct: 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTE 63
Query: 114 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL 173
ER LA +P+ L
Sbjct: 64 LLERSLADAPD-----------------------------------------NVKVATVL 82
Query: 174 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 233
G+ Y ++ K+D+A+ NP LGV + D+A++ +++AL ++PN
Sbjct: 83 GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142
Query: 234 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 280
+ + Y G+ + A +KA + + L ++ R
Sbjct: 143 EGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE---LALVPR 186
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 179 bits (456), Expect = 2e-52
Identities = 31/183 (16%), Positives = 59/183 (32%), Gaps = 7/183 (3%)
Query: 123 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 182
++ + I+ G +Q V ++ + D +LG+AY +
Sbjct: 5 DIRQVYYRDKGISHAKAG-------RYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGA 57
Query: 183 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 242
D E + P + LG+ Y D AV P LG
Sbjct: 58 VDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLG 117
Query: 243 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302
V G+ D A + + A+ P + + + Y G A+ +++ ++D +
Sbjct: 118 VALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177
Query: 303 RNA 305
Sbjct: 178 SVE 180
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 168 bits (429), Expect = 1e-48
Identities = 31/216 (14%), Positives = 64/216 (29%), Gaps = 44/216 (20%)
Query: 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 89
G S AG + + D +LG+ Y + D E++ + P
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73
Query: 90 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 149
+ +G+ Y + A+ + +P
Sbjct: 74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI------------------------- 108
Query: 150 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 209
+ + LGVA + +FD AI +++A P+ + +
Sbjct: 109 ----------------NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAF 152
Query: 210 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 245
Y+ ++A+ ++ A + S L +V
Sbjct: 153 SYEQMGRHEEALPHFKKANELDEGASV---ELALVP 185
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 5e-43
Identities = 29/145 (20%), Positives = 60/145 (41%)
Query: 165 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 224
+ G+++ + ++ A++ E + + + +LG+ Y +D+ E
Sbjct: 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELL 65
Query: 225 QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 284
+ +L+ P+ + LG+ Y K D A ++ K ANP LGV + G
Sbjct: 66 ERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR 125
Query: 285 ISLAIDAYEQCLKIDPDSRNAGQNR 309
AID+++ L + P+ +
Sbjct: 126 FDEAIDSFKIALGLRPNEGKVHRAI 150
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 3e-32
Identities = 19/109 (17%), Positives = 40/109 (36%)
Query: 197 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 256
+ + G+ + +AV + +LG+ Y G +D E
Sbjct: 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTE 63
Query: 257 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 305
++E+++A P + LG+ Y LA+ + + +P + N
Sbjct: 64 LLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNV 112
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 1e-29
Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 7/126 (5%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
++L+ P V T LG + + + + +P +
Sbjct: 62 TELLERSLADAPDN-------VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRF 114
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 122
LGV L ++D A+ ++ A RP + + + Y+ G E A+ +++ +
Sbjct: 115 RLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174
Query: 123 PNFEIA 128
+
Sbjct: 175 EGASVE 180
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 50.1 bits (121), Expect = 4e-07
Identities = 9/48 (18%), Positives = 17/48 (35%)
Query: 262 IAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 309
+ + Y + G+ + AG S A+ EQ D + +
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHL 48
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 189 bits (483), Expect = 2e-53
Identities = 72/347 (20%), Positives = 119/347 (34%), Gaps = 56/347 (16%)
Query: 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKI----DPHYAPAYYNLGVVYSELMQYDTALG 79
+ L G L +G+ + G+ + A+++ + Y LG Y L Y AL
Sbjct: 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 68
Query: 80 CYEKA------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE----IAK 129
+ ++ A+A N+G K G+ + AI C +R L +S A+
Sbjct: 69 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 128
Query: 130 --NNMAIALTDLGTKVKLEGDINQG-------------VAYYKKAL------YYNWHYAD 168
N+ G G + G V +Y++ L
Sbjct: 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGR 188
Query: 169 AMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKAVE 222
A NLG + + F A++ +E F A +NLG Y + A E
Sbjct: 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248
Query: 223 CYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA------IAANPTYAE 270
Y+ L + + +QS +LG YT+ + A + K +
Sbjct: 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGR 308
Query: 271 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 317
A +LG Y G+ A+ E+ L+I SR G +N
Sbjct: 309 ACWSLGNAYTALGNHDQAMHFAEKHLEI---SREVGDKSGELTARLN 352
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 174 bits (442), Expect = 8e-48
Identities = 68/360 (18%), Positives = 125/360 (34%), Gaps = 69/360 (19%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPH 56
V+ + A+ + L+ + + LG + + ++ ++ L +
Sbjct: 29 VSFFEAAVQV---GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85
Query: 57 YAPAYYNLGVVYSELMQYDTALGCYEKAALE-------RPMYAEAYCNMGVIYKNRGD-- 107
A A NLG L +D A+ C ++ L+ + A A N+G +Y +G
Sbjct: 86 EAKASGNLGNTLKVLGNFDEAIVCCQRH-LDISRELNDKVGEARALYNLGNVYHAKGKSF 144
Query: 108 ------------------LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 149
L++A+ YE L++ + A +LG L G+
Sbjct: 145 GCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG-DRAAQGRAFGNLGNTHYLLGNF 203
Query: 150 NQGVAYYKKAL------YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA------FHFN 197
V +++ L A NLG AY + +F+ A +Y+
Sbjct: 204 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 263
Query: 198 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKM 251
A++C +LG Y + +KA++ + L+I + ++ +LG YT G
Sbjct: 264 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323
Query: 252 DAAAEMIEKAIA-------------ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 298
D A EK + A ++ LG+ Y SI + L
Sbjct: 324 DQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNG 383
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 3e-29
Identities = 51/279 (18%), Positives = 83/279 (29%), Gaps = 72/279 (25%)
Query: 87 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 146
G GD + ++ +E + V ++ + LG
Sbjct: 4 SMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE---DLKTLSAIYSQLGNAYFYL 60
Query: 147 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 206
D + + Y+ L +A + A+A N
Sbjct: 61 HDYAKALEYHHHDL-----------------------TLARTIGD-----QLGEAKASGN 92
Query: 207 LGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEM--- 257
LG K N D+A+ C Q L I K +++L NLG VY +GK
Sbjct: 93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDV 152
Query: 258 -----------------------IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 294
+ A+ A+ NLG + G+ A+ A+EQ
Sbjct: 153 GEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 212
Query: 295 CLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 333
L I ++ G Y N G+ A+ G+
Sbjct: 213 RLLI---AKEFGDKAAERRAYSNLGN------AYIFLGE 242
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 177 bits (452), Expect = 2e-51
Identities = 38/226 (16%), Positives = 65/226 (28%), Gaps = 10/226 (4%)
Query: 55 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 114
+ L + Y Y A E A P A+ IY+ + A
Sbjct: 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQES 64
Query: 115 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL--YYNWHYADAMYN 172
+ + L++ P+ NN L + +AY+ KAL A N
Sbjct: 65 FRQALSIKPDSAEINNNYGWFLCG------RLNRPAESMAYFDKALADPTYPTPYIANLN 118
Query: 173 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 232
G+ + +F +A + + + P A L L A ++ S
Sbjct: 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178
Query: 233 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 278
LG + + + A E + + VL
Sbjct: 179 VLQADDLLLG--WKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 2e-50
Identities = 39/233 (16%), Positives = 80/233 (34%), Gaps = 12/233 (5%)
Query: 85 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 144
A + + + + Y D A A E L P E+A A L
Sbjct: 1 AEKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLK---- 56
Query: 145 LEGDINQGVAYYKKALYYNWHYADAMYNLGVA-YGEMLKFDMAIVFYE--LAFHFNPHCA 201
++ +++AL A+ N G G + + ++ +++ LA P
Sbjct: 57 ---VNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPY 113
Query: 202 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 261
A N G+ + A + +L+ +P F + L + G++ A +K
Sbjct: 114 IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKY 173
Query: 262 IAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN 314
+ LG ++ A ++ A AYE ++ + + + + +
Sbjct: 174 QSRVEVLQADDLLLG--WKIAKALGNAQAAYEYEAQLQANFPYSEELQTVLTG 224
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 2e-25
Identities = 26/180 (14%), Positives = 58/180 (32%), Gaps = 19/180 (10%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKL-AGNTQDGIQKYYEALK--IDPHYAP 59
S+ +ALS P A + + G L + + + +AL P
Sbjct: 62 QESFRQALSIKPDS-------AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYI 114
Query: 60 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 119
A N G+ ++ Q+ A +++ +P + A+ + G L A +++
Sbjct: 115 ANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQ 174
Query: 120 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 179
+ + + K+ + A Y+ ++ + V G+
Sbjct: 175 SRVEVLQADDLLLGW---------KIAKALGNAQAAYEYEAQLQANFPYSEELQTVLTGQ 225
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 192 bits (490), Expect = 3e-51
Identities = 32/311 (10%), Positives = 81/311 (26%), Gaps = 15/311 (4%)
Query: 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 61
L+ +A P + + G + Q + +A + P A
Sbjct: 347 LLPVLCQAHGLTPDQ-------VVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAI 399
Query: 62 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 121
+ G L L +A P A + + ++ + + +
Sbjct: 400 ASNGGKQ-ALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGL 458
Query: 122 SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 181
+P +A + L + Q + +A A+ + +
Sbjct: 459 TPAQVVAIASHDGGKQALE-------TVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALA 511
Query: 182 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 241
+ A P A + G + + + + + A + P+ ++ +
Sbjct: 512 TVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN 571
Query: 242 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301
G + ++ +A A + + ++ + Q + P
Sbjct: 572 GGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPA 631
Query: 302 SRNAGQNRLLA 312
A +
Sbjct: 632 QVVAIASHDGG 642
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 187 bits (475), Expect = 2e-49
Identities = 32/311 (10%), Positives = 81/311 (26%), Gaps = 14/311 (4%)
Query: 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 61
L+ +A P + + + Q + +A + P A
Sbjct: 482 LLPVLCQAHGLTPDQ-------VVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAI 534
Query: 62 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 121
+ G L L +A P A + G + ++ + + +
Sbjct: 535 ASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGL 594
Query: 122 SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 181
+ +A + L T +L + +A A+ + +
Sbjct: 595 TQVQVVAIASNIGGKQALETVQRL-------LPVLCQAHGLTPAQVVAIASHDGGKQALE 647
Query: 182 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 241
+ A P A + G + + + + + A + ++ +
Sbjct: 648 TVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASN 707
Query: 242 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301
+ ++ +A P A + G + ++ + Q + P
Sbjct: 708 NGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPA 767
Query: 302 SRNAGQNRLLA 312
A + +
Sbjct: 768 QVVAIASNIGG 778
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 182 bits (463), Expect = 9e-48
Identities = 31/309 (10%), Positives = 77/309 (24%), Gaps = 15/309 (4%)
Query: 4 ASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN 63
L D + + G + L + P A +
Sbjct: 145 ELRGPPLQLDTGQ-------LVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIAS 197
Query: 64 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 123
L L +A P A + + ++ + + + P
Sbjct: 198 NNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPP 257
Query: 124 NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 183
+ +A + L + + + +A A+ + G +
Sbjct: 258 DQVVAIASNIGGKQALE-------TVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETV 310
Query: 184 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 243
+ A P A + + + + + + A + P+ ++ + G
Sbjct: 311 QRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG 370
Query: 244 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 303
+ ++ +A P A + G + ++ + Q + PD
Sbjct: 371 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG-KQALETVQRLLPVLCQAHGLTPDQV 429
Query: 304 NAGQNRLLA 312
A +
Sbjct: 430 VAIASHDGG 438
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 179 bits (454), Expect = 1e-46
Identities = 29/304 (9%), Positives = 79/304 (25%), Gaps = 14/304 (4%)
Query: 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 61
L+ +A P + + G + Q + +A + P A
Sbjct: 516 LLPVLCQAHGLTPDQ-------VVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAI 568
Query: 62 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 121
+ G L L +A + A + + ++ + + +
Sbjct: 569 ASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGL 628
Query: 122 SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 181
+P +A + L + + + +A A+ + G +
Sbjct: 629 TPAQVVAIASHDGGKQALE-------TVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE 681
Query: 182 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 241
+ A A + + + + + + A + P+ ++ +
Sbjct: 682 TVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN 741
Query: 242 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301
G + ++ +A P A + + ++ + Q +
Sbjct: 742 GGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLA 801
Query: 302 SRNA 305
A
Sbjct: 802 QVVA 805
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 167 bits (424), Expect = 7e-43
Identities = 31/308 (10%), Positives = 83/308 (26%), Gaps = 9/308 (2%)
Query: 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 61
+ +Y ++A P + V + L D + L++D
Sbjct: 104 VAVTYQHIITALPEATHED--IVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKI 161
Query: 62 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 121
G V + + + P A + + ++ + + +
Sbjct: 162 AKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGL 221
Query: 122 SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 181
+P +A + L + + + +A A+ + +
Sbjct: 222 TPAQVVAIASHDGGKQALE-------TMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALE 274
Query: 182 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 241
+ A P A + G + + + + + A + P+ ++ +
Sbjct: 275 TVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASH 334
Query: 242 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301
+ ++ +A P A + G + ++ + Q + PD
Sbjct: 335 DGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD 394
Query: 302 SRNAGQNR 309
A +
Sbjct: 395 QVVAIASN 402
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 5e-42
Identities = 28/311 (9%), Positives = 78/311 (25%), Gaps = 14/311 (4%)
Query: 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 61
L+ +A P A + G + Q + +A + A
Sbjct: 550 LLPVLCQAHGLTPDQVVA-------IASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAI 602
Query: 62 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 121
+ L L +A P A + + ++ + + +
Sbjct: 603 ASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGL 662
Query: 122 SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 181
+P+ +A + L + + + +A A+ + +
Sbjct: 663 TPDQVVAIASNGGGKQALE-------TVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALE 715
Query: 182 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 241
+ A P A + G + + + + + A + P ++ +
Sbjct: 716 TVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASN 775
Query: 242 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301
+ ++ + A + + ++ + Q + D
Sbjct: 776 IGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQD 835
Query: 302 SRNAGQNRLLA 312
A + +
Sbjct: 836 QVVAIASNIGG 846
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 148 bits (374), Expect = 8e-37
Identities = 28/300 (9%), Positives = 73/300 (24%), Gaps = 14/300 (4%)
Query: 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 61
L+ +A A L T Q + +A + P A
Sbjct: 584 LLPVLCQAHGLTQVQVVAIASNIGGKQALET-------VQRLLPVLCQAHGLTPAQVVAI 636
Query: 62 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 121
+ L L +A P A + G + ++ + + +
Sbjct: 637 ASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGL 696
Query: 122 SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 181
+ +A + L + + + +A A+ + G +
Sbjct: 697 TQEQVVAIASNNGGKQALE-------TVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE 749
Query: 182 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 241
+ A P A + + + + + + + ++ +
Sbjct: 750 TVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASN 809
Query: 242 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301
+ ++ +A A + + ++ + Q + PD
Sbjct: 810 IGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPD 869
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 147 bits (372), Expect = 2e-36
Identities = 28/310 (9%), Positives = 72/310 (23%), Gaps = 12/310 (3%)
Query: 8 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 67
K S + A + + Y + P
Sbjct: 69 KVRSTVAQHHEALVGHGFTHAHIVALSQHPAALGTVAVTYQHIITALPEATHEDIVGVGK 128
Query: 68 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV-----S 122
+ AL P+ + + + + A+ L +
Sbjct: 129 QWSGARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLT 188
Query: 123 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 182
P +A + L + + + +A A+ + +
Sbjct: 189 PAQVVAIASNNGGKQALE-------TVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALET 241
Query: 183 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 242
+ A P A + + + + + + A + P+ ++ + G
Sbjct: 242 MQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHG 301
Query: 243 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302
+ ++ +A P A + + ++ + Q + PD
Sbjct: 302 GGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 361
Query: 303 RNAGQNRLLA 312
A +
Sbjct: 362 VVAIASNGGG 371
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 2e-34
Identities = 24/309 (7%), Positives = 76/309 (24%), Gaps = 14/309 (4%)
Query: 1 MLVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 60
L+ +A P+ + + + Q + +A + P A
Sbjct: 617 RLLPVLCQAHGLTPAQ-------VVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVA 669
Query: 61 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 120
+ G L L +A A + + ++ + +
Sbjct: 670 IASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHG 729
Query: 121 VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 180
++P+ +A + L + + + +A A+ + +
Sbjct: 730 LTPDQVVAIASNGGGKQALE-------TVQRLLPVLCQAHGLTPAQVVAIASNIGGKQAL 782
Query: 181 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN 240
+ A + + + + + + A + + ++ +
Sbjct: 783 ETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIAS 842
Query: 241 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 300
+ ++ + P A + + ++ + Q +
Sbjct: 843 NIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTL 902
Query: 301 DSRNAGQNR 309
D A +
Sbjct: 903 DQVVAIASN 911
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 107 bits (267), Expect = 8e-24
Identities = 37/337 (10%), Positives = 86/337 (25%), Gaps = 45/337 (13%)
Query: 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 61
L+ +A P + + G + Q + +A + P A
Sbjct: 720 LLPVLCQAHGLTPDQ-------VVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAI 772
Query: 62 YNLGVVYSELMQYDT---------------------------ALGCYEKAALERPMYAEA 94
+ L AL ++
Sbjct: 773 ASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGL 832
Query: 95 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 154
+ V + + A+ +R L V + +A+ + + + +
Sbjct: 833 TQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLP 892
Query: 155 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 214
+ A+ + G + + P A + +
Sbjct: 893 VLCQDHGLTLDQVVAIASNGG-KQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQAL 951
Query: 215 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-NPTYAEAYN 273
+ + + + + PN ++ + G ++ + A + A+AA + A
Sbjct: 952 ETVQRLLPVLCQDHGLTPNQVVAIASNGGKQALE-SIVAQLSRPDPALAALTNDHLVALA 1010
Query: 274 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 310
LG A+DA ++ L P+ R+
Sbjct: 1011 CLGGRP--------AMDAVKKGLPHAPELIRRVNRRI 1039
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 169 bits (432), Expect = 1e-49
Identities = 56/136 (41%), Positives = 79/136 (58%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 226
A+A YNLG AY + +D AI +Y+ A +P AEA NLG Y + + D+A+E YQ
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 227 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 286
AL + P +++ NLG Y QG D A E +KA+ +P AEA+ NLG Y G
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 287 LAIDAYEQCLKIDPDS 302
AI+ Y++ L++DP S
Sbjct: 121 EAIEYYQKALELDPRS 136
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 1e-41
Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 7/142 (4%)
Query: 92 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 151
AEA+ N+G Y +GD + AI Y++ L + P A N+ A G D ++
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG-------DYDE 53
Query: 152 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 211
+ YY+KAL + A+A YNLG AY + +D AI +Y+ A +P AEA NLG Y
Sbjct: 54 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 113
Query: 212 KDRDNLDKAVECYQMALSIKPN 233
+ + D+A+E YQ AL + P
Sbjct: 114 YKQGDYDEAIEYYQKALELDPR 135
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 129 bits (328), Expect = 2e-35
Identities = 46/134 (34%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 89
LG + G+ + I+ Y +AL++DP A A+YNLG Y + YD A+ Y+KA P
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 90 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 149
AEA+ N+G Y +GD + AI Y++ L + P A N+ A GD
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ-------GDY 119
Query: 150 NQGVAYYKKALYYN 163
++ + YY+KAL +
Sbjct: 120 DEAIEYYQKALELD 133
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 6e-30
Identities = 43/122 (35%), Positives = 63/122 (51%), Gaps = 7/122 (5%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+ Y KAL DP A +LG + G+ + I+ Y +AL++DP A A+Y
Sbjct: 21 IEYYQKALELDPRS-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY 73
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 122
NLG Y + YD A+ Y+KA P AEA+ N+G Y +GD + AI Y++ L +
Sbjct: 74 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133
Query: 123 PN 124
P
Sbjct: 134 PR 135
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 80.1 bits (199), Expect = 5e-18
Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 34/105 (32%)
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 260
AEA NLG Y + + D+A+E YQ AL + P
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--------------------------- 33
Query: 261 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 305
AEA+ NLG Y G AI+ Y++ L++DP S A
Sbjct: 34 -------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 48.2 bits (116), Expect = 7e-07
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 269 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 309
AEA+ NLG Y G AI+ Y++ L++DP S A N
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 41
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 3e-48
Identities = 52/291 (17%), Positives = 94/291 (32%), Gaps = 16/291 (5%)
Query: 34 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT-ALGCYEKAALERPMYA 92
+ + +Q+ E L A A G + Y A KA P
Sbjct: 78 QDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELV 137
Query: 93 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE--GDIN 150
EA+ +G +Y +GD+ SA C+ L N + N+++ L L T E +
Sbjct: 138 EAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKV-SLQNLSMVLRQLQTDSGDEHSRHVM 196
Query: 151 QGVAYYKKALYYNWHYADAMYNLGVAYGEML--------KFDMAIVFYELAFHFN---PH 199
V K A+ + + Y LG AY + A+ Y A +
Sbjct: 197 DSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256
Query: 200 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 259
+ N ++K ++ +A+E + A ++ P + + + ++ + E
Sbjct: 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316
Query: 260 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR-NAGQNR 309
K L + + L++ P S G N
Sbjct: 317 KTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKPLSTLQPGVNS 367
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 163 bits (413), Expect = 2e-43
Identities = 40/332 (12%), Positives = 91/332 (27%), Gaps = 39/332 (11%)
Query: 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM-------QYDTALG 79
+ + +QK + + +Y+ V + + L
Sbjct: 30 MGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQ 89
Query: 80 CYEKAALERPMYAEAYCNMGVIYKNRGD-LESAIACYERCLAVSPNFEIAKNNMAIALTD 138
E+ + A+A G D A + + + P A N +
Sbjct: 90 QMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWK 149
Query: 139 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM---------LKFDMAIVF 189
GD+ + AL + + ++ NL + ++ ++
Sbjct: 150 K-------GDVTSAHTCFSGALTHCKNK-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ 201
Query: 190 YELAFHFNPHCAEACNNLGVIY--------KDRDNLDKAVECYQMALSIK---PNFSQSL 238
+LA + + LG Y ++ +A+ Y A + +
Sbjct: 202 AKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLH 261
Query: 239 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 298
N ++ + A E +A A +P + E L ++ +++ K
Sbjct: 262 LNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG---KT 318
Query: 299 DPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 330
P + L + G + +
Sbjct: 319 KPKKLQSMLGSLRPAHLGPCGDGRYQSASGQK 350
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 9e-31
Identities = 30/251 (11%), Positives = 63/251 (25%), Gaps = 58/251 (23%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
KA+ ++P A+
Sbjct: 123 EVLLSKAVK-----------------------------------------LEPELVEAWN 141
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG---------DLESAIA 113
LG VY + +A C+ AL + N+ ++ + + ++
Sbjct: 142 QLGEVYWKKGDVTSAHTCFSG-ALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVR 200
Query: 114 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE-GDINQGVAYYKKALYYNW---HYADA 169
+ + + + + A L Q ++ Y +A + D
Sbjct: 201 QAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDL 260
Query: 170 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 229
N + + A+ + A +P E + + L +E
Sbjct: 261 HLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG---K 317
Query: 230 IKPNFSQSLNN 240
KP QS+
Sbjct: 318 TKPKKLQSMLG 328
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 3e-27
Identities = 33/258 (12%), Positives = 78/258 (30%), Gaps = 27/258 (10%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLG--TSLKLAGNTQDGIQKYYEALKIDPHYAPA 60
+ AL+ + + + L++VL L + + + + D +++ A+++D +
Sbjct: 157 HTCFSGALTHCKNKV-SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRS 215
Query: 61 YYNLGVVY--------SELMQYDTALGCYEKAA---LERPMYAEAYCNMGVIYKNRGDLE 109
+Y LG Y AL Y +A + + + N ++K
Sbjct: 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYG 275
Query: 110 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK------ALYYN 163
A+ + + A+ P + + L L + + K
Sbjct: 276 EALEGFSQAAALDPAWPEPQQREQQLLEFL-------SRLTSLLESKGKTKPKKLQSMLG 328
Query: 164 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 223
+ G + + + P LG + +K
Sbjct: 329 SLRPAHLGPCGDGRYQSASGQKMTLELKPLSTLQPGVNSGTVVLGKVVFSLTTEEKVPFT 388
Query: 224 YQMALSIKPNFSQSLNNL 241
+ + S P ++ + N+
Sbjct: 389 FGLVDSDGPCYAVMVYNV 406
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 157 bits (400), Expect = 2e-44
Identities = 25/213 (11%), Positives = 63/213 (29%), Gaps = 26/213 (12%)
Query: 91 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 150
+ G A++ + + +A++ +
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMY--------------------- 41
Query: 151 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 210
Y+ + + L +AY + +D A +FY+ P+ + +
Sbjct: 42 ----YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEM 97
Query: 211 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM-DAAAEMIEKAIAANPTYA 269
R A+ Y+ L ++ + + LG Y + + E K +++
Sbjct: 98 QVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ 157
Query: 270 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302
A G+ A ++ ++ + P +
Sbjct: 158 YARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 5e-38
Identities = 28/213 (13%), Positives = 54/213 (25%), Gaps = 25/213 (11%)
Query: 57 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAY----------------CNMGV 100
E Q A+ + + E Y + +
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62
Query: 101 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 160
YK + + A Y+ L +PN A G + Y+K L
Sbjct: 63 AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCR-------GQEKDALRMYEKIL 115
Query: 161 YYNWHYADAMYNLGVAYGEML-KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 219
A LG Y + + A G+ +K
Sbjct: 116 QLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEK 175
Query: 220 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 252
A Q + P+ +++ L + ++ +++
Sbjct: 176 ARNSLQKVILRFPS-TEAQKTLDKILRIEKEVN 207
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 2e-36
Identities = 29/209 (13%), Positives = 63/209 (30%), Gaps = 23/209 (11%)
Query: 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY----------------NLGVVYSE 70
+ ++ AG + + + + ++ YY L + Y +
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66
Query: 71 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 130
YD A Y++ + P + + RG + A+ YE+ L + + A
Sbjct: 67 NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANI 126
Query: 131 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 190
+ + + K L A Y G++ +++ A
Sbjct: 127 FLGNYYYLTA------EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSL 180
Query: 191 ELAFHFNPHCAEACNNLGVIYKDRDNLDK 219
+ P EA L I + +++
Sbjct: 181 QKVILRFPS-TEAQKTLDKILRIEKEVNR 208
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 2e-32
Identities = 31/175 (17%), Positives = 49/175 (28%), Gaps = 19/175 (10%)
Query: 166 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA----------------CNNLGV 209
D M A E + A+ ++ N E L +
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62
Query: 210 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 269
YK N DKA Y+ L PN L + +G+ A M EK +
Sbjct: 63 AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122
Query: 270 EAYNNLGVLYRDAG-SISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 323
A LG Y ++ + L + A ++ + +K
Sbjct: 123 AANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYR--DGLSKLFTTRYEK 175
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 4e-40
Identities = 53/316 (16%), Positives = 94/316 (29%), Gaps = 70/316 (22%)
Query: 44 IQKYYEALKI------------DPHYAPAYYNLGVVYSELMQYDTALGCYEKA--ALER- 88
+ ++ P +NL + Y+ +Y+ A+ ++A LE+
Sbjct: 1 MHHHHHHSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT 60
Query: 89 -----PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS--------PNFEIAKNNMAIA 135
P A + ++Y+++ + A LA+ P NN+A+
Sbjct: 61 SGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVL 120
Query: 136 LTDLGTKVKLEGDINQGVAYYKKAL------YYNWH--YADAMYNLGVAYGEMLKFDMAI 187
G + K+AL H A + NL + K++
Sbjct: 121 YGKRG-------KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE 173
Query: 188 VFYELAF----------HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK------ 231
+Y+ A P+ A+ NNL Y + +A Y+ L+
Sbjct: 174 YYYQRALEIYQTKLGPDD--PNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFG 231
Query: 232 ---PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA------ANPTYAEAYNNLGVLYRDA 282
+ +GK E +PT NLG LYR
Sbjct: 232 SVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQ 291
Query: 283 GSISLAIDAYEQCLKI 298
G A E ++
Sbjct: 292 GKFEAAETLEEAAMRS 307
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 1e-34
Identities = 55/287 (19%), Positives = 89/287 (31%), Gaps = 54/287 (18%)
Query: 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYD 75
L +L G + + +AL+ P A L +VY + +Y
Sbjct: 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK 86
Query: 76 TALGCYEKA-ALER-------PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS----- 122
A A A+ P A N+ V+Y RG + A +R L +
Sbjct: 87 DAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 146
Query: 123 ---PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL------YYNWH--YADAMY 171
P+ NN+A+ + G + YY++AL A
Sbjct: 147 KDHPDVAKQLNNLALLCQNQG-------KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKN 199
Query: 172 NLGVAYGEMLKFDMAIVFYELAF---------HFNPHCAEACNNLGVIYKDRDNLDKAVE 222
NL Y + KF A Y+ + + + +
Sbjct: 200 NLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS 259
Query: 223 CYQMALSIK------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 263
+ K P + +L NLG +Y QGK +AA + E A+
Sbjct: 260 FGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 4e-28
Identities = 47/247 (19%), Positives = 76/247 (30%), Gaps = 46/247 (18%)
Query: 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYD 75
A +L L + +D +AL I P A NL V+Y + +Y
Sbjct: 69 ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK 128
Query: 76 TALGCYEKA------AL--ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS----- 122
A ++A L + P A+ N+ ++ +N+G E Y+R L +
Sbjct: 129 EAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188
Query: 123 ---PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW---------HYADAM 170
PN KNN+A G Q YK+ L
Sbjct: 189 PDDPNVAKTKNNLASCYLKQG-------KFKQAETLYKEILTRAHEREFGSVDDENKPIW 241
Query: 171 YNLGVAYGEMLKFDMAIVFYELAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECY 224
+ K F E + P NLG +Y+ + + A
Sbjct: 242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLE 301
Query: 225 QMALSIK 231
+ A+ +
Sbjct: 302 EAAMRSR 308
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 5e-40
Identities = 49/118 (41%), Positives = 68/118 (57%)
Query: 166 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 225
A+A YNLG AY + +D AI +Y+ A +P+ AEA NLG Y + + D+A+E YQ
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 226 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 283
AL + PN +++ NLG Y QG D A E +KA+ +P AEA NLG + G
Sbjct: 68 KALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 7e-36
Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 41/166 (24%)
Query: 84 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 143
A++ AEA+ N+G Y +GD + AI Y++ L + PN
Sbjct: 1 GAMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------------------- 41
Query: 144 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 203
A+A YNLG AY + +D AI +Y+ A +P+ AEA
Sbjct: 42 ----------------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79
Query: 204 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 249
NLG Y + + D+A+E YQ AL + PN +++ NLG QG
Sbjct: 80 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 4e-35
Identities = 46/129 (35%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
Query: 53 IDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 111
+DP A A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y +GD + A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 112 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 171
I Y++ L + PN A N+ A GD ++ + YY+KAL + + A+A
Sbjct: 63 IEYYQKALELDPNNAEAWYNLGNAYYKQ-------GDYDEAIEYYQKALELDPNNAEAKQ 115
Query: 172 NLGVAYGEM 180
NLG A +
Sbjct: 116 NLGNAKQKQ 124
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 127 bits (323), Expect = 8e-35
Identities = 45/109 (41%), Positives = 64/109 (58%)
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 260
AEA NLG Y + + D+A+E YQ AL + PN +++ NLG Y QG D A E +K
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 261 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 309
A+ +P AEA+ NLG Y G AI+ Y++ L++DP++ A QN
Sbjct: 69 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 117
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 125 bits (318), Expect = 3e-34
Identities = 42/111 (37%), Positives = 62/111 (55%)
Query: 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 89
LG + G+ + I+ Y +AL++DP+ A A+YNLG Y + YD A+ Y+KA P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 90 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 140
AEA+ N+G Y +GD + AI Y++ L + PN AK N+ A G
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 86.3 bits (215), Expect = 2e-20
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 229 SIKP-NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 287
++ P N +++ NLG Y QG D A E +KA+ +P AEA+ NLG Y G
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 288 AIDAYEQCLKIDPDSRNA 305
AI+ Y++ L++DP++ A
Sbjct: 62 AIEYYQKALELDPNNAEA 79
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 5e-37
Identities = 34/296 (11%), Positives = 83/296 (28%), Gaps = 26/296 (8%)
Query: 29 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY--NLGVVYSELMQYDTALGCYEKA-- 84
+ G + + ++ K Y G+ + +Y A+G Y +A
Sbjct: 70 EPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEK 129
Query: 85 ----ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 140
+ AE + + Y + ++ + L + N + +L +
Sbjct: 130 ELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189
Query: 141 TKVKLEGDINQGVAYYKKAL------YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 194
++ + + + AL + A ++ N+ +Y MA+ ++ A
Sbjct: 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAA 249
Query: 195 -----HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-----PNFSQSLNNLGVV 244
+ L KA + + L + + L V
Sbjct: 250 KVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAV 309
Query: 245 YTVQGKMDAAAEMIE--KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 298
Y +++ + + + ++ + A Y + LK
Sbjct: 310 YKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 5e-33
Identities = 49/304 (16%), Positives = 93/304 (30%), Gaps = 24/304 (7%)
Query: 44 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC--NMGVI 101
+ YY + Y G Y L E + + Y G+
Sbjct: 51 LLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMY 110
Query: 102 YKNRGDLESAIACYERCLAVSPN----FEIAK--NNMAIALTDLGTKVKLEGDINQGVAY 155
++ + AI Y P E A+ +A A + I Q +
Sbjct: 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDI 170
Query: 156 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGV 209
Y+ Y+ +++ + Y + +D A+ E A + A + N+
Sbjct: 171 YQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIAN 230
Query: 210 IYKDRDNLDKAVECYQMALSIK-----PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA- 263
Y + AVE +Q A + + L L G+ A + IE+ +
Sbjct: 231 SYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290
Query: 264 ----ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 319
++ Y E + L +Y++ D K + + R A + +
Sbjct: 291 ITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSC 350
Query: 320 HDDK 323
H ++
Sbjct: 351 HFEQ 354
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 2e-29
Identities = 34/247 (13%), Positives = 76/247 (30%), Gaps = 25/247 (10%)
Query: 6 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-------DPHYA 58
Y +A P E A + + T + +AL I
Sbjct: 124 YREAEKELPFVSDDIE-KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182
Query: 59 PAYYNLGVVYSELMQYDTALGCYEKA------ALERPMYAEAYCNMGVIYKNRGDLESAI 112
+ + + Y + YD AL E A A + N+ Y GD + A+
Sbjct: 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV 242
Query: 113 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL--------YYNW 164
+++ VS E + + L L + G + + ++ L +
Sbjct: 243 EHFQKAAKVSR--EKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYK 300
Query: 165 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 224
+ + + K + ++E + + + + +++ + ++A Y
Sbjct: 301 ELFLFLQAVYKETVDERKIHDLLSYFE-KKNLHAYIEACARSAAAVFESSCHFEQAAAFY 359
Query: 225 QMALSIK 231
+ L +
Sbjct: 360 RKVLKAQ 366
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 7e-23
Identities = 45/318 (14%), Positives = 88/318 (27%), Gaps = 66/318 (20%)
Query: 73 QYDTALGCYEKA------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 126
A + E Y M ++ D Y V+ E
Sbjct: 27 SVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86
Query: 127 IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 186
+ + + + YY + G+ + ++ A
Sbjct: 87 TIE--------------TPQKKLTGLLKYY----SL--------FFRGMYEFDQKEYVEA 120
Query: 187 IVFYELAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-------KPN 233
I +Y A AE + Y ++ AL I
Sbjct: 121 IGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR 180
Query: 234 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIA------ANPTYAEAYNNLGVLYRDAGSISL 287
QSL + Y D A +E A+ + A + N+ Y +G +
Sbjct: 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQM 240
Query: 288 AIDAYEQCLKIDPDSRNAGQNRLL---------------AMNYINEGHDDKLFEAHRDWG 332
A++ +++ K+ + ++L A +I EG D +H+ +
Sbjct: 241 AVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYK 300
Query: 333 KRFMRLYSQYTSWDNTKD 350
+ F+ L + Y + +
Sbjct: 301 ELFLFLQAVYKETVDERK 318
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 141 bits (356), Expect = 2e-36
Identities = 39/323 (12%), Positives = 101/323 (31%), Gaps = 36/323 (11%)
Query: 1 MLVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 60
++ ++ L + L+DL + G+ +YY
Sbjct: 57 LMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYY-----------F 105
Query: 61 YYNLGVVYSELMQYDTALGCYEKA------ALERPMYAEAYCNMGVIYKNRGDLESAIAC 114
+ G+ + +Y +A+ ++KA +R AE + M Y ++
Sbjct: 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDY 165
Query: 115 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL------YYNWHYAD 168
+ + E + + T +++++KA
Sbjct: 166 ARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGR 225
Query: 169 AMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKAVE 222
+YN+G+ +++ AI +++ A + P +A + I+ +DKA E
Sbjct: 226 TLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHE 285
Query: 223 CYQMALSIK-----PNFSQSLNNLGVVYTVQGKMDAAAEMIE--KAIAANPTYAEAYNNL 275
+ ++ + L +Y +A + ++ + ++
Sbjct: 286 YHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDV 345
Query: 276 GVLYRDAGSISLAIDAYEQCLKI 298
Y + + A + + ++
Sbjct: 346 AKYYHERKNFQKASAYFLKVEQV 368
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 8e-29
Identities = 39/247 (15%), Positives = 77/247 (31%), Gaps = 24/247 (9%)
Query: 6 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-------DPHYA 58
+ KA S K E A + S T + +A +I +
Sbjct: 126 FKKAESKLIFVKDRIE-KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184
Query: 59 PAYYNLGVVYSELMQYDTALGCYEKA------ALERPMYAEAYCNMGVIYKNRGDLESAI 112
+ + +L QY+ A+ ++KA + + N+G+ ++ E AI
Sbjct: 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAI 244
Query: 113 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL-----YYNWHYA 167
++R +AV ++ A + G I++ Y+ K + + Y
Sbjct: 245 PYFKRAIAVFEESN-ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYL 303
Query: 168 DAMYNLGVAY---GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 224
L Y + F E + ++ Y +R N KA +
Sbjct: 304 SEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYF 362
Query: 225 QMALSIK 231
++
Sbjct: 363 LKVEQVR 369
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 9e-35
Identities = 48/288 (16%), Positives = 88/288 (30%), Gaps = 58/288 (20%)
Query: 60 AYYNLGVVYSELMQYDTALGCYEKA--ALER------PMYAEAYCNMGVIYKNRGDLESA 111
+ ++ S L+ +A+ ++A LE+ P A + ++Y+++ + A
Sbjct: 3 SSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEA 62
Query: 112 IACYERCLAVS--------PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL--- 160
LA+ P NN+A+ G + K+AL
Sbjct: 63 AHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG-------KYKEAEPLCKRALEIR 115
Query: 161 ---YYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAF----------HFNPHCAEACN 205
+H A + NL + K + +Y A P+ A+ N
Sbjct: 116 EKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD--PNVAKTKN 173
Query: 206 NLGVIYKDRDNLDKAVECYQMALSIK---------PNFSQSLNNLGVVYTVQGKMDAAAE 256
NL Y + A Y+ L+ + + + K +A
Sbjct: 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP 233
Query: 257 MIEKAIA------ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 298
E +PT +LG LYR G + A + +
Sbjct: 234 YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 4e-34
Identities = 53/288 (18%), Positives = 90/288 (31%), Gaps = 62/288 (21%)
Query: 30 LGTSLKLA------GNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYD 75
+G+S + +AL+ P A L +VY + +Y
Sbjct: 1 MGSSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK 60
Query: 76 TALGCYEKAALER---------PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS---- 122
A A L P A N+ V+Y RG + A +R L +
Sbjct: 61 EAAHLLNDA-LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119
Query: 123 ----PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--------HYADAM 170
P+ NN+A+ + G + YY++AL + A
Sbjct: 120 GKFHPDVAKQLNNLALLCQNQG-------KAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172
Query: 171 YNLGVAYGEMLKFDMAIVFYELAFHF---------NPHCAEACNNLGVIYKDRDNLDKAV 221
NL Y + K+ A Y+ N + + +D +
Sbjct: 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSA 232
Query: 222 ECYQMALSIK------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 263
+ K P + +L +LG +Y QGK++AA + + A
Sbjct: 233 PYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 3e-27
Identities = 45/248 (18%), Positives = 74/248 (29%), Gaps = 48/248 (19%)
Query: 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYD 75
A +L L + ++ +AL I P A NL V+Y + +Y
Sbjct: 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK 102
Query: 76 TALGCYEKAALER---------PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS---- 122
A ++A LE P A+ N+ ++ +N+G E Y R L +
Sbjct: 103 EAEPLCKRA-LEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRL 161
Query: 123 ----PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW---------HYADA 169
PN KNN+A G YK+ L
Sbjct: 162 GPDDPNVAKTKNNLASCYLKQG-------KYQDAETLYKEILTRAHEKEFGSVNGDNKPI 214
Query: 170 MYNLGVAYGEMLKFDMAIVFYELAFHFN------PHCAEACNNLGVIYKDRDNLDKAVEC 223
+ K + + E + P +LG +Y+ + L+ A
Sbjct: 215 WMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTL 274
Query: 224 YQMALSIK 231
A +
Sbjct: 275 EDCASRNR 282
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 1e-32
Identities = 36/224 (16%), Positives = 69/224 (30%), Gaps = 46/224 (20%)
Query: 58 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 117
A + +N GV+ ++ + AL + ++ N+G +Y ++ A + R
Sbjct: 6 AISLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTR 62
Query: 118 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL-YYNWHYADAMYNLGVA 176
+ + +A + + + K+AL + LG+
Sbjct: 63 SINRDKHLAVAYFQRGMLYYQT-------EKYDLAIKDLKEALIQLRGNQLIDYKILGLQ 115
Query: 177 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 236
F E N+ +Y ++ KA E +A S+K
Sbjct: 116 -------------------FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR- 155
Query: 237 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 280
K+D A E + K P +G L+R
Sbjct: 156 -----------HSKIDKAMECVWKQKLYEPVVI----PVGRLFR 184
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 5e-30
Identities = 32/199 (16%), Positives = 59/199 (29%), Gaps = 41/199 (20%)
Query: 38 GNTQDGIQKYYEAL----KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 93
G + + AL + ++ +N+G +Y+ L A + ++ A
Sbjct: 13 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV 72
Query: 94 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGV 153
AY G++Y + AI + L NQ +
Sbjct: 73 AYFQRGMLYYQTEKYDLAIKDLKEALIQLRG-------------------------NQLI 107
Query: 154 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 213
Y L + + +YN+ Y + ++ A LA
Sbjct: 108 DYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE------------PR 155
Query: 214 RDNLDKAVECYQMALSIKP 232
+DKA+EC +P
Sbjct: 156 HSKIDKAMECVWKQKLYEP 174
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 3e-28
Identities = 24/176 (13%), Positives = 63/176 (35%), Gaps = 21/176 (11%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 226
A +++N GV + + A+ + + C N+G +Y N+ +A + +
Sbjct: 6 AISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTR 62
Query: 227 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT----------------YAE 270
+++ + + + G++Y K D A + +++A+ E
Sbjct: 63 SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACE 122
Query: 271 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE 326
N+ +Y A + + + R++ ++ AM + + +
Sbjct: 123 VLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK--AMECVWKQKLYEPVV 176
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 95.6 bits (238), Expect = 2e-22
Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 11/128 (8%)
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 260
A + N GV+ D+ + A++ + +++ S+ N+G +YT+ M A + +
Sbjct: 6 AISLWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTR 62
Query: 261 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 320
+I + A AY G+LY LAI ++ L ++ ++Y G
Sbjct: 63 SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ--------LIDYKILGL 114
Query: 321 DDKLFEAH 328
KLF
Sbjct: 115 QFKLFACE 122
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 1e-20
Identities = 22/146 (15%), Positives = 56/146 (38%), Gaps = 19/146 (13%)
Query: 6 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 65
+ AL A + + + + ++G + N + + + ++ D H A AY+ G
Sbjct: 22 WKGALDA---FSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRG 78
Query: 66 VVYSELMQYDTALGCYEKAALE----------------RPMYAEAYCNMGVIYKNRGDLE 109
++Y + +YD A+ ++A ++ + E N+ +Y + + +
Sbjct: 79 MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWK 138
Query: 110 SAIACYERCLAVSPNFEIAKNNMAIA 135
A ++ +K + A+
Sbjct: 139 KAEEQLALATSMKSEPRHSKIDKAME 164
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 3e-29
Identities = 35/83 (42%), Positives = 47/83 (56%)
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 260
AEA NLG Y + + D+A+E YQ AL + PN +++ NLG Y QG D A E +K
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 261 AIAANPTYAEAYNNLGVLYRDAG 283
A+ +P AEA NLG + G
Sbjct: 69 ALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 4e-28
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 53 IDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 111
+DP A A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y +GD + A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 112 IACYERCLAVSPNFEIAKNNMAIALTDLG 140
I Y++ L + PN AK N+ A G
Sbjct: 63 IEYYQKALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 4e-26
Identities = 35/84 (41%), Positives = 50/84 (59%)
Query: 166 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 225
A+A YNLG AY + +D AI +Y+ A +P+ AEA NLG Y + + D+A+E YQ
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 226 MALSIKPNFSQSLNNLGVVYTVQG 249
AL + PN +++ NLG QG
Sbjct: 68 KALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 94.0 bits (235), Expect = 2e-23
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 84 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 143
A++ AEA+ N+G Y +GD + AI Y++ L + PN A N+ A G
Sbjct: 1 GAMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG--- 57
Query: 144 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 179
+ I YY+KAL + + A+A NLG A +
Sbjct: 58 DYDEAI----EYYQKALELDPNNAEAKQNLGNAKQK 89
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 87.5 bits (218), Expect = 4e-21
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 89
LG + G+ + I+ Y +AL++DP+ A A+YNLG Y + YD A+ Y+KA P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 90 MYAEAYCNMGVIYKNRG 106
AEA N+G + +G
Sbjct: 75 NNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 87.1 bits (217), Expect = 6e-21
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 229 SIKP-NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL 287
++ P N +++ NLG Y QG D A E +KA+ +P AEA+ NLG Y G
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 288 AIDAYEQCLKIDPDSRNAGQNR 309
AI+ Y++ L++DP++ A QN
Sbjct: 62 AIEYYQKALELDPNNAEAKQNL 83
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 2e-28
Identities = 29/219 (13%), Positives = 64/219 (29%), Gaps = 44/219 (20%)
Query: 46 KYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-------RPMYAEAYCNM 98
+ L + A + LG VY+ + ++D A ++ + A +
Sbjct: 14 QAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQAL-QQQAQKSGDHTAEHRALHQV 72
Query: 99 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKK 158
G++ + G+ ++A C+ + + + ++ T GD+ Y+K
Sbjct: 73 GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132
Query: 159 ALYYNWHYADAMY-NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 217
+L A A LG + + NL
Sbjct: 133 SL--------VYAQQADDQVAI---------------------ACAFRGLGDLAQQEKNL 163
Query: 218 DKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGK 250
+A + + A I ++ + L +
Sbjct: 164 LEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 3e-24
Identities = 27/170 (15%), Positives = 54/170 (31%), Gaps = 22/170 (12%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKA 220
+ A + LG Y M +FD A ++ + A + +G++ + N D A
Sbjct: 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAA 85
Query: 221 VECYQMALSI-------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------NPT 267
C+ + S + + V G + A + EK++
Sbjct: 86 RRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVA 145
Query: 268 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 317
A A+ LG L + ++ A + + I + +
Sbjct: 146 IACAFRGLGDLAQQEKNLLEAQQHWLRARDI---FAELEDSEAVNELMTR 192
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 3e-21
Identities = 23/146 (15%), Positives = 46/146 (31%), Gaps = 22/146 (15%)
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAA 254
+ A LG +Y D D+A +Q ++L+ +G+V + G DAA
Sbjct: 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAA 85
Query: 255 AEMIEKAIAA-------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 307
+ + + + G ++ A YE+ L ++ A
Sbjct: 86 RRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY---AQQADD 142
Query: 308 NRLLAMNYINEGHDDKLFEAHRDWGK 333
+A + G + +
Sbjct: 143 QVAIACAFRGLG------DLAQQEKN 162
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 3e-20
Identities = 23/173 (13%), Positives = 52/173 (30%), Gaps = 20/173 (11%)
Query: 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTA 77
+ LG + + + A + +G+V +D A
Sbjct: 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAA 85
Query: 78 LGCYEKA-------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 130
C+ + + + + + + GDL A YE+ L + + +
Sbjct: 86 RRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD-DQV 144
Query: 131 NMAIALTDLGTKVKLEGDINQGVAYYKKAL------YYNWHYADAMYNLGVAY 177
+A A LG + E ++ + ++ +A + + M L
Sbjct: 145 AIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLE 197
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 1e-11
Identities = 17/128 (13%), Positives = 37/128 (28%), Gaps = 22/128 (17%)
Query: 219 KAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------NP 266
+A + S + LG VY + D A + +
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63
Query: 267 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL-LAMNYINEGHDDKLF 325
A + +G++ R AG+ A + + ++ + ++ L + N
Sbjct: 64 AEHRALHQVGMVERMAGNWDAARRCFLEEREL---LASLPEDPLAASANAYEVA------ 114
Query: 326 EAHRDWGK 333
+G
Sbjct: 115 TVALHFGD 122
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 2e-27
Identities = 34/150 (22%), Positives = 55/150 (36%), Gaps = 18/150 (12%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKA 220
A NLG + + F A++ +E F A +NLG Y + A
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68
Query: 221 VECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA------IAANPTY 268
E Y+ L + + +QS +LG YT+ + A + K +
Sbjct: 69 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 128
Query: 269 AEAYNNLGVLYRDAGSISLAIDAYEQCLKI 298
A +LG Y G+ A+ E+ L+I
Sbjct: 129 GRACWSLGNAYTALGNHDQAMHFAEKHLEI 158
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-26
Identities = 35/186 (18%), Positives = 61/186 (32%), Gaps = 47/186 (25%)
Query: 58 APAYYNLGVVYSELMQYDTALGCYEKA------ALERPMYAEAYCNMGVIYKNRGDLESA 111
A+ NLG + L + A+ +E+ ++ AY N+G Y G+ E+A
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68
Query: 112 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 171
Y++ L + + L A + Y
Sbjct: 69 SEYYKKTLLL-----------------------------------ARQLKDRAVEAQSCY 93
Query: 172 NLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 225
+LG Y + ++ AI ++ AC +LG Y N D+A+ +
Sbjct: 94 SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153
Query: 226 MALSIK 231
L I
Sbjct: 154 KHLEIS 159
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 102 bits (258), Expect = 1e-25
Identities = 36/189 (19%), Positives = 64/189 (33%), Gaps = 47/189 (24%)
Query: 87 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 146
R A+ N+G + G+ A+ +E+ L ++
Sbjct: 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA------------------------ 39
Query: 147 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHC 200
K A NLG AY + +F+ A +Y+
Sbjct: 40 -----------KEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAA 254
A++C +LG Y + +KA++ + L+I + ++ +LG YT G D A
Sbjct: 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 148
Query: 255 AEMIEKAIA 263
EK +
Sbjct: 149 MHFAEKHLE 157
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 2e-21
Identities = 37/149 (24%), Positives = 63/149 (42%), Gaps = 13/149 (8%)
Query: 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTA 77
+LG + L GN +D + + + L I AY NLG Y L +++TA
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68
Query: 78 LGCYEKA-ALERPMY-----AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 131
Y+K L R + A++ ++G Y D E AI + + LA++ + +
Sbjct: 69 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK-DRIG 127
Query: 132 MAIALTDLGTKVKLEGDINQGVAYYKKAL 160
A LG G+ +Q + + +K L
Sbjct: 128 EGRACWSLGNAYTALGNHDQAMHFAEKHL 156
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 5e-16
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 14/112 (12%)
Query: 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKID------PHYAPAYYNLGVVYSELMQYDTA 77
I ++LG + G + + Y + L + A + Y+LG Y+ L Y+ A
Sbjct: 49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 108
Query: 78 LGCYEKAALE-------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 122
+ + K L R A ++G Y G+ + A+ E+ L +S
Sbjct: 109 IDYHLK-HLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 4e-27
Identities = 18/104 (17%), Positives = 38/104 (36%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 226
+ G++ ++ A + +E P EA +LG+ + + A+
Sbjct: 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNH 76
Query: 227 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 270
A + P L V +T + +AA + + + P Y +
Sbjct: 77 ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 94.4 bits (235), Expect = 3e-23
Identities = 18/97 (18%), Positives = 37/97 (38%)
Query: 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 89
G S+ N + + + +P A+ +LG+ +E + A+ A + P
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82
Query: 90 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 126
+ + V + N + +A+A L P +E
Sbjct: 83 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 1e-22
Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 1/106 (0%)
Query: 197 NPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 255
NP+ E G+ NL +A ++ +P ++ +LG+ K A
Sbjct: 12 NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAI 71
Query: 256 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301
+ A +P + L V + + + + A+ + L P
Sbjct: 72 IALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 90.2 bits (224), Expect = 1e-21
Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 7/111 (6%)
Query: 58 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 117
G+ +L A +E + P EA+ ++G+ AI
Sbjct: 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNH 76
Query: 118 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 168
+ P +A++ T+ E + N +A + L Y
Sbjct: 77 ARMLDPKDIAVHAALAVSHTN-------EHNANAALASLRAWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 2e-21
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 2/92 (2%)
Query: 240 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 299
G+ + AA E P EA+ +LG+ + LAI A +D
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Query: 300 PDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 331
P LA+++ NE + + + R W
Sbjct: 82 PKDIAVHAA--LAVSHTNEHNANAALASLRAW 111
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 9e-20
Identities = 17/98 (17%), Positives = 36/98 (36%)
Query: 139 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 198
G + ++ + ++ +A +LG+ E K +AI+ A +P
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82
Query: 199 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ 236
L V + + N + A+ + L +P + Q
Sbjct: 83 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 1e-13
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 7/91 (7%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
++ +P + A LG + I A +DP +
Sbjct: 37 ALAFEAVCQKEPEREEA-------WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHA 89
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAE 93
L V ++ + AL L +P Y +
Sbjct: 90 ALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 113 bits (283), Expect = 4e-27
Identities = 33/271 (12%), Positives = 77/271 (28%), Gaps = 18/271 (6%)
Query: 89 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 148
+ + Y + + E A + ++ + + L L D
Sbjct: 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK------D 147
Query: 149 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 208
+++ + Y + ++ V + + F + + A +
Sbjct: 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ 207
Query: 209 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV------YTVQGKMDAAAEMIEKAI 262
+ ++ D ++ L + N V Y + ++ + + I
Sbjct: 208 WVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI 267
Query: 263 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDD 322
P A+N L + +D G +S + Q L + P + L Y + +
Sbjct: 268 KLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQ 326
Query: 323 KLFEAHRDWGKRFMRLYSQYTSWDNTKDPER 353
+ D + + L KD R
Sbjct: 327 --CDNKEDILNKALEL---CEILAKEKDTIR 352
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-23
Identities = 31/254 (12%), Positives = 78/254 (30%), Gaps = 19/254 (7%)
Query: 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ-YDTALGCYEKAALER 88
L+ ++ + +A++++ ++ V+ L + + E+
Sbjct: 103 FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 162
Query: 89 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 148
P + + + V+ + D + L A + + + + +
Sbjct: 163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFK---LWDNE 219
Query: 149 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF------DMAIVFYELAFHFNPHCAE 202
+ Y + L + + + + + PH
Sbjct: 220 L----QYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES 275
Query: 203 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS--LNNLGVVYT--VQGKMDAAAEMI 258
A N L I +DR L K L ++P+ S + L +Y ++ + D +++
Sbjct: 276 AWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDIL 334
Query: 259 EKAIAANPTYAEAY 272
KA+ A+
Sbjct: 335 NKALELCEILAKEK 348
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 91.7 bits (227), Expect = 6e-20
Identities = 23/187 (12%), Positives = 57/187 (30%), Gaps = 1/187 (0%)
Query: 159 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD-RDNL 217
+ Y+ + D + + A A N + V+ K + +L
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148
Query: 218 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 277
+ + + +P Q ++ V+ E I + + A+ +
Sbjct: 149 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 208
Query: 278 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMR 337
+ ++ + +Q LK D + + R ++ +D + E + ++
Sbjct: 209 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 268
Query: 338 LYSQYTS 344
L S
Sbjct: 269 LVPHNES 275
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 89.4 bits (221), Expect = 4e-19
Identities = 26/233 (11%), Positives = 61/233 (26%), Gaps = 19/233 (8%)
Query: 5 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 64
A+ + + ++L L L + ++ P +++
Sbjct: 119 LTRDAIELNAANYTVWHFRRVLLKSLQKDLHEE------MNYITAIIEEQPKNYQVWHHR 172
Query: 65 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124
V+ L L + A+ + + + ++ + ++ L
Sbjct: 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR 232
Query: 125 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 184
N +++ + + V Y + + H A L +
Sbjct: 233 NNSVWNQRYFVISNTT-GYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLS 290
Query: 185 MAIVFYELAFHFNP--HCAEACNNLGVIYKDR---------DNLDKAVECYQM 226
P L IY+D D L+KA+E ++
Sbjct: 291 KYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEI 343
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 109 bits (272), Expect = 2e-26
Identities = 35/269 (13%), Positives = 78/269 (28%), Gaps = 17/269 (6%)
Query: 38 GNTQDGIQKYYEALKIDPHYA-PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 96
G+ Q I + P L Y +Y L + ++ +A
Sbjct: 13 GSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAP---ELQAVR 69
Query: 97 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 156
+ ++ +A +R ++ S + L + + + + +
Sbjct: 70 MFAEYLASHSRRDAIVAELDREMSRSVD-----VTNTTFLLMAASIYFYDQNPDAALR-- 122
Query: 157 KKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI--YKDR 214
+ + M ++ + D+A + + +
Sbjct: 123 ---TLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGG 179
Query: 215 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 274
+ L A +Q LN + QG+ +AA ++++A+ + + E N
Sbjct: 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239
Query: 275 LGVLYRDAGSISLAIDAYEQCLK-IDPDS 302
L VL + G + Y LK
Sbjct: 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 80.2 bits (197), Expect = 1e-16
Identities = 29/263 (11%), Positives = 63/263 (23%), Gaps = 22/263 (8%)
Query: 73 QYDTALGCYEKAALERPMYA-EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 131
Y + ++ P E + Y + + + +
Sbjct: 14 SYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----------SSAP 63
Query: 132 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL--GVAYGEMLKFDMAIVF 189
A+ + + VA + + + + + L Y D A+
Sbjct: 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRT 123
Query: 190 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 249
E I D LD A + + + + + V G
Sbjct: 124 LH-----QGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAG 178
Query: 250 --KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 307
K+ A + ++ N + G A ++ L D
Sbjct: 179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238
Query: 308 NRLLAMNYINEGHDDKLFEAHRD 330
N L + + G ++ +
Sbjct: 239 N--LVVLSQHLGKPPEVTNRYLS 259
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 8e-05
Identities = 11/85 (12%), Positives = 20/85 (23%), Gaps = 7/85 (8%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+ + ++L G + EAL D +
Sbjct: 186 YYIFQEMADKCSPT-------LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238
Query: 63 NLGVVYSELMQYDTALGCYEKAALE 87
NL V+ L + Y +
Sbjct: 239 NLVVLSQHLGKPPEVTNRYLSQLKD 263
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 3e-26
Identities = 49/266 (18%), Positives = 79/266 (29%), Gaps = 47/266 (17%)
Query: 92 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 151
A Y V +KN LE A Y + N + A A G +K + +
Sbjct: 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRS-LFHAAKAFEQAGMMLKDLQRMPE 94
Query: 152 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 211
V Y +KA Y E D A A A + G +
Sbjct: 95 AVQYIEKASVM--------------YVENGTPDTA--------------AMALDRAGKLM 126
Query: 212 KDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 265
+ D L KAV YQ A ++ ++ + + Q K D AA ++K +
Sbjct: 127 EPLD-LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY 185
Query: 266 ------PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID--PDSRNAGQNRLLAMNYIN 317
PT + ++ A + I S + L +
Sbjct: 186 KEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLL-QAYD 244
Query: 318 EGHDDKLFEAHRDWGKRFMRLYSQYT 343
E +++L R + + Y
Sbjct: 245 EQDEEQLLRVCRS--PLVTYMDNDYA 268
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 89.2 bits (221), Expect = 2e-19
Identities = 46/273 (16%), Positives = 76/273 (27%), Gaps = 63/273 (23%)
Query: 10 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYAPAYYN 63
+ P Y AA + K A + Y + + H A A+
Sbjct: 26 MKWKPDYDSAASEY----AKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQ 81
Query: 64 LGVVYSELMQYDTALGCYEKAA-----LERPMYAEAYCNMGVIYKNRGDLESAIACYERC 118
G++ +L + A+ EKA+ P A + DL A+ Y++
Sbjct: 82 AGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQA 141
Query: 119 LAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 178
AV N E A+ +
Sbjct: 142 AAVFENEE-----------------------------------RLRQAAELIGKASRLLV 166
Query: 179 EMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 232
KFD A + P C + C ++ R + A +C + + SI P
Sbjct: 167 RQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI-P 225
Query: 233 NFSQS-----LNNLGVVYTVQGKMDAAAEMIEK 260
FS S L +L Y + + +
Sbjct: 226 GFSGSEDCAALEDLLQAYD-EQDEEQLLRVCRS 257
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 2e-25
Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 9/113 (7%)
Query: 53 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 112
+ YY GV+ + Y ++ +EKA P ++ + G N E A+
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
Query: 113 ACYERCLAVSPNFEIAK--NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 163
CY + V + A AL + E + +
Sbjct: 61 DCYNYVINVIEDEYNKDVWAAKADALRYIE---GKEVEA----EIAEARAKLE 106
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 2e-25
Identities = 14/107 (13%), Positives = 34/107 (31%), Gaps = 2/107 (1%)
Query: 197 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 256
E GV+ D N ++++ ++ A+ + P S+ G + + A +
Sbjct: 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD 61
Query: 257 MIEKAIA--ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301
I + + + R + + E K++
Sbjct: 62 CYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 92.9 bits (232), Expect = 9e-23
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 2/98 (2%)
Query: 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA-ALER 88
G AGN + I + +A+++DP + + G L +Y+ A+ CY +
Sbjct: 12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71
Query: 89 -PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 125
+ + + E E + +
Sbjct: 72 DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 92.5 bits (231), Expect = 1e-22
Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 2/107 (1%)
Query: 165 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 224
+ Y GV + + +I +E A +P ++ G + + ++AV+CY
Sbjct: 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCY 63
Query: 225 QMALSIKPNFSQSL--NNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 269
+++ + + AE+ E +
Sbjct: 64 NYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 91.0 bits (227), Expect = 5e-22
Identities = 13/148 (8%), Positives = 38/148 (25%), Gaps = 43/148 (29%)
Query: 89 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 148
E Y GV+ + G+ +I +E+ + + P
Sbjct: 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE------------------------ 38
Query: 149 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE--LAFHFNPHCAEACNN 206
+ G A + +++ A+ Y + + + +
Sbjct: 39 -----------------ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81
Query: 207 LGVIYKDRDNLDKAVECYQMALSIKPNF 234
+ + + E + ++ +
Sbjct: 82 KADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 8e-16
Identities = 14/76 (18%), Positives = 28/76 (36%)
Query: 230 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 289
+ + GV+ G + ++ EKAI +P ++ + G + A+
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
Query: 290 DAYEQCLKIDPDSRNA 305
D Y + + D N
Sbjct: 61 DCYNYVINVIEDEYNK 76
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 2e-06
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 265 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 309
E Y GVL DAG+ + +ID +E+ +++DP+ +
Sbjct: 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMK 46
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 97.5 bits (243), Expect = 5e-24
Identities = 21/132 (15%), Positives = 43/132 (32%), Gaps = 4/132 (3%)
Query: 150 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 209
+ G + + +Y LG + K+D A ++ + + A LG
Sbjct: 2 SDG-GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGA 60
Query: 210 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA---ANP 266
+ ++A++ Y + N + + + G +D A A A A P
Sbjct: 61 CRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120
Query: 267 TYAEAYNNLGVL 278
+ G +
Sbjct: 121 AHEALAARAGAM 132
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 8e-24
Identities = 24/142 (16%), Positives = 41/142 (28%), Gaps = 10/142 (7%)
Query: 4 ASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN 63
+ L LG + AG D + + +D + A +
Sbjct: 5 GTLAMLRGLSEDT-------LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLG 57
Query: 64 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 123
LG L Y+ AL Y AL + + GDL+ A + + A++
Sbjct: 58 LGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117
Query: 124 N---FEIAKNNMAIALTDLGTK 142
E L + +
Sbjct: 118 AQPAHEALAARAGAMLEAVTAR 139
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 95.6 bits (238), Expect = 2e-23
Identities = 13/127 (10%), Positives = 29/127 (22%)
Query: 190 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 249
+ + E LG D A + +Q + ++ LG G
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 250 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 309
+ A + + + + G + A + +
Sbjct: 67 LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126
Query: 310 LLAMNYI 316
A +
Sbjct: 127 ARAGAML 133
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 1e-18
Identities = 11/124 (8%), Positives = 31/124 (25%), Gaps = 7/124 (5%)
Query: 113 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 172
+S + + G + ++ + + A
Sbjct: 5 GTLAMLRGLSEDTLEQLYALGFNQYQAG-------KWDDAQKIFQALCMLDHYDARYFLG 57
Query: 173 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 232
LG + ++ A+ Y + + + + +LD A + A ++
Sbjct: 58 LGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117
Query: 233 NFSQ 236
Sbjct: 118 AQPA 121
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 7e-24
Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 2/102 (1%)
Query: 41 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 100
Q ++ L + LG Y+E Q+D AL A P Y+ A+ +G
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61
Query: 101 IYKNRGDLESAIACYERCLAVSPNF--EIAKNNMAIALTDLG 140
+ +GD A +E LA + + + + + L L
Sbjct: 62 TLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLA 103
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 5e-23
Identities = 20/89 (22%), Positives = 34/89 (38%)
Query: 217 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 276
+ E + L+ + LG Y + DAA + A+ +PTY+ A+ LG
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60
Query: 277 VLYRDAGSISLAIDAYEQCLKIDPDSRNA 305
+ G + A A+E L +
Sbjct: 61 KTLQGQGDRAGARQAWESGLAAAQSRGDQ 89
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 2e-21
Identities = 22/111 (19%), Positives = 35/111 (31%), Gaps = 3/111 (2%)
Query: 186 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 245
E LG Y + + D A+ + AL P +S + LG
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Query: 246 TVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDAGSISLAIDAYEQ 294
QG A + E +AA + + L V R A++ +
Sbjct: 64 QGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR-EDALEHHHH 113
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 2e-18
Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 2/104 (1%)
Query: 153 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 212
+ L + LG Y E +FD A+ A F+P + A LG +
Sbjct: 5 TERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ 64
Query: 213 DRDNLDKAVECYQMALSIKPNF--SQSLNNLGVVYTVQGKMDAA 254
+ + A + ++ L+ + Q + L V + DA
Sbjct: 65 GQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDAL 108
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 3e-17
Identities = 14/115 (12%), Positives = 28/115 (24%), Gaps = 9/115 (7%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
L+ ++ LG + + AL DP Y+ A+
Sbjct: 5 TERLEAMLAQGTDN-------MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWK 57
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMY--AEAYCNMGVIYKNRGDLESAIACY 115
LG A +E + + V + ++ +
Sbjct: 58 WLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHH 112
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 3e-14
Identities = 14/120 (11%), Positives = 33/120 (27%), Gaps = 9/120 (7%)
Query: 108 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 167
+++ E LA + + + + + + + + + AL ++ Y+
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHE-------QFDAALPHLRAALDFDPTYS 53
Query: 168 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDNLDKAVECYQ 225
A LG A +E + L V + D +
Sbjct: 54 VAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHHH 113
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 1e-12
Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 2/73 (2%)
Query: 251 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 310
M A E +E +A LG Y + A+ L DP A +
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKW-- 58
Query: 311 LAMNYINEGHDDK 323
L +G
Sbjct: 59 LGKTLQGQGDRAG 71
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 5e-23
Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 7/112 (6%)
Query: 197 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 256
A A +LG + + +KA Y A+ + P+ NN VY + K +
Sbjct: 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63
Query: 257 MIEKAIAANP-------TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301
EKA+ A+A + G ++ +SLA+ + + L D
Sbjct: 64 FCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 6e-21
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 83
AI DLG + + + Y +A+++DP Y N VY E ++ + EK
Sbjct: 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67
Query: 84 A-------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 130
A + + A+A G ++ + DL A+ + R L+ + E+ K
Sbjct: 68 AVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKK 121
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 2e-18
Identities = 20/107 (18%), Positives = 40/107 (37%)
Query: 54 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 113
A A +LG + ++ A Y+KA P Y N +Y +
Sbjct: 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63
Query: 114 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 160
E+ + V +A A++ G + + D++ V ++ ++L
Sbjct: 64 FCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL 110
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 2e-17
Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 16/130 (12%)
Query: 87 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 146
A A ++G + D E A Y++ + + P+ NN A +
Sbjct: 3 AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEE------- 55
Query: 147 GDINQGVAYYKKAL-------YYNWHYADAMYNLGVAYGEMLKFDMAIVFYE--LAFHFN 197
+ V + +KA+ A AM G A+ + +A+ ++ L+ +
Sbjct: 56 KKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115
Query: 198 PHCAEACNNL 207
P + L
Sbjct: 116 PELVKKVKEL 125
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 9e-13
Identities = 16/86 (18%), Positives = 37/86 (43%)
Query: 229 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 288
+ + + + +LG Q + A +KAI +P+ YNN +Y + +
Sbjct: 2 NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAEC 61
Query: 289 IDAYEQCLKIDPDSRNAGQNRLLAMN 314
+ E+ +++ ++R + AM+
Sbjct: 62 VQFCEKAVEVGRETRADYKLIAKAMS 87
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 97.7 bits (244), Expect = 1e-22
Identities = 52/241 (21%), Positives = 84/241 (34%), Gaps = 31/241 (12%)
Query: 57 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN-RG---DLESAI 112
LG + + A +EKA + N+GV+Y +G +L+ A
Sbjct: 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAA 62
Query: 113 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 172
+ Y + A N+ + + G V + N+ + YY KA YA+ +
Sbjct: 63 SFYAK--ACDLNYSNGCHLLGNLYYS-GQGVSQ--NTNKALQYYSKACDLK--YAEGCAS 115
Query: 173 LGVAY--GEMLK--FDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECY 224
LG Y G+++ F A+ ++ A N + C LG +Y +L KA+ Y
Sbjct: 116 LGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASY 173
Query: 225 QMALSIKPNFSQSLNNLGVVYT----VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 280
A S N G +Y A KA NLG +
Sbjct: 174 DKA--CDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQY 229
Query: 281 D 281
+
Sbjct: 230 N 230
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 6e-21
Identities = 55/261 (21%), Positives = 89/261 (34%), Gaps = 42/261 (16%)
Query: 45 QKYYEALKI-----DPHYAPAYYNLGVVYSE---LMQ-YDTALGCYEKAALERPMYAEAY 95
+ + +A K D +NLGV+Y + + + A Y KA Y+
Sbjct: 20 KDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77
Query: 96 CNMGVIYKN-RG---DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 151
+G +Y + +G + A+ Y + A + ++ D G V D +
Sbjct: 78 HLLGNLYYSGQGVSQNTNKALQYYSK--ACDLKYAEGCASLGGIYHD-GKVV--TRDFKK 132
Query: 152 GVAYYKKALYYNWHYADAMYNLGVAY--GEMLKFDM--AIVFYELAFHFNPHCAEACNNL 207
V Y+ KA N D LG Y G D+ A+ Y+ A + C N
Sbjct: 133 AVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNA 188
Query: 208 GVIYKDRD----NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK-----MDAAAEMI 258
G +Y + N +A+ Y A + NLG + G+ A E
Sbjct: 189 GNMYHHGEGATKNFKEALARYSKA--CELENGGGCFNLGAMQ-YNGEGVTRNEKQAIENF 245
Query: 259 EKAIAANPTYAEAYNNLGVLY 279
+K A + L L
Sbjct: 246 KKGCKLG--AKGACDILKQLK 264
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 1e-11
Identities = 34/172 (19%), Positives = 57/172 (33%), Gaps = 31/172 (18%)
Query: 57 YAPAYYNLGVVYSE---LMQ-YDTALGCYEKAALERPMYAEAYCNMGVIYKN-RG---DL 108
YA +LG +Y + + + + A+ + KA + +G +Y RG DL
Sbjct: 109 YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDL 166
Query: 109 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 168
+ A+A Y++ A N G + + +A Y KA
Sbjct: 167 KKALASYDK--ACDLKDSPGCFNAGNMYHH-GEGA--TKNFKEALARYSKACELE--NGG 219
Query: 169 AMYNLGVAY----GEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYK 212
+NLG G AI ++ C AC+ L +
Sbjct: 220 GCFNLGAMQYNGEGVTRNEKQAIENFKKG------CKLGAKGACDILKQLKI 265
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 3e-22
Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 2/91 (2%)
Query: 197 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 256
+P L + DN +A+ ++ + P++ + +LG +Y + D A +
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62
Query: 257 MIEKAIAANPTYAEAY--NNLGVLYRDAGSI 285
+ I + L A +
Sbjct: 63 TYAQGIEVAREEGTQKDLSELQDAKLKAEGL 93
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 3e-21
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Query: 54 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 113
DP Y L + + AL +E+ P Y Y ++G +Y+ + AI
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62
Query: 114 CYERCLAVSPNFEIAK--NNMAIALTDLG 140
Y + + V+ K + + A
Sbjct: 63 TYAQGIEVAREEGTQKDLSELQDAKLKAE 91
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 3e-19
Identities = 16/74 (21%), Positives = 27/74 (36%)
Query: 232 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 291
P + L + A + E+ + +P Y Y +LG LY AID
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63
Query: 292 YEQCLKIDPDSRNA 305
Y Q +++ +
Sbjct: 64 YAQGIEVAREEGTQ 77
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 9e-19
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 2/89 (2%)
Query: 166 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 225
Y L + + A+ +E +P +LG +Y+ D D A++ Y
Sbjct: 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65
Query: 226 MALSIKPNFS--QSLNNLGVVYTVQGKMD 252
+ + + L+ L ++
Sbjct: 66 QGIEVAREEGTQKDLSELQDAKLKAEGLE 94
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 1e-16
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 2/88 (2%)
Query: 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 89
L N + + E ++ DP Y YY+LG +Y L + D A+ Y +
Sbjct: 13 LAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72
Query: 90 MYAEAY--CNMGVIYKNRGDLESAIACY 115
+ LE +
Sbjct: 73 EEGTQKDLSELQDAKLKAEGLEHHHHHH 100
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 3e-16
Identities = 10/107 (9%), Positives = 29/107 (27%), Gaps = 9/107 (8%)
Query: 86 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 145
+E P + + + A+A +E + P++ ++ L
Sbjct: 1 MEDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERL------ 54
Query: 146 EGDINQGVAYYKKALYYNWHYADA--MYNLGVAYGEMLKFDMAIVFY 190
+ + Y + + + L A + + +
Sbjct: 55 -DRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHHHH 100
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 3e-08
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 265 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 323
+P L + + S A+ +E+ ++ DPD + L Y D
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYH--LGKLYERLDRTDD 59
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 90.0 bits (223), Expect = 3e-21
Identities = 16/148 (10%), Positives = 41/148 (27%)
Query: 147 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 206
G + G + + +Y+L + ++ A ++ + + +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 207 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 266
LG + D A+ Y + + + G++ A + A
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120
Query: 267 TYAEAYNNLGVLYRDAGSISLAIDAYEQ 294
E + +I L + +
Sbjct: 121 NXPEFXELSTRVSSMLEAIKLKKEMKHE 148
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 86.5 bits (214), Expect = 5e-20
Identities = 13/142 (9%), Positives = 31/142 (21%)
Query: 182 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 241
+ + E +L + A +Q + S+ L
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61
Query: 242 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301
G G+ D A + + G ++ A ++ +
Sbjct: 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121
Query: 302 SRNAGQNRLLAMNYINEGHDDK 323
+ + + K
Sbjct: 122 XPEFXELSTRVSSMLEAIKLKK 143
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 83.4 bits (206), Expect = 5e-19
Identities = 16/140 (11%), Positives = 36/140 (25%), Gaps = 7/140 (5%)
Query: 38 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 97
G G +I Y+L + Y+ A ++ + + +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 98 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 157
+G + G + AI Y + + A L G++ + +
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL-------LQXGELAEAESGLF 113
Query: 158 KALYYNWHYADAMYNLGVAY 177
A + +
Sbjct: 114 LAQELIANXPEFXELSTRVS 133
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 83.4 bits (206), Expect = 5e-19
Identities = 18/138 (13%), Positives = 35/138 (25%), Gaps = 7/138 (5%)
Query: 4 ASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN 63
+ L L + +G +D + +D + + +
Sbjct: 8 GTIAMLNEISSDT-------LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 64 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 123
LG + QYD A+ Y A+ + G+L A + +
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120
Query: 124 NFEIAKNNMAIALTDLGT 141
N + L
Sbjct: 121 NXPEFXELSTRVSSMLEA 138
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 81.1 bits (200), Expect = 3e-18
Identities = 20/152 (13%), Positives = 41/152 (26%), Gaps = 7/152 (4%)
Query: 106 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 165
G L S +S + ++A G ++ + +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGX-------YEDAHXVFQALCVLDHY 53
Query: 166 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 225
+ LG M ++D+AI Y + + L +A
Sbjct: 54 DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF 113
Query: 226 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 257
+A + N + V ++ + EM
Sbjct: 114 LAQELIANXPEFXELSTRVSSMLEAIKLKKEM 145
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 2e-04
Identities = 7/57 (12%), Positives = 15/57 (26%)
Query: 249 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 305
G + + I + E +L +G A ++ +D
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF 57
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 4e-21
Identities = 30/122 (24%), Positives = 52/122 (42%)
Query: 197 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 256
+ AE G +N + AV Y A+ + P + N Y+ G A +
Sbjct: 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQ 67
Query: 257 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYI 316
E+AI +P Y++AY +G+ A+ Y++ L++DPD+ N +A +
Sbjct: 68 DCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127
Query: 317 NE 318
E
Sbjct: 128 RE 129
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 6e-21
Identities = 30/104 (28%), Positives = 52/104 (50%)
Query: 37 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 96
N + + Y +A++++P A + N YS+L Y A+ E+A P Y++AY
Sbjct: 25 VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG 84
Query: 97 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 140
MG+ + A+A Y++ L + P+ E K+N+ IA L
Sbjct: 85 RMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 1e-18
Identities = 27/115 (23%), Positives = 47/115 (40%)
Query: 166 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 225
A+ + G ++ F+ A+ FY A NP A N Y N AV+ +
Sbjct: 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCE 70
Query: 226 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 280
A+ I P +S++ +G+ + K A +KA+ +P +NL +
Sbjct: 71 RAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 4e-18
Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 7/132 (5%)
Query: 49 EALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 108
+ D A G ++ ++ A+ Y KA P A +CN Y G+
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
Query: 109 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 168
A+ ER + + P + A M +AL+ L + VAYYKKAL +
Sbjct: 63 AGAVQDCERAICIDPAYSKAYGRMGLALSSL-------NKHVEAVAYYKKALELDPDNET 115
Query: 169 AMYNLGVAYGEM 180
NL +A ++
Sbjct: 116 YKSNLKIAELKL 127
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 5e-16
Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 7/126 (5%)
Query: 87 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 146
E AE G + E+A+ Y + + ++P + N A A + L
Sbjct: 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKL------- 59
Query: 147 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 206
G+ V ++A+ + Y+ A +G+A + K A+ +Y+ A +P +N
Sbjct: 60 GNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSN 119
Query: 207 LGVIYK 212
L +
Sbjct: 120 LKIAEL 125
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 3e-11
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
V Y KA+ +P+ A+ + + GN +Q A+ IDP Y+ AY
Sbjct: 32 VHFYGKAIELNPAN-------AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG 84
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 107
+G+ S L ++ A+ Y+KA P N+ + +
Sbjct: 85 RMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 5e-10
Identities = 18/72 (25%), Positives = 27/72 (37%)
Query: 230 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 289
++ L G +AA KAI NP A + N Y G+ + A+
Sbjct: 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAV 66
Query: 290 DAYEQCLKIDPD 301
E+ + IDP
Sbjct: 67 QDCERAICIDPA 78
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 90.3 bits (224), Expect = 4e-21
Identities = 23/135 (17%), Positives = 50/135 (37%), Gaps = 3/135 (2%)
Query: 176 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 235
+ + + + NP +E LG Y +++ ++ Y+ AL ++ +
Sbjct: 19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA 78
Query: 236 QSLNNLGVVYTVQGK---MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 292
+ L V Q MI+KA+A + A L + + AI+ +
Sbjct: 79 ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELW 138
Query: 293 EQCLKIDPDSRNAGQ 307
++ + ++ N Q
Sbjct: 139 QKVMDLNSPRINRTQ 153
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 80.3 bits (198), Expect = 2e-17
Identities = 21/153 (13%), Positives = 46/153 (30%), Gaps = 4/153 (2%)
Query: 123 PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 182
P ++ + D + + + + + + N ++ LG Y
Sbjct: 1 PKWQAVRAEYQ-RQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQND 59
Query: 183 FDMAIVFYELAFHFNPHCAEACNNLGVIY---KDRDNLDKAVECYQMALSIKPNFSQSLN 239
+ +++ Y A AE L + + + AL++ N +L
Sbjct: 60 YSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM 119
Query: 240 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 272
L +Q A E+ +K + N
Sbjct: 120 LLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 75.7 bits (186), Expect = 5e-16
Identities = 25/150 (16%), Positives = 50/150 (33%), Gaps = 11/150 (7%)
Query: 14 PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 73
P ++ A D N + +Q + ++ +P + + LG Y
Sbjct: 1 PKWQ-AVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQND 59
Query: 74 YDTALGCYEKAALERPMYAEAYCNMGVIY---KNRGDLESAIACYERCLAVSPNFEIAKN 130
Y +L Y +A R AE Y + + ++ A ++ LA+ N A
Sbjct: 60 YSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM 119
Query: 131 NMAIALTDLGTKVKLEGDINQGVAYYKKAL 160
+A + Q + ++K +
Sbjct: 120 LLASDAFMQ-------ANYAQAIELWQKVM 142
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 1e-14
Identities = 26/126 (20%), Positives = 44/126 (34%), Gaps = 8/126 (6%)
Query: 211 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 270
+ + N + ++ Q + P S+ LG Y Q + +A+ AE
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79
Query: 271 AYNNLG-VLYRDAGSISL--AIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 327
Y L VLY A ++ L +D + A LLA + + + +A
Sbjct: 80 LYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITA--LMLLASDAFMQANYA---QA 134
Query: 328 HRDWGK 333
W K
Sbjct: 135 IELWQK 140
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 4e-12
Identities = 16/126 (12%), Positives = 37/126 (29%), Gaps = 10/126 (7%)
Query: 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 61
+ + + A+P + LG + + + Y +AL++ A Y
Sbjct: 29 QLQALQDKIRANPQN-------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELY 81
Query: 62 YNLGVVYSELMQY---DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 118
L V +KA A + + + AI +++
Sbjct: 82 AALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKV 141
Query: 119 LAVSPN 124
+ ++
Sbjct: 142 MDLNSP 147
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 9e-10
Identities = 18/87 (20%), Positives = 33/87 (37%)
Query: 236 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 295
Q + + Q +A + ++ I ANP +E + LG Y S ++ AY Q
Sbjct: 11 QRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQA 70
Query: 296 LKIDPDSRNAGQNRLLAMNYINEGHDD 322
L++ ++ + Y H
Sbjct: 71 LQLRGENAELYAALATVLYYQASQHMT 97
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 8e-09
Identities = 15/96 (15%), Positives = 25/96 (26%), Gaps = 10/96 (10%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN---TQDGIQKYYEALKIDPHYAP 59
+ +Y +AL L T L + T +AL +D +
Sbjct: 64 LLAYRQALQLRGENAEL-------YAALATVLYYQASQHMTAQTRAMIDKALALDSNEIT 116
Query: 60 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAY 95
A L Y A+ ++K
Sbjct: 117 ALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 87.9 bits (218), Expect = 1e-20
Identities = 11/122 (9%), Positives = 38/122 (31%)
Query: 190 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 249
+ + + + ++ +++A ++ + L +Y ++
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84
Query: 250 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 309
+ AA++ A A + G + A + +E ++ D + + +
Sbjct: 85 QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQ 144
Query: 310 LL 311
Sbjct: 145 SY 146
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 1e-19
Identities = 19/113 (16%), Positives = 40/113 (35%)
Query: 154 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 213
A K D +Y+ + + + A VF+ ++ + + L IY+
Sbjct: 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI 82
Query: 214 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 266
++ +A + Y +A ++ N + + G A E E I +
Sbjct: 83 KEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 81.4 bits (201), Expect = 3e-18
Identities = 13/104 (12%), Positives = 26/104 (25%)
Query: 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 89
G ++ + D + L +Y Q+ A Y A
Sbjct: 42 YAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK 101
Query: 90 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 133
+ G A C+E + S + ++ +
Sbjct: 102 NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQS 145
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 1e-17
Identities = 10/114 (8%), Positives = 28/114 (24%), Gaps = 7/114 (6%)
Query: 47 YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106
+ I Y+ + + + A + + + + IY+ +
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84
Query: 107 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 160
+ A Y A+ N + L + ++ +
Sbjct: 85 QFQQAADLYAVAFALGKNDYTPVFHTGQCQLRL-------KAPLKAKECFELVI 131
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 1e-15
Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 1/108 (0%)
Query: 126 EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 185
I + M + +G I + +++ Y+++ D + L Y +F
Sbjct: 30 AIPDDMMD-DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQ 88
Query: 186 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 233
A Y +AF + + G KA EC+++ + +
Sbjct: 89 AADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 4e-13
Identities = 8/81 (9%), Positives = 24/81 (29%)
Query: 222 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 281
+ +I + + + + +G+++ A + + L +Y+
Sbjct: 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI 82
Query: 282 AGSISLAIDAYEQCLKIDPDS 302
A D Y + +
Sbjct: 83 KEQFQQAADLYAVAFALGKND 103
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 2e-20
Identities = 48/247 (19%), Positives = 81/247 (32%), Gaps = 39/247 (15%)
Query: 57 YAPAYYNLGVVYSE---LMQ-YDTALGCYEKAALERPMYAEAYCNMGVIYKN-RG---DL 108
+ LG +YS + + + Y K+A ++ +Y G D
Sbjct: 182 NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG--DELGQLHLADMYYFGIGVTQDY 239
Query: 109 ESAIACYERCLAVSPNFEIAKNNMAIA-LTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 167
+ + + + IA+ + L + + + +Y+K+ +
Sbjct: 240 TQSRVLFSQ--SAEQGNSIAQFRLGYILEQGLAGAK----EPLKALEWYRKS--AEQGNS 291
Query: 168 DAMYNLGVAYGEMLK-----FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDK 219
D Y L Y + + + AI +Y + A A NLG IY K
Sbjct: 292 DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--DATAQANLGAIYFRLGSEEEHKK 349
Query: 220 AVECYQMALSIKPNFSQSLNNLGVVYTVQGK-----MDAAAEMIEKAIAANPTYAEAYNN 274
AVE ++ A + NLG QGK AA + KA + A
Sbjct: 350 AVEWFRKA--AAKGEKAAQFNLGNALL-QGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQ 404
Query: 275 LGVLYRD 281
LG +Y
Sbjct: 405 LGEIYYY 411
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 3e-19
Identities = 48/249 (19%), Positives = 79/249 (31%), Gaps = 38/249 (15%)
Query: 57 YAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN-RG---DL 108
A NLGV+Y E + ++ + AA + +MG Y G D
Sbjct: 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDY 167
Query: 109 ESAIACYERCLAVSPNFEIAKNNMAIALTD-LGTKVKLEGDINQGVAYYKKALYYNWHYA 167
A Y + A + N + + LG + + +Y+K+
Sbjct: 168 VMAREWYSK--AAEQGNVWSCNQLGYMYSRGLGVER----NDAISAQWYRKS--ATSGDE 219
Query: 168 DAMYNLGVAY--GEMLKFD--MAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDK 219
+L Y G + D + V + + + A LG I + K
Sbjct: 220 LGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--NSIAQFRLGYILEQGLAGAKEPLK 277
Query: 220 AVECYQMALSIKPNFSQSLNNLGVVYT-----VQGKMDAAAEMIEKAIAANPTYAEAYNN 274
A+E Y+ + + S L +Y V + A K+ A A N
Sbjct: 278 ALEWYRKS--AEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--DATAQAN 333
Query: 275 LGVLYRDAG 283
LG +Y G
Sbjct: 334 LGAIYFRLG 342
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 7e-19
Identities = 46/245 (18%), Positives = 84/245 (34%), Gaps = 35/245 (14%)
Query: 57 YAPAYYNLGVVYSELM----QYDTALGCYEKAALERPMYAEAYCNMGVIYKN-RG---DL 108
A A LG Y + A+ + +AA + Y A +G+ Y N G D
Sbjct: 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--YTPAEYVLGLRYMNGEGVPQDY 95
Query: 109 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 168
A+ Y++ A A+ N+ + + G V + D + V +++ A
Sbjct: 96 AQAVIWYKK--AALKGLPQAQQNLGVMYHE-GNGV--KVDKAESVKWFRLA--AEQGRDS 148
Query: 169 AMYNLGVAY--GEMLKFDM--AIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKA 220
++G AY G+ + D A +Y A +CN LG +Y N +
Sbjct: 149 GQQSMGDAYFEGDGVTRDYVMAREWYSKA--AEQGNVWSCNQLGYMYSRGLGVERNDAIS 206
Query: 221 VECYQMALSIKPNFSQSLNNLGVVYT----VQGKMDAAAEMIEKAIAANPTYAEAYNNLG 276
+ Y+ + +L +Y V + + ++ + A LG
Sbjct: 207 AQWYRKS--ATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--NSIAQFRLG 262
Query: 277 VLYRD 281
+
Sbjct: 263 YILEQ 267
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 5e-14
Identities = 35/191 (18%), Positives = 67/191 (35%), Gaps = 32/191 (16%)
Query: 57 YAPAYYNLGVVYSELMQ-----YDTALGCYEKAALERPMYAEAYCNMGVIYKNRG---DL 108
+ Y L +Y + + + A+ Y K+A + A A N+G IY G +
Sbjct: 290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--DATAQANLGAIYFRLGSEEEH 347
Query: 109 ESAIACYERCLAVSPNFEIAKNNMAIALTD-LGTKVKLEGDINQGVAYYKKALYYNWHYA 167
+ A+ + + A + + A+ N+ AL G K D Q + +KA +
Sbjct: 348 KKAVEWFRK--AAAKGEKAAQFNLGNALLQGKGVKK----DEQQAAIWMRKAAEQG--LS 399
Query: 168 DAMYNLGVAY--GEMLKFD--MAIVFYELAFHFNPHCAEACNNLGVIYKDR-------DN 216
A LG Y G ++ D A +++ A + I + +
Sbjct: 400 AAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM--NLFGTENRNITEKKLTAKQLQQA 457
Query: 217 LDKAVECYQMA 227
+ + +
Sbjct: 458 ELLSQQYIEKY 468
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 1e-09
Identities = 40/239 (16%), Positives = 77/239 (32%), Gaps = 75/239 (31%)
Query: 61 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 120
+ + + + L ++ A A+A +G Y
Sbjct: 14 FALVSLPAL----GNVNLEQLKQKAESG--EAKAQLELGYRYFQG-------------NE 54
Query: 121 VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY--G 178
+ + A + ++++A Y A Y LG+ Y G
Sbjct: 55 TTKDLTQA------------------------MDWFRRAAEQG--YTPAEYVLGLRYMNG 88
Query: 179 EMLKFDM--AIVFYELAFHFNPHCAE-----ACNNLGVIYKDRD----NLDKAVECYQMA 227
E + D A+++Y+ A A A NLGV+Y + + + ++V+ +++A
Sbjct: 89 EGVPQDYAQAVIWYKKA-------ALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLA 141
Query: 228 LSIKPNFSQSLNNLGVVYTVQGK-----MDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 281
+ ++G Y +G A E KA + N LG +Y
Sbjct: 142 --AEQGRDSGQQSMGDAY-FEGDGVTRDYVMAREWYSKAAEQG--NVWSCNQLGYMYSR 195
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 9e-20
Identities = 59/339 (17%), Positives = 97/339 (28%), Gaps = 47/339 (13%)
Query: 16 YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK-IDPHYAPAYYNLGVVYSE---L 71
+ A + G + K Y L VY +
Sbjct: 133 SQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQP 192
Query: 72 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKN------RGDLESAIACYERCLAVSPNF 125
Q L E R A V D ++A A E ++P +
Sbjct: 193 EQQAELLKQMEAGV-SR-GTVTAQRVDSVARVLGDATLGTPDEKTAQALLE---KIAPGY 247
Query: 126 EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY--GEMLKF 183
+ ++A L D GD+ Q + Y + A LG Y G+ +
Sbjct: 248 PASWVSLAQLLYDFPE----LGDVEQMMKYLDNGRAAD--QPRAELLLGKLYYEGKWVPA 301
Query: 184 DM--AIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQS 237
D A +E A A LG IY+ + KA++ A + + +
Sbjct: 302 DAKAAEAHFEKAVGREV---AADYYLGQIYRRGYLGKVYPQKALDHLLTA--ARNGQNSA 356
Query: 238 LNNLGVVYTVQGK-----MDAAAEMIEKAIAANPTYAEAYNNLGVLYR--DAGSISLAID 290
+ ++ QGK A + A A + EA + L +
Sbjct: 357 DFAIAQLF-SQGKGTKPDPLNAYVFSQLAKAQD--TPEANDLATQLEAPLTPAQRAEGQR 413
Query: 291 AYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 329
+Q L + +L A+ E ++ L E H
Sbjct: 414 LVQQELAAR-GTLAQSTLQLHALQ--EEDGEESLLEHHH 449
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 2e-16
Identities = 37/243 (15%), Positives = 72/243 (29%), Gaps = 35/243 (14%)
Query: 57 YAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 112
L ++Y + + + A Y EA ++Y+ +G + +
Sbjct: 105 EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHL 161
Query: 113 ACYER-CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 171
ER C A +I +A + + + + + + A
Sbjct: 162 DDVERICKAALNTTDICYVELATVY-QKKQQPE---QQAELLKQMEAGVSRG--TVTAQR 215
Query: 172 NLGVAY----GEMLKFDM--AIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVE 222
VA + D A E P + +L + D ++++ ++
Sbjct: 216 VDSVARVLGDATLGTPDEKTAQALLEKIAPGYP---ASWVSLAQLLYDFPELGDVEQMMK 272
Query: 223 CYQMALSIKPNFSQSLNNLGVVYT----VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 278
+ ++ LG +Y V AA EKA+ A LG +
Sbjct: 273 YLDNGR--AADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAVGREV---AADYYLGQI 327
Query: 279 YRD 281
YR
Sbjct: 328 YRR 330
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 4e-14
Identities = 35/235 (14%), Positives = 62/235 (26%), Gaps = 39/235 (16%)
Query: 74 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRG---DLESAIACYERCLAVSPNFEIAKN 130
TA Y++ A Y+EA + I ++ A A Y A +
Sbjct: 19 TVTAQQNYQQLA--ELGYSEAQVGLADIQVGTRDPAQIKQAEATYRA----------AAD 66
Query: 131 NMAIALTDLGT-----KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY----GEML 181
A LG E + ++ + KKA + + + L + Y
Sbjct: 67 TSPRAQARLGRLLAAKPGATEAEHHEAESLLKKA--FANGEGNTLIPLAMLYLQYPHSFP 124
Query: 182 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR---DNLDKAVECYQMALSIKPNFSQSL 238
+ + EA ++Y+ + D VE A
Sbjct: 125 NVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDVERICKA--ALNTTDICY 179
Query: 239 NNLGVVYTVQG---KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 290
L VY + + + +E + A V + D
Sbjct: 180 VELATVYQKKQQPEQQAELLKQMEAG--VSRGTVTAQRVDSVARVLGDATLGTPD 232
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 2e-13
Identities = 25/244 (10%), Positives = 60/244 (24%), Gaps = 32/244 (13%)
Query: 57 YAPAYYNLGVVYSEL--MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-----DLE 109
Y+ A L + +AA + A +G + + +
Sbjct: 34 YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAKPGATEAEHH 91
Query: 110 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA 169
A + ++ A + +A+ ++N + +A
Sbjct: 92 EAESLLKK--AFANGEGNTLIPLAMLYLQ-YPHSFP--NVNAQQQISQWQAAGY---PEA 143
Query: 170 MYNLGVAY-GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY---KDRDNLDKAVECYQ 225
+ Y + + L +Y + + + ++ +
Sbjct: 144 GLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQME 203
Query: 226 MALSIKPNFSQSLNNLGVVYT----VQGKMD--AAAEMIEKAIAANPTYAEAYNNLGVLY 279
+ + V G D A ++EK P ++ +L L
Sbjct: 204 AGV--SRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYP---ASWVSLAQLL 258
Query: 280 RDAG 283
D
Sbjct: 259 YDFP 262
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 1e-10
Identities = 33/201 (16%), Positives = 60/201 (29%), Gaps = 20/201 (9%)
Query: 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY---GEMLKFDMAIVF 189
+ L + GD Y++ Y++A L + + A
Sbjct: 3 GLPDQRLANEALKRGDTVTAQQNYQQL--AELGYSEAQVGLADIQVGTRDPAQIKQAEAT 60
Query: 190 YELAFHFNPHCAEACNNLGVIYKD-----RDNLDKAVECYQMALSIKPNFSQSLNNLGVV 244
Y A A LG + +A + A +L L ++
Sbjct: 61 YRAA---ADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKA--FANGEGNTLIPLAML 115
Query: 245 YT--VQGKMD-AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301
Y + A + I + AA Y EA +LYR G+ +D E+ K +
Sbjct: 116 YLQYPHSFPNVNAQQQISQWQAAG--YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN 173
Query: 302 SRNAGQNRLLAMNYINEGHDD 322
+ + L + + +
Sbjct: 174 TTDICYVELATVYQKKQQPEQ 194
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 87.4 bits (216), Expect = 5e-19
Identities = 30/213 (14%), Positives = 57/213 (26%), Gaps = 28/213 (13%)
Query: 45 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA------LERPMYAEAYCNM 98
K+ EA A +Y + + A + KAA Y
Sbjct: 31 YKFEEA-------ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEA 83
Query: 99 GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE-GDINQGVAYYK 157
+K+ G+ +A+ E + + + A +LG ++ + D + + Y+
Sbjct: 84 YKCFKSGGNSVNAVDSLENAIQIFTHRG-QFRRGANFKFELGEILENDLHDYAKAIDCYE 142
Query: 158 KAL------YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-------AEAC 204
A ++ A Y + +
Sbjct: 143 LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202
Query: 205 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 237
G+ + A Q S PNF+ S
Sbjct: 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 78.9 bits (194), Expect = 3e-16
Identities = 42/286 (14%), Positives = 86/286 (30%), Gaps = 65/286 (22%)
Query: 81 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 140
+E+AA + IY+ R +L A + +
Sbjct: 33 FEEAA-------DLCVQAATIYRLRKELNLAGDSFLKAADYQ------------------ 67
Query: 141 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH- 199
K + + A+ E A H
Sbjct: 68 -----------------KKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR 110
Query: 200 -----CAEACNNLGVIY-KDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTV 247
A LG I D + KA++CY++A ++ + +
Sbjct: 111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL 170
Query: 248 QGKMDAAAEMIEKAIAA-------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 300
G+ A+++ K I + + + + G+ A A ++ DP
Sbjct: 171 DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230
Query: 301 DSRNAGQNRLLA--MNYINEGHDDKLFEAHRDWGKRFMRLYSQYTS 344
+ ++ ++ L ++ +NEG ++L E +++ FMRL +
Sbjct: 231 NFADSRESNFLKSLIDAVNEGDSEQLSEHCKEF-DNFMRLDKWKIT 275
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 1e-09
Identities = 25/177 (14%), Positives = 53/177 (29%), Gaps = 25/177 (14%)
Query: 6 YHKALSADPSYKPAAEC---------LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 56
+ A + + AA+ + K GN+ + + A++I H
Sbjct: 53 LNLAGDS---FLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTH 109
Query: 57 Y------APAYYNLGVVY-SELMQYDTALGCYEKAAL------ERPMYAEAYCNMGVIYK 103
A + LG + ++L Y A+ CYE A + + + +
Sbjct: 110 RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA 169
Query: 104 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 160
G A Y + + S +++ ++ G D ++
Sbjct: 170 LDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 2e-06
Identities = 19/117 (16%), Positives = 32/117 (27%), Gaps = 14/117 (11%)
Query: 24 AIVLTDLGTSL-KLAGNTQDGIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDT 76
A +LG L + I Y A + + + + QY
Sbjct: 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176
Query: 77 ALGCYEKAA-------LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 126
A Y K L + + + G+ D +A + + PNF
Sbjct: 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA 233
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 8e-19
Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 4/103 (3%)
Query: 38 GNTQDGIQKYYEALKI---DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 94
G + Y +A+ A Y LG + L +Y A + P +
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 95 YCNMGVIYKNRGDLESAIACYERCLAVSPNFE-IAKNNMAIAL 136
++ N G E + + +A + + E I AI
Sbjct: 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILF 106
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 7e-18
Identities = 11/89 (12%), Positives = 31/89 (34%), Gaps = 3/89 (3%)
Query: 217 LDKAVECYQMALSIK---PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 273
+AV Y+ A++ + ++ LG + G+ A ++ + P +
Sbjct: 6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRV 65
Query: 274 NLGVLYRDAGSISLAIDAYEQCLKIDPDS 302
++ + G ++ + + D
Sbjct: 66 FYAMVLYNLGRYEQGVELLLKIIAETSDD 94
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 2e-16
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 15/109 (13%)
Query: 73 QYDTALGCYEKA---ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 129
A+ YEKA L+ AE Y +G ++ G+ A A + PN + +
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64
Query: 130 NNMAIALTDLG---------TKVKLEGDINQGVAYYKKALYYNWHYADA 169
A+ L +LG K+ E ++ + YK+A+ + YAD
Sbjct: 65 VFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILF---YADK 110
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 6e-15
Identities = 23/118 (19%), Positives = 35/118 (29%), Gaps = 14/118 (11%)
Query: 182 KFDMAIVFYELAFHFN---PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 238
A+ +YE A AE LG ++ KA + PN
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64
Query: 239 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 296
+V G+ + E++ K IA + Y+ AI Y L
Sbjct: 65 VFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS-----YK------QAILFYADKL 111
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 1e-13
Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 3/90 (3%)
Query: 147 GDINQGVAYYKKAL---YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 203
G Q V YY+KA+ A+ LG + + ++ A P+
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 204 CNNLGVIYKDRDNLDKAVECYQMALSIKPN 233
++ + ++ VE ++ +
Sbjct: 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSD 93
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 2e-12
Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Query: 247 VQGKMDAAAEMIEKAIAAN---PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 303
V G A EKAIA+ AE Y LG +R G A +K P+ +
Sbjct: 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ 61
Query: 304 NAGQNRLLAMNYINEGHDDK 323
AM N G ++
Sbjct: 62 ALRVF--YAMVLYNLGRYEQ 79
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 2e-10
Identities = 23/119 (19%), Positives = 39/119 (32%), Gaps = 19/119 (15%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
V Y KA+++ K AEC LG++ + G + +K P++
Sbjct: 10 VPYYEKAIASGLQGKDLAECY----LGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRV 65
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAE--AYCNMGVIYKNRGDLESAIACYERCL 119
+V L +Y+ + K E +Y + AI Y L
Sbjct: 66 FYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSY-------------KQAILFYADKL 111
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 4e-18
Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 7/114 (6%)
Query: 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 83
A+ +LG + ++ Y +A ++DP N VY E Y+ EK
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 84 A-------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 130
A + A+AY +G Y + AI Y + LA ++ K
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 2e-16
Identities = 26/109 (23%), Positives = 38/109 (34%), Gaps = 7/109 (6%)
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 260
A LG + + D A++ Y A + P + N VY +G + E+ EK
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 261 AI-------AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302
AI A+AY +G Y AI Y + L
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 9e-13
Identities = 24/103 (23%), Positives = 36/103 (34%)
Query: 58 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 117
A LG + +DTAL Y+KA P N +Y +GD E+
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 118 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 160
+ V +A A +G E + +Y K+L
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 3e-10
Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 7/108 (6%)
Query: 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 192
A+ +LG + D + + +Y KA + + N Y E ++ E
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 193 AFHFNPHC-------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 233
A A+A +G Y + A+ Y +L+
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 8e-08
Identities = 13/74 (17%), Positives = 28/74 (37%)
Query: 236 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 295
LG + D A + +KA +PT N +Y + G + + E+
Sbjct: 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64
Query: 296 LKIDPDSRNAGQNR 309
+++ ++R +
Sbjct: 65 IEVGRENREDYRQI 78
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 3e-17
Identities = 30/224 (13%), Positives = 64/224 (28%), Gaps = 37/224 (16%)
Query: 77 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 136
Y++ A A + + + GD + A ++ A AL
Sbjct: 5 PGSQYQQQAEAG--DRRAQYYLADTWVSSGDYQKAEYWAQKA---------AAQGDGDAL 53
Query: 137 TDLGTKVKLEG----DINQGVAYYKKALYYNWHYADAMYNLGVAY--GEMLK--FDMAIV 188
L ++K+ D Q +KA+ L + AI
Sbjct: 54 ALLA-QLKIRNPQQADYPQARQLAEKAVEAG--SKSGEIVLARVLVNRQAGATDVAHAIT 110
Query: 189 FYELAFH--FNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLG 242
+ A + +A LG+IY ++ KA E ++ + S + G
Sbjct: 111 LLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS-SSLSRTGYAEYWAG 169
Query: 243 VVY------TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 280
+++ ++ A + + + + +
Sbjct: 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFDRISK 211
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 7e-17
Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 23/186 (12%)
Query: 57 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG---DLESAIA 113
A Y L + Y A +KAA + +A + + D A
Sbjct: 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQLKIRNPQQADYPQARQ 74
Query: 114 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA--LYYNWHYADAMY 171
E+ AV + + +A L + D+ + + A + DA
Sbjct: 75 LAEK--AVEAGSKSGEIVLARVLVN-RQAGAT--DVAHAITLLQDAARDSESDAAVDAQM 129
Query: 172 NLGVAY--GEMLK--FDMAIVFYELAFHFNPHCAEACNNLGVIYKD------RDNLDKAV 221
LG+ Y G A +++ + A G++++ N KA+
Sbjct: 130 LLGLIYASGVHGPEDDVKASEYFKGSSS-LSRTGYAEYWAGMMFQQGEKGFIEPNKQKAL 188
Query: 222 ECYQMA 227
++
Sbjct: 189 HWLNVS 194
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 2e-12
Identities = 25/175 (14%), Positives = 48/175 (27%), Gaps = 31/175 (17%)
Query: 57 YAPAYYNLGVVYSE--LMQ-YDTALGCYEKAALERPMYAEAYCNMGVIYKN-RG---DLE 109
A L + Y A EKA + + N + D+
Sbjct: 49 DGDALALLAQLKIRNPQQADYPQARQLAEKAVEAG--SKSGEIVLARVLVNRQAGATDVA 106
Query: 110 SAIACYER--CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 167
AI + + S A+ + + G D + Y+K + +
Sbjct: 107 HAITLLQDAARDSESDAAVDAQMLLGLIYAS-GVHGPE--DDVKASEYFKGSSSLS-RTG 162
Query: 168 DAMYNLGVAY----GEMLKFDM--AIVFYELAFHFNPHC----AEACNNLGVIYK 212
A Y G+ + ++ + A+ + ++ C C I K
Sbjct: 163 YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS------CLEGFDTGCEEFDRISK 211
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 3e-07
Identities = 14/84 (16%), Positives = 22/84 (26%), Gaps = 7/84 (8%)
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT---VQGKMDAAAEM 257
A L + + KA Q A +L L + Q A ++
Sbjct: 18 RRAQYYLADTWVSSGDYQKAEYWAQKA--AAQGDGDALALLAQLKIRNPQQADYPQARQL 75
Query: 258 IEKAIAANPTYAEAYNNLGVLYRD 281
EK A L + +
Sbjct: 76 AEK--AVEAGSKSGEIVLARVLVN 97
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 82.1 bits (202), Expect = 8e-17
Identities = 28/224 (12%), Positives = 58/224 (25%), Gaps = 39/224 (17%)
Query: 81 YEKAALERPMYAEAYCNM--GVIYKNRGD---LESAIACYERCLAVSPNFEIAKNNMAIA 135
E P N Y GD L A + SP F A+ A+
Sbjct: 183 QETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALV 242
Query: 136 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 195
+ + L ++
Sbjct: 243 --------------------DIVRHSQHPLDEKQLAALNTEIDNIVTLPE---------- 272
Query: 196 FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 255
+ + V + D++ + + ++ ++ + LG VY ++G AA
Sbjct: 273 -LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSW-LNYVLLGKVYEMKGMNREAA 330
Query: 256 EMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 299
+ A P Y +++ S+ + ++ L +
Sbjct: 331 DAYLTAFNLRPGANTLYWIENGIFQ--TSVPYVVPYLDKFLASE 372
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 81.3 bits (200), Expect = 2e-16
Identities = 27/147 (18%), Positives = 45/147 (30%), Gaps = 13/147 (8%)
Query: 165 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK--------DRDN 216
++ A L +G+ + A +P A ++ D
Sbjct: 199 NFYQAHDYL--LHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQ 256
Query: 217 LDKAVECYQMALSIK--PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 274
L +++ N S V V+GK D + + I I ++ Y
Sbjct: 257 LAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYVL 315
Query: 275 LGVLYRDAGSISLAIDAYEQCLKIDPD 301
LG +Y G A DAY + P
Sbjct: 316 LGKVYEMKGMNREAADAYLTAFNLRPG 342
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 72.4 bits (177), Expect = 1e-13
Identities = 21/162 (12%), Positives = 42/162 (25%), Gaps = 13/162 (8%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE---ALKIDPHYAP 59
+ + + P + A A+V + L + + L + +
Sbjct: 219 SELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSI 278
Query: 60 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 119
Y V + D + ++ M Y +G +Y+ +G A Y
Sbjct: 279 IYQIKAVSALVKGKTDESYQAINTG-IDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAF 337
Query: 120 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 161
+ P + + V Y K L
Sbjct: 338 NLRPGANTLYWIENGI---------FQTSVPYVVPYLDKFLA 370
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 67.8 bits (165), Expect = 4e-12
Identities = 13/151 (8%), Positives = 35/151 (23%), Gaps = 18/151 (11%)
Query: 37 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY--------DTALGCYEKA--AL 86
+ + E ++ P + A +V +
Sbjct: 212 DKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP 271
Query: 87 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 146
E + Y V +G + + + + ++ + LG +++
Sbjct: 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSW--------LNYVLLGKVYEMK 323
Query: 147 GDINQGVAYYKKALYYNWHYADAMYNLGVAY 177
G + Y A + +
Sbjct: 324 GMNREAADAYLTAFNLRPGANTLYWIENGIF 354
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 67.4 bits (164), Expect = 5e-12
Identities = 24/160 (15%), Positives = 48/160 (30%), Gaps = 18/160 (11%)
Query: 179 EMLKFDMAIVFYELAFHFNPHCAEACNNLG-----VIYKDRDNLDKAVECYQMALSIKPN 233
+ L E PH N +++ D +L++A E + P
Sbjct: 172 KALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE 231
Query: 234 FSQSLNNLGVVYTV--------QGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAG 283
F+ + +V V + ++ A I+ + + Y V G
Sbjct: 232 FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKG 291
Query: 284 SISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 323
+ A + ++ N LL Y +G + +
Sbjct: 292 KTDESYQAINTGIDLEMSWLN---YVLLGKVYEMKGMNRE 328
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 81.9 bits (202), Expect = 1e-16
Identities = 42/290 (14%), Positives = 86/290 (29%), Gaps = 33/290 (11%)
Query: 83 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 142
K E M+AE + N G+ + A + L P + +A + LG
Sbjct: 5 KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELP--PGWFYSRIVATSVLGEV 62
Query: 143 VKLEGDINQGVAYYKKALYY-----NWHY-ADAMYNLGVAYGEMLKFDMAIVFYELAF-- 194
+ +G++ + +A ++ WHY ++ A E AF
Sbjct: 63 LHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 122
Query: 195 ------HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS-----LNNLGV 243
P + LD+A + + + ++ L L
Sbjct: 123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182
Query: 244 VYTVQGKMDAAAEMIEKAIA-------ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 296
+G +D A + + + + A + ++ G + A +
Sbjct: 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 242
Query: 297 KIDPDSR--NAGQNRLLAMNYINEGHDDK---LFEAHRDWGKRFMRLYSQ 341
K + + GQ R +A I G + + E + + +
Sbjct: 243 KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL 292
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 79.6 bits (196), Expect = 5e-16
Identities = 50/370 (13%), Positives = 95/370 (25%), Gaps = 60/370 (16%)
Query: 20 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP-----AYYNLGVVYSELMQY 74
AE A+ GN + + AL+ P A LG V +
Sbjct: 14 AEFNAL----RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGEL 69
Query: 75 DTALGCYEKAAL------ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV------- 121
+L ++ + I +G L++A E+ +
Sbjct: 70 TRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE 129
Query: 122 -SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 180
P E A L + E G+ + L
Sbjct: 130 QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ--PQQQLQCLAMLIQCSLAR 187
Query: 181 LKFDMAIVFYELAFH-------FNPHCAEACNNLGVIYKDRDNLDKAVECYQMAL----S 229
D A + + + A + ++ + A + +
Sbjct: 188 GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA 247
Query: 230 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------NPTYAEAYNNLGVLYRDAG 283
N+ + G+ + A ++E+ L LY AG
Sbjct: 248 NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 307
Query: 284 SISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG-----------HDDKLFEAHRDWG 332
S A LK+ A + + +++ EG + L E +
Sbjct: 308 RKSDAQRVLLDALKL------ANRTGFI-SHFVIEGEAMAQQLRQLIQLNTLPELEQHRA 360
Query: 333 KRFMRLYSQY 342
+R +R +Q+
Sbjct: 361 QRILREINQH 370
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 4e-16
Identities = 25/119 (21%), Positives = 46/119 (38%)
Query: 190 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 249
+ H NP A N G + + +A++ Y A+ P ++ +N YT
Sbjct: 5 HHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL 64
Query: 250 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 308
+ A + E+ I PT+ + Y + A+D Y++ L +D + A
Sbjct: 65 EFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 123
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 3e-15
Identities = 26/135 (19%), Positives = 55/135 (40%), Gaps = 7/135 (5%)
Query: 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 61
+ +H +P LA+++ + G G+ ++ Y EA+K +P A Y
Sbjct: 1 MGHHHHHHSHMNPD-------LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLY 53
Query: 62 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 121
N Y++L+++ AL E+ P + + Y + D A+ Y++ L +
Sbjct: 54 SNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113
Query: 122 SPNFEIAKNNMAIAL 136
+ + A + +
Sbjct: 114 DSSCKEAADGYQRCM 128
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-12
Identities = 20/121 (16%), Positives = 43/121 (35%)
Query: 155 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 214
++ + N A + N G + + A+ Y A NP A+ +N Y
Sbjct: 4 HHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL 63
Query: 215 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 274
A++ + + ++P F + A ++ +KA+ + + EA +
Sbjct: 64 LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 123
Query: 275 L 275
Sbjct: 124 Y 124
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 3e-11
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 7/136 (5%)
Query: 81 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 140
+ + P A N G +GD A+ Y + +P +N A T L
Sbjct: 5 HHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL- 63
Query: 141 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 200
+ + ++ + + A M + A+ Y+ A + C
Sbjct: 64 ------LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC 117
Query: 201 AEACNNLGVIYKDRDN 216
EA + + N
Sbjct: 118 KEAADGYQRCMMAQYN 133
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 2e-06
Identities = 18/80 (22%), Positives = 34/80 (42%)
Query: 222 ECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 281
+ + P+ + + N G +G A + +AI NP A+ Y+N Y
Sbjct: 3 HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 62
Query: 282 AGSISLAIDAYEQCLKIDPD 301
LA+ E+C++++P
Sbjct: 63 LLEFQLALKDCEECIQLEPT 82
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 7e-16
Identities = 31/112 (27%), Positives = 53/112 (47%)
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 260
++ + G R KA++ Y ALSI P L+N Y+ G+ + AAE E
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 261 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 312
A +P Y++A++ LG+ D A +AYE+ ++ + + + R L
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 1e-14
Identities = 27/124 (21%), Positives = 43/124 (34%), Gaps = 2/124 (1%)
Query: 12 ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 71
S P E + L G + I Y +AL I P N YS
Sbjct: 1 GPRSMAPTPE--SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSAS 58
Query: 72 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 131
Q++ A E A + P Y++A+ +G+ + D + A YE+ + N
Sbjct: 59 GQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMK 118
Query: 132 MAIA 135
+
Sbjct: 119 RGLE 122
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 2e-10
Identities = 25/111 (22%), Positives = 41/111 (36%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 226
+D + + G A ++ AI Y A P +N Y +KA E ++
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 227 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 277
A + P +S++ + LG+ A E EK I A G+
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 4e-08
Identities = 21/119 (17%), Positives = 35/119 (29%), Gaps = 7/119 (5%)
Query: 58 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 117
+ + G +Y A+ Y +A P N Y G E A E
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 118 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 176
V P + A + + +A D+ D Y+K + + G+
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDM-------ADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 4e-08
Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 1/144 (0%)
Query: 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 192
+ L G + ++ + Y +AL + N AY + + A EL
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 193 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 252
A +P ++A + LG+ D + A E Y+ + + N G + T + K++
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG-LETTKRKIE 129
Query: 253 AAAEMIEKAIAANPTYAEAYNNLG 276
A E A A G
Sbjct: 130 EANRGAEPPADDVDDAAGASRGAG 153
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 2e-14
Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 7/109 (6%)
Query: 34 LKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 86
LK GN D +Q Y EA+K+DPH Y N Y++ Y A K
Sbjct: 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 66
Query: 87 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 135
+P + + Y + E A YE L N K +
Sbjct: 67 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 1e-11
Identities = 20/90 (22%), Positives = 36/90 (40%)
Query: 216 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 275
N+D A++CY A+ + P+ +N Y +G A E K + P + + Y+
Sbjct: 19 NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRK 78
Query: 276 GVLYRDAGSISLAIDAYEQCLKIDPDSRNA 305
A YE+ LK + ++
Sbjct: 79 AAALEFLNRFEEAKRTYEEGLKHEANNPQL 108
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 5e-08
Identities = 17/109 (15%), Positives = 36/109 (33%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 226
+ + G + D A+ Y A +PH +N Y + + KA E
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63
Query: 227 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 275
+ +KP++ + + + + A E+ + + L
Sbjct: 64 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 1e-05
Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 7/116 (6%)
Query: 92 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 151
G + G+++ A+ CY + + P+ + +N + A GD +
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK-------GDYQK 56
Query: 152 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL 207
K + + A + +F+ A YE + + L
Sbjct: 57 AYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 3e-14
Identities = 20/112 (17%), Positives = 35/112 (31%)
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 260
AE G Y + + AV+ Y + P ++ +N A K
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 261 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 312
AI +P + AY + A++ + D + N R +
Sbjct: 64 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 115
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 6e-14
Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 7/109 (6%)
Query: 34 LKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 86
+L G + ++ Y E +K P A Y N ++LM + A+ KA
Sbjct: 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 66
Query: 87 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 135
+ P + AY + SA+ + + I
Sbjct: 67 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 115
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-08
Identities = 16/111 (14%), Positives = 33/111 (29%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 226
A+ G Y + A+ Y P A +N + +A+
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 227 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 277
A+ PNF ++ + +A E ++ A + + +
Sbjct: 64 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-07
Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 7/120 (5%)
Query: 90 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 149
M AE G Y + D +A+ Y + +P +N A AL L
Sbjct: 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL-------MSF 54
Query: 150 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 209
+ +A KA+ + ++ A A + ++ A+ + A + + +
Sbjct: 55 PEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-06
Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 9/99 (9%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTS-LKLAGNTQDGIQKYYEALKIDPHYAPAY 61
V +Y + + P A ++ + KL + + I +A++ DP++ AY
Sbjct: 24 VKAYTEMIKRAPED-------ARGYSNRAAALAKL-MSFPEAIADCNKAIEKDPNFVRAY 75
Query: 62 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 100
+ +Y +AL + A + +
Sbjct: 76 IRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-06
Identities = 16/104 (15%), Positives = 27/104 (25%), Gaps = 7/104 (6%)
Query: 73 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 132
+ A+ Y + P A Y N AIA + + PNF A
Sbjct: 19 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK 78
Query: 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 176
A A + + + A + + +
Sbjct: 79 ATAQIAV-------KEYASALETLDAARTKDAEVNNGSSAREID 115
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 5e-13
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 248 QGKMDAAAEMIEKAIAANPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 306
QG ++ A + +E+ + P EAY +G YR G A++ Y+ ++++PDS
Sbjct: 13 QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72
Query: 307 QNRLL--AMNYINEGHDDKLFEAH 328
+++ +N+ N+ ++L H
Sbjct: 73 ARKMVMDILNFYNKDMYNQLEHHH 96
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 3e-12
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 61 YYNLGVVYSELMQYDTALGCYEKAALERPM-YAEAYCNMGVIYKNRGDLESAIACYERCL 119
+ AL E+ P+ EAY MG Y+ GD + A+ Y+ +
Sbjct: 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62
Query: 120 AVSPNFEIAKNN 131
++P+ +
Sbjct: 63 ELNPDSPALQAR 74
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 2e-11
Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 9/88 (10%)
Query: 29 DLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALE 87
L G+ ++ +Q E L+ +P AYY +G Y +L + AL Y+ A
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 88 RPMYAEAYCNMGVIYKNRGDLESAIACY 115
P R + + Y
Sbjct: 65 NPDSPALQ--------ARKMVMDILNFY 84
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 6e-11
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Query: 206 NLGVIYKDRDNLDKAVECYQMALSIKP-NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 264
++ +++ A++ + L +P ++ +G Y G A + AI
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 265 NPTYAEAYNN 274
NP
Sbjct: 65 NPDSPALQAR 74
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 3e-10
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-CAEACNNLGVIYKDRDNLDKAVECYQ 225
+ N G + A+ E P EA +G Y+ + KA+ YQ
Sbjct: 7 IKELINQG-------DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQ 59
Query: 226 MALSIKPNF 234
A+ + P+
Sbjct: 60 SAIELNPDS 68
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 1e-06
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 146 EGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 204
+GDI + ++ L +A Y +G AY ++ + A+ Y+ A NP
Sbjct: 13 QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL- 71
Query: 205 NNLGVIYKDRDNLDKAVECYQ 225
+ R + + Y
Sbjct: 72 -------QARKMVMDILNFYN 85
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 5e-06
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 97 NMGVIYKNRGDLESAIACYERCLAVSP-NFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 155
N+GD+E+A+ E L P + A M A LG D + +
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLG-------DWQKALNN 57
Query: 156 YKKALYYNWHYADA 169
Y+ A+ N
Sbjct: 58 YQSAIELNPDSPAL 71
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 6e-13
Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 7/114 (6%)
Query: 29 DLGTSLKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81
+L K GN ++ Y EA+K DP A Y N ++LM++ AL
Sbjct: 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDC 70
Query: 82 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 135
+ + + Y + A YE L V P+ E A+ +
Sbjct: 71 DTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 2e-12
Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 2/115 (1%)
Query: 195 HFNPHCAEACNNLG-VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 253
+ NP A+ N G +K D A+ Y A+ P + +N T +
Sbjct: 7 YINPELAQEEKNKGNEYFKKGD-YPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQR 65
Query: 254 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 308
A + + I + + + Y S A AYE L++DP + A +
Sbjct: 66 ALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREG 120
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 7e-08
Identities = 20/118 (16%), Positives = 37/118 (31%)
Query: 158 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 217
+ Y N A N G Y + + A+ Y A +P A +N
Sbjct: 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF 63
Query: 218 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 275
+A++ + + F + + A E A+ +P+ EA +
Sbjct: 64 QRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 4e-07
Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%)
Query: 82 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 141
+ A P A+ N G Y +GD +A+ Y + P I +N A LT L
Sbjct: 3 ARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKL-- 60
Query: 142 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA 201
+ + + + + + M ++ A YE A +P
Sbjct: 61 -----MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115
Query: 202 EACNNL 207
EA +
Sbjct: 116 EAREGV 121
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 7e-13
Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 7/111 (6%)
Query: 32 TSLKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 84
LK N ++ I+ Y +A++++P A Y N + Y Y ALG +A
Sbjct: 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 73
Query: 85 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 135
Y + Y G +A+ YE + V P+ + AK
Sbjct: 74 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 124
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 2e-12
Identities = 18/106 (16%), Positives = 38/106 (35%)
Query: 218 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 277
+ A++ Y A+ + P+ + N + Y A +AI + Y + Y
Sbjct: 30 ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89
Query: 278 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 323
G A+ YE +K+ P ++A + + ++
Sbjct: 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFER 135
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 5e-07
Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 9/151 (5%)
Query: 82 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 141
E A AE Y D E+AI Y + + ++P+ I N ++A
Sbjct: 3 EPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT-- 60
Query: 142 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA 201
+ +A+ + Y Y + + KF A+ YE PH
Sbjct: 61 -----ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 115
Query: 202 EACNNLGVIYK--DRDNLDKAVECYQMALSI 230
+A K + ++A+ + S+
Sbjct: 116 DAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 3e-05
Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 7/88 (7%)
Query: 73 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 132
Y+ A+ Y +A P A Y N + Y A+ R + + +
Sbjct: 28 DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR 87
Query: 133 AIALTDLGTKVKLEGDINQGVAYYKKAL 160
A + L G + Y+ +
Sbjct: 88 AASNMAL-------GKFRAALRDYETVV 108
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 4e-05
Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 5/130 (3%)
Query: 146 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 205
D + +Y +A+ N A N +AY + A+ A + +
Sbjct: 26 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 85
Query: 206 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 265
A+ Y+ + +KP+ + + + E+AIA +
Sbjct: 86 RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF-----ERAIAGD 140
Query: 266 PTYAEAYNNL 275
++L
Sbjct: 141 EHKRSVVDSL 150
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-11
Identities = 19/114 (16%), Positives = 40/114 (35%)
Query: 216 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 275
+A CY A++ P + N + Y + + A +A+ + +A+ L
Sbjct: 24 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83
Query: 276 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 329
G + S AI ++ + + R + + + I + E R
Sbjct: 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERR 137
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 1e-10
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 7/99 (7%)
Query: 33 SLKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 85
LK GN + Y A+ +P A Y N + Y ++ Q + AL +A
Sbjct: 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL 70
Query: 86 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124
+A+ +G + AIA +R +++
Sbjct: 71 ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 6e-06
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 7/88 (7%)
Query: 73 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 132
+Y A CY +A P+ A Y N + Y E A+A R L + A +
Sbjct: 24 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83
Query: 133 AIALTDLGTKVKLEGDINQGVAYYKKAL 160
++ ++ +A ++A
Sbjct: 84 GQCQLEM-------ESYDEAIANLQRAY 104
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 7e-06
Identities = 17/85 (20%), Positives = 30/85 (35%)
Query: 182 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 241
K+ A Y A NP A N + Y ++A+ + AL + ++ L
Sbjct: 24 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83
Query: 242 GVVYTVQGKMDAAAEMIEKAIAANP 266
G D A +++A +
Sbjct: 84 GQCQLEMESYDEAIANLQRAYSLAK 108
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 18/88 (20%), Positives = 34/88 (38%)
Query: 146 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 205
+ A Y +A+ N A N + Y +M + + A+ A + +A
Sbjct: 22 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 81
Query: 206 NLGVIYKDRDNLDKAVECYQMALSIKPN 233
LG + ++ D+A+ Q A S+
Sbjct: 82 FLGQCQLEMESYDEAIANLQRAYSLAKE 109
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 65.4 bits (158), Expect = 3e-11
Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 2/108 (1%)
Query: 25 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 84
+ + LG +T ++ + + +LG + Q A Y A
Sbjct: 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHC--LVHLGDIARYRNQTSQAESYYRHA 178
Query: 85 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 132
A P + Y + ++ ++GD + I Y R +AV F A N+
Sbjct: 179 AQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNL 226
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 57.7 bits (138), Expect = 9e-09
Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 5/123 (4%)
Query: 200 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 259
C +LG I + R+ +A Y+ A + P+ Q N L ++ + +G
Sbjct: 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYC 210
Query: 260 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 319
++IA + A NL A E K + Y+++
Sbjct: 211 RSIAVKFPFPAASTNLQKALSKALE-----SRDEVKTKWGVSDFIKAFIKFHGHVYLSKS 265
Query: 320 HDD 322
+
Sbjct: 266 LEK 268
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 56.1 bits (134), Expect = 3e-08
Identities = 26/186 (13%), Positives = 61/186 (32%), Gaps = 7/186 (3%)
Query: 134 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 193
+ + LG + + V + Y + + +LG + A +Y A
Sbjct: 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHC--LVHLGDIARYRNQTSQAESYYRHA 178
Query: 194 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 253
P + N L ++ + + + Y ++++K F + NL + K
Sbjct: 179 AQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS---KALE 235
Query: 254 AAEMIEKAIAANPTYAEAYNNLGVLYR--DAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 311
+ + ++ + G +Y +S + E+ K + +L+
Sbjct: 236 SRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKELLFQKAFNSQQLV 295
Query: 312 AMNYIN 317
+ IN
Sbjct: 296 HVTVIN 301
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 50.0 bits (118), Expect = 2e-06
Identities = 17/125 (13%), Positives = 34/125 (27%)
Query: 1 MLVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 60
+ H + P + L LG + T Y A ++ P
Sbjct: 129 ISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQP 188
Query: 61 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 120
Y L ++ S + T + Y ++ + + A N+ + +
Sbjct: 189 YNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSD 248
Query: 121 VSPNF 125
F
Sbjct: 249 FIKAF 253
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 9e-11
Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 1/131 (0%)
Query: 211 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 270
+ R +A CY A++ P + N + Y + + A +A+ + +
Sbjct: 15 FVGRK-YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK 73
Query: 271 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 330
A+ LG + S AI ++ + + R + + + I + E R
Sbjct: 74 AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRI 133
Query: 331 WGKRFMRLYSQ 341
+ + Y
Sbjct: 134 HQESELHSYLT 144
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 56.9 bits (137), Expect = 6e-09
Identities = 17/88 (19%), Positives = 33/88 (37%)
Query: 37 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 96
+ Y A+ +P A Y N + Y ++ Q + AL +A +A+
Sbjct: 17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 76
Query: 97 NMGVIYKNRGDLESAIACYERCLAVSPN 124
+G + AIA +R +++
Sbjct: 77 FLGQCQLEMESYDEAIANLQRAYSLAKE 104
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 7e-06
Identities = 17/92 (18%), Positives = 31/92 (33%)
Query: 182 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 241
K+ A Y A NP A N + Y ++A+ + AL + ++ L
Sbjct: 19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78
Query: 242 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 273
G D A +++A + +
Sbjct: 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFG 110
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 6e-05
Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 7/112 (6%)
Query: 92 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 151
A+ G A ACY R + +P + N A+ + Q
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM-------QQPEQ 56
Query: 152 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 203
+A ++AL + A + LG EM +D AI + A+
Sbjct: 57 ALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 108
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 7/88 (7%)
Query: 73 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 132
+Y A CY +A P+ A Y N + Y E A+A R L + A +
Sbjct: 19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78
Query: 133 AIALTDLGTKVKLEGDINQGVAYYKKAL 160
++ ++ +A ++A
Sbjct: 79 GQCQLEM-------ESYDEAIANLQRAY 99
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 18/94 (19%), Positives = 35/94 (37%)
Query: 146 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 205
+ A Y +A+ N A N + Y +M + + A+ A + +A
Sbjct: 17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 76
Query: 206 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 239
LG + ++ D+A+ Q A S+ +
Sbjct: 77 FLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG 110
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 1e-10
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 3/93 (3%)
Query: 216 NLDKAVECYQMALSIKPNFSQS---LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 272
+ A+ Y AL + N + D A KAI + +A
Sbjct: 43 DYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102
Query: 273 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 305
G + A+ ++C+ ++P ++
Sbjct: 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 1e-09
Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 37 AGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 93
G+ + Y +AL +D A + N + +L YD A KA + +
Sbjct: 41 CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100
Query: 94 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 132
A + G L+ A+ +RC+++ P ++ + +
Sbjct: 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 10/129 (7%)
Query: 82 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTD 138
+ A E G GD A+A Y + L + + + N A
Sbjct: 18 PRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAAC--- 74
Query: 139 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 198
+KL D ++ KA+ + A+Y A ++ + D A++ + P
Sbjct: 75 ---HLKL-EDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEP 130
Query: 199 HCAEACNNL 207
L
Sbjct: 131 KNKVFQEAL 139
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 4e-05
Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 11/101 (10%)
Query: 182 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-------DNLDKAVECYQMALSIKPNF 234
+ A+ Y A + + V++++R ++ DKA A+
Sbjct: 43 DYGGALAAYTQALGLDATPQDQA----VLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98
Query: 235 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 275
++L G++D A +++ ++ P L
Sbjct: 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 4e-05
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 10/85 (11%)
Query: 3 VASYHKALSADPSYKPAAECL---AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP 59
+A+Y +AL D + + A A LKL + + +A++ D
Sbjct: 48 LAAYTQALGLDATPQDQAVLHRNRAACH------LKL-EDYDKAETEASKAIEKDGGDVK 100
Query: 60 AYYNLGVVYSELMQYDTALGCYEKA 84
A Y +L + D A+ ++
Sbjct: 101 ALYRRSQALEKLGRLDQAVLDLQRC 125
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 3e-10
Identities = 74/507 (14%), Positives = 153/507 (30%), Gaps = 107/507 (21%)
Query: 277 VLYRDAGS--ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKR 334
++ GS +A+D CL + + + ++N + + +
Sbjct: 154 LIDGVLGSGKTWVALDV---CLSYKVQCKMDFK-----IFWLNLKNCNS----PETVLEM 201
Query: 335 FMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVV---VYS 391
+L Q + T + + HS+ + L Y+N +V V +
Sbjct: 202 LQKLLYQIDP-NWTSRSDHS-----SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 392 A-VVKA-DAK-----TIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHT 444
A A + T RF++ +D + ++ +L++
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS-MTLTPDEVKSLLLKYLDCR 314
Query: 445 ANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPET----KQKHVEELIRL 500
L P +++ I +S+ D T K + ++L +
Sbjct: 315 PQ-DLPREVLTTNPRRLSIIA---------------ESIRDGLATWDNWKHVNCDKLTTI 358
Query: 501 PECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQV-WARILCAVPNSRLV 559
E L E F F A I +L + W ++ + +V
Sbjct: 359 IESSLNVLEPAE---------YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV-MVVV 408
Query: 560 VKC-KPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM-QAYSLMDISLDTFPYA 617
K K + ++ + LE L+V L L H + Y++ TF
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLE-LKVKLENEYAL-HRSIVDHYNI----PKTFDSD 462
Query: 618 GTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASD-- 675
Y ++H +G HL E + L + D
Sbjct: 463 DLIPPYLDQY-----------FYSH-IG---------HHLKNIEHPERMTLFRMVFLDFR 501
Query: 676 --------VTALANLRMSLRDLMS-----KSPVCDGQNFALGLESTYRNMWHRYCKGDVP 722
+ N S+ + + K +CD L + + + + ++
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK-IEENLI 560
Query: 723 SLKRMEMLQQQVVSEEPSKFSEPTKII 749
K ++L+ +++E+ + F E K +
Sbjct: 561 CSKYTDLLRIALMAEDEAIFEEAHKQV 587
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 3e-10
Identities = 14/107 (13%), Positives = 33/107 (30%), Gaps = 9/107 (8%)
Query: 33 SLKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 85
K GN+ ++ + Y + + P Y N + +L +Y A+ ++
Sbjct: 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65
Query: 86 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCL-AVSPNFEIAKNN 131
+ Y+ + A+ + + V E +
Sbjct: 66 RYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELPEGYDRS 111
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 1e-08
Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 2/109 (1%)
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 260
E G + +AV CY ++ +P +N + G+ A +M ++
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63
Query: 261 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK-IDPDSRNAGQN 308
+ T + YR A+ + + + +D ++
Sbjct: 64 GLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELPEGYDRS 111
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 2e-06
Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 1/88 (1%)
Query: 73 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 132
Y A+ CY++ +P Y N + G+ AI ++ L + E
Sbjct: 19 LYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRS 78
Query: 133 AIALTDLGTKVKLEGDINQGVAYYKKAL 160
+ L G + V +
Sbjct: 79 KLQYR-LELAQGAVGSVQIPVVEVDELP 105
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 1e-05
Identities = 12/108 (11%), Positives = 28/108 (25%), Gaps = 1/108 (0%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 226
+ G + + + A+ Y+ P +N + +A++ Q
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63
Query: 227 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 274
L + Y A ++ + E Y+
Sbjct: 64 GLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELPEGYDR 110
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-05
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 8/102 (7%)
Query: 92 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 151
E G +G A+ CY++ + P + +N A+AL L G+ Q
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKL-------GEYTQ 56
Query: 152 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 193
+ ++ L Y + Y + A+ ++
Sbjct: 57 AIQMCQQGLRYTSTAEHVAIRSKLQY-RLELAQGAVGSVQIP 97
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 57.1 bits (137), Expect = 1e-09
Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 21/113 (18%)
Query: 44 IQKYYEALKIDPHYAPAYYNLGVVYSELMQY----------DTALGCYEKAALERPMYAE 93
Q K +P A G V EL Q+ A+ +E+A L P E
Sbjct: 22 RQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE 81
Query: 94 AYCNMGVIYKNRGDL-----------ESAIACYERCLAVSPNFEIAKNNMAIA 135
A +G Y + L + A +++ + P+ ++ +
Sbjct: 82 AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 1e-09
Identities = 20/126 (15%), Positives = 45/126 (35%), Gaps = 21/126 (16%)
Query: 177 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----------RDNLDKAVECYQM 226
+ +L F+ E + NP A+ G + + + + +A+ ++
Sbjct: 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEE 71
Query: 227 ALSIKPNFSQSLNNLGVVYTVQGKM-----------DAAAEMIEKAIAANPTYAEAYNNL 275
AL I P +++ +G YT + D A + ++A+ P +L
Sbjct: 72 ALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL 131
Query: 276 GVLYRD 281
+ +
Sbjct: 132 EMTAKA 137
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 3e-09
Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 26/138 (18%)
Query: 109 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD---INQGVAYYKKALYYNWH 165
E E +P L +L + I + + +++AL +
Sbjct: 19 EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK 78
Query: 166 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 225
+A++ +G AY AF P EA + N D A + +Q
Sbjct: 79 KDEAVWCIGNAY------------TSFAF-LTPDETEA----------KHNFDLATQFFQ 115
Query: 226 MALSIKPNFSQSLNNLGV 243
A+ +P+ + L +L +
Sbjct: 116 QAVDEQPDNTHYLKSLEM 133
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 2e-08
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 21/106 (19%)
Query: 218 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI----------EKAIAANPT 267
++ + + P + +L G V + + ++ E+A+ +P
Sbjct: 19 EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK 78
Query: 268 YAEAYNNLGVLYRDAGSI-----------SLAIDAYEQCLKIDPDS 302
EA +G Y + LA ++Q + PD+
Sbjct: 79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 9e-07
Identities = 14/124 (11%), Positives = 41/124 (33%), Gaps = 14/124 (11%)
Query: 68 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD----------LESAIACYER 117
+ ++ ++ E P+ A+ G + ++ AI +E
Sbjct: 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEE 71
Query: 118 CLAVSPNFEIAKNNMAIALTDLG----TKVKLEGDINQGVAYYKKALYYNWHYADAMYNL 173
L + P + A + A T + + + + + ++++A+ + +L
Sbjct: 72 ALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL 131
Query: 174 GVAY 177
+
Sbjct: 132 EMTA 135
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 2e-08
Identities = 26/143 (18%), Positives = 43/143 (30%), Gaps = 25/143 (17%)
Query: 74 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 133
A+ Y KA ++ + + + + A N +
Sbjct: 11 LKKAIQYYVKACELN--EMFGCLSLVSNSQI--NKQKLFQYLSK--ACELNSGNGCRFLG 64
Query: 134 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY--GEMLKFD--MAIVF 189
+ G VK D+ + YY KA N D LG G+ + + A+
Sbjct: 65 DFY-ENGKYVKK--DLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKT 119
Query: 190 YELAFHFNPHC----AEACNNLG 208
+E A C +AC L
Sbjct: 120 FEKA------CRLGSEDACGILN 136
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 2e-06
Identities = 17/86 (19%), Positives = 24/86 (27%), Gaps = 12/86 (13%)
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK-----MDAAA 255
C +L + N K + A + N LG Y GK + AA
Sbjct: 27 MFGCLSLVSNSQI--NKQKLFQYLSKA--CELNSGNGCRFLGDFY-ENGKYVKKDLRKAA 81
Query: 256 EMIEKAIAANPTYAEAYNNLGVLYRD 281
+ KA + LG
Sbjct: 82 QYYSKA--CGLNDQDGCLILGYKQYA 105
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 3e-08
Identities = 23/115 (20%), Positives = 36/115 (31%), Gaps = 16/115 (13%)
Query: 37 AGNTQDGIQKYYEALKIDPHY----------------APAYYNLGVVYSELMQYDTALGC 80
+ I KY EAL H NL Y++ Y A+
Sbjct: 51 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDH 110
Query: 81 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 135
K +A +GV G LE A + +++PN +N+ +
Sbjct: 111 ASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 165
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 4e-07
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 16/106 (15%)
Query: 216 NLDKAVECYQMALSIKPNFSQS----------------LNNLGVVYTVQGKMDAAAEMIE 259
+++A+ Y+ AL + + NL Y A +
Sbjct: 53 EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS 112
Query: 260 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 305
K + + +A LGV G + A + + ++P++ +
Sbjct: 113 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 7e-05
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 26/136 (19%)
Query: 105 RGDLESAIACYERCLAVSPNFEIAK----------------NNMAIALTDLGTKVKLEGD 148
+ ++ AI Y+ L + E N+A K + D
Sbjct: 51 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC------YNKNK-D 103
Query: 149 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 208
+ + + K L + + A+Y LGVA + A A NP+ + N+
Sbjct: 104 YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE 163
Query: 209 VI---YKDRDNLDKAV 221
+ K+ DK
Sbjct: 164 LCVNKLKEARKKDKLT 179
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 53.6 bits (128), Expect = 8e-08
Identities = 16/158 (10%), Positives = 43/158 (27%), Gaps = 19/158 (12%)
Query: 156 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF------NPHCAEACNNLGV 209
++ + Y + + + ++ I+ + + N +
Sbjct: 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIAN 163
Query: 210 IYKDRDNLDKAVECYQMALSIKPNFSQS-------LNNLGVVYTVQGKMDAAAEMIEKAI 262
IY + L K ++ ++ L + N + + + + + KAI
Sbjct: 164 IYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223
Query: 263 A------ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 294
+ + Y G R I+ +
Sbjct: 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 1e-07
Identities = 20/166 (12%), Positives = 44/166 (26%), Gaps = 13/166 (7%)
Query: 44 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA------LERPMYAEAYCN 97
K E + Y + + + Y+ + +K ++
Sbjct: 101 ELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160
Query: 98 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 157
+ IY G L+ I +E+ L + + + L+ + +
Sbjct: 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVN 220
Query: 158 KAL------YYNWHYADAMYNLGVAYGEM-LKFDMAIVFYELAFHF 196
KA+ Y G ++ + Y+ A F
Sbjct: 221 KAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 7e-04
Identities = 18/124 (14%), Positives = 35/124 (28%), Gaps = 17/124 (13%)
Query: 21 ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-------DPHYAPAYYNLGVVYSELMQ 73
+ + G + GI + + LK + YN +
Sbjct: 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR 211
Query: 74 YDTALGCYEKA------ALERPMYAEAYCNMGVIYKNRGDLESAIA-CYERCLAVSPNFE 126
Y+ +L KA + + Y G + E+ I Y++ F+
Sbjct: 212 YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF---FD 268
Query: 127 IAKN 130
I +
Sbjct: 269 ILEM 272
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 4e-07
Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 19/141 (13%)
Query: 13 DPSYKPAAECLAIVLT--DLGTSLKLAGNTQDGIQKYYEALKIDPHY------------- 57
+ + E L + GT G + + +Y + + +
Sbjct: 134 ESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQA 193
Query: 58 --APAYYNLGVVYSELMQYDTALGCYEKAALER-PMYAEAYCNMGVIYKNRGDLESAIAC 114
++ NL + + +L + A+ KA LE + G + D E A A
Sbjct: 194 LRLASHLNLAMCHLKLQAFSAAIESCNKA-LELDSNNEKGLSRRGEAHLAVNDFELARAD 252
Query: 115 YERCLAVSPNFEIAKNNMAIA 135
+++ L + PN + AK +A+
Sbjct: 253 FQKVLQLYPNNKAAKTQLAVC 273
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 1e-06
Identities = 23/142 (16%), Positives = 50/142 (35%), Gaps = 15/142 (10%)
Query: 179 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI---KPNFS 235
+ F+ A +E+ + G +Y +A+ Y+ +S + +FS
Sbjct: 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS 184
Query: 236 QS------------LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 283
NL + + AA E KA+ + + + G +
Sbjct: 185 NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVN 244
Query: 284 SISLAIDAYEQCLKIDPDSRNA 305
LA +++ L++ P+++ A
Sbjct: 245 DFELARADFQKVLQLYPNNKAA 266
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 3e-06
Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 19/167 (11%)
Query: 70 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 129
L ++ A +E + E+ + G +Y G + A+ Y++ ++
Sbjct: 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS 184
Query: 130 NNMAIALTDLGTKVKLEGDINQGVAYYK------------KALYYNWHYADAMYNLGVAY 177
N A L L N + + K KAL + + + G A+
Sbjct: 185 NEEAQKAQALRLASHL----NLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAH 240
Query: 178 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI---YKDRDNLDKAV 221
+ F++A ++ P+ A L V + + +K +
Sbjct: 241 LAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKL 287
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 4e-06
Identities = 14/100 (14%), Positives = 28/100 (28%), Gaps = 11/100 (11%)
Query: 48 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE-----------AYC 96
EA A + L + L +D AL +KA E A
Sbjct: 47 EEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVY 106
Query: 97 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 136
+ + G A+ +++ + + + +
Sbjct: 107 SRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 6e-05
Identities = 19/132 (14%), Positives = 39/132 (29%), Gaps = 32/132 (24%)
Query: 92 AEAYCNMGVIYK--NRGDLESAIACYERCLAVSPNFE------------IAKNNMAIALT 137
AY + + G+ + A A R + +S +A AL
Sbjct: 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA 68
Query: 138 DLGTKVKLEGDINQGVAYYKKALYYNWH-----------YADAMYNLGVAYGEMLKFDMA 186
L ++ + KAL+Y + A+Y+ +A + + A
Sbjct: 69 GLR-------SFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEA 121
Query: 187 IVFYELAFHFNP 198
+ ++
Sbjct: 122 MPEFKKVVEMIE 133
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 6e-06
Identities = 24/143 (16%), Positives = 46/143 (32%), Gaps = 15/143 (10%)
Query: 178 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI---KPNF 234
+ F+ A +E+ A G +Y +AV Y +S +
Sbjct: 245 VTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL 304
Query: 235 SQS------------LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 282
S+ NL + Y + A E +KA+ + + G
Sbjct: 305 SEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLM 364
Query: 283 GSISLAIDAYEQCLKIDPDSRNA 305
A +E+ L+++P ++ A
Sbjct: 365 NEFESAKGDFEKVLEVNPQNKAA 387
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 1e-04
Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 15/128 (11%)
Query: 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH---------------YAPAYYNLGV 66
A ++ + GT G + +Y + + A+ NL +
Sbjct: 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325
Query: 67 VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 126
Y +L +Y A+ C +KA + G + ESA +E+ L V+P +
Sbjct: 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385
Query: 127 IAKNNMAI 134
A+ +++
Sbjct: 386 AARLQISM 393
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 7/109 (6%)
Query: 32 TSLKLAGNT-------QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 84
LK N ++ I+ Y +A++++P A Y N + Y Y ALG +A
Sbjct: 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 66
Query: 85 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 133
Y + Y G +A+ YE + V P+ + AK
Sbjct: 67 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 115
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 21/105 (20%), Positives = 38/105 (36%)
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 260
AE Y + + A++ Y A+ + P+ + N + Y A +
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 261 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 305
AI + Y + Y G A+ YE +K+ P ++A
Sbjct: 66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA 110
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 1e-05
Identities = 21/156 (13%), Positives = 42/156 (26%), Gaps = 17/156 (10%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 226
A V + ++ A+ G + L++A++ Y+M
Sbjct: 145 PMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEM 204
Query: 227 ALSI---KPNFSQS--------------LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 269
A++ F N+ + D A +
Sbjct: 205 AIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNP 264
Query: 270 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 305
+A G + G + A D + + K PD +
Sbjct: 265 KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAI 300
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 21/131 (16%), Positives = 41/131 (31%), Gaps = 17/131 (12%)
Query: 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-----------------PAYYNL 64
A G SL ++ +Q+Y A+ P + N+
Sbjct: 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNI 236
Query: 65 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124
+L +YD A+G E +A G G ++SA + + +P+
Sbjct: 237 AACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296
Query: 125 FEIAKNNMAIA 135
+ + +
Sbjct: 297 DKAIRRELRAL 307
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 1e-05
Identities = 22/220 (10%), Positives = 46/220 (20%), Gaps = 36/220 (16%)
Query: 81 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 140
+ E Y G E A ER + +S +
Sbjct: 202 HNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFL------------- 248
Query: 141 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 200
+ +Y M V YG++ + F+
Sbjct: 249 ----------------------SLYYGLVMDEEAV-YGDLKRKYSMGEAESAEKVFSKEL 285
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 260
N + L+ + + + + + Y G +
Sbjct: 286 DLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSS 345
Query: 261 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 300
+ +P + G A +++ K
Sbjct: 346 GLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEKTSR 385
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 17/108 (15%), Positives = 27/108 (25%), Gaps = 22/108 (20%)
Query: 37 AGNTQDGIQKYYEALKIDPHY------------------APAYYNLGVVYSELMQYDTAL 78
+ ++ I Y +AL P Y N+ Y + A
Sbjct: 24 QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE 83
Query: 79 G-CYEKAALER-PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124
E L+R +A L+ A + L P
Sbjct: 84 ETSSE--VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 3e-05
Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 18/113 (15%)
Query: 216 NLDKAVECYQMALSIKPNFSQS------------------LNNLGVVYTVQGKMDAAAEM 257
+ +A++ Y+ AL+ N+ Y G + A E
Sbjct: 26 DYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET 85
Query: 258 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRL 310
+ + T +A A + A + + L+ P + + +
Sbjct: 86 SSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM 138
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 4e-05
Identities = 18/148 (12%), Positives = 40/148 (27%), Gaps = 1/148 (0%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 226
+ + + + A+ + + + + A E
Sbjct: 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLAT 65
Query: 227 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 286
+ S + Q + +E+ +AANP E L V Y G
Sbjct: 66 IPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDE 125
Query: 287 LAIDAYEQCLKIDPD-SRNAGQNRLLAM 313
A++ LK++ + + +
Sbjct: 126 EALELLWNILKVNLGAQDGEVKKTFMDI 153
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 24/210 (11%), Positives = 55/210 (26%), Gaps = 10/210 (4%)
Query: 104 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY-------Y 156
+ + YE+CL V + A L + +GD+N + Y
Sbjct: 28 QTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87
Query: 157 KKALYYNWHYADAMYNLGVAYGEML-KFDMAI-VFYELAFHFNPHCAEACNNLGVIYKDR 214
++A+ +Y Y E K++ ++ L + +
Sbjct: 88 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA 147
Query: 215 DNLDKAVECYQMAL-SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 273
+ + ++ A + + + Y A ++ E + E
Sbjct: 148 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL 207
Query: 274 NLGVLYRDAGSISLAIDAYEQCLKIDPDSR 303
+ +E+ L
Sbjct: 208 AYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 14/61 (22%), Positives = 27/61 (44%)
Query: 248 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 307
+G++ A E++ +AI A+P A ++ L G A + Q +K+ P+
Sbjct: 10 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 69
Query: 308 N 308
Sbjct: 70 Q 70
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 788 | |||
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 100.0 | |
| 3q3e_A | 631 | HMW1C-like glycosyltransferase; N-glycosylation; 2 | 100.0 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.98 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.98 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.97 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.97 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.97 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.97 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.96 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.96 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.96 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.96 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.95 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.95 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.95 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.95 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.95 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.95 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.94 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.93 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.93 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.93 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.93 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.92 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.92 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.92 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.92 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.92 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.91 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.9 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.9 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.89 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.89 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.89 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.89 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.89 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.88 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.88 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.88 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.88 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.88 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.88 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.88 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.87 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.87 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.87 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.87 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.87 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.87 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.87 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.87 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.86 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.86 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.86 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.85 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.84 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.83 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.83 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.82 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.82 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.81 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.81 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.81 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.81 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.8 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.8 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.8 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.8 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.79 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.78 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.78 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.77 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.77 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.75 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.75 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.75 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.74 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.73 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.73 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.73 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.73 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.73 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.72 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.71 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.71 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.69 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.69 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.69 | |
| 3oy2_A | 413 | Glycosyltransferase B736L; rossmann fold, GDP-mann | 99.68 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.68 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.67 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.67 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.67 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.66 | |
| 2x6q_A | 416 | Trehalose-synthase TRET; biosynthetic protein; 2.2 | 99.66 | |
| 3okp_A | 394 | GDP-mannose-dependent alpha-(1-6)-phosphatidylino | 99.66 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.65 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.64 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.64 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.64 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.63 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.63 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.62 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.61 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.6 | |
| 2gek_A | 406 | Phosphatidylinositol mannosyltransferase (PIMA); G | 99.6 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.6 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.59 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.58 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.58 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.58 | |
| 2iuy_A | 342 | Avigt4, glycosyltransferase; antibiotics, family G | 99.57 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.57 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.57 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.57 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.55 | |
| 3c48_A | 438 | Predicted glycosyltransferases; retaining glycosyl | 99.54 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.54 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.54 | |
| 2jjm_A | 394 | Glycosyl transferase, group 1 family protein; anth | 99.53 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.53 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.52 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.52 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.51 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.5 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.49 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.49 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.49 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.48 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.48 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.48 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.48 | |
| 2r60_A | 499 | Glycosyl transferase, group 1; rossmann-fold; 1.80 | 99.48 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.47 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.47 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.47 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.47 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.46 | |
| 3s28_A | 816 | Sucrose synthase 1; glycosyltransferase, sucrose m | 99.46 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.46 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.46 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.45 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.45 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.45 | |
| 3qhp_A | 166 | Type 1 capsular polysaccharide biosynthesis prote | 99.44 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.44 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.44 | |
| 2bfw_A | 200 | GLGA glycogen synthase; glycosyltransferase family | 99.43 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.42 | |
| 3fro_A | 439 | GLGA glycogen synthase; glycosyltransferase family | 99.42 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.41 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.41 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.41 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.39 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.38 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.38 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.38 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.38 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.36 | |
| 2f9f_A | 177 | First mannosyl transferase (WBAZ-1); alpha-beta pr | 99.36 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.36 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.36 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.36 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.36 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.36 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.35 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.35 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.34 | |
| 2qzs_A | 485 | Glycogen synthase; glycosyl-transferase, GT-B fold | 99.34 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.34 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.34 | |
| 2iw1_A | 374 | Lipopolysaccharide core biosynthesis protein RFAG; | 99.33 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.33 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.32 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.32 | |
| 1rzu_A | 485 | Glycogen synthase 1; glycosyl-transferase, GT-B fo | 99.32 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.32 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.31 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.31 | |
| 1f0k_A | 364 | MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pe | 99.31 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.31 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.3 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.29 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.29 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.29 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.28 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.26 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.26 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.25 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.25 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.23 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.22 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.22 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.22 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.22 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.21 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.21 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.18 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.18 | |
| 2xci_A | 374 | KDO-transferase, 3-deoxy-D-manno-2-octulosonic aci | 99.18 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.17 | |
| 3vue_A | 536 | GBSS-I, granule-bound starch synthase 1, chloropla | 99.17 | |
| 1uqt_A | 482 | Alpha, alpha-trehalose-phosphate synthase; glycosy | 99.09 | |
| 3otg_A | 412 | CALG1; calicheamicin, TDP, structural genomics, PS | 99.06 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.03 | |
| 1vgv_A | 384 | UDP-N-acetylglucosamine 2-epimerase; structural ge | 99.02 | |
| 2x0d_A | 413 | WSAF; GT4 family, transferase; HET: MSE; 2.28A {Ge | 99.0 | |
| 3beo_A | 375 | UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, a | 99.0 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.96 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.96 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.95 | |
| 3tsa_A | 391 | SPNG, NDP-rhamnosyltransferase; glycosyltransferas | 98.94 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.92 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.92 | |
| 3t5t_A | 496 | Putative glycosyltransferase; GTB fold, pseudoglyc | 98.88 | |
| 2hy7_A | 406 | Glucuronosyltransferase GUMK; glycosyltransferases | 98.86 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.86 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.83 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.83 | |
| 4fzr_A | 398 | SSFS6; structural genomics, PSI-biology, protein s | 98.82 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.82 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.81 | |
| 1v4v_A | 376 | UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, t | 98.8 | |
| 3rsc_A | 415 | CALG2; TDP, enediyne, structural genomics, PSI-2, | 98.8 | |
| 3ia7_A | 402 | CALG4; glycosysltransferase, calicheamicin, enediy | 98.8 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.78 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.77 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.77 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.75 | |
| 3s2u_A | 365 | UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape | 98.74 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.73 | |
| 3oti_A | 398 | CALG3; calicheamicin, TDP, structural genomics, PS | 98.71 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.67 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.66 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.62 | |
| 3nb0_A | 725 | Glycogen [starch] synthase isoform 2; glycogen syn | 98.61 | |
| 2o6l_A | 170 | UDP-glucuronosyltransferase 2B7; drug metabolism, | 98.55 | |
| 2iyf_A | 430 | OLED, oleandomycin glycosyltransferase; antibiotic | 98.54 | |
| 3dzc_A | 396 | UDP-N-acetylglucosamine 2-epimerase; structural ge | 98.51 | |
| 3ot5_A | 403 | UDP-N-acetylglucosamine 2-epimerase; structural ge | 98.48 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.4 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.39 | |
| 2p6p_A | 384 | Glycosyl transferase; X-RAY-diffraction,urdamycina | 98.37 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.3 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.29 | |
| 4amg_A | 400 | Snogd; transferase, polyketide biosynthesis, GT1 f | 98.28 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.26 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.24 | |
| 4hwg_A | 385 | UDP-N-acetylglucosamine 2-epimerase; ssgcid, struc | 98.22 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.2 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.18 | |
| 2iya_A | 424 | OLEI, oleandomycin glycosyltransferase; carbohydra | 98.18 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.17 | |
| 2yjn_A | 441 | ERYCIII, glycosyltransferase; transferase, cytochr | 98.14 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.12 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.03 | |
| 1iir_A | 415 | Glycosyltransferase GTFB; rossmann fold; 1.80A {Am | 98.03 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.93 | |
| 3rhz_A | 339 | GTF3, nucleotide sugar synthetase-like protein; gl | 97.88 | |
| 1rrv_A | 416 | Glycosyltransferase GTFD; GT-B, glycosyltransferas | 97.82 | |
| 3hbf_A | 454 | Flavonoid 3-O-glucosyltransferase; glycosyltransfe | 97.81 | |
| 2c1x_A | 456 | UDP-glucose flavonoid 3-O glycosyltransferase; WIN | 97.8 | |
| 3h4t_A | 404 | Glycosyltransferase GTFA, glycosyltransferase; van | 97.8 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.72 | |
| 2pq6_A | 482 | UDP-glucuronosyl/UDP-glucosyltransferase; glycosyl | 97.7 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.56 | |
| 2acv_A | 463 | Triterpene UDP-glucosyl transferase UGT71G1; glyco | 97.45 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.39 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.39 | |
| 2vch_A | 480 | Hydroquinone glucosyltransferase; glycosyltransfer | 97.24 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.09 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.94 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 96.92 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.73 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.67 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.53 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.52 | |
| 1psw_A | 348 | ADP-heptose LPS heptosyltransferase II; structural | 96.32 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.28 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 95.95 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.75 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 95.74 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.68 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 95.43 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 95.23 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.2 | |
| 3tov_A | 349 | Glycosyl transferase family 9; structural genomics | 94.97 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.86 | |
| 2gt1_A | 326 | Lipopolysaccharide heptosyltransferase-1; GT-B fol | 94.57 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.55 | |
| 3hbm_A | 282 | UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter je | 94.37 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.23 | |
| 2jzc_A | 224 | UDP-N-acetylglucosamine transferase subunit ALG13; | 94.21 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 93.8 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 93.66 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 93.31 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.2 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.16 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 92.65 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.5 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 92.39 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 91.75 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.67 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 91.59 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 91.3 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 91.19 | |
| 2gj4_A | 824 | Glycogen phosphorylase, muscle form; transferase; | 91.13 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 91.02 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 89.8 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.56 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.39 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 89.31 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 82.29 |
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-117 Score=1042.41 Aligned_cols=583 Identities=28% Similarity=0.422 Sum_probs=515.2
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003891 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 212 (788)
Q Consensus 133 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 212 (788)
+.++.++|.++..+|++++|+++|+++++++|++..+++++|.+|..+|++++|++.|+++++++|++..+++++|.++.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34556667777778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 213 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 292 (788)
Q Consensus 213 ~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 292 (788)
.+|++++|+++|+++++++|++..++.++|.+|..+|++++|++.|+++++++|+++.++.++|.+|..+|++++|.+.|
T Consensus 89 ~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~ 168 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM 168 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCChhhHH----hHHHHhhhccCCCchHHHHHHHHHHHHHhh----hc-cCCCCCCCCCCCCCCeeEeeccCC
Q 003891 293 EQCLKIDPDSRNAGQ----NRLLAMNYINEGHDDKLFEAHRDWGKRFMR----LY-SQYTSWDNTKDPERPLVIGYVSPD 363 (788)
Q Consensus 293 ~~al~l~p~~~~a~~----~~lla~~~l~~g~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~lriGyvS~d 363 (788)
++++++.|+...... .......+........ ...+++...... .. ++.....+.+.++++|||||+|+|
T Consensus 169 ~kal~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~--aia~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~klrIGyvS~d 246 (723)
T 4gyw_A 169 KKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRK--AIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSD 246 (723)
T ss_dssp HHHHHHHHHHHHTTCCCSSCTTGGGGSCCCHHHHH--HHHHHHHHHHHHHHHTTTCCCCCCCCSSTTTTTCEEEEEEESC
T ss_pred HHHHHhChhHHhhccCcccchhhhhhhhcCHHHHH--HHHHHHHHhhhhhhhcccCccccCccccccccccceeeeechh
Confidence 999998776433210 0001111111111111 122233322211 11 122223344567899999999999
Q ss_pred cccChhHHhhhhhhcccCCCceEEEEEecccc-CChhhHHHHHHHhhhCCeEEEccCC-CHHHHHHHHHhCCCcEEEeCC
Q 003891 364 YFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVK-ADAKTIRFREKVMKKGGIWRDIYGI-DEKKVAAMVREDKIDILVELT 441 (788)
Q Consensus 364 f~~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~-~D~~t~~~r~~~~~~~~~~~~~~~~-~~~~~a~~i~~d~idilvdl~ 441 (788)
|++|||++|+.+++++||+++|||++|++++. .|..+.+++.. +++|+++.++ ++.+++++|++|+|||||||+
T Consensus 247 f~~H~v~~~~~~~~~~~d~~~fei~~y~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~~~a~~i~~d~iDIlidl~ 322 (723)
T 4gyw_A 247 FGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAE----ANHFIDLSQIPCNGKAADRIHQDGIHILVNMN 322 (723)
T ss_dssp SSSSHHHHHHTTHHHHSCTTTEEEEEEESSCCCSCHHHHHHHHH----SSEEEEGGGCCCHHHHHHHHHHTTCSEEEESC
T ss_pred hccCcHHHHHHHHHHHhccCceeEEEEEcCCCCccHHHHHHHHh----hccccccccCCcHHHHHHHHHhccceeEEecc
Confidence 99999999999999999999999999998864 35555555553 5899999998 689999999999999999999
Q ss_pred CCCCCCcccccccCCCCeEEecccCCCCCCCCCccEEEecCCCCCcCccCCCccceEEcCCCccccCCCCCCC-------
Q 003891 442 GHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAG------- 514 (788)
Q Consensus 442 g~t~~~~~~~~a~r~Apvq~~~~g~~~ttg~~~~Dy~i~d~~~~p~~~~~~~~e~l~~lp~~~~~~~~~~~~~------- 514 (788)
|||.++|+.||++|||||||+|||||+|||+++|||+|+|.+++|++.+.+|||||+|||++|+|++|....|
T Consensus 323 g~t~~~r~~i~a~r~APvQv~~lG~p~TtG~~~iDY~i~D~~~~P~~~~~~ysEklirLP~~~~~~d~~~~~p~~~~~~~ 402 (723)
T 4gyw_A 323 GYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDHANMFPHLKKKAV 402 (723)
T ss_dssp SSBTTCCTHHHHTCCSSEEEECSSCSSCCCCTTCCEEEECTTTSCGGGGGGCSSEEEECSSCSCCCCHHHHCGGGSSCEE
T ss_pred CCCCCCcchhhhcCCCCceeeeccCCCCCCCCcCCEEEeCCCCCCchhhhcceeeeeeCCCccccCCccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999986321000
Q ss_pred --------------------------------------------------------------------------------
Q 003891 515 -------------------------------------------------------------------------------- 514 (788)
Q Consensus 515 -------------------------------------------------------------------------------- 514 (788)
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~ 482 (723)
T 4gyw_A 403 IDFKSNGHIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDGGDNADSSNTALNMPVIPMNTIAEAVIEMINRGQIQITIN 482 (723)
T ss_dssp ECCC---CCCSSSEEEECTTHHHHHHTSSSCEEEC-----------------CEEEECSSHHHHHHHHHHHHTCCEEEET
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence
Q ss_pred -----------------------------CCCCCCCCCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCC
Q 003891 515 -----------------------------PVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPF 565 (788)
Q Consensus 515 -----------------------------~~~~~~~~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~ 565 (788)
+.+..++|+++.|||||||+++||+|+++++|++||++||+|+|||+..+.
T Consensus 483 g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~R~~~gLp~~~v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~ 562 (723)
T 4gyw_A 483 GFSISNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPEDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPA 562 (723)
T ss_dssp TEEEEETTCHHHHCHHHHHTSSCCCSEEEEEGGGGTCCTTSEEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTG
T ss_pred ccccccccccccccccccccccccccccccchhhcCCCCCCEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEeCcH
Confidence 012345799999999999999999999999999999999999999987652
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccch
Q 003891 566 CCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 645 (788)
Q Consensus 566 ~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 645 (788)
..+.++++.++++||+++||+|.+..+ ..+|++.|+.+||+|||||||||||++|||||||||||++|.+|+||+|
T Consensus 563 ---~~~~~l~~~~~~~gi~~~r~~f~~~~~-~~~~l~~~~~~Di~LDt~p~~g~tT~~eal~~GvPvvt~~g~~~~sR~~ 638 (723)
T 4gyw_A 563 ---VGEPNIQQYAQNMGLPQNRIIFSPVAP-KEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVA 638 (723)
T ss_dssp ---GGHHHHHHHHHHTTCCGGGEEEEECCC-HHHHHHHGGGCSEEECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGTHH
T ss_pred ---HHHHHHHHHHHhcCCCcCeEEECCCCC-HHHHHHHhCCCeEEeCCCCcCCHHHHHHHHHcCCCEEEccCCCccHhHH
Confidence 456789999999999999999999987 7999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHhcCCCCCch
Q 003891 646 VSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSLK 725 (788)
Q Consensus 646 ~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~p~~~ 725 (788)
+|||+++|++|||+.|+++||++|++|++|++.|+++|++||+++.+|||||.++|+++||++|++||+|||+|++|..+
T Consensus 639 ~s~l~~~gl~e~ia~~~~~Y~~~a~~la~d~~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~~~~w~r~~~G~~p~~~ 718 (723)
T 4gyw_A 639 ASQLTCLGCLELIAKNRQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMWEHYAAGNKPDHM 718 (723)
T ss_dssp HHHHHHHTCGGGBCSSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHHHHTTCCCCCB
T ss_pred HHHHHHcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
|
| >3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-81 Score=697.97 Aligned_cols=352 Identities=17% Similarity=0.194 Sum_probs=318.1
Q ss_pred CCCCCeeEeeccCCcccChhHHhhhhhhcccCCCceEEEEEeccccCChhhHHHHHHHhhhCCeEEEccCCC----HHHH
Q 003891 350 DPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGID----EKKV 425 (788)
Q Consensus 350 ~~~~~lriGyvS~df~~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~~~~~~~~~~~~~~~~~----~~~~ 425 (788)
.++++++|||+|.+|++|+|++++.+++.+ ||++|||+||+ ++..|+.|+ + .+++|+++.+++ ++++
T Consensus 271 ~~~K~l~ig~ls~f~~~HsV~r~~~~~l~~-dR~~FEV~~Ys-~~~~D~~tr---~----~~d~f~~l~~~s~~~~~~~i 341 (631)
T 3q3e_A 271 RNNKPVMVVLLEHFHSAHSIYRTHSTSMIA-AREHFYLIGLG-SPSVDQAGQ---E----VFDEFHLVAGDNMKQKLEFI 341 (631)
T ss_dssp ETTEEEEEEECSSCCTTSHHHHHHHHHHHH-HTTTSEEEEEE-CTTSCHHHH---T----TSSEEEECCCSSHHHHHHHH
T ss_pred CCCCeEEEEEeCcccCCCcHHHHHHHHHHh-hhhcEEEEEEe-CCCCCHHHH---h----cCcEEEECCCCCccccHHHH
Confidence 457889999999999999999999999987 99999999999 777787762 2 358999999998 7899
Q ss_pred HHHHHhCCCcEEEeCCCCCCCCcccccccCCCCeEEecccCCCCCCCCCccEEEecCCCCCcCccCCCccceEEcCCCcc
Q 003891 426 AAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFL 505 (788)
Q Consensus 426 a~~i~~d~idilvdl~g~t~~~~~~~~a~r~Apvq~~~~g~~~ttg~~~~Dy~i~d~~~~p~~~~~~~~e~l~~lp~~~~ 505 (788)
+++|++|+|||||||+|||.+.++.++++|||||||+|||||+|||+++|||+|+|+.+.| .+.+|+|+|+|||++++
T Consensus 342 a~~Ir~d~IDILVdL~g~t~~~~i~~aa~RpAPVQvs~lGyp~TTGl~~iDY~i~D~~~~~--~~~~ysEklirLP~~~~ 419 (631)
T 3q3e_A 342 RSVCESNGAAIFYMPSIGMDMTTIFASNTRLAPIQAIALGHPATTHSDFIEYVIVEDDYVG--SEECFSETLLRLPKDAL 419 (631)
T ss_dssp HHHHHHHTCSEEEESCCSSSHHHHHHTTSCCSSEEEEECSSCSCCCCTTCCEEEEEGGGCC--CGGGCSSEEEEECTTSS
T ss_pred HHHHHhcCCCEEEECCCCCCchhHHHHhCCCchheEeccCCCcccCcccCCEEEeCCCCCC--cccCceeeEEECCCCcc
Confidence 9999999999999999999877777778999999999999999999999999999997665 58899999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCC--CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCC
Q 003891 506 CYTPSPEAGPVCPTPALTN--GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGL 583 (788)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~--~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi 583 (788)
||+|+...|.+. .+++++ |+|||||||+++|++|+++++|++||+++|+++||++..|. .+....++.+++.++||
T Consensus 420 ~~~p~~~~p~r~-~~~lp~~~G~v~Fg~fn~~~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~-~~g~~~~~~~~~~~~GI 497 (631)
T 3q3e_A 420 PYVPSALAPEKV-DYLLRENPEVVNIGIASTTMKLNPYFLEALKAIRDRAKVKVHFHFALGQ-SNGITHPYVERFIKSYL 497 (631)
T ss_dssp CCCCCTTCCSSC-CCCCCSCCSEEEEEEEECSTTCCHHHHHHHHHHHHHCSSEEEEEEEESS-CCGGGHHHHHHHHHHHH
T ss_pred ccCCcccCCccc-cccCCcCCCeEEEEECCccccCCHHHHHHHHHHHHhCCCcEEEEEecCC-CchhhHHHHHHHHHcCC
Confidence 999987765443 345554 69999999999999999999999999999999998642111 11334555667788999
Q ss_pred CCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccc-ccCCH
Q 003891 584 ESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHL-IAKNE 662 (788)
Q Consensus 584 ~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~-ia~~~ 662 (788)
+ +||+|.|.++ ..+|++.|+.+|||||||||+||||++|||||||||||++|+.+++|+|+|+|+++|++|| |+.|+
T Consensus 498 ~-~Rv~F~g~~p-~~e~la~y~~aDIfLDpfpy~GgtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LIA~d~ 575 (631)
T 3q3e_A 498 G-DSATAHPHSP-YHQYLRILHNCDMMVNPFPFGNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIANTV 575 (631)
T ss_dssp G-GGEEEECCCC-HHHHHHHHHTCSEEECCSSSCCSHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGEESSH
T ss_pred C-ccEEEcCCCC-HHHHHHHHhcCcEEEeCCcccCChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCcceecCCH
Confidence 8 8999999988 7999999999999999999999999999999999999999999999999999999999995 99999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHhc
Q 003891 663 DEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCK 718 (788)
Q Consensus 663 ~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 718 (788)
++|+++|++|++|+++|+++|+++++++.++++|| ++++.+|+.|+++|++|..
T Consensus 576 eeYv~~Av~La~D~~~l~~LR~~Lr~~~~~spLFd--~~~~~~e~~ye~~~~~w~~ 629 (631)
T 3q3e_A 576 DEYVERAVRLAENHQERLELRRYIIENNGLNTLFT--GDPRPMGQVFLEKLNAFLK 629 (631)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHSCCHHHHTC--SCCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhhCCCcc--hhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999 8899999999999999975
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-65 Score=593.77 Aligned_cols=551 Identities=21% Similarity=0.257 Sum_probs=471.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 146 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 225 (788)
Q Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 225 (788)
.|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++.+|++..++.++|.++..+|++++|+++|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCC
Q 003891 226 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA---GSISLAIDAYEQCLKIDPDS 302 (788)
Q Consensus 226 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~---g~~~eA~~~~~~al~l~p~~ 302 (788)
++++.+|++..++.++|.++...|++++|++.|+++++.+|++..++.+++.++..+ |++++|.+.|+++++.+|++
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999999999998
Q ss_pred hhhHHhHHHHhhhccCCCchHHHHHHHHHHHHH-hhhccCCCCCCCCCCCCCCeeEeeccCCcccChhHHhhhhhhcc--
Q 003891 303 RNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRF-MRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVY-- 379 (788)
Q Consensus 303 ~~a~~~~lla~~~l~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lriGyvS~df~~H~v~~~~~~~l~~-- 379 (788)
...+..+. ..+.+......+.|..+. .....+ ..+++..+++++||||++++|..|+++.++..+++.
T Consensus 162 ~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~rI~~~~~~~~~~g~~~~~~~l~~~L~ 232 (568)
T 2vsy_A 162 VEPFAFLS-------EDASAAEQLACARTRAQAIAASVRP--LAPTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQ 232 (568)
T ss_dssp SCHHHHTT-------SCCCHHHHHHHHHHHHHHHHTTCCC--CCCCCCCSSSCEEEEEEESCSSSSHHHHHHHHHHHHHH
T ss_pred cChHHHhC-------CCCHHHHHHHHHHHHHhccCcccCC--CCCCCCCCCCCeEEEEECcccccChHHHHHHHHHhhcc
Confidence 87654321 334444444445555433 222222 122334467899999999999999999999999999
Q ss_pred cCCCceEEEEEecccc-CChhhHHHHHHHhhhCCeEEEccCCCHHHHHHHHHhCCCcEEEeCCCCCCCCcccccccCCCC
Q 003891 380 HDYQNYKVVVYSAVVK-ADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAP 458 (788)
Q Consensus 380 ~dr~~fev~~Y~~~~~-~D~~t~~~r~~~~~~~~~~~~~~~~~~~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~Ap 458 (788)
+++.+|||++|+.++. .+..+.+++. .. .|+.+..++..++.+.|+++++||+++..||+.++++.+++.|++|
T Consensus 233 ~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~l~~~i~~~~~Div~~~~~~~~~~~~~~~~~~~~~ 307 (568)
T 2vsy_A 233 RRQPDLQMHLFATSGDDGSTLRTRLAQ----AS-TLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAP 307 (568)
T ss_dssp HHCTTEEEEEEESSCCCSCHHHHHHHH----TS-EEEECTTCCHHHHHHHHHHTTCSEEEECSSCTTCSSCHHHHTCCSS
T ss_pred CCcccEEEEEEECCCCCccHHHHHHHh----cC-eEEECCCCCHHHHHHHHHhCCCCEEEECCCCCCcchHHHHhcCCCc
Confidence 9999999999998653 3555555544 23 6888888888999999999999999999999999999999999999
Q ss_pred eEEecccCCCCCCCCCccEEEecCCCCCcCccCCCccceEEcCCCccccCCCCCCC-----CCCCCCCCCCCCeEEEecC
Q 003891 459 VQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAG-----PVCPTPALTNGFITFGSFN 533 (788)
Q Consensus 459 vq~~~~g~~~ttg~~~~Dy~i~d~~~~p~~~~~~~~e~l~~lp~~~~~~~~~~~~~-----~~~~~~~~~~~~~~f~~~~ 533 (788)
+|++|+|||.|+|++.+||+++|.++.|.+....|.|++..+|+ +|.|.+..+ +.+...+++++.++|++.+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~i~~ipn---~~~~~~~~~~~~~~~~r~~~~~~~~~~v~~~g~ 384 (568)
T 2vsy_A 308 VQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQG---AFQPSDTSRVVAEPPSRTQCGLPEQGVVLCCFN 384 (568)
T ss_dssp EEEEESSSSSCCCCTTCCEEEECTTTSCTTTGGGCSSEEEECSS---CSCCCCTTCCCCCCCCTGGGTCCTTSCEEEECC
T ss_pred eeEeeecCCcccCCCCceEEEECCCcCCcccccCCcceeEcCCC---cCCCCCCCCCCCCCCCccccCCCCCCEEEEeCC
Confidence 99999999999999999999999999998888889999999998 455543222 2233346778888888877
Q ss_pred CCCcCCHHHHHHHHHHHhHcCCcEEEEec-CCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeec
Q 003891 534 NLAKITPKVLQVWARILCAVPNSRLVVKC-KPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLD 612 (788)
Q Consensus 534 ~~~K~~~~~~~~~~~il~~~p~~~l~l~~-~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld 612 (788)
...|..+.++++|.+|++..|+++|+|+| .| +.++.+++.++++|++++||+|+|.++ .+++...|+.+||||+
T Consensus 385 ~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~g----~~~~~l~~~~~~~~l~~~~v~~~g~~~-~~~~~~~~~~adv~v~ 459 (568)
T 2vsy_A 385 NSYKLNPQSMARMLAVLREVPDSVLWLLSGPG----EADARLRAFAHAQGVDAQRLVFMPKLP-HPQYLARYRHADLFLD 459 (568)
T ss_dssp CGGGCCHHHHHHHHHHHHHCTTCEEEEECCST----THHHHHHHHHHHTTCCGGGEEEECCCC-HHHHHHHGGGCSEEEC
T ss_pred ccccCCHHHHHHHHHHHHhCCCcEEEEecCCH----HHHHHHHHHHHHcCCChhHEEeeCCCC-HHHHHHHHhcCCEEee
Confidence 66799999999999999999999999999 55 678899999999999878999999987 6789999999999999
Q ss_pred CCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Q 003891 613 TFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSK 692 (788)
Q Consensus 613 ~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~ 692 (788)
|+++++|+|++|||+||+|||+++|..+.++++++++..+|++|+|.+|+++|++.+.+|++|++.++.|+++.++++..
T Consensus 460 ps~~~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~ 539 (568)
T 2vsy_A 460 THPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRA 539 (568)
T ss_dssp CSSSCCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBCSSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCCChhhhcCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhc
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999988755
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhc
Q 003891 693 SPVCDGQNFALGLESTYRNMWHRYCK 718 (788)
Q Consensus 693 ~~~~~~~~~~~~~e~~~~~~~~~~~~ 718 (788)
...|+++.+++.++++|+++|++||+
T Consensus 540 ~~~f~~~~~~~~~~~~y~~~~~~~~~ 565 (568)
T 2vsy_A 540 SGVFHMDGFADDFGALLQALARRHGW 565 (568)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 67799999999999999999999986
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=299.98 Aligned_cols=320 Identities=26% Similarity=0.420 Sum_probs=239.9
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHH---------------------------HHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 003891 2 LVASYHKALSADPSYKPAAECLAIV---------------------------LTDLGTSLKLAGNTQDGIQKYYEALKID 54 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~---------------------------l~~lg~~~~~~g~~~~A~~~~~~al~~~ 54 (788)
|++.|+++++.+|++..++..++.+ ++.+|.++...|++++|+..|+++++.+
T Consensus 18 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 97 (388)
T 1w3b_A 18 AERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK 97 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 5666777777777776654333322 4445556666666666666666666666
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 003891 55 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 134 (788)
Q Consensus 55 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 134 (788)
|++..++..+|.++...|++++|+..|+++++.+|+...++..+|.++...|++++|++.|+++++..|++...+.
T Consensus 98 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---- 173 (388)
T 1w3b_A 98 PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWS---- 173 (388)
T ss_dssp TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHH----
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH----
Confidence 6666666666666666666666666666666666666666666666666666666666666666666666554333
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 003891 135 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 214 (788)
Q Consensus 135 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 214 (788)
.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+|++..++.++|.++...
T Consensus 174 ---~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 250 (388)
T 1w3b_A 174 ---NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ 250 (388)
T ss_dssp ---HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHc
Confidence 34455555678888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 215 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 294 (788)
Q Consensus 215 g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 294 (788)
|++++|+..|+++++.+|+++.++..+|.++...|++++|++.|+++++..|+++.++..+|.++...|++++|+..|++
T Consensus 251 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (388)
T 1w3b_A 251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330 (388)
T ss_dssp TCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHH
Q 003891 295 CLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 330 (788)
Q Consensus 295 al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~ 330 (788)
+++++|++..++.+ ++..+...|+.+++.+.+++
T Consensus 331 al~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 331 ALEVFPEFAAAHSN--LASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp HTTSCTTCHHHHHH--HHHHHHTTTCCHHHHHHHHH
T ss_pred HHhcCCCcHHHHHH--HHHHHHHcCCHHHHHHHHHH
Confidence 88888887777665 45666777888777765543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-32 Score=296.61 Aligned_cols=296 Identities=30% Similarity=0.417 Sum_probs=267.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 25 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 104 (788)
Q Consensus 25 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~ 104 (788)
.++..+|.++...|++++|+..++++++.+|.++.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++..
T Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 113 (388)
T 1w3b_A 34 GVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVA 113 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH
Confidence 45677888888889999999999888888888888899999999999999999999999988888888888889999999
Q ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 003891 105 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 184 (788)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 184 (788)
.|++++|++.|+++++.+|+....+.. +|.++...|++++|++.|+++++.+|++..++..+|.++...|+++
T Consensus 114 ~g~~~~A~~~~~~al~~~p~~~~~~~~-------l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 186 (388)
T 1w3b_A 114 AGDMEGAVQAYVSALQYNPDLYCVRSD-------LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW 186 (388)
T ss_dssp HSCSSHHHHHHHHHHHHCTTCTHHHHH-------HHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHH-------HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999888887655444 4555556779999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003891 185 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 264 (788)
Q Consensus 185 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~ 264 (788)
+|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++.++|.++...|++++|++.|+++++.
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 187 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHH
Q 003891 265 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 329 (788)
Q Consensus 265 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~ 329 (788)
+|+++.++..+|.++...|++++|++.|+++++++|++..++.+ ++..+...|+.+++.+..+
T Consensus 267 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~~~ 329 (388)
T 1w3b_A 267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN--LANIKREQGNIEEAVRLYR 329 (388)
T ss_dssp CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHH--HHHHHHTTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHH--HHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999888765 5667778888887766544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-29 Score=284.32 Aligned_cols=319 Identities=17% Similarity=0.189 Sum_probs=285.9
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 82 (788)
Q Consensus 3 i~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 82 (788)
...+.+++..+|++... ++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+
T Consensus 12 ~~~~~~~~~~~p~~~~~-------~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 84 (450)
T 2y4t_A 12 DLGTENLYFQSMADVEK-------HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 84 (450)
T ss_dssp -----------CHHHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccccccHHHHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34567788888877665 78888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcH---HHHHHHHHH-----HHHhhhhhhhcCCHHHHHH
Q 003891 83 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIA-----LTDLGTKVKLEGDINQGVA 154 (788)
Q Consensus 83 kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~-----l~~lg~~~~~~g~~~~A~~ 154 (788)
++++.+|++..++..+|.+|...|++++|+..|+++++.+|++. ..+..++.. +..+|..+...|++++|+.
T Consensus 85 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 85 KVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999988 777666554 5677888999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003891 155 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 234 (788)
Q Consensus 155 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 234 (788)
.|+++++..|.+..++..+|.+|...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++..|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 244 (450)
T 2y4t_A 165 FLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH 244 (450)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 235 SQSLNNL------------GVVYTVQGKMDAAAEMIEKAIAANPTYA----EAYNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 235 ~~~~~~l------------a~~~~~~g~~~eA~~~l~kal~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
...+..+ |.++...|++++|+.+|+++++..|+++ ..+..+|.++...|++++|+..+++++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 245 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9887666 9999999999999999999999999985 47889999999999999999999999999
Q ss_pred CCCChhhHHhHHHHhhhccCCCchHHHHHHHH
Q 003891 299 DPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 330 (788)
Q Consensus 299 ~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~ 330 (788)
+|++..++.. ++..+...|+.+++....++
T Consensus 325 ~p~~~~~~~~--l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 325 EPDNVNALKD--RAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp CTTCHHHHHH--HHHHHHHTTCHHHHHHHHHH
T ss_pred CcccHHHHHH--HHHHHHHhcCHHHHHHHHHH
Confidence 9999888766 56667778888877765544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.5e-29 Score=271.23 Aligned_cols=294 Identities=14% Similarity=0.175 Sum_probs=244.0
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|+..|+++++.+|++..+ ++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|
T Consensus 22 A~~~~~~~l~~~p~~~~~-------~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 94 (359)
T 3ieg_A 22 ALSQFHAAVDGDPDNYIA-------YYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDF 94 (359)
T ss_dssp HHHHHHHHHHHCTTCHHH-------HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhhCcccHHH-------HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHH
Confidence 678888888888887765 6666777777888888888888888888888888888888888888888888888
Q ss_pred HHHHHhCC---CCHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhc
Q 003891 82 EKAALERP---MYAEAYCNM------------GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 146 (788)
Q Consensus 82 ~kal~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~ 146 (788)
+++++.+| ++..++..+ |.++...|++++|+..++++++..|++...+..+ |.++...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 167 (359)
T 3ieg_A 95 KKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR-------AECFIKE 167 (359)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-------HHHHHHT
T ss_pred HHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH-------HHHHHHC
Confidence 88888888 777777666 6888888888888888888888888876554444 4444456
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHH------------HHHHHHHHc
Q 003891 147 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN------------NLGVIYKDR 214 (788)
Q Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~la~~~~~~ 214 (788)
|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|++..++. .+|.++...
T Consensus 168 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 247 (359)
T 3ieg_A 168 GEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD 247 (359)
T ss_dssp TCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 68888888888888888888888888888888888888888888888888888877554 347778888
Q ss_pred CCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 215 DNLDKAVECYQMALSIKPNFSQ----SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 290 (788)
Q Consensus 215 g~~~eA~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~ 290 (788)
|++++|+..++++++..|++.. ++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+.
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 327 (359)
T 3ieg_A 248 GRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ 327 (359)
T ss_dssp TCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888888888764 456788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhhCCCChhhHHhH
Q 003891 291 AYEQCLKIDPDSRNAGQNR 309 (788)
Q Consensus 291 ~~~~al~l~p~~~~a~~~~ 309 (788)
+|+++++++|++..++..+
T Consensus 328 ~~~~a~~~~p~~~~~~~~l 346 (359)
T 3ieg_A 328 DYEAAQEHNENDQQIREGL 346 (359)
T ss_dssp HHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHhcCCCChHHHHHH
Confidence 8888888888888776553
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.8e-29 Score=266.91 Aligned_cols=304 Identities=17% Similarity=0.200 Sum_probs=280.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 25 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 104 (788)
Q Consensus 25 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~ 104 (788)
..++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+|++..++..+|.++..
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 45888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCC---CcHHHHHHHHH-----HHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003891 105 RGDLESAIACYERCLAVSP---NFEIAKNNMAI-----ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 176 (788)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p---~~~~~~~~la~-----~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 176 (788)
.|++++|+..|+++++..| ++...+..++. .+..++.++...|++++|+..++++++..|.+..++..+|.+
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 163 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAEC 163 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 9999999999999999999 77777666543 345567888899999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH------------HHHHH
Q 003891 177 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN------------NLGVV 244 (788)
Q Consensus 177 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~------------~la~~ 244 (788)
+...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|++...+. .+|.+
T Consensus 164 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 243 (359)
T 3ieg_A 164 FIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEE 243 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988654 44888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCC
Q 003891 245 YTVQGKMDAAAEMIEKAIAANPTYAE----AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 320 (788)
Q Consensus 245 ~~~~g~~~eA~~~l~kal~~~p~~~~----~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~ 320 (788)
+...|++++|+..++++++..|+++. ++..+|.++...|++++|+..|+++++++|++..++.. ++..+...|+
T Consensus 244 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~ 321 (359)
T 3ieg_A 244 LIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKD--RAEAYLIEEM 321 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH--HHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHH--HHHHHHHcCC
Confidence 99999999999999999999999874 46679999999999999999999999999999887665 5677788888
Q ss_pred chHHHHHHHH
Q 003891 321 DDKLFEAHRD 330 (788)
Q Consensus 321 ~~~~~~~~~~ 330 (788)
.+++.+.+++
T Consensus 322 ~~~A~~~~~~ 331 (359)
T 3ieg_A 322 YDEAIQDYEA 331 (359)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887766554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=276.24 Aligned_cols=295 Identities=14% Similarity=0.187 Sum_probs=273.2
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|+..|+++++.+|++..+ ++.+|.++...|++++|+..|+++++.+|++..++..+|.+|...|++++|+..|
T Consensus 45 A~~~~~~~l~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 117 (450)
T 2y4t_A 45 ALSQFHAAVDGDPDNYIA-------YYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDF 117 (450)
T ss_dssp HHHHHHHHHHHCTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCccHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 789999999999998766 7778888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCH---HHHHHH------------HHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhc
Q 003891 82 EKAALERPMYA---EAYCNM------------GVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 146 (788)
Q Consensus 82 ~kal~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~ 146 (788)
+++++.+|.+. .++..+ |.++...|++++|+..|+++++..|.+...+..+ |.++...
T Consensus 118 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~ 190 (450)
T 2y4t_A 118 KKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELR-------AECFIKE 190 (450)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH-------HHHHHHT
T ss_pred HHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH-------HHHHHHC
Confidence 99999999988 776555 6679999999999999999999999987655554 4555557
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH------------HHHHHHc
Q 003891 147 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL------------GVIYKDR 214 (788)
Q Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------a~~~~~~ 214 (788)
|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++...|++...+..+ |.++...
T Consensus 191 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (450)
T 2y4t_A 191 GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD 270 (450)
T ss_dssp TCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7999999999999999999999999999999999999999999999999999998887766 9999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 215 DNLDKAVECYQMALSIKPNFSQ----SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 290 (788)
Q Consensus 215 g~~~eA~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~ 290 (788)
|++++|+.+|+++++..|+++. .+..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+.
T Consensus 271 g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 350 (450)
T 2y4t_A 271 GRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ 350 (450)
T ss_dssp TCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999999999854 788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChhhHHhHH
Q 003891 291 AYEQCLKIDPDSRNAGQNRL 310 (788)
Q Consensus 291 ~~~~al~l~p~~~~a~~~~l 310 (788)
.|+++++++|++..++..+.
T Consensus 351 ~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 351 DYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHhCcchHHHHHHHH
Confidence 99999999999988876654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-29 Score=266.73 Aligned_cols=291 Identities=17% Similarity=0.144 Sum_probs=265.6
Q ss_pred HHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003891 7 HKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 86 (788)
Q Consensus 7 ~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~ 86 (788)
.+.+...|++... +..+|..++..|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++
T Consensus 12 ~~~~~~~~~~~~~-------~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 84 (330)
T 3hym_B 12 PESVDGLQENLDV-------VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVD 84 (330)
T ss_dssp --------CCCTT-------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhchhhHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3455566666666 677788888999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCC
Q 003891 87 ERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH 165 (788)
Q Consensus 87 ~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 165 (788)
.+|.++.++..+|.++...| ++++|+.+|+++++.+|++...+..++. ++...|++++|+..++++++..|+
T Consensus 85 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~-------~~~~~~~~~~A~~~~~~a~~~~~~ 157 (330)
T 3hym_B 85 LYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGH-------SFAVESEHDQAMAAYFTAAQLMKG 157 (330)
T ss_dssp HCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHH-------HHHHHTCHHHHHHHHHHHHHHTTT
T ss_pred hCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHH-------HHHHccCHHHHHHHHHHHHHhccc
Confidence 99999999999999999999 9999999999999999998766555544 455567999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------CCCHH
Q 003891 166 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK---------PNFSQ 236 (788)
Q Consensus 166 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~---------p~~~~ 236 (788)
+...+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+.+++++++.. |....
T Consensus 158 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (330)
T 3hym_B 158 CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEP 237 (330)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999986 66778
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHH
Q 003891 237 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 311 (788)
Q Consensus 237 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~ll 311 (788)
++..+|.++...|++++|+.+++++++.+|++..++..+|.++..+|++++|+++|+++++++|++..++..+..
T Consensus 238 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 312 (330)
T 3hym_B 238 LLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 312 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988776443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=268.23 Aligned_cols=290 Identities=18% Similarity=0.191 Sum_probs=259.4
Q ss_pred HHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 5 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 84 (788)
Q Consensus 5 ~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ka 84 (788)
.|+++++..|+++.. .+..++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++
T Consensus 48 ~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 124 (368)
T 1fch_A 48 TYDKGYQFEEENPLR---DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRC 124 (368)
T ss_dssp HHHCCCCCCSSCTTT---TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHhcCCCCccc---chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 667777777776521 12236788999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHH---------HHHHHHhhhhhhhcCCHHHHHHH
Q 003891 85 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM---------AIALTDLGTKVKLEGDINQGVAY 155 (788)
Q Consensus 85 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---------a~~l~~lg~~~~~~g~~~~A~~~ 155 (788)
++.+|.+..++..+|.++...|++++|+..++++++..|++...+... ...+..++.++ ..|++++|+.+
T Consensus 125 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~ 203 (368)
T 1fch_A 125 LELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKEL 203 (368)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHH
Confidence 999999999999999999999999999999999999999876544311 11112344444 67899999999
Q ss_pred HHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 156 YKKALYYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 233 (788)
Q Consensus 156 ~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 233 (788)
++++++.+|. ...++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|+++++.+|+
T Consensus 204 ~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 283 (368)
T 1fch_A 204 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 283 (368)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 234 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-----------AEAYNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 234 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-----------~~~~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
+..++..+|.++...|++++|+.+|++++++.|++ ..++..+|.++..+|++++|...++++++.
T Consensus 284 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 284 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 99999999999999999999999999999998887 899999999999999999999998887764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-27 Score=275.01 Aligned_cols=275 Identities=18% Similarity=0.197 Sum_probs=191.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 106 (788)
+..+|..+...|++++|+..|+++++.+|++..++..++.++...|++++|+..++++++..|.+..++..+|.+|...|
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 387 (597)
T 2xpi_A 308 LLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN 387 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhc
Confidence 45566666677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 003891 107 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 186 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 186 (788)
++++|+++|++++++.|++...+..++ ..+...|++++|++.|+++++..|++..++..++.+|...|++++|
T Consensus 388 ~~~~A~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 388 KISEARRYFSKSSTMDPQFGPAWIGFA-------HSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777776654444333 3333455777777777777777777777777777777777777777
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 187 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNF-SQSLNNLGVVYTVQGKMDAAAEMIE 259 (788)
Q Consensus 187 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------~p~~-~~~~~~la~~~~~~g~~~eA~~~l~ 259 (788)
++.|+++++..|.+..++..+|.++.+.|++++|+++|+++++. +|+. ..++..+|.++...|++++|++.++
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 461 NEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 77777777777777777777777777777777777777777666 4443 5667777777777777777777777
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHh
Q 003891 260 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 308 (788)
Q Consensus 260 kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 308 (788)
++++.+|+++.++..++.+|...|++++|.++|+++++++|++..++..
T Consensus 541 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 589 (597)
T 2xpi_A 541 QGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDL 589 (597)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHH
Confidence 7777777777777777777777777777777777777777776665543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-29 Score=270.07 Aligned_cols=272 Identities=21% Similarity=0.193 Sum_probs=244.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~ 105 (788)
.++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|++..++..+|.+|...
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNT 146 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Confidence 37788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHH---HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc
Q 003891 106 GDLESAIACYERCLAVSPNFEIAKNNM---AIALTDLGTKVKLEGDINQGVAYYKKALYYNWH--YADAMYNLGVAYGEM 180 (788)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~~~~~l---a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~ 180 (788)
|++++|+.+|++++++.|++...+..+ +.++..+|.++...|++++|+.+|+++++.+|+ ++.++..+|.++...
T Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 226 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS 226 (365)
T ss_dssp TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC
Confidence 999999999999999998876655544 556667788889999999999999999999999 899999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 181 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 260 (788)
Q Consensus 181 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~k 260 (788)
|++++|+..|+++++.+|++..++.++|.++...|++++|+.+|+++++.+|++..++.++|.+|...|++++|+.+|++
T Consensus 227 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 306 (365)
T 4eqf_A 227 GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLT 306 (365)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003891 261 AIAANPT------------YAEAYNNLGVLYRDAGSISLAIDAYEQCLK 297 (788)
Q Consensus 261 al~~~p~------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 297 (788)
++++.|+ +..+|..++.++..+|+.+.+....++.+.
T Consensus 307 al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 307 ALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 9999876 357899999999999999999887776544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=272.49 Aligned_cols=321 Identities=14% Similarity=0.116 Sum_probs=289.7
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|++.|+++++.+|+ ..+ +..+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|
T Consensus 25 A~~~~~~al~~~p~-~~~-------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 96 (514)
T 2gw1_A 25 AIKYYNWALELKED-PVF-------YSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDL 96 (514)
T ss_dssp HHHHHHHHHHHCCC-HHH-------HHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCcc-HHH-------HHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 78999999999984 443 7778888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCC-----------------------------------------------------------------------
Q 003891 82 EKAALERPM----------------------------------------------------------------------- 90 (788)
Q Consensus 82 ~kal~~~p~----------------------------------------------------------------------- 90 (788)
+++++..|.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (514)
T 2gw1_A 97 SVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELT 176 (514)
T ss_dssp HHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCC
T ss_pred HHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHH
Confidence 999887763
Q ss_pred --------CHHHHHHHHHHHHH---CCCHHHHHHHHHHHHh-----h--CCCcHHHHHHHHHHHHHhhhhhhhcCCHHHH
Q 003891 91 --------YAEAYCNMGVIYKN---RGDLESAIACYERCLA-----V--SPNFEIAKNNMAIALTDLGTKVKLEGDINQG 152 (788)
Q Consensus 91 --------~~~~~~~la~~~~~---~g~~~~A~~~~~~al~-----~--~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A 152 (788)
+...+..+|.++.. .|++++|+..|+++++ + .|++.........++..+|.++...|++++|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 256 (514)
T 2gw1_A 177 FANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGA 256 (514)
T ss_dssp CSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHH
Confidence 26677888888876 8999999999999999 6 7777655556677888899999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003891 153 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 232 (788)
Q Consensus 153 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 232 (788)
+.+++++++.+|. ..++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..|+++++..|
T Consensus 257 ~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 335 (514)
T 2gw1_A 257 HEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335 (514)
T ss_dssp HHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS
T ss_pred HHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh----hHHh
Q 003891 233 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN----AGQN 308 (788)
Q Consensus 233 ~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~----a~~~ 308 (788)
.+..++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+.+|++++++.|++.. +...
T Consensus 336 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 415 (514)
T 2gw1_A 336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPL 415 (514)
T ss_dssp SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998866 2233
Q ss_pred HHHHhhhcc---CCCchHHHHHHHHH
Q 003891 309 RLLAMNYIN---EGHDDKLFEAHRDW 331 (788)
Q Consensus 309 ~lla~~~l~---~g~~~~~~~~~~~~ 331 (788)
..++..+.. .|+.+++....+..
T Consensus 416 ~~l~~~~~~~~~~~~~~~A~~~~~~a 441 (514)
T 2gw1_A 416 VGKATLLTRNPTVENFIEATNLLEKA 441 (514)
T ss_dssp HHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence 446777777 78877777655543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.2e-28 Score=275.84 Aligned_cols=288 Identities=18% Similarity=0.231 Sum_probs=267.2
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003891 20 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 99 (788)
Q Consensus 20 ~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la 99 (788)
....+..++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++..++..+|
T Consensus 21 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 100 (537)
T 3fp2_A 21 RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCHHHHHHHH----------------------------------------------------------------
Q 003891 100 VIYKNRGDLESAIACY---------------------------------------------------------------- 115 (788)
Q Consensus 100 ~~~~~~g~~~~A~~~~---------------------------------------------------------------- 115 (788)
.++...|++++|+..|
T Consensus 101 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 9999999888887655
Q ss_pred ---------------------------------------------HHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHH
Q 003891 116 ---------------------------------------------ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN 150 (788)
Q Consensus 116 ---------------------------------------------~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~ 150 (788)
+++++.+|++...+..++.++..+|.++...|+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 33444566666666677888999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 151 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 230 (788)
Q Consensus 151 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 230 (788)
+|+..++++++.+|+ ..++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++.
T Consensus 261 ~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 261 DAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHh
Q 003891 231 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 308 (788)
Q Consensus 231 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 308 (788)
+|++..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++++.|++...+..
T Consensus 340 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 340 NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887665443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=273.32 Aligned_cols=314 Identities=16% Similarity=0.183 Sum_probs=278.9
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|++.|+++++.+|++..+ +..+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|
T Consensus 44 A~~~~~~al~~~p~~~~~-------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 116 (537)
T 3fp2_A 44 AIKYYQYAIELDPNEPVF-------YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL 116 (537)
T ss_dssp CHHHHHHHHHHCTTCHHH-------HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCcHH-------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 789999999999999876 7777888888899999999999999999999999999999999999988887755
Q ss_pred H-------------------------------------------------------------------------------
Q 003891 82 E------------------------------------------------------------------------------- 82 (788)
Q Consensus 82 ~------------------------------------------------------------------------------- 82 (788)
+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (537)
T 3fp2_A 117 SVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALL 196 (537)
T ss_dssp HHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHH
T ss_pred HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHH
Confidence 2
Q ss_pred ------------------------------HHHHhCCCCHH-------HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Q 003891 83 ------------------------------KAALERPMYAE-------AYCNMGVIYKNRGDLESAIACYERCLAVSPNF 125 (788)
Q Consensus 83 ------------------------------kal~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 125 (788)
++++.+|++.. ++..+|.++...|++++|+..|+++++.+|+
T Consensus 197 ~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~- 275 (537)
T 3fp2_A 197 SDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT- 275 (537)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-
Confidence 23344566533 5788899999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHH
Q 003891 126 EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 205 (788)
Q Consensus 126 ~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 205 (788)
.. ++..+|.++...|++++|+.+++++++.+|++..++..+|.++...|++++|+..++++++.+|++..++.
T Consensus 276 ~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 348 (537)
T 3fp2_A 276 PN-------SYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYI 348 (537)
T ss_dssp HH-------HHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHH
T ss_pred ch-------HHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 43 34556777777899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHH
Q 003891 206 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA------EAYNNLGVLY 279 (788)
Q Consensus 206 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~------~~~~~la~~~ 279 (788)
.+|.++...|++++|+.+++++++..|++..++..+|.++...|++++|+..|+++++..|++. ..+..+|.++
T Consensus 349 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~ 428 (537)
T 3fp2_A 349 QLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATIL 428 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999876553 3466778999
Q ss_pred HHc----------CCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHHHH
Q 003891 280 RDA----------GSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWG 332 (788)
Q Consensus 280 ~~~----------g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~~~ 332 (788)
... |++++|+.+|+++++++|++..++.+ ++..|...|+.+++.+.+++..
T Consensus 429 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 429 ARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIG--LAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp HHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHH--HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHhccHHHHHHHHHHHH
Confidence 999 99999999999999999999887655 6777888899888777655433
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-27 Score=251.76 Aligned_cols=271 Identities=15% Similarity=0.169 Sum_probs=251.3
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM-QYDTALGC 80 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~ 80 (788)
|++.|+++++.+|.+... +..++.++...|++++|+..++++++.+|+++.+++.+|.++...| ++++|+.+
T Consensus 41 A~~~~~~~l~~~p~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~ 113 (330)
T 3hym_B 41 CYKLTSVVMEKDPFHASC-------LPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRY 113 (330)
T ss_dssp HHHHHHHHHHHCTTCTTT-------HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCChhh-------HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 789999999999999887 4555666778899999999999999999999999999999999999 99999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHH
Q 003891 81 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 160 (788)
Q Consensus 81 ~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al 160 (788)
|+++++.+|.+..++..+|.++...|++++|+..++++++..|++...+.. +|.++...|++++|+.++++++
T Consensus 114 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-------l~~~~~~~~~~~~A~~~~~~al 186 (330)
T 3hym_B 114 LSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY-------IGLEYGLTNNSKLAERFFSQAL 186 (330)
T ss_dssp HHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHH-------HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHH-------HHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999997655544 4555556779999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 003891 161 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN---------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 231 (788)
Q Consensus 161 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 231 (788)
+.+|++..++..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|+.+|+++++.+
T Consensus 187 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 266 (330)
T 3hym_B 187 SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266 (330)
T ss_dssp TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999985 6668899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHH
Q 003891 232 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY-RDAGSIS 286 (788)
Q Consensus 232 p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~-~~~g~~~ 286 (788)
|++..++..+|.++...|++++|+++++++++++|+++.++..++.++ ...|+.+
T Consensus 267 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 267 PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999999999999999999999999999999999999999999998 5566643
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-28 Score=262.14 Aligned_cols=294 Identities=21% Similarity=0.268 Sum_probs=252.2
Q ss_pred HHHHHcCChHHHHH-HHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 003891 32 TSLKLAGNTQDGIQ-KYYEALKIDPHY----APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106 (788)
Q Consensus 32 ~~~~~~g~~~~A~~-~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 106 (788)
.++...|++++|+. .|+++++..|++ ...++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|
T Consensus 33 ~~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 33 EAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp -------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc
Confidence 35667799999999 999999988876 4569999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHH---------------
Q 003891 107 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY--------------- 171 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--------------- 171 (788)
++++|+..|+++++++|++...+..+ |.++...|++++|+..++++++..|++...+.
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMAL-------AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSK 185 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHH-------HHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHH
Confidence 99999999999999999987655554 45555577999999999999999998876654
Q ss_pred -HHHHHHHHcCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 003891 172 -NLGVAYGEMLKFDMAIVFYELAFHFNPH--CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 248 (788)
Q Consensus 172 -~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 248 (788)
.++.++ ..|++++|+..++++++.+|. +..++..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...
T Consensus 186 ~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 264 (368)
T 1fch_A 186 RILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANG 264 (368)
T ss_dssp CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc
Confidence 466666 999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----------hhhHHhHHHHhhhcc
Q 003891 249 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS-----------RNAGQNRLLAMNYIN 317 (788)
Q Consensus 249 g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~-----------~~a~~~~lla~~~l~ 317 (788)
|++++|+..|+++++++|++..++..+|.+|..+|++++|+.+|++++++.|++ ..++.+ ++..+..
T Consensus 265 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~ 342 (368)
T 1fch_A 265 NQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWST--LRLALSM 342 (368)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHH--HHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHH--HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988 555544 5666777
Q ss_pred CCCchHHHHHHHHHHHHH
Q 003891 318 EGHDDKLFEAHRDWGKRF 335 (788)
Q Consensus 318 ~g~~~~~~~~~~~~~~~~ 335 (788)
.|+.+++....++-...+
T Consensus 343 ~g~~~~A~~~~~~~l~~~ 360 (368)
T 1fch_A 343 LGQSDAYGAADARDLSTL 360 (368)
T ss_dssp HTCGGGHHHHHTTCHHHH
T ss_pred hCChHhHHHhHHHHHHHH
Confidence 788777766554433333
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-27 Score=251.96 Aligned_cols=277 Identities=19% Similarity=0.207 Sum_probs=253.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~ 105 (788)
.++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|.+..++..+|.++...
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 102 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHc
Confidence 37788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHH------HHHHHh-hh-hhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003891 106 GDLESAIACYERCLAVSPNFEIAKNNMA------IALTDL-GT-KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY 177 (788)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~~~~~la------~~l~~l-g~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 177 (788)
|++++|+..++++++..|++...+..+. .....+ +. ++...|++++|+.+++++++..|.+..++..+|.++
T Consensus 103 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 182 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLY 182 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 9999999999999999998765443331 111122 33 477788999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003891 178 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 257 (788)
Q Consensus 178 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 257 (788)
...|++++|+..++++++.+|++..++..+|.++...|++++|+.+|+++++..|++..++..+|.++...|++++|++.
T Consensus 183 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 262 (327)
T 3cv0_A 183 NLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQ 262 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003891 258 IEKAIAANPT------------YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302 (788)
Q Consensus 258 l~kal~~~p~------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 302 (788)
++++++..|+ +..++..++.++..+|++++|...++++++..|+.
T Consensus 263 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 263 LVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred HHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 9999999999 79999999999999999999999999988876653
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-27 Score=267.61 Aligned_cols=313 Identities=17% Similarity=0.134 Sum_probs=274.6
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------------------------
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------------------------ 57 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------------------------ 57 (788)
|++.|+++++.+|++..+ ++.+|.++...|++++|+..|+++++..|.+
T Consensus 58 A~~~~~~al~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 130 (514)
T 2gw1_A 58 VVEMSTKALELKPDYSKV-------LLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKF 130 (514)
T ss_dssp HHHHHHHHHHHCSCCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHhccChHHHHH-------HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999877 6777888888999999999999998887632
Q ss_pred -------------------------------------------------------HHHHHHHHHHHHH---cCCHHHHHH
Q 003891 58 -------------------------------------------------------APAYYNLGVVYSE---LMQYDTALG 79 (788)
Q Consensus 58 -------------------------------------------------------~~~~~~lg~~~~~---~g~~~~A~~ 79 (788)
...++.+|.+++. .|++++|+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 210 (514)
T 2gw1_A 131 GDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADE 210 (514)
T ss_dssp --------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHH
T ss_pred HHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHH
Confidence 6677888888776 899999999
Q ss_pred HHHHHHH-----h--C-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhh
Q 003891 80 CYEKAAL-----E--R-------PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 145 (788)
Q Consensus 80 ~~~kal~-----~--~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~ 145 (788)
.|+++++ . + |....++..+|.++...|++++|+..++++++..|+ ...+ ..+|.++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~-------~~l~~~~~~ 282 (514)
T 2gw1_A 211 SFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSY-------IYMALIMAD 282 (514)
T ss_dssp HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHH-------HHHHHHHHT
T ss_pred HHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHH-------HHHHHHHHH
Confidence 9999998 5 3 445678999999999999999999999999999998 5444 445555666
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 146 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 225 (788)
Q Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 225 (788)
.|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.+++
T Consensus 283 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 362 (514)
T 2gw1_A 283 RNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFS 362 (514)
T ss_dssp SSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH---cCCHHHHHHHHHHHH
Q 003891 226 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE------AYNNLGVLYRD---AGSISLAIDAYEQCL 296 (788)
Q Consensus 226 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~------~~~~la~~~~~---~g~~~eA~~~~~~al 296 (788)
++++..|++..++..+|.++...|++++|+.+++++++..|++.. ++..+|.++.. .|++++|+..|++++
T Consensus 363 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~ 442 (514)
T 2gw1_A 363 EAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKAS 442 (514)
T ss_dssp HHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888754 89999999999 999999999999999
Q ss_pred hhCCCChhhHHhHHHHhhhccCCCchHHHHHHHHH
Q 003891 297 KIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDW 331 (788)
Q Consensus 297 ~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~~ 331 (788)
+++|++..++.. ++..|...|+.+++.+.+++.
T Consensus 443 ~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 443 KLDPRSEQAKIG--LAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHCTTCHHHHHH--HHHHHHHTTCHHHHHHHHHHH
T ss_pred HhCcccHHHHHH--HHHHHHHhcCHHHHHHHHHHH
Confidence 999998877654 677778888888877665543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.6e-26 Score=262.00 Aligned_cols=300 Identities=19% Similarity=0.144 Sum_probs=249.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH-------------------------------------------
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA------------------------------------------- 60 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~------------------------------------------- 60 (788)
+.+++.+|..+...|++++|++.|+++++.+|++..+
T Consensus 200 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 279 (597)
T 2xpi_A 200 ASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHH
Confidence 5568899999999999999999999999988876554
Q ss_pred ----------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Q 003891 61 ----------------------------YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 112 (788)
Q Consensus 61 ----------------------------~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~ 112 (788)
+..++.+|...|++++|+..|+++++.+|.+..++..++.++...|++++|+
T Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 359 (597)
T 2xpi_A 280 NKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLY 359 (597)
T ss_dssp CTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHH
T ss_pred HHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHH
Confidence 4445555556666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003891 113 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 192 (788)
Q Consensus 113 ~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 192 (788)
..++++++..|++... +..++..+...|++++|+++|+++++.+|.+..++..++.+|...|++++|++.|++
T Consensus 360 ~~~~~~~~~~~~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 360 LISNDLVDRHPEKAVT-------WLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp HHHHHHHHHCTTSHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhhCcccHHH-------HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666666665443 344556666778999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC
Q 003891 193 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------NP 266 (788)
Q Consensus 193 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~------~p 266 (788)
+++..|++..++..+|.+|...|++++|+++|+++++..|.++.++..+|.++...|++++|++.|+++++. +|
T Consensus 433 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p 512 (597)
T 2xpi_A 433 AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE 512 (597)
T ss_dssp HHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCS
T ss_pred HHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccch
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 56
Q ss_pred CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHHHH
Q 003891 267 TY-AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWG 332 (788)
Q Consensus 267 ~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~~~ 332 (788)
+. ..++..+|.+|...|++++|++.|+++++++|++..++.. ++..|...|+.+++.+..++..
T Consensus 513 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~l 577 (597)
T 2xpi_A 513 KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTA--IALVYLHKKIPGLAITHLHESL 577 (597)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHH--HHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHH--HHHHHHHhCCHHHHHHHHHHHH
Confidence 64 7899999999999999999999999999999998877655 5677788888888776655433
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-27 Score=255.15 Aligned_cols=252 Identities=19% Similarity=0.257 Sum_probs=220.5
Q ss_pred HHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003891 45 QKYYEALKIDPHY----APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 120 (788)
Q Consensus 45 ~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 120 (788)
..+.+.+...+.+ ...++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 127 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE 127 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4445544444444 445999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHH----------HHHHHHHcCChHHHHHHH
Q 003891 121 VSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN----------LGVAYGEMLKFDMAIVFY 190 (788)
Q Consensus 121 ~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------la~~~~~~g~~~~A~~~~ 190 (788)
++|++...+..+ |.++...|++++|+.+|+++++..|++...+.. +|.++...|++++|+..|
T Consensus 128 ~~p~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (365)
T 4eqf_A 128 LQPNNLKALMAL-------AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELY 200 (365)
T ss_dssp HCTTCHHHHHHH-------HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHH
T ss_pred cCCCCHHHHHHH-------HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHH
Confidence 999987655554 555555779999999999999999876665554 499999999999999999
Q ss_pred HHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 003891 191 ELAFHFNPH--CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 268 (788)
Q Consensus 191 ~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 268 (788)
+++++.+|. ++.++..+|.++...|++++|+.+|+++++..|+++.++..+|.++...|++++|+..|+++++++|++
T Consensus 201 ~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 280 (365)
T 4eqf_A 201 LEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF 280 (365)
T ss_dssp HHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 999999999 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 003891 269 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 303 (788)
Q Consensus 269 ~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~ 303 (788)
+.++..+|.+|..+|++++|+.+|+++++++|++.
T Consensus 281 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 315 (365)
T 4eqf_A 281 IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSR 315 (365)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccC
Confidence 99999999999999999999999999999998853
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=9.7e-27 Score=253.73 Aligned_cols=247 Identities=12% Similarity=0.075 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ-YDTALGCYEKAALERPMYAEAYCNMGVIYKN 104 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~kal~~~p~~~~~~~~la~~~~~ 104 (788)
++..+|.++...|++++|+..|+++++++|++..+|+++|.++..+|+ +++|+.+|+++++++|++..+|+++|.++..
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~ 178 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW 178 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 355556666666666666666666666666666666666666666665 6666666666666666666666666666666
Q ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCh
Q 003891 105 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE-MLKF 183 (788)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~ 183 (788)
+|++++|+..|+++++++|++..++.+++.++..+ |++++|+.+|+++++++|++..+|+++|.++.. .|..
T Consensus 179 ~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~-------g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 179 LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF-------KLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-------TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSC
T ss_pred ccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc-------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcc
Confidence 66666666666666666666655555444444443 356666666666666666666666666666666 3333
Q ss_pred HHH-----HHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-------
Q 003891 184 DMA-----IVFYELAFHFNPHCAEACNNLGVIYKDRD--NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG------- 249 (788)
Q Consensus 184 ~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g------- 249 (788)
++| +.+|++++.++|++..+|++++.++...| ++++|++.++++ +.+|++..++..+|.+|..+|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 555 35555566666655556655555555555 455555555555 555555555555555555542
Q ss_pred --CHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHH
Q 003891 250 --KMDAAAEMIEKA-IAANPTYAEAYNNLGVLYR 280 (788)
Q Consensus 250 --~~~eA~~~l~ka-l~~~p~~~~~~~~la~~~~ 280 (788)
.+++|+++|+++ ++++|.....|..++..+.
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 135555555555 5555555555555555444
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=253.59 Aligned_cols=253 Identities=11% Similarity=0.046 Sum_probs=234.8
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhhCCCcHHHH
Q 003891 51 LKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD-LESAIACYERCLAVSPNFEIAK 129 (788)
Q Consensus 51 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~ 129 (788)
+..+|++..++..+|.++...|++++|+..|+++++++|++..+|+++|.++..+|+ +++|+..|+++++++|++..++
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~ 169 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 169 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 455777889999999999999999999999999999999999999999999999997 9999999999999999998877
Q ss_pred HHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003891 130 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 209 (788)
Q Consensus 130 ~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 209 (788)
.+++.++.. .|++++|+..|+++++++|++..+|+++|.++..+|++++|+..|+++++++|++..+|+++|.
T Consensus 170 ~~~g~~~~~-------~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~ 242 (382)
T 2h6f_A 170 HHRRVLVEW-------LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF 242 (382)
T ss_dssp HHHHHHHHH-------HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHH-------ccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 777666666 4599999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-cCCHHHH-----HHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 210 IYKD-RDNLDKA-----VECYQMALSIKPNFSQSLNNLGVVYTVQG--KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 281 (788)
Q Consensus 210 ~~~~-~g~~~eA-----~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~ 281 (788)
++.. .|..++| +.+|++++.++|++..+|++++.++...| ++++|++.++++ +.+|++..++..+|.+|.+
T Consensus 243 ~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~ 321 (382)
T 2h6f_A 243 VISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYED 321 (382)
T ss_dssp HHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHH
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHH
Confidence 9999 5665888 59999999999999999999999999988 699999999998 9999999999999999999
Q ss_pred cC---------CHHHHHHHHHHH-HhhCCCChhhHHhHHH
Q 003891 282 AG---------SISLAIDAYEQC-LKIDPDSRNAGQNRLL 311 (788)
Q Consensus 282 ~g---------~~~eA~~~~~~a-l~l~p~~~~a~~~~ll 311 (788)
+| .+++|+++|+++ ++++|.....|..+..
T Consensus 322 ~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 322 MLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGR 361 (382)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 85 359999999999 9999998888776543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-25 Score=252.14 Aligned_cols=300 Identities=16% Similarity=0.128 Sum_probs=252.5
Q ss_pred HHHHHHHHHHcCCCCh--hhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHc
Q 003891 2 LVASYHKALSADPSYK--PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSEL 71 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~--~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~ 71 (788)
|++.|++++++.+... ......+.++.++|.+|...|++++|+.+|++++++ .+..+.++..+|.++...
T Consensus 70 Al~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 149 (472)
T 4g1t_A 70 ALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKC 149 (472)
T ss_dssp HHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHH
Confidence 7899999998733211 111123455888999999999999999999999987 345678899999888765
Q ss_pred --CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhc
Q 003891 72 --MQYDTALGCYEKAALERPMYAEAYCNMGVIYK---NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 146 (788)
Q Consensus 72 --g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~ 146 (788)
++|++|+.+|+++++++|+++.++..++.++. ..++.++|++.++++++++|++...+..++..+..+ +...
T Consensus 150 ~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~---~~~~ 226 (472)
T 4g1t_A 150 GGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKM---REEG 226 (472)
T ss_dssp CTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHC---C---
T ss_pred ccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHH---Hhhh
Confidence 47999999999999999999999999998855 467889999999999999999988877776655443 4556
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc------------
Q 003891 147 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR------------ 214 (788)
Q Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------------ 214 (788)
+++++|++++++++..+|....++..+|.+|...|++++|+..++++++.+|++..++.++|.+|...
T Consensus 227 ~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~ 306 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306 (472)
T ss_dssp ---CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred hHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999988653
Q ss_pred -------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHH-HHcC
Q 003891 215 -------DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE---AYNNLGVLY-RDAG 283 (788)
Q Consensus 215 -------g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~---~~~~la~~~-~~~g 283 (788)
+.+++|+..++++++.+|.+..++..+|.++...|++++|+++|++++++.+++.. ++..+|.++ ...|
T Consensus 307 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (472)
T 4g1t_A 307 YGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMK 386 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCC
Confidence 34678999999999999999999999999999999999999999999999887643 466677654 5789
Q ss_pred CHHHHHHHHHHHHhhCCCChh
Q 003891 284 SISLAIDAYEQCLKIDPDSRN 304 (788)
Q Consensus 284 ~~~eA~~~~~~al~l~p~~~~ 304 (788)
++++|+.+|+++++++|++..
T Consensus 387 ~~~~Ai~~y~kal~i~~~~~~ 407 (472)
T 4g1t_A 387 CEDKAIHHFIEGVKINQKSRE 407 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCCHH
T ss_pred CHHHHHHHHHHHHhcCcccHH
Confidence 999999999999998887654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-25 Score=248.63 Aligned_cols=302 Identities=17% Similarity=0.126 Sum_probs=258.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKI---------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE------- 87 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~------- 87 (788)
+.++..+|.++..+|++++|+++|++++++ +|....+|.++|.+|..+|++++|+.++++++++
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 556888999999999999999999999986 6777889999999999999999999999999886
Q ss_pred -CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCC
Q 003891 88 -RPMYAEAYCNMGVIYKNR--GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW 164 (788)
Q Consensus 88 -~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p 164 (788)
.+..+.++..+|.++... +++++|+++|+++++++|+++..+..++.++..++ ..++.++|++.++++++++|
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~----~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLD----NWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH----HSCCCCCTHHHHHHHHHHCS
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc----CchHHHHHHHHHHHHhhcCC
Confidence 345688999998877664 57999999999999999999988888877766554 35788899999999999999
Q ss_pred CCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 003891 165 HYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN 240 (788)
Q Consensus 165 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 240 (788)
++..++..+|..+.. .+++++|++++++++..+|....++.++|.+|...|++++|+..|+++++.+|++..++..
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 999999988877655 4678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc-------------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 241 LGVVYTVQ-------------------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 241 la~~~~~~-------------------g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
+|.+|... +.+++|+..++++++.+|.+..++..+|.+|...|++++|+++|+++++++|+
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 99998653 34788999999999999999999999999999999999999999999999988
Q ss_pred ChhhHHh-HHHH-hhhccCCCchHHHHHHH
Q 003891 302 SRNAGQN-RLLA-MNYINEGHDDKLFEAHR 329 (788)
Q Consensus 302 ~~~a~~~-~lla-~~~l~~g~~~~~~~~~~ 329 (788)
+.....- ..++ ..+...++.+++.+.++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ 396 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFI 396 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6553211 1111 22335677777665544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-24 Score=222.79 Aligned_cols=238 Identities=17% Similarity=0.176 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHH
Q 003891 23 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-------AEAY 95 (788)
Q Consensus 23 la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~-------~~~~ 95 (788)
.+..+..+|..+...|++++|+.+|+++++.+ .+..++..+|.++...|++++|+..++++++..|.. ..++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 35567777777777788888888888887777 777777788888888888888888888777776655 5777
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003891 96 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGV 175 (788)
Q Consensus 96 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 175 (788)
..+|.++...|++++|+.+|++++++.|.. .++.. .|++++|+..+++++..+|.+..++..+|.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 147 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTA--------DILTK-------LRNAEKELKKAEAEAYVNPEKAEEARLEGK 147 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH--------HHHHH-------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCchh--------HHHHH-------HhHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 777777777777777777777777776651 12222 235566666666666655555555555555
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003891 176 AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 255 (788)
Q Consensus 176 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 255 (788)
++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+++++++.+|++..++..+|.++...|++++|+
T Consensus 148 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 148 EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHhC------CCCHHHHHHHH
Q 003891 256 EMIEKAIAAN------PTYAEAYNNLG 276 (788)
Q Consensus 256 ~~l~kal~~~------p~~~~~~~~la 276 (788)
.+++++++++ |++..++..++
T Consensus 228 ~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 228 ETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 5555555555 54444444443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=222.48 Aligned_cols=243 Identities=18% Similarity=0.206 Sum_probs=224.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 003891 57 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 136 (788)
Q Consensus 57 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l 136 (788)
.+..+..+|.++...|++++|+.+|+++++.+ .+..++..+|.++...|++++|+.++++++++.|+..........++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 46789999999999999999999999999999 88999999999999999999999999999999876532233345677
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 003891 137 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 216 (788)
Q Consensus 137 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 216 (788)
..+|.++...|++++|+.+++++++..|. +.++...|++++|+..+++++..+|.+..++..+|.++...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 78888888899999999999999999987 5677888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 217 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 296 (788)
Q Consensus 217 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 296 (788)
+++|+.+|+++++.+|.+..++..+|.++...|++++|+.+++++++.+|+++.++..+|.++..+|++++|+.+|++++
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhC------CCChhhHHh
Q 003891 297 KID------PDSRNAGQN 308 (788)
Q Consensus 297 ~l~------p~~~~a~~~ 308 (788)
+++ |++..+...
T Consensus 235 ~~~~~~~~~p~~~~~~~~ 252 (258)
T 3uq3_A 235 TKDAEVNNGSSAREIDQL 252 (258)
T ss_dssp HHHHHHHTTTTHHHHHHH
T ss_pred HhChhhcCCCchHHHHHH
Confidence 999 777665543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.2e-25 Score=227.90 Aligned_cols=248 Identities=17% Similarity=0.151 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 003891 58 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 137 (788)
Q Consensus 58 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 137 (788)
++.++.+|.+++..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++ .+.+... .+.++.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~---~~~~~~ 78 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKA---KSADFE 78 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTC---CHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhH---HHHHHH
Confidence 456777888888888888888888888888888888888888888888888888888888887 3332211 234556
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 003891 138 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 217 (788)
Q Consensus 138 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 217 (788)
.+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|.+..++..+|......+++
T Consensus 79 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 79 YYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHH
Confidence 66777777788888888888888888888899999999999999999999999999999999999999999445555699
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHHcCCHH
Q 003891 218 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAAN---PT-----YAEAYNNLGVLYRDAGSIS 286 (788)
Q Consensus 218 ~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~eA~~~l~kal~~~---p~-----~~~~~~~la~~~~~~g~~~ 286 (788)
++|+.+|+++++.+|++..++..+|.++...|+ +++|+..++++++.. |+ ...++..+|.+|...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999998 888999999999885 44 2368889999999999999
Q ss_pred HHHHHHHHHHhhCCCChhhHHhH
Q 003891 287 LAIDAYEQCLKIDPDSRNAGQNR 309 (788)
Q Consensus 287 eA~~~~~~al~l~p~~~~a~~~~ 309 (788)
+|+++|+++++++|++..++..+
T Consensus 239 ~A~~~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 239 KADAAWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCccHHHHHHHh
Confidence 99999999999999999887653
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-24 Score=228.70 Aligned_cols=263 Identities=18% Similarity=0.209 Sum_probs=235.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 003891 58 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 137 (788)
Q Consensus 58 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 137 (788)
...++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+++++++..|++...+..
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~------ 94 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA------ 94 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH------
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHH------
Confidence 45689999999999999999999999999999999999999999999999999999999999999998765554
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHHcCChHHHHHHHHHHHhcCCCCHH
Q 003891 138 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL--------------GV-AYGEMLKFDMAIVFYELAFHFNPHCAE 202 (788)
Q Consensus 138 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~al~~~p~~~~ 202 (788)
+|.++...|++++|+..++++++..|.+...+..+ +. ++...|++++|+..++++++..|.+..
T Consensus 95 -la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 173 (327)
T 3cv0_A 95 -LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQ 173 (327)
T ss_dssp -HHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred -HHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHH
Confidence 45555557799999999999999999988777766 66 688899999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003891 203 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 282 (788)
Q Consensus 203 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~ 282 (788)
++..+|.++...|++++|+.+++++++.+|++..++..+|.++...|++++|+..++++++..|++..++..+|.++..+
T Consensus 174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 174 LHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCC------------ChhhHHhHHHHhhhccCCCchHHHHHHH
Q 003891 283 GSISLAIDAYEQCLKIDPD------------SRNAGQNRLLAMNYINEGHDDKLFEAHR 329 (788)
Q Consensus 283 g~~~eA~~~~~~al~l~p~------------~~~a~~~~lla~~~l~~g~~~~~~~~~~ 329 (788)
|++++|+++|++++++.|+ +..++. .++..+...|+.+++.+..+
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWD--FFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHH--HHHHHHHHTTCHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHH--HHHHHHHhcCCHHHHHHHHH
Confidence 9999999999999999998 455544 46677777888877665543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-24 Score=223.01 Aligned_cols=250 Identities=16% Similarity=0.145 Sum_probs=221.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHH
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY----AEAYCNMGVI 101 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~----~~~~~~la~~ 101 (788)
.++.+|..++..|++++|+..|+++++.+|++..+++.+|.++...|++++|+..++++++ .|.+ ..++..+|.+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHH
Confidence 3778899999999999999999999999999999999999999999999999999999999 3333 5569999999
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003891 102 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 181 (788)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 181 (788)
+...|++++|+.+|+++++.+|++...+.. +|.++...|++++|+.+++++++.+|.+..++..+|...+..+
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-------l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQ-------IGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHH-------HHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHH-------HHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999998765554 4555555779999999999999999999999999995555567
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhC---CC-----CHHHHHHHHHHHHHcCC
Q 003891 182 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN---LDKAVECYQMALSIK---PN-----FSQSLNNLGVVYTVQGK 250 (788)
Q Consensus 182 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~eA~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~ 250 (788)
++++|+..|+++++.+|++..++..+|.++...|+ +++|+..|+++++.. |+ ...++..+|.+|...|+
T Consensus 157 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 157 EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999 999999999999885 44 23688999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003891 251 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 283 (788)
Q Consensus 251 ~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g 283 (788)
+++|+++++++++++|+++.++..++.+....+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 237 KVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 999999999999999999999988887765443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.7e-24 Score=212.85 Aligned_cols=210 Identities=21% Similarity=0.178 Sum_probs=134.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 003891 55 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 134 (788)
Q Consensus 55 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 134 (788)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++...+..++.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 56777888888888888888888888888888888888888888888888888888888888888888888877777766
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 003891 135 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 214 (788)
Q Consensus 135 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 214 (788)
++..++.. .+. .....|++++|+..|+++++.+|++..++.++|.++...
T Consensus 82 ~~~~~~~~---~~~---------------------------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~ 131 (217)
T 2pl2_A 82 AYVALYRQ---AED---------------------------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL 131 (217)
T ss_dssp HHHHHHHT---CSS---------------------------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHhhhh---hhh---------------------------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 66554200 000 112335556666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 215 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 294 (788)
Q Consensus 215 g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 294 (788)
|++++|+..|+++++++ +++.++.++|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|++.|++
T Consensus 132 g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 132 GERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp TCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred CChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 66666666666666666 56666666666666666666666666666666666666666666666666666666666655
Q ss_pred H
Q 003891 295 C 295 (788)
Q Consensus 295 a 295 (788)
+
T Consensus 211 ~ 211 (217)
T 2pl2_A 211 E 211 (217)
T ss_dssp -
T ss_pred H
Confidence 4
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.2e-24 Score=213.07 Aligned_cols=180 Identities=19% Similarity=0.238 Sum_probs=131.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----------CC
Q 003891 148 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-----------DN 216 (788)
Q Consensus 148 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~ 216 (788)
++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++.++|.++... |+
T Consensus 20 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~ 99 (217)
T 2pl2_A 20 RYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGY 99 (217)
T ss_dssp CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccC
Confidence 4444444444444444444445555555555555555555555555555555555555555555555 99
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 217 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 296 (788)
Q Consensus 217 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 296 (788)
+++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++++ +++.++.++|.+|..+|++++|+..|++++
T Consensus 100 ~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 178 (217)
T 2pl2_A 100 LEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKAL 178 (217)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred hhCCCChhhHHhHHHHhhhccCCCchHHHHHHHH
Q 003891 297 KIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 330 (788)
Q Consensus 297 ~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~ 330 (788)
+++|++..++.+ ++..+...|+.+++.+..++
T Consensus 179 ~~~P~~~~~~~~--la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 179 EQAPKDLDLRVR--YASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHSTTCHHHHHH--HHHHHTC-------------
T ss_pred HhCCCChHHHHH--HHHHHHHccCHHHHHHHHHH
Confidence 999999988776 56677888888887765543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-24 Score=237.28 Aligned_cols=278 Identities=25% Similarity=0.310 Sum_probs=242.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHH
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY----APAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAE 93 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~kal~~------~p~~~~ 93 (788)
+..+..+|..+...|++++|+.+|+++++..|++ ..++..+|.++...|++++|+.+++++++. .|....
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 3457889999999999999999999999999998 468999999999999999999999999876 344577
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCC--------------------HHHHH
Q 003891 94 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD--------------------INQGV 153 (788)
Q Consensus 94 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~--------------------~~~A~ 153 (788)
++..+|.++...|++++|+.++++++++.+.... ....+.++..+|.++...|+ +++|+
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 8999999999999999999999999998765322 12346677788888888889 99999
Q ss_pred HHHHHHHHhC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHH
Q 003891 154 AYYKKALYYN------WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAV 221 (788)
Q Consensus 154 ~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~ 221 (788)
.++++++++. +....++..+|.++...|++++|+..++++++..+.. ..++.++|.++...|++++|+
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 9999998762 3335678999999999999999999999999875543 348999999999999999999
Q ss_pred HHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHH
Q 003891 222 ECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNNLGVLYRDAGSISLAI 289 (788)
Q Consensus 222 ~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~------~~~~~~la~~~~~~g~~~eA~ 289 (788)
.+++++++..+.. ..++..+|.++...|++++|+.++++++++.+.. ..++..+|.+|..+|++++|+
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999886655 6689999999999999999999999999885443 678999999999999999999
Q ss_pred HHHHHHHhhCCCC
Q 003891 290 DAYEQCLKIDPDS 302 (788)
Q Consensus 290 ~~~~~al~l~p~~ 302 (788)
.+|++++++.+..
T Consensus 328 ~~~~~al~~~~~~ 340 (406)
T 3sf4_A 328 HFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999885543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.7e-23 Score=216.89 Aligned_cols=260 Identities=12% Similarity=0.017 Sum_probs=228.7
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Q 003891 33 SLKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 111 (788)
Q Consensus 33 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A 111 (788)
..+..|+|.+|+..+++....+|++ .+....++.+|..+|++++|+..++. .+|....++..++..+...++.++|
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 4567899999999999887777776 46788899999999999999998866 2565678899999999999999999
Q ss_pred HHHHHHHHhh--CCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003891 112 IACYERCLAV--SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 189 (788)
Q Consensus 112 ~~~~~~al~~--~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 189 (788)
++.+++++.. +|++...+.. +|.++...|++++|++.+++ |.+.+++..+|.++..+|++++|++.
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~-------la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLM-------AASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHH-------HHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHH-------HHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999876 5888765544 45555557799999999998 89999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003891 190 YELAFHFNPHCAEACNNLG--VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 267 (788)
Q Consensus 190 ~~~al~~~p~~~~~~~~la--~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 267 (788)
++++++.+|++.......+ .++...|++++|+.+|+++++..|+++.+++++|.++..+|++++|+..|+++++.+|+
T Consensus 153 l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 153 LKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999865444433 44445689999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhhCCCChhhHH
Q 003891 268 YAEAYNNLGVLYRDAGSISL-AIDAYEQCLKIDPDSRNAGQ 307 (788)
Q Consensus 268 ~~~~~~~la~~~~~~g~~~e-A~~~~~~al~l~p~~~~a~~ 307 (788)
+++++.++|.++...|+..+ +.++++++++++|+++.+..
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 99999999999999999976 57899999999999987643
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.4e-24 Score=225.46 Aligned_cols=277 Identities=25% Similarity=0.304 Sum_probs=237.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHH
Q 003891 25 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY----APAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAEA 94 (788)
Q Consensus 25 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~kal~~------~p~~~~~ 94 (788)
..++..|..+...|++++|+..|+++++..|++ ..++..+|.++...|++++|+.+++++++. .+....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 347788999999999999999999999999998 478899999999999999999999999876 3445778
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCC--------------------HHHHHH
Q 003891 95 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD--------------------INQGVA 154 (788)
Q Consensus 95 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~--------------------~~~A~~ 154 (788)
+..+|.++...|++++|+.++++++++.+.... ....+.++..+|.++...|+ +++|+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 999999999999999999999999988654322 12345677778888888888 999999
Q ss_pred HHHHHHHhC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHH
Q 003891 155 YYKKALYYN------WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVE 222 (788)
Q Consensus 155 ~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~ 222 (788)
++++++... +....++..+|.++...|++++|+..++++++..+.. ..++..+|.++...|++++|+.
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999998762 2334578999999999999999999999999875432 3489999999999999999999
Q ss_pred HHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHH
Q 003891 223 CYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNNLGVLYRDAGSISLAID 290 (788)
Q Consensus 223 ~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~------~~~~~~la~~~~~~g~~~eA~~ 290 (788)
+++++++..+.. ..++..+|.++...|++++|+.+++++++..+.. ..++..+|.+|..+|++++|..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 999999886554 6688999999999999999999999999885432 5588899999999999999999
Q ss_pred HHHHHHhhCCCC
Q 003891 291 AYEQCLKIDPDS 302 (788)
Q Consensus 291 ~~~~al~l~p~~ 302 (788)
++++++++.++.
T Consensus 325 ~~~~a~~~~~~~ 336 (338)
T 3ro2_A 325 FAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHHHHHHhh
Confidence 999999987753
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=231.94 Aligned_cols=279 Identities=24% Similarity=0.297 Sum_probs=242.4
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC
Q 003891 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA----PAYYNLGVVYSELMQYDTALGCYEKAALE------RPMY 91 (788)
Q Consensus 22 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~kal~~------~p~~ 91 (788)
..+..+..+|..+...|++++|+..|+++++..|++. .++..+|.++...|++++|+.+++++++. .+..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 4566688999999999999999999999999999986 58999999999999999999999999987 4667
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCC-----------------HHHHHH
Q 003891 92 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD-----------------INQGVA 154 (788)
Q Consensus 92 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~-----------------~~~A~~ 154 (788)
..++..+|.+|...|++++|+.++++++++.+... .....+.++..+|.++...|+ +++|+.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG-DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 78999999999999999999999999998843321 112345667777777777888 999999
Q ss_pred HHHHHHHhC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHH
Q 003891 155 YYKKALYYN------WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVE 222 (788)
Q Consensus 155 ~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~ 222 (788)
++++++++. +....++..+|.++...|++++|+.+++++++..+.. ..++.++|.++...|++++|+.
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 999998764 2234588999999999999999999999999886543 3488999999999999999999
Q ss_pred HHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHH
Q 003891 223 CYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNNLGVLYRDAGSISLAID 290 (788)
Q Consensus 223 ~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~------~~~~~~la~~~~~~g~~~eA~~ 290 (788)
+|+++++..+.. ..++..+|.++...|++++|+.++++++.+.+.. ..++..+|.+|..+|++++|.+
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 999999987644 6689999999999999999999999999885432 5689999999999999999999
Q ss_pred HHHHHHhhCCC
Q 003891 291 AYEQCLKIDPD 301 (788)
Q Consensus 291 ~~~~al~l~p~ 301 (788)
+|++++++.+.
T Consensus 365 ~~~~al~~~~~ 375 (411)
T 4a1s_A 365 YAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHCCH
T ss_pred HHHHHHHHHhh
Confidence 99999998775
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-23 Score=229.34 Aligned_cols=282 Identities=23% Similarity=0.299 Sum_probs=242.9
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYD 75 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~ 75 (788)
|+..|+++++..|++... .+.++..+|.++...|++++|+.+|+++++. .|....++..+|.++...|+++
T Consensus 28 A~~~~~~al~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 104 (406)
T 3sf4_A 28 GVSFFEAAVQVGTEDLKT---LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFD 104 (406)
T ss_dssp HHHHHHHHHHHCCSCHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhcCcccHHH---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHH
Confidence 789999999999987653 5677999999999999999999999999887 3445778999999999999999
Q ss_pred HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHhhCCCcHHHH
Q 003891 76 TALGCYEKAALERPMY------AEAYCNMGVIYKNRGD--------------------LESAIACYERCLAVSPNFEIAK 129 (788)
Q Consensus 76 ~A~~~~~kal~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~p~~~~~~ 129 (788)
+|+.+++++++..+.. ..++..+|.+|...|+ +++|+.++++++++.+... ..
T Consensus 105 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~-~~ 183 (406)
T 3sf4_A 105 EAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG-DR 183 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTT-CH
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc-Cc
Confidence 9999999999876542 5689999999999999 9999999999988743321 12
Q ss_pred HHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---
Q 003891 130 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA------DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC--- 200 (788)
Q Consensus 130 ~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 200 (788)
...+.++..+|.++...|++++|+.+++++++..+... .++..+|.++...|++++|+.++++++...+..
T Consensus 184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 263 (406)
T 3sf4_A 184 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 263 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc
Confidence 33467788889999999999999999999998865543 389999999999999999999999999886654
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----
Q 003891 201 ---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP----- 266 (788)
Q Consensus 201 ---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p----- 266 (788)
..++..+|.++...|++++|+.+|+++++..+.. ..++..+|.+|...|++++|+.++++++++.+
T Consensus 264 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 343 (406)
T 3sf4_A 264 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDK 343 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 7789999999999999999999999999885443 56889999999999999999999999998843
Q ss_pred -CCHHHHHHHHHHHHHcCCHHH
Q 003891 267 -TYAEAYNNLGVLYRDAGSISL 287 (788)
Q Consensus 267 -~~~~~~~~la~~~~~~g~~~e 287 (788)
....++..++.++...|+...
T Consensus 344 ~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 344 SGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSC
T ss_pred cchhHHHHHHHHHHHHhhHhHH
Confidence 336788999999999987744
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.9e-22 Score=207.15 Aligned_cols=247 Identities=9% Similarity=-0.062 Sum_probs=212.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--RPMYAEAYCNMGVIYKN 104 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~--~p~~~~~~~~la~~~~~ 104 (788)
...++.++...|++++|+..++. .+|....++..++..+...+++++|++.+++++.. +|+++.+++.+|.++..
T Consensus 37 ~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~ 113 (291)
T 3mkr_A 37 DVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY 113 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH
Confidence 45567889999999999998866 25667788899999999999999999999999876 69999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHcCC
Q 003891 105 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG--VAYGEMLK 182 (788)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~~~g~ 182 (788)
.|++++|++.+++ |.+...+.. ++.++...|++++|++.++++++.+|++.......+ .++...|+
T Consensus 114 ~g~~~~Al~~l~~-----~~~~~~~~~-------l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~ 181 (291)
T 3mkr_A 114 DQNPDAALRTLHQ-----GDSLECMAM-------TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK 181 (291)
T ss_dssp TTCHHHHHHHHTT-----CCSHHHHHH-------HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTH
T ss_pred CCCHHHHHHHHhC-----CCCHHHHHH-------HHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchH
Confidence 9999999999998 777655544 455555577999999999999999999865544333 34445689
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHH
Q 003891 183 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA-AAEMIEKA 261 (788)
Q Consensus 183 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e-A~~~l~ka 261 (788)
+++|+..|+++++..|+++.+++++|.++..+|++++|+..|+++++.+|+++.++.++|.++...|+.++ +.++++++
T Consensus 182 ~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 182 LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999976 57899999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 262 IAANPTYAEAYNNLGVLYRDAGSISLAIDAY 292 (788)
Q Consensus 262 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 292 (788)
++++|+++.+. .+..+.+.++++..-|
T Consensus 262 ~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 262 KDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 99999998765 3455666666666554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=6.3e-22 Score=201.12 Aligned_cols=217 Identities=20% Similarity=0.242 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003891 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 101 (788)
Q Consensus 22 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~ 101 (788)
..+..++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|.+..++..+|.+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34556777777778888888888888888888888888888888888888888888888888888888777888888888
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003891 102 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 181 (788)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 181 (788)
+...|++++|+++++++++..|++...+.. +|.++...|++++|+.+++++++..|++..++..+|.++...|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYM-------LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEG 173 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHH-------HHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHH-------HHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcC
Confidence 888888887777777777777766543333 3333334456666666666666666666666666666666666
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003891 182 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 245 (788)
Q Consensus 182 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 245 (788)
++++|+..++++++..|++..++..+|.++...|++++|+.+|+++++.+|++..++..++.+.
T Consensus 174 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 6666666666666665555555555666655556666666666555555555555555554443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=7.4e-21 Score=197.80 Aligned_cols=232 Identities=22% Similarity=0.324 Sum_probs=198.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCcHHHH
Q 003891 54 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEIAK 129 (788)
Q Consensus 54 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 129 (788)
+|+++.+++.+|.++...|++++|+.+|+++++ +.+..+++.+|.+|.. .+++++|+.+|+++++.. +..
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~-- 75 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSN-- 75 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH--
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHH--
Confidence 467788888999999999999999999998888 6778888899999998 899999999999988874 333
Q ss_pred HHHHHHHHHhhhhhhh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCH
Q 003891 130 NNMAIALTDLGTKVKL----EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHCA 201 (788)
Q Consensus 130 ~~la~~l~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~ 201 (788)
++..+|.++.. .+++++|+.+|+++++. +++.++..+|.+|.. .+++++|+.+|+++++.. +.
T Consensus 76 -----a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~ 146 (273)
T 1ouv_A 76 -----GCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DG 146 (273)
T ss_dssp -----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred -----HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cH
Confidence 34445555555 77999999999999887 478899999999999 999999999999999875 67
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 003891 202 EACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYN 273 (788)
Q Consensus 202 ~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~kal~~~p~~~~~~~ 273 (788)
.++.++|.++.. .+++++|+.+|+++++. .++.++..+|.+|.. .+++++|+++|+++++..+ +.+++
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~ 222 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCF 222 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHH
Confidence 889999999998 99999999999999987 467899999999999 9999999999999999866 78899
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhhCCCChh
Q 003891 274 NLGVLYRD----AGSISLAIDAYEQCLKIDPDSRN 304 (788)
Q Consensus 274 ~la~~~~~----~g~~~eA~~~~~~al~l~p~~~~ 304 (788)
.+|.+|.. .+++++|+++|++++++.|++..
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 99999999 99999999999999999886443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=6.3e-22 Score=201.09 Aligned_cols=218 Identities=22% Similarity=0.274 Sum_probs=136.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 003891 57 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 136 (788)
Q Consensus 57 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l 136 (788)
.+..++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++..|++...+..+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l---- 97 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGA---- 97 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH----
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHH----
Confidence 3566777888888888888888888888888888888888888888888888888888888888777765444333
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 003891 137 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 216 (788)
Q Consensus 137 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 216 (788)
|.++...|++++|+.+++++++..|.+..++..+|.++...|++++|+..++++++..|++..++..+|.++...|+
T Consensus 98 ---a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 98 ---GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM 174 (243)
T ss_dssp ---HHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred ---HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCC
Confidence 33334455777777777777777777766666777777777777777777777666666666666666666666666
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 217 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 281 (788)
Q Consensus 217 ~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~ 281 (788)
+++|+.+++++++..|++..++..+|.++...|++++|+.+++++++.+|++..++..++.+...
T Consensus 175 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 175 LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence 66666666666666666666666666666666666666666666666666666666665555443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-19 Score=205.44 Aligned_cols=274 Identities=19% Similarity=0.174 Sum_probs=158.8
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCC
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE----LMQ 73 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~ 73 (788)
|++.|+++++. +++.+ ++.+|..+.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .++
T Consensus 62 A~~~~~~a~~~--~~~~a-------~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~ 130 (490)
T 2xm6_A 62 AMDWFRRAAEQ--GYTPA-------EYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVD 130 (490)
T ss_dssp HHHHHHHHHHT--TCHHH-------HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHHHHHC--CCHHH-------HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC
Confidence 56777777765 44444 5566666666 77778888888877664 467777777777777 677
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-----------
Q 003891 74 YDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEIAKNNMAIALTD----------- 138 (788)
Q Consensus 74 ~~~A~~~~~kal~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~----------- 138 (788)
+++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+++|+++++. .+..++..++.++..
T Consensus 131 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A 206 (490)
T 2xm6_A 131 KAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAIS 206 (490)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHH
Confidence 77777777777664 457777777777776 67777777777777765 234444444333322
Q ss_pred ------------------hhhhhhh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHH
Q 003891 139 ------------------LGTKVKL----EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYEL 192 (788)
Q Consensus 139 ------------------lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~ 192 (788)
+|.++.. .+++++|+.+|+++++. .+..+++.+|.+|.. .+++++|+.+|++
T Consensus 207 ~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~ 284 (490)
T 2xm6_A 207 AQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRK 284 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Confidence 2222222 34444444444444432 234444555555544 4555555555555
Q ss_pred HHhcCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHh
Q 003891 193 AFHFNPHCAEACNNLGVIYKDR-----DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG---KMDAAAEMIEKAIAA 264 (788)
Q Consensus 193 al~~~p~~~~~~~~la~~~~~~-----g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~l~kal~~ 264 (788)
+.+. .+..+++.+|.+|... +++++|+.+|+++++. .++.+++++|.+|...| ++++|+++|+++++.
T Consensus 285 a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 285 SAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 5433 3344555555555554 5555555555555543 33455555555555544 555555555555554
Q ss_pred CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Q 003891 265 NPTYAEAYNNLGVLYRD----AGSISLAIDAYEQCLKI 298 (788)
Q Consensus 265 ~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~l 298 (788)
.++.+++++|.+|.. .+++++|+.+|+++.+.
T Consensus 361 --~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 361 --GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp --TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred --CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 345555556666555 55566666666665554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=6.3e-22 Score=205.14 Aligned_cols=247 Identities=17% Similarity=0.149 Sum_probs=208.7
Q ss_pred HHHcCChHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Q 003891 34 LKLAGNTQDGIQKYYEALKID----PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 109 (788)
Q Consensus 34 ~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~ 109 (788)
+...|++++|+..|+++++.. |.++.+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 345688999999999999873 4568899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003891 110 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVF 189 (788)
Q Consensus 110 ~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 189 (788)
+|+.+|+++++++|++...+..+ |.++...|++++|+.+++++++.+|++......++.. ...|++++|+..
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~ 166 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNR-------GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEV 166 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHH-------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHH-------HHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHH
Confidence 99999999999999987655554 4455556799999999999999999998766666544 666999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003891 190 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 265 (788)
Q Consensus 190 ~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~~~l~kal~~~ 265 (788)
+++++...|.+...+. ++.++...++.++|+..++++++..|.. ..++..+|.++...|++++|+.+|+++++.+
T Consensus 167 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 167 LKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 9999999888765544 7777888889999999999998876643 6788999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 266 PTYAEAYNNLGVLYRDAGSISLAIDAY 292 (788)
Q Consensus 266 p~~~~~~~~la~~~~~~g~~~eA~~~~ 292 (788)
|++... .+.++..+|++++|++.|
T Consensus 246 p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 VHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CTTCHH---HHHHHHHHHHHHHC----
T ss_pred chhHHH---HHHHHHHHHHHHhhHHHH
Confidence 876443 377888889999998877
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-19 Score=205.36 Aligned_cols=284 Identities=21% Similarity=0.206 Sum_probs=216.6
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCC
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE----LMQ 73 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~ 73 (788)
|+++|+++.+. +++.+ ++.+|.++.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .++
T Consensus 98 A~~~~~~a~~~--~~~~a-------~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d 166 (490)
T 2xm6_A 98 AVIWYKKAALK--GLPQA-------QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRD 166 (490)
T ss_dssp HHHHHHHHHHT--TCHHH-------HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHHHHHC--CCHHH-------HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC
Confidence 56777777664 34444 4455555555 56677777777766554 456666666666666 566
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCcHHHHHHHHH---------------
Q 003891 74 YDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEIAKNNMAI--------------- 134 (788)
Q Consensus 74 ~~~A~~~~~kal~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~--------------- 134 (788)
+++|+.+|+++++. .++.+++.+|.+|.. .+++++|+++|+++.+.. +..+...++.
T Consensus 167 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A 242 (490)
T 2xm6_A 167 YVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG--DELGQLHLADMYYFGIGVTQDYTQS 242 (490)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 66666666666654 356666666666666 566666666666665542 2223333332
Q ss_pred --------------HHHHhhhhhhh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CChHHHHHHHH
Q 003891 135 --------------ALTDLGTKVKL----EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM-----LKFDMAIVFYE 191 (788)
Q Consensus 135 --------------~l~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~ 191 (788)
++..+|.++.. .+++++|+.+|+++.+. .++.+++.+|.+|... +++++|+.+|+
T Consensus 243 ~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 243 RVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 23345666666 78999999999999865 6789999999999998 99999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 003891 192 LAFHFNPHCAEACNNLGVIYKDRD---NLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAA 264 (788)
Q Consensus 192 ~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~kal~~ 264 (788)
++.+. .+..+++++|.+|...| ++++|+.+|+++++. .++.+++++|.+|.. .+++++|+++|+++.+.
T Consensus 321 ~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 321 KSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 99986 46789999999999877 899999999999987 679999999999999 89999999999999986
Q ss_pred CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC---ChhhHHh
Q 003891 265 NPTYAEAYNNLGVLYRD----AGSISLAIDAYEQCLKIDPD---SRNAGQN 308 (788)
Q Consensus 265 ~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~l~p~---~~~a~~~ 308 (788)
. ++.+++++|.+|.. .+++++|..+|+++++.+|+ +..+..+
T Consensus 397 ~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~ 445 (490)
T 2xm6_A 397 G--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNIT 445 (490)
T ss_dssp T--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred C--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHH
Confidence 4 68999999999999 89999999999999999955 5555443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-20 Score=193.97 Aligned_cols=227 Identities=21% Similarity=0.287 Sum_probs=206.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIY 102 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~ 102 (788)
++.+|..+...|++++|+.+|+++++ |++..+++.+|.++.. .+++++|+.+|+++++.+ ++.+++.+|.+|
T Consensus 9 ~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~ 84 (273)
T 1ouv_A 9 LVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLY 84 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHH
Confidence 78888889999999999999999998 7889999999999999 999999999999999985 799999999999
Q ss_pred HH----CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003891 103 KN----RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL----EGDINQGVAYYKKALYYNWHYADAMYNLG 174 (788)
Q Consensus 103 ~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la 174 (788)
.. .+++++|+.+|+++++.. +.. ++..+|.++.. .+++++|+.+|+++++.. +..++..+|
T Consensus 85 ~~g~~~~~~~~~A~~~~~~a~~~~--~~~-------a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 153 (273)
T 1ouv_A 85 YSGQGVSQNTNKALQYYSKACDLK--YAE-------GCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG 153 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT--CHH-------HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred hCCCCcccCHHHHHHHHHHHHHcC--Ccc-------HHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence 99 999999999999999874 444 44555666666 789999999999999976 688999999
Q ss_pred HHHHH----cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 003891 175 VAYGE----MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 246 (788)
Q Consensus 175 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 246 (788)
.+|.. .+++++|+.+|+++++. .+..++..+|.+|.. .+++++|+.+|+++++..+ +.++..+|.+|.
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~ 229 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQY 229 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence 99999 99999999999999987 468999999999999 9999999999999999865 889999999999
Q ss_pred H----cCCHHHHHHHHHHHHHhCCCCHHHH
Q 003891 247 V----QGKMDAAAEMIEKAIAANPTYAEAY 272 (788)
Q Consensus 247 ~----~g~~~eA~~~l~kal~~~p~~~~~~ 272 (788)
. .+++++|+++|+++++..|+++..+
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9 9999999999999999988754433
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-21 Score=187.60 Aligned_cols=171 Identities=25% Similarity=0.383 Sum_probs=165.6
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003891 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 212 (788)
Q Consensus 133 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 212 (788)
+.+|..+|.++..+|++++|++.|+++++.+|++..++..+|.++...|++++|+..+++++...|++..++..+|.++.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 35677788888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 213 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 292 (788)
Q Consensus 213 ~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 292 (788)
..+++++|...++++++..|.+..++..+|.++..+|++++|++.|+++++++|+++.+++++|.+|..+|++++|+++|
T Consensus 85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 164 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCh
Q 003891 293 EQCLKIDPDSR 303 (788)
Q Consensus 293 ~~al~l~p~~~ 303 (788)
+++++++|++.
T Consensus 165 ~~al~~~p~~a 175 (184)
T 3vtx_A 165 KKALEKEEKKA 175 (184)
T ss_dssp HHHHHTTHHHH
T ss_pred HHHHhCCccCH
Confidence 99999999764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-20 Score=193.67 Aligned_cols=208 Identities=18% Similarity=0.141 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 003891 92 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 171 (788)
Q Consensus 92 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 171 (788)
+.++..+|.++...|++++|+.+|+++++..|++...+.. +|.++...|++++|+++++++++.+|.+..++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-------la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 109 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAA-------LAVVFQTEMEPKLADEEYRKALASDSRNARVLN 109 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHH-------HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence 3444445555555555555555555555554444332222 222223334555555555555555555556666
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 003891 172 NLGVAYGEMLKFDMAIVFYELAFH--FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 249 (788)
Q Consensus 172 ~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 249 (788)
.+|.++...|++++|+++++++++ ..|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++...|
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER 189 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence 666666677777777777777766 566667777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhH
Q 003891 250 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 250 ~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
++++|+.+++++++..|++...+..++.++...|++++|.+++++++++.|++..+.
T Consensus 190 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 777777777777777777777777777777777777777777777777777766553
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-22 Score=221.17 Aligned_cols=262 Identities=21% Similarity=0.285 Sum_probs=229.4
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYD 75 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~ 75 (788)
|+..|+++++..|++... .+.++..+|.++...|++++|+.+|+++++. .+....++..+|.+|...|+++
T Consensus 67 A~~~~~~al~~~~~~~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 143 (411)
T 4a1s_A 67 GVAFFQAAIQAGTEDLRT---LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFD 143 (411)
T ss_dssp HHHHHHHHHHHCCSCHHH---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhcccChhH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHH
Confidence 789999999999997653 5667899999999999999999999999988 5667889999999999999999
Q ss_pred HHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCC-----------------HHHHHHHHHHHHhhCCCcHHHHHHH
Q 003891 76 TALGCYEKAALE------RPMYAEAYCNMGVIYKNRGD-----------------LESAIACYERCLAVSPNFEIAKNNM 132 (788)
Q Consensus 76 ~A~~~~~kal~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~~al~~~p~~~~~~~~l 132 (788)
+|+.+++++++. .+....++..+|.+|...|+ +++|+.++++++++.+... .....
T Consensus 144 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~-~~~~~ 222 (411)
T 4a1s_A 144 EAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG-DRGAQ 222 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT-CHHHH
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC-CHHHH
Confidence 999999999987 45567899999999999999 9999999999988754321 11334
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------
Q 003891 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA------DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------ 200 (788)
Q Consensus 133 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 200 (788)
+.++..+|.++...|++++|+.+++++++..+... .++..+|.++...|++++|+..+++++...+..
T Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 302 (411)
T 4a1s_A 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVE 302 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 66788889999999999999999999998876433 388999999999999999999999999886643
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003891 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 267 (788)
Q Consensus 201 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 267 (788)
..++..+|.++...|++++|+.+++++++..+.. ..++..+|.+|...|++++|+.++++++++.+.
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 303 AQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 6789999999999999999999999999875432 458899999999999999999999999998765
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-20 Score=193.23 Aligned_cols=209 Identities=18% Similarity=0.096 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 003891 58 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 137 (788)
Q Consensus 58 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 137 (788)
+.+++.+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|++.++++++..|.+...+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l----- 111 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY----- 111 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-----
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHH-----
Confidence 455666666666666666666666666666666666666666666666666666666666666666554333333
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 003891 138 DLGTKVKLEGDINQGVAYYKKALY--YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 215 (788)
Q Consensus 138 ~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 215 (788)
+.++...|++++|+++++++++ ..|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|
T Consensus 112 --a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 112 --GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER 189 (252)
T ss_dssp --HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence 3333334566666666666666 556666667777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 003891 216 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 273 (788)
Q Consensus 216 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~ 273 (788)
++++|+.+++++++..|.+...+..++.++...|++++|..+++++++..|+++....
T Consensus 190 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 7777777777777777777777777777777777777777777777777777766544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-20 Score=186.05 Aligned_cols=211 Identities=16% Similarity=0.105 Sum_probs=134.7
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHH
Q 003891 89 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 168 (788)
Q Consensus 89 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 168 (788)
|.++.++..+|.++...|++++|++.++++++..|++...+.. +|.++...|++++|+.+++++++.+|.+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 77 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLV-------RAEIYQYLKVNDKAQESFRQALSIKPDSAE 77 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-------HHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHH-------HHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence 3334444444444555555555555555554444444332222 222223334555555555555555555555
Q ss_pred HHHHHHHHHHHc-CChHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003891 169 AMYNLGVAYGEM-LKFDMAIVFYELAFH--FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 245 (788)
Q Consensus 169 ~~~~la~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 245 (788)
++..+|.++... |++++|+..++++++ ..|....++..+|.++...|++++|+.+++++++..|.+..++..+|.++
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 157 (225)
T 2vq2_A 78 INNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTK 157 (225)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 566666666666 666666666666666 44555677777777777777777777777777777777777777777777
Q ss_pred HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhH
Q 003891 246 TVQGKMDAAAEMIEKAIAANP-TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 246 ~~~g~~~eA~~~l~kal~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
...|++++|+..++++++..| .+...+..++.++...|+.++|..+++.+.+.+|++..+.
T Consensus 158 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 158 MLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence 777777777777777777777 7777777777777777777777777777777777776654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-20 Score=185.68 Aligned_cols=214 Identities=18% Similarity=0.114 Sum_probs=145.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 003891 54 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 133 (788)
Q Consensus 54 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 133 (788)
.|+++.+++.+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+++++++++..|++...+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--- 80 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINN--- 80 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH---
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHH---
Confidence 44555666666666666666666666666666666666666666666666666666666666666666666544333
Q ss_pred HHHHHhhhhhhhc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 003891 134 IALTDLGTKVKLE-GDINQGVAYYKKALY--YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 210 (788)
Q Consensus 134 ~~l~~lg~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 210 (788)
.+|.++... |++++|+.+++++++ ..|....++..+|.++...|++++|+..++++++..|.+..++..+|.+
T Consensus 81 ----~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 156 (225)
T 2vq2_A 81 ----NYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELART 156 (225)
T ss_dssp ----HHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred ----HHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 333334445 566666666666666 4455566777777777777777777777777777777777777777777
Q ss_pred HHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003891 211 YKDRDNLDKAVECYQMALSIKP-NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 274 (788)
Q Consensus 211 ~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~ 274 (788)
+...|++++|+.+++++++..| .+...+..++.++...|++++|..+++.+.+.+|+++.+...
T Consensus 157 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 157 KMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 7777777777777777777777 777777777777777777777777777777777777665543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-20 Score=194.46 Aligned_cols=242 Identities=15% Similarity=0.095 Sum_probs=209.9
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|++.|+++++..+.+.. ..+.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|
T Consensus 24 A~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 100 (275)
T 1xnf_A 24 ILARMEQILASRALTDD---ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF 100 (275)
T ss_dssp HHHHHHHHHTSSCCCHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcccccCc---hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 78899999998664432 346678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH
Q 003891 82 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 161 (788)
Q Consensus 82 ~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~ 161 (788)
+++++.+|.+..++..+|.++...|++++|+.+|++++++.|++......... ....|++++|+..+++++.
T Consensus 101 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 101 DSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYL--------AEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH--------HHHHHCHHHHHHHHHHHHH
T ss_pred HHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHH--------HHHhcCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998754433221 1335799999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 003891 162 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH----CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 237 (788)
Q Consensus 162 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 237 (788)
..|.+...+. ++.++...++.++|+..+++++...|. +..++..+|.++...|++++|+.+|+++++.+|++...
T Consensus 173 ~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 173 KSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp HSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred cCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 9988766554 777888899999999999999987764 37899999999999999999999999999999977443
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 003891 238 LNNLGVVYTVQGKMDAAAEMI 258 (788)
Q Consensus 238 ~~~la~~~~~~g~~~eA~~~l 258 (788)
.+.++...|++++|++.+
T Consensus 252 ---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 ---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHhhHHHH
Confidence 477888999999999887
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-19 Score=207.61 Aligned_cols=312 Identities=13% Similarity=0.039 Sum_probs=244.2
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 6 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 85 (788)
Q Consensus 6 ~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal 85 (788)
++++|+.+|.+..+|..++ . +...|++++|...|+++++..|.+...|..++..+...|++++|...|++++
T Consensus 2 le~al~~~P~~~~~w~~l~-------~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral 73 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILI-------R-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCL 73 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHH-------H-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhHhhhCCCCHHHHHHHH-------H-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 7899999999998855444 3 2457999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHH------------------------------------------HHH---------CCCHHHHHHH
Q 003891 86 LERPMYAEAYCNMGVI------------------------------------------YKN---------RGDLESAIAC 114 (788)
Q Consensus 86 ~~~p~~~~~~~~la~~------------------------------------------~~~---------~g~~~~A~~~ 114 (788)
...| +...|..++.. ... .|++++|...
T Consensus 74 ~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 152 (530)
T 2ooe_A 74 MKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRV 152 (530)
T ss_dssp TTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHH
T ss_pred hcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHH
Confidence 9988 45555544421 111 4567777788
Q ss_pred HHHHHhhCCCcH--HHHHHHHHHHH---------------------------------Hhh------------------h
Q 003891 115 YERCLAVSPNFE--IAKNNMAIALT---------------------------------DLG------------------T 141 (788)
Q Consensus 115 ~~~al~~~p~~~--~~~~~la~~l~---------------------------------~lg------------------~ 141 (788)
|+++++ .|... ..+........ .+. .
T Consensus 153 y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 153 YQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 888877 45432 11111111000 000 0
Q ss_pred hh-----hh------cCC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCChH-------HHHHHHHH
Q 003891 142 KV-----KL------EGD----INQGVAYYKKALYYNWHYADAMYNLGVAYGE-------MLKFD-------MAIVFYEL 192 (788)
Q Consensus 142 ~~-----~~------~g~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~ 192 (788)
.+ .. .++ .++++..|++++..+|.++.+|+.+|..+.. .|+++ +|+..|++
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~ 311 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYER 311 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHH
Confidence 00 00 011 1367789999999999999999999999886 79987 89999999
Q ss_pred HHh-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 003891 193 AFH-FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS-QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 270 (788)
Q Consensus 193 al~-~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~ 270 (788)
+++ ..|++..+|..++.++...|++++|...|+++++..|.++ .+|..++.++...|++++|.+.|+++++..|....
T Consensus 312 Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~ 391 (530)
T 2ooe_A 312 AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH 391 (530)
T ss_dssp HTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTH
T ss_pred HHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchH
Confidence 997 7999999999999999999999999999999999999885 68999999999999999999999999999888777
Q ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHH
Q 003891 271 AYNNLGVL-YRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 329 (788)
Q Consensus 271 ~~~~la~~-~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~ 329 (788)
.+...+.+ +...|++++|...|+++++..|++..++.+ ++..+...|+.+++...++
T Consensus 392 ~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~--~~~~~~~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 392 VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLA--YIDYLSHLNEDNNTRVLFE 449 (530)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHH--HHHHHTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHH--HHHHHHhCCCHhhHHHHHH
Confidence 77766665 346899999999999999999999888765 3445566777776655444
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-21 Score=218.23 Aligned_cols=230 Identities=20% Similarity=0.249 Sum_probs=168.6
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 003891 39 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY-DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 117 (788)
Q Consensus 39 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 117 (788)
++++++..+++.....|.++.+++.+|.++...|++ ++|+.+|+++++.+|++..++..+|.+|...|++++|+.+|++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 367788888888888999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHh--hhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003891 118 CLAVSPNFEIAKNNMAIALTDL--GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 195 (788)
Q Consensus 118 al~~~p~~~~~~~~la~~l~~l--g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 195 (788)
+++++|+ ...+..++.++..+ +......|++++|+.+|+++++++|++..++..+|.+|... +|
T Consensus 163 al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------~~----- 228 (474)
T 4abn_A 163 ALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSL--------YF----- 228 (474)
T ss_dssp HHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------HH-----
T ss_pred HHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--------HH-----
Confidence 9999998 45555555554443 11111115566666666666666665555555555555544 00
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003891 196 FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 272 (788)
Q Consensus 196 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~ 272 (788)
..+. ..|++++|+.+|+++++++| +++.++.++|.+|...|++++|++.|+++++++|++..++
T Consensus 229 ----------~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~ 295 (474)
T 4abn_A 229 ----------NTGQ---NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQ 295 (474)
T ss_dssp ----------HTTC---CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ----------hhcc---ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 0000 00556666666666666666 6677777777777777777777777777777777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 003891 273 NNLGVLYRDAGSISLAIDAYEQC 295 (788)
Q Consensus 273 ~~la~~~~~~g~~~eA~~~~~~a 295 (788)
..++.++..+|++++|++.+.+.
T Consensus 296 ~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 296 QREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 77777777777777777766554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=208.65 Aligned_cols=262 Identities=23% Similarity=0.328 Sum_probs=223.3
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYD 75 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~ 75 (788)
|+..|+++++..|++... .+.++..+|.++...|++++|+..++++++. .+....++..+|.++...|+++
T Consensus 24 A~~~~~~al~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 100 (338)
T 3ro2_A 24 GVSFFEAAVQVGTEDLKT---LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFD 100 (338)
T ss_dssp HHHHHHHHHHHCCSCHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhCcccHHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHH
Confidence 789999999999987654 5667899999999999999999999999887 4445788999999999999999
Q ss_pred HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHhhCCCcHHHH
Q 003891 76 TALGCYEKAALERPMY------AEAYCNMGVIYKNRGD--------------------LESAIACYERCLAVSPNFEIAK 129 (788)
Q Consensus 76 ~A~~~~~kal~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~p~~~~~~ 129 (788)
+|+..++++++..+.. ..++..+|.++...|+ +++|+.++++++++.+... ..
T Consensus 101 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~-~~ 179 (338)
T 3ro2_A 101 EAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG-DR 179 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHT-CH
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC-CH
Confidence 9999999999875433 4589999999999999 9999999999987643221 12
Q ss_pred HHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---
Q 003891 130 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC--- 200 (788)
Q Consensus 130 ~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 200 (788)
...+.++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+..+++++...+..
T Consensus 180 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (338)
T 3ro2_A 180 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 259 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcch
Confidence 2346678888999999999999999999999875442 2388999999999999999999999999876554
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003891 201 ---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 267 (788)
Q Consensus 201 ---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 267 (788)
..++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|..++++++++.+.
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 260 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 6788999999999999999999999999875432 458889999999999999999999999998765
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-20 Score=182.04 Aligned_cols=170 Identities=23% Similarity=0.341 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 003891 57 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 136 (788)
Q Consensus 57 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l 136 (788)
++.+|+++|.+|..+|++++|+..|+++++.+|+++.++..+|.+|...|++++|+..+++++...|+....+..++.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-- 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS-- 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH--
Confidence 345555555555555555555555555555555555555555555555555555555555555555554433322222
Q ss_pred HHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 003891 137 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 216 (788)
Q Consensus 137 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 216 (788)
.+...+++++|...+.++++.+|++..++..+|.++..+|++++|++.|+++++.+|.+..++.++|.+|..+|+
T Consensus 82 -----~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 82 -----ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp -----HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred -----HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC
Confidence 222233445555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhhCCC
Q 003891 217 LDKAVECYQMALSIKPN 233 (788)
Q Consensus 217 ~~eA~~~~~~al~~~p~ 233 (788)
+++|+.+|+++++++|+
T Consensus 157 ~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 157 RDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHhCCcc
Confidence 55555555555554443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-20 Score=200.09 Aligned_cols=228 Identities=10% Similarity=0.049 Sum_probs=188.0
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCC
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT-------QDGIQKYYEALK-IDPHYAPAYYNLGVVYSELMQ 73 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~-------~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~ 73 (788)
|+..|+++++.+|.++++|..++..+...+..+...|++ ++|+..|+++++ .+|++..+|..+|.++...|+
T Consensus 35 a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~ 114 (308)
T 2ond_A 35 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK 114 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC
Confidence 568999999999999999888888877766666677886 899999999999 699999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHH
Q 003891 74 YDTALGCYEKAALERPMYAE-AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 152 (788)
Q Consensus 74 ~~~A~~~~~kal~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A 152 (788)
+++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|.....+...+... +...|++++|
T Consensus 115 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~------~~~~~~~~~A 188 (308)
T 2ond_A 115 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME------YYCSKDKSVA 188 (308)
T ss_dssp HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHH------HHTSCCHHHH
T ss_pred HHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH------HHHcCCHHHH
Confidence 99999999999999999886 8999999999999999999999999999888754443222111 1125788888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 153 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF---NP-HCAEACNNLGVIYKDRDNLDKAVECYQMAL 228 (788)
Q Consensus 153 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al 228 (788)
...|+++++.+|+++.++..++.++...|++++|+..|++++.. .| +...+|..++..+...|++++|..++++++
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888875 44 356777777777777888888888888888
Q ss_pred hhCCCCH
Q 003891 229 SIKPNFS 235 (788)
Q Consensus 229 ~~~p~~~ 235 (788)
+..|++.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 8777654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.3e-21 Score=215.74 Aligned_cols=211 Identities=17% Similarity=0.111 Sum_probs=178.2
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 003891 107 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI-NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 185 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 185 (788)
++++++..+++.....|.....+..++.++... |++ ++|+++|+++++.+|++..++..+|.+|...|++++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~-------g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~ 155 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVT-------PDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTS 155 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSS-------SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 356666677777777777777777777776653 477 777777777777778888888888888888888888
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------
Q 003891 186 AIVFYELAFHFNPHCAEACNNLGVIYKDR---------DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ-------- 248 (788)
Q Consensus 186 A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~-------- 248 (788)
|+.+|+++++.+|+ ..++.++|.++... |++++|+.+|+++++++|++..++.++|.+|...
T Consensus 156 A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 156 AHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcccc
Confidence 88888888888888 68888899998888 9999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHH
Q 003891 249 GKMDAAAEMIEKAIAANP---TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLF 325 (788)
Q Consensus 249 g~~~eA~~~l~kal~~~p---~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~ 325 (788)
|++++|+.+|+++++++| +++.+++++|.+|..+|++++|++.|+++++++|++..++.++.. .+...|+.++++
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~--~~~~lg~~~eAi 312 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQ--LLEFLSRLTSLL 312 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH--HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999999999999999988877544 344445555555
Q ss_pred HH
Q 003891 326 EA 327 (788)
Q Consensus 326 ~~ 327 (788)
+.
T Consensus 313 ~~ 314 (474)
T 4abn_A 313 ES 314 (474)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-19 Score=207.35 Aligned_cols=322 Identities=10% Similarity=0.035 Sum_probs=248.2
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH---------------
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGV--------------- 66 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~--------------- 66 (788)
|...|+++++.+|.+... +..++..+...|++++|+..|+++++..| +...|..++.
T Consensus 31 a~~~~e~al~~~P~~~~~-------w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~ 102 (530)
T 2ooe_A 31 ARKTYERLVAQFPSSGRF-------WKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEK 102 (530)
T ss_dssp HHHHHHHHHTTCTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHH
T ss_pred HHHHHHHHHHHCCCCHHH-------HHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHH
Confidence 678999999999999887 55556666778999999999999999888 4555554442
Q ss_pred ---------------------------HHHH---------cCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHH-------
Q 003891 67 ---------------------------VYSE---------LMQYDTALGCYEKAALERPMYA--EAYCNMGVI------- 101 (788)
Q Consensus 67 ---------------------------~~~~---------~g~~~~A~~~~~kal~~~p~~~--~~~~~la~~------- 101 (788)
.... .|++++|..+|+++++ .|... ..|......
T Consensus 103 ~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~ 181 (530)
T 2ooe_A 103 MAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIH 181 (530)
T ss_dssp HHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchh
Confidence 1111 4677888888888887 45431 222111110
Q ss_pred --------------------------------------------------------HHH------CCC----HHHHHHHH
Q 003891 102 --------------------------------------------------------YKN------RGD----LESAIACY 115 (788)
Q Consensus 102 --------------------------------------------------------~~~------~g~----~~~A~~~~ 115 (788)
... .++ ..+++..|
T Consensus 182 ~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y 261 (530)
T 2ooe_A 182 LAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAY 261 (530)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHH
Confidence 000 011 13567789
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHH
Q 003891 116 ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN-------QGVAYYKKALY-YNWHYADAMYNLGVAYGEMLKFDMAI 187 (788)
Q Consensus 116 ~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~-------~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~ 187 (788)
++++..+|.++..|..++..+..........|+++ +|+..|+++++ ..|++..++..++.++...|++++|.
T Consensus 262 ~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~ 341 (530)
T 2ooe_A 262 EQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH 341 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999988888887777665322222357876 99999999997 89999999999999999999999999
Q ss_pred HHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhC
Q 003891 188 VFYELAFHFNPHCA-EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV-YTVQGKMDAAAEMIEKAIAAN 265 (788)
Q Consensus 188 ~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~eA~~~l~kal~~~ 265 (788)
..|+++++..|.+. .+|..++.++.+.|++++|+..|+++++..|.....+...+.+ +...|++++|..+|+++++..
T Consensus 342 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~ 421 (530)
T 2ooe_A 342 SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY 421 (530)
T ss_dssp HHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC
Confidence 99999999999985 6999999999999999999999999999998887777776665 446999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh----hHHhHHHHhhhccCCCchHHHHHHHHHHHH
Q 003891 266 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN----AGQNRLLAMNYINEGHDDKLFEAHRDWGKR 334 (788)
Q Consensus 266 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~----a~~~~lla~~~l~~g~~~~~~~~~~~~~~~ 334 (788)
|+++.+|..++.++...|+.++|...|+++++..|.++. .+.. +.......|+.+.+....++..+.
T Consensus 422 p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~--~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 422 GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR--FLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHH--HHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999877654 3322 122233457777665555444433
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-21 Score=211.14 Aligned_cols=241 Identities=13% Similarity=0.131 Sum_probs=207.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 003891 60 AYYNLGVVYSELMQYDTALGCYEKAALE---RPM---YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 133 (788)
Q Consensus 60 ~~~~lg~~~~~~g~~~~A~~~~~kal~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 133 (788)
.++.+|..+...|++++|+.+|+++++. .++ .+.++..+|.+|...|++++|+.++++++++.+.........+
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 3455999999999999999999999986 222 4689999999999999999999999999998776543344567
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHh-----cC-CCCH
Q 003891 134 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA------DAMYNLGVAYGEMLKFDMAIVFYELAFH-----FN-PHCA 201 (788)
Q Consensus 134 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~-p~~~ 201 (788)
.++..+|.++...|++++|+.+|+++++..+... .++.++|.+|..+|++++|+.+++++++ .+ |...
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 8899999999999999999999999998755332 4899999999999999999999999999 45 7778
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHH
Q 003891 202 EACNNLGVIYKDRDNLDKAVECYQMALSIK-----PNFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAANPTYAEAYN 273 (788)
Q Consensus 202 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~---~~eA~~~l~kal~~~p~~~~~~~ 273 (788)
.++.++|.++..+|++++|+.++++++++. +.....+..+|.++...|+ +++|+.++++. ...+....++.
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~ 343 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHH
Confidence 999999999999999999999999999874 3333346779999999999 88888888876 33344567889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 274 NLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 274 ~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
.+|.+|..+|++++|.++|++++++...
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=9e-20 Score=184.08 Aligned_cols=212 Identities=23% Similarity=0.244 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 104 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~ 104 (788)
.++.+|..++..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++.+|++..++..+|.+|..
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 88 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD 88 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 488899999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCC
Q 003891 105 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH--YADAMYNLGVAYGEMLK 182 (788)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~ 182 (788)
+|++++|+..|+++++++|++......++.++..+|.++...|++++|+..|+++++.+|+ +..++..+|.++...|
T Consensus 89 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~- 167 (228)
T 4i17_A 89 MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG- 167 (228)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH-
T ss_pred cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999887777788888888887788888888888888888877 7777777777776543
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 003891 183 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 244 (788)
Q Consensus 183 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 244 (788)
...++++..+.+.....+ .+......+.+++|+.+|+++++++|++..+...++.+
T Consensus 168 ----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 168 ----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp ----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 334455555554443322 22223333445555555555555555555544444443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.86 E-value=9.3e-20 Score=193.44 Aligned_cols=248 Identities=13% Similarity=0.058 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHC
Q 003891 41 QDGIQKYYEALKIDPHYAPAYYNLGVVYSE-------LMQY-------DTALGCYEKAAL-ERPMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 41 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-------~g~~-------~~A~~~~~kal~-~~p~~~~~~~~la~~~~~~ 105 (788)
++|+..|+++++.+|.++.+|+.+|..+.. .|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 689999999999999999999999998874 5775 899999999999 6999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCh
Q 003891 106 GDLESAIACYERCLAVSPNFEI-AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE-MLKF 183 (788)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~-~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~ 183 (788)
|++++|...|++++++.|.+.. ++..++.++ ...|++++|...|+++++..|....++...+.+... .|++
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-------~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFA-------RRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHH-------HHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHH-------HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCH
Confidence 9999999999999999988764 454444444 445688999999999999888887777766665443 6889
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 184 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI---KP-NFSQSLNNLGVVYTVQGKMDAAAEMIE 259 (788)
Q Consensus 184 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~p-~~~~~~~~la~~~~~~g~~~eA~~~l~ 259 (788)
++|+..|+++++.+|++..++..++.++...|++++|+.+|+++++. .| ....+|..++..+...|++++|...++
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999888888888888888888889999999999998885 44 367788888888888888888888888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHH
Q 003891 260 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 307 (788)
Q Consensus 260 kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~ 307 (788)
++++..|++..... ++.+ ....+.+.++|+++.+..
T Consensus 266 ~a~~~~p~~~~~~~-~~~~-----------~~r~~~l~~~P~~~~~ln 301 (308)
T 2ond_A 266 RRFTAFREEYEGKE-TALL-----------VDRYKFMDLYPCSASELK 301 (308)
T ss_dssp HHHHHTTTTTSSCH-HHHH-----------HTTTCBTTBCSSCHHHHH
T ss_pred HHHHHcccccccch-HHHH-----------HHHHHhcccCCCCHHHHH
Confidence 88888887543221 1111 111256778888877643
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.6e-19 Score=178.89 Aligned_cols=211 Identities=13% Similarity=0.075 Sum_probs=171.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 003891 55 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP-MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 133 (788)
Q Consensus 55 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 133 (788)
+.++..++.+|.++...|++++|+..|+++++.+| .+..+++.+|.++...|++++|+.+|+++++.+|++...+..
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-- 81 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIG-- 81 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHH--
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHH--
Confidence 45679999999999999999999999999999999 899999999999999999999999999999999998765555
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CHHHH
Q 003891 134 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA-------DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--CAEAC 204 (788)
Q Consensus 134 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~ 204 (788)
+|.++...|++++|+..++++++.+|++. .++..+|.++...|++++|++.|+++++.+|+ +..++
T Consensus 82 -----l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 156 (228)
T 4i17_A 82 -----KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDAL 156 (228)
T ss_dssp -----HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred -----HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHH
Confidence 45555557799999999999999999998 56888888888888888888888888888888 77888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003891 205 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 279 (788)
Q Consensus 205 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~ 279 (788)
.++|.++...| ...++++..+.+.....+ .+......+.+++|+.+++++++++|++..+...++.+.
T Consensus 157 ~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 157 YSLGVLFYNNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 88888886543 445666666666554433 233344556677777777777777777777766666554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.9e-21 Score=199.59 Aligned_cols=244 Identities=19% Similarity=0.259 Sum_probs=194.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---
Q 003891 54 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS--- 122 (788)
Q Consensus 54 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 122 (788)
+|....++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++++.
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4556788899999999999999999999999884 56667889999999999999999999999999874
Q ss_pred --CCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003891 123 --PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN--------WHYADAMYNLGVAYGEMLKFDMAIVFYEL 192 (788)
Q Consensus 123 --p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 192 (788)
++.+ ....++..+|.++...|++++|+.+++++++.. +....++..+|.++...|++++|+.++++
T Consensus 103 ~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 103 LGKDHP----AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HCTTCH----HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hCCCCh----HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2222 235677788888888999999999999999874 44567899999999999999999999999
Q ss_pred HHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------C------HHHHHHHHHHHHHcC
Q 003891 193 AFHF--------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN---------F------SQSLNNLGVVYTVQG 249 (788)
Q Consensus 193 al~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~---------~------~~~~~~la~~~~~~g 249 (788)
+++. .|....++..+|.++...|++++|+.+++++++..+. . ...+..++..+...+
T Consensus 179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (311)
T 3nf1_A 179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT 258 (311)
T ss_dssp HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------C
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHH
Confidence 9988 6666789999999999999999999999999976332 1 223444555566677
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 250 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 250 ~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
.+.+|...++++....|....++..+|.+|..+|++++|+++|++++++.|+
T Consensus 259 ~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 259 SFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 7888888999999999999999999999999999999999999999998875
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.7e-20 Score=213.66 Aligned_cols=171 Identities=26% Similarity=0.307 Sum_probs=121.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 003891 54 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 133 (788)
Q Consensus 54 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 133 (788)
.|+++++++++|.+|.++|++++|+.+|+++++++|++..+++++|.+|..+|++++|+++|+++++++|++..++.+++
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 56667777777777777777777777777777777777777777777777777777777777777777777655444443
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 003891 134 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 213 (788)
Q Consensus 134 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 213 (788)
.+ +..+|++++|++.|+++++++|++..++.++|.+|..+|++++|++.|+++++++|++..++.++|.++..
T Consensus 85 ~~-------l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 85 NT-------LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HH-------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HH-------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHh
Confidence 33 33345777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHhhC
Q 003891 214 RDNLDKAVECYQMALSIK 231 (788)
Q Consensus 214 ~g~~~eA~~~~~~al~~~ 231 (788)
+|++++|++.+++++++.
T Consensus 158 ~g~~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVSIV 175 (723)
T ss_dssp TTCCTTHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhC
Confidence 777777777777776654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.3e-20 Score=199.96 Aligned_cols=239 Identities=10% Similarity=0.083 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CH
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKI---DPH---YAPAYYNLGVVYSELMQYDTALGCYEKAALERPM-------YA 92 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~---~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~-------~~ 92 (788)
.++.+|..+...|++++|+..|+++++. .++ .+.+++.+|.+|...|++++|+.+++++++..+. ..
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 4566899999999999999999999987 222 5689999999999999999999999999987433 35
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH-----hC-CCC
Q 003891 93 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY-----YN-WHY 166 (788)
Q Consensus 93 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~-----~~-p~~ 166 (788)
.++..+|.+|...|++++|+.+|++++++.+... .....+.++..+|.++...|++++|+.+++++++ .+ |..
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK-QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 6899999999999999999999999998866442 1234577888999999999999999999999999 45 777
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHH
Q 003891 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-----PHCAEACNNLGVIYKDRDN---LDKAVECYQMALSIKPNFSQSL 238 (788)
Q Consensus 167 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~---~~eA~~~~~~al~~~p~~~~~~ 238 (788)
..++.++|.++...|++++|+.+++++++.. +.....+..+|.++...|+ +++|+.++++. ...+....++
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~ 342 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHH
Confidence 8899999999999999999999999999873 3334446789999999999 88888888876 3334456688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 003891 239 NNLGVVYTVQGKMDAAAEMIEKAIAANP 266 (788)
Q Consensus 239 ~~la~~~~~~g~~~eA~~~l~kal~~~p 266 (788)
..+|.+|...|++++|..++++++++..
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998743
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-19 Score=194.08 Aligned_cols=239 Identities=15% Similarity=0.131 Sum_probs=205.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 003891 60 AYYNLGVVYSELMQYDTALGCYEKAALERP------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 133 (788)
Q Consensus 60 ~~~~lg~~~~~~g~~~~A~~~~~kal~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 133 (788)
.++.+|..+...|++++|+.+|+++++..+ ..+.++..+|.+|...|++++|+.++++++++.+.........+
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 677899999999999999999999998632 24678999999999999999999999999998776443233567
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCCHH
Q 003891 134 IALTDLGTKVKLEGDINQGVAYYKKALYYNWH------YADAMYNLGVAYGEMLKFDMAIVFYELAFH-----FNPHCAE 202 (788)
Q Consensus 134 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~p~~~~ 202 (788)
.++..+|.++...|++++|+++|++++++.+. ...++.++|.+|...|++++|+.+++++++ .+|....
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 88999999999999999999999999987431 245788999999999999999999999999 6787889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHH
Q 003891 203 ACNNLGVIYKDRDNLDKAVECYQMALSIKP-----NFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAANPTYAEAYNN 274 (788)
Q Consensus 203 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~---~~eA~~~l~kal~~~p~~~~~~~~ 274 (788)
++.++|.++..+|++++|+.++++++++.+ .....+..++.++...++ +.+|+.++++. ...+.....+..
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 341 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHH
Confidence 999999999999999999999999999843 334466778888888888 88888888872 223344677889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC
Q 003891 275 LGVLYRDAGSISLAIDAYEQCLKID 299 (788)
Q Consensus 275 la~~~~~~g~~~eA~~~~~~al~l~ 299 (788)
+|.+|...|++++|..+|++++++.
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999998764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.3e-20 Score=192.90 Aligned_cols=241 Identities=24% Similarity=0.296 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Q 003891 23 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE------- 87 (788)
Q Consensus 23 la~~l~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~------- 87 (788)
.+.++..+|..+...|++++|+.+|+++++. .|....++..+|.++...|++++|+.+++++++.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4566899999999999999999999999995 5667889999999999999999999999999987
Q ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH
Q 003891 88 -RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS-----PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 161 (788)
Q Consensus 88 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~ 161 (788)
.|....++..+|.++...|++++|+.++++++++. ++.+ ....++..+|.++...|++++|+.+++++++
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP----DVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35567899999999999999999999999999875 3333 2356777888888889999999999999999
Q ss_pred h--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---------C------HHHHHHHHHHHHHcCCHH
Q 003891 162 Y--------NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH---------C------AEACNNLGVIYKDRDNLD 218 (788)
Q Consensus 162 ~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~------~~~~~~la~~~~~~g~~~ 218 (788)
. .|....++..+|.++...|++++|+..++++++..+. . ...+...+..+...+.+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFG 261 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHH
Confidence 8 5666778999999999999999999999999975322 1 334444555566677788
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003891 219 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 267 (788)
Q Consensus 219 eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 267 (788)
+|...++++....|....++..+|.+|...|++++|+++|++++++.|+
T Consensus 262 ~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 262 EYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 8888999999989999999999999999999999999999999998764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-18 Score=192.12 Aligned_cols=280 Identities=15% Similarity=0.118 Sum_probs=175.7
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----C
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT---QDGIQKYYEALKIDPHYAPAYYNLGVVYSELM-----Q 73 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----~ 73 (788)
|++.|+++.+. ++.++ ++.+|.++...|++ ++|+.+|+++++. ++.+++.+|.++...+ +
T Consensus 22 A~~~~~~aa~~--g~~~A-------~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 22 AQQNYQQLAEL--GYSEA-------QVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHH--TCCTG-------GGTCC-------------------------------CHHHHHHHHHTC--CCHHH
T ss_pred HHHHHHHHHHC--CCHHH-------HHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcC
Confidence 56777777665 45566 34444455555666 8888888888865 6677888888666655 7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHhhCCCcHHHHHHHH-----------------
Q 003891 74 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES---AIACYERCLAVSPNFEIAKNNMA----------------- 133 (788)
Q Consensus 74 ~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~p~~~~~~~~la----------------- 133 (788)
+++|+.+|+++++..+ +.+++.+|.+|...+..++ +.+.+.++..... +.+...++
T Consensus 90 ~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 90 HHEAESLLKKAFANGE--GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY--PEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHHHTTC--SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC--TTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC--HHHHHHHHHHHHcCCCcccCHHHHH
Confidence 7888888888877433 3356666666665543222 2222222221111 11111111
Q ss_pred -----------HHHHHhhhhhhhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHh
Q 003891 134 -----------IALTDLGTKVKLEG---DINQGVAYYKKALYYNWHYADAMYNLGVAYGEM----LKFDMAIVFYELAFH 195 (788)
Q Consensus 134 -----------~~l~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~ 195 (788)
.++..+|.++...| ++++|+.+|+++.+..+.....++++|.+|... +++++|+.+|+++.
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa- 244 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA- 244 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-
Confidence 13344555666667 888888888888888888888888888888665 68888888888887
Q ss_pred cCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCC
Q 003891 196 FNPHCAEACNNLGVI-Y--KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG-----KMDAAAEMIEKAIAANPT 267 (788)
Q Consensus 196 ~~p~~~~~~~~la~~-~--~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g-----~~~eA~~~l~kal~~~p~ 267 (788)
|.++.+++++|.+ + ...+++++|+.+|+++.+. .++.+++++|.+|. .| ++++|+.+|+++. +.
T Consensus 245 --~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g 316 (452)
T 3e4b_A 245 --PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GR 316 (452)
T ss_dssp --GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TT
T ss_pred --CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CC
Confidence 7788888888888 4 4678888888888888754 47888888888887 55 8888888888887 77
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChhhHHh
Q 003891 268 YAEAYNNLGVLYRD----AGSISLAIDAYEQCLKIDPDSRNAGQN 308 (788)
Q Consensus 268 ~~~~~~~la~~~~~----~g~~~eA~~~~~~al~l~p~~~~a~~~ 308 (788)
++.++++||.+|.. ..++++|+.+|+++.+. .+..+..+
T Consensus 317 ~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~ 359 (452)
T 3e4b_A 317 EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFA 359 (452)
T ss_dssp CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHH
Confidence 88888888888876 34888888888888764 44555554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.5e-18 Score=185.22 Aligned_cols=281 Identities=12% Similarity=-0.019 Sum_probs=229.2
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q 003891 20 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-----PAYYNLGVVYSELMQYDTALGCYEKAALERPMY--- 91 (788)
Q Consensus 20 ~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~--- 91 (788)
....+.++..+|..+...|++++|+..+++++...|... .++..+|.++...|++++|...++++++..+..
T Consensus 10 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 89 (373)
T 1hz4_A 10 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 89 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence 345677788899999999999999999999999887653 267899999999999999999999999875432
Q ss_pred ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHH-HHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCC--
Q 003891 92 ---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA-KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH-- 165 (788)
Q Consensus 92 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~-- 165 (788)
..++..+|.++...|++++|+.++++++++.+..... ....+.++..+|.++...|++++|..+++++++..+.
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 169 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 169 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC
Confidence 2457889999999999999999999999875321100 0122456667788888899999999999999998775
Q ss_pred ---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--C-HHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-
Q 003891 166 ---YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--C-AEAC----NNLGVIYKDRDNLDKAVECYQMALSIKPNF- 234 (788)
Q Consensus 166 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~-~~~~----~~la~~~~~~g~~~eA~~~~~~al~~~p~~- 234 (788)
...++..+|.++...|++++|...+++++...+. . .... ..++.++...|++++|..++++++...+..
T Consensus 170 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 249 (373)
T 1hz4_A 170 PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN 249 (373)
T ss_dssp GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcc
Confidence 2467889999999999999999999999876322 2 1111 134566889999999999999998876643
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003891 235 ---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 300 (788)
Q Consensus 235 ---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p 300 (788)
...+..++.++...|++++|...+++++...+. ...++..+|.++...|++++|...+++++.+.+
T Consensus 250 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 250 HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 336788999999999999999999999887432 235788899999999999999999999998755
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=3.3e-19 Score=187.61 Aligned_cols=245 Identities=15% Similarity=0.119 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 003891 42 DGIQKYYEALKIDPHYAPAYYNLGVVYSEL--M-QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 118 (788)
Q Consensus 42 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--g-~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 118 (788)
+|.++++++-+.-+.....+ .++.. . ++++|+.+|+++ |.+|...|++++|+.+|+++
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence 46666777766655432211 11122 1 478888888776 55677888888888888888
Q ss_pred HhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CChHHHHHHHH
Q 003891 119 LAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEM-LKFDMAIVFYE 191 (788)
Q Consensus 119 l~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~ 191 (788)
+++.+... .....+.++..+|.++...|++++|+.+|++++++.+.. ..++.++|.+|... |++++|+.+|+
T Consensus 64 l~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~ 142 (292)
T 1qqe_A 64 ADYQKKAG-NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142 (292)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHhC-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 87754321 112335677777888888888888888888888876543 45788899999996 99999999999
Q ss_pred HHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHH
Q 003891 192 LAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ-------SLNNLGVVYTVQGKMDAAAEMI 258 (788)
Q Consensus 192 ~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~eA~~~l 258 (788)
+++++.|.. ..++.++|.++..+|++++|+.+|+++++..|++.. ++.++|.++..+|++++|+.+|
T Consensus 143 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 222 (292)
T 1qqe_A 143 LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999887643 567889999999999999999999999998877643 6788999999999999999999
Q ss_pred HHHHHhCCCCHHH-----HHHHHHHHH--HcCCHHHHHHHHHHHHhhCCCChhhH
Q 003891 259 EKAIAANPTYAEA-----YNNLGVLYR--DAGSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 259 ~kal~~~p~~~~~-----~~~la~~~~--~~g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
+++++++|+.... +..++..+. ..+++++|+..|++++.++|.+....
T Consensus 223 ~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 223 QEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp HGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 9999998886543 445666664 45789999999999999988764443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.4e-18 Score=187.89 Aligned_cols=303 Identities=14% Similarity=0.066 Sum_probs=216.2
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG-----NTQDGIQKYYEALKIDPHYAPAYYNLGVVYS------- 69 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~------- 69 (788)
|++.|+++++. ++.+ ++.+|.++...+ ++++|+.+|+++++..+ +.+++.+|.+|.
T Consensus 57 A~~~~~~A~~~---~~~A-------~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~~~~~~~~ 124 (452)
T 3e4b_A 57 AEATYRAAADT---SPRA-------QARLGRLLAAKPGATEAEHHEAESLLKKAFANGE--GNTLIPLAMLYLQYPHSFP 124 (452)
T ss_dssp -----------------C-------HHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC--SSCHHHHHHHHHHCGGGCT
T ss_pred HHHHHHHHHhC---CHHH-------HHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhCCCCCC
Confidence 66778888765 4445 455565444444 77889999998887533 334555555544
Q ss_pred ----------------------------HcCCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Q 003891 70 ----------------------------ELMQY----DTALGCYEKAALERPMYAEAYCNMGVIYKNRG---DLESAIAC 114 (788)
Q Consensus 70 ----------------------------~~g~~----~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g---~~~~A~~~ 114 (788)
..+.+ +++..+++.+... ++.+++.+|.+|...| ++++|+++
T Consensus 125 ~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~---~~~a~~~Lg~~~~~~g~~~~~~~A~~~ 201 (452)
T 3e4b_A 125 NVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNT---TDICYVELATVYQKKQQPEQQAELLKQ 201 (452)
T ss_dssp TCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT---CTTHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCcccHHHHHHH
Confidence 44422 2333333333333 3449999999999999 99999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-H--HHcCChHHHHHHHH
Q 003891 115 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA-Y--GEMLKFDMAIVFYE 191 (788)
Q Consensus 115 ~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~--~~~g~~~~A~~~~~ 191 (788)
|+++.+..+.....+++++.++... ....+++++|+.+|+++. |.++.+++++|.+ + ...+++++|+.+|+
T Consensus 202 ~~~aa~~g~~~a~~~~~Lg~~y~~g---~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~ 275 (452)
T 3e4b_A 202 MEAGVSRGTVTAQRVDSVARVLGDA---TLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLD 275 (452)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHTCG---GGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC---CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 9999999998876556666555321 123479999999999998 8999999999998 4 57899999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 003891 192 LAFHFNPHCAEACNNLGVIYKDRD-----NLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAI 262 (788)
Q Consensus 192 ~al~~~p~~~~~~~~la~~~~~~g-----~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~kal 262 (788)
++.+. .++.+++++|.+|. .| ++++|+.+|+++. +.++.+++++|.+|.. ..++++|+.+|+++.
T Consensus 276 ~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 349 (452)
T 3e4b_A 276 NGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAA 349 (452)
T ss_dssp HHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHH
T ss_pred HHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 99865 48999999999998 55 9999999999998 8999999999999887 459999999999998
Q ss_pred HhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHHHHHHH
Q 003891 263 AANPTYAEAYNNLGVLYRD----AGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRF 335 (788)
Q Consensus 263 ~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~~~~~~ 335 (788)
+. .++.+.++||.+|.. ..++++|..+|+++.+..+ ..+...+......+...+..++....++|...-
T Consensus 350 ~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~--~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 350 RN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT--PEANDLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp TT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 74 567889999999985 5699999999999998754 444443333333333333445555666665543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-18 Score=178.12 Aligned_cols=217 Identities=12% Similarity=0.060 Sum_probs=168.7
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHH
Q 003891 51 LKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI 127 (788)
Q Consensus 51 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 127 (788)
.+.+|.++..++.+|..++..|++++|+..|+++++..|.+ ..+++.+|.+|...|++++|+..|+++++..|+++.
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 35678899999999999999999999999999999999998 899999999999999999999999999999886542
Q ss_pred HHHHHHHHHHHhhhhhhh--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 003891 128 AKNNMAIALTDLGTKVKL--------EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH 199 (788)
Q Consensus 128 ~~~~la~~l~~lg~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 199 (788)
. ..+++.+|.++.. .|++++|+..|+++++.+|++..+...+..+....++
T Consensus 88 ~----~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~----------------- 146 (261)
T 3qky_A 88 V----PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK----------------- 146 (261)
T ss_dssp H----HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH-----------------
T ss_pred h----HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH-----------------
Confidence 1 3445556666666 7799999999999999998876554443332221111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCC
Q 003891 200 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN---FSQSLNNLGVVYTVQ----------GKMDAAAEMIEKAIAANP 266 (788)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~~~eA~~~l~kal~~~p 266 (788)
....++.+|.+|...|++++|+..|+++++..|+ ...+++.+|.+|..+ |++++|+..|+++++..|
T Consensus 147 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 147 LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 1234678888888888888888888888888887 456888888888866 888888888888888888
Q ss_pred CCH---HHHHHHHHHHHHcCCHHHH
Q 003891 267 TYA---EAYNNLGVLYRDAGSISLA 288 (788)
Q Consensus 267 ~~~---~~~~~la~~~~~~g~~~eA 288 (788)
+++ .+...++.++..+++++++
T Consensus 227 ~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 227 DSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp TCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CChHHHHHHHHHHHHHHHHHHhhhh
Confidence 874 4555666666666665543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-17 Score=175.22 Aligned_cols=235 Identities=11% Similarity=-0.004 Sum_probs=203.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHH
Q 003891 75 DTALGCYEKAALERPMYAEAYCNMGVIYKNRG--DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 152 (788)
Q Consensus 75 ~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A 152 (788)
++|+..+++++.++|++..+|+..+.++...+ +++++++.+++++..+|++..+|.....++..+.......++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 57777777788888887778888887777777 8888888888888888888888877777773332211113688999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC------HHHHHHHH
Q 003891 153 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFD--MAIVFYELAFHFNPHCAEACNNLGVIYKDRDN------LDKAVECY 224 (788)
Q Consensus 153 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------~~eA~~~~ 224 (788)
+++++++++.+|.+..+|...+.++...|.++ +++++++++++.+|.+..+|...+.++...++ ++++++++
T Consensus 130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~ 209 (306)
T 3dra_A 130 FDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYV 209 (306)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHH
Confidence 99999999999999999999999999999998 99999999999999999999999999999987 99999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hC
Q 003891 225 QMALSIKPNFSQSLNNLGVVYTVQGKMDA-AAEMIEKAIAAN---PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK-ID 299 (788)
Q Consensus 225 ~~al~~~p~~~~~~~~la~~~~~~g~~~e-A~~~l~kal~~~---p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-l~ 299 (788)
++++..+|++..+|+.++.++...|+..+ ...+++++++++ +.++.++..++.+|.+.|+.++|+++|+++.+ ++
T Consensus 210 ~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~D 289 (306)
T 3dra_A 210 KDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYN 289 (306)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999998555 556778777776 88899999999999999999999999999996 89
Q ss_pred CCChhhHHhH
Q 003891 300 PDSRNAGQNR 309 (788)
Q Consensus 300 p~~~~a~~~~ 309 (788)
|-....+..+
T Consensus 290 pir~~yW~~~ 299 (306)
T 3dra_A 290 PIRSNFWDYQ 299 (306)
T ss_dssp GGGHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 9888777654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-17 Score=173.23 Aligned_cols=238 Identities=13% Similarity=0.028 Sum_probs=217.8
Q ss_pred HHHcCCh-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHC-
Q 003891 34 LKLAGNT-QDGIQKYYEALKIDPHYAPAYYNLGVVYSELM--QYDTALGCYEKAALERPMYAEAYCNMGVIY----KNR- 105 (788)
Q Consensus 34 ~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~kal~~~p~~~~~~~~la~~~----~~~- 105 (788)
....|.+ ++|+.++.+++.++|++..+|+..+.++..++ ++++++.++++++..+|++..+|+..+.++ ...
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhcc
Confidence 3445555 79999999999999999999999999999999 999999999999999999999999999999 777
Q ss_pred --CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003891 106 --GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDIN--QGVAYYKKALYYNWHYADAMYNLGVAYGEML 181 (788)
Q Consensus 106 --g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 181 (788)
+++++++++++++++.+|++..+|.....++..++ .++ +++++++++++.+|.+..+|...+.++...+
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~-------~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFD-------LHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKK 194 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-------CTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSG
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-------ccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence 89999999999999999999999998888887765 566 9999999999999999999999999999998
Q ss_pred C------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCH
Q 003891 182 K------FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK-AVECYQMALSIK---PNFSQSLNNLGVVYTVQGKM 251 (788)
Q Consensus 182 ~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e-A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~ 251 (788)
+ ++++++++++++..+|++..+|+.++.++...|+..+ ...+++++++.. +.++.++..++.++.+.|+.
T Consensus 195 ~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~ 274 (306)
T 3dra_A 195 HLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY 274 (306)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred ccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence 7 9999999999999999999999999999999998555 556777777766 88999999999999999999
Q ss_pred HHHHHHHHHHHH-hCCCCHHHHHHHHHH
Q 003891 252 DAAAEMIEKAIA-ANPTYAEAYNNLGVL 278 (788)
Q Consensus 252 ~eA~~~l~kal~-~~p~~~~~~~~la~~ 278 (788)
++|+++|+++.+ .+|-....|...+..
T Consensus 275 ~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 275 NESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 999999999997 799999988877654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-18 Score=182.76 Aligned_cols=251 Identities=13% Similarity=0.042 Sum_probs=197.7
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHc--C-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLA--G-NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 78 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~--g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 78 (788)
|.++++++-+..+..... + .++.. + ++++|+.+|+++ |.+|...|++++|+
T Consensus 4 a~~~~~~a~k~~~~~~~~--------~----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~ 57 (292)
T 1qqe_A 4 PVELLKRAEKKGVPSSGF--------M----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAG 57 (292)
T ss_dssp HHHHHHHHHHHSSCCCTH--------H----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHH
T ss_pred HHHHHHHHHHHhCcCCCc--------c----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHH
Confidence 556777777776653222 1 11222 2 589999999987 66788999999999
Q ss_pred HHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhc-CCHHH
Q 003891 79 GCYEKAALERPM------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE-GDINQ 151 (788)
Q Consensus 79 ~~~~kal~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~-g~~~~ 151 (788)
.+|++++++.+. .+.++.++|.+|..+|++++|+.+|++++++.+.... ....+.++..+|.++... |++++
T Consensus 58 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-~~~~a~~~~~lg~~~~~~lg~~~~ 136 (292)
T 1qqe_A 58 DSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-FRRGANFKFELGEILENDLHDYAK 136 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhcCHHH
Confidence 999999987432 2678999999999999999999999999998765321 223466788899999986 99999
Q ss_pred HHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHcCCHH
Q 003891 152 GVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE-------ACNNLGVIYKDRDNLD 218 (788)
Q Consensus 152 A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~ 218 (788)
|+.+|++++++.|.. ..++.++|.++..+|++++|+.+|+++++..|++.. ++.++|.++..+|+++
T Consensus 137 A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 216 (292)
T 1qqe_A 137 AIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAV 216 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999987754 467899999999999999999999999999887543 6889999999999999
Q ss_pred HHHHHHHHHHhhCCCCHH-----HHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003891 219 KAVECYQMALSIKPNFSQ-----SLNNLGVVYT--VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 279 (788)
Q Consensus 219 eA~~~~~~al~~~p~~~~-----~~~~la~~~~--~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~ 279 (788)
+|+.+|+++++++|+... .+..++..+. ..+++++|+..|++++.++|....++..+-..+
T Consensus 217 ~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 217 AAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 999999999999998655 3455666654 457899999999999999887766666655544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-18 Score=189.08 Aligned_cols=239 Identities=15% Similarity=0.146 Sum_probs=203.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------C
Q 003891 25 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDP------HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM-------Y 91 (788)
Q Consensus 25 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~-------~ 91 (788)
..++.+|..+...|++++|+..|+++++..+ ..+.+++.+|.+|...|++++|+.+++++++..+. .
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 3577889999999999999999999998732 24678999999999999999999999999986432 2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH-----hCCCC
Q 003891 92 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY-----YNWHY 166 (788)
Q Consensus 92 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~ 166 (788)
..++..+|.+|...|++++|+++|++++++.+.... ....+.++..+|.++...|++++|+.+++++++ .+|..
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 260 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN-DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence 568899999999999999999999999997543221 124577888999999999999999999999999 67777
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHH
Q 003891 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-----PHCAEACNNLGVIYKDRDN---LDKAVECYQMALSIKPNFSQSL 238 (788)
Q Consensus 167 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~---~~eA~~~~~~al~~~p~~~~~~ 238 (788)
..++..+|.++...|++++|+.+++++++.. +.....+..++.++...++ +.+|+.++++. ...+.....+
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~ 339 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHH
Confidence 8899999999999999999999999999984 3345567788888888888 88888888872 2233445678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003891 239 NNLGVVYTVQGKMDAAAEMIEKAIAAN 265 (788)
Q Consensus 239 ~~la~~~~~~g~~~eA~~~l~kal~~~ 265 (788)
..+|.+|...|++++|+.+|+++++..
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999998753
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.2e-18 Score=174.01 Aligned_cols=216 Identities=18% Similarity=0.172 Sum_probs=176.1
Q ss_pred HHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003891 10 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYEKAAL 86 (788)
Q Consensus 10 L~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~ 86 (788)
.+.+|.+... ++.+|..++..|++++|+..|+++++.+|++ ..+++.+|.++...|++++|+..|+++++
T Consensus 8 ~~~~~~~~~~-------~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~ 80 (261)
T 3qky_A 8 GRLRHSSPQE-------AFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ 80 (261)
T ss_dssp ---CCSSHHH-------HHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHH-------HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3456666655 7888999999999999999999999999998 99999999999999999999999999999
Q ss_pred hCCCC---HHHHHHHHHHHHH--------CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHH
Q 003891 87 ERPMY---AEAYCNMGVIYKN--------RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 155 (788)
Q Consensus 87 ~~p~~---~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~ 155 (788)
..|++ ..+++.+|.++.. .|++++|+..|+++++.+|++......+..+...
T Consensus 81 ~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~----------------- 143 (261)
T 3qky_A 81 IYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIREL----------------- 143 (261)
T ss_dssp HCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH-----------------
T ss_pred HCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHH-----------------
Confidence 98854 6789999999999 9999999999999999999876443222111100
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHc----------CCHHHHHH
Q 003891 156 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH---CAEACNNLGVIYKDR----------DNLDKAVE 222 (788)
Q Consensus 156 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~~~eA~~ 222 (788)
.+.....++.+|.+|...|++++|+..|+++++..|+ ...+++.+|.+|... |++++|+.
T Consensus 144 -------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~ 216 (261)
T 3qky_A 144 -------RAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVE 216 (261)
T ss_dssp -------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHH
Confidence 0111234778889999999999999999999988887 467888999988876 88899999
Q ss_pred HHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHH
Q 003891 223 CYQMALSIKPNFS---QSLNNLGVVYTVQGKMDAAAE 256 (788)
Q Consensus 223 ~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~ 256 (788)
.|+++++..|+++ .+...++.++...++++++..
T Consensus 217 ~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~~ 253 (261)
T 3qky_A 217 LYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDAS 253 (261)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 9999999999884 466777888888887776543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.9e-18 Score=200.85 Aligned_cols=187 Identities=14% Similarity=-0.011 Sum_probs=158.2
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Q 003891 53 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA--------LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124 (788)
Q Consensus 53 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 124 (788)
.+|+++.+++..+ ...|++++|++.+++++ +.+|++..++..+|.++...|++++|+..|+++++.+|+
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 465 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW 465 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc
Confidence 3677777777766 77889999999999999 888999999999999999999999999999999999998
Q ss_pred cHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHH
Q 003891 125 FEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 204 (788)
Q Consensus 125 ~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 204 (788)
+..++..++.++.. .|++++|+..|+++++++|++..+++++|.++...|++++ ++.|+++++.+|++..++
T Consensus 466 ~~~a~~~lg~~~~~-------~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~ 537 (681)
T 2pzi_A 466 RWRLVWYRAVAELL-------TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAA 537 (681)
T ss_dssp CHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHH
T ss_pred hHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHH
Confidence 87666555555444 5699999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 003891 205 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 250 (788)
Q Consensus 205 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 250 (788)
+++|.++..+|++++|+..|+++++++|++..++.++|.++...++
T Consensus 538 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 538 FGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999989999999998877665
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-17 Score=160.09 Aligned_cols=173 Identities=18% Similarity=0.235 Sum_probs=165.8
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003891 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 212 (788)
Q Consensus 133 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 212 (788)
+..+..+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45667778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 213 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 292 (788)
Q Consensus 213 ~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 292 (788)
..|++++|+.+++++++..|.+..++..+|.++...|++++|+.+++++++..|+++.++..+|.++...|++++|..++
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCChhh
Q 003891 293 EQCLKIDPDSRNA 305 (788)
Q Consensus 293 ~~al~l~p~~~~a 305 (788)
+++++++|++...
T Consensus 168 ~~~~~~~~~~~~~ 180 (186)
T 3as5_A 168 KKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHCCCGG
T ss_pred HHHHHcCCCchhh
Confidence 9999999987654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-17 Score=196.51 Aligned_cols=187 Identities=14% Similarity=-0.011 Sum_probs=167.6
Q ss_pred cCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 12 ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL--------KIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 83 (788)
Q Consensus 12 ~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~k 83 (788)
.+|+++.+.. ..| ...|++++|++.|++++ +.+|++..+++.+|.++...|++++|+..|++
T Consensus 389 ~~p~~~~a~~-------~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 458 (681)
T 2pzi_A 389 VDPTDVAASV-------LQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDD 458 (681)
T ss_dssp CCTTSTTHHH-------HHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCCcchHH-------hhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4677766633 233 67899999999999999 89999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhC
Q 003891 84 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 163 (788)
Q Consensus 84 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~ 163 (788)
+++.+|++..+++++|.++...|++++|++.|+++++++|++...+.+++.++.. .|++++ +..|+++++.+
T Consensus 459 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~-------~g~~~~-~~~~~~al~~~ 530 (681)
T 2pzi_A 459 LAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAEL-------AGNTDE-HKFYQTVWSTN 530 (681)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH-------HTCCCT-TCHHHHHHHHC
T ss_pred HhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-------cCChHH-HHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999998776666555554 569999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 003891 164 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 216 (788)
Q Consensus 164 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 216 (788)
|++..+++++|.++..+|++++|++.|+++++++|++..++.++|.++...++
T Consensus 531 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 531 DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999999999988666
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.7e-18 Score=161.40 Aligned_cols=146 Identities=20% Similarity=0.282 Sum_probs=98.0
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 003891 139 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLD 218 (788)
Q Consensus 139 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 218 (788)
||.++..+|++++|+..+++++..+|+++..++.+|.+|...|++++|++.|+++++++|+++.++..+|.++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 45556666677777777777776666666666677777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 003891 219 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM-IEKAIAANPTYAEAYNNLGVLYRDAGS 284 (788)
Q Consensus 219 eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~-l~kal~~~p~~~~~~~~la~~~~~~g~ 284 (788)
+|+.+|+++++++|+++.++.++|.+|...|++++|.+. ++++++++|+++.++..++.++..+|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 777777777777777777777777777777766655543 466777777777766666666666554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-16 Score=172.04 Aligned_cols=275 Identities=14% Similarity=0.005 Sum_probs=220.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 003891 58 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYA-----EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 132 (788)
Q Consensus 58 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 132 (788)
..++..+|.++...|++++|+..+++++...|... .++..+|.++...|++++|+..+++++++.+..... ...
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~ 92 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW-HYA 92 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-HHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH-HHH
Confidence 45677889999999999999999999999877542 368899999999999999999999999986654322 234
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----
Q 003891 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYN--------WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH----- 199 (788)
Q Consensus 133 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----- 199 (788)
+.++..+|.++...|++++|+.+++++++.. |....++.++|.++...|++++|...+++++...+.
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 5667888999999999999999999999874 234557888999999999999999999999998764
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q 003891 200 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NF-SQSL----NNLGVVYTVQGKMDAAAEMIEKAIAANPTY---- 268 (788)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~-~~~~----~~la~~~~~~g~~~eA~~~l~kal~~~p~~---- 268 (788)
...++..+|.++...|++++|..++++++...+ .. .... ..++.++...|++++|..++++++...+..
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 252 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 252 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh
Confidence 356788999999999999999999999987732 22 2211 134566889999999999999998876643
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh----hhHHhHHHHhhhccCCCchHHHHHHHHHHH
Q 003891 269 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR----NAGQNRLLAMNYINEGHDDKLFEAHRDWGK 333 (788)
Q Consensus 269 ~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~----~a~~~~lla~~~l~~g~~~~~~~~~~~~~~ 333 (788)
...+..++.++...|++++|...+++++...+... .......++..+...|+.+++....++...
T Consensus 253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34678899999999999999999999988755422 112334567777888888887766555443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=9.7e-18 Score=173.59 Aligned_cols=225 Identities=18% Similarity=0.233 Sum_probs=175.6
Q ss_pred cCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCcHHHHHHHHHHHH
Q 003891 71 LMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS-----PNFEIAKNNMAIALT 137 (788)
Q Consensus 71 ~g~~~~A~~~~~kal~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~l~ 137 (788)
.|++++|+.+|+++++. .|....++..+|.++...|++++|+.++++++++. ++.+ ..+.++.
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~ 89 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP----AVAATLN 89 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH----HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch----HHHHHHH
Confidence 45555666666666552 24557788889999999999999999999988874 3333 2356778
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCCH
Q 003891 138 DLGTKVKLEGDINQGVAYYKKALYY--------NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------NPHCA 201 (788)
Q Consensus 138 ~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~ 201 (788)
.+|.++...|++++|+.+++++++. +|....++..+|.++...|++++|+.+++++++. .|...
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 8888888999999999999999988 4566778999999999999999999999999998 66678
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCC
Q 003891 202 EACNNLGVIYKDRDNLDKAVECYQMALSI---------KPNFSQSLNNLGVVYTVQGK------MDAAAEMIEKAIAANP 266 (788)
Q Consensus 202 ~~~~~la~~~~~~g~~~eA~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~------~~eA~~~l~kal~~~p 266 (788)
.++..+|.++...|++++|+.+++++++. .+.....+..++..+...+. +.++...++......|
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH
Confidence 89999999999999999999999999986 34455577777777665444 4444444444444456
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 003891 267 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 299 (788)
Q Consensus 267 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~ 299 (788)
....++..+|.+|..+|++++|+.+|++++++.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 667889999999999999999999999998763
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-17 Score=164.32 Aligned_cols=168 Identities=16% Similarity=0.145 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHhCC
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN----------------LGVVYSELMQYDTALGCYEKAALERP 89 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------lg~~~~~~g~~~~A~~~~~kal~~~p 89 (788)
.++..|..+...|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|+++++.+|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 46778888888999999999999999999999888888 88888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHH
Q 003891 90 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA 169 (788)
Q Consensus 90 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 169 (788)
++..++..+|.++...|++++|+..|+++++++|++..++..++.++...+ ..+...+...+++++...| ...+
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~a 159 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA-----EQEKKKLETDYKKLSSPTK-MQYA 159 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-----HHHHHHHHHHHC---CCCH-HHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHhCCCc-hhHH
Confidence 888888888888888888888888888888888888777777776665544 1234455666666543221 1234
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 003891 170 MYNLGVAYGEMLKFDMAIVFYELAFHFNPH 199 (788)
Q Consensus 170 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 199 (788)
++.+|.++...|++++|+..|+++++++|+
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 566676777777777777777777777775
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-15 Score=158.38 Aligned_cols=240 Identities=11% Similarity=0.065 Sum_probs=149.3
Q ss_pred HHcCChH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 35 KLAGNTQ-DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ----------YDTALGCYEKAALERPMYAEAYCNMGVIYK 103 (788)
Q Consensus 35 ~~~g~~~-~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~kal~~~p~~~~~~~~la~~~~ 103 (788)
...|.+. +|+.++.+++..+|++..+|+..+.++...+. +++++.++++++..+|.+..+|...+.++.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 3456654 67888888888888888888888888776665 567777777777777777777777777777
Q ss_pred HCCC--HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003891 104 NRGD--LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD-INQGVAYYKKALYYNWHYADAMYNLGVAYGEM 180 (788)
Q Consensus 104 ~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 180 (788)
..++ +++++.++.++++.+|.+..+|.....++..++ . ++++++++.++++.+|.+..+|..++.++...
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~-------~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAA-------VAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-------CCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-------cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 7773 777777777777777777777766666665544 3 46777777777777777777777777776665
Q ss_pred --------------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003891 181 --------------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR-DNLDKAVECYQMALSIKPNFSQSLNNLGVVY 245 (788)
Q Consensus 181 --------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~p~~~~~~~~la~~~ 245 (788)
+.++++++++.+++..+|++..+|+.+..++... |... ++ -
T Consensus 193 ~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~----------------------~~--~ 248 (331)
T 3dss_A 193 HPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE----------------------LS--V 248 (331)
T ss_dssp SCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG----------------------CC--H
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc----------------------cc--h
Confidence 3355555555555555555555555444443333 1000 00 0
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCCCChhh
Q 003891 246 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR---DAGSISLAIDAYEQCLKIDPDSRNA 305 (788)
Q Consensus 246 ~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~---~~g~~~eA~~~~~~al~l~p~~~~a 305 (788)
...+.++++++.+++++++.|++.-.+..++.+.. ..|..++...++.+.+++||-....
T Consensus 249 ~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~ 311 (331)
T 3dss_A 249 EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 311 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhH
Confidence 00133555555555555555555433333332222 2345566666666666666654443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=171.40 Aligned_cols=227 Identities=22% Similarity=0.259 Sum_probs=182.5
Q ss_pred HHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHH
Q 003891 35 KLAGNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYAEAYCNM 98 (788)
Q Consensus 35 ~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~--------~p~~~~~~~~l 98 (788)
...|++++|+.+|+++++. .|....++..+|.++...|++++|+.+++++++. .|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3568888899999988884 3556889999999999999999999999999987 35567899999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhC-----CCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh--------CCC
Q 003891 99 GVIYKNRGDLESAIACYERCLAVS-----PNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY--------NWH 165 (788)
Q Consensus 99 a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~ 165 (788)
|.++...|++++|+.+|++++++. ++++ ....++..+|.++...|++++|+.+++++++. .|.
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 167 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP----DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN 167 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 999999999999999999999883 3322 23566777888888899999999999999998 666
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhh
Q 003891 166 YADAMYNLGVAYGEMLKFDMAIVFYELAFHF---------NPHCAEACNNLGVIYKDRDN------LDKAVECYQMALSI 230 (788)
Q Consensus 166 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~------~~eA~~~~~~al~~ 230 (788)
...++..+|.++...|++++|+..++++++. .+.....+..++..+...+. +.++...++.....
T Consensus 168 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (283)
T 3edt_B 168 VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD 247 (283)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC
Confidence 6788999999999999999999999999986 44556677777777766554 33444444444334
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003891 231 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 265 (788)
Q Consensus 231 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~ 265 (788)
.|....++..+|.+|..+|++++|+.+++++++..
T Consensus 248 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 248 SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 45667789999999999999999999999998753
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-16 Score=152.01 Aligned_cols=98 Identities=16% Similarity=0.216 Sum_probs=42.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 106 (788)
+..+|..+...|++++|+..|+++++..|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++...|
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 90 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQ 90 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CHHHHHHHHHHHHhhCCC
Q 003891 107 DLESAIACYERCLAVSPN 124 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p~ 124 (788)
++++|+++++++++..|+
T Consensus 91 ~~~~A~~~~~~~~~~~~~ 108 (186)
T 3as5_A 91 KYDLAVPLLIKVAEANPI 108 (186)
T ss_dssp CHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHhcCcH
Confidence 444444444444433333
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.1e-17 Score=162.41 Aligned_cols=167 Identities=16% Similarity=0.186 Sum_probs=147.6
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCChHHHHHHHHHHHhcCCC
Q 003891 136 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN----------------LGVAYGEMLKFDMAIVFYELAFHFNPH 199 (788)
Q Consensus 136 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~~~p~ 199 (788)
+...|..+...|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|+++++.+|+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 86 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN 86 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 4455666677889999999999999999999999999 999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003891 200 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK--MDAAAEMIEKAIAANPTYAEAYNNLGV 277 (788)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~eA~~~l~kal~~~p~~~~~~~~la~ 277 (788)
+..++.++|.++...|++++|+.+|+++++++|+++.+++++|.+|...|+ .+++...+++++...|. ..+++.+|.
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~ 165 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGL 165 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987764 45677788877643332 346788999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCh
Q 003891 278 LYRDAGSISLAIDAYEQCLKIDPDSR 303 (788)
Q Consensus 278 ~~~~~g~~~eA~~~~~~al~l~p~~~ 303 (788)
++..+|++++|+.+|+++++++|+..
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999743
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=8.9e-18 Score=157.86 Aligned_cols=147 Identities=15% Similarity=0.109 Sum_probs=130.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 003891 172 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 251 (788)
Q Consensus 172 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 251 (788)
.||.++...|++++|+..+++++..+|+++..++.+|.+|...|++++|+++|+++++++|+++.++..+|.+|...|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 47888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCCCChhhHHhHHHHhhhccCCC
Q 003891 252 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA-YEQCLKIDPDSRNAGQNRLLAMNYINEGH 320 (788)
Q Consensus 252 ~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~-~~~al~l~p~~~~a~~~~lla~~~l~~g~ 320 (788)
++|+..|+++++++|+++.+++++|.+|..+|++++|.+. ++++++++|+++.++.. .+..+...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l--~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKL--KEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHH--HHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHH--HHHHHHHhCc
Confidence 9999999999999999999999999999999999887765 59999999999887643 3444444443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.3e-16 Score=156.93 Aligned_cols=207 Identities=13% Similarity=0.094 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHH---HHHH
Q 003891 58 APAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI---AKNN 131 (788)
Q Consensus 58 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~ 131 (788)
+..++.+|..++..|++++|+..|+++++..|.+ ..+++.+|.+|...|++++|+..|+++++.+|++.. +++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 4455666666666666666666666666665544 245666666666666666666666666666665542 2333
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 003891 132 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 211 (788)
Q Consensus 132 la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 211 (788)
++.++..++ . .....+..++..+...|++++|+..|+++++..|++..+...+..+.
T Consensus 84 ~g~~~~~~~-------~----------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~ 140 (225)
T 2yhc_A 84 RGLTNMALD-------D----------------SALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLV 140 (225)
T ss_dssp HHHHHHHHH-------C------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHH
T ss_pred HHHHHHhhh-------h----------------hhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHH
Confidence 333333222 1 01112233445555566666777777777766666544332221111
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHH
Q 003891 212 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA---EAYNNLGVLYRDAGSISLA 288 (788)
Q Consensus 212 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~---~~~~~la~~~~~~g~~~eA 288 (788)
...+ ........+|.+|...|++++|+..|+++++..|+++ ++++.+|.+|.++|++++|
T Consensus 141 ~~~~-----------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 141 FLKD-----------------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp HHHH-----------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHH-----------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 1000 0112335678888888888888888888888888875 6788888888888888888
Q ss_pred HHHHHHHHhhCCCChh
Q 003891 289 IDAYEQCLKIDPDSRN 304 (788)
Q Consensus 289 ~~~~~~al~l~p~~~~ 304 (788)
++.++++....|++.+
T Consensus 204 ~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 204 EKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHhhCCCchh
Confidence 8888888888877644
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.71 E-value=4.7e-15 Score=176.64 Aligned_cols=266 Identities=12% Similarity=0.063 Sum_probs=149.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHh----------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003891 30 LGTSLKLAGNTQDGIQKYYEALKI----------------------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 87 (788)
Q Consensus 30 lg~~~~~~g~~~~A~~~~~~al~~----------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~ 87 (788)
.|.++...|.+++|..+|+++-.. ..+.+.+|+.+|.++...|++++|+..|.++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 488888899999999998886210 1233444555555555555555555555443
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCH
Q 003891 88 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA 167 (788)
Q Consensus 88 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 167 (788)
+++..|..+|.++.+.|++++|+++|+.+.+..++.. ... .+|..|.+.+++++ ++.|. ...+.
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~-Idt-------~LafaYAKl~rlee-le~fI-----~~~n~ 1195 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY-VET-------ELIFALAKTNRLAE-LEEFI-----NGPNN 1195 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc-ccH-------HHHHHHHhhcCHHH-HHHHH-----hCCCH
Confidence 4444555555555555555555555555554443211 011 12222333334442 22221 11122
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003891 168 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 247 (788)
Q Consensus 168 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 247 (788)
..+..+|..+...|+|++|..+|.++ ..|..++.++.++|++++|+++++++ .+..+|...+.++..
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhh
Confidence 34445666666666666666666553 35555666666666666666666655 334555566666666
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHH
Q 003891 248 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 327 (788)
Q Consensus 248 ~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~ 327 (788)
.|++..|..+... +.. +++.+..++..|...|.+++|+.++++++.+++.+...+..+...... -..++..+.
T Consensus 1263 ~~Ef~LA~~cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaK---y~peklmEh 1335 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK---FKPQKMREH 1335 (1630)
T ss_pred hhHHHHHHHHHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHh---CCHHHHHHH
Confidence 6666666555543 222 355666889999999999999999999999999888877664333322 234555554
Q ss_pred HHHHHHH
Q 003891 328 HRDWGKR 334 (788)
Q Consensus 328 ~~~~~~~ 334 (788)
.+-+..+
T Consensus 1336 lk~f~~r 1342 (1630)
T 1xi4_A 1336 LELFWSR 1342 (1630)
T ss_pred HHHHHHh
Confidence 4444443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.3e-15 Score=156.41 Aligned_cols=206 Identities=7% Similarity=0.053 Sum_probs=142.6
Q ss_pred HcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCC
Q 003891 70 ELMQYD-TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 148 (788)
Q Consensus 70 ~~g~~~-~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~ 148 (788)
..|+++ +|+.++.+++..+|++..+|+..+.++...+.. ..|+ .....
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~------------~~~~-------------------~~~~~ 89 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETE------------KSPE-------------------ESAAL 89 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH------------SCHH-------------------HHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhccc------------ccch-------------------hhhHH
Confidence 344443 677777777777777777777777766554431 0000 00123
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHH
Q 003891 149 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK--FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN-LDKAVECYQ 225 (788)
Q Consensus 149 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~eA~~~~~ 225 (788)
+++++.++++++..+|++..+|...+.++...++ +++++.++.++++.+|.+..+|...+.++...|. ++++++++.
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 5566666777777777777777777777666663 6677777777777777777777777777777776 467777777
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------
Q 003891 226 MALSIKPNFSQSLNNLGVVYTVQ--------------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA--------- 282 (788)
Q Consensus 226 ~al~~~p~~~~~~~~la~~~~~~--------------g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~--------- 282 (788)
++++.+|.+..+|..++.++... +.++++++++++++..+|++..+|+.+..++...
T Consensus 170 ~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~ 249 (331)
T 3dss_A 170 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVE 249 (331)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchH
Confidence 77777777777777777776665 4578888888888888888888887665555544
Q ss_pred --CCHHHHHHHHHHHHhhCCCChhhH
Q 003891 283 --GSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 283 --g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
+.++++++++++++++.|++.-..
T Consensus 250 ~~~~l~~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 250 KSTVLQSELESCKELQELEPENKWCL 275 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCcccchHH
Confidence 468999999999999999985443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-15 Score=152.82 Aligned_cols=187 Identities=12% Similarity=0.049 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHH
Q 003891 25 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE---AYCNM 98 (788)
Q Consensus 25 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~---~~~~l 98 (788)
..++.+|..++..|++++|+..|+++++..|.+ ..+++.+|.++...|++++|+..|+++++.+|++.. +++.+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 457888999999999999999999999999876 479999999999999999999999999999998754 88999
Q ss_pred HHHHHH------------------CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHH
Q 003891 99 GVIYKN------------------RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL 160 (788)
Q Consensus 99 a~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al 160 (788)
|.++.. .|++++|+..|+++++..|++..+.... ..++.+. .
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~----~~l~~~~-------~--------- 144 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDAT----KRLVFLK-------D--------- 144 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHH----HHHHHHH-------H---------
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHH----HHHHHHH-------H---------
Confidence 999886 6799999999999999999987543221 1111110 0
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 003891 161 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA---EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 235 (788)
Q Consensus 161 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 235 (788)
........+|.+|...|++++|+..|+++++..|+++ .++..+|.++.++|++++|++.++++....|++.
T Consensus 145 ----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 145 ----RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp ----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred ----HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 0112345778899999999999999999999988875 6789999999999999999999998888877653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-16 Score=166.30 Aligned_cols=204 Identities=21% Similarity=0.174 Sum_probs=125.3
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 003891 37 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE-LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACY 115 (788)
Q Consensus 37 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 115 (788)
.|++++|.++++++.+..+.. ++. .+++++|..+|.++ |.+|...|++++|+.+|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Confidence 477888999998888776642 111 57888888888876 56788889999999999
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHH
Q 003891 116 ERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVF 189 (788)
Q Consensus 116 ~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~ 189 (788)
++++++.+.... ....+.++..+|.++...|++++|+.+|++++++.+.. ..++.++|.+|.. |++++|+.+
T Consensus 60 ~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 60 LQEAEAHANNRS-LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 998887554321 22345566677777777777777777777777653221 2345556666655 666666666
Q ss_pred HHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHH
Q 003891 190 YELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEM 257 (788)
Q Consensus 190 ~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~ 257 (788)
|++++++.+.. ..++.++|.++..+|++++|+.+|++++++.+.+ ...+..+|.++..+|++++|+.+
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666554321 3445555555555555555555555555543322 12444455555555555555555
Q ss_pred HHHHHHhCCC
Q 003891 258 IEKAIAANPT 267 (788)
Q Consensus 258 l~kal~~~p~ 267 (788)
|++++ ++|.
T Consensus 218 ~~~al-~~p~ 226 (307)
T 2ifu_A 218 VRESY-SIPG 226 (307)
T ss_dssp HHHHT-TSTT
T ss_pred HHHHh-CCCC
Confidence 55555 5443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=8.9e-15 Score=154.57 Aligned_cols=190 Identities=11% Similarity=0.039 Sum_probs=157.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM-QYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~ 105 (788)
+..........+..++|++++.+++..+|++..+|+..+.++...+ .+++++.++++++..+|++..+|...+.++...
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRI 136 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 4444445555667789999999999999999999999999999999 599999999999999999999999999999998
Q ss_pred -C-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhh-hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 003891 106 -G-DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK-LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 182 (788)
Q Consensus 106 -g-~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 182 (788)
+ ++++++++++++++.+|++..+|.....++..++..-. ....+.+++++++++++.+|.+..+|...+.++...++
T Consensus 137 ~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp CCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 7 89999999999999999999999999888888763210 00113478888888888888888888888888887776
Q ss_pred -------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 003891 183 -------FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 216 (788)
Q Consensus 183 -------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 216 (788)
++++++++++++..+|++..+|+.+..++...|+
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred cccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 5777777777777777777777777777666554
|
| >3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-16 Score=173.16 Aligned_cols=338 Identities=11% Similarity=0.067 Sum_probs=211.4
Q ss_pred eEeeccCCccc-ChhHHhhhhhhcccCCCceEEEEEeccccCCh-----h--hHHHHHHHhhhCCeEEEccCCCHHHHHH
Q 003891 356 VIGYVSPDYFT-HSVSYFIEAPLVYHDYQNYKVVVYSAVVKADA-----K--TIRFREKVMKKGGIWRDIYGIDEKKVAA 427 (788)
Q Consensus 356 riGyvS~df~~-H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~-----~--t~~~r~~~~~~~~~~~~~~~~~~~~~a~ 427 (788)
||.++++.+.. --+..+...+...+.+. .+|.+++....... . ........ . +.....+....+.+
T Consensus 2 kI~~v~~~~p~~gG~~~~~~~l~~~L~~~-~~V~v~~~~~~g~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~l~~ 75 (413)
T 3oy2_A 2 KLIIVGAHSSVPSGYGRVMRAIVPRISKA-HEVIVFGIHAFGRSVHANIEEFDAQTAEHV----R-GLNEQGFYYSGLSE 75 (413)
T ss_dssp EEEEEEECTTCCSHHHHHHHHHHHHHTTT-SEEEEEEESCCSCCSCSSSEEEEHHHHHHH----T-TCCSTTCCHHHHHH
T ss_pred eEEEecCCCCCCCCHHHHHHHHHHHHHhc-CCeEEEeecCCCcccccccccCCccccccc----c-ccccccchHHHHHH
Confidence 57777654421 12345555566666655 77877764332100 0 11111111 1 11112445567899
Q ss_pred HHHhCCCcEEEeCCCCCC-CCcccccccCCCCeE-EecccCCCCC-------CCCC--ccEEEecCCCCCcCccCCC-cc
Q 003891 428 MVREDKIDILVELTGHTA-NNKLGMMACQPAPVQ-VTWIGYPNTT-------GLPT--IDYRITDSLADPPETKQKH-VE 495 (788)
Q Consensus 428 ~i~~d~idilvdl~g~t~-~~~~~~~a~r~Apvq-~~~~g~~~tt-------g~~~--~Dy~i~d~~~~p~~~~~~~-~e 495 (788)
.|+..++||++--..... ......+...|-... +.++...... -+.. +|.+|+-.-..-....... .+
T Consensus 76 ~l~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~S~~~~~~~~~~~~~~ 155 (413)
T 3oy2_A 76 FIDVHKPDIVMIYNDPIVIGNYLLAMGKCSHRTKIVLYVDLVSKNIRENLWWIFSHPKVVGVMAMSKCWISDICNYGCKV 155 (413)
T ss_dssp HHHHHCCSEEEEEECHHHHHHHHHHGGGCCSCCEEEEEECCCSBSCCGGGGGGGGCTTEEEEEESSTHHHHHHHHTTCCS
T ss_pred HHHhcCCCEEEEcchHHHHHHHHHHhccCCCCCceeeeccccchhhHHHHHHHHhccCCceEEEcCHHHHHHHHHcCCCC
Confidence 999999999974310000 000000111111111 1111111111 1123 3376654321111111221 46
Q ss_pred ceEEcCCCccccCCCCCCCCCCCCCCCCC--CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCC--HH
Q 003891 496 ELIRLPECFLCYTPSPEAGPVCPTPALTN--GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC--DS 569 (788)
Q Consensus 496 ~l~~lp~~~~~~~~~~~~~~~~~~~~~~~--~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~--~~ 569 (788)
++..+|+.. .+... ...+...++++ +.++|++++++ .|..+.++++|.++.+..|+.+|+++|.+... ..
T Consensus 156 ~~~vi~ngv---d~~~~-~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~ 231 (413)
T 3oy2_A 156 PINIVSHFV---DTKTI-YDARKLVGLSEYNDDVLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFD 231 (413)
T ss_dssp CEEECCCCC---CCCCC-TTHHHHTTCGGGTTSEEEECCSCSSGGGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCC
T ss_pred ceEEeCCCC---CHHHH-HHHHHhcCCCcccCceEEEEcCCCchhcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchhh
Confidence 777777642 11111 11222345555 78899999987 99999999999999999999999999876321 12
Q ss_pred HHHHHHHHHHHcCCCCCc-------EEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccC
Q 003891 570 VRHRFLSTLEQLGLESLR-------VDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHA 641 (788)
Q Consensus 570 ~~~~l~~~~~~~gi~~~r-------v~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~ 641 (788)
....+++.+++.|++ ++ +.|.|.++ .++....|+.+|+++-|+.+ +.|.+++|||++|+|||+
T Consensus 232 l~~~~~~~~~~~~l~-~~v~~l~~vv~~~g~~~-~~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~------- 302 (413)
T 3oy2_A 232 LHSIALRELVASGVD-NVFTHLNKIMINRTVLT-DERVDMMYNACDVIVNCSSGEGFGLCSAEGAVLGKPLII------- 302 (413)
T ss_dssp HHHHHHHHHHHHTCS-CHHHHHTTEEEECSCCC-HHHHHHHHHHCSEEEECCSCCSSCHHHHHHHTTTCCEEE-------
T ss_pred HHHHHHHHHHHcCcc-cccccccceeeccCcCC-HHHHHHHHHhCCEEEeCCCcCCCCcHHHHHHHcCCCEEE-------
Confidence 458888889999998 76 78889887 68899999999999999977 779999999999999998
Q ss_pred ccchh--HHHhh-----------------hCCccccc-CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHH
Q 003891 642 HNVGV--SLLTK-----------------VGLKHLIA-KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNF 701 (788)
Q Consensus 642 ~r~~~--~~l~~-----------------~gl~~~ia-~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~ 701 (788)
+++++ .++.. .|+.+++. .|++++++.. ++..|++.+++++++.++.+.+ .|+++.+
T Consensus 303 s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~~~~~~~~~~~~a~~~~~~--~fs~~~~ 379 (413)
T 3oy2_A 303 SAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFKDEKNRKEYGKRVQDFVKT--KPTWDDI 379 (413)
T ss_dssp ECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTTSHHHHHHHHHHHHHHHTT--SCCHHHH
T ss_pred cCCCChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHH--hCCHHHH
Confidence 44442 11110 02222333 5899999999 9999999999999999988653 4999999
Q ss_pred HHHHHHHHHHHHHH
Q 003891 702 ALGLESTYRNMWHR 715 (788)
Q Consensus 702 ~~~~e~~~~~~~~~ 715 (788)
++++++.|+++.++
T Consensus 380 ~~~~~~~~~~~~~~ 393 (413)
T 3oy2_A 380 SSDIIDFFNSLLRV 393 (413)
T ss_dssp HHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.5e-16 Score=141.39 Aligned_cols=113 Identities=21% Similarity=0.284 Sum_probs=64.7
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 003891 196 FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 275 (788)
Q Consensus 196 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~l 275 (788)
++|+.+..+.++|..+++.|++++|+.+|+++++.+|.++.++.++|.++..+|++++|+..++++++++|+++.+++.+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 45555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHh
Q 003891 276 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 308 (788)
Q Consensus 276 a~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 308 (788)
|.++..+|++++|++.|+++++++|++..+..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~ 120 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDPSNEEAREG 120 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 555555555555555555555555555555444
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.6e-16 Score=140.28 Aligned_cols=122 Identities=16% Similarity=0.189 Sum_probs=116.0
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 003891 158 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 237 (788)
Q Consensus 158 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 237 (788)
++..++|+..+.+.++|..++..|++++|++.|+++++.+|.++.++.++|.++..+|++++|+..|+++++++|++..+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003891 238 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 279 (788)
Q Consensus 238 ~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~ 279 (788)
++++|.++..+|++++|++.|+++++++|++.+++..++.++
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999999999999999999998874
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.6e-16 Score=164.15 Aligned_cols=205 Identities=17% Similarity=0.140 Sum_probs=171.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCC
Q 003891 70 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN-RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGD 148 (788)
Q Consensus 70 ~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~ 148 (788)
..|++++|.++++++.+..+.. ++. .+++++|..+|+++ +.++...|+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a---------------------~~~~~~~g~ 51 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA---------------------AVAFKNAKQ 51 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH---------------------HHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH---------------------HHHHHHcCC
Confidence 3578899999999998876642 122 58899999998876 234445789
Q ss_pred HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCC
Q 003891 149 INQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH------CAEACNNLGVIYKDRDN 216 (788)
Q Consensus 149 ~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~ 216 (788)
+++|+.+|.+++++.+.. ..++.++|.+|..+|++++|+.+|++++++.+. ...++.++|.+|.. |+
T Consensus 52 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~ 130 (307)
T 2ifu_A 52 LEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LD 130 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CC
Confidence 999999999999886532 457889999999999999999999999987432 25688999999999 99
Q ss_pred HHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC
Q 003891 217 LDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNNLGVLYRDAGS 284 (788)
Q Consensus 217 ~~eA~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~------~~~~~~la~~~~~~g~ 284 (788)
+++|+.+|++++++.+.. ..++.++|.+|..+|++++|+.+|++++++.+++ ..++..+|.++..+|+
T Consensus 131 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~ 210 (307)
T 2ifu_A 131 LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD 210 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC
Confidence 999999999999987643 5689999999999999999999999999986543 3478889999999999
Q ss_pred HHHHHHHHHHHHhhCCCChhhHH
Q 003891 285 ISLAIDAYEQCLKIDPDSRNAGQ 307 (788)
Q Consensus 285 ~~eA~~~~~~al~l~p~~~~a~~ 307 (788)
+++|+.+|++++ ++|+......
T Consensus 211 ~~~A~~~~~~al-~~p~~~~~~e 232 (307)
T 2ifu_A 211 YVAAQKCVRESY-SIPGFSGSED 232 (307)
T ss_dssp HHHHHHHHHHHT-TSTTSTTSHH
T ss_pred HHHHHHHHHHHh-CCCCCCCCHH
Confidence 999999999999 9998765543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-14 Score=171.39 Aligned_cols=281 Identities=12% Similarity=0.158 Sum_probs=224.1
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 82 (788)
Q Consensus 3 i~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 82 (788)
+..+++|++..+.- ....+|+.+|.++...|++++|+..|.++ +++..|..+|.++.+.|++++|+++|.
T Consensus 1089 i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~ 1158 (1630)
T 1xi4_A 1089 IGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQ 1158 (1630)
T ss_pred HhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44556665544211 11345888999999999999999999886 789999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh
Q 003891 83 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 162 (788)
Q Consensus 83 kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~ 162 (788)
.+.+..++ +.+...+|.+|.+++++++ ++.|. ..++. . .+..+|..+...|++++|+.+|.++
T Consensus 1159 mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI----~~~n~-a-------d~~~iGd~le~eg~YeeA~~~Y~kA--- 1221 (1630)
T 1xi4_A 1159 MARKKARE-SYVETELIFALAKTNRLAE-LEEFI----NGPNN-A-------HIQQVGDRCYDEKMYDAAKLLYNNV--- 1221 (1630)
T ss_pred HHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH----hCCCH-H-------HHHHHHHHHHhcCCHHHHHHHHHhh---
Confidence 99988744 3344469999999999885 44442 12322 2 2335677777788999999999996
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 003891 163 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 242 (788)
Q Consensus 163 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la 242 (788)
..|..++.++.++|++++|++.++++ .+..+|...+.++...|++..|..+... +..+ ++.+..++
T Consensus 1222 -----~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~---~deLeeli 1287 (1630)
T 1xi4_A 1222 -----SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELI 1287 (1630)
T ss_pred -----hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC---HHHHHHHH
Confidence 47899999999999999999999999 5578999999999999999999998875 4333 55666899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCC-----CChhhHHhHHHHhhh
Q 003891 243 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA--GSISLAIDAYEQCLKIDP-----DSRNAGQNRLLAMNY 315 (788)
Q Consensus 243 ~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~--g~~~eA~~~~~~al~l~p-----~~~~a~~~~lla~~~ 315 (788)
..|...|.+++|+.++++++.+++.+...+..++.+|.+- ++..+++++|...+.+.| ++...|.. +...|
T Consensus 1288 ~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~e--lv~LY 1365 (1630)
T 1xi4_A 1288 NYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAE--LVFLY 1365 (1630)
T ss_pred HHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHH--HHHHH
Confidence 9999999999999999999999999999998899888764 577889999998888776 44444444 45666
Q ss_pred ccCCCchHHHH
Q 003891 316 INEGHDDKLFE 326 (788)
Q Consensus 316 l~~g~~~~~~~ 326 (788)
...++.+++..
T Consensus 1366 ~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1366 DKYEEYDNAII 1376 (1630)
T ss_pred HhcccHHHHHH
Confidence 67777766653
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=8.4e-15 Score=154.75 Aligned_cols=244 Identities=10% Similarity=0.007 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 003891 59 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNMAIALT 137 (788)
Q Consensus 59 ~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 137 (788)
.++..+..+....+..++|++++++++.++|++..+|+..+.++...+ .++++++.+++++..+|++..+|.....++.
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 344444445555566689999999999999999999999999999999 5999999999999999999999999888887
Q ss_pred HhhhhhhhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH--------HHHHHHHHHHhcCCCCHHHHHHHH
Q 003891 138 DLGTKVKLEG-DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD--------MAIVFYELAFHFNPHCAEACNNLG 208 (788)
Q Consensus 138 ~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~la 208 (788)
.+. + +++++++++.++++.+|.+..+|...+.++...+.++ +++++++++++.+|.+..+|+..+
T Consensus 135 ~l~------~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~ 208 (349)
T 3q7a_A 135 RIS------PQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRW 208 (349)
T ss_dssp HHC------CSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred Hhc------CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 761 3 6789999999999999999999999999999988888 999999999999999999999999
Q ss_pred HHHHHcCC-------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHH
Q 003891 209 VIYKDRDN-------LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM--------------------DAAAEMIEKA 261 (788)
Q Consensus 209 ~~~~~~g~-------~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--------------------~eA~~~l~ka 261 (788)
.++...++ ++++++++++++..+|++..+|+.+..++...|+. .+-.+...+.
T Consensus 209 ~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (349)
T 3q7a_A 209 YLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPM 288 (349)
T ss_dssp HHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCC
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHH
Confidence 99999987 79999999999999999999999999999887764 2223333333
Q ss_pred HHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCChhhHHh
Q 003891 262 IAAN------PTYAEAYNNLGVLYRDAGSISLAIDAYEQCL-KIDPDSRNAGQN 308 (788)
Q Consensus 262 l~~~------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al-~l~p~~~~a~~~ 308 (788)
+... +..+.++..|+.+|.+.|+.++|.++++... +.||-....+..
T Consensus 289 ~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~ 342 (349)
T 3q7a_A 289 PSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEF 342 (349)
T ss_dssp CC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHH
Confidence 2222 4668899999999999999999999999987 678865555544
|
| >2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.2e-15 Score=164.53 Aligned_cols=337 Identities=12% Similarity=0.093 Sum_probs=214.4
Q ss_pred CCeeEeeccCCcccChhHHhhhhhhcccCCCceEEEEEeccccCChh--hHHHHHHHhhhCCeEEEccCCCH--------
Q 003891 353 RPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAK--TIRFREKVMKKGGIWRDIYGIDE-------- 422 (788)
Q Consensus 353 ~~lriGyvS~df~~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~--t~~~r~~~~~~~~~~~~~~~~~~-------- 422 (788)
++.||.+++..+..--+...+..+...+.+.+++|.+++.....+.. ...+..... +. . ...+..
T Consensus 39 ~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~---~~-~-~~~~~~~~~~~~~~ 113 (416)
T 2x6q_A 39 KGRSFVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWFVIEGPTEFFNVTKTFHNALQ---GN-E-SLKLTEEMKELYLN 113 (416)
T ss_dssp TTCEEEEEESCSSSSTHHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHHHHHT---TC-C-SCCCCHHHHHHHHH
T ss_pred hccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCcchhhhhcccceeec---cc-c-cccccHHHHHHHHH
Confidence 44788888877643334445555556666667888877654332111 111111111 00 0 111111
Q ss_pred --HHHHHHHHhCCCcEEEeCCCCCCCCcccccccCCCCeEEecccCCCCCC----------CCCccEEEecCCCCCcCcc
Q 003891 423 --KKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG----------LPTIDYRITDSLADPPETK 490 (788)
Q Consensus 423 --~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~Apvq~~~~g~~~ttg----------~~~~Dy~i~d~~~~p~~~~ 490 (788)
..+.+.|+..++||++--+.+.. .+..++.+-.|+-++.-+...... +...|.+|.. ......
T Consensus 114 ~~~~~~~~l~~~~~Dvv~~~~~~~~--~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~i~~---~s~~~~ 188 (416)
T 2x6q_A 114 VNRENSKFIDLSSFDYVLVHDPQPA--ALIEFYEKKSPWLWRCHIDLSSPNREFWEFLRRFVEKYDRYIFH---LPEYVQ 188 (416)
T ss_dssp HHHHHHHSSCGGGSSEEEEESSTTG--GGGGGSCCCSCEEEECCSCCSSCCHHHHHHHHHHHTTSSEEEES---SGGGSC
T ss_pred HHHHHHHHHhhcCCCEEEEeccchh--hHHHHHHhcCCEEEEEccccCCccHHHHHHHHHHHHhCCEEEEe---chHHHH
Confidence 12344566679999975433322 122222233676555444322111 1234554421 112222
Q ss_pred CCCc-cceEEcCCCccccCCCCCCC-CC--------CCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEE
Q 003891 491 QKHV-EELIRLPECFLCYTPSPEAG-PV--------CPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRL 558 (788)
Q Consensus 491 ~~~~-e~l~~lp~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l 558 (788)
..+. +++..+|+.. .+....+ +. +...+++++.+++++++++ .|..+.++++|.++.+..|+.+|
T Consensus 189 ~~~~~~~~~vi~ngv---d~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l 265 (416)
T 2x6q_A 189 PELDRNKAVIMPPSI---DPLSEKNVELKQTEILRILERFDVDPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQL 265 (416)
T ss_dssp TTSCTTTEEECCCCB---CTTSTTTSCCCHHHHHHHHHHTTCCTTSCEEEEECCCCTTSCHHHHHHHHHHHHHHCTTCEE
T ss_pred hhCCccceEEeCCCC---ChhhhcccccChhhHHHHHHHhCCCCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEE
Confidence 3333 6777888642 1111100 00 1123456677788888876 88999999999999999999999
Q ss_pred EEecCCCCC-HHHHHHHHHHHHHcCCCCCcEEEcCCcCC--cHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceee
Q 003891 559 VVKCKPFCC-DSVRHRFLSTLEQLGLESLRVDLLPLILL--NHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVT 634 (788)
Q Consensus 559 ~l~~~~~~~-~~~~~~l~~~~~~~gi~~~rv~~~~~~~~--~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt 634 (788)
+++|.+... +.....+++..++.|+. ++|.|+|.++. .++....|+.+|+++-|+.+ +.|++++|||++|+|||+
T Consensus 266 ~i~G~g~~~~~~~~~~l~~~~~~~~~~-~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~~E~~~~~~lEAma~G~PvI~ 344 (416)
T 2x6q_A 266 LLVGVMAHDDPEGWIYFEKTLRKIGED-YDVKVLTNLIGVHAREVNAFQRASDVILQMSIREGFGLTVTEAMWKGKPVIG 344 (416)
T ss_dssp EEEECCCTTCHHHHHHHHHHHHHHTTC-TTEEEEEGGGTCCHHHHHHHHHHCSEEEECCSSCSSCHHHHHHHHTTCCEEE
T ss_pred EEEecCcccchhHHHHHHHHHHHhCCC-CcEEEecccCCCCHHHHHHHHHhCCEEEECCCcCCCccHHHHHHHcCCCEEE
Confidence 999977322 34467788888899997 89999996542 45788889999999999977 669999999999999998
Q ss_pred cCCCccCccchh-HHHhhhCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 003891 635 MAGSVHAHNVGV-SLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 712 (788)
Q Consensus 635 ~~g~~~~~r~~~-~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 712 (788)
+++++ .-+-.-|-.+++.+|.+++++...++.+|++.+++++++.++.+.+. |+++.+++.+++.|+++
T Consensus 345 -------~~~~g~~e~i~~~~~g~l~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~--fs~~~~~~~~~~~~~~l 414 (416)
T 2x6q_A 345 -------RAVGGIKFQIVDGETGFLVRDANEAVEVVLYLLKHPEVSKEMGAKAKERVRKN--FIITKHMERYLDILNSL 414 (416)
T ss_dssp -------ESCHHHHHHCCBTTTEEEESSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--TBHHHHHHHHHHHHHTC
T ss_pred -------ccCCCChhheecCCCeEEECCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHh
Confidence 44432 11111244566677999999999999999999999999998877543 89999999999999865
|
| >3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-16 Score=172.39 Aligned_cols=337 Identities=13% Similarity=0.091 Sum_probs=214.0
Q ss_pred CeeEeeccCCcccC--hhHHhhhhhhcccCCCceEEEEEeccccCChhhHHHHHHHhhhCCeEEEccCC-------CHHH
Q 003891 354 PLVIGYVSPDYFTH--SVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGI-------DEKK 424 (788)
Q Consensus 354 ~lriGyvS~df~~H--~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~~~~~~~~~~~~~~~~-------~~~~ 424 (788)
+.+|.+++..|..+ .+...+..+...+ .+.+|++++....... ...+.. ...-....+... ....
T Consensus 4 ~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 77 (394)
T 3okp_A 4 SRKTLVVTNDFPPRIGGIQSYLRDFIATQ--DPESIVVFASTQNAEE-AHAYDK---TLDYEVIRWPRSVMLPTPTTAHA 77 (394)
T ss_dssp CCCEEEEESCCTTSCSHHHHHHHHHHTTS--CGGGEEEEEECSSHHH-HHHHHT---TCSSEEEEESSSSCCSCHHHHHH
T ss_pred CceEEEEeCccCCccchHHHHHHHHHHHh--cCCeEEEEECCCCccc-hhhhcc---ccceEEEEccccccccchhhHHH
Confidence 46788888877633 3345555666666 3567777665443211 122221 111223333221 1357
Q ss_pred HHHHHHhCCCcEEEeCCCCCCCCccccccc-CCCC-eEEecccCCCCCC------------CCCccEEEecCCCCCcCcc
Q 003891 425 VAAMVREDKIDILVELTGHTANNKLGMMAC-QPAP-VQVTWIGYPNTTG------------LPTIDYRITDSLADPPETK 490 (788)
Q Consensus 425 ~a~~i~~d~idilvdl~g~t~~~~~~~~a~-r~Ap-vq~~~~g~~~ttg------------~~~~Dy~i~d~~~~p~~~~ 490 (788)
+.+.|+..++||++--..... ..+..++. .-.| +-+++.|+..... +...|.+|+-.-..-....
T Consensus 78 l~~~~~~~~~Dvv~~~~~~~~-~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~ 156 (394)
T 3okp_A 78 MAEIIREREIDNVWFGAAAPL-ALMAGTAKQAGASKVIASTHGHEVGWSMLPGSRQSLRKIGTEVDVLTYISQYTLRRFK 156 (394)
T ss_dssp HHHHHHHTTCSEEEESSCTTG-GGGHHHHHHTTCSEEEEECCSTHHHHTTSHHHHHHHHHHHHHCSEEEESCHHHHHHHH
T ss_pred HHHHHHhcCCCEEEECCcchH-HHHHHHHHhcCCCcEEEEeccchhhhhhcchhhHHHHHHHHhCCEEEEcCHHHHHHHH
Confidence 888899999999973221111 11111111 2233 4444444321110 1235666653211111111
Q ss_pred CC--CccceEEcCCCccc--cCCCCCC--CCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEec
Q 003891 491 QK--HVEELIRLPECFLC--YTPSPEA--GPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKC 562 (788)
Q Consensus 491 ~~--~~e~l~~lp~~~~~--~~~~~~~--~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~ 562 (788)
.. ..+++..+|+..-. |.|.... ...+...+++++.+++++++++ .|..+.++++|.++.+..|+.+|+++|
T Consensus 157 ~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G 236 (394)
T 3okp_A 157 SAFGSHPTFEHLPSGVDVKRFTPATPEDKSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVG 236 (394)
T ss_dssp HHHCSSSEEEECCCCBCTTTSCCCCHHHHHHHHHHTTCCTTCCEEEEESCSCGGGCHHHHHHHHHHHHHHSTTCEEEEEC
T ss_pred HhcCCCCCeEEecCCcCHHHcCCCCchhhHHHHHhcCCCcCceEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEc
Confidence 11 24677888864210 1110000 0001123566777788888886 899999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC--------CCchhHHHHhhhCCceee
Q 003891 563 KPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY--------AGTTTTCESLYMGVPCVT 634 (788)
Q Consensus 563 ~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~--------~g~~t~~eal~~GvPvvt 634 (788)
.+ +....+++.+ .|+. ++|.|.|.++ .++....|+.+|+++-|+.+ +.+++++|||++|+|||+
T Consensus 237 ~g----~~~~~l~~~~--~~~~-~~v~~~g~~~-~~~~~~~~~~ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a~G~PvI~ 308 (394)
T 3okp_A 237 SG----RYESTLRRLA--TDVS-QNVKFLGRLE-YQDMINTLAAADIFAMPARTRGGGLDVEGLGIVYLEAQACGVPVIA 308 (394)
T ss_dssp CC----TTHHHHHHHT--GGGG-GGEEEEESCC-HHHHHHHHHHCSEEEECCCCBGGGTBCCSSCHHHHHHHHTTCCEEE
T ss_pred Cc----hHHHHHHHHH--hccc-CeEEEcCCCC-HHHHHHHHHhCCEEEecCccccccccccccCcHHHHHHHcCCCEEE
Confidence 77 4556666655 6776 8999999987 68999999999999999975 558899999999999998
Q ss_pred cCCCccCccchhHHHhhhCCcccccC--CHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 003891 635 MAGSVHAHNVGVSLLTKVGLKHLIAK--NEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 712 (788)
Q Consensus 635 ~~g~~~~~r~~~~~l~~~gl~~~ia~--~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 712 (788)
.....+..-+ .-| .+++.. |.+++++...++.+|++.+++++++.++...+. |+++.+++.+++.|+++
T Consensus 309 ~~~~~~~e~i------~~~-~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~~~ 379 (394)
T 3okp_A 309 GTSGGAPETV------TPA-TGLVVEGSDVDKLSELLIELLDDPIRRAAMGAAGRAHVEAE--WSWEIMGERLTNILQSE 379 (394)
T ss_dssp CSSTTGGGGC------CTT-TEEECCTTCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--TBHHHHHHHHHHHHHSC
T ss_pred eCCCChHHHH------hcC-CceEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHh
Confidence 5433222211 124 455554 999999999999999999999999998877543 89999999999999875
Q ss_pred HH
Q 003891 713 WH 714 (788)
Q Consensus 713 ~~ 714 (788)
-+
T Consensus 380 ~r 381 (394)
T 3okp_A 380 PR 381 (394)
T ss_dssp CC
T ss_pred cc
Confidence 44
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.65 E-value=9e-16 Score=148.15 Aligned_cols=161 Identities=12% Similarity=0.057 Sum_probs=138.9
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-Hc
Q 003891 136 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK-DR 214 (788)
Q Consensus 136 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~ 214 (788)
+..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...| ++..+..++.+.. ..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhh
Confidence 344566666688999999999999999999999999999999999999999999999999999 7777666665533 33
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 215 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDAGSISLAIDAY 292 (788)
Q Consensus 215 g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~--~~~~~~la~~~~~~g~~~eA~~~~ 292 (788)
++..+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. ..++..++.++..+|+.++|+..|
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 344568999999999999999999999999999999999999999999999875 568999999999999999999999
Q ss_pred HHHHh
Q 003891 293 EQCLK 297 (788)
Q Consensus 293 ~~al~ 297 (788)
++++.
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=147.64 Aligned_cols=168 Identities=11% Similarity=-0.043 Sum_probs=121.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 003891 55 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 134 (788)
Q Consensus 55 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 134 (788)
|...+.++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++..| ++......+.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 444556788888888889999999999998888888888899999999999999999999988888888 6543322221
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHH
Q 003891 135 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC--AEACNNLGVIYK 212 (788)
Q Consensus 135 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~ 212 (788)
+... ..+...+|+..++++++.+|++..+++.+|.++...|++++|+..|+++++.+|+. ..++.++|.++.
T Consensus 82 ~~~~------~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~ 155 (176)
T 2r5s_A 82 LELH------QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILS 155 (176)
T ss_dssp HHHH------HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred HHHH------hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHH
Confidence 1110 11122346777777777777777777777777777777777777777777777654 457777777777
Q ss_pred HcCCHHHHHHHHHHHHh
Q 003891 213 DRDNLDKAVECYQMALS 229 (788)
Q Consensus 213 ~~g~~~eA~~~~~~al~ 229 (788)
..|+.++|+..|++++.
T Consensus 156 ~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 156 ALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHCSSCHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHH
Confidence 77777777777777654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=7.2e-15 Score=153.95 Aligned_cols=170 Identities=11% Similarity=-0.010 Sum_probs=134.2
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 003891 53 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 132 (788)
Q Consensus 53 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 132 (788)
..|.+...++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++..+|+........
T Consensus 112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 34888888999999999999999999999999999999999999999999999999999999999988888654332222
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--HHHHHHHHHH
Q 003891 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC--AEACNNLGVI 210 (788)
Q Consensus 133 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~ 210 (788)
+. .+...++.++|+..++++++.+|++..+++.+|.++...|++++|+..|+++++.+|++ ..++.+++.+
T Consensus 192 ~~-------~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~ 264 (287)
T 3qou_A 192 QI-------ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEI 264 (287)
T ss_dssp HH-------HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHH
T ss_pred HH-------HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHH
Confidence 22 22334466777788888888888888888888888888888888888888888877776 6777777777
Q ss_pred HHHcCCHHHHHHHHHHHHh
Q 003891 211 YKDRDNLDKAVECYQMALS 229 (788)
Q Consensus 211 ~~~~g~~~eA~~~~~~al~ 229 (788)
+...|+.++|...|++++.
T Consensus 265 ~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 265 LAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHCTTCHHHHHHHHHHH
T ss_pred HHHcCCCCcHHHHHHHHHH
Confidence 7777777777777777764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-16 Score=169.79 Aligned_cols=262 Identities=13% Similarity=0.166 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~ 105 (788)
+|..+|..+...|++++|++.|.++ .+...+...+..+...|++++|+.+++.+.+..++ +.+...++.+|.+.
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Kl 107 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKT 107 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHh
Confidence 4677777778888888888888663 35557778888888888888888888877775333 66677788888888
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 003891 106 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 185 (788)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 185 (788)
|++.++.++++. |+. ..+..+|..+...|++++|+.+|.++ ..+..+|.++.++|++++
T Consensus 108 g~l~e~e~f~~~-----pn~--------~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~ 166 (449)
T 1b89_A 108 NRLAELEEFING-----PNN--------AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQA 166 (449)
T ss_dssp -CHHHHTTTTTC-----C------------------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHH
T ss_pred CCHHHHHHHHcC-----CcH--------HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHH
Confidence 888887777642 322 15556666677777888888888866 357788888888888888
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003891 186 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 265 (788)
Q Consensus 186 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~ 265 (788)
|++.++++ .++..|...+.++...|+++.|..+... +.. +++-...+..+|.+.|++++|+.++++++.++
T Consensus 167 AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~---~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le 237 (449)
T 1b89_A 167 AVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLE 237 (449)
T ss_dssp HHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST
T ss_pred HHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHh---CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc
Confidence 88888888 3677888888888888888888776664 223 33445567778888888888888888888888
Q ss_pred CCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCC-----CChhhHHhHHHHhhhccCCCchHHH
Q 003891 266 PTYAEAYNNLGVLYRD--AGSISLAIDAYEQCLKIDP-----DSRNAGQNRLLAMNYINEGHDDKLF 325 (788)
Q Consensus 266 p~~~~~~~~la~~~~~--~g~~~eA~~~~~~al~l~p-----~~~~a~~~~lla~~~l~~g~~~~~~ 325 (788)
+.+..++..+|.+|.+ .++..+.++.|...+.+.| ++...|.. +...|...++.+.+.
T Consensus 238 ~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e--~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 238 RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAE--LVFLYDKYEEYDNAI 302 (449)
T ss_dssp TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHH--HHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--HHHHHHhhchHHHHH
Confidence 8888888888887765 3466677777777777766 55555554 344455555555444
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.8e-15 Score=153.70 Aligned_cols=169 Identities=9% Similarity=0.026 Sum_probs=144.7
Q ss_pred CCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH
Q 003891 122 SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA 201 (788)
Q Consensus 122 ~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 201 (788)
.|++...+ ..+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..+++++..+|+..
T Consensus 113 lp~~~~~~-------~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~ 185 (287)
T 3qou_A 113 LPREEELX-------AQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR 185 (287)
T ss_dssp SCCHHHHH-------HHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH
T ss_pred cCCchhhH-------HHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH
Confidence 36655444 34455555577999999999999999999999999999999999999999999999998888777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 003891 202 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLY 279 (788)
Q Consensus 202 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~--~~~~~~la~~~ 279 (788)
......+..+...++.++|+..|+++++.+|++..+++++|.++...|++++|+..|+++++.+|++ ..++..++.++
T Consensus 186 ~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 186 YQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 7777777778888888889999999999999999999999999999999999999999999999988 88899999999
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 003891 280 RDAGSISLAIDAYEQCLK 297 (788)
Q Consensus 280 ~~~g~~~eA~~~~~~al~ 297 (788)
..+|+.++|...|++++.
T Consensus 266 ~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 266 AALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCcHHHHHHHHHH
Confidence 999999999999988875
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4.1e-16 Score=146.19 Aligned_cols=116 Identities=9% Similarity=0.089 Sum_probs=104.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003891 188 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 267 (788)
Q Consensus 188 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 267 (788)
..++++++++|++..+++.+|.++...|++++|+.+|+++++.+|+++.+|.++|.++..+|++++|+..|+++++++|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 44667778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 003891 268 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 303 (788)
Q Consensus 268 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~ 303 (788)
++.+++++|.+|..+|++++|+.+|++++++.|+..
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999998764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-14 Score=167.60 Aligned_cols=165 Identities=12% Similarity=0.032 Sum_probs=115.3
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 003891 37 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 116 (788)
Q Consensus 37 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 116 (788)
.|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|++..++..+|.+|...|++++|+++|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHH
Q 003891 117 RCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM---LKFDMAIVFYELA 193 (788)
Q Consensus 117 ~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~a 193 (788)
++++++|++...+.++ |.++...|++++|+++|+++++.+|++..++..+|.++... |++++|++.++++
T Consensus 82 ~al~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAAPEHPGIALWL-------GHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHCTTCHHHHHHH-------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 8888888876544444 34444456778888888888877777777777777777777 7777777777777
Q ss_pred HhcCCCCHHHHHHHH
Q 003891 194 FHFNPHCAEACNNLG 208 (788)
Q Consensus 194 l~~~p~~~~~~~~la 208 (788)
++.+|.+...+..++
T Consensus 155 l~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 155 VAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHTCCCSCHHHHTT
T ss_pred HhcCCcccChHHHhC
Confidence 777777666555544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-15 Score=164.72 Aligned_cols=238 Identities=13% Similarity=0.095 Sum_probs=110.0
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 003891 35 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 114 (788)
Q Consensus 35 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 114 (788)
...|+.++|.+++++. +++.+|..+|.++...|++++|++.|.++ .++..+...+..+...|++++|+.+
T Consensus 14 ~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4568899999999998 33569999999999999999999999874 4566899999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003891 115 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 194 (788)
Q Consensus 115 ~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 194 (788)
++.+.+..++ + .+...++.+|.+.|++.++.++++. | +..++..+|..+...|+|++|..+|.++
T Consensus 84 l~~ark~~~~-~-------~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a- 148 (449)
T 1b89_A 84 LQMARKKARE-S-------YVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV- 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT-
T ss_pred HHHHHHhCcc-c-------hhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 9999885433 2 2344455666667799998888853 4 3459999999999999999999999977
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003891 195 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 274 (788)
Q Consensus 195 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~ 274 (788)
..|..+|.++.++|++++|++.++++ .++..|...+.++...|+++.|..+... +..+ ++-...
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~---ad~l~~ 212 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEE 212 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTC---HHHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhC---HhhHHH
Confidence 47899999999999999999999999 4789999999999999999999887775 2244 444567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHh
Q 003891 275 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 313 (788)
Q Consensus 275 la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~ 313 (788)
+..+|.+.|++++|+.++++++.+++.+...+..+....
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~ 251 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY 251 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 899999999999999999999999999988888764443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.60 E-value=3.6e-16 Score=167.76 Aligned_cols=185 Identities=16% Similarity=0.159 Sum_probs=162.2
Q ss_pred CCCHHHHHHHHHH----HHhhCCCcHHHHHHHHHHHHHhhhhh------------hhcCCHHHHHHHHHHHHHhCCCCHH
Q 003891 105 RGDLESAIACYER----CLAVSPNFEIAKNNMAIALTDLGTKV------------KLEGDINQGVAYYKKALYYNWHYAD 168 (788)
Q Consensus 105 ~g~~~~A~~~~~~----al~~~p~~~~~~~~la~~l~~lg~~~------------~~~g~~~~A~~~~~~al~~~p~~~~ 168 (788)
.+.+++|+..+++ ++.+.|+. + +...|... ...+++++|+..++++++..|+...
T Consensus 78 ~~~~e~al~~~~~Ge~~~l~i~p~~--a-------yg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~ 148 (336)
T 1p5q_A 78 PYGLERAIQRMEKGEHSIVYLKPSY--A-------FGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQST 148 (336)
T ss_dssp CHHHHHHHTTCCTTCEEEEEECTTT--T-------TTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHH
T ss_pred chHHHHHHhcCCCCCeEEEEECCcc--c-------cCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHH
Confidence 4467778877777 77777764 1 22233222 1456788899999999998999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---------------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 233 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 233 (788)
++..+|.++...|++++|+..|+++++++|.+ ..++.++|.++..+|++++|+.+|+++++++|+
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999998 699999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhh
Q 003891 234 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA-IDAYEQCLKI 298 (788)
Q Consensus 234 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA-~~~~~~al~l 298 (788)
+..+++++|.+|..+|++++|+..|+++++++|++..++..++.++..+|++++| ...|++++..
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 5577777654
|
| >2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=8.4e-15 Score=161.28 Aligned_cols=331 Identities=13% Similarity=0.091 Sum_probs=212.2
Q ss_pred CCCCeeEeeccCCcccC--hhHHhhhhhhcccCCCceEEEEEeccccCChhh---------HHHHHHHhhhCCeEEEccC
Q 003891 351 PERPLVIGYVSPDYFTH--SVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKT---------IRFREKVMKKGGIWRDIYG 419 (788)
Q Consensus 351 ~~~~lriGyvS~df~~H--~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t---------~~~r~~~~~~~~~~~~~~~ 419 (788)
..++.+|.+++..+... -+...+..+...+...+++|++++......... .++.. . ..+..+ .
T Consensus 17 ~~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~-~ 90 (406)
T 2gek_A 17 RGSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYVVSGGKAVPIPY--N---GSVARL-R 90 (406)
T ss_dssp ----CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCCTTEEECCCCC------------------
T ss_pred CCCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCccccCCcccccCCcEEeccc--c---CCcccc-c
Confidence 35678999999765433 233455556666666688999887764432100 00000 0 000000 1
Q ss_pred CC---HHHHHHHHHhCCCcEEEeCCCCCCCCcccccccC--CCCeEEecccCCCCC------------CCCCccEEEecC
Q 003891 420 ID---EKKVAAMVREDKIDILVELTGHTANNKLGMMACQ--PAPVQVTWIGYPNTT------------GLPTIDYRITDS 482 (788)
Q Consensus 420 ~~---~~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r--~Apvq~~~~g~~~tt------------g~~~~Dy~i~d~ 482 (788)
.. ...+.+.|+..++||++--....... ..++.| -.|+-+...+..... .+...|.+|+-.
T Consensus 91 ~~~~~~~~l~~~l~~~~~Dii~~~~~~~~~~--~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s 168 (406)
T 2gek_A 91 FGPATHRKVKKWIAEGDFDVLHIHEPNAPSL--SMLALQAAEGPIVATFHTSTTKSLTLSVFQGILRPYHEKIIGRIAVS 168 (406)
T ss_dssp CCHHHHHHHHHHHHHHCCSEEEEECCCSSSH--HHHHHHHEESSEEEEECCCCCSHHHHHHHHSTTHHHHTTCSEEEESS
T ss_pred ccHHHHHHHHHHHHhcCCCEEEECCccchHH--HHHHHHhcCCCEEEEEcCcchhhhhHHHHHHHHHHHHhhCCEEEECC
Confidence 11 25677888888999998644443322 222222 356655555532221 124567776542
Q ss_pred CCCCcCccCCC-ccceEEcCCCcc--ccCCCCCCCCCCCCCCCCCCCeEEEecCCC---CcCCHHHHHHHHHHHhHcCCc
Q 003891 483 LADPPETKQKH-VEELIRLPECFL--CYTPSPEAGPVCPTPALTNGFITFGSFNNL---AKITPKVLQVWARILCAVPNS 556 (788)
Q Consensus 483 ~~~p~~~~~~~-~e~l~~lp~~~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~---~K~~~~~~~~~~~il~~~p~~ 556 (788)
-..-......| .+++ .+|+..- .|.+.. ....++.+.+++++++++ .|..+.++++|.++.+..|+.
T Consensus 169 ~~~~~~~~~~~~~~~~-vi~~~v~~~~~~~~~------~~~~~~~~~~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~ 241 (406)
T 2gek_A 169 DLARRWQMEALGSDAV-EIPNGVDVASFADAP------LLDGYPREGRTVLFLGRYDEPRKGMAVLLAALPKLVARFPDV 241 (406)
T ss_dssp HHHHHHHHHHHSSCEE-ECCCCBCHHHHHTCC------CCTTCSCSSCEEEEESCTTSGGGCHHHHHHHHHHHHTTSTTC
T ss_pred HHHHHHHHHhcCCCcE-EecCCCChhhcCCCc------hhhhccCCCeEEEEEeeeCccccCHHHHHHHHHHHHHHCCCe
Confidence 11101111122 3456 7775421 022221 112333355678888877 799999999999999999999
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCC-C-CCchhHHHHhhhCCceee
Q 003891 557 RLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP-Y-AGTTTTCESLYMGVPCVT 634 (788)
Q Consensus 557 ~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~-~-~g~~t~~eal~~GvPvvt 634 (788)
+|+++|.+ +. ..+++.++++ .++|.|.|.++ ..+....|+.+|++|-|+. + +.+++++|||++|+|||+
T Consensus 242 ~l~i~G~~----~~-~~l~~~~~~~---~~~v~~~g~~~-~~~~~~~~~~adv~v~ps~~~e~~~~~~~Ea~a~G~PvI~ 312 (406)
T 2gek_A 242 EILIVGRG----DE-DELREQAGDL---AGHLRFLGQVD-DATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGTAVVA 312 (406)
T ss_dssp EEEEESCS----CH-HHHHHHTGGG---GGGEEECCSCC-HHHHHHHHHHSSEEEECCCSCCSSCHHHHHHHHHTCEEEE
T ss_pred EEEEEcCC----cH-HHHHHHHHhc---cCcEEEEecCC-HHHHHHHHHHCCEEEecCCCCCCCchHHHHHHHcCCCEEE
Confidence 99999987 33 6777776665 48999999987 6788999999999999963 4 668999999999999998
Q ss_pred cCCCccCccchh-HHHhhhCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 003891 635 MAGSVHAHNVGV-SLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 711 (788)
Q Consensus 635 ~~g~~~~~r~~~-~~l~~~gl~~~ia--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 711 (788)
+++++ .-+-.-|..+++. .|.+++++...++.+|++.+.+++++.++... .|+.+.+++.+++.|++
T Consensus 313 -------~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~---~~s~~~~~~~~~~~~~~ 382 (406)
T 2gek_A 313 -------SDLDAFRRVLADGDAGRLVPVDDADGMAAALIGILEDDQLRAGYVARASERVH---RYDWSVVSAQIMRVYET 382 (406)
T ss_dssp -------CCCHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHGG---GGBHHHHHHHHHHHHHH
T ss_pred -------ecCCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHH
Confidence 44432 1122224455665 79999999999999999999999999988765 48999999999999998
Q ss_pred HHHH
Q 003891 712 MWHR 715 (788)
Q Consensus 712 ~~~~ 715 (788)
+..+
T Consensus 383 ~~~~ 386 (406)
T 2gek_A 383 VSGA 386 (406)
T ss_dssp HCCT
T ss_pred HHhh
Confidence 7653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-15 Score=141.30 Aligned_cols=121 Identities=16% Similarity=0.137 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 149 INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMAL 228 (788)
Q Consensus 149 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 228 (788)
+-.+-..++++++++|++..+++.+|.++...|++++|+..|++++..+|+++.+|.++|.++..+|++++|+.+|++++
T Consensus 18 ~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al 97 (151)
T 3gyz_A 18 AINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF 97 (151)
T ss_dssp HHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 33444567778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 003891 229 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 269 (788)
Q Consensus 229 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~ 269 (788)
+++|+++.+++++|.+|..+|++++|+..|++++++.|+.+
T Consensus 98 ~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 98 ALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999865
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-15 Score=153.94 Aligned_cols=217 Identities=11% Similarity=0.002 Sum_probs=174.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHH-------HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCC--
Q 003891 96 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM-------AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY-- 166 (788)
Q Consensus 96 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-- 166 (788)
+..|.-+ ..+++..|.+.|.++++++|+..++|..+ +.++..+. +..+++..+++.+.+.|..
T Consensus 11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~-------r~~~a~~~~~~~l~l~p~~l~ 82 (282)
T 4f3v_A 11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAW-------YSRRNFGQLSGSVQISMSTLN 82 (282)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHH-------HTGGGTTHHHHTTTCCGGGGC
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHH-------HHHHHHHHHHHHhcCChhhhh
Confidence 3344444 57888888888888888888888888877 56666654 5677777888888866543
Q ss_pred -------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 167 -------------------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 227 (788)
Q Consensus 167 -------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 227 (788)
.++...++.++...|++++|.+.|+..+...|++. ..+.+|.++.+.+++++|+.+|+++
T Consensus 83 a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a 161 (282)
T 4f3v_A 83 ARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSA 161 (282)
T ss_dssp CEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTG
T ss_pred hhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 34566689999999999999999999999999888 9999999999999999999999988
Q ss_pred HhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003891 228 LSIKPNF--SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302 (788)
Q Consensus 228 l~~~p~~--~~~~~~la~~~~~~g~~~eA~~~l~kal~~~--p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 302 (788)
.+..+.. ..+++.+|.++..+|++++|+.+|++++... |. ..++++.+|.++.++|+.++|...|++++..+|+
T Consensus 162 ~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~- 240 (282)
T 4f3v_A 162 GKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE- 240 (282)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-
T ss_pred hccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-
Confidence 7653221 3589999999999999999999999998654 55 6789999999999999999999999999999999
Q ss_pred hhhHHhHHHHhhhccCCCchH
Q 003891 303 RNAGQNRLLAMNYINEGHDDK 323 (788)
Q Consensus 303 ~~a~~~~lla~~~l~~g~~~~ 323 (788)
..+... +....|...-+..+
T Consensus 241 ~~~~~a-L~~~~~~~~~t~~~ 260 (282)
T 4f3v_A 241 PKVAAA-LKDPSYRLKTTTAE 260 (282)
T ss_dssp HHHHHH-HHCTTCCCCCCCHH
T ss_pred HHHHHH-HhCCCCCCCCCcHH
Confidence 555443 33444433334443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-13 Score=137.71 Aligned_cols=173 Identities=16% Similarity=0.057 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcC----CHHHH
Q 003891 77 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG----DINQG 152 (788)
Q Consensus 77 A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g----~~~~A 152 (788)
|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++.+. .++.+. ..+|.+|.. + ++++|
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~-------~~lg~~y~~-~g~~~~~~~A 72 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDAL-------ALLAQLKIR-NPQQADYPQA 72 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHH-------HHHHHHTTS-STTSCCHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHH-------HHHHHHHHc-CCCCCCHHHH
Confidence 44444444443 34445555555555555555555555554443 122222 222222222 2 45555
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH----cCCHHHHHH
Q 003891 153 VAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNP--HCAEACNNLGVIYKD----RDNLDKAVE 222 (788)
Q Consensus 153 ~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~g~~~eA~~ 222 (788)
+.+|+++.+ +.++.+++++|.+|.. .+++++|+.+|+++.+..+ .++.+++++|.+|.. .+++++|+.
T Consensus 73 ~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 73 RQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 555555532 3455555666666555 5566666666666665554 235566666666655 555666666
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHh
Q 003891 223 CYQMALSIKPNFSQSLNNLGVVYTVQ-G-----KMDAAAEMIEKAIAA 264 (788)
Q Consensus 223 ~~~~al~~~p~~~~~~~~la~~~~~~-g-----~~~eA~~~l~kal~~ 264 (788)
+|+++++. +.++.+++++|.+|... | ++++|+.+|+++.+.
T Consensus 151 ~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 151 YFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 66666555 44455556666655543 2 566666666666554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-13 Score=125.47 Aligned_cols=134 Identities=40% Similarity=0.645 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003891 168 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 247 (788)
Q Consensus 168 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 247 (788)
.+++.+|.++...|++++|+..++++++..|.+...+..+|.++...|++++|+.+++++++..|.+...+..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 35677888888888888888888888888888888888888888888888889888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 248 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 248 ~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
.|++++|+..++++++..|.+..++..+|.++...|++++|..+++++++.+|+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 999999999999998888888888888999999999999999999998888876
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=136.21 Aligned_cols=120 Identities=10% Similarity=-0.018 Sum_probs=107.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 003891 187 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 266 (788)
Q Consensus 187 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p 266 (788)
-..|++++..+|++...++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++.++|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34578888888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhH
Q 003891 267 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 267 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
+++.+++++|.+|..+|++++|+++|+++++++|+++...
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 9999999999999999999999999999999988876653
|
| >2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.5e-14 Score=151.78 Aligned_cols=300 Identities=11% Similarity=0.048 Sum_probs=185.7
Q ss_pred eeEeeccCC--------c---c---cChhHHhhhhhhcccCCCceEEEEEeccccCChhhHHHHHHHhhhCCeEEEccCC
Q 003891 355 LVIGYVSPD--------Y---F---THSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGI 420 (788)
Q Consensus 355 lriGyvS~d--------f---~---~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~~~~~~~~~~~~~~~~ 420 (788)
.+|.+++.. | . ..-+..++..+...+.+.+++|++++........ +...-+...
T Consensus 4 mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~------------~~~~~~~~~ 71 (342)
T 2iuy_A 4 LKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGR------------PGLTVVPAG 71 (342)
T ss_dssp CEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCS------------TTEEECSCC
T ss_pred cEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCC------------CcceeccCC
Confidence 678888877 2 1 1223445556666666678999998776433211 112222222
Q ss_pred CHHHHHHHHHhCCCcEEEeCCCCCCCCcccccccCCCCeEEecccCCCCCCCCCccEEEecCCCCCcCccCCC--ccceE
Q 003891 421 DEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKH--VEELI 498 (788)
Q Consensus 421 ~~~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~Apvq~~~~g~~~ttg~~~~Dy~i~d~~~~p~~~~~~~--~e~l~ 498 (788)
....+.+.|+..++||++--..+... ......-.| -++.-+..... ...|.+|+-. +.....+ .+++.
T Consensus 72 ~~~~l~~~l~~~~~Dvi~~~~~~~~~---~~~~~~~~p-v~~~h~~~~~~--~~~d~ii~~S----~~~~~~~~~~~~~~ 141 (342)
T 2iuy_A 72 EPEEIERWLRTADVDVVHDHSGGVIG---PAGLPPGTA-FISSHHFTTRP--VNPVGCTYSS----RAQRAHCGGGDDAP 141 (342)
T ss_dssp SHHHHHHHHHHCCCSEEEECSSSSSC---STTCCTTCE-EEEEECSSSBC--SCCTTEEESC----HHHHHHTTCCTTSC
T ss_pred cHHHHHHHHHhcCCCEEEECCchhhH---HHHhhcCCC-EEEecCCCCCc--ccceEEEEcC----HHHHHHHhcCCceE
Confidence 34578899999999999754433221 111122234 23333332211 1244444322 1111111 35666
Q ss_pred EcCCCccc--cCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHH
Q 003891 499 RLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRF 574 (788)
Q Consensus 499 ~lp~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l 574 (788)
.+|+..-. |.|... ..+ +..++++++++ .|..+.+++++.++ +.+|+++|.+ +.+..+
T Consensus 142 vi~ngvd~~~~~~~~~--------~~~-~~~~i~~vG~~~~~Kg~~~li~a~~~~-----~~~l~i~G~g----~~~~~l 203 (342)
T 2iuy_A 142 VIPIPVDPARYRSAAD--------QVA-KEDFLLFMGRVSPHKGALEAAAFAHAC-----GRRLVLAGPA----WEPEYF 203 (342)
T ss_dssp BCCCCBCGGGSCCSTT--------CCC-CCSCEEEESCCCGGGTHHHHHHHHHHH-----TCCEEEESCC----CCHHHH
T ss_pred EEcCCCChhhcCcccc--------cCC-CCCEEEEEeccccccCHHHHHHHHHhc-----CcEEEEEeCc----ccHHHH
Confidence 66654210 111110 111 22346666665 89999999998876 7899999987 355666
Q ss_pred HHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCC----------C-CCchhHHHHhhhCCceeecCCCccCcc
Q 003891 575 LSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP----------Y-AGTTTTCESLYMGVPCVTMAGSVHAHN 643 (788)
Q Consensus 575 ~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~----------~-~g~~t~~eal~~GvPvvt~~g~~~~~r 643 (788)
++..+++| ++|.|.|.++ ..+....|+.+|+++-|+. + +.+++.+|||++|+|||+ ++
T Consensus 204 ~~~~~~~~---~~v~~~g~~~-~~~l~~~~~~adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~-------s~ 272 (342)
T 2iuy_A 204 DEITRRYG---STVEPIGEVG-GERRLDLLASAHAVLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVG-------TG 272 (342)
T ss_dssp HHHHHHHT---TTEEECCCCC-HHHHHHHHHHCSEEEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEE-------CC
T ss_pred HHHHHHhC---CCEEEeccCC-HHHHHHHHHhCCEEEECCcccccccccccccCccHHHHHHHhcCCCEEE-------cC
Confidence 67777777 7999999987 6788899999999999998 4 779999999999999998 44
Q ss_pred chh-HHHhhh--CCcccccC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 003891 644 VGV-SLLTKV--GLKHLIAK-NEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 715 (788)
Q Consensus 644 ~~~-~~l~~~--gl~~~ia~-~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 715 (788)
+++ .-+..- |-.+++.+ |.+++++...++.+ .++.|+.++++ |+.+.+++++++.|+++..+
T Consensus 273 ~~~~~e~~~~~~~~~g~~~~~d~~~l~~~i~~l~~----~~~~~~~~~~~------~s~~~~~~~~~~~~~~~~~~ 338 (342)
T 2iuy_A 273 NGCLAEIVPSVGEVVGYGTDFAPDEARRTLAGLPA----SDEVRRAAVRL------WGHVTIAERYVEQYRRLLAG 338 (342)
T ss_dssp TTTHHHHGGGGEEECCSSSCCCHHHHHHHHHTSCC----HHHHHHHHHHH------HBHHHHHHHHHHHHHHHHTT
T ss_pred CCChHHHhcccCCCceEEcCCCHHHHHHHHHHHHH----HHHHHHHHHHh------cCHHHHHHHHHHHHHHHHcc
Confidence 432 111112 44556666 99999999988887 23333333222 78999999999999988653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-13 Score=136.69 Aligned_cols=185 Identities=15% Similarity=0.096 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC----CHHHHHHHHH
Q 003891 41 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG----DLESAIACYE 116 (788)
Q Consensus 41 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~ 116 (788)
.+|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++.+. .++.+++++|.+|.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3578899999875 78999999999999999999999999999875 579999999999998 7 9999999999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHhhhhhhh----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCChHHH
Q 003891 117 RCLAVSPNFEIAKNNMAIALTDLGTKVKL----EGDINQGVAYYKKALYYNW--HYADAMYNLGVAYGE----MLKFDMA 186 (788)
Q Consensus 117 ~al~~~p~~~~~~~~la~~l~~lg~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~g~~~~A 186 (788)
++.+. .+..+..+ +|.+|.. .+++++|+.+|+++.+..+ .++.+++++|.+|.. .+++++|
T Consensus 78 ~A~~~--g~~~a~~~-------Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 78 KAVEA--GSKSGEIV-------LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHHHT--TCHHHHHH-------HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHHHC--CCHHHHHH-------HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 99764 55555444 4555544 7899999999999999887 358999999999999 8999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 003891 187 IVFYELAFHFNPHCAEACNNLGVIYKDR-D-----NLDKAVECYQMALSIKPNFSQSLNNLG 242 (788)
Q Consensus 187 ~~~~~~al~~~p~~~~~~~~la~~~~~~-g-----~~~eA~~~~~~al~~~p~~~~~~~~la 242 (788)
+.+|+++++. +.+..+++++|.+|... | ++++|+.+|+++.+... ..+...++
T Consensus 149 ~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~--~~A~~~l~ 207 (212)
T 3rjv_A 149 SEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF--DTGCEEFD 207 (212)
T ss_dssp HHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC--HHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHH
Confidence 9999999998 66778999999999874 3 89999999999998743 44444443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.57 E-value=9.6e-15 Score=149.39 Aligned_cols=212 Identities=13% Similarity=0.030 Sum_probs=167.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHH-H-
Q 003891 62 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNM-------GVIYKNRGDLESAIACYERCLAVSPNFEIAKNN-M- 132 (788)
Q Consensus 62 ~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-l- 132 (788)
+..|.-+ ..+++..|.+.|.++++.+|..+++|..+ +.++...++..+++..+++.+.+.|.....++. .
T Consensus 11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g 89 (282)
T 4f3v_A 11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG 89 (282)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence 3334444 46777777777777777777777777777 677777777777777777777776654433333 1
Q ss_pred ------------HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 003891 133 ------------AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 200 (788)
Q Consensus 133 ------------a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 200 (788)
-.+....+..+...|++++|.+.|+..+...|++. ..+.+|.++.+.+++++|+..|+++.+..+..
T Consensus 90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~ 168 (282)
T 4f3v_A 90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF 168 (282)
T ss_dssp TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH
T ss_pred cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc
Confidence 12233344556667899999999999999999888 99999999999999999999999887654221
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 003891 201 --AEACNNLGVIYKDRDNLDKAVECYQMALSIK--PN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 275 (788)
Q Consensus 201 --~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~l 275 (788)
..+++++|.++..+|++++|+.+|++++... |. ..++++++|.++.++|+.++|...|++++..+|+ ..++..|
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 4589999999999999999999999998654 55 5679999999999999999999999999999999 7776655
Q ss_pred H
Q 003891 276 G 276 (788)
Q Consensus 276 a 276 (788)
.
T Consensus 248 ~ 248 (282)
T 4f3v_A 248 K 248 (282)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-14 Score=152.28 Aligned_cols=193 Identities=14% Similarity=0.085 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~ 105 (788)
.++.+|..++..|++++|+..|+++++.+|++..+++++|.+|...|++++|+..++++++.+|++..+++.+|.+|...
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 85 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 47778888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 003891 106 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 185 (788)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 185 (788)
|++++|+..|+++++++|++............. ..++........
T Consensus 86 g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~----------~~~~~~~~~~~~------------------------- 130 (281)
T 2c2l_A 86 ESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR----------IAKKKRWNSIEE------------------------- 130 (281)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH----------HHHHHHHHHHHH-------------------------
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH----------HHHHHHHHHHHH-------------------------
Confidence 999999999999998877543111111111101 111111111111
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 003891 186 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ-GKMDAAAEMIEKAIAA 264 (788)
Q Consensus 186 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~eA~~~l~kal~~ 264 (788)
...+.+..+...++.++ .|++++|++.++++++.+|++......++.++... +.+++|.+.|+++.+.
T Consensus 131 ---------~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 131 ---------RRIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp ---------TCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred ---------HHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 23333344444444433 46666666666666666666666555665555554 5566777777766553
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.55 E-value=7.1e-16 Score=165.51 Aligned_cols=199 Identities=16% Similarity=0.163 Sum_probs=150.8
Q ss_pred CChHHHHHHHHH----HHHhCCCCHHHHHHHHHHHH------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003891 38 GNTQDGIQKYYE----ALKIDPHYAPAYYNLGVVYS------------ELMQYDTALGCYEKAALERPMYAEAYCNMGVI 101 (788)
Q Consensus 38 g~~~~A~~~~~~----al~~~p~~~~~~~~lg~~~~------------~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~ 101 (788)
+.+++|+..+++ ++.+.|.. +|..+|.... .++++++|+..++++++.+|..+.++..+|.+
T Consensus 79 ~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~ 156 (336)
T 1p5q_A 79 YGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTV 156 (336)
T ss_dssp HHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHH
Confidence 467788888888 77788876 5555554432 56778889999999999999999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003891 102 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 181 (788)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 181 (788)
+...|++++|+..|++++++.|++... ..+ ...+..+....++.++|.++..+|
T Consensus 157 ~~~~g~~~~A~~~y~~Al~~~p~~~~~-------------------~~~-------~~~~~~~~~~~~~~nla~~~~~~g 210 (336)
T 1p5q_A 157 YFKEGKYKQALLQYKKIVSWLEYESSF-------------------SNE-------EAQKAQALRLASHLNLAMCHLKLQ 210 (336)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTTTCCCC-------------------CSH-------HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHHhhccccC-------------------ChH-------HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999986310 001 111222233456777777788888
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHH
Q 003891 182 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA-AEMIEK 260 (788)
Q Consensus 182 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA-~~~l~k 260 (788)
++++|+..|+++++++|++..+++++|.+|..+|++++|+.+|+++++++|++..++..++.++..+|++++| ...|++
T Consensus 211 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~ 290 (336)
T 1p5q_A 211 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYAN 290 (336)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888877788888888888888888888888888888888877888888888888887777 456666
Q ss_pred HHHh
Q 003891 261 AIAA 264 (788)
Q Consensus 261 al~~ 264 (788)
++..
T Consensus 291 ~~~~ 294 (336)
T 1p5q_A 291 MFER 294 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
| >3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=4.4e-14 Score=157.30 Aligned_cols=184 Identities=15% Similarity=0.107 Sum_probs=147.7
Q ss_pred CCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcC--CcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCC
Q 003891 521 ALTNGFITFGSFNNL--AKITPKVLQVWARILCAVP--NSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILL 596 (788)
Q Consensus 521 ~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p--~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~ 596 (788)
+++++.+++++++++ .|..+.++++|.++.+..| +.+|+++|.+....+..+.+++.++++|+. ++|.|.|.++
T Consensus 238 ~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~-~~v~~~g~~~- 315 (438)
T 3c48_A 238 GIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVE-KRIRFLDPRP- 315 (438)
T ss_dssp TCCSSSEEEEEESCBSGGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC------CHHHHHHHHTTCT-TTEEEECCCC-
T ss_pred CCCCCCcEEEEEeeecccCCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCCcHHHHHHHHHHHcCCC-CcEEEcCCCC-
Confidence 455677888888876 7999999999999999988 799999987221125677888999999998 8999999987
Q ss_pred cHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc--CCHHHHHHHHHHHh
Q 003891 597 NHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLA 673 (788)
Q Consensus 597 ~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~y~~~a~~l~ 673 (788)
.++....|+.+|+++-|+.+ +.+++++|||++|+|||+.....+.. ++ .-|..+++. .|.+++++...++.
T Consensus 316 ~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e-----~i-~~~~~g~~~~~~d~~~la~~i~~l~ 389 (438)
T 3c48_A 316 PSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPI-----AV-AEGETGLLVDGHSPHAWADALATLL 389 (438)
T ss_dssp HHHHHHHHHHCSEEEECCSCCSSCHHHHHHHHTTCCEEEESCTTHHH-----HS-CBTTTEEEESSCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCEEEECccccCCchHHHHHHHcCCCEEecCCCChhH-----Hh-hCCCcEEECCCCCHHHHHHHHHHHH
Confidence 68899999999999999977 66999999999999999844221111 11 113344454 38999999999999
Q ss_pred cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 003891 674 SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 715 (788)
Q Consensus 674 ~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 715 (788)
+|++.+.+++++.++...+ |+++.+++.+++.|+++..+
T Consensus 390 ~~~~~~~~~~~~~~~~~~~---~s~~~~~~~~~~~~~~~~~~ 428 (438)
T 3c48_A 390 DDDETRIRMGEDAVEHART---FSWAATAAQLSSLYNDAIAN 428 (438)
T ss_dssp HCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999888653 89999999999999999875
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-14 Score=136.13 Aligned_cols=121 Identities=11% Similarity=0.026 Sum_probs=114.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 003891 152 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 231 (788)
Q Consensus 152 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 231 (788)
+-..|++++..+|++...++.+|.++...|++++|+..|++++..+|.+..+++++|.++...|++++|+.+|+++++++
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34568889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003891 232 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 272 (788)
Q Consensus 232 p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~ 272 (788)
|+++.+++++|.+|...|++++|+..|++++++.|+++...
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 99999999999999999999999999999999998876543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-14 Score=149.07 Aligned_cols=197 Identities=14% Similarity=0.060 Sum_probs=115.4
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003891 91 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAM 170 (788)
Q Consensus 91 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 170 (788)
++..+..+|..+...|++++|+..|+++++.+|++...+.+++. ++...|++++|+..++++++++|++..++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-------~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 75 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRAL-------CYLKMQQPEQALADCRRALELDGQSVKAH 75 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHH-------HHHHhcCHHHHHHHHHHHHHhCCCCHHHH
Confidence 34444455555555555555555555555555544333322222 22223355555555555555555555566
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 003891 171 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 250 (788)
Q Consensus 171 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 250 (788)
+.+|.++...|++++|+..|+++++++|++...+........ +..++...........+.+..+...++.++ .|+
T Consensus 76 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~ 150 (281)
T 2c2l_A 76 FFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAE 150 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHH
Confidence 666666666666666666666666665543211111111111 112223333344455677777777777654 689
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhC
Q 003891 251 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA-GSISLAIDAYEQCLKID 299 (788)
Q Consensus 251 ~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~l~ 299 (788)
+++|++.++++++.+|++......++.++.+. +.+++|.+.|+++.+..
T Consensus 151 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 151 RERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999888888888877776 77889999999887643
|
| >2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.4e-14 Score=155.90 Aligned_cols=276 Identities=16% Similarity=0.138 Sum_probs=180.7
Q ss_pred HHHHHHHHhCCCcEEEeCCCCCCCCcccccccC----CCCeEEecccCCC-CCC------------CCCccEEEecCCCC
Q 003891 423 KKVAAMVREDKIDILVELTGHTANNKLGMMACQ----PAPVQVTWIGYPN-TTG------------LPTIDYRITDSLAD 485 (788)
Q Consensus 423 ~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r----~Apvq~~~~g~~~-ttg------------~~~~Dy~i~d~~~~ 485 (788)
..+.+.|+..++||++--.++.. .....++.+ -.|+-++..|... ..+ +...|.+|+-.-..
T Consensus 89 ~~l~~~l~~~~~Dvv~~~~~~~~-~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~ 167 (394)
T 2jjm_A 89 SKMAEVAQRENLDILHVHYAIPH-AICAYLAKQMIGERIKIVTTLHGTDITVLGSDPSLNNLIRFGIEQSDVVTAVSHSL 167 (394)
T ss_dssp HHHHHHHHHHTCSEEEECSSTTH-HHHHHHHHHHTTTCSEEEEECCHHHHHTTTTCTTTHHHHHHHHHHSSEEEESCHHH
T ss_pred HHHHHHHHHcCCCEEEEcchhHH-HHHHHHHHHhhcCCCCEEEEEecCcccccCCCHHHHHHHHHHHhhCCEEEECCHHH
Confidence 35677888899999975333221 112222222 3676555554211 011 12256666532111
Q ss_pred CcCccCCC--ccceEEcCCCccccCCCCCCCCC----CCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcE
Q 003891 486 PPETKQKH--VEELIRLPECFLCYTPSPEAGPV----CPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSR 557 (788)
Q Consensus 486 p~~~~~~~--~e~l~~lp~~~~~~~~~~~~~~~----~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~ 557 (788)
-......+ .+++..+|++. .+....+.. +...+++++.+++++++++ .|..+.++++|.++.+. ++.+
T Consensus 168 ~~~~~~~~~~~~~~~vi~ngv---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~-~~~~ 243 (394)
T 2jjm_A 168 INETHELVKPNKDIQTVYNFI---DERVYFKRDMTQLKKEYGISESEKILIHISNFRKVKRVQDVVQAFAKIVTE-VDAK 243 (394)
T ss_dssp HHHHHHHTCCSSCEEECCCCC---CTTTCCCCCCHHHHHHTTCC---CEEEEECCCCGGGTHHHHHHHHHHHHHS-SCCE
T ss_pred HHHHHHhhCCcccEEEecCCc---cHHhcCCcchHHHHHHcCCCCCCeEEEEeeccccccCHHHHHHHHHHHHhh-CCCE
Confidence 00111112 36788888642 111111110 1123454666788888876 79999999999999877 6789
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecC
Q 003891 558 LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMA 636 (788)
Q Consensus 558 l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~ 636 (788)
|+++|.+ +....+++.++++|+. ++|.|.|. .++....|+.+|+++-|+.+ +.+++++|||++|+|||+..
T Consensus 244 l~i~G~g----~~~~~l~~~~~~~~l~-~~v~~~g~---~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~PvI~~~ 315 (394)
T 2jjm_A 244 LLLVGDG----PEFCTILQLVKNLHIE-DRVLFLGK---QDNVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTR 315 (394)
T ss_dssp EEEECCC----TTHHHHHHHHHTTTCG-GGBCCCBS---CSCTHHHHHTCSEEEECCSCCSCCHHHHHHHHTTCCEEEEC
T ss_pred EEEECCc----hHHHHHHHHHHHcCCC-CeEEEeCc---hhhHHHHHHhCCEEEeccccCCCchHHHHHHhcCCCEEEec
Confidence 9999976 4567888899999997 89999996 35677888889999999977 66999999999999999854
Q ss_pred CCccCccchhHHHhhhCCcccccC--CHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 003891 637 GSVHAHNVGVSLLTKVGLKHLIAK--NEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 714 (788)
Q Consensus 637 g~~~~~r~~~~~l~~~gl~~~ia~--~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 714 (788)
...+..-+. -|-.+++.. |.+++++...++.+|++.+.+++++.++...+. |+.+.+++.+++.|+++..
T Consensus 316 ~~~~~e~v~------~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~~~~~ 387 (394)
T 2jjm_A 316 VGGIPEVIQ------HGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERARESVYEQ--FRSEKIVSQYETIYYDVLR 387 (394)
T ss_dssp CTTSTTTCC------BTTTEEEECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHTC-
T ss_pred CCChHHHhh------cCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHh
Confidence 332222111 123344443 899999999999999999999999998876433 8999999999999999887
Q ss_pred HHhcC
Q 003891 715 RYCKG 719 (788)
Q Consensus 715 ~~~~~ 719 (788)
+...|
T Consensus 388 ~~~~~ 392 (394)
T 2jjm_A 388 DDKNG 392 (394)
T ss_dssp -----
T ss_pred hhhcc
Confidence 76554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.53 E-value=5.2e-14 Score=130.49 Aligned_cols=120 Identities=10% Similarity=0.007 Sum_probs=100.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003891 188 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 267 (788)
Q Consensus 188 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 267 (788)
..|++++..+|++...++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45677777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHH
Q 003891 268 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 307 (788)
Q Consensus 268 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~ 307 (788)
++.+++.+|.+|..+|++++|+++|+++++++|+++....
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 8888888888888888888888888888888887766543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.52 E-value=4.5e-13 Score=121.10 Aligned_cols=133 Identities=38% Similarity=0.601 Sum_probs=126.5
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 003891 135 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 214 (788)
Q Consensus 135 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 214 (788)
++..+|..+...|++++|+..++++++..|.+...+..+|.++...|++++|+..+++++...|.+...+..+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 45566777777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 003891 215 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 267 (788)
Q Consensus 215 g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 267 (788)
|++++|+.+++++++..|.+..++..+|.++...|++++|+.++++++..+|+
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999999999886
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.52 E-value=5.6e-14 Score=130.25 Aligned_cols=120 Identities=18% Similarity=0.129 Sum_probs=108.2
Q ss_pred HHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 4 ASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 83 (788)
Q Consensus 4 ~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~k 83 (788)
..|+++++.+|++... ++.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++
T Consensus 5 ~~l~~al~~~p~~~~~-------~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 77 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQ-------LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSY 77 (142)
T ss_dssp ----CCTTCCHHHHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHcCCHHHHHH-------HHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4677888888887666 777888889999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHH
Q 003891 84 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 130 (788)
Q Consensus 84 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 130 (788)
+++.+|+++.+++.+|.++...|++++|+..|+++++++|+++....
T Consensus 78 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 78 GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 99999999999999999999999999999999999999988764433
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.51 E-value=5.6e-13 Score=132.11 Aligned_cols=133 Identities=17% Similarity=0.300 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 248 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 248 (788)
.++.+|..+...|++++|+..|++++ +| ++.+++++|.++...|++++|+.+|+++++.+|++..++.++|.++...
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 46678888889999999999998885 33 6789999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 003891 249 GKMDAAAEMIEKAIAANPTYA----------------EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304 (788)
Q Consensus 249 g~~~eA~~~l~kal~~~p~~~----------------~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 304 (788)
|++++|++.|+++++..|++. .+++++|.++..+|++++|+++|+++++++|++..
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 999999999999999877765 89999999999999999999999999999998644
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.4e-13 Score=138.93 Aligned_cols=176 Identities=11% Similarity=0.008 Sum_probs=95.8
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCC----
Q 003891 91 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY---- 166 (788)
Q Consensus 91 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---- 166 (788)
....+...+..+...|++++|++.++++++..+...... .....+..+|.++...|++++|+.+++++++..+..
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 152 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ-QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHH-HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence 344566677788888888888888888888777654322 223334445555555666666666666666543322
Q ss_pred --HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHH
Q 003891 167 --ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS----QSLNN 240 (788)
Q Consensus 167 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~ 240 (788)
..++..+|.+|...|++++|+.+|+++++.. +..+++. .++++
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~-------------------------------~~~~~~~~~~~~~~~n 201 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQL-------------------------------EALHDNEEFDVKVRYN 201 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------------------------------HhcCccccchHHHHHh
Confidence 2344455555555555555555555554210 2222221 34455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhh
Q 003891 241 LGVVYTVQGKMDAAAEMIEKAIAANPT------YAEAYNNLGVLYRDAGSISLA-IDAYEQCLKI 298 (788)
Q Consensus 241 la~~~~~~g~~~eA~~~l~kal~~~p~------~~~~~~~la~~~~~~g~~~eA-~~~~~~al~l 298 (788)
+|.+|..+|++++|+.++++++++.++ ...+++++|.+|..+|++++| ..+|++++.+
T Consensus 202 lg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 202 HAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 555555555555555555555544221 144555566666666666666 5555555554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=158.48 Aligned_cols=195 Identities=10% Similarity=0.053 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhh---hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--C
Q 003891 108 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK---VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML--K 182 (788)
Q Consensus 108 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~---~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~ 182 (788)
.++|++.+++++.++|++..+|...+.++..++.- ......++++++.++++++.+|++..+|...+.++...+ +
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 35667788888888888777777777777665510 000112899999999999999999999999999999999 6
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-------------
Q 003891 183 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD-NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ------------- 248 (788)
Q Consensus 183 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~------------- 248 (788)
++++++.++++++.+|.+..+|...+.++...| .+++++++++++++.+|.+..+|..++.++...
T Consensus 125 ~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~ 204 (567)
T 1dce_A 125 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLP 204 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSC
T ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccccc
Confidence 799999999999999999999999999999999 999999999999999999999999999999885
Q ss_pred -CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH------------HHHHHHHHHhhCCCC
Q 003891 249 -GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL------------AIDAYEQCLKIDPDS 302 (788)
Q Consensus 249 -g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~e------------A~~~~~~al~l~p~~ 302 (788)
+.+++|++++++++.++|++..+|+.++.++...+++++ |+.+|.++++++|..
T Consensus 205 ~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 205 ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred HHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence 568999999999999999999999999999999988766 566678888887764
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-12 Score=123.79 Aligned_cols=132 Identities=18% Similarity=0.185 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 003891 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 246 (788)
Q Consensus 167 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 246 (788)
...+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+++++++.+|.+..++..+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34566777777777778888888877777777777778888888888888888888888888888887888888888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHhh
Q 003891 247 VQGKMDAAAEMIEKAIAANPTYAEAYNNL--GVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 247 ~~g~~~eA~~~l~kal~~~p~~~~~~~~l--a~~~~~~g~~~eA~~~~~~al~l 298 (788)
..|++++|+.+++++++.+|++..++..+ +..+...|++++|++.++++..+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 88888888888888888888777776444 44477778888888877776544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.8e-13 Score=120.30 Aligned_cols=110 Identities=15% Similarity=0.088 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 248 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 248 (788)
.+..+|..+...|++++|+..|+++++.+|++..++.++|.++...|++++|+..|+++++++|++..++..+|.++..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CCHHHHHHHHHHHHHhC------CCCHHHHHHHHHH
Q 003891 249 GKMDAAAEMIEKAIAAN------PTYAEAYNNLGVL 278 (788)
Q Consensus 249 g~~~eA~~~l~kal~~~------p~~~~~~~~la~~ 278 (788)
|++++|+..|+++++++ |++..++..++.+
T Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 86 KEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 44444444444444444 4444444444443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.48 E-value=6.1e-13 Score=131.87 Aligned_cols=152 Identities=17% Similarity=0.205 Sum_probs=133.6
Q ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 003891 134 IALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 213 (788)
Q Consensus 134 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 213 (788)
..++.+|..+...|++++|+..|++++ + .++.++..+|.++...|++++|+..|+++++.+|++..+++++|.++..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--D-PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 345677788888999999999999996 3 3788999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003891 214 RDNLDKAVECYQMALSIKPNFS----------------QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 277 (788)
Q Consensus 214 ~g~~~eA~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~ 277 (788)
.|++++|+.+|+++++..|.+. .++.++|.++...|++++|+..++++++++|++.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-------- 155 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR-------- 155 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG--------
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc--------
Confidence 9999999999999999888766 8999999999999999999999999999999863
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCC
Q 003891 278 LYRDAGSISLAIDAYEQCLKIDP 300 (788)
Q Consensus 278 ~~~~~g~~~eA~~~~~~al~l~p 300 (788)
.+..++|+..+++.....|
T Consensus 156 ----~~~~~~a~~~~~~~~~~~~ 174 (213)
T 1hh8_A 156 ----HSKIDKAMECVWKQKLYEP 174 (213)
T ss_dssp ----GGHHHHHHHHHHTTCCCCC
T ss_pred ----cchHHHHHHHHHhcccccc
Confidence 2445666666665544433
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-12 Score=136.08 Aligned_cols=165 Identities=5% Similarity=-0.058 Sum_probs=128.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----
Q 003891 166 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA------EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----- 234 (788)
Q Consensus 166 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~----- 234 (788)
....+...+..+...|++++|++.++++++..+... ..++.+|.++...|++++|+.+++++++..+..
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 344555667777888888888888888887766543 345678888899999999999999999775433
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---
Q 003891 235 -SQSLNNLGVVYTVQGKMDAAAEMIEKAI---AANPTYA----EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR--- 303 (788)
Q Consensus 235 -~~~~~~la~~~~~~g~~~eA~~~l~kal---~~~p~~~----~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~--- 303 (788)
..++.++|.+|..+|++++|+.+|++++ +..+++. .+++++|.+|..+|++++|+.++++++++.++..
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 5688999999999999999999999999 4456543 6899999999999999999999999998864321
Q ss_pred -hhHHhHHHHhhhccCCCchHH-HHHHHH
Q 003891 304 -NAGQNRLLAMNYINEGHDDKL-FEAHRD 330 (788)
Q Consensus 304 -~a~~~~lla~~~l~~g~~~~~-~~~~~~ 330 (788)
.+.....++..|...|+.+++ ....++
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 133445578888999999888 443433
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.48 E-value=3.4e-11 Score=139.62 Aligned_cols=112 Identities=6% Similarity=-0.027 Sum_probs=84.7
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHH
Q 003891 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ---YDTALG 79 (788)
Q Consensus 3 i~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---~~~A~~ 79 (788)
+..|++.|..+|.+...|..+ .......++++.+...|++++...|.....|......-...++ ++.+..
T Consensus 52 i~~lE~~l~~np~d~~~W~~y-------i~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 52 IGKLNDMIEEQPTDIFLYVKL-------LKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp HHHHHHHHHHCTTCHHHHHHH-------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred HHHHHHHHHHCcCCHHHHHHH-------HHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 567899999999999985544 4445567899999999999999999999999999888888888 999999
Q ss_pred HHHHHHHhCC--CCHHHHHHHHHHHHHCCCH--------HHHHHHHHHHHhh
Q 003891 80 CYEKAALERP--MYAEAYCNMGVIYKNRGDL--------ESAIACYERCLAV 121 (788)
Q Consensus 80 ~~~kal~~~p--~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~~ 121 (788)
.|++++...| .+...|..........++. +...+.|++|+..
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~ 176 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK 176 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 9999998873 5677777666555544432 2333666776653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-13 Score=130.32 Aligned_cols=128 Identities=17% Similarity=0.212 Sum_probs=98.6
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCH--HHH
Q 003891 178 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV-YTVQGKM--DAA 254 (788)
Q Consensus 178 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~eA 254 (788)
...|++++|+..++++++.+|++..++..+|.++...|++++|+.+|+++++.+|+++.++..+|.+ +...|++ ++|
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 3456777777777777777777777777778877788888888888888888888888888888887 6777887 888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhh
Q 003891 255 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 305 (788)
Q Consensus 255 ~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a 305 (788)
+..++++++.+|++..+++.+|.++...|++++|+.+|+++++++|++...
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 888888888888888888888888888888888888888888888876543
|
| >2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=6.6e-13 Score=150.57 Aligned_cols=184 Identities=10% Similarity=0.066 Sum_probs=148.3
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCc-EEEEecCCCCC--------HHH---HHHHHHHHHHcCCCCCc
Q 003891 522 LTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNS-RLVVKCKPFCC--------DSV---RHRFLSTLEQLGLESLR 587 (788)
Q Consensus 522 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~-~l~l~~~~~~~--------~~~---~~~l~~~~~~~gi~~~r 587 (788)
++.+.+++++++++ .|..+.++++|.++.+..|+. +|+++|.+.+. ... .+.+++.++++|+. ++
T Consensus 258 ~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~-~~ 336 (499)
T 2r60_A 258 ERMELPAIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCR-GK 336 (499)
T ss_dssp GGTTSCEEEECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCB-TT
T ss_pred cCCCCcEEEEeecCccccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCC-ce
Confidence 45667789999976 899999999999998877776 67887762111 122 78899999999998 89
Q ss_pred EEEcCCcCCcHHHHHhcccc----cEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchh-HHHhhhCCccccc--
Q 003891 588 VDLLPLILLNHDHMQAYSLM----DISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV-SLLTKVGLKHLIA-- 659 (788)
Q Consensus 588 v~~~~~~~~~~~~~~~~~~~----Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~-~~l~~~gl~~~ia-- 659 (788)
|.|+|.++ .++....|+.+ |+++-|+.+ +.|.+++|||++|+|||+ +++++ .-+..-|..+++.
T Consensus 337 V~~~G~v~-~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~-------s~~~g~~e~v~~~~~g~l~~~ 408 (499)
T 2r60_A 337 VSMFPLNS-QQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVV-------TRNGGPAEILDGGKYGVLVDP 408 (499)
T ss_dssp EEEEECCS-HHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEE-------ESSBHHHHHTGGGTSSEEECT
T ss_pred EEECCCCC-HHHHHHHHHhcCcCCCEEEECcccCCCCcHHHHHHHcCCCEEE-------ecCCCHHHHhcCCceEEEeCC
Confidence 99999987 68899999999 999999977 679999999999999998 44432 1111223344444
Q ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 003891 660 KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRY 716 (788)
Q Consensus 660 ~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 716 (788)
.|.+++++...++.+|++.+.+++++.++...+. |+.+.+++.+++.|+++..+.
T Consensus 409 ~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~--fs~~~~~~~~~~~y~~~~~~~ 463 (499)
T 2r60_A 409 EDPEDIARGLLKAFESEETWSAYQEKGKQRVEER--YTWQETARGYLEVIQEIADRK 463 (499)
T ss_dssp TCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH--SBHHHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHhhh
Confidence 4899999999999999999999999998877543 899999999999999998754
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-12 Score=117.86 Aligned_cols=114 Identities=18% Similarity=0.161 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003891 23 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 102 (788)
Q Consensus 23 la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~ 102 (788)
.+..+..+|..++..|++++|+..|+++++.+|+++.+++++|.++...|++++|+..|+++++.+|++..+++.+|.++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 35668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCHHHHHHHHHHHHhhC------CCcHHHHHHHHHHH
Q 003891 103 KNRGDLESAIACYERCLAVS------PNFEIAKNNMAIAL 136 (788)
Q Consensus 103 ~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~l 136 (788)
...|++++|+..|+++++++ |++......+..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 99999999999999999999 88776665555443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.8e-13 Score=129.40 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=119.9
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCH--HH
Q 003891 143 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI-YKDRDNL--DK 219 (788)
Q Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~e 219 (788)
+...|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45578999999999999999999999999999999999999999999999999999999999999999 8899999 99
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003891 220 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 272 (788)
Q Consensus 220 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~ 272 (788)
|+.+|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++....
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999999999999999999999999999999999999999999999875543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-12 Score=136.90 Aligned_cols=177 Identities=11% Similarity=-0.012 Sum_probs=101.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCC------HH
Q 003891 95 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------AD 168 (788)
Q Consensus 95 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 168 (788)
+...+..+...|++++|+..++++++..+..+... .....+..+|.++...+++++|+.+++++++..+.. ..
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ-QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHH-HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHH-HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 33456677788888888888888888776655432 223344445666666666666666666666643322 12
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 248 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 248 (788)
++.++|.+|...|++++|+.+|+++++..... . ...+....+++++|.+|..+
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~--------------~-------------~~~~~~~~~~~nlg~~y~~~ 209 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEAL--------------H-------------DNEEFDVKVRYNHAKALYLD 209 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--------------S-------------CCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--------------c-------------cchhHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554444210000 0 00111133556666666666
Q ss_pred CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhC
Q 003891 249 GKMDAAAEMIEKAIAANPTY------AEAYNNLGVLYRDAG-SISLAIDAYEQCLKID 299 (788)
Q Consensus 249 g~~~eA~~~l~kal~~~p~~------~~~~~~la~~~~~~g-~~~eA~~~~~~al~l~ 299 (788)
|++++|++++++++++.+.. +.+++++|.+|..+| ++++|+++|++++.+.
T Consensus 210 ~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 210 SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 66666666666666653222 566777777777777 3577777777777653
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.3e-13 Score=121.11 Aligned_cols=113 Identities=18% Similarity=0.242 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 003891 58 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 137 (788)
Q Consensus 58 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 137 (788)
+.++.++|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|++.++++++++|++...+..++.++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 55678889999999999999999999999999999999999999999999999999999999988877666777788889
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 003891 138 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 171 (788)
Q Consensus 138 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 171 (788)
.+|.++...|++++|+++|+++++..|+ ++...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~ 120 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVK 120 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHH
Confidence 9999999999999999999999988875 44433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.9e-13 Score=125.61 Aligned_cols=115 Identities=27% Similarity=0.373 Sum_probs=106.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003891 198 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 277 (788)
Q Consensus 198 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~ 277 (788)
+.+...+..+|.++...|++++|+.+|+++++.+|++..++.++|.+|...|++++|+..|+++++++|++..+++.+|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHH
Q 003891 278 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 312 (788)
Q Consensus 278 ~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla 312 (788)
+|..+|++++|+.+|+++++++|++..++..+.+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 99999999999999999999999999877665444
|
| >3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5.4e-13 Score=156.59 Aligned_cols=186 Identities=11% Similarity=0.055 Sum_probs=146.7
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCC-------CHHHHHHHHHHHHHcCCCCCcEEEcCC
Q 003891 523 TNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFC-------CDSVRHRFLSTLEQLGLESLRVDLLPL 593 (788)
Q Consensus 523 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~-------~~~~~~~l~~~~~~~gi~~~rv~~~~~ 593 (788)
+.+.+++++++++ .|..+.+++++.++.+..|+.+|+|+|++.. .......+++.+++.|+. ++|.|+|.
T Consensus 569 ~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~-~~V~flG~ 647 (816)
T 3s28_A 569 DKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLN-GQFRWISS 647 (816)
T ss_dssp CTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCB-BBEEEECC
T ss_pred CCCCeEEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCC-CcEEEccC
Confidence 5566788888876 8999999999999998889999999998731 012678899999999998 99999996
Q ss_pred cCC---cHHHHHhcc-cccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchh-HHHhhhCCccccc--CCHHHH
Q 003891 594 ILL---NHDHMQAYS-LMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV-SLLTKVGLKHLIA--KNEDEY 665 (788)
Q Consensus 594 ~~~---~~~~~~~~~-~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~-~~l~~~gl~~~ia--~~~~~y 665 (788)
+.+ .++....|. .+||++-|+.+ +.|.+.+|||++|+|||+ +++|+ .-+..-|..+++. .|++++
T Consensus 648 ~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIa-------sd~GG~~EiV~dg~~Gllv~p~D~e~L 720 (816)
T 3s28_A 648 QMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFA-------TCKGGPAEIIVHGKSGFHIDPYHGDQA 720 (816)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEE-------ESSBTHHHHCCBTTTBEEECTTSHHHH
T ss_pred ccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEE-------eCCCChHHHHccCCcEEEeCCCCHHHH
Confidence 543 366777776 68999999977 779999999999999998 44542 1111114444443 389999
Q ss_pred HHHHHHHh----cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH--HHHHhc
Q 003891 666 VQLALQLA----SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM--WHRYCK 718 (788)
Q Consensus 666 ~~~a~~l~----~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~--~~~~~~ 718 (788)
++...++. .|++.+++++++.++.+.+. |+++.+++++++.|+.. |+....
T Consensus 721 A~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~--fSwe~~a~~ll~lY~~~g~wk~vs~ 777 (816)
T 3s28_A 721 ADTLADFFTKCKEDPSHWDEISKGGLQRIEEK--YTWQIYSQRLLTLTGVYGFWKHVSN 777 (816)
T ss_dssp HHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHS--CCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHhHhhhcch
Confidence 99886665 89999999999999987554 89999999999999974 655443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.46 E-value=3.5e-12 Score=132.15 Aligned_cols=246 Identities=14% Similarity=0.009 Sum_probs=188.0
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Q 003891 33 SLKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 111 (788)
Q Consensus 33 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A 111 (788)
-.+-.|+|.+++.-. -+..|.+ ....+.+.++|..+|++.... ..+....+...++..+. ++ |
T Consensus 22 n~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~~--~~---a 85 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFLD--TK---N 85 (310)
T ss_dssp HHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHHT--TT---C
T ss_pred HHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHhc--cc---H
Confidence 345679999999843 3344443 456677788899999887421 12223335555555442 22 8
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHH
Q 003891 112 IACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW--HYADAMYNLGVAYGEMLKFDMAIVF 189 (788)
Q Consensus 112 ~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~ 189 (788)
+..+++.++..+...... ..+|.++...|++++|++.+.+.+..+| .+.+++..++.++..+|+.+.|.+.
T Consensus 86 ~~~l~~l~~~~~~~~~~~-------~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~ 158 (310)
T 3mv2_B 86 IEELENLLKDKQNSPYEL-------YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTI 158 (310)
T ss_dssp CHHHHHTTTTSCCCHHHH-------HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHH-------HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 899999887754444332 3456666667899999999999999887 7889999999999999999999999
Q ss_pred HHHHHhcCCC----CHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 190 YELAFHFNPH----CAEACNNL--GVIYKDRD--NLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIE 259 (788)
Q Consensus 190 ~~~al~~~p~----~~~~~~~l--a~~~~~~g--~~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~l~ 259 (788)
++++.+.+|+ +......+ +++....| ++.+|...|+++.+..|+ ....+++ ++..+|++++|.+.++
T Consensus 159 l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 159 FDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHH
T ss_pred HHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHH
Confidence 9999999883 23334444 54466556 999999999999888887 3334444 8999999999999999
Q ss_pred HHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhH
Q 003891 260 KAIAA----------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 260 kal~~----------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
++++. +|++++++.+++.+...+|+ +|.++++++.+.+|+++-..
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 88776 48899999999999999998 89999999999999988654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.46 E-value=4.3e-12 Score=119.84 Aligned_cols=138 Identities=21% Similarity=0.192 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003891 20 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 99 (788)
Q Consensus 20 ~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la 99 (788)
....+..++.+|..+...|++++|+..|+++++.+|.+..+++.+|.++...|++++|+..++++++.+|.+..++..+|
T Consensus 9 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a 88 (166)
T 1a17_A 9 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHh
Q 003891 100 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYY 162 (788)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~ 162 (788)
.++...|++++|+.+|+++++++|++...+..++. +..+...|++++|+..+++....
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~-----~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE-----CNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH-----HHHHHHHHHHHHHHHcccchHHH
Confidence 99999999999999999999999998866543333 33334467888888888876543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-12 Score=118.57 Aligned_cols=121 Identities=16% Similarity=0.148 Sum_probs=97.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 003891 164 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 243 (788)
Q Consensus 164 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 243 (788)
|....++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+++++++.+|.+..++..+|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 44566778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 003891 244 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 284 (788)
Q Consensus 244 ~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~ 284 (788)
++...|++++|+.+++++++.+|++..++..++.++..+|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888777664
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-13 Score=135.31 Aligned_cols=151 Identities=20% Similarity=0.154 Sum_probs=117.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH----------------HHHHHHHH
Q 003891 146 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA----------------EACNNLGV 209 (788)
Q Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~ 209 (788)
.++++++.+.++......+.....+..+|..+...|++++|+..|+++++..|.+. .++.++|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 96 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 96 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 45666666666655555555667788888888888999999999998888887776 78889999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003891 210 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 289 (788)
Q Consensus 210 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~ 289 (788)
++...|++++|+.+++++++.+|++..+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++..++.
T Consensus 97 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 97 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888877776
Q ss_pred -HHHHHHH
Q 003891 290 -DAYEQCL 296 (788)
Q Consensus 290 -~~~~~al 296 (788)
..|.+.+
T Consensus 177 ~~~~~~~f 184 (198)
T 2fbn_A 177 KLTFGGMF 184 (198)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 4444443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-12 Score=137.01 Aligned_cols=170 Identities=14% Similarity=0.077 Sum_probs=124.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP------AYYNLGVVYSELMQYDTALGCYEKAALERPMY------AEA 94 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~------~~~ 94 (788)
+...+..+...|++++|+..++++++..+.... .+..+|.++...+++++|+.+|+++++..+.. ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 455677888999999999999999998776654 33458999999999999999999999964432 447
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCC------HH
Q 003891 95 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY------AD 168 (788)
Q Consensus 95 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 168 (788)
+.++|.+|...|++++|+.+|+++++............+.++..+|.++...|++++|+.++++++++.+.. ..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 999999999999999999999999964321111122345566677777777777777777777777654322 45
Q ss_pred HHHHHHHHHHHcCC-hHHHHHHHHHHHhc
Q 003891 169 AMYNLGVAYGEMLK-FDMAIVFYELAFHF 196 (788)
Q Consensus 169 ~~~~la~~~~~~g~-~~~A~~~~~~al~~ 196 (788)
+++.+|.++..+|+ +++|+++|++++.+
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 66666666666663 46666666666543
|
| >3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.7e-13 Score=126.96 Aligned_cols=158 Identities=8% Similarity=0.071 Sum_probs=119.8
Q ss_pred eEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc
Q 003891 527 ITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 604 (788)
Q Consensus 527 ~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~ 604 (788)
++|++++++ .|..+.++++|.++ +..|+.+|+++|.+ +....+++.+++.|+ ++.| |.++ .++....|
T Consensus 3 ~~i~~~G~~~~~Kg~~~li~a~~~l-~~~~~~~l~i~G~g----~~~~~~~~~~~~~~~---~v~~-g~~~-~~~~~~~~ 72 (166)
T 3qhp_A 3 FKIAMVGRYSNEKNQSVLIKAVALS-KYKQDIVLLLKGKG----PDEKKIKLLAQKLGV---KAEF-GFVN-SNELLEIL 72 (166)
T ss_dssp EEEEEESCCSTTTTHHHHHHHHHTC-TTGGGEEEEEECCS----TTHHHHHHHHHHHTC---EEEC-CCCC-HHHHHHHH
T ss_pred eEEEEEeccchhcCHHHHHHHHHHh-ccCCCeEEEEEeCC----ccHHHHHHHHHHcCC---eEEE-eecC-HHHHHHHH
Confidence 567777765 89999999999886 55699999999976 456788888899888 7888 9987 78999999
Q ss_pred ccccEeecCCCC-CCchhHHHHhhhCC-ceeecC-CCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHHHH
Q 003891 605 SLMDISLDTFPY-AGTTTTCESLYMGV-PCVTMA-GSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALAN 681 (788)
Q Consensus 605 ~~~Dv~Ld~~~~-~g~~t~~eal~~Gv-Pvvt~~-g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~ 681 (788)
+.+|+++-|+.+ +.|.+.+|||++|+ |||+.. +.....-+ ..-+. -+...|.+++++...++.+|++.++.
T Consensus 73 ~~adv~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~-----~~~~~-~~~~~~~~~l~~~i~~l~~~~~~~~~ 146 (166)
T 3qhp_A 73 KTCTLYVHAANVESEAIACLEAISVGIVPVIANSPLSATRQFA-----LDERS-LFEPNNAKDLSAKIDWWLENKLERER 146 (166)
T ss_dssp TTCSEEEECCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGC-----SSGGG-EECTTCHHHHHHHHHHHHHCHHHHHH
T ss_pred HhCCEEEECCcccCccHHHHHHHhcCCCcEEeeCCCCchhhhc-----cCCce-EEcCCCHHHHHHHHHHHHhCHHHHHH
Confidence 999999999977 77999999999996 999832 22221111 11111 23356999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCChHHHHH
Q 003891 682 LRMSLRDLMSKSPVCDGQNFAL 703 (788)
Q Consensus 682 ~r~~~~~~~~~~~~~~~~~~~~ 703 (788)
++++.++... . |+++.+++
T Consensus 147 ~~~~~~~~~~-~--~s~~~~~~ 165 (166)
T 3qhp_A 147 MQNEYAKSAL-N--YTLENSVI 165 (166)
T ss_dssp HHHHHHHHHH-H--HC------
T ss_pred HHHHHHHHHH-H--CChhhhhc
Confidence 9999887653 2 66666553
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-12 Score=117.48 Aligned_cols=121 Identities=22% Similarity=0.281 Sum_probs=94.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 003891 165 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 244 (788)
Q Consensus 165 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~ 244 (788)
.....+..+|..+...|++++|+..+++++...|++..++..+|.++...|++++|+.+++++++..|++..++..+|.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 34556777777777888888888888888877777777788888888888888888888888888888777788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 003891 245 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 285 (788)
Q Consensus 245 ~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~ 285 (788)
+...|++++|+.+++++++.+|++..++..++.++..+|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88888888888888888888887777788888877777764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4e-12 Score=145.42 Aligned_cols=166 Identities=10% Similarity=0.036 Sum_probs=156.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-
Q 003891 147 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK----------FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD- 215 (788)
Q Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g- 215 (788)
...++|++.++++++.+|++..+|+..+.++...|+ ++++++.++++++.+|++..+|+..+.++.+.+
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 345788999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred -CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------
Q 003891 216 -NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG-KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA----------- 282 (788)
Q Consensus 216 -~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~----------- 282 (788)
++++++++++++++.+|.+..+|...+.++...| .+++++++++++++.+|.+..+|..++.++..+
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 7799999999999999999999999999999999 999999999999999999999999999999885
Q ss_pred ---CCHHHHHHHHHHHHhhCCCChhhHHhHHHH
Q 003891 283 ---GSISLAIDAYEQCLKIDPDSRNAGQNRLLA 312 (788)
Q Consensus 283 ---g~~~eA~~~~~~al~l~p~~~~a~~~~lla 312 (788)
+.+++|++++++++.++|++..+|.++...
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~l 235 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWL 235 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 568999999999999999999998875433
|
| >2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-12 Score=127.56 Aligned_cols=155 Identities=15% Similarity=0.136 Sum_probs=125.0
Q ss_pred CCCCCCeEEEecCC---CCcCCHHHHHHHHHHH--hHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEE-cCCc
Q 003891 521 ALTNGFITFGSFNN---LAKITPKVLQVWARIL--CAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDL-LPLI 594 (788)
Q Consensus 521 ~~~~~~~~f~~~~~---~~K~~~~~~~~~~~il--~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~-~~~~ 594 (788)
+++++. +++++++ ..|..+.++++|.++. +..|+.+|+++|.+ .+.....+++.+++.| +|.| .|.+
T Consensus 32 ~~~~~~-~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~--~~~~~~~l~~~~~~~~----~v~~~~g~~ 104 (200)
T 2bfw_A 32 GMDEGV-TFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKG--DPELEGWARSLEEKHG----NVKVITEML 104 (200)
T ss_dssp TCCSCE-EEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCB--CHHHHHHHHHHHHHCT----TEEEECSCC
T ss_pred CCCCCC-EEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCC--ChHHHHHHHHHHHhcC----CEEEEeccC
Confidence 444443 5666665 5699999999999998 88899999999876 2236788888888887 8999 9998
Q ss_pred CCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhh-hCCcccccC--CHHHHHHHHH
Q 003891 595 LLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK-VGLKHLIAK--NEDEYVQLAL 670 (788)
Q Consensus 595 ~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~-~gl~~~ia~--~~~~y~~~a~ 670 (788)
+ .++....|+.+|++|.|+.+ +.+++++|||++|+|||+ +++++ +-.. -|-..++.. |.+++++...
T Consensus 105 ~-~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI~-------~~~~~-~~e~~~~~~g~~~~~~~~~~l~~~i~ 175 (200)
T 2bfw_A 105 S-REFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIA-------SAVGG-LRDIITNETGILVKAGDPGELANAIL 175 (200)
T ss_dssp C-HHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEE-------ESCHH-HHHHCCTTTCEEECTTCHHHHHHHHH
T ss_pred C-HHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEEE-------eCCCC-hHHHcCCCceEEecCCCHHHHHHHHH
Confidence 7 68899999999999999977 568999999999999998 44442 1111 255555554 9999999999
Q ss_pred HHhc-CHHHHHHHHHHHHHHhh
Q 003891 671 QLAS-DVTALANLRMSLRDLMS 691 (788)
Q Consensus 671 ~l~~-d~~~~~~~r~~~~~~~~ 691 (788)
++.+ |++.+++++++.++...
T Consensus 176 ~l~~~~~~~~~~~~~~a~~~~~ 197 (200)
T 2bfw_A 176 KALELSRSDLSKFRENCKKRAM 197 (200)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHH
Confidence 9999 99999999999887754
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-12 Score=123.19 Aligned_cols=116 Identities=22% Similarity=0.219 Sum_probs=106.6
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 003891 164 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 243 (788)
Q Consensus 164 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~ 243 (788)
+.....++.+|.++...|++++|+..|+++++.+|++..++.++|.++...|++++|+.+|+++++++|++..+++++|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003891 244 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 279 (788)
Q Consensus 244 ~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~ 279 (788)
+|..+|++++|+.+|+++++++|++..+++..+...
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 999999999999999999999999988776665543
|
| >3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=7.2e-13 Score=147.19 Aligned_cols=176 Identities=13% Similarity=0.101 Sum_probs=143.7
Q ss_pred CCCCCCeEEEecCCC---CcCCHHHHHHHHHHHhHc--CCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcC
Q 003891 521 ALTNGFITFGSFNNL---AKITPKVLQVWARILCAV--PNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLIL 595 (788)
Q Consensus 521 ~~~~~~~~f~~~~~~---~K~~~~~~~~~~~il~~~--p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~ 595 (788)
+++++ +++++++++ .|..+.+++++.++.... |+.+|+++|.+ .......+++..++.| +.+.|.|.++
T Consensus 247 ~~~~~-~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g--~~~~~~~l~~~~~~~~---~~~~~~g~~~ 320 (439)
T 3fro_A 247 GMDEG-VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKG--DPELEGWARSLEEKHG---NVKVITEMLS 320 (439)
T ss_dssp TCCSC-EEEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCC--CHHHHHHHHHHHHHCT---TEEEECSCCC
T ss_pred CCCCC-cEEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCC--ChhHHHHHHHHHhhcC---CEEEEcCCCC
Confidence 45666 788888875 589999999999999887 99999999976 2334488888888888 6888999877
Q ss_pred CcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchh-HHHhhhCCccccc--CCHHHHHHHHHH
Q 003891 596 LNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV-SLLTKVGLKHLIA--KNEDEYVQLALQ 671 (788)
Q Consensus 596 ~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~-~~l~~~gl~~~ia--~~~~~y~~~a~~ 671 (788)
.++....|+.+|+++-|+.+ +.+++.+|||++|+|||+- ++++ .-+..-| .+++. .|++++++...+
T Consensus 321 -~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~Pvi~s-------~~~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ 391 (439)
T 3fro_A 321 -REFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIAS-------AVGGLRDIITNE-TGILVKAGDPGELANAILK 391 (439)
T ss_dssp -HHHHHHHHTTCSEEEECBSCCSSCHHHHHHHHTTCEEEEE-------SSTHHHHHCCTT-TCEEECTTCHHHHHHHHHH
T ss_pred -HHHHHHHHHHCCEEEeCCCCCCccHHHHHHHHCCCCeEEc-------CCCCcceeEEcC-ceEEeCCCCHHHHHHHHHH
Confidence 68889999999999999977 6689999999999999983 3432 1111124 44444 499999999999
Q ss_pred Hhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 003891 672 LAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 714 (788)
Q Consensus 672 l~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 714 (788)
+.+ |++.+++++++.++.. +. |+++.+++++++.|+++.+
T Consensus 392 ll~~~~~~~~~~~~~~~~~~-~~--~s~~~~~~~~~~~~~~~~~ 432 (439)
T 3fro_A 392 ALELSRSDLSKFRENCKKRA-MS--FSWEKSAERYVKAYTGSID 432 (439)
T ss_dssp HHHHTTTTTHHHHHHHHHHH-HT--SCHHHHHHHHHHHHHTCSC
T ss_pred HHhcCHHHHHHHHHHHHHHH-hh--CcHHHHHHHHHHHHHHHHH
Confidence 999 9999999999999887 33 8999999999999988754
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-13 Score=154.00 Aligned_cols=152 Identities=18% Similarity=0.179 Sum_probs=135.2
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---------------HHHHHHHHH
Q 003891 145 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---------------AEACNNLGV 209 (788)
Q Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~ 209 (788)
..+++++|+..++++++..|+....+..+|..+...|++++|+..|+++++++|.+ ..+++++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888889999999999999999999999999999999988 689999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003891 210 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 289 (788)
Q Consensus 210 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~ 289 (788)
+|.++|++++|+.+|+++++++|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.++..++++++|.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred H-HHHHHH
Q 003891 290 D-AYEQCL 296 (788)
Q Consensus 290 ~-~~~~al 296 (788)
. .|++++
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 5 344443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.5e-12 Score=116.66 Aligned_cols=106 Identities=24% Similarity=0.287 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------H
Q 003891 20 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-------A 92 (788)
Q Consensus 20 ~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~-------~ 92 (788)
....+.++..+|..++.+|+|++|+..|+++++++|+++.++.++|.+|..+|++++|+..++++++++|++ .
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence 345677899999999999999999999999999999999999999999999999999999999999987764 4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Q 003891 93 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 125 (788)
Q Consensus 93 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 125 (788)
.++..+|.++..+|++++|+++|+++++..|+.
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 689999999999999999999999999998863
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-11 Score=110.29 Aligned_cols=117 Identities=42% Similarity=0.622 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 003891 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 246 (788)
Q Consensus 167 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~ 246 (788)
...+..+|.++...|++++|++.++++++..|.+..++..+|.++...|++++|+.+++++++..|.+...+..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 45666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003891 247 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 283 (788)
Q Consensus 247 ~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g 283 (788)
..|++++|+.+++++++.+|++..++..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 7777777777777777777777777777777665543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.6e-12 Score=115.41 Aligned_cols=101 Identities=16% Similarity=0.155 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003891 203 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 282 (788)
Q Consensus 203 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~ 282 (788)
.++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhhCCCCh
Q 003891 283 GSISLAIDAYEQCLKIDPDSR 303 (788)
Q Consensus 283 g~~~eA~~~~~~al~l~p~~~ 303 (788)
|++++|+..|+++++++|++.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888888754
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.3e-12 Score=119.50 Aligned_cols=107 Identities=11% Similarity=0.067 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Q 003891 202 EACNNLGVIYKDRDNLDKAVECYQMALSIKPN-------FSQ-----SLNNLGVVYTVQGKMDAAAEMIEKAIAA----- 264 (788)
Q Consensus 202 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~eA~~~l~kal~~----- 264 (788)
..+.+.|..+...|++++|+..|+++++++|+ +.. +|.++|.++..+|++++|+..+++++++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 44555666666666666666666666666665 333 8888888888888888888888888888
Q ss_pred --CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHh
Q 003891 265 --NPTYAEAY----NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 308 (788)
Q Consensus 265 --~p~~~~~~----~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 308 (788)
+|++..+| +++|.++..+|++++|+..|+++++++|++..+...
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 99999999 999999999999999999999999999988766544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.38 E-value=5.6e-12 Score=115.20 Aligned_cols=104 Identities=16% Similarity=0.162 Sum_probs=53.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003891 198 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 277 (788)
Q Consensus 198 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~ 277 (788)
+.++..+..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..++++++++|+++.+++.+|.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 33444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 278 LYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 278 ~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
++..+|++++|+..|+++++++|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 555555555555555555555444
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=7e-13 Score=130.27 Aligned_cols=178 Identities=16% Similarity=0.089 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 003891 60 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 139 (788)
Q Consensus 60 ~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l 139 (788)
.....+......|++++|.+.++......+.....+..+|..+...|++++|+..|++++++.|.++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-------- 77 (198)
T 2fbn_A 6 HHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ-------- 77 (198)
T ss_dssp ----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH--------
T ss_pred cccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh--------
Confidence 344455666677788888877776666666677788888888888889999999998888887775411000
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 003891 140 GTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK 219 (788)
Q Consensus 140 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e 219 (788)
........+ ...++.++|.++...|++++|+..++++++.+|++..+++.+|.++..+|++++
T Consensus 78 ------------~~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~ 140 (198)
T 2fbn_A 78 ------------ILLDKKKNI-----EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEE 140 (198)
T ss_dssp ------------HHHHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred ------------hHHHHHHHH-----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHH
Confidence 000000000 134556666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Q 003891 220 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA-EMIEKAI 262 (788)
Q Consensus 220 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~-~~l~kal 262 (788)
|+.+|+++++++|++..++..++.++...++.+++. ..+.+.+
T Consensus 141 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 141 AKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666666666666666666666666666555 3344433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.8e-11 Score=108.69 Aligned_cols=119 Identities=28% Similarity=0.378 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003891 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 101 (788)
Q Consensus 22 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~ 101 (788)
..+..+..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+++++++.+|.+..++..+|.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 003891 102 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 140 (788)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg 140 (788)
+...|++++|+.+++++++..|++...+..++.++..++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 999999999999999999999999887777777766654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-11 Score=112.19 Aligned_cols=116 Identities=20% Similarity=0.364 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 103 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~ 103 (788)
...++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+.+++++++.+|.+..++..+|.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 44588899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 003891 104 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 139 (788)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l 139 (788)
..|++++|+.+|+++++.+|++...+..++.++...
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 999999999999999999999887777777666554
|
| >2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8 | Back alignment and structure |
|---|
Probab=99.36 E-value=6.6e-13 Score=128.14 Aligned_cols=150 Identities=13% Similarity=0.013 Sum_probs=112.5
Q ss_pred CCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHH--HcCCCCCcEEEcCCc
Q 003891 519 TPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLE--QLGLESLRVDLLPLI 594 (788)
Q Consensus 519 ~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~--~~gi~~~rv~~~~~~ 594 (788)
...++++..+|++++++ .|..+.++++|.++ |+.+|+++|.+.. ...+++.++ ..|+. ++|.|.|.+
T Consensus 16 ~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l----~~~~l~i~G~~~~----~~~l~~~~~~~~~~l~-~~v~~~g~~ 86 (177)
T 2f9f_A 16 KFKFKCYGDFWLSVNRIYPEKRIELQLEVFKKL----QDEKLYIVGWFSK----GDHAERYARKIMKIAP-DNVKFLGSV 86 (177)
T ss_dssp TCCCCCCCSCEEEECCSSGGGTHHHHHHHHHHC----TTSCEEEEBCCCT----TSTHHHHHHHHHHHSC-TTEEEEESC
T ss_pred ccccCCCCCEEEEEeccccccCHHHHHHHHHhC----CCcEEEEEecCcc----HHHHHHHHHhhhcccC-CcEEEeCCC
Confidence 34556666778888876 78888888887765 8999999997632 245666666 77887 899999998
Q ss_pred CCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchh--HHHhhhCCcccc-cCCHHHHHHHHH
Q 003891 595 LLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLI-AKNEDEYVQLAL 670 (788)
Q Consensus 595 ~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~--~~l~~~gl~~~i-a~~~~~y~~~a~ 670 (788)
+ .++....|+.+|+++-|+.+ +.+.+.+|||++|+|||+. +.++ .++. -|-..++ ..|.+++++...
T Consensus 87 ~-~~e~~~~~~~adi~v~ps~~e~~~~~~~Eama~G~PvI~~-------~~~~~~e~i~-~~~~g~~~~~d~~~l~~~i~ 157 (177)
T 2f9f_A 87 S-EEELIDLYSRCKGLLCTAKDEDFGLTPIEAMASGKPVIAV-------NEGGFKETVI-NEKTGYLVNADVNEIIDAMK 157 (177)
T ss_dssp C-HHHHHHHHHHCSEEEECCSSCCSCHHHHHHHHTTCCEEEE-------SSHHHHHHCC-BTTTEEEECSCHHHHHHHHH
T ss_pred C-HHHHHHHHHhCCEEEeCCCcCCCChHHHHHHHcCCcEEEe-------CCCCHHHHhc-CCCccEEeCCCHHHHHHHHH
Confidence 8 67889999999999997755 7788999999999999983 3331 1111 1333444 589999999999
Q ss_pred HHhcCHHH-HHHHHHHH
Q 003891 671 QLASDVTA-LANLRMSL 686 (788)
Q Consensus 671 ~l~~d~~~-~~~~r~~~ 686 (788)
++.+|++. ++++|+..
T Consensus 158 ~l~~~~~~~~~~~~~~a 174 (177)
T 2f9f_A 158 KVSKNPDKFKKDCFRRA 174 (177)
T ss_dssp HHHHCTTTTHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHH
Confidence 99999875 44444443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.36 E-value=3.4e-12 Score=118.33 Aligned_cols=106 Identities=13% Similarity=0.101 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 003891 23 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-------YAP-----AYYNLGVVYSELMQYDTALGCYEKAALE--- 87 (788)
Q Consensus 23 la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~lg~~~~~~g~~~~A~~~~~kal~~--- 87 (788)
.+..+..+|..++..|+|++|+..|+++++++|+ +.. +|.++|.++..+|+|++|+..|++++++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 4667889999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred ----CCCCHHHH----HHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHH
Q 003891 88 ----RPMYAEAY----CNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 128 (788)
Q Consensus 88 ----~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 128 (788)
+|++..+| +++|.++..+|++++|+..|+++++++|++...
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 99999999 999999999999999999999999999887533
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-11 Score=117.28 Aligned_cols=118 Identities=17% Similarity=0.148 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------------------DPHYAPAYYNLGVVYSELMQYDTALGCYEK 83 (788)
Q Consensus 22 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~k 83 (788)
..+..+..+|..++..|++++|+..|.++++. +|.+..+++++|.+|..+|++++|+..+++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 45677999999999999999999999999999 777789999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHh
Q 003891 84 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-IAKNNMAIALTDL 139 (788)
Q Consensus 84 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~l~~l 139 (788)
+++++|.++.+++.+|.+|..+|++++|+..|+++++++|++. .....+..+...+
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988 4455555444443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.36 E-value=7e-12 Score=122.80 Aligned_cols=157 Identities=19% Similarity=0.180 Sum_probs=130.6
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHH
Q 003891 145 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF------NPHCAEACNNLGVIYKDRDNLD 218 (788)
Q Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~ 218 (788)
..|++++|.+.++......+....++..+|.++...|++++|+..+++++.. .+....++.++|.++...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4689999999666554433366789999999999999999999999999984 3445778999999999999999
Q ss_pred HHHHHHHHHHhh---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCH
Q 003891 219 KAVECYQMALSI---KPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP--TY----AEAYNNLGVLYRDAGSI 285 (788)
Q Consensus 219 eA~~~~~~al~~---~p~~----~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p--~~----~~~~~~la~~~~~~g~~ 285 (788)
+|+.+++++++. .+++ ..++.++|.++...|++++|+.++++++...+ .+ ..++..+|.++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 999999999988 4433 45789999999999999999999999997632 22 34578999999999999
Q ss_pred HHHHHHHHHHHhhCCC
Q 003891 286 SLAIDAYEQCLKIDPD 301 (788)
Q Consensus 286 ~eA~~~~~~al~l~p~ 301 (788)
++|.+++++++++...
T Consensus 164 ~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 164 LEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-11 Score=112.99 Aligned_cols=124 Identities=16% Similarity=0.077 Sum_probs=112.5
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 003891 161 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN 240 (788)
Q Consensus 161 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 240 (788)
..++.++..+..+|.++...|++++|+..|++++..+|++..++.++|.++...|++++|+.+++++++.+|++..++..
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCC
Q 003891 241 LGVVYTVQGKMDAAAEMIEKAIAANPT-----YAEAYNNLGVLYRDAGS 284 (788)
Q Consensus 241 la~~~~~~g~~~eA~~~l~kal~~~p~-----~~~~~~~la~~~~~~g~ 284 (788)
+|.++...|++++|+..|+++++++|+ +..+...+..+..+...
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 131 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887 66677777766555443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=5e-12 Score=113.55 Aligned_cols=100 Identities=18% Similarity=0.223 Sum_probs=92.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 106 (788)
++.+|..+...|++++|+..|+++++.+|++..+|+.+|.++...|++++|+..|+++++++|++..++..+|.++...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCcH
Q 003891 107 DLESAIACYERCLAVSPNFE 126 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~~ 126 (788)
++++|+..|+++++++|++.
T Consensus 100 ~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHhCcCCC
Confidence 99999999999999999764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.35 E-value=5.8e-11 Score=122.99 Aligned_cols=221 Identities=11% Similarity=-0.008 Sum_probs=164.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 106 (788)
.+.+.+++...|++.... ..+....+...++..+. ++ |+..+++.++..+.....+..+|.++...|
T Consensus 48 ~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~~--~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g 114 (310)
T 3mv2_B 48 LFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFLD--TK---NIEELENLLKDKQNSPYELYLLATAQAILG 114 (310)
T ss_dssp HHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHHT--TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHhc--cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 444556677778776421 12222334444444432 22 888898888776666777789999999999
Q ss_pred CHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCC----CHHHHHHH--HHHHH
Q 003891 107 DLESAIACYERCLAVSP--NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH----YADAMYNL--GVAYG 178 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p--~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l--a~~~~ 178 (788)
++++|++.+.+.+..+| .+.+.. ..+..++..+|+.+.|.+.++++.+.+|+ +......+ +++..
T Consensus 115 ~~eeAL~~l~~~i~~~~~~~~lea~-------~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l 187 (310)
T 3mv2_B 115 DLDKSLETCVEGIDNDEAEGTTELL-------LLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKF 187 (310)
T ss_dssp CHHHHHHHHHHHHTSSCSTTHHHHH-------HHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCcCcHHHH-------HHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHH
Confidence 99999999999998887 444443 34445555577999999999999998883 22333343 54466
Q ss_pred HcC--ChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------CCCCHHHHHHHHHH
Q 003891 179 EML--KFDMAIVFYELAFHFNPH--CAEACNNLGVIYKDRDNLDKAVECYQMALSI----------KPNFSQSLNNLGVV 244 (788)
Q Consensus 179 ~~g--~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~----------~p~~~~~~~~la~~ 244 (788)
..| ++++|...|+++.+..|+ ....+++ ++..+|++++|.+.++++++. +|+++.++.+++.+
T Consensus 188 ~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l 264 (310)
T 3mv2_B 188 ATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITL 264 (310)
T ss_dssp HHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHH
T ss_pred HhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHH
Confidence 666 999999999999888886 2334444 899999999999999988776 48899999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003891 245 YTVQGKMDAAAEMIEKAIAANPTYAEAY 272 (788)
Q Consensus 245 ~~~~g~~~eA~~~l~kal~~~p~~~~~~ 272 (788)
...+|+ +|.++++++.+.+|+++.+.
T Consensus 265 ~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 265 ALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 999998 89999999999999998654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.1e-11 Score=107.38 Aligned_cols=104 Identities=20% Similarity=0.298 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003891 203 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 282 (788)
Q Consensus 203 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~ 282 (788)
.+..+|.++...|++++|+.+|++++...|.+..++..+|.++...|++++|+..++++++..|+++.++..+|.++...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CCHHHHHHHHHHHHhhCCCChhhH
Q 003891 283 GSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 283 g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
|++++|.++|+++++++|++..++
T Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~ 109 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHEANNPQLK 109 (118)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHH
Confidence 444444444444444444444433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.34 E-value=7.1e-12 Score=118.68 Aligned_cols=112 Identities=17% Similarity=0.131 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFHF------------------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 230 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 230 (788)
.+..+|..++..|++++|+..|++++.. +|....++.++|.++..+|++++|+..+++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4455556666666666666666666555 3344455555555555555555555555555555
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHH
Q 003891 231 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA-EAYNNLGVLYR 280 (788)
Q Consensus 231 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~-~~~~~la~~~~ 280 (788)
+|+++.+++.+|.+|..+|++++|+..|+++++++|++. .+...++.+..
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555554 33444444433
|
| >2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A | Back alignment and structure |
|---|
Probab=99.34 E-value=9.7e-12 Score=140.35 Aligned_cols=170 Identities=12% Similarity=0.001 Sum_probs=132.9
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEE-EcCCcCCcHHHH
Q 003891 525 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVD-LLPLILLNHDHM 601 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~-~~~~~~~~~~~~ 601 (788)
+.+++++++++ .|..+.++++|.++.+ ++.+|+|+|.+ .+..++.+++..+++| ++|+ |.|. + .++..
T Consensus 291 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g--~~~~~~~l~~~~~~~~---~~v~~~~g~-~-~~~~~ 361 (485)
T 2qzs_A 291 KVPLFAVVSRLTSQKGLDLVLEALPGLLE--QGGQLALLGAG--DPVLQEGFLAAAAEYP---GQVGVQIGY-H-EAFSH 361 (485)
T ss_dssp TSCEEEEEEEESGGGCHHHHHHHHHHHHH--TTCEEEEEEEE--CHHHHHHHHHHHHHST---TTEEEEESC-C-HHHHH
T ss_pred CCeEEEEeccCccccCHHHHHHHHHHHhh--CCcEEEEEeCC--chHHHHHHHHHHHhCC---CcEEEeCCC-C-HHHHH
Confidence 56778888865 8999999999999876 58999999876 2346788888888875 6886 7777 3 45557
Q ss_pred HhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchh-HHHhhhC---------Cccccc--CCHHHHHHH
Q 003891 602 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV-SLLTKVG---------LKHLIA--KNEDEYVQL 668 (788)
Q Consensus 602 ~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~-~~l~~~g---------l~~~ia--~~~~~y~~~ 668 (788)
..|+.+|+++-|+.+ +.|.+.+|||++|+|||+ +++++ .=+..-| ..+++. .|.+++++.
T Consensus 362 ~~~~~adv~v~pS~~E~~g~~~lEAma~G~PvI~-------s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~ 434 (485)
T 2qzs_A 362 RIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLV-------RRTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRA 434 (485)
T ss_dssp HHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEE-------ESSHHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHH
T ss_pred HHHHhCCEEEECCccCCCcHHHHHHHHCCCCEEE-------CCCCCccceeccCccccccccccceEEECCCCHHHHHHH
Confidence 889999999999977 779999999999999998 44432 1111112 345554 389999999
Q ss_pred HHHHh---cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 003891 669 ALQLA---SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 715 (788)
Q Consensus 669 a~~l~---~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 715 (788)
..++. .|++.+++++++.++ ..|+++.+++++++.|+++...
T Consensus 435 i~~ll~~~~~~~~~~~~~~~~~~-----~~fs~~~~~~~~~~ly~~~~~~ 479 (485)
T 2qzs_A 435 IRRAFVLWSRPSLWRFVQRQAMA-----MDFSWQVAAKSYRELYYRLKLE 479 (485)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh-----hcCCHHHHHHHHHHHHHHhhhh
Confidence 99998 799999999887763 4599999999999999988654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.1e-12 Score=124.52 Aligned_cols=159 Identities=18% Similarity=0.153 Sum_probs=113.1
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCH
Q 003891 35 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAEAYCNMGVIYKNRGDL 108 (788)
Q Consensus 35 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~------~p~~~~~~~~la~~~~~~g~~ 108 (788)
+..|++++|++.++......+....++..+|.++...|++++|+.+++++++. .+....++..+|.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 46799999999665554433367889999999999999999999999999983 344577899999999999999
Q ss_pred HHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHH
Q 003891 109 ESAIACYERCLAV---SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWH--Y----ADAMYNLGVAYGE 179 (788)
Q Consensus 109 ~~A~~~~~~al~~---~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~ 179 (788)
++|+.++++++++ .+++. ...+.++..+|.++...|++++|+.+++++++..+. + ..++..+|.++..
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDP---LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccH---HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 9999999999988 33222 123556667777777777888888888877754221 1 1234455555555
Q ss_pred cCChHHHHHHHHHHHhc
Q 003891 180 MLKFDMAIVFYELAFHF 196 (788)
Q Consensus 180 ~g~~~~A~~~~~~al~~ 196 (788)
.|++++|+..+++++++
T Consensus 160 ~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 160 EKNLLEAQQHWLRARDI 176 (203)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 55555555555555543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=4.6e-11 Score=105.13 Aligned_cols=112 Identities=25% Similarity=0.296 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 103 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~ 103 (788)
+..++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|.+..++..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 003891 104 NRGDLESAIACYERCLAVSPNFEIAKNNMAIA 135 (788)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 135 (788)
..|++++|+..++++++.+|++...+..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 99999999999999999999998776655543
|
| >2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-12 Score=138.98 Aligned_cols=174 Identities=13% Similarity=0.077 Sum_probs=135.5
Q ss_pred CCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhH-cCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCC
Q 003891 520 PALTNGFITFGSFNNL--AKITPKVLQVWARILCA-VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILL 596 (788)
Q Consensus 520 ~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~-~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~ 596 (788)
.+++++.+++++++++ .|..+.+++++.++... .|+.+|+++|.+. .+.+++.++++|+. ++|.|.|.
T Consensus 190 ~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~g~-----~~~~~~~~~~~~~~-~~v~~~g~--- 260 (374)
T 2iw1_A 190 NGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDK-----PRKFEALAEKLGVR-SNVHFFSG--- 260 (374)
T ss_dssp TTCCTTCEEEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSC-----CHHHHHHHHHHTCG-GGEEEESC---
T ss_pred hCCCCCCeEEEEeccchhhcCHHHHHHHHHHhHhccCCceEEEEEcCCC-----HHHHHHHHHHcCCC-CcEEECCC---
Confidence 3456677888888876 78999999999988777 5899999999862 25677888889997 89999997
Q ss_pred cHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC---CHHHHHHHHHHH
Q 003891 597 NHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQL 672 (788)
Q Consensus 597 ~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~l 672 (788)
.++....|+.+|+++-|+.+ +.|++++|||++|+|||+....... .++.. |-.+++.. |.+++++...++
T Consensus 261 ~~~~~~~~~~ad~~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~-----e~i~~-~~~g~~~~~~~~~~~l~~~i~~l 334 (374)
T 2iw1_A 261 RNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYA-----HYIAD-ANCGTVIAEPFSQEQLNEVLRKA 334 (374)
T ss_dssp CSCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEEETTSTTT-----HHHHH-HTCEEEECSSCCHHHHHHHHHHH
T ss_pred cccHHHHHHhcCEEEeccccCCcccHHHHHHHCCCCEEEecCCCch-----hhhcc-CCceEEeCCCCCHHHHHHHHHHH
Confidence 35678888889999999976 7799999999999999985432221 22322 33344443 899999999999
Q ss_pred hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 003891 673 ASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 711 (788)
Q Consensus 673 ~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 711 (788)
.+|++.+++++++.++...+ +++..+++.+++.++.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~ 370 (374)
T 2iw1_A 335 LTQSPLRMAWAENARHYADT---QDLYSLPEKAADIITG 370 (374)
T ss_dssp HHCHHHHHHHHHHHHHHHHH---SCCSCHHHHHHHHHHC
T ss_pred HcChHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHH
Confidence 99999999999999988764 3556667777666653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-12 Score=146.54 Aligned_cols=145 Identities=16% Similarity=0.122 Sum_probs=101.1
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHH
Q 003891 37 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---------------AEAYCNMGVI 101 (788)
Q Consensus 37 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~---------------~~~~~~la~~ 101 (788)
.+++++|+..|+++++..|..+..+..+|..++..|+|++|+..|+++++++|.+ ..++.++|.+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888888888888888888899999999999999999999998888887 5677777777
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003891 102 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 181 (788)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 181 (788)
|..+|++++|+.+|+++++++|++..++++++.++ ...|++++|+..|+++++++|++..++..++.++...+
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~-------~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~ 399 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQ-------LLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAK 399 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-------HHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH-------HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 77777777777777777777776654444333333 33446666666666666666666666666666666666
Q ss_pred ChHHHHH
Q 003891 182 KFDMAIV 188 (788)
Q Consensus 182 ~~~~A~~ 188 (788)
++++|..
T Consensus 400 ~~~~a~~ 406 (457)
T 1kt0_A 400 EHNERDR 406 (457)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-11 Score=111.55 Aligned_cols=109 Identities=16% Similarity=0.165 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003891 198 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 274 (788)
Q Consensus 198 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~ 274 (788)
|.....++.+|..+...|++++|+.+|+++++..|++ ..++..+|.++...|++++|+..++++++.+|++..+++.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 3344444444444444444444444444444444443 4444444555555555555555555555555544445555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChhhH
Q 003891 275 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 306 (788)
Q Consensus 275 la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~ 306 (788)
+|.++..+|++++|+.+|+++++++|++..++
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 136 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQ 136 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 55555555555555555555555555444443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.32 E-value=7.3e-11 Score=104.92 Aligned_cols=115 Identities=37% Similarity=0.573 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 103 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~ 103 (788)
+..++.+|..+...|++++|+..|+++++..|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 34578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 003891 104 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 138 (788)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~ 138 (788)
..|++++|+.+++++++..|++...+..++.++..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 99999999999999999999998877777666544
|
| >1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-11 Score=139.21 Aligned_cols=168 Identities=13% Similarity=-0.031 Sum_probs=131.7
Q ss_pred CeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEE-EcCCcCCcHHHHH
Q 003891 526 FITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVD-LLPLILLNHDHMQ 602 (788)
Q Consensus 526 ~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~-~~~~~~~~~~~~~ 602 (788)
.+++++++++ .|..+.++++|.++.+ ++.+|+++|.+ .+..++.+++..+++| ++|+ |.|. + .++...
T Consensus 291 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g--~~~~~~~l~~~~~~~~---~~v~~~~g~-~-~~~~~~ 361 (485)
T 1rzu_A 291 SPLFCVISRLTWQKGIDLMAEAVDEIVS--LGGRLVVLGAG--DVALEGALLAAASRHH---GRVGVAIGY-N-EPLSHL 361 (485)
T ss_dssp SCEEEEESCBSTTTTHHHHHTTHHHHHH--TTCEEEEEECB--CHHHHHHHHHHHHHTT---TTEEEEESC-C-HHHHHH
T ss_pred CeEEEEEccCccccCHHHHHHHHHHHHh--cCceEEEEeCC--chHHHHHHHHHHHhCC---CcEEEecCC-C-HHHHHH
Confidence 5578888876 8999999999999876 58999999976 2346788888888875 6887 7777 3 455568
Q ss_pred hcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchh-HHHhhhC---------Cccccc--CCHHHHHHHH
Q 003891 603 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV-SLLTKVG---------LKHLIA--KNEDEYVQLA 669 (788)
Q Consensus 603 ~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~-~~l~~~g---------l~~~ia--~~~~~y~~~a 669 (788)
.|+.+|+++-|+.+ +.|.+.+|||++|+|||+ +++++ .=+..-| ..+++. .|.+++++..
T Consensus 362 ~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~-------s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i 434 (485)
T 1rzu_A 362 MQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVV-------ARTGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAI 434 (485)
T ss_dssp HHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEE-------ESSHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHH
T ss_pred HHhcCCEEEECcccCCCCHHHHHHHHCCCCEEE-------eCCCChhheecccccccccccCCcceEeCCCCHHHHHHHH
Confidence 89999999999977 779999999999999998 44432 1111112 344443 3899999999
Q ss_pred HHHh---cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 003891 670 LQLA---SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 714 (788)
Q Consensus 670 ~~l~---~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 714 (788)
.++. +|++.+++++++.++ ..|+++.+++++++.|+++..
T Consensus 435 ~~ll~~~~~~~~~~~~~~~~~~-----~~fs~~~~~~~~~~~y~~~~~ 477 (485)
T 1rzu_A 435 RRTVRYYHDPKLWTQMQKLGMK-----SDVSWEKSAGLYAALYSQLIS 477 (485)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHT-----CCCBHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHH-----HhCChHHHHHHHHHHHHHhhC
Confidence 9998 899999998887752 459999999999999987643
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.32 E-value=3.7e-13 Score=151.32 Aligned_cols=137 Identities=18% Similarity=0.201 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 248 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 248 (788)
.+..+|..+...|++++|++.|+++++.+|++..++.++|.++..+|++++|+.+|+++++++|+++.+++++|.+|..+
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34455666677777777777777777777777777788888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhhCCCChhh
Q 003891 249 GKMDAAAEMIEKAIAANPTYAEAYNNLGVL--YRDAGSISLAIDAYE-----------QCLKIDPDSRNA 305 (788)
Q Consensus 249 g~~~eA~~~l~kal~~~p~~~~~~~~la~~--~~~~g~~~eA~~~~~-----------~al~l~p~~~~a 305 (788)
|++++|++.|+++++++|++..++..++.+ +..+|++++|++.++ ++++++|+...+
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~ 157 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGP 157 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccccc
Confidence 888888888888888888887778777777 777788888888888 777777776444
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.31 E-value=9.7e-12 Score=108.56 Aligned_cols=107 Identities=14% Similarity=0.085 Sum_probs=91.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 003891 197 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT--YAEAYNN 274 (788)
Q Consensus 197 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~--~~~~~~~ 274 (788)
+|++..++..+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+.+++++++..|+ +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 56677778888888888888888888888888888888888888888888888888888888888888888 8888888
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHhhCCCCh
Q 003891 275 LGVLYRDA-GSISLAIDAYEQCLKIDPDSR 303 (788)
Q Consensus 275 la~~~~~~-g~~~eA~~~~~~al~l~p~~~ 303 (788)
+|.++... |++++|+++++++++..|++.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88888888 888888888888888888753
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.31 E-value=3.2e-10 Score=131.46 Aligned_cols=246 Identities=8% Similarity=0.004 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 003891 41 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL-GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 119 (788)
Q Consensus 41 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 119 (788)
+.....|++++...|.++..|+..+..+...|+.++|. ..|++++...|.+...|..++.+....|++++|.+.|++++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44678899999999999999999999999999999997 99999999999999999999999999999999999999998
Q ss_pred hhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CC
Q 003891 120 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-NP 198 (788)
Q Consensus 120 ~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p 198 (788)
...+..... +-... ...++.+..+ ......+|...+.+..+.|+.+.|...|.++++. .+
T Consensus 406 ~~l~~~~~~------~~~~~-------p~~~~~~~~~------~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~ 466 (679)
T 4e6h_A 406 DRIHLDLAA------LMEDD-------PTNESAINQL------KSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL 466 (679)
T ss_dssp HHHHHHHHH------HHHHS-------TTCHHHHHHH------HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHhhh------hhhcc-------Ccchhhhhhh------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Confidence 753211000 00000 0000111111 1122345666677777777888888888888876 44
Q ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHH
Q 003891 199 HCAEACNNLGVIYKDRD-NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP---TYAEAYNN 274 (788)
Q Consensus 199 ~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p---~~~~~~~~ 274 (788)
....+|...+.+....+ +++.|.++|+++++..|+++..+..++......|+.+.|..+|++++...| ....+|..
T Consensus 467 ~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~ 546 (679)
T 4e6h_A 467 VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQK 546 (679)
T ss_dssp SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 44566766676666654 488888888888888888888888888888888888888888888888877 34577888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChhh
Q 003891 275 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 305 (788)
Q Consensus 275 la~~~~~~g~~~eA~~~~~~al~l~p~~~~a 305 (788)
........|+.+.+.+.++++.+..|++...
T Consensus 547 ~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 547 VIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 8888888899999999999999999987543
|
| >1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.8e-11 Score=129.11 Aligned_cols=317 Identities=14% Similarity=0.016 Sum_probs=181.0
Q ss_pred eeEeeccCCcccChhHHhhhhhhcccCCCceEEEEEeccccCChhhHHHHHHHhhhCCeEEEccCC--------------
Q 003891 355 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGI-------------- 420 (788)
Q Consensus 355 lriGyvS~df~~H~v~~~~~~~l~~~dr~~fev~~Y~~~~~~D~~t~~~r~~~~~~~~~~~~~~~~-------------- 420 (788)
.||.+++.....|-. ....+...+.+.+++|.+++...... ...+ ...+-.+..+...
T Consensus 7 mkIl~~~~~~gG~~~--~~~~la~~L~~~G~~V~v~~~~~~~~--~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~ 78 (364)
T 1f0k_A 7 KRLMVMAGGTGGHVF--PGLAVAHHLMAQGWQVRWLGTADRME--ADLV----PKHGIEIDFIRISGLRGKGIKALIAAP 78 (364)
T ss_dssp CEEEEECCSSHHHHH--HHHHHHHHHHTTTCEEEEEECTTSTH--HHHG----GGGTCEEEECCCCCCTTCCHHHHHTCH
T ss_pred cEEEEEeCCCccchh--HHHHHHHHHHHcCCEEEEEecCCcch--hhhc----cccCCceEEecCCccCcCccHHHHHHH
Confidence 578888765544432 22344455555678999887643211 1111 1111123332210
Q ss_pred -----CHHHHHHHHHhCCCcEEEeCCCCCCCCccccccc--CCCCeEEecccCCCCCC------CCCccEEEecCCCCCc
Q 003891 421 -----DEKKVAAMVREDKIDILVELTGHTANNKLGMMAC--QPAPVQVTWIGYPNTTG------LPTIDYRITDSLADPP 487 (788)
Q Consensus 421 -----~~~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~--r~Apvq~~~~g~~~ttg------~~~~Dy~i~d~~~~p~ 487 (788)
....+.+.|++.++||++-..+.. +-...++. .-.|+=++..+.. .| ....|.+++.. +.
T Consensus 79 ~~~~~~~~~l~~~l~~~~pDvv~~~~~~~--~~~~~~~~~~~~~p~v~~~~~~~--~~~~~~~~~~~~d~v~~~~---~~ 151 (364)
T 1f0k_A 79 LRIFNAWRQARAIMKAYKPDVVLGMGGYV--SGPGGLAAWSLGIPVVLHEQNGI--AGLTNKWLAKIATKVMQAF---PG 151 (364)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEECSSTT--HHHHHHHHHHTTCCEEEEECSSS--CCHHHHHHTTTCSEEEESS---TT
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCCcC--chHHHHHHHHcCCCEEEEecCCC--CcHHHHHHHHhCCEEEecC---hh
Confidence 123467778888999997643321 11122222 2245544433321 12 23467766531 11
Q ss_pred CccCCCccceEEcCCCcc--ccCCCCCCCCCCCCCCCCC-CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcE-EEEe
Q 003891 488 ETKQKHVEELIRLPECFL--CYTPSPEAGPVCPTPALTN-GFITFGSFNNL--AKITPKVLQVWARILCAVPNSR-LVVK 561 (788)
Q Consensus 488 ~~~~~~~e~l~~lp~~~~--~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~-l~l~ 561 (788)
. +. ++..+|+..- .|.+. ..+...+++. ..+++.+.++. .|..+.+++++.++.. +.+ ++++
T Consensus 152 -~---~~-~~~~i~n~v~~~~~~~~----~~~~~~~~~~~~~~il~~~g~~~~~k~~~~li~a~~~l~~---~~~~l~i~ 219 (364)
T 1f0k_A 152 -A---FP-NAEVVGNPVRTDVLALP----LPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGD---SVTIWHQS 219 (364)
T ss_dssp -S---SS-SCEECCCCCCHHHHTSC----CHHHHHTTCCSSEEEEEECTTTCCHHHHHHHHHHHHHHGG---GEEEEEEC
T ss_pred -h---cC-CceEeCCccchhhcccc----hhhhhcccCCCCcEEEEEcCchHhHHHHHHHHHHHHHhcC---CcEEEEEc
Confidence 1 22 3334443210 01110 0001112333 34455555555 5777777788887754 566 5666
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccC
Q 003891 562 CKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHA 641 (788)
Q Consensus 562 ~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~ 641 (788)
|.+ + .+.+++.+++.|++ +|.|.|.+. +....|+.+|+++-|+ |++|++|||++|+|||+.+.....
T Consensus 220 G~~----~-~~~l~~~~~~~~~~--~v~~~g~~~---~~~~~~~~ad~~v~~s---g~~~~~EAma~G~Pvi~~~~~g~~ 286 (364)
T 1f0k_A 220 GKG----S-QQSVEQAYAEAGQP--QHKVTEFID---DMAAAYAWADVVVCRS---GALTVSEIAAAGLPALFVPFQHKD 286 (364)
T ss_dssp CTT----C-HHHHHHHHHHTTCT--TSEEESCCS---CHHHHHHHCSEEEECC---CHHHHHHHHHHTCCEEECCCCCTT
T ss_pred CCc----h-HHHHHHHHhhcCCC--ceEEecchh---hHHHHHHhCCEEEECC---chHHHHHHHHhCCCEEEeeCCCCc
Confidence 665 2 36788888888884 799999973 5667777899999885 599999999999999986532211
Q ss_pred c--cchhHHHhhhCCcccccC-C--HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 003891 642 H--NVGVSLLTKVGLKHLIAK-N--EDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRY 716 (788)
Q Consensus 642 ~--r~~~~~l~~~gl~~~ia~-~--~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 716 (788)
. ...+..+...|..-++.. | .+++.+...++ |++.+++++++.++.. ..|+++.+++.+++.|+++-..|
T Consensus 287 ~~q~~~~~~~~~~g~g~~~~~~d~~~~~la~~i~~l--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~y~~~~~~~ 361 (364)
T 1f0k_A 287 RQQYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGW--SRETLLTMAERARAAS---IPDATERVANEVSRVARALEHHH 361 (364)
T ss_dssp CHHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHTC--CHHHHHHHHHHHHHTC---CTTHHHHHHHHHHHHHTTC----
T ss_pred hhHHHHHHHHHhCCcEEEeccccCCHHHHHHHHHhc--CHHHHHHHHHHHHHhh---ccCHHHHHHHHHHHHHHHHHhhc
Confidence 1 011334555566333332 3 67887777777 9999999999988663 35899999999999998876554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.31 E-value=4e-12 Score=142.87 Aligned_cols=136 Identities=15% Similarity=0.112 Sum_probs=123.4
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003891 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 212 (788)
Q Consensus 133 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 212 (788)
+..+..+|..+...|++++|+++|+++++.+|++..++.++|.++..+|++++|++.++++++.+|++..+++++|.+|.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhCCCC
Q 003891 213 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVV--YTVQGKMDAAAEMIE-----------KAIAANPTY 268 (788)
Q Consensus 213 ~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~eA~~~l~-----------kal~~~p~~ 268 (788)
.+|++++|+++|+++++.+|++..++..++.+ +..+|++++|++.++ +++.+.|+.
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 99999999999999999999999999999988 889999999999999 777777665
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.6e-11 Score=132.21 Aligned_cols=170 Identities=9% Similarity=0.071 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCC------CCH
Q 003891 94 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW------HYA 167 (788)
Q Consensus 94 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~ 167 (788)
++..+|.+|...|++++|++++++++...+...... ....+...++.++...|++++|+.++++++...+ ...
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK-TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKH 135 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH-HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 467888999999999999999998888766543322 2234566678888888999999999999887532 235
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CC----
Q 003891 168 DAMYNLGVAYGEMLKFDMAIVFYELAFHF------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---NF---- 234 (788)
Q Consensus 168 ~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p---~~---- 234 (788)
.++..+|.+|...|++++|+..+++++.. .+....++..++.+|...|++++|..++++++...+ ..
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 215 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTV 215 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHH
Confidence 67889999999999999999999998865 233467889999999999999999999999987632 22
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003891 235 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 264 (788)
Q Consensus 235 ~~~~~~la~~~~~~g~~~eA~~~l~kal~~ 264 (788)
...+..+|.++...+++++|..+|.+++..
T Consensus 216 ~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 216 AELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 346777888888999999999999998875
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=5e-11 Score=110.01 Aligned_cols=120 Identities=13% Similarity=0.073 Sum_probs=113.7
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 003891 162 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 238 (788)
Q Consensus 162 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 238 (788)
..+.....++.+|..+...|++++|+..|+++++.+|++ ..++.++|.++...|++++|+.+++++++.+|++..++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 457788999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 239 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 281 (788)
Q Consensus 239 ~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~ 281 (788)
+.+|.++...|++++|+.+|+++++++|++..++..++.+...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999888877543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.4e-12 Score=136.81 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=87.4
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 003891 131 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 210 (788)
Q Consensus 131 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 210 (788)
..+..+..+|..+...|++++|+.+|++++...|++. .+...++++++...+. ..+++++|.+
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~---------~~~~~nla~~ 239 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK---------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH---------THHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH---------HHHHHHHHHH
Confidence 3455566666666666777777777777666666533 1122333333333221 1488999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHH
Q 003891 211 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL-YRDAGSISLAI 289 (788)
Q Consensus 211 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~-~~~~g~~~eA~ 289 (788)
+..+|++++|+.+|+++++++|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.+ ....+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988 44567788889
Q ss_pred HHHHHHHhhCCCChh
Q 003891 290 DAYEQCLKIDPDSRN 304 (788)
Q Consensus 290 ~~~~~al~l~p~~~~ 304 (788)
..|++++...|++..
T Consensus 320 ~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 320 EMYKGIFKGKDEGGA 334 (338)
T ss_dssp ---------------
T ss_pred HHHHHhhCCCCCCCC
Confidence 999999999988754
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.1e-11 Score=106.95 Aligned_cols=102 Identities=22% Similarity=0.215 Sum_probs=51.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 003891 204 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFS---QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGV 277 (788)
Q Consensus 204 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~---~~~~~~la~ 277 (788)
++.+|.++...|++++|+..|+++++..|++. .+++.+|.++...|++++|+..|+++++.+|++ +.+++.+|.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34444444445555555555555554444444 444555555555555555555555555555544 444555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChhh
Q 003891 278 LYRDAGSISLAIDAYEQCLKIDPDSRNA 305 (788)
Q Consensus 278 ~~~~~g~~~eA~~~~~~al~l~p~~~~a 305 (788)
++..+|++++|+..|+++++..|++..+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 5555555555555555555555544443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.3e-11 Score=106.85 Aligned_cols=105 Identities=17% Similarity=0.205 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA---PAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMG 99 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~---~~~~~~la 99 (788)
.++.+|..+...|++++|+..|+++++.+|++. .+++.+|.++...|++++|+..|+++++.+|++ +.+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 467889999999999999999999999999988 899999999999999999999999999999999 89999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCcHHHHH
Q 003891 100 VIYKNRGDLESAIACYERCLAVSPNFEIAKN 130 (788)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 130 (788)
.++...|++++|+..|+++++..|++.....
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 9999999999999999999999999875543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.26 E-value=8e-11 Score=130.25 Aligned_cols=204 Identities=13% Similarity=0.059 Sum_probs=159.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHH----------HHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCC
Q 003891 95 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEI----------AKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNW 164 (788)
Q Consensus 95 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----------~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p 164 (788)
....|..+...|++++|++.|.++++..++... .......++..+|.+|...|++++|++++.++++..+
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666666554321 1222344567788888889999999999999998755
Q ss_pred CCH------HHHHHHHHHHHHcCChHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Q 003891 165 HYA------DAMYNLGVAYGEMLKFDMAIVFYELAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-- 230 (788)
Q Consensus 165 ~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-- 230 (788)
... .+...++.++...|++++|+.++++++... +....++.++|.++...|++++|+.++++++..
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 432 245678888888999999999999998752 233678999999999999999999999999876
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 231 ----KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP---TY----AEAYNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 231 ----~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p---~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
.+...+++..++.+|...|++++|..++++++...+ .. ...+..+|.++...|++++|..+|.++++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 233466899999999999999999999999988732 22 356778899999999999999999999875
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.26 E-value=3.8e-11 Score=107.92 Aligned_cols=112 Identities=17% Similarity=0.235 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHHH
Q 003891 168 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-------SQSLNN 240 (788)
Q Consensus 168 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-------~~~~~~ 240 (788)
..+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+++++++..|.+ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555555555555555555554443 445555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 241 LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 280 (788)
Q Consensus 241 la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~ 280 (788)
+|.++...|++++|+++|+++++..| ++.....++.+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 55555555555555555555555555 3444444444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.4e-11 Score=103.73 Aligned_cols=106 Identities=16% Similarity=0.152 Sum_probs=99.9
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Q 003891 13 DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM-- 90 (788)
Q Consensus 13 ~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~-- 90 (788)
+|++... ++.+|.++...|++++|+..|+++++.+|.+..+++.+|.++...|++++|+.+++++++.+|.
T Consensus 2 ~p~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~ 74 (112)
T 2kck_A 2 VDQNPEE-------YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEY 74 (112)
T ss_dssp CCSSTTG-------GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTT
T ss_pred CCCcHHH-------HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccc
Confidence 5777666 6777888889999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhhCCCc
Q 003891 91 YAEAYCNMGVIYKNR-GDLESAIACYERCLAVSPNF 125 (788)
Q Consensus 91 ~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~ 125 (788)
+..++..+|.++... |++++|++++++++...|..
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 75 NKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp CHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 999999999999999 99999999999999998875
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.25 E-value=5.4e-11 Score=128.95 Aligned_cols=123 Identities=19% Similarity=0.192 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh----------------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFH----------------FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 232 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 232 (788)
.+..+|..+...|++++|+..|+++++ .+|.+..++.++|.++.++|++++|+.+++++++++|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 345555566666666666666666655 6677788888999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003891 233 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 291 (788)
Q Consensus 233 ~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 291 (788)
++..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..+++++++.+.
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888888899888888888777653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.9e-11 Score=130.95 Aligned_cols=102 Identities=13% Similarity=0.122 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HH
Q 003891 168 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV-YT 246 (788)
Q Consensus 168 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~-~~ 246 (788)
.+++++|.+|..+|++++|+..|+++++.+|++..+++++|.+|..+|++++|+.+|+++++++|++..++..++.+ ..
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999998 44
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH
Q 003891 247 VQGKMDAAAEMIEKAIAANPTYA 269 (788)
Q Consensus 247 ~~g~~~eA~~~l~kal~~~p~~~ 269 (788)
..+..+++...|++++...|+++
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCCC
Confidence 56778899999999999988765
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.22 E-value=2.5e-10 Score=102.49 Aligned_cols=115 Identities=23% Similarity=0.244 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-------AEAYC 96 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~-------~~~~~ 96 (788)
+..++.+|..+...|++++|+..|+++++.+|.+..+++.+|.++...|++++|+.+++++++..|.+ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 55688999999999999999999999999999999999999999999999999999999999998876 89999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 003891 97 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 139 (788)
Q Consensus 97 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l 139 (788)
.+|.++...|++++|+++|+++++..|+ ......++.+...+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHH
Confidence 9999999999999999999999999984 55555555554443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=2.5e-11 Score=112.32 Aligned_cols=91 Identities=22% Similarity=0.222 Sum_probs=85.6
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 003891 36 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY----------DTALGCYEKAALERPMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 36 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~kal~~~p~~~~~~~~la~~~~~~ 105 (788)
+.+.+++|++.++++++++|+++++|+++|.++...+++ ++|+..|+++++++|++..+|+++|.+|..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 346789999999999999999999999999999999875 5999999999999999999999999999988
Q ss_pred C-----------CHHHHHHHHHHHHhhCCCcH
Q 003891 106 G-----------DLESAIACYERCLAVSPNFE 126 (788)
Q Consensus 106 g-----------~~~~A~~~~~~al~~~p~~~ 126 (788)
| ++++|+++|++|++++|++.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 5 89999999999999999976
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=3e-11 Score=111.76 Aligned_cols=94 Identities=18% Similarity=0.215 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--
Q 003891 215 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK----------MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA-- 282 (788)
Q Consensus 215 g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~-- 282 (788)
+.+++|++.++++++++|+++++++++|.++...++ +++|+..|+++++++|++.++++++|.+|..+
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 344555555555555555555555555555554443 45777777777777777777777777777766
Q ss_pred ---------CCHHHHHHHHHHHHhhCCCChhhHHh
Q 003891 283 ---------GSISLAIDAYEQCLKIDPDSRNAGQN 308 (788)
Q Consensus 283 ---------g~~~eA~~~~~~al~l~p~~~~a~~~ 308 (788)
|++++|+++|++|++++|++...+..
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 48999999999999999988765544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-10 Score=125.35 Aligned_cols=125 Identities=14% Similarity=0.190 Sum_probs=114.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 16 YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK----------------IDPHYAPAYYNLGVVYSELMQYDTALG 79 (788)
Q Consensus 16 ~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~lg~~~~~~g~~~~A~~ 79 (788)
+.+.....+..+..+|..++..|++++|+..|+++++ .+|.+..+++++|.+|..+|++++|+.
T Consensus 215 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 294 (370)
T 1ihg_A 215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD 294 (370)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 4555567788899999999999999999999999998 777888999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 003891 80 CYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 140 (788)
Q Consensus 80 ~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg 140 (788)
+++++++.+|++..+++.+|.+|..+|++++|+..|+++++++|++...+..++.++..++
T Consensus 295 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 295 SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 355 (370)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887777776666554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.3e-11 Score=110.13 Aligned_cols=133 Identities=26% Similarity=0.269 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HH
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQ 236 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~ 236 (788)
++..+|.++...|++++|+..++++++..+.. ..++..+|.++...|++++|+.+++++++..+.. ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 34444444444555555555554444432211 2355566666666666666666666666553321 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 237 SLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 237 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
++.++|.++...|++++|+.+++++++..+ ....++..+|.++...|++++|++++++++++...
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777766522 11456777888888888888888888888776443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.5e-11 Score=110.04 Aligned_cols=141 Identities=26% Similarity=0.310 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q 003891 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDTALGCYEKAALERPMY---- 91 (788)
Q Consensus 22 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~---- 91 (788)
..+.++..+|..+...|++++|+..++++++..+.. ..++..+|.++...|++++|+.+++++++..+..
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 456778888888888999999999999888875432 2477888888888888888888888887764332
Q ss_pred --HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhC
Q 003891 92 --AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 163 (788)
Q Consensus 92 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~ 163 (788)
..++..+|.++...|++++|+.++++++++.+.... ....+.++..+|.++...|++++|+.++++++++.
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD-RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc-hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 557778888888888888888888888776432211 12234455556666666666666666666666543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.1e-11 Score=106.63 Aligned_cols=93 Identities=12% Similarity=0.191 Sum_probs=62.6
Q ss_pred cCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 214 RDNLDKAVECYQMALSI---KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 290 (788)
Q Consensus 214 ~g~~~eA~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~ 290 (788)
+|++++|+.+|+++++. +|++..++.++|.+|..+|++++|+.+|+++++.+|+++.+++.+|.++..+|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46666777777777766 366666777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhhCCCChhhH
Q 003891 291 AYEQCLKIDPDSRNAG 306 (788)
Q Consensus 291 ~~~~al~l~p~~~~a~ 306 (788)
.++++++..|+++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 7777777777666543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.18 E-value=1.6e-08 Score=113.66 Aligned_cols=253 Identities=8% Similarity=-0.084 Sum_probs=138.6
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH----HCCCHH
Q 003891 38 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ-YDTALGCYEKAALE---RPMYAEAYCNMGVIYK----NRGDLE 109 (788)
Q Consensus 38 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~kal~~---~p~~~~~~~~la~~~~----~~g~~~ 109 (788)
|+++.+..+|++++...| +.+.|..........++ .+.....|+.++.. ++.+...|......+. .+++.+
T Consensus 28 ~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~ 106 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIE 106 (493)
T ss_dssp TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHH
T ss_pred CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHH
Confidence 566666666666666666 55566555555554442 34455556666553 4555566665555443 234556
Q ss_pred HHHHHHHHHHhhCCCcHHHH-HHHHH-----------------------------------------HHHHhhhhhhhcC
Q 003891 110 SAIACYERCLAVSPNFEIAK-NNMAI-----------------------------------------ALTDLGTKVKLEG 147 (788)
Q Consensus 110 ~A~~~~~~al~~~p~~~~~~-~~la~-----------------------------------------~l~~lg~~~~~~g 147 (788)
.+...|++++..-..+...+ ..... .+..... ...+
T Consensus 107 ~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~--~E~~ 184 (493)
T 2uy1_A 107 KIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLID--LEME 184 (493)
T ss_dssp HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHH--HHHT
T ss_pred HHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHH--HHhc
Confidence 66666666666322211110 00000 0000000 0111
Q ss_pred C---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH--------
Q 003891 148 D---------INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI-------- 210 (788)
Q Consensus 148 ~---------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-------- 210 (788)
+ .+.....|++++...|..+..|...+..+...|+.++|...|++++.. |.+...+...+..
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~ 263 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYG 263 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHH
T ss_pred CCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHH
Confidence 1 345677899999999999999999999999999999999999999988 8875555444332
Q ss_pred --------------------------------HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHH
Q 003891 211 --------------------------------YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG-KMDAAAEM 257 (788)
Q Consensus 211 --------------------------------~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~ 257 (788)
..+.++.+.|...|+++ ...+.....+...|.+....+ +.+.|...
T Consensus 264 ~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~i 342 (493)
T 2uy1_A 264 DLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNI 342 (493)
T ss_dssp HHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHH
Confidence 11233445555555555 222223334444444433333 35555555
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 258 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 295 (788)
Q Consensus 258 l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 295 (788)
|+.+++..|+.+..+...+......|+.+.|...|+++
T Consensus 343 fe~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 343 FSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555555555555555555555555554
|
| >2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=4e-11 Score=130.19 Aligned_cols=245 Identities=16% Similarity=0.102 Sum_probs=149.4
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCCCCCcccccccCCCCeEEecccCCCC-----CCCCCccEEEecCCCCCcCccC-CCcc
Q 003891 422 EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNT-----TGLPTIDYRITDSLADPPETKQ-KHVE 495 (788)
Q Consensus 422 ~~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~Apvq~~~~g~~~t-----tg~~~~Dy~i~d~~~~p~~~~~-~~~e 495 (788)
...+.+.|+..++||++-.....-.+-+. .+.+ |+=+. .+.... .-+...|.+++-.-.+-..... ...
T Consensus 100 ~~~l~~~l~~~~pDiv~~~~~~~~~~~~~-~~~~--p~~~~-~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~l~~~g~~- 174 (374)
T 2xci_A 100 PFSVKRFEELSKPKALIVVEREFWPSLII-FTKV--PKILV-NAYAKGSLIEKILSKKFDLIIMRTQEDVEKFKTFGAK- 174 (374)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCCCHHHHH-HCCS--CEEEE-EECCCCCHHHHHHHTTCSEEEESCHHHHHHHHTTTCC-
T ss_pred HHHHHHHHHHhCCCEEEEECccCcHHHHH-HHhC--CEEEE-EeecCchHHHHHHHHhCCEEEECCHHHHHHHHHcCCC-
Confidence 46788899999999998432221111111 1223 64322 121110 0024567766532111000111 122
Q ss_pred ceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHH-HHH
Q 003891 496 ELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR-HRF 574 (788)
Q Consensus 496 ~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~-~~l 574 (788)
++..+|+.. |.+.+.. .. .+..-.+++++ +..|..+.++++|.++.+..|+.+|+|+|.+ +.+ +.+
T Consensus 175 ki~vi~n~~--f~~~~~~---~~--~l~~~vi~~~~--~~~k~~~~ll~A~~~l~~~~p~~~lvivG~g----~~~~~~l 241 (374)
T 2xci_A 175 RVFSCGNLK--FICQKGK---GI--KLKGEFIVAGS--IHTGEVEIILKAFKEIKKTYSSLKLILVPRH----IENAKIF 241 (374)
T ss_dssp SEEECCCGG--GCCCCCS---CC--CCSSCEEEEEE--ECGGGHHHHHHHHHHHHTTCTTCEEEEEESS----GGGHHHH
T ss_pred eEEEcCCCc--cCCCcCh---hh--hhcCCEEEEEe--CCCchHHHHHHHHHHHHhhCCCcEEEEECCC----HHHHHHH
Confidence 677777642 3332211 11 12221233443 5678889999999999999999999999876 444 578
Q ss_pred HHHHHHcCCCC-------CcEEEcCCcCCcHHHHHhcccccEeecCCCC--CCchhHHHHhhhCCceeecCC-CccCccc
Q 003891 575 LSTLEQLGLES-------LRVDLLPLILLNHDHMQAYSLMDISLDTFPY--AGTTTTCESLYMGVPCVTMAG-SVHAHNV 644 (788)
Q Consensus 575 ~~~~~~~gi~~-------~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~--~g~~t~~eal~~GvPvvt~~g-~~~~~r~ 644 (788)
++.+++.|+.. ++|.|.+.. .+...+|+.+||++-++.+ +||.+.+|||++|+|||+-+. ..+..
T Consensus 242 ~~~~~~~gl~~~~~~~~~~~v~~~~~~---~dl~~~y~~aDv~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~~~e-- 316 (374)
T 2xci_A 242 EKKARDFGFKTSFFENLEGDVILVDRF---GILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVND-- 316 (374)
T ss_dssp HHHHHHTTCCEEETTCCCSSEEECCSS---SCHHHHGGGEEEEEECSSSSSSCCCCCHHHHTTTCCEEECSCCTTSHH--
T ss_pred HHHHHHCCCceEEecCCCCcEEEECCH---HHHHHHHHhCCEEEECCcccCCCCcCHHHHHHhCCCEEECCCccChHH--
Confidence 88899999862 467887753 5778899999996544333 467999999999999996211 11111
Q ss_pred hhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 003891 645 GVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMS 691 (788)
Q Consensus 645 ~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~ 691 (788)
....+...|.- +...|.+++.+...+|.+| +.+++|+++.|+.+.
T Consensus 317 ~~~~~~~~G~l-~~~~d~~~La~ai~~ll~d-~~r~~mg~~ar~~~~ 361 (374)
T 2xci_A 317 LKEFLEKEGAG-FEVKNETELVTKLTELLSV-KKEIKVEEKSREIKG 361 (374)
T ss_dssp HHHHHHHTTCE-EECCSHHHHHHHHHHHHHS-CCCCCHHHHHHHHHH
T ss_pred HHHHHHHCCCE-EEeCCHHHHHHHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 01111122321 2347999999999999999 999999999887764
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.6e-11 Score=107.01 Aligned_cols=93 Identities=19% Similarity=0.179 Sum_probs=71.1
Q ss_pred cCChHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 180 MLKFDMAIVFYELAFHF---NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 256 (788)
Q Consensus 180 ~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 256 (788)
+|++++|+..|+++++. +|++..++.++|.++..+|++++|+.+|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 56777788888888877 477777888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhCCCCHHHH
Q 003891 257 MIEKAIAANPTYAEAY 272 (788)
Q Consensus 257 ~l~kal~~~p~~~~~~ 272 (788)
.+++++...|+++.+.
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 8888888888776654
|
| >3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=5.3e-11 Score=135.05 Aligned_cols=162 Identities=10% Similarity=0.059 Sum_probs=117.9
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 003891 524 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 601 (788)
Q Consensus 524 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~ 601 (788)
.+.++|++++|+ .|..+.+++++.++++. +.+|+|+|.| .......++...... . +++.|.+... .++..
T Consensus 325 ~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~--~~~l~l~G~G--~~~~~~~~~~~~~~~--~-~~v~~~~~~~-~~~~~ 396 (536)
T 3vue_A 325 RKIPLIAFIGRLEEQKGPDVMAAAIPELMQE--DVQIVLLGTG--KKKFEKLLKSMEEKY--P-GKVRAVVKFN-APLAH 396 (536)
T ss_dssp TTSCEEEEECCBSGGGCHHHHHHHHHHHTTS--SCEEEEECCB--CHHHHHHHHHHHHHS--T-TTEEEECSCC-HHHHH
T ss_pred CCCcEEEEEeeccccCChHHHHHHHHHhHhh--CCeEEEEecc--CchHHHHHHHHHhhc--C-CceEEEEecc-HHHHH
Confidence 466789999987 89999999999999874 5678887765 234445555544443 3 7898888876 56666
Q ss_pred HhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC--------------------
Q 003891 602 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK-------------------- 660 (788)
Q Consensus 602 ~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~-------------------- 660 (788)
..|+.+|+||-|+-+ +.|.+.+|||++|+|||+ +++| |++|.|.+
T Consensus 397 ~~~~~aD~~v~PS~~E~fgl~~lEAma~G~PvI~-------s~~g-------G~~e~V~dg~~G~~~~~~~~~g~l~~~~ 462 (536)
T 3vue_A 397 LIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCAC-------ASTG-------GLVDTVIEGKTGFHMGRLSVDCKVVEPS 462 (536)
T ss_dssp HHHHHCSEEEECCSCCSSCSHHHHHHHTTCCEEE-------CSCT-------HHHHHCCBTTTEEECCCCCSCTTCCCHH
T ss_pred HHHHhhheeecccccCCCCHHHHHHHHcCCCEEE-------cCCC-------CchheeeCCCCccccccCCCceeEECCC
Confidence 789999999999987 779999999999999997 7776 55554422
Q ss_pred CHHHHHHHH---HHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 003891 661 NEDEYVQLA---LQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 713 (788)
Q Consensus 661 ~~~~y~~~a---~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 713 (788)
|.+++.+.. +.+..++.++ ++++ ..|.+ -|++++.++++++.|+++.
T Consensus 463 d~~~la~ai~ral~~~~~~~~~-~~~~---~am~~--~fSW~~~A~~y~~ly~~L~ 512 (536)
T 3vue_A 463 DVKKVAATLKRAIKVVGTPAYE-EMVR---NCMNQ--DLSWKGPAKNWENVLLGLG 512 (536)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHH-HHHH---HHHHS--CCSSHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhcCcHHHH-HHHH---HHHHh--cCCHHHHHHHHHHHHHHhh
Confidence 455555443 4555666443 3332 33333 4999999999999999873
|
| >1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=9.3e-10 Score=122.68 Aligned_cols=175 Identities=14% Similarity=0.068 Sum_probs=128.3
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCCCC-HH----HHHHHHHHHHHc----CCC-CCcE
Q 003891 525 GFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCC-DS----VRHRFLSTLEQL----GLE-SLRV 588 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~l~~~~~~~-~~----~~~~l~~~~~~~----gi~-~~rv 588 (788)
+..++.+++|+ .|..+..++++.++++..|+ .+|+++|.+..+ .+ .++.+.+.+.+. |.. -..|
T Consensus 254 ~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vG~p~~~~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v 333 (482)
T 1uqt_A 254 NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPL 333 (482)
T ss_dssp TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSE
T ss_pred CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccccCcEEEEEEECCCccchHHHHHHHHHHHHHHHHHhhhcccCCCceE
Confidence 45667788887 89999999999999999986 678888865321 12 344454444332 332 1246
Q ss_pred EE-cCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCC-----ceeecCCCccCccchhHHHhhhCCccccc--
Q 003891 589 DL-LPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGV-----PCVTMAGSVHAHNVGVSLLTKVGLKHLIA-- 659 (788)
Q Consensus 589 ~~-~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~Gv-----Pvvt~~g~~~~~r~~~~~l~~~gl~~~ia-- 659 (788)
+| .+.++ .++...+|+.||||+-|+-+ +-|.+++|||+||+ |||+ |+.++ ....+. ..+++
T Consensus 334 ~~~~g~v~-~~el~~ly~~ADv~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~-------S~~~G-~~~~l~-~g~lv~p 403 (482)
T 1uqt_A 334 YYLNQHFD-RKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVL-------SQFAG-AANELT-SALIVNP 403 (482)
T ss_dssp EEECSCCC-HHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEE-------ETTBG-GGGTCT-TSEEECT
T ss_pred EEeCCCCC-HHHHHHHHHHccEEEECCCcccCCchHHHHHHhCCCCCCCCEEE-------ECCCC-CHHHhC-CeEEECC
Confidence 65 56666 78999999999999999987 77999999999998 7776 44321 111111 33443
Q ss_pred CCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 003891 660 KNEDEYVQLALQLASD-VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 712 (788)
Q Consensus 660 ~~~~~y~~~a~~l~~d-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 712 (788)
.|.+++.+...++.++ ++.++++.+++++++.+ ||...+++.+.+.|+++
T Consensus 404 ~d~~~lA~ai~~lL~~~~~~r~~~~~~~~~~v~~---~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 404 YDRDEVAAALDRALTMSLAERISRHAEMLDVIVK---NDINHWQECFISDLKQI 454 (482)
T ss_dssp TCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHhc
Confidence 4899999999999984 67788888888888754 79999999999999663
|
| >3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.6e-09 Score=115.51 Aligned_cols=166 Identities=14% Similarity=0.101 Sum_probs=117.4
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 003891 523 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 602 (788)
Q Consensus 523 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 602 (788)
+++.+++.++++..+.....+....+.+...+...+++.|++. .++.+. ++ +++|.|.|+++ +..
T Consensus 240 ~~~~~vlv~~G~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~----~~~~l~------~~-~~~v~~~~~~~----~~~ 304 (412)
T 3otg_A 240 TARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSL----DVSGLG------EV-PANVRLESWVP----QAA 304 (412)
T ss_dssp TTSCEEEEECTTTTCSCHHHHHHHHHHHHTSSSEEEEECCSSC----CCTTCC------CC-CTTEEEESCCC----HHH
T ss_pred CCCCEEEEEcCCCCcCcHHHHHHHHHHHHcCCCEEEEEECCCC----Chhhhc------cC-CCcEEEeCCCC----HHH
Confidence 5667788888888666667777667777766544444444431 111111 23 37999999973 445
Q ss_pred hcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC---CHHHHHHHHHHHhcCHHHH
Q 003891 603 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTAL 679 (788)
Q Consensus 603 ~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~~ 679 (788)
.+..||+|+.+ +|++|++|||++|+|||+.+.. ......+..+...|..-++.. |.++..+...+|.+|++.+
T Consensus 305 ~l~~ad~~v~~---~g~~t~~Ea~a~G~P~v~~p~~-~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~~~~ 380 (412)
T 3otg_A 305 LLPHVDLVVHH---GGSGTTLGALGAGVPQLSFPWA-GDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAEESYR 380 (412)
T ss_dssp HGGGCSEEEES---CCHHHHHHHHHHTCCEEECCCS-TTHHHHHHHHHHHTSEEECCGGGCCHHHHHHHHHHHHHCHHHH
T ss_pred HHhcCcEEEEC---CchHHHHHHHHhCCCEEecCCc-hhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhCHHHH
Confidence 66679999933 4568999999999999997643 112234566777777666654 8899999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 680 ANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 680 ~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
+++++..++.... ++.++.++.+|+.+.
T Consensus 381 ~~~~~~~~~~~~~---~~~~~~~~~~~~l~~ 408 (412)
T 3otg_A 381 AGARAVAAEIAAM---PGPDEVVRLLPGFAS 408 (412)
T ss_dssp HHHHHHHHHHHHS---CCHHHHHTTHHHHHC
T ss_pred HHHHHHHHHHhcC---CCHHHHHHHHHHHhc
Confidence 9998877765432 478899999988874
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.03 E-value=1.8e-07 Score=105.08 Aligned_cols=209 Identities=9% Similarity=-0.040 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHH
Q 003891 76 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 155 (788)
Q Consensus 76 ~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~ 155 (788)
.....|++++...|..+..|...+..+...|+.++|...|++++.. |.+...+...+... .+... ++.....
T Consensus 197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~~~------~~~l~~~ 268 (493)
T 2uy1_A 197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEEAV------YGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCTHH------HHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chhHH------HHHHHHH
Confidence 4556777777777777777887777777778888888888888877 77654433222110 11100 1111000
Q ss_pred HHHHH------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 003891 156 YKKAL------YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD-NLDKAVECYQMAL 228 (788)
Q Consensus 156 ~~~al------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al 228 (788)
+.... ...+....+|...+....+.++.+.|...|+++ ...+.....+...+.+....+ +.+.|...|++++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 00000 000011245666677777788899999999999 443345667777777766666 6999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003891 229 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 297 (788)
Q Consensus 229 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 297 (788)
+..|+.+..+...+......|+.+.|...|+++ +.....|......-...|+.+.+.+.++++++
T Consensus 348 ~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 348 LKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999998888898889999999999999998 35678888888888899999999999999885
|
| >1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=6.5e-10 Score=121.09 Aligned_cols=170 Identities=12% Similarity=0.058 Sum_probs=123.2
Q ss_pred CCCeEEEecCCCC---cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 003891 524 NGFITFGSFNNLA---KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 600 (788)
Q Consensus 524 ~~~~~f~~~~~~~---K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~ 600 (788)
++.+++++++++. |..+.++++|.++.++.|+.+|++.+++ .+..++.+++.+ +.. ++|.|+|.++ ..+.
T Consensus 204 ~~~~vl~~~gr~~~~~kg~~~li~a~~~l~~~~~~~~l~i~~g~--~~~~~~~l~~~~---~~~-~~v~~~g~~~-~~~~ 276 (384)
T 1vgv_A 204 DKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPVHL--NPNVREPVNRIL---GHV-KNVILIDPQE-YLPF 276 (384)
T ss_dssp TSEEEEEECCCBSSCCHHHHHHHHHHHHHHHHCTTEEEEEECCB--CHHHHHHHHHHH---TTC-TTEEEECCCC-HHHH
T ss_pred CCCEEEEEeCCccccchHHHHHHHHHHHHHhhCCCeEEEEEcCC--CHHHHHHHHHHh---hcC-CCEEEeCCCC-HHHH
Confidence 4556788888764 7779999999999999999998885332 123555555543 322 6899988876 5788
Q ss_pred HHhcccccEeecCCCCCCchhHHHHhhhCCceeecCC-CccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHH
Q 003891 601 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG-SVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTAL 679 (788)
Q Consensus 601 ~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g-~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~ 679 (788)
...|+.||+++-|+ |+ +++|||++|+|||+.+. .. ..-+...|..-++..|.+++.+...++.+|++.+
T Consensus 277 ~~~~~~ad~~v~~S---g~-~~lEA~a~G~PvI~~~~~~~------~~e~v~~g~g~lv~~d~~~la~~i~~ll~d~~~~ 346 (384)
T 1vgv_A 277 VWLMNHAWLILTDS---GG-IQEEAPSLGKPVLVMRDTTE------RPEAVTAGTVRLVGTDKQRIVEEVTRLLKDENEY 346 (384)
T ss_dssp HHHHHHCSEEEESS---ST-GGGTGGGGTCCEEEESSCCS------CHHHHHHTSEEEECSSHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHhCcEEEECC---cc-hHHHHHHcCCCEEEccCCCC------cchhhhCCceEEeCCCHHHHHHHHHHHHhChHHH
Confidence 89999999999877 44 48999999999998642 11 1112334633344359999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 003891 680 ANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 713 (788)
Q Consensus 680 ~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 713 (788)
++|+++.++. ..-|+++++++.+++.|.+.-
T Consensus 347 ~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~ 377 (384)
T 1vgv_A 347 QAMSRAHNPY---GDGQACSRILEALKNNRISLG 377 (384)
T ss_dssp HHHHSSCCTT---CCSCHHHHHHHHHHHTCCCC-
T ss_pred hhhhhccCCC---cCCCHHHHHHHHHHHHHHhhc
Confidence 9888766533 245788888888888776543
|
| >2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-10 Score=127.07 Aligned_cols=151 Identities=9% Similarity=0.002 Sum_probs=106.1
Q ss_pred CCcCCHHHHHHHHHHHhHcCC---cEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEee
Q 003891 535 LAKITPKVLQVWARILCAVPN---SRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISL 611 (788)
Q Consensus 535 ~~K~~~~~~~~~~~il~~~p~---~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~L 611 (788)
..|..+.+++++.++.+..|+ .+|+++|.+... .++|+. ++|.|+|.++ .++....|+.||||+
T Consensus 253 ~~Kg~~~li~A~~~l~~~~~~~~~~~l~ivG~~~~~-----------~~l~~~-~~v~f~G~~~-~~~l~~~~~~adv~v 319 (413)
T 2x0d_A 253 KRNAFTLIVEALKIFVQKYDRSNEWKIISVGEKHKD-----------IALGKG-IHLNSLGKLT-LEDYADLLKRSSIGI 319 (413)
T ss_dssp GGGCHHHHHHHHHHHHHHCTTGGGCEEEEEESCCCC-----------EEEETT-EEEEEEESCC-HHHHHHHHHHCCEEE
T ss_pred hccCHHHHHHHHHHHHHhCCCCCceEEEEEcCCchh-----------hhcCCc-CcEEEcCCCC-HHHHHHHHHhCCEEE
Confidence 468889999999999988886 799999976321 346776 8999999987 789999999999999
Q ss_pred cCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccc-c-cCCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 003891 612 DTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHL-I-AKNEDEYVQLALQLASDVTALANLRMSLRD 688 (788)
Q Consensus 612 d~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~-i-a~~~~~y~~~a~~l~~d~~~~~~~r~~~~~ 688 (788)
-|+.+ +.|.+.+|||+||+|||+-.|. ... +. .-|-.++ + ..|++++.+...+|.+|++++++ +.++
T Consensus 320 ~pS~~E~~g~~~lEAmA~G~PVV~~~~g-~~e-----~v-~~~~~G~lv~~~d~~~la~ai~~ll~~~~~~~~---~~~~ 389 (413)
T 2x0d_A 320 SLMISPHPSYPPLEMAHFGLRVITNKYE-NKD-----LS-NWHSNIVSLEQLNPENIAETLVELCMSFNNRDV---DKKE 389 (413)
T ss_dssp CCCSSSSCCSHHHHHHHTTCEEEEECBT-TBC-----GG-GTBTTEEEESSCSHHHHHHHHHHHHHHTC----------C
T ss_pred EecCCCCCCcHHHHHHhCCCcEEEeCCC-cch-----hh-hcCCCEEEeCCCCHHHHHHHHHHHHcCHHHHHH---hHHH
Confidence 99975 7799999999999999984332 111 11 2244454 3 36899999999999999887666 2222
Q ss_pred HhhcCCCCChHHHHHHHHHHHHHH
Q 003891 689 LMSKSPVCDGQNFALGLESTYRNM 712 (788)
Q Consensus 689 ~~~~~~~~~~~~~~~~~e~~~~~~ 712 (788)
+ ...|+++..+++ .+.|+++
T Consensus 390 ~---~~~~~W~~~~~~-~~~~~~l 409 (413)
T 2x0d_A 390 S---SNMMFYINEFNE-FSFIKEI 409 (413)
T ss_dssp C---BSCGGGCCCC----TTHHHH
T ss_pred H---HHhCCHHHHHHH-HHHHHHH
Confidence 2 234677666555 3344444
|
| >3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-09 Score=118.60 Aligned_cols=167 Identities=14% Similarity=0.100 Sum_probs=119.5
Q ss_pred CCCCeEEEecCCCC---cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 003891 523 TNGFITFGSFNNLA---KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 599 (788)
Q Consensus 523 ~~~~~~f~~~~~~~---K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~ 599 (788)
+++.++++++++.. |..+.++++|.++.+..|+.++++.+++ ....++.+++.+ +.. ++|.|+|.++ ..+
T Consensus 203 ~~~~~vl~~~gr~~~~~K~~~~li~a~~~l~~~~~~~~~i~~~g~--~~~~~~~~~~~~---~~~-~~v~~~g~~~-~~~ 275 (375)
T 3beo_A 203 GNNRLVLMTAHRRENLGEPMRNMFRAIKRLVDKHEDVQVVYPVHM--NPVVRETANDIL---GDY-GRIHLIEPLD-VID 275 (375)
T ss_dssp TTSEEEEEECCCGGGTTHHHHHHHHHHHHHHHHCTTEEEEEECCS--CHHHHHHHHHHH---TTC-TTEEEECCCC-HHH
T ss_pred cCCCeEEEEecccccchhHHHHHHHHHHHHHhhCCCeEEEEeCCC--CHHHHHHHHHHh---hcc-CCEEEeCCCC-HHH
Confidence 34566788888764 8889999999999988999987663332 222334443332 333 6999999877 568
Q ss_pred HHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccc-cCCHHHHHHHHHHHhcCHHH
Q 003891 600 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI-AKNEDEYVQLALQLASDVTA 678 (788)
Q Consensus 600 ~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i-a~~~~~y~~~a~~l~~d~~~ 678 (788)
....|..+|+++-|+ |.+++|||++|+|||+... ..+ . ..+ ..-| ..++ ..|.+++.+...+|.+|++.
T Consensus 276 ~~~~~~~ad~~v~~s----g~~~lEA~a~G~Pvi~~~~--~~~-~-~e~-v~~g-~g~~v~~d~~~la~~i~~ll~~~~~ 345 (375)
T 3beo_A 276 FHNVAARSYLMLTDS----GGVQEEAPSLGVPVLVLRD--TTE-R-PEG-IEAG-TLKLAGTDEETIFSLADELLSDKEA 345 (375)
T ss_dssp HHHHHHTCSEEEECC----HHHHHHHHHHTCCEEECSS--CCS-C-HHH-HHTT-SEEECCSCHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHhCcEEEECC----CChHHHHHhcCCCEEEecC--CCC-C-cee-ecCC-ceEEcCCCHHHHHHHHHHHHhChHh
Confidence 889999999999776 5559999999999998631 011 1 112 2335 4443 36999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 003891 679 LANLRMSLRDLMSKSPVCDGQNFALGLESTY 709 (788)
Q Consensus 679 ~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 709 (788)
+++|+++.++.. .-|+++++++.+++.+
T Consensus 346 ~~~~~~~~~~~~---~~~~~~~i~~~~~~~~ 373 (375)
T 3beo_A 346 HDKMSKASNPYG---DGRASERIVEAILKHF 373 (375)
T ss_dssp HHHHCCCCCTTC---CSCHHHHHHHHHHHHT
T ss_pred HhhhhhcCCCCC---CCcHHHHHHHHHHHHh
Confidence 888887665432 3478888888887765
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.6e-10 Score=97.98 Aligned_cols=94 Identities=16% Similarity=0.247 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 003891 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNN 274 (788)
Q Consensus 201 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~------~~~~~~ 274 (788)
...+..+|.++...|++++|+..|+++++.+|+++.++.++|.++..+|++++|++.++++++++|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45677777777777777777777777777777777777778888878888888888888887777777 777777
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 003891 275 LGVLYRDAGSISLAIDAYEQ 294 (788)
Q Consensus 275 la~~~~~~g~~~eA~~~~~~ 294 (788)
+|.++..+|++++|+..+++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHHH
Confidence 77777777776666655443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.7e-09 Score=93.33 Aligned_cols=81 Identities=22% Similarity=0.254 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003891 186 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 265 (788)
Q Consensus 186 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~ 265 (788)
|+..|+++++.+|++..+++.+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|++++++.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444443
Q ss_pred C
Q 003891 266 P 266 (788)
Q Consensus 266 p 266 (788)
|
T Consensus 84 ~ 84 (115)
T 2kat_A 84 Q 84 (115)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.95 E-value=4.7e-09 Score=92.66 Aligned_cols=85 Identities=25% Similarity=0.280 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003891 41 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 120 (788)
Q Consensus 41 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 120 (788)
++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|.+..+++.+|.++...|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCc
Q 003891 121 VSPNF 125 (788)
Q Consensus 121 ~~p~~ 125 (788)
+.|..
T Consensus 82 ~~~~~ 86 (115)
T 2kat_A 82 AAQSR 86 (115)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 87753
|
| >3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-08 Score=111.15 Aligned_cols=165 Identities=12% Similarity=0.102 Sum_probs=117.3
Q ss_pred CCCCeEEEecCCC--CcCC-HHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 003891 523 TNGFITFGSFNNL--AKIT-PKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 599 (788)
Q Consensus 523 ~~~~~~f~~~~~~--~K~~-~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~ 599 (788)
++..+++.++++. .|.. ..+++...+. ...|+.++++.+++ ..++.+. ++ +++|.+.++++ ..+
T Consensus 216 ~~~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~~~p~~~~v~~~~~----~~~~~l~------~~-~~~v~~~~~~~-~~~ 282 (391)
T 3tsa_A 216 TSARRVCICMGRMVLNATGPAPLLRAVAAA-TELPGVEAVIAVPP----EHRALLT------DL-PDNARIAESVP-LNL 282 (391)
T ss_dssp CSSEEEEEECCHHHHHHHCSHHHHHHHHHH-HTSTTEEEEEECCG----GGGGGCT------TC-CTTEEECCSCC-GGG
T ss_pred CCCCEEEEEcCCCCCcccchHHHHHHHHHh-ccCCCeEEEEEECC----cchhhcc------cC-CCCEEEeccCC-HHH
Confidence 4556778888877 3445 7888888888 88899999888765 2122221 33 47899999976 444
Q ss_pred HHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC-----CHHHHHHHHHHHhc
Q 003891 600 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK-----NEDEYVQLALQLAS 674 (788)
Q Consensus 600 ~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~-----~~~~y~~~a~~l~~ 674 (788)
. +..||+++. -+|+.|++|||++|+|+|+++-. ......+..+...|..-++.. |.++..+...++.+
T Consensus 283 l---l~~ad~~v~---~~G~~t~~Ea~~~G~P~v~~p~~-~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~ll~ 355 (391)
T 3tsa_A 283 F---LRTCELVIC---AGGSGTAFTATRLGIPQLVLPQY-FDQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIATVLG 355 (391)
T ss_dssp T---GGGCSEEEE---CCCHHHHHHHHHTTCCEEECCCS-TTHHHHHHHHHHTTSEEECCSHHHHTCHHHHHHHHHHHHT
T ss_pred H---HhhCCEEEe---CCCHHHHHHHHHhCCCEEecCCc-ccHHHHHHHHHHcCCEEecCcccccCCHHHHHHHHHHHHc
Confidence 4 477999992 25667999999999999998541 122334556777787766654 78999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 675 DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 675 d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
|++.++++++..+.... . ...++.++.+|+...
T Consensus 356 ~~~~~~~~~~~~~~~~~-~--~~~~~~~~~i~~~~~ 388 (391)
T 3tsa_A 356 DTGFAAAAIKLSDEITA-M--PHPAALVRTLENTAA 388 (391)
T ss_dssp CTHHHHHHHHHHHHHHT-S--CCHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHHc-C--CCHHHHHHHHHHHHh
Confidence 99999998876655432 2 467788888876543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.92 E-value=9.1e-09 Score=86.02 Aligned_cols=84 Identities=42% Similarity=0.589 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003891 200 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 279 (788)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~ 279 (788)
+..++..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+++++++.+|++..++..+|.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34566666666667777777777777777766766667777777777777777777777777777777777777777666
Q ss_pred HHcC
Q 003891 280 RDAG 283 (788)
Q Consensus 280 ~~~g 283 (788)
..+|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 5543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.92 E-value=6.1e-10 Score=97.21 Aligned_cols=94 Identities=13% Similarity=0.175 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY------AEAYCN 97 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~------~~~~~~ 97 (788)
+..++.+|..+...|++++|+..|+++++.+|+++.+++++|.++...|++++|+..++++++.+|++ ..++..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34577888888888888889888888888888888888888888888888888888888888888888 788888
Q ss_pred HHHHHHHCCCHHHHHHHHHH
Q 003891 98 MGVIYKNRGDLESAIACYER 117 (788)
Q Consensus 98 la~~~~~~g~~~~A~~~~~~ 117 (788)
+|.++...|++++|+..+++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHHH
Confidence 88888888877766655543
|
| >3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.2e-08 Score=110.47 Aligned_cols=176 Identities=10% Similarity=0.011 Sum_probs=128.0
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC---cEEEEecCCCC-CHH----HHHHHHHHHHHc----CCCCCcEEE
Q 003891 525 GFITFGSFNNL--AKITPKVLQVWARILCAVPN---SRLVVKCKPFC-CDS----VRHRFLSTLEQL----GLESLRVDL 590 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~---~~l~l~~~~~~-~~~----~~~~l~~~~~~~----gi~~~rv~~ 590 (788)
+..++.+++|+ .|..+..++++ +++++.|+ .+|+++|.+.. +.+ +++.+.+.+.+. |.. +|+|
T Consensus 280 ~~~lIl~VgRLd~~KGi~~lL~Af-~ll~~~P~~~~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~--~V~f 356 (496)
T 3t5t_A 280 GHRLVVHSGRTDPIKNAERAVRAF-VLAARGGGLEKTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSD--TVRI 356 (496)
T ss_dssp TSEEEEEEEESSGGGCHHHHHHHH-HHHHHTSSCTTEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTT--SEEE
T ss_pred CceEEEEcccCccccCHHHHHHHH-HHHHhCcccceEEEEEEECCCCCCchHHHHHHHHHHHHHHHhccccCCc--CEEE
Confidence 34566677877 99999999999 99999997 45887775432 222 334444443332 443 7999
Q ss_pred cCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhC---CceeecCCCccCccchhHHHhhhCCcccc--cCCHHH
Q 003891 591 LPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMG---VPCVTMAGSVHAHNVGVSLLTKVGLKHLI--AKNEDE 664 (788)
Q Consensus 591 ~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~G---vPvvt~~g~~~~~r~~~~~l~~~gl~~~i--a~~~~~ 664 (788)
++.++ .++..++|+.+|||+-|+-+ +-|.+++|||+|| .|+|. |..+++ ...+|-..++ ..|.++
T Consensus 357 ~g~v~-~~el~aly~~ADv~vv~SlrEGfgLv~~EamA~~~~~g~lVl-------Se~aGa-~~~l~~~allVnP~D~~~ 427 (496)
T 3t5t_A 357 DNDND-VNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVNERDADVIL-------SETCGA-AEVLGEYCRSVNPFDLVE 427 (496)
T ss_dssp EECCC-HHHHHHHHHHCSEEEECCSSBSCCSHHHHHHHHCSSCCEEEE-------ETTBTT-HHHHGGGSEEECTTBHHH
T ss_pred eCCCC-HHHHHHHHHhccEEEECcccccCChhHHHHHHhCCCCCCEEE-------eCCCCC-HHHhCCCEEEECCCCHHH
Confidence 99876 78999999999999999988 7799999999995 56654 444321 1112222333 358999
Q ss_pred HHHHHHHHhcCH-HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 003891 665 YVQLALQLASDV-TALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 715 (788)
Q Consensus 665 y~~~a~~l~~d~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 715 (788)
..+...++.+++ +.++++.+++++++.+ +|...+++.+.+.++....+
T Consensus 428 lA~AI~~aL~m~~~er~~r~~~~~~~V~~---~d~~~W~~~fl~~L~~~~~~ 476 (496)
T 3t5t_A 428 QAEAISAALAAGPRQRAEAAARRRDAARP---WTLEAWVQAQLDGLAADHAA 476 (496)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHTT---CBHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHhhcccc
Confidence 999988888764 6777777888888754 68999999999999888654
|
| >2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=3.6e-09 Score=116.21 Aligned_cols=143 Identities=10% Similarity=0.039 Sum_probs=111.0
Q ss_pred eEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhccc
Q 003891 527 ITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSL 606 (788)
Q Consensus 527 ~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~ 606 (788)
+++++++++.+.- .+ +..+.+..|+.+|+|+|.| + +++.|+. ++|.|+|.++ .++....|+.
T Consensus 223 ~~i~~vGrl~~~K-g~---~~~l~~~~~~~~l~ivG~g----~--------~~~~~l~-~~V~f~G~~~-~~~l~~~~~~ 284 (406)
T 2hy7_A 223 IHAVAVGSMLFDP-EF---FVVASKAFPQVTFHVIGSG----M--------GRHPGYG-DNVIVYGEMK-HAQTIGYIKH 284 (406)
T ss_dssp EEEEEECCTTBCH-HH---HHHHHHHCTTEEEEEESCS----S--------CCCTTCC-TTEEEECCCC-HHHHHHHHHT
T ss_pred cEEEEEecccccc-CH---HHHHHHhCCCeEEEEEeCc----h--------HHhcCCC-CCEEEcCCCC-HHHHHHHHHh
Confidence 6788888874432 22 6777778899999999976 2 4567887 8999999987 6888999999
Q ss_pred ccEeecCCCC-CCchhHHHHh-------hhCCceeecCCCccCccchhHHHhhhCCcccc---cCCHHHHHHHHHHHhcC
Q 003891 607 MDISLDTFPY-AGTTTTCESL-------YMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI---AKNEDEYVQLALQLASD 675 (788)
Q Consensus 607 ~Dv~Ld~~~~-~g~~t~~eal-------~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~i---a~~~~~y~~~a~~l~~d 675 (788)
+|+++-|+.+ +.+.+.+||| ++|+|||+-. + +. -|..+++ ..|.+++++...++.+|
T Consensus 285 adv~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~-------~----v~-~~~~G~l~v~~~d~~~la~ai~~ll~~ 352 (406)
T 2hy7_A 285 ARFGIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPN-------A----VV-GPYKSRFGYTPGNADSVIAAITQALEA 352 (406)
T ss_dssp CSEEECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEG-------G----GT-CSCSSEEEECTTCHHHHHHHHHHHHHC
T ss_pred cCEEEECCCcccCchHHHHHHHHHHHHhhCCCcEEEeh-------h----cc-cCcceEEEeCCCCHHHHHHHHHHHHhC
Confidence 9999999977 6689999999 9999999843 2 11 1333433 46999999999999998
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH--HHH
Q 003891 676 VTALANLRMSLRDLMSKSPVCDGQNFALGLEST--YRN 711 (788)
Q Consensus 676 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~--~~~ 711 (788)
++ + .....|+++..++++++. |.+
T Consensus 353 ~~---------~---~~~~~~sw~~~a~~~~~~~~y~~ 378 (406)
T 2hy7_A 353 PR---------V---RYRQCLNWSDTTDRVLDPRAYPE 378 (406)
T ss_dssp CC---------C---CCSCCCBHHHHHHHHHCGGGSGG
T ss_pred cc---------h---hhhhcCCHHHHHHHHHHhhcccc
Confidence 86 1 123558999999999888 654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.86 E-value=2.6e-08 Score=83.11 Aligned_cols=81 Identities=35% Similarity=0.514 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 25 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 104 (788)
Q Consensus 25 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~ 104 (788)
..++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+.+++++++.+|++..++..+|.++..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 34566666666777777777777777777777777777777777777777777777777777777777777777766655
Q ss_pred C
Q 003891 105 R 105 (788)
Q Consensus 105 ~ 105 (788)
.
T Consensus 90 ~ 90 (91)
T 1na3_A 90 Q 90 (91)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.83 E-value=9.7e-09 Score=114.61 Aligned_cols=127 Identities=9% Similarity=-0.038 Sum_probs=105.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhc-----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCC---H
Q 003891 172 NLGVAYGEMLKFDMAIVFYELAFHF-----NPH---CAEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPNF---S 235 (788)
Q Consensus 172 ~la~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~---~ 235 (788)
..+..+..+|+|++|+..+++++++ .++ ...++.++|.+|..+|+|++|+.++++++++ .+++ .
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 3445567899999999999999976 233 4678899999999999999999999999976 3444 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003891 236 QSLNNLGVVYTVQGKMDAAAEMIEKAIAA-----NPTYA---EAYNNLGVLYRDAGSISLAIDAYEQCLKI 298 (788)
Q Consensus 236 ~~~~~la~~~~~~g~~~eA~~~l~kal~~-----~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~l 298 (788)
..+++||.+|..+|++++|+.+|++++++ .|+++ +...+++.++..++.+++|...|+++.+.
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999976 45554 55678999999999999999999988653
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=9.4e-08 Score=96.37 Aligned_cols=108 Identities=18% Similarity=0.107 Sum_probs=94.0
Q ss_pred hcCCCCHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc-----CCHHHHHH
Q 003891 195 HFNPHCAEACNNLGVIYKD-----RD------NLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQ-----GKMDAAAE 256 (788)
Q Consensus 195 ~~~p~~~~~~~~la~~~~~-----~g------~~~eA~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~eA~~ 256 (788)
+.+|++.+.++..|.+... .| ...+|...++++++++|+ +..+|..+|.+|... |+.++|.+
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 4578888888887776643 13 357899999999999999 566999999999995 99999999
Q ss_pred HHHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCC
Q 003891 257 MIEKAIAANPTY-AEAYNNLGVLYRD-AGSISLAIDAYEQCLKIDPDS 302 (788)
Q Consensus 257 ~l~kal~~~p~~-~~~~~~la~~~~~-~g~~~eA~~~~~~al~l~p~~ 302 (788)
+|+++++++|+. ...++.+|..+.. +|++++|.++++++++.+|..
T Consensus 226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 999999999975 9999999999988 599999999999999998874
|
| >4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2e-08 Score=109.92 Aligned_cols=162 Identities=15% Similarity=0.084 Sum_probs=99.1
Q ss_pred CCCCeEEEecCCCC--cC------CHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCc
Q 003891 523 TNGFITFGSFNNLA--KI------TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLI 594 (788)
Q Consensus 523 ~~~~~~f~~~~~~~--K~------~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~ 594 (788)
++..+++.++++.. |. ....++...+.+... +.++++.+++ ..++.+. .+ +++|.+.+++
T Consensus 225 ~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~~v~~~~~----~~~~~l~------~~-~~~v~~~~~~ 292 (398)
T 4fzr_A 225 RKQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKL-GFEVVVAVSD----KLAQTLQ------PL-PEGVLAAGQF 292 (398)
T ss_dssp CSSCEEECC----------------CCSHHHHHHHGGGG-TCEEEECCCC------------------C-CTTEEEESCC
T ss_pred CCCCEEEEEccCcccccccccccchHHHHHHHHHHHHhC-CCEEEEEeCC----cchhhhc------cC-CCcEEEeCcC
Confidence 35567777777663 21 233444445555555 4677776654 2222222 23 4899999997
Q ss_pred CCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC---CHHHHHHHHHH
Q 003891 595 LLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQ 671 (788)
Q Consensus 595 ~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~ 671 (788)
+ ..+ .+..||+++. -+|++|++|||++|||+|+++-. ......+..+...|..-++.. |.++..+...+
T Consensus 293 ~-~~~---ll~~ad~~v~---~gG~~t~~Ea~~~G~P~v~~p~~-~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~ai~~ 364 (398)
T 4fzr_A 293 P-LSA---IMPACDVVVH---HGGHGTTLTCLSEGVPQVSVPVI-AEVWDSARLLHAAGAGVEVPWEQAGVESVLAACAR 364 (398)
T ss_dssp C-HHH---HGGGCSEEEE---CCCHHHHHHHHHTTCCEEECCCS-GGGHHHHHHHHHTTSEEECC-------CHHHHHHH
T ss_pred C-HHH---HHhhCCEEEe---cCCHHHHHHHHHhCCCEEecCCc-hhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHH
Confidence 5 444 4455999992 36678999999999999998642 122234556677777766643 67889999999
Q ss_pred HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 003891 672 LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLES 707 (788)
Q Consensus 672 l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~ 707 (788)
+.+|++.++++++..++... ....++.++.+|+
T Consensus 365 ll~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~ 397 (398)
T 4fzr_A 365 IRDDSSYVGNARRLAAEMAT---LPTPADIVRLIEQ 397 (398)
T ss_dssp HHHCTHHHHHHHHHHHHHTT---SCCHHHHHHHHTC
T ss_pred HHhCHHHHHHHHHHHHHHHc---CCCHHHHHHHHhc
Confidence 99999999998887765432 2467888877764
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=8.5e-08 Score=87.84 Aligned_cols=109 Identities=22% Similarity=0.319 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 003891 148 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVEC 223 (788)
Q Consensus 148 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~ 223 (788)
++++|+++|+++.+...... . +|.+|...+..++|+++|+++.+. .++.+++++|.+|.. .+++++|+.+
T Consensus 10 d~~~A~~~~~~aa~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFG--C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 45556666666655542222 2 555555555555555555555544 345555555555555 4555555555
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 003891 224 YQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAA 264 (788)
Q Consensus 224 ~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~kal~~ 264 (788)
|+++.+. .++.+.+++|.+|.. .+++++|+++|+++.+.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 5555543 345555555555555 45555555555555444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.81 E-value=7.7e-09 Score=88.35 Aligned_cols=91 Identities=13% Similarity=0.146 Sum_probs=67.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003891 205 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 283 (788)
Q Consensus 205 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g 283 (788)
+..|.++...|++++|+..|+++++.+|++.. ++..+|.++...|++++|++.|+++++++|++..++.+ +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45677777777777777777777777777777 77777777777777777777777777777777766543 5
Q ss_pred CHHHHHHHHHHHHhhCCCCh
Q 003891 284 SISLAIDAYEQCLKIDPDSR 303 (788)
Q Consensus 284 ~~~eA~~~~~~al~l~p~~~ 303 (788)
.+.+++..|+++...+|++.
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHhccCcccc
Confidence 56677777777777777654
|
| >1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3 | Back alignment and structure |
|---|
Probab=98.80 E-value=5.1e-08 Score=105.68 Aligned_cols=144 Identities=16% Similarity=0.141 Sum_probs=103.6
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEe-cCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 003891 524 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVK-CKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 600 (788)
Q Consensus 524 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~-~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~ 600 (788)
++.++++++++. .|..+.+++++.++.+..|+.+|++. |.+ +..++.+++.+. . .++|.|+|.++ ..+.
T Consensus 197 ~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~lv~~~g~~---~~~~~~l~~~~~---~-~~~v~~~g~~g-~~~~ 268 (376)
T 1v4v_A 197 EGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHLN---PVVREAVFPVLK---G-VRNFVLLDPLE-YGSM 268 (376)
T ss_dssp SSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECCSC---HHHHHHHHHHHT---T-CTTEEEECCCC-HHHH
T ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHHHhhCCCeEEEEECCCC---HHHHHHHHHHhc---c-CCCEEEECCCC-HHHH
Confidence 456677778865 45678899999999888999998886 533 235666665542 2 36999998876 4588
Q ss_pred HHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHHH
Q 003891 601 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALA 680 (788)
Q Consensus 601 ~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~ 680 (788)
...|+.||+++-++ ||. ++|||++|+|||+.... .+... + ...|..-++..|.++..+...++.+|++.++
T Consensus 269 ~~~~~~ad~~v~~S---~g~-~lEA~a~G~PvI~~~~~--~~~~~--~-~~~g~g~lv~~d~~~la~~i~~ll~d~~~~~ 339 (376)
T 1v4v_A 269 AALMRASLLLVTDS---GGL-QEEGAALGVPVVVLRNV--TERPE--G-LKAGILKLAGTDPEGVYRVVKGLLENPEELS 339 (376)
T ss_dssp HHHHHTEEEEEESC---HHH-HHHHHHTTCCEEECSSS--CSCHH--H-HHHTSEEECCSCHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhCcEEEECC---cCH-HHHHHHcCCCEEeccCC--Ccchh--h-hcCCceEECCCCHHHHHHHHHHHHhChHhhh
Confidence 88999999998765 444 78999999999975311 11111 1 2234333343799999999999999998888
Q ss_pred HHHH
Q 003891 681 NLRM 684 (788)
Q Consensus 681 ~~r~ 684 (788)
+|++
T Consensus 340 ~~~~ 343 (376)
T 1v4v_A 340 RMRK 343 (376)
T ss_dssp HHHH
T ss_pred hhcc
Confidence 8875
|
| >3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=8.2e-07 Score=97.56 Aligned_cols=167 Identities=15% Similarity=0.140 Sum_probs=116.4
Q ss_pred CCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEE-ecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 003891 522 LTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVV-KCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 600 (788)
Q Consensus 522 ~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l-~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~ 600 (788)
.++..+++.++++..+..++.+....+.+...| .++++ .|.+.. .+.+. .+ +++|.+.++++ ..+
T Consensus 244 ~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~-~~~v~~~g~~~~----~~~l~------~~-~~~v~~~~~~~-~~~- 309 (415)
T 3rsc_A 244 ADDLPVVLVSLGTTFNDRPGFFRDCARAFDGQP-WHVVMTLGGQVD----PAALG------DL-PPNVEAHRWVP-HVK- 309 (415)
T ss_dssp SSCCCEEEEECTTTSCCCHHHHHHHHHHHTTSS-CEEEEECTTTSC----GGGGC------CC-CTTEEEESCCC-HHH-
T ss_pred CCCCCEEEEECCCCCCChHHHHHHHHHHHhcCC-cEEEEEeCCCCC----hHHhc------CC-CCcEEEEecCC-HHH-
Confidence 356678899999887777777887778888887 55555 443311 11111 23 47899999987 334
Q ss_pred HHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC---CHHHHHHHHHHHhcCHH
Q 003891 601 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVT 677 (788)
Q Consensus 601 ~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~ 677 (788)
.+..||+++.. +|..|++|||++|+|+|+++- .......+..+...|..-.+.. +.++..+...++.+|++
T Consensus 310 --ll~~ad~~v~~---~G~~t~~Ea~~~G~P~v~~p~-~~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~ 383 (415)
T 3rsc_A 310 --VLEQATVCVTH---GGMGTLMEALYWGRPLVVVPQ-SFDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGAVAADPA 383 (415)
T ss_dssp --HHHHEEEEEES---CCHHHHHHHHHTTCCEEECCC-SGGGHHHHHHHHHHTCEEECCGGGCCHHHHHHHHHHHHTCHH
T ss_pred --HHhhCCEEEEC---CcHHHHHHHHHhCCCEEEeCC-cchHHHHHHHHHHcCCEEEcccCCCCHHHHHHHHHHHHcCHH
Confidence 44559999832 556789999999999999864 2223345667777788765543 78999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 003891 678 ALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 711 (788)
Q Consensus 678 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 711 (788)
.++++++..+... .. ...++.++.+|+.+++
T Consensus 384 ~~~~~~~~~~~~~-~~--~~~~~~~~~i~~~~~~ 414 (415)
T 3rsc_A 384 LLARVEAMRGHVR-RA--GGAARAADAVEAYLAR 414 (415)
T ss_dssp HHHHHHHHHHHHH-HS--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hc--CHHHHHHHHHHHHhhc
Confidence 8888877555432 22 4567788888877653
|
| >3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.80 E-value=4.3e-07 Score=99.20 Aligned_cols=169 Identities=15% Similarity=0.120 Sum_probs=117.9
Q ss_pred CCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 003891 522 LTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 601 (788)
Q Consensus 522 ~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~ 601 (788)
.++..+++.++++..+..++.+....+.+...|--.++..|.+.. ++.+. .+ +++|.+.++++ ..
T Consensus 228 ~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~------~~-~~~v~~~~~~~-~~--- 292 (402)
T 3ia7_A 228 RPDAPVLLVSLGNQFNEHPEFFRACAQAFADTPWHVVMAIGGFLD----PAVLG------PL-PPNVEAHQWIP-FH--- 292 (402)
T ss_dssp STTCCEEEEECCSCSSCCHHHHHHHHHHHTTSSCEEEEECCTTSC----GGGGC------SC-CTTEEEESCCC-HH---
T ss_pred CCCCCEEEEECCCCCcchHHHHHHHHHHHhcCCcEEEEEeCCcCC----hhhhC------CC-CCcEEEecCCC-HH---
Confidence 356678888999887777777877777787777444444454311 11111 13 47899999986 23
Q ss_pred HhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC---CHHHHHHHHHHHhcCHHH
Q 003891 602 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTA 678 (788)
Q Consensus 602 ~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~ 678 (788)
..+..||+++.. +|+.|++|||++|+|+|+++.........+..+...|..-.+.. |.++..+...+|.+|++.
T Consensus 293 ~ll~~ad~~v~~---~G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~~~~ll~~~~~ 369 (402)
T 3ia7_A 293 SVLAHARACLTH---GTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAADSAV 369 (402)
T ss_dssp HHHTTEEEEEEC---CCHHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHHHHHHHHHHHHHCHHH
T ss_pred HHHhhCCEEEEC---CCHHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHHHHHHHHHHHHcCHHH
Confidence 566669999832 56678999999999999876422233445667777788766644 789999999999999998
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 003891 679 LANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 711 (788)
Q Consensus 679 ~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 711 (788)
++++++..++. .. ....++.++.+|+.++.
T Consensus 370 ~~~~~~~~~~~-~~--~~~~~~~~~~i~~~~~~ 399 (402)
T 3ia7_A 370 RERVRRMQRDI-LS--SGGPARAADEVEAYLGR 399 (402)
T ss_dssp HHHHHHHHHHH-HT--SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hh--CChHHHHHHHHHHHHhh
Confidence 88887765543 22 24677888888887653
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.7e-08 Score=110.98 Aligned_cols=129 Identities=12% Similarity=-0.023 Sum_probs=108.8
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCC
Q 003891 136 LTDLGTKVKLEGDINQGVAYYKKALYY-----NWHY---ADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------NPH 199 (788)
Q Consensus 136 l~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~ 199 (788)
....+..+..+|++++|+..+++++++ .+++ ..++.++|.+|..+|+|++|+.++++++++ +|+
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 391 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ 391 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 334445567899999999999999976 3444 457899999999999999999999999976 344
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003891 200 CAEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPNFS---QSLNNLGVVYTVQGKMDAAAEMIEKAIAA 264 (788)
Q Consensus 200 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~eA~~~l~kal~~ 264 (788)
....++++|.+|..+|++++|+.+|++|+++ .|+++ +...+++.++.+++.+++|...|+++.+.
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999986 45554 46778999999999999999999998654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.7e-08 Score=86.78 Aligned_cols=72 Identities=22% Similarity=0.367 Sum_probs=52.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003891 231 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302 (788)
Q Consensus 231 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 302 (788)
+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.+|..+|++++|++.|++++++.|++
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 567777777777777777777777777777777777777777777777777777777777777777765543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=1e-07 Score=87.37 Aligned_cols=111 Identities=19% Similarity=0.213 Sum_probs=101.3
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 003891 181 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAE 256 (788)
Q Consensus 181 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~ 256 (788)
+++++|+++|+++.+....... +|.+|...+..++|+++|+++.+. .++.+++++|.+|.. .+++++|++
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4789999999999988754443 999999999999999999999986 789999999999999 899999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Q 003891 257 MIEKAIAANPTYAEAYNNLGVLYRD----AGSISLAIDAYEQCLKID 299 (788)
Q Consensus 257 ~l~kal~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~l~ 299 (788)
+|+++.+. .++.+.++||.+|.. .+++++|+++|+++.+..
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999987 679999999999999 999999999999999874
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.5e-08 Score=86.50 Aligned_cols=90 Identities=20% Similarity=0.256 Sum_probs=77.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAP-AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 106 (788)
+.+|..+...|++++|+..|+++++.+|++.. +++.+|.++...|++++|+..|+++++.+|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45678888899999999999999999999999 99999999999999999999999999999998887744 5
Q ss_pred CHHHHHHHHHHHHhhCCCc
Q 003891 107 DLESAIACYERCLAVSPNF 125 (788)
Q Consensus 107 ~~~~A~~~~~~al~~~p~~ 125 (788)
.+.+++..|++++..+|++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHhccCccc
Confidence 6777888888877776654
|
| >3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.74 E-value=3.1e-08 Score=106.92 Aligned_cols=158 Identities=14% Similarity=0.156 Sum_probs=99.5
Q ss_pred CcCCHHHHHHHHHHHhHcCCcEEE-EecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCC
Q 003891 536 AKITPKVLQVWARILCAVPNSRLV-VKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF 614 (788)
Q Consensus 536 ~K~~~~~~~~~~~il~~~p~~~l~-l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~ 614 (788)
.+++..+.+++.++.... +..++ +.|.+ ..+.+.+.....++. +.+.+.+++ .-..|..||+++..
T Consensus 193 ~~~~~~~~~al~~l~~~~-~~~vi~~~G~~-----~~~~~~~~~~~~~~~---~~v~~f~~d---m~~~l~~aDlvI~r- 259 (365)
T 3s2u_A 193 EPLNKLLPEALAQVPLEI-RPAIRHQAGRQ-----HAEITAERYRTVAVE---ADVAPFISD---MAAAYAWADLVICR- 259 (365)
T ss_dssp SHHHHHHHHHHHTSCTTT-CCEEEEECCTT-----THHHHHHHHHHTTCC---CEEESCCSC---HHHHHHHCSEEEEC-
T ss_pred cccchhhHHHHHhccccc-ceEEEEecCcc-----ccccccceecccccc---cccccchhh---hhhhhccceEEEec-
Confidence 444444444444433222 23343 33332 234556666777664 455677653 44555669999932
Q ss_pred CCCCchhHHHHhhhCCceeecCCCcc---CccchhHHHhhhCCcccccC---CHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 003891 615 PYAGTTTTCESLYMGVPCVTMAGSVH---AHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTALANLRMSLRD 688 (788)
Q Consensus 615 ~~~g~~t~~eal~~GvPvvt~~g~~~---~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~~~~~r~~~~~ 688 (788)
+|++|++|++++|+|+|..+-... .....|..|...|...+|.. |.++..+...+|.+|++.+++|++++++
T Consensus 260 --aG~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll~d~~~~~~m~~~a~~ 337 (365)
T 3s2u_A 260 --AGALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLMHPETLRSMADQARS 337 (365)
T ss_dssp --CCHHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred --CCcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHHCCCEEEeecCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHh
Confidence 688999999999999887653221 13344677888888777653 5788999999999999999999999886
Q ss_pred HhhcCCCCChHHHHHHHHHHHHH
Q 003891 689 LMSKSPVCDGQNFALGLESTYRN 711 (788)
Q Consensus 689 ~~~~~~~~~~~~~~~~~e~~~~~ 711 (788)
.. .....++.++.+|++-+.
T Consensus 338 ~~---~~~aa~~ia~~i~~larG 357 (365)
T 3s2u_A 338 LA---KPEATRTVVDACLEVARG 357 (365)
T ss_dssp TC---CTTHHHHHHHHHHHHC--
T ss_pred cC---CccHHHHHHHHHHHHHcc
Confidence 52 222345566666655544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.73 E-value=6.5e-08 Score=83.04 Aligned_cols=72 Identities=22% Similarity=0.340 Sum_probs=66.0
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Q 003891 53 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 124 (788)
Q Consensus 53 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 124 (788)
.+|+++.+++.+|.++...|++++|+..|+++++.+|++..+++.+|.+|...|++++|++.|++++++.|.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 478999999999999999999999999999999999999999999999999999999999999999988654
|
| >3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=4.8e-07 Score=98.88 Aligned_cols=160 Identities=9% Similarity=0.027 Sum_probs=104.2
Q ss_pred CCCCeEEEecCCCCcC--CHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 003891 523 TNGFITFGSFNNLAKI--TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 600 (788)
Q Consensus 523 ~~~~~~f~~~~~~~K~--~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~ 600 (788)
++..+++.++++.... ....+....+.+... +.++++++++.. ++.+. ++ +++|.+.++++ ..+.
T Consensus 230 ~~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~-~~~~v~~~g~~~----~~~l~------~~-~~~v~~~~~~~-~~~l 296 (398)
T 3oti_A 230 PARPEVAITMGTIELQAFGIGAVEPIIAAAGEV-DADFVLALGDLD----ISPLG------TL-PRNVRAVGWTP-LHTL 296 (398)
T ss_dssp CSSCEEEECCTTTHHHHHCGGGHHHHHHHHHTS-SSEEEEECTTSC----CGGGC------SC-CTTEEEESSCC-HHHH
T ss_pred CCCCEEEEEcCCCccccCcHHHHHHHHHHHHcC-CCEEEEEECCcC----hhhhc------cC-CCcEEEEccCC-HHHH
Confidence 4567888888887321 334444444555555 567777765522 11111 33 47899999984 5555
Q ss_pred HHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchh--HHHhhhCCcccccC---CHHHHHHHHHHHhcC
Q 003891 601 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLIAK---NEDEYVQLALQLASD 675 (788)
Q Consensus 601 ~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~--~~l~~~gl~~~ia~---~~~~y~~~a~~l~~d 675 (788)
+. .||+|+. -+|+.|++|||++|||+|+++-.. .....+ ..+...|..-++.. +.+... ++.+|
T Consensus 297 l~---~ad~~v~---~~G~~t~~Eal~~G~P~v~~p~~~-dq~~~a~~~~~~~~g~g~~~~~~~~~~~~l~----~ll~~ 365 (398)
T 3oti_A 297 LR---TCTAVVH---HGGGGTVMTAIDAGIPQLLAPDPR-DQFQHTAREAVSRRGIGLVSTSDKVDADLLR----RLIGD 365 (398)
T ss_dssp HT---TCSEEEE---CCCHHHHHHHHHHTCCEEECCCTT-CCSSCTTHHHHHHHTSEEECCGGGCCHHHHH----HHHHC
T ss_pred Hh---hCCEEEE---CCCHHHHHHHHHhCCCEEEcCCCc-hhHHHHHHHHHHHCCCEEeeCCCCCCHHHHH----HHHcC
Confidence 54 4999992 266789999999999999976421 122334 66777787765543 334333 88899
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 003891 676 VTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 709 (788)
Q Consensus 676 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 709 (788)
++.++++++..++... . ...+..+..+|+..
T Consensus 366 ~~~~~~~~~~~~~~~~-~--~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 366 ESLRTAAREVREEMVA-L--PTPAETVRRIVERI 396 (398)
T ss_dssp HHHHHHHHHHHHHHHT-S--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-C--CCHHHHHHHHHHHh
Confidence 9999998877765433 2 46788888888764
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=5.6e-07 Score=90.76 Aligned_cols=183 Identities=11% Similarity=-0.006 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003891 42 DGIQKYYEALKIDPHYAPAYYNLGVVYSELM---------------------QYDTALGCYEKAALERPMYAEAYCNMGV 100 (788)
Q Consensus 42 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---------------------~~~~A~~~~~kal~~~p~~~~~~~~la~ 100 (788)
-.+..++-.+..+|++...+...|..|..-. ++..|.++|.++.+. ...+.
T Consensus 50 ~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y--------~~raL 121 (301)
T 3u64_A 50 LVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARY--------ALSSL 121 (301)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH--------HHHHH
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHH--------HHHHH
Confidence 4566777788889999777666665554321 233455555554331 11111
Q ss_pred HHHHCCCHHHHHH-----HHHH-HHhhCCCcHHHHHHHHHHHHHhhhh----hhhcCCHHHHHHHHHHHHHhCCC--CHH
Q 003891 101 IYKNRGDLESAIA-----CYER-CLAVSPNFEIAKNNMAIALTDLGTK----VKLEGDINQGVAYYKKALYYNWH--YAD 168 (788)
Q Consensus 101 ~~~~~g~~~~A~~-----~~~~-al~~~p~~~~~~~~la~~l~~lg~~----~~~~g~~~~A~~~~~~al~~~p~--~~~ 168 (788)
+ .....+.+++. -+.+ .-+.+|++.+.++..+.++...... ....+...+|...++++++++|+ +..
T Consensus 122 ~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~Gs 200 (301)
T 3u64_A 122 E-TAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGA 200 (301)
T ss_dssp H-HHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHH
T ss_pred H-HhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCH
Confidence 1 11122222222 1222 3345677777777766665443221 22334567788888888888888 455
Q ss_pred HHHHHHHHHHHc-----CChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC
Q 003891 169 AMYNLGVAYGEM-----LKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDR-DNLDKAVECYQMALSIKPN 233 (788)
Q Consensus 169 ~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~p~ 233 (788)
++..+|.+|... |+.++|.++|+++++++|+. ...++.+|..++.. |++++|..+++++++..|.
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 788888888774 78888888888888888864 77777788777774 7788888888888776654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.66 E-value=6.2e-07 Score=94.37 Aligned_cols=57 Identities=12% Similarity=0.019 Sum_probs=30.0
Q ss_pred HHHHcCCCChhhHHHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 8 KALSADPSYKPAAECLAIVLTDLGTSLKLAG---NTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 69 (788)
Q Consensus 8 kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 69 (788)
++...-|.+.+++.. +..|..+...+ +..+|+.+|+++++++|+++.++..++.+|.
T Consensus 185 r~~~~~p~~~~Aydl-----~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~ 244 (372)
T 3ly7_A 185 TLQKILPHRGALLTN-----FYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDI 244 (372)
T ss_dssp HHHHHSCSSGGGHHH-----HHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344455555555442 22333333332 2356666666666666666666666665554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.62 E-value=6.1e-07 Score=94.44 Aligned_cols=146 Identities=18% Similarity=0.125 Sum_probs=111.6
Q ss_pred HHHHhCCCCHHHH--HHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CHHHHHH----HH
Q 003891 158 KALYYNWHYADAM--YNLGVAYGEMLK---FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD----NLDKAVE----CY 224 (788)
Q Consensus 158 ~al~~~p~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~eA~~----~~ 224 (788)
++....|.+.++| +..|..+...++ ..+|+.+|+++++++|++..++..++.+|.... ....... .+
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~ 264 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI 264 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence 3444566665543 445565655544 578999999999999999998888887775311 1111111 22
Q ss_pred HH--HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003891 225 QM--ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302 (788)
Q Consensus 225 ~~--al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 302 (788)
+. ++...|.++.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++|+.++|..
T Consensus 265 ~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 265 DNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 21 22457899999999999999999999999999999999975 7788999999999999999999999999999987
Q ss_pred hh
Q 003891 303 RN 304 (788)
Q Consensus 303 ~~ 304 (788)
+.
T Consensus 344 ~t 345 (372)
T 3ly7_A 344 NT 345 (372)
T ss_dssp HH
T ss_pred Ch
Confidence 53
|
| >3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-07 Score=106.91 Aligned_cols=135 Identities=21% Similarity=0.157 Sum_probs=91.1
Q ss_pred HHHHHHHHHcCCCC---Cc--EEEcCCcCCcH------HHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCc
Q 003891 572 HRFLSTLEQLGLES---LR--VDLLPLILLNH------DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSV 639 (788)
Q Consensus 572 ~~l~~~~~~~gi~~---~r--v~~~~~~~~~~------~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~ 639 (788)
+.+...+++.|+.. +| |+|.|.-.+.. ++...|+.||+|+-|+-| +.|.|.+|||+||+||||
T Consensus 473 D~Il~~~r~l~L~N~~~drVKVIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~----- 547 (725)
T 3nb0_A 473 DLILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSIT----- 547 (725)
T ss_dssp CHHHHHHHHHTCCCCTTCSEEEEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEE-----
T ss_pred cHHHHHHHhcCCCCCcCCceeEEEeccccCCCCccchhHHHHHHhhceEEEeccccCCCCHHHHHHHHcCCCEEE-----
Confidence 34555666667652 23 56776544333 577888899999999988 779999999999999998
Q ss_pred cCccchhH--HHhh-hC-----Ccc-ccc----CCHHHHHHHHHH----Hh-cCHHHHHHHHHHHHHHhhcCCCCChHHH
Q 003891 640 HAHNVGVS--LLTK-VG-----LKH-LIA----KNEDEYVQLALQ----LA-SDVTALANLRMSLRDLMSKSPVCDGQNF 701 (788)
Q Consensus 640 ~~~r~~~~--~l~~-~g-----l~~-~ia----~~~~~y~~~a~~----l~-~d~~~~~~~r~~~~~~~~~~~~~~~~~~ 701 (788)
+++++- ++.. .+ -.+ +|. .+.++.++...+ +. .|+..+..+|++.++.. ..|+++.+
T Consensus 548 --s~~gG~~d~V~dg~~~~~~~~tG~lV~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A---~~FSWe~i 622 (725)
T 3nb0_A 548 --TNVSGFGSYMEDLIETNQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALS---DLLDWKRM 622 (725)
T ss_dssp --ETTBHHHHHHHTTSCHHHHHHTTEEEECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGG---GGGBHHHH
T ss_pred --eCCCChhhhhhccccccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH---HhCCHHHH
Confidence 555531 1111 11 123 331 245555444333 33 37888889998776443 35999999
Q ss_pred HHHHHHHHHHHHHHH
Q 003891 702 ALGLESTYRNMWHRY 716 (788)
Q Consensus 702 ~~~~e~~~~~~~~~~ 716 (788)
++.++++|+.+..+.
T Consensus 623 A~~Yl~~Ye~aL~~~ 637 (725)
T 3nb0_A 623 GLEYVKARQLALRRG 637 (725)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999998754
|
| >2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.4e-06 Score=82.78 Aligned_cols=138 Identities=14% Similarity=0.172 Sum_probs=92.9
Q ss_pred CCCeEEEecCCCC-cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 003891 524 NGFITFGSFNNLA-KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 602 (788)
Q Consensus 524 ~~~~~f~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 602 (788)
+..++|.++++.. ......+....+.+...| .++++++++... .++. ++|.|.++++ ..+.+.
T Consensus 20 ~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~-~~~~~~~g~~~~-------------~~~~-~~v~~~~~~~-~~~~l~ 83 (170)
T 2o6l_A 20 ENGVVVFSLGSMVSNMTEERANVIASALAQIP-QKVLWRFDGNKP-------------DTLG-LNTRLYKWIP-QNDLLG 83 (170)
T ss_dssp TTCEEEEECCSCCTTCCHHHHHHHHHHHTTSS-SEEEEECCSSCC-------------TTCC-TTEEEESSCC-HHHHHT
T ss_pred CCCEEEEECCCCcccCCHHHHHHHHHHHHhCC-CeEEEEECCcCc-------------ccCC-CcEEEecCCC-HHHHhc
Confidence 3456788888774 445556666666666666 455554443211 1343 7899999987 455554
Q ss_pred hcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC---CHHHHHHHHHHHhcCHHHH
Q 003891 603 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTAL 679 (788)
Q Consensus 603 ~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~~ 679 (788)
+..||+++. .+|++|++|||++|+|+|+.+-. ......+..+...|..-++.. +.++..+...++..|++.+
T Consensus 84 -~~~ad~~I~---~~G~~t~~Ea~~~G~P~i~~p~~-~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~ 158 (170)
T 2o6l_A 84 -HPKTRAFIT---HGGANGIYEAIYHGIPMVGIPLF-ADQPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVINDPSYK 158 (170)
T ss_dssp -STTEEEEEE---CCCHHHHHHHHHHTCCEEECCCS-TTHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCHHHH
T ss_pred -CCCcCEEEE---cCCccHHHHHHHcCCCEEeccch-hhHHHHHHHHHHcCCeEEeccccCCHHHHHHHHHHHHcCHHHH
Confidence 488999994 37889999999999999998742 112234556666777655432 7889999999999998644
Q ss_pred HHH
Q 003891 680 ANL 682 (788)
Q Consensus 680 ~~~ 682 (788)
+++
T Consensus 159 ~~a 161 (170)
T 2o6l_A 159 ENV 161 (170)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.8e-07 Score=101.83 Aligned_cols=170 Identities=15% Similarity=0.158 Sum_probs=113.2
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEE-EEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 003891 523 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRL-VVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 601 (788)
Q Consensus 523 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l-~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~ 601 (788)
+++.++|.++++..+...+.+....+.+...|+.++ |++|.+.. .+.+ + .+ +++|.|.|+++ ..
T Consensus 230 ~~~~~v~v~~Gs~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~~~----~~~l----~--~~-~~~v~~~~~~~-~~--- 294 (430)
T 2iyf_A 230 GAEKVVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQIGRKVT----PAEL----G--EL-PDNVEVHDWVP-QL--- 294 (430)
T ss_dssp TCSEEEEEECTTTCC-CHHHHHHHHHHHTTCTTEEEEEECC---C----GGGG----C--SC-CTTEEEESSCC-HH---
T ss_pred CCCCeEEEEcCCCCCCcHHHHHHHHHHHhcCCCeEEEEEeCCCCC----hHHh----c--cC-CCCeEEEecCC-HH---
Confidence 356678999998876566777777777766667676 45665411 1122 1 23 37899999986 22
Q ss_pred HhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC---CHHHHHHHHHHHhcCHHH
Q 003891 602 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTA 678 (788)
Q Consensus 602 ~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~ 678 (788)
..|..+|+|+. -+|++|++|||++|+|+|+.+-.. .....+..+...|..-++.. |.++..+...++.+|++.
T Consensus 295 ~~l~~ad~~v~---~~G~~t~~Ea~~~G~P~i~~p~~~-~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~ 370 (430)
T 2iyf_A 295 AILRQADLFVT---HAGAGGSQEGLATATPMIAVPQAV-DQFGNADMLQGLGVARKLATEEATADLLRETALALVDDPEV 370 (430)
T ss_dssp HHHTTCSEEEE---CCCHHHHHHHHHTTCCEEECCCSH-HHHHHHHHHHHTTSEEECCCC-CCHHHHHHHHHHHHHCHHH
T ss_pred HHhhccCEEEE---CCCccHHHHHHHhCCCEEECCCcc-chHHHHHHHHHcCCEEEcCCCCCCHHHHHHHHHHHHcCHHH
Confidence 56778999985 256689999999999999976421 11123445566676544432 789999999999999998
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 003891 679 LANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 714 (788)
Q Consensus 679 ~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 714 (788)
++++++..+..... +..+..++.+|+.+++...
T Consensus 371 ~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~ 403 (430)
T 2iyf_A 371 ARRLRRIQAEMAQE---GGTRRAADLIEAELPARHE 403 (430)
T ss_dssp HHHHHHHHHHHHHH---CHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHhc---CcHHHHHHHHHHHhhcccc
Confidence 88888776654332 3667777777777665443
|
| >3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=98.51 E-value=9.2e-07 Score=96.40 Aligned_cols=147 Identities=13% Similarity=0.095 Sum_probs=103.3
Q ss_pred CCCCeEEEecCC---CCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 003891 523 TNGFITFGSFNN---LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 599 (788)
Q Consensus 523 ~~~~~~f~~~~~---~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~ 599 (788)
+++.+++.+..| ..|..+.+++++.++.++.|+.++++..++ .+..++.+++. .+.. ++|.|.+.+. ..+
T Consensus 228 ~~~~~vlv~~hR~~~~~~~~~~ll~A~~~l~~~~~~~~~v~~~g~--~~~~~~~l~~~---~~~~-~~v~~~~~lg-~~~ 300 (396)
T 3dzc_A 228 ASKKLILVTGHRRESFGGGFERICQALITTAEQHPECQILYPVHL--NPNVREPVNKL---LKGV-SNIVLIEPQQ-YLP 300 (396)
T ss_dssp TTSEEEEEECSCBCCCTTHHHHHHHHHHHHHHHCTTEEEEEECCB--CHHHHHHHHHH---TTTC-TTEEEECCCC-HHH
T ss_pred CCCCEEEEEECCcccchhHHHHHHHHHHHHHHhCCCceEEEEeCC--ChHHHHHHHHH---HcCC-CCEEEeCCCC-HHH
Confidence 345555666644 335567899999999988999988875332 12345555443 2444 6899998876 578
Q ss_pred HHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHH
Q 003891 600 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTAL 679 (788)
Q Consensus 600 ~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~ 679 (788)
+..+|+.||+++-++ ||.+ +||+++|+|||+.... .+|. . +...|..-+|..|.++.++...+|.+|++.+
T Consensus 301 ~~~l~~~ad~vv~~S---Gg~~-~EA~a~G~PvV~~~~~--~~~~--e-~v~~G~~~lv~~d~~~l~~ai~~ll~d~~~~ 371 (396)
T 3dzc_A 301 FVYLMDRAHIILTDS---GGIQ-EEAPSLGKPVLVMRET--TERP--E-AVAAGTVKLVGTNQQQICDALSLLLTDPQAY 371 (396)
T ss_dssp HHHHHHHCSEEEESC---SGGG-TTGGGGTCCEEECCSS--CSCH--H-HHHHTSEEECTTCHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHhcCEEEECC---ccHH-HHHHHcCCCEEEccCC--Ccch--H-HHHcCceEEcCCCHHHHHHHHHHHHcCHHHH
Confidence 889999999998665 4444 9999999999985321 1221 1 2334655455568999999999999999888
Q ss_pred HHHHHH
Q 003891 680 ANLRMS 685 (788)
Q Consensus 680 ~~~r~~ 685 (788)
++|++.
T Consensus 372 ~~m~~~ 377 (396)
T 3dzc_A 372 QAMSQA 377 (396)
T ss_dssp HHHHTS
T ss_pred HHHhhc
Confidence 877764
|
| >3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.48 E-value=7.3e-07 Score=97.36 Aligned_cols=147 Identities=16% Similarity=0.193 Sum_probs=104.7
Q ss_pred CCCCeEEEecCCC---CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 003891 523 TNGFITFGSFNNL---AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 599 (788)
Q Consensus 523 ~~~~~~f~~~~~~---~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~ 599 (788)
+++.+++.+.++. -|..+.+++++.++.++.|+.++++.+++ .+..++.+++. .+.. ++|.|++.+. ..+
T Consensus 222 ~~~~~vlv~~~r~~~~~~~l~~ll~a~~~l~~~~~~~~~v~~~~~--~~~~~~~l~~~---~~~~-~~v~l~~~l~-~~~ 294 (403)
T 3ot5_A 222 GDNRLILMTAHRRENLGEPMQGMFEAVREIVESREDTELVYPMHL--NPAVREKAMAI---LGGH-ERIHLIEPLD-AID 294 (403)
T ss_dssp TTCEEEEECCCCHHHHTTHHHHHHHHHHHHHHHCTTEEEEEECCS--CHHHHHHHHHH---HTTC-TTEEEECCCC-HHH
T ss_pred cCCCEEEEEeCcccccCcHHHHHHHHHHHHHHhCCCceEEEecCC--CHHHHHHHHHH---hCCC-CCEEEeCCCC-HHH
Confidence 4555667777764 35458899999999999999888876433 12344444433 3444 6899999876 678
Q ss_pred HHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHH
Q 003891 600 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTAL 679 (788)
Q Consensus 600 ~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~ 679 (788)
+..+|..||+++-++ ||.+ +||+++|+|||+.+.. .+|.- +...|-.-+|..|.++.++...++.+|++.+
T Consensus 295 ~~~l~~~ad~vv~~S---Gg~~-~EA~a~g~PvV~~~~~--~~~~e---~v~~g~~~lv~~d~~~l~~ai~~ll~~~~~~ 365 (403)
T 3ot5_A 295 FHNFLRKSYLVFTDS---GGVQ-EEAPGMGVPVLVLRDT--TERPE---GIEAGTLKLIGTNKENLIKEALDLLDNKESH 365 (403)
T ss_dssp HHHHHHHEEEEEECC---HHHH-HHGGGTTCCEEECCSS--CSCHH---HHHHTSEEECCSCHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHhcCEEEECC---ccHH-HHHHHhCCCEEEecCC--Ccchh---heeCCcEEEcCCCHHHHHHHHHHHHcCHHHH
Confidence 999999999998554 4444 9999999999997421 12221 1234644455569999999999999999888
Q ss_pred HHHHHH
Q 003891 680 ANLRMS 685 (788)
Q Consensus 680 ~~~r~~ 685 (788)
++|++.
T Consensus 366 ~~m~~~ 371 (403)
T 3ot5_A 366 DKMAQA 371 (403)
T ss_dssp HHHHHS
T ss_pred HHHHhh
Confidence 887653
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.4e-06 Score=79.55 Aligned_cols=92 Identities=11% Similarity=0.047 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 216 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG---KMDAAAEMIEKAIAAN-P-TYAEAYNNLGVLYRDAGSISLAID 290 (788)
Q Consensus 216 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~l~kal~~~-p-~~~~~~~~la~~~~~~g~~~eA~~ 290 (788)
....+.+.|.+.++.++.+.++.+++|+++.+.+ +.++++.+++..++.+ | +..+.+++||..+.++|+|++|++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3456778888888888889999999999999988 6779999999999998 6 568999999999999999999999
Q ss_pred HHHHHHhhCCCChhhHH
Q 003891 291 AYEQCLKIDPDSRNAGQ 307 (788)
Q Consensus 291 ~~~~al~l~p~~~~a~~ 307 (788)
+++++++++|+|..+..
T Consensus 93 y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHCTTCHHHHH
T ss_pred HHHHHHhcCCCCHHHHH
Confidence 99999999999988754
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.7e-06 Score=72.96 Aligned_cols=72 Identities=15% Similarity=0.080 Sum_probs=59.7
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003891 231 KPNFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302 (788)
Q Consensus 231 ~p~~~~~~~~la~~~~~~g~---~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~ 302 (788)
+|++++.+..+|.+++..++ .++|...++++++.+|+++.+++.+|..+++.|+|++|+.+|+++++.+|++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57778888888888876655 6888888888888888888888888888888888888888888888888873
|
| >2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=98.37 E-value=5.9e-06 Score=89.63 Aligned_cols=162 Identities=13% Similarity=0.067 Sum_probs=102.7
Q ss_pred CCCeEEEecCCCCcC-----CHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcH
Q 003891 524 NGFITFGSFNNLAKI-----TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 598 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~-----~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~ 598 (788)
+..++|.++++.... ....+....+.+... +.++++++++ ...+.+. . + +++|.+ ++++ ..
T Consensus 209 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~-~~~~~~~~g~----~~~~~l~----~--~-~~~v~~-~~~~-~~ 274 (384)
T 2p6p_A 209 TRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRW-DVELIVAAPD----TVAEALR----A--E-VPQARV-GWTP-LD 274 (384)
T ss_dssp SSCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTT-TCEEEEECCH----HHHHHHH----H--H-CTTSEE-ECCC-HH
T ss_pred CCCEEEEECCCCCccccccccHHHHHHHHHHHhcC-CcEEEEEeCC----CCHHhhC----C--C-CCceEE-cCCC-HH
Confidence 446778888877543 223344334444443 5666665433 2333332 2 2 478999 9875 44
Q ss_pred HHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC---CHHHHHHHHHHHhcC
Q 003891 599 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASD 675 (788)
Q Consensus 599 ~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~l~~d 675 (788)
+ .+..||+|+.. +|+.|++|||++|||+|+.+-.. .....+..+...|..-++.. +.++..+...++.+|
T Consensus 275 ~---~l~~~d~~v~~---~G~~t~~Ea~~~G~P~v~~p~~~-dq~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 347 (384)
T 2p6p_A 275 V---VAPTCDLLVHH---AGGVSTLTGLSAGVPQLLIPKGS-VLEAPARRVADYGAAIALLPGEDSTEAIADSCQELQAK 347 (384)
T ss_dssp H---HGGGCSEEEEC---SCTTHHHHHHHTTCCEEECCCSH-HHHHHHHHHHHHTSEEECCTTCCCHHHHHHHHHHHHHC
T ss_pred H---HHhhCCEEEeC---CcHHHHHHHHHhCCCEEEccCcc-cchHHHHHHHHCCCeEecCcCCCCHHHHHHHHHHHHcC
Confidence 4 45679999953 56679999999999999987421 01223445566676554532 788999988899999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 003891 676 VTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 709 (788)
Q Consensus 676 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 709 (788)
++.++++++..+... ..+ ..++.+..+|...
T Consensus 348 ~~~~~~~~~~~~~~~-~~~--~~~~~~~~i~~~~ 378 (384)
T 2p6p_A 348 DTYARRAQDLSREIS-GMP--LPATVVTALEQLA 378 (384)
T ss_dssp HHHHHHHHHHHHHHH-TSC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-hCC--CHHHHHHHHHHHh
Confidence 998888877665443 222 4666666666654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.5e-06 Score=70.93 Aligned_cols=72 Identities=14% Similarity=-0.049 Sum_probs=65.0
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Q 003891 54 DPHYAPAYYNLGVVYSELMQ---YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 125 (788)
Q Consensus 54 ~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 125 (788)
+|+++..+..+|.+++..++ .++|...++++++.+|++..+++.+|..++..|+|++|+.+++++++.+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 68889999999999987666 7999999999999999999999999999999999999999999999998883
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=6.1e-06 Score=75.27 Aligned_cols=92 Identities=10% Similarity=-0.012 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHCCCHHHHHHH
Q 003891 40 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM---QYDTALGCYEKAALER-P-MYAEAYCNMGVIYKNRGDLESAIAC 114 (788)
Q Consensus 40 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~kal~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~ 114 (788)
...+.+.|.+.++.++.+.++.+++|.++.+.+ +.++++..++.+++.+ | ...++++++|..+++.|+|++|.++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 456788888888888999999999999999988 6779999999999998 7 5689999999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHH
Q 003891 115 YERCLAVSPNFEIAKNN 131 (788)
Q Consensus 115 ~~~al~~~p~~~~~~~~ 131 (788)
+++++++.|++..+...
T Consensus 94 ~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHCTTCHHHHHH
T ss_pred HHHHHhcCCCCHHHHHH
Confidence 99999999998765443
|
| >4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.1e-05 Score=87.77 Aligned_cols=163 Identities=15% Similarity=0.057 Sum_probs=103.8
Q ss_pred CCCCCeEEEecCCCC--cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 003891 522 LTNGFITFGSFNNLA--KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 599 (788)
Q Consensus 522 ~~~~~~~f~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~ 599 (788)
.++..++|.+|++.. +...+.+....+.+...+.-.+|..+.... ...+--++++.+.++++ ..+
T Consensus 234 ~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~------------~~~~~~~~~v~~~~~~p-~~~ 300 (400)
T 4amg_A 234 AAGRRRIAVTLGSIDALSGGIAKLAPLFSEVADVDAEFVLTLGGGDL------------ALLGELPANVRVVEWIP-LGA 300 (400)
T ss_dssp CTTCCEEEECCCSCC--CCSSSTTHHHHHHGGGSSSEEEEECCTTCC------------CCCCCCCTTEEEECCCC-HHH
T ss_pred cCCCcEEEEeCCcccccCccHHHHHHHHHHhhccCceEEEEecCccc------------cccccCCCCEEEEeecC-HHH
Confidence 356678888888763 333455666677777777666665543311 11122358999999987 455
Q ss_pred HHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHH
Q 003891 600 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTAL 679 (788)
Q Consensus 600 ~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~ 679 (788)
.+ ..+|+|+. .+|.+|++|||++|||+|+++-.. -....+..+...|+.-.+ .+.+.-.+...++.+|++.+
T Consensus 301 lL---~~~~~~v~---h~G~~s~~Eal~~GvP~v~~P~~~-dQ~~na~~v~~~G~g~~l-~~~~~~~~al~~lL~d~~~r 372 (400)
T 4amg_A 301 LL---ETCDAIIH---HGGSGTLLTALAAGVPQCVIPHGS-YQDTNRDVLTGLGIGFDA-EAGSLGAEQCRRLLDDAGLR 372 (400)
T ss_dssp HH---TTCSEEEE---CCCHHHHHHHHHHTCCEEECCC----CHHHHHHHHHHTSEEEC-CTTTCSHHHHHHHHHCHHHH
T ss_pred Hh---hhhhheec---cCCccHHHHHHHhCCCEEEecCcc-cHHHHHHHHHHCCCEEEc-CCCCchHHHHHHHHcCHHHH
Confidence 44 55999882 477889999999999999987421 233345566667775333 23333345666788999877
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 003891 680 ANLRMSLRDLMSKSPVCDGQNFALGLEST 708 (788)
Q Consensus 680 ~~~r~~~~~~~~~~~~~~~~~~~~~~e~~ 708 (788)
++.++ +++.+...+ .....++.||+.
T Consensus 373 ~~a~~-l~~~~~~~~--~~~~~a~~le~l 398 (400)
T 4amg_A 373 EAALR-VRQEMSEMP--PPAETAAXLVAL 398 (400)
T ss_dssp HHHHH-HHHHHHTSC--CHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHcCC--CHHHHHHHHHHh
Confidence 77554 444554443 567788888764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=4.2e-06 Score=91.73 Aligned_cols=93 Identities=14% Similarity=0.096 Sum_probs=59.8
Q ss_pred HcCCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHH
Q 003891 213 DRDNLDKAVECYQMALSI-----KPNFS---QSLNNLGVVYTVQGKMDAAAEMIEKAIAA-----NPTY---AEAYNNLG 276 (788)
Q Consensus 213 ~~g~~~eA~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~eA~~~l~kal~~-----~p~~---~~~~~~la 276 (788)
..|+|++|+..+++++++ .|+++ ..+.++|.+|..+|+|++|+.++++++++ .|++ ...+++||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346677777777777664 33443 35667777777777777777777777654 2333 44566777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh-----CCCChhh
Q 003891 277 VLYRDAGSISLAIDAYEQCLKI-----DPDSRNA 305 (788)
Q Consensus 277 ~~~~~~g~~~eA~~~~~~al~l-----~p~~~~a 305 (788)
.+|..+|++++|+.+|++|+++ .|+++..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 7777777777777777777664 5555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=3e-06 Score=93.01 Aligned_cols=87 Identities=9% Similarity=0.018 Sum_probs=45.0
Q ss_pred HHcCChHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHH
Q 003891 178 GEMLKFDMAIVFYELAFHF-----NPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPNF---SQSLNNL 241 (788)
Q Consensus 178 ~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~---~~~~~~l 241 (788)
..+|++++|+..++++++. .|++ ..++.++|.+|..+|+|++|+.++++++++ .+++ ...++++
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 3455555555555555543 1222 344555555555555555555555555543 2222 2245555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q 003891 242 GVVYTVQGKMDAAAEMIEKAIAA 264 (788)
Q Consensus 242 a~~~~~~g~~~eA~~~l~kal~~ 264 (788)
|.+|..+|++++|+.+|++|+++
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHH
Confidence 55555555555555555555543
|
| >4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii} | Back alignment and structure |
|---|
Probab=98.22 E-value=9.4e-07 Score=95.68 Aligned_cols=169 Identities=14% Similarity=0.071 Sum_probs=110.4
Q ss_pred CCCCCCCeEEEecCCCC-----cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHc-C-CC-CCcEEEc
Q 003891 520 PALTNGFITFGSFNNLA-----KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQL-G-LE-SLRVDLL 591 (788)
Q Consensus 520 ~~~~~~~~~f~~~~~~~-----K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~-g-i~-~~rv~~~ 591 (788)
.+++.+.+++.+.++.. |..+.+++++.++.+.. +..+++...+ . +++.+++. | +. .++|.+.
T Consensus 198 lgl~~~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~-~~~vv~p~~p----~----~~~~l~~~~~~~~~~~~v~l~ 268 (385)
T 4hwg_A 198 LSLTPKQYFLISSHREENVDVKNNLKELLNSLQMLIKEY-NFLIIFSTHP----R----TKKRLEDLEGFKELGDKIRFL 268 (385)
T ss_dssp TTCCTTSEEEEEECCC-----CHHHHHHHHHHHHHHHHH-CCEEEEEECH----H----HHHHHHTSGGGGGTGGGEEEC
T ss_pred cCCCcCCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcC-CeEEEEECCh----H----HHHHHHHHHHHhcCCCCEEEE
Confidence 34555566677777653 44568888888887765 6666654332 2 44555555 5 42 3689998
Q ss_pred CCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHH
Q 003891 592 PLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQ 671 (788)
Q Consensus 592 ~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~ 671 (788)
+... ..++..++..||+++..+ || .+.||+++|+|||++...+ .|.-. ...|-.-+|..|.++.++...+
T Consensus 269 ~~lg-~~~~~~l~~~adlvvt~S---Gg-v~~EA~alG~Pvv~~~~~t--er~e~---v~~G~~~lv~~d~~~i~~ai~~ 338 (385)
T 4hwg_A 269 PAFS-FTDYVKLQMNAFCILSDS---GT-ITEEASILNLPALNIREAH--ERPEG---MDAGTLIMSGFKAERVLQAVKT 338 (385)
T ss_dssp CCCC-HHHHHHHHHHCSEEEECC---TT-HHHHHHHTTCCEEECSSSC--SCTHH---HHHTCCEECCSSHHHHHHHHHH
T ss_pred cCCC-HHHHHHHHHhCcEEEECC---cc-HHHHHHHcCCCEEEcCCCc--cchhh---hhcCceEEcCCCHHHHHHHHHH
Confidence 8876 678899999999999433 44 4699999999999976532 12221 2336555565699999999999
Q ss_pred HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 003891 672 LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 709 (788)
Q Consensus 672 l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 709 (788)
|.+|+..++.|++...... ..-...++.++.++..+
T Consensus 339 ll~d~~~~~~m~~~~~~~~--g~g~aa~rI~~~l~~~~ 374 (385)
T 4hwg_A 339 ITEEHDNNKRTQGLVPDYN--EAGLVSKKILRIVLSYV 374 (385)
T ss_dssp HHTTCBTTBCCSCCCHHHH--TCCCHHHHHHHHHHHHH
T ss_pred HHhChHHHHHhhccCCCCC--CCChHHHHHHHHHHHHh
Confidence 9999877666554333210 11124566666666654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.20 E-value=1.2e-05 Score=69.40 Aligned_cols=75 Identities=17% Similarity=0.200 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHH
Q 003891 235 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-------PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 307 (788)
Q Consensus 235 ~~~~~~la~~~~~~g~~~eA~~~l~kal~~~-------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~ 307 (788)
+.-.+.+|..++..|+|..|+.+|++|++.. +....++..+|.++.++|++++|+.+++++++++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3344556666666666666666666665542 234566666777777777777777777777777777666655
Q ss_pred hH
Q 003891 308 NR 309 (788)
Q Consensus 308 ~~ 309 (788)
++
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 43
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=4.2e-06 Score=91.72 Aligned_cols=96 Identities=10% Similarity=0.069 Sum_probs=80.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHH
Q 003891 31 GTSLKLAGNTQDGIQKYYEALKI-----DPHY---APAYYNLGVVYSELMQYDTALGCYEKAALE-----RPMY---AEA 94 (788)
Q Consensus 31 g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~~-----~p~~---~~~ 94 (788)
.......|+|++|+..|++++++ .|++ ..++.++|.+|..+|+|++|+.+++++++. .|++ +..
T Consensus 305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 384 (433)
T 3qww_A 305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM 384 (433)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 44444568999999999999986 3444 567899999999999999999999999874 3444 567
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCcH
Q 003891 95 YCNMGVIYKNRGDLESAIACYERCLAV-----SPNFE 126 (788)
Q Consensus 95 ~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~ 126 (788)
+++||.+|..+|++++|+.+|++|+++ .|+++
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp 421 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHP 421 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 999999999999999999999999986 45555
|
| >2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} | Back alignment and structure |
|---|
Probab=98.18 E-value=3.3e-05 Score=84.92 Aligned_cols=165 Identities=12% Similarity=0.100 Sum_probs=107.8
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEE-EEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 003891 523 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRL-VVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 601 (788)
Q Consensus 523 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l-~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~ 601 (788)
+++.++|.++++......+.+....+.+.. ++.++ |+.|.+... +.+ . .+ +++|.+.++++ ..
T Consensus 253 ~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~-~~~~~~~~~g~~~~~----~~~----~--~~-~~~v~~~~~~~-~~--- 316 (424)
T 2iya_A 253 DGRPVLLIALGSAFTDHLDFYRTCLSAVDG-LDWHVVLSVGRFVDP----ADL----G--EV-PPNVEVHQWVP-QL--- 316 (424)
T ss_dssp SSCCEEEEECCSSSCCCHHHHHHHHHHHTT-CSSEEEEECCTTSCG----GGG----C--SC-CTTEEEESSCC-HH---
T ss_pred CCCCEEEEEcCCCCcchHHHHHHHHHHHhc-CCcEEEEEECCcCCh----HHh----c--cC-CCCeEEecCCC-HH---
Confidence 345688888888765556666655555654 44555 445543211 111 1 23 47899999987 33
Q ss_pred HhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC---CHHHHHHHHHHHhcCHHH
Q 003891 602 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTA 678 (788)
Q Consensus 602 ~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~ 678 (788)
..+..+|+|+. -+|.+|++||+++|||+|+.+-.. .....+..+...|..-.+.. +.++..+...++.+|++.
T Consensus 317 ~~l~~~d~~v~---~~G~~t~~Ea~~~G~P~i~~p~~~-dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~ 392 (424)
T 2iya_A 317 DILTKASAFIT---HAGMGSTMEALSNAVPMVAVPQIA-EQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVASDPGV 392 (424)
T ss_dssp HHHTTCSEEEE---CCCHHHHHHHHHTTCCEEECCCSH-HHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHHHHHCHHH
T ss_pred HHHhhCCEEEE---CCchhHHHHHHHcCCCEEEecCcc-chHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHHHcCHHH
Confidence 45677999984 367789999999999999987531 12334455666777554432 789999999999999988
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 679 LANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 679 ~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
++++++..+.. .. ....+..++.+|+..+
T Consensus 393 ~~~~~~~~~~~-~~--~~~~~~~~~~i~~~~~ 421 (424)
T 2iya_A 393 AERLAAVRQEI-RE--AGGARAAADILEGILA 421 (424)
T ss_dssp HHHHHHHHHHH-HT--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-Hh--cCcHHHHHHHHHHHHh
Confidence 77776655433 22 1345666777776643
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.17 E-value=1.5e-05 Score=68.71 Aligned_cols=76 Identities=24% Similarity=0.250 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 003891 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIK-------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 273 (788)
Q Consensus 201 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~ 273 (788)
+.-++.+|..++..++|..|+..|++|++.. .....++..+|.++.++|++++|+.++++++++.|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4455667777777777777777777776642 234567777777777777777777777777777777777766
Q ss_pred HHH
Q 003891 274 NLG 276 (788)
Q Consensus 274 ~la 276 (788)
+++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 665
|
| >2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.1e-05 Score=89.40 Aligned_cols=160 Identities=10% Similarity=0.039 Sum_probs=103.6
Q ss_pred CCCeEEEecCCCC-------cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCC
Q 003891 524 NGFITFGSFNNLA-------KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILL 596 (788)
Q Consensus 524 ~~~~~f~~~~~~~-------K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~ 596 (788)
+..++|.++++.. |....+++.+.+ . +.++++.+++.. .+.+ . ++ +++|.+.++++
T Consensus 266 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~----~-~~~~v~~~g~~~----~~~l----~--~~-~~~v~~~~~~~- 328 (441)
T 2yjn_A 266 ERRRVCLTLGISSRENSIGQVSIEELLGAVGD----V-DAEIIATFDAQQ----LEGV----A--NI-PDNVRTVGFVP- 328 (441)
T ss_dssp SSCEEEEEC----------CCSTTTTHHHHHT----S-SSEEEECCCTTT----TSSC----S--SC-CSSEEECCSCC-
T ss_pred CCCEEEEECCCCcccccChHHHHHHHHHHHHc----C-CCEEEEEECCcc----hhhh----c--cC-CCCEEEecCCC-
Confidence 4456677777653 555566655433 2 466666554311 1111 1 33 47899999987
Q ss_pred cHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC---CHHHHHHHHHHHh
Q 003891 597 NHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLA 673 (788)
Q Consensus 597 ~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~l~ 673 (788)
..+ .+..||+++. -+|..|++|||++|||+|+.+-.. .....+..+...|..-.+.. +.++..+...++.
T Consensus 329 ~~~---ll~~ad~~V~---~~G~~t~~Ea~~~G~P~i~~p~~~-dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll 401 (441)
T 2yjn_A 329 MHA---LLPTCAATVH---HGGPGSWHTAAIHGVPQVILPDGW-DTGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVL 401 (441)
T ss_dssp HHH---HGGGCSEEEE---CCCHHHHHHHHHTTCCEEECCCSH-HHHHHHHHHHHHTSEEECCTTTCCHHHHHHHHHHHH
T ss_pred HHH---HHhhCCEEEE---CCCHHHHHHHHHhCCCEEEeCCcc-cHHHHHHHHHHcCCEEEcccccCCHHHHHHHHHHHh
Confidence 343 4677999994 367789999999999999987521 11233455666777655542 7889999999999
Q ss_pred cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 003891 674 SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 710 (788)
Q Consensus 674 ~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 710 (788)
+|++.++++++..+.... ....+..++.+|+...
T Consensus 402 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 402 DDPAHRAGAARMRDDMLA---EPSPAEVVGICEELAA 435 (441)
T ss_dssp HCHHHHHHHHHHHHHHHT---SCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 999988888776654432 2357788888887654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=9.1e-06 Score=89.21 Aligned_cols=101 Identities=8% Similarity=-0.067 Sum_probs=83.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC--
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKI-----DPHY---APAYYNLGVVYSELMQYDTALGCYEKAALE-----RPMY-- 91 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~~-----~p~~-- 91 (788)
.......+..+|++++|+..++++++. .|++ ..++.++|.+|..+|+|++|+.+++++++. .|++
T Consensus 290 ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~ 369 (429)
T 3qwp_A 290 SLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV 369 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChH
Confidence 334445567889999999999999976 3444 568899999999999999999999999874 3444
Q ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCcHH
Q 003891 92 -AEAYCNMGVIYKNRGDLESAIACYERCLAV-----SPNFEI 127 (788)
Q Consensus 92 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~ 127 (788)
...++++|.+|..+|++++|+.+|++++++ .|+++.
T Consensus 370 ~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~ 411 (429)
T 3qwp_A 370 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSL 411 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 567999999999999999999999999976 566663
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00081 Score=75.27 Aligned_cols=159 Identities=9% Similarity=0.005 Sum_probs=131.0
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHhcC-CCCHHHHHHHH
Q 003891 140 GTKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLK---------FDMAIVFYELAFHFN-PHCAEACNNLG 208 (788)
Q Consensus 140 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~-p~~~~~~~~la 208 (788)
-..+.+.|+.++|++.|++..+.. .-+...|..+-.++...+. .++|.+.|++..... .-+...|..+.
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI 112 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGA 112 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 356678899999999999998764 2355667767666655443 688999999887653 23678899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Q 003891 209 VIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-PTYAEAYNNLGVLYRDAGSIS 286 (788)
Q Consensus 209 ~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~-p~~~~~~~~la~~~~~~g~~~ 286 (788)
..|.+.|++++|.++|++..+.. ..+...|..+-..|.+.|+.++|.+.+++..+.. .-+...|..+...|.+.|+.+
T Consensus 113 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d 192 (501)
T 4g26_A 113 RLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNAD 192 (501)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHH
Confidence 99999999999999999988763 3467889999999999999999999999998763 224778999999999999999
Q ss_pred HHHHHHHHHHhh
Q 003891 287 LAIDAYEQCLKI 298 (788)
Q Consensus 287 eA~~~~~~al~l 298 (788)
+|.+.+++..+.
T Consensus 193 ~A~~ll~~Mr~~ 204 (501)
T 4g26_A 193 KVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
|
| >1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5 | Back alignment and structure |
|---|
Probab=98.03 E-value=5e-05 Score=83.24 Aligned_cols=157 Identities=9% Similarity=-0.012 Sum_probs=98.5
Q ss_pred CeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcc
Q 003891 526 FITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS 605 (788)
Q Consensus 526 ~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~ 605 (788)
.++|.++++.. .....++...+.+...+.-.+|+.|.+.. . ..++ +++|.+.++++ ..+ .+.
T Consensus 239 ~~v~v~~Gs~~-~~~~~~~~~~~al~~~~~~~v~~~g~~~~--~----------~~~~-~~~v~~~~~~~-~~~---~l~ 300 (415)
T 1iir_A 239 PPVYLGFGSLG-APADAVRVAIDAIRAHGRRVILSRGWADL--V----------LPDD-GADCFAIGEVN-HQV---LFG 300 (415)
T ss_dssp CCEEEECC----CCHHHHHHHHHHHHHTTCCEEECTTCTTC--C----------CSSC-GGGEEECSSCC-HHH---HGG
T ss_pred CeEEEeCCCCC-CcHHHHHHHHHHHHHCCCeEEEEeCCCcc--c----------ccCC-CCCEEEeCcCC-hHH---HHh
Confidence 46777888765 44566666666666666444454454311 0 0133 37899999987 344 358
Q ss_pred cccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC---CHHHHHHHHHHHhcCHHHHHHH
Q 003891 606 LMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTALANL 682 (788)
Q Consensus 606 ~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~~~~~ 682 (788)
.||+|+. -+|.+|++||+++|||+|+++-. ......+..+...|..-.+.. +.++..+...++ +|++.++++
T Consensus 301 ~~d~~v~---~~G~~t~~Ea~~~G~P~i~~p~~-~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~~~~~~~ 375 (415)
T 1iir_A 301 RVAAVIH---HGGAGTTHVAARAGAPQILLPQM-ADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATA-LTPETHARA 375 (415)
T ss_dssp GSSEEEE---CCCHHHHHHHHHHTCCEEECCCS-TTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHH-TSHHHHHHH
T ss_pred hCCEEEe---CCChhHHHHHHHcCCCEEECCCC-CccHHHHHHHHHCCCcccCCcCCCCHHHHHHHHHHH-cCHHHHHHH
Confidence 8999994 36677999999999999998742 112234555667777655532 788998988899 998877777
Q ss_pred HHHHHHHhhcCCCCChHHHHHHHHHH
Q 003891 683 RMSLRDLMSKSPVCDGQNFALGLEST 708 (788)
Q Consensus 683 r~~~~~~~~~~~~~~~~~~~~~~e~~ 708 (788)
++..+.. . ..-..+..++.+|+.
T Consensus 376 ~~~~~~~-~--~~~~~~~~~~~i~~~ 398 (415)
T 1iir_A 376 TAVAGTI-R--TDGAAVAARLLLDAV 398 (415)
T ss_dssp HHHHHHS-C--SCHHHHHHHHHHHHH
T ss_pred HHHHHHH-h--hcChHHHHHHHHHHH
Confidence 6655432 1 122334455555554
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0014 Score=73.27 Aligned_cols=182 Identities=10% Similarity=0.032 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhhh--hhhhcCCHHHHHHHHHHHHHhCC-CCHH
Q 003891 94 AYCNMGVIYKNRGDLESAIACYERCLAVS--PNFEIAKNNMAIALTDLGT--KVKLEGDINQGVAYYKKALYYNW-HYAD 168 (788)
Q Consensus 94 ~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~lg~--~~~~~g~~~~A~~~~~~al~~~p-~~~~ 168 (788)
.+..+-..+.+.|+.++|++.|+++.+.. |+ ...+..+..++...+. .....+..++|.+.|++..+..- -+..
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35556677888999999999999887753 43 2233333322222111 11233458899999999887642 3677
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYT 246 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~la~~~~ 246 (788)
.|..+...|.+.|++++|.+++++..+.. .-+...|..+-..|.+.|+.++|.++|++..+.. ..+...|..+...|.
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999999988753 3358889999999999999999999999998763 335778999999999
Q ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Q 003891 247 VQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGV 277 (788)
Q Consensus 247 ~~g~~~eA~~~l~kal~~--~p~~~~~~~~la~ 277 (788)
+.|+.++|.+++++..+. .|+ ...+..+-.
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~ 218 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVS-KSTFDMIEE 218 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBC-HHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcC-HHHHHHHHH
Confidence 999999999999998775 344 334443433
|
| >3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=4.1e-05 Score=81.00 Aligned_cols=132 Identities=14% Similarity=0.094 Sum_probs=92.4
Q ss_pred CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc
Q 003891 525 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 604 (788)
Q Consensus 525 ~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~ 604 (788)
+.++++-++++.|. ..+..+ .|+.+|+|+|.|... .+ .+|.|.|+++ .++....+
T Consensus 177 ~~~~i~yaG~l~k~--~~L~~l------~~~~~f~ivG~G~~~--------------~l--~nV~f~G~~~-~~el~~~l 231 (339)
T 3rhz_A 177 LKREIHFPGNPERF--SFVKEW------KYDIPLKVYTWQNVE--------------LP--QNVHKINYRP-DEQLLMEM 231 (339)
T ss_dssp EEEEEEECSCTTTC--GGGGGC------CCSSCEEEEESCCCC--------------CC--TTEEEEECCC-HHHHHHHH
T ss_pred CCcEEEEeCCcchh--hHHHhC------CCCCeEEEEeCCccc--------------Cc--CCEEEeCCCC-HHHHHHHH
Confidence 44677888888873 222211 389999999987321 23 2899999998 78888888
Q ss_pred ccccEeecCC-C-------CCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCH
Q 003891 605 SLMDISLDTF-P-------YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDV 676 (788)
Q Consensus 605 ~~~Dv~Ld~~-~-------~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~ 676 (788)
+.+|+.|-.. + ++....+.|+|++|+|||+....... .++..-|+ ++++++.++.++....+ ++
T Consensus 232 ~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~~~~~-----~~v~~~~~-G~~~~~~~e~~~~i~~l--~~ 303 (339)
T 3rhz_A 232 SQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEGIANQ-----ELIENNGL-GWIVKDVEEAIMKVKNV--NE 303 (339)
T ss_dssp HTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETTCTTT-----HHHHHHTC-EEEESSHHHHHHHHHHC--CH
T ss_pred HhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccChhHH-----HHHHhCCe-EEEeCCHHHHHHHHHHh--CH
Confidence 7777776541 1 34467899999999999985533222 23444344 46678899998888876 46
Q ss_pred HHHHHHHHHHHHH
Q 003891 677 TALANLRMSLRDL 689 (788)
Q Consensus 677 ~~~~~~r~~~~~~ 689 (788)
+.+++|+++.++.
T Consensus 304 ~~~~~m~~na~~~ 316 (339)
T 3rhz_A 304 DEYIELVKNVRSF 316 (339)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7789999988765
|
| >1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5 | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00012 Score=80.20 Aligned_cols=138 Identities=7% Similarity=-0.061 Sum_probs=88.8
Q ss_pred CeEEEecCCCCc-CCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhc
Q 003891 526 FITFGSFNNLAK-ITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 604 (788)
Q Consensus 526 ~~~f~~~~~~~K-~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~ 604 (788)
.++|.++++... .....++...+.+...+--.+|..|.+.. . . ..+ ++++.+.++++ ..+ .+
T Consensus 238 ~~v~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~--~----~------~~~-~~~v~~~~~~~-~~~---ll 300 (416)
T 1rrv_A 238 PPVHIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTEL--V----L------PDD-RDDCFAIDEVN-FQA---LF 300 (416)
T ss_dssp CCEEECCTTCCSHHHHHHHHHHHHHHHHTTCCEEEECTTTTC--C----C------SCC-CTTEEEESSCC-HHH---HG
T ss_pred CeEEEecCCCCccChHHHHHHHHHHHHHCCCeEEEEeCCccc--c----c------cCC-CCCEEEeccCC-hHH---Hh
Confidence 567778887643 23344555555555555334444454311 0 0 133 37899999986 444 45
Q ss_pred ccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc---CCHHHHHHHHHHHhcCHHHHHH
Q 003891 605 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVTALAN 681 (788)
Q Consensus 605 ~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia---~~~~~y~~~a~~l~~d~~~~~~ 681 (788)
..||+|+. -+|..|++||+++|||+|+++-.. .....+..+...|..-.+. -+.++..+...++ .|++.+++
T Consensus 301 ~~~d~~v~---~~G~~t~~Ea~~~G~P~i~~p~~~-dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~~~~~~ 375 (416)
T 1rrv_A 301 RRVAAVIH---HGSAGTEHVATRAGVPQLVIPRNT-DQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTV-LAPETRAR 375 (416)
T ss_dssp GGSSEEEE---CCCHHHHHHHHHHTCCEEECCCSB-THHHHHHHHHHHTSEEECSSSCCCHHHHHHHHHHH-TSHHHHHH
T ss_pred ccCCEEEe---cCChhHHHHHHHcCCCEEEccCCC-CcHHHHHHHHHCCCccCCCCCCCCHHHHHHHHHHh-hCHHHHHH
Confidence 77999994 467779999999999999987521 1223445566677765553 3788898888899 99876666
Q ss_pred HHHH
Q 003891 682 LRMS 685 (788)
Q Consensus 682 ~r~~ 685 (788)
+++.
T Consensus 376 ~~~~ 379 (416)
T 1rrv_A 376 AEAV 379 (416)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
|
| >3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00027 Score=77.67 Aligned_cols=148 Identities=11% Similarity=0.068 Sum_probs=97.1
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 003891 523 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 602 (788)
Q Consensus 523 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 602 (788)
+++.++|.||++.....++.+...+.-|...+.-.||..+.. ....+-+.+.+. + ++|+.+.++++ +.+.+
T Consensus 271 ~~~~vVyvsfGS~~~~~~~~~~el~~~l~~~~~~flw~~~~~-----~~~~lp~~~~~~-~-~~~~~vv~w~P-q~~vL- 341 (454)
T 3hbf_A 271 ENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGD-----PKEKLPKGFLER-T-KTKGKIVAWAP-QVEIL- 341 (454)
T ss_dssp CTTCEEEEECCSSCCCCHHHHHHHHHHHHHHCCCEEEECCSC-----HHHHSCTTHHHH-T-TTTEEEESSCC-HHHHH-
T ss_pred CCCceEEEecCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc-----chhcCCHhHHhh-c-CCceEEEeeCC-HHHHH-
Confidence 456889999999988888888888888888777788887653 111121111111 2 37888889987 44444
Q ss_pred hccccc--EeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhh-hCCccccc---CCHHHHHHHHHHHhcCH
Q 003891 603 AYSLMD--ISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK-VGLKHLIA---KNEDEYVQLALQLASDV 676 (788)
Q Consensus 603 ~~~~~D--v~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~-~gl~~~ia---~~~~~y~~~a~~l~~d~ 676 (788)
..+| +|+ ..+|.+|++||+++|||+|+++-. .-....+..+.. +|..-.+. -+.++..+...++..|+
T Consensus 342 --~h~~v~~fv---tH~G~~S~~Eal~~GvP~i~~P~~-~DQ~~Na~~v~~~~g~Gv~l~~~~~~~~~l~~av~~ll~~~ 415 (454)
T 3hbf_A 342 --KHSSVGVFL---THSGWNSVLECIVGGVPMISRPFF-GDQGLNTILTESVLEIGVGVDNGVLTKESIKKALELTMSSE 415 (454)
T ss_dssp --HSTTEEEEE---ECCCHHHHHHHHHHTCCEEECCCS-TTHHHHHHHHHTTSCSEEECGGGSCCHHHHHHHHHHHHSSH
T ss_pred --hhcCcCeEE---ecCCcchHHHHHHcCCCEecCccc-ccHHHHHHHHHHhhCeeEEecCCCCCHHHHHHHHHHHHCCC
Confidence 3355 776 247788999999999999998842 113334455555 46654442 36788887777888774
Q ss_pred HHHHHHHHHH
Q 003891 677 TALANLRMSL 686 (788)
Q Consensus 677 ~~~~~~r~~~ 686 (788)
..+.+|+++
T Consensus 416 -~~~~~r~~a 424 (454)
T 3hbf_A 416 -KGGIMRQKI 424 (454)
T ss_dssp -HHHHHHHHH
T ss_pred -hHHHHHHHH
Confidence 233444444
|
| >2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00013 Score=80.75 Aligned_cols=151 Identities=15% Similarity=0.081 Sum_probs=98.2
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 003891 523 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 602 (788)
Q Consensus 523 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 602 (788)
+++.++|.||+......++.+...++.+...+.-.+|..|.... +...+.+.++. ++++.+.++++ +.+.+
T Consensus 269 ~~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~~-~~l~~~~~~~~------~~~~~v~~w~p-q~~vL- 339 (456)
T 2c1x_A 269 KPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKAR-VHLPEGFLEKT------RGYGMVVPWAP-QAEVL- 339 (456)
T ss_dssp CTTCEEEEECCSSCCCCHHHHHHHHHHHHHHTCCEEEECCGGGG-GGSCTTHHHHH------TTTEEEESCCC-HHHHH-
T ss_pred CCcceEEEecCccccCCHHHHHHHHHHHHhcCCeEEEEECCcch-hhCCHHHHhhc------CCceEEecCCC-HHHHh-
Confidence 35678899999887777777776666676666566777664310 01111222221 36888889987 33332
Q ss_pred hcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhh-CCccccc---CCHHHHHHHHHHHhcCHHH
Q 003891 603 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV-GLKHLIA---KNEDEYVQLALQLASDVTA 678 (788)
Q Consensus 603 ~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~-gl~~~ia---~~~~~y~~~a~~l~~d~~~ 678 (788)
....+|+|+. .+|.+|++||+++|||+|+++-. .-....+..+... |..-.+. -+.++..+...++..|++
T Consensus 340 ~h~~~~~fvt---h~G~~S~~Eal~~GvP~i~~P~~-~dQ~~Na~~l~~~~g~g~~l~~~~~~~~~l~~~i~~ll~~~~- 414 (456)
T 2c1x_A 340 AHEAVGAFVT---HCGWNSLWESVAGGVPLICRPFF-GDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQEK- 414 (456)
T ss_dssp TSTTEEEEEE---CCCHHHHHHHHHHTCCEEECCCS-TTHHHHHHHHHHTSCCEEECGGGSCCHHHHHHHHHHHHHSHH-
T ss_pred cCCcCCEEEe---cCCcchHHHHHHhCceEEecCCh-hhHHHHHHHHHHHhCeEEEecCCCcCHHHHHHHHHHHHCCCc-
Confidence 2236899982 48888999999999999999852 2233455566665 7665443 267888888888888875
Q ss_pred HHHHHHHHH
Q 003891 679 LANLRMSLR 687 (788)
Q Consensus 679 ~~~~r~~~~ 687 (788)
...+|++++
T Consensus 415 ~~~~r~~a~ 423 (456)
T 2c1x_A 415 GKKLRENLR 423 (456)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 445555544
|
| >3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00023 Score=77.65 Aligned_cols=158 Identities=8% Similarity=-0.052 Sum_probs=99.1
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 603 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 603 (788)
+..+++.++++... ..+.++...+.+...+--.+|..|.+. . ...+. +++|.+.++++ ..+.+
T Consensus 220 ~~~~Vlv~~Gs~~~-~~~~~~~~~~al~~~~~~vv~~~g~~~-~-----------~~~~~-~~~v~~~~~~~-~~~ll-- 282 (404)
T 3h4t_A 220 GSPPVYVGFGSGPA-PAEAARVAIEAVRAQGRRVVLSSGWAG-L-----------GRIDE-GDDCLVVGEVN-HQVLF-- 282 (404)
T ss_dssp SSCCEEECCTTSCC-CTTHHHHHHHHHHHTTCCEEEECTTTT-C-----------CCSSC-CTTEEEESSCC-HHHHG--
T ss_pred CCCeEEEECCCCCC-cHHHHHHHHHHHHhCCCEEEEEeCCcc-c-----------ccccC-CCCEEEecCCC-HHHHH--
Confidence 44567888887765 556666666666666544444433221 0 01123 47899999986 44444
Q ss_pred cccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccC---CHHHHHHHHHHHhcCHHHH
Q 003891 604 YSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTAL 679 (788)
Q Consensus 604 ~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~~ 679 (788)
..||+++ . +|..|+.||+++|||+|.++-. ......+..+...|..-.+.. +.++..+...++.+ ++.+
T Consensus 283 -~~~d~~v----~~gG~~t~~Eal~~GvP~v~~p~~-~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~-~~~~ 355 (404)
T 3h4t_A 283 -GRVAAVV----HHGGAGTTTAVTRAGAPQVVVPQK-ADQPYYAGRVADLGVGVAHDGPTPTVESLSAALATALT-PGIR 355 (404)
T ss_dssp -GGSSEEE----ECCCHHHHHHHHHHTCCEEECCCS-TTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHHTS-HHHH
T ss_pred -hhCcEEE----ECCcHHHHHHHHHcCCCEEEcCCc-ccHHHHHHHHHHCCCEeccCcCCCCHHHHHHHHHHHhC-HHHH
Confidence 5699999 5 5557999999999999998632 112234556677787655532 78899999889888 8766
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 003891 680 ANLRMSLRDLMSKSPVCDGQNFALGLESTY 709 (788)
Q Consensus 680 ~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 709 (788)
+++++..+ .+. . -..++.++.+|+.+
T Consensus 356 ~~~~~~~~-~~~--~-~~~~~~~~~i~~~~ 381 (404)
T 3h4t_A 356 ARAAAVAG-TIR--T-DGTTVAAKLLLEAI 381 (404)
T ss_dssp HHHHHHHT-TCC--C-CHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHh--h-hHHHHHHHHHHHHH
Confidence 66555432 211 1 23445555555544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00016 Score=63.36 Aligned_cols=92 Identities=12% Similarity=0.039 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 216 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA---AAEMIEKAIAAN-P-TYAEAYNNLGVLYRDAGSISLAID 290 (788)
Q Consensus 216 ~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e---A~~~l~kal~~~-p-~~~~~~~~la~~~~~~g~~~eA~~ 290 (788)
....+.+.|.+.+..++.+.++.+++|+++.+..+... ++.+++..+... | ..-+.++.||..+.++|+|++|..
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34455666666666666777777777777777766555 777777777665 3 345677888888888888888888
Q ss_pred HHHHHHhhCCCChhhHH
Q 003891 291 AYEQCLKIDPDSRNAGQ 307 (788)
Q Consensus 291 ~~~~al~l~p~~~~a~~ 307 (788)
+++.++++.|+|..+..
T Consensus 96 ~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhCCCCHHHHH
Confidence 88888888888777643
|
| >2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00038 Score=77.69 Aligned_cols=152 Identities=14% Similarity=0.137 Sum_probs=98.3
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC-C-H-HHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC-C-D-SVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 600 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~-~-~-~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~ 600 (788)
+..++|.||++.....+..+...++-+...+.-.+|..+.... + . ...+.+.++. ++++.+.++++ +.+.
T Consensus 294 ~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~------~~~~~v~~~~p-q~~~ 366 (482)
T 2pq6_A 294 PGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEI------ADRGLIASWCP-QDKV 366 (482)
T ss_dssp TTCEEEEECCSSSCCCHHHHHHHHHHHHHTTCEEEEECCGGGSTTTGGGSCHHHHHHH------TTTEEEESCCC-HHHH
T ss_pred CCceEEEecCCcccCCHHHHHHHHHHHHhcCCcEEEEEcCCccccccccCcHhHHHhc------CCCEEEEeecC-HHHH
Confidence 4568899999887667776777777777777666677654310 0 0 0122333322 37888899987 4433
Q ss_pred HHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHh-hhCCccccc--CCHHHHHHHHHHHhcCHH
Q 003891 601 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT-KVGLKHLIA--KNEDEYVQLALQLASDVT 677 (788)
Q Consensus 601 ~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~-~~gl~~~ia--~~~~~y~~~a~~l~~d~~ 677 (788)
+ ....+|+|+. .+|.+|++||+++|||+|+++-. ......+..+. ..|..-.+. -+.++..+...++..|++
T Consensus 367 L-~h~~~~~~vt---h~G~~s~~Eal~~GvP~i~~P~~-~dQ~~na~~~~~~~G~g~~l~~~~~~~~l~~~i~~ll~~~~ 441 (482)
T 2pq6_A 367 L-NHPSIGGFLT---HCGWNSTTESICAGVPMLCWPFF-ADQPTDCRFICNEWEIGMEIDTNVKREELAKLINEVIAGDK 441 (482)
T ss_dssp H-TSTTEEEEEE---CCCHHHHHHHHHHTCCEEECCCS-TTHHHHHHHHHHTSCCEEECCSSCCHHHHHHHHHHHHTSHH
T ss_pred h-cCCCCCEEEe---cCCcchHHHHHHcCCCEEecCcc-cchHHHHHHHHHHhCEEEEECCCCCHHHHHHHHHHHHcCCc
Confidence 2 2244566872 48888999999999999999853 22334455454 577765553 378888888888888886
Q ss_pred HHHHHHHHHHH
Q 003891 678 ALANLRMSLRD 688 (788)
Q Consensus 678 ~~~~~r~~~~~ 688 (788)
.+.+|+++++
T Consensus 442 -~~~~r~~a~~ 451 (482)
T 2pq6_A 442 -GKKMKQKAME 451 (482)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHHHH
Confidence 3555555543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00073 Score=59.23 Aligned_cols=86 Identities=8% Similarity=-0.038 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 187 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK---AVECYQMALSIK-P-NFSQSLNNLGVVYTVQGKMDAAAEMIEKA 261 (788)
Q Consensus 187 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~eA~~~l~ka 261 (788)
.+.|.+.+..++....+.+++|+++.+..+..+ ++.+++..+..+ | ..-+.++.+|..+++.|+|++|..+++.+
T Consensus 21 ~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~l 100 (126)
T 1nzn_A 21 EKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL 100 (126)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333333333334444444444444444443333 444444444433 2 22334555555555555555555555555
Q ss_pred HHhCCCCHHHH
Q 003891 262 IAANPTYAEAY 272 (788)
Q Consensus 262 l~~~p~~~~~~ 272 (788)
++..|++..+.
T Consensus 101 L~~eP~n~QA~ 111 (126)
T 1nzn_A 101 LQTEPQNNQAK 111 (126)
T ss_dssp HHHCTTCHHHH
T ss_pred HHhCCCCHHHH
Confidence 55555554443
|
| >2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0022 Score=71.01 Aligned_cols=139 Identities=14% Similarity=0.091 Sum_probs=89.2
Q ss_pred CCCeEEEecCCCC-cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 003891 524 NGFITFGSFNNLA-KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 602 (788)
Q Consensus 524 ~~~~~f~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 602 (788)
++.++|.||++.. .++++.+...++-|...+.-.+|..+.+ .+...+.+.++... ++++.+.++++ +.+.+
T Consensus 275 ~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~--~~~l~~~~~~~~~~----~~~~~v~~w~p-q~~vL- 346 (463)
T 2acv_A 275 DKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAE--KKVFPEGFLEWMEL----EGKGMICGWAP-QVEVL- 346 (463)
T ss_dssp TTCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCC--GGGSCTTHHHHHHH----HCSEEEESSCC-HHHHH-
T ss_pred CCceEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEECCC--cccCChhHHHhhcc----CCCEEEEccCC-HHHHh-
Confidence 4568899999888 7787777777777777666666776642 00011122222210 25778888887 33332
Q ss_pred hcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHH-HhhhCCccccc---------CCHHHHHHHHHHH
Q 003891 603 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSL-LTKVGLKHLIA---------KNEDEYVQLALQL 672 (788)
Q Consensus 603 ~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~-l~~~gl~~~ia---------~~~~~y~~~a~~l 672 (788)
....+|+|+. -+|.+|++||+++|||+|+++-. ......+.. ....|..-.+. -+.++..+...++
T Consensus 347 ~h~~~~~fvt---h~G~~s~~Eal~~GvP~i~~P~~-~dQ~~Na~~lv~~~g~g~~l~~~~~~~~~~~~~~~l~~ai~~l 422 (463)
T 2acv_A 347 AHKAIGGFVS---HCGWNSILESMWFGVPILTWPIY-AEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDL 422 (463)
T ss_dssp HSTTEEEEEE---CCCHHHHHHHHHTTCCEEECCCS-TTHHHHHHHHHHTSCCEEESCSSCCTTCCCCCHHHHHHHHHHH
T ss_pred CCCccCeEEe---cCCchhHHHHHHcCCCeeeccch-hhhHHHHHHHHHHcCeEEEEecccCCCCccccHHHHHHHHHHH
Confidence 2346899982 48888999999999999999852 122334455 36777765551 2567777777777
Q ss_pred hc
Q 003891 673 AS 674 (788)
Q Consensus 673 ~~ 674 (788)
.+
T Consensus 423 l~ 424 (463)
T 2acv_A 423 MD 424 (463)
T ss_dssp TC
T ss_pred Hh
Confidence 76
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0024 Score=57.12 Aligned_cols=108 Identities=11% Similarity=0.071 Sum_probs=75.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 197 NPHCAEACNNLGVIYKDRDNL------DKAVECYQMALSIKPNF--------SQSLNNLGVVYTVQGKMDAAAEMIEKAI 262 (788)
Q Consensus 197 ~p~~~~~~~~la~~~~~~g~~------~eA~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~eA~~~l~kal 262 (788)
.|.+++.|........+.|+. ++-++.|++|+..-|.. ...|...|.. ...++.++|.+.|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 455566666666655555665 55666666666554432 2345555544 45578888888888888
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhh
Q 003891 263 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 305 (788)
Q Consensus 263 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a 305 (788)
++....+.+|...|+...++|+..+|.+.+.+++.+.|.....
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 8877778888888888888888888888888888888875543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.002 Score=57.70 Aligned_cols=109 Identities=17% Similarity=0.119 Sum_probs=93.4
Q ss_pred hCCCCHHHHHHHHHHHHHcCCh------HHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 162 YNWHYADAMYNLGVAYGEMLKF------DMAIVFYELAFHFNPH--------CAEACNNLGVIYKDRDNLDKAVECYQMA 227 (788)
Q Consensus 162 ~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~eA~~~~~~a 227 (788)
..|++++.|........+.|+. ++-++.|++++..-|. ....|...|.. ...++.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 5789999999999999988999 8999999999987654 24566667755 5669999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 003891 228 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 271 (788)
Q Consensus 228 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~ 271 (788)
++++...+.+|...|..-..+|+..+|.+.+.+++.+.|...+.
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 99988889999999999999999999999999999999886554
|
| >2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0033 Score=69.91 Aligned_cols=137 Identities=18% Similarity=0.100 Sum_probs=87.1
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC------------C---HHHHHHHHHHHHHcCCCCCc-
Q 003891 524 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC------------C---DSVRHRFLSTLEQLGLESLR- 587 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~------------~---~~~~~~l~~~~~~~gi~~~r- 587 (788)
++.++|.||++.....++.+...++-+...+.-.||.++.+.. . +...+++.++. . +|
T Consensus 267 ~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-----~-~~g 340 (480)
T 2vch_A 267 LGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERT-----K-KRG 340 (480)
T ss_dssp TTCEEEEECTTTCCCCHHHHHHHHHHHHHTTCEEEEEECCCCSSTTTTTTCC--CSCGGGGSCTTHHHHT-----T-TTE
T ss_pred CCceEEEecccccCCCHHHHHHHHHHHHhcCCcEEEEECCccccccccccccccccchhhhcCHHHHHHh-----C-CCe
Confidence 4568899999988788888888888888877777777764321 0 01122333221 2 33
Q ss_pred EEEcCCcCCcHHHHHhccccc--EeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHH-hhhCCccccc-----
Q 003891 588 VDLLPLILLNHDHMQAYSLMD--ISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL-TKVGLKHLIA----- 659 (788)
Q Consensus 588 v~~~~~~~~~~~~~~~~~~~D--v~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l-~~~gl~~~ia----- 659 (788)
+++.+++| +.+. +..+| +|+ ..+|.+|++||+++|||+|+++-. .-....+..+ ..+|+.-.+.
T Consensus 341 ~~v~~w~P-q~~v---L~h~~v~~fv---tHgG~~S~~Eal~~GvP~i~~P~~-~DQ~~na~~l~~~~G~g~~l~~~~~~ 412 (480)
T 2vch_A 341 FVIPFWAP-QAQV---LAHPSTGGFL---THCGWNSTLESVVSGIPLIAWPLY-AEQKMNAVLLSEDIRAALRPRAGDDG 412 (480)
T ss_dssp EEEESCCC-HHHH---HHSTTEEEEE---ECCCHHHHHHHHHHTCCEEECCCS-TTHHHHHHHHHHTTCCEECCCCCTTS
T ss_pred EEEeCccC-HHHH---hCCCCcCeEE---ecccchhHHHHHHcCCCEEecccc-ccchHHHHHHHHHhCeEEEeecccCC
Confidence 34445876 4443 44455 566 247888999999999999999852 2233444454 5667654442
Q ss_pred -CCHHHHHHHHHHHhc
Q 003891 660 -KNEDEYVQLALQLAS 674 (788)
Q Consensus 660 -~~~~~y~~~a~~l~~ 674 (788)
-+.++..+...++..
T Consensus 413 ~~~~~~l~~av~~vl~ 428 (480)
T 2vch_A 413 LVRREEVARVVKGLME 428 (480)
T ss_dssp CCCHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHhc
Confidence 256777777777776
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.004 Score=57.06 Aligned_cols=132 Identities=17% Similarity=0.089 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHH
Q 003891 169 AMYNLGVAYGEMLKFDMAIVFYELAFHFN---PHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKP---NFSQ 236 (788)
Q Consensus 169 ~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p---~~~~ 236 (788)
+++.-...+...|.|+.|+-....++... ++- ..++..+|..++..++|..|...|+++++... ....
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45566677788888988888888866553 331 34778888888888888888888888876532 1111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhh
Q 003891 237 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNY 315 (788)
Q Consensus 237 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~ 315 (788)
....++. ... ...... .+.+.+..+.++.||.++|++++|+..++.. -+.......|++++..|
T Consensus 102 ~~~~~~~----~ss-------~p~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I---p~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 102 VRPSTGN----SAS-------TPQSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI---PSRQRTPKINMLLANLY 165 (167)
T ss_dssp --------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS---CGGGCCHHHHHHHHHHC
T ss_pred ccccccc----cCC-------Cccccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC---CchhcCHHHHHHHHHHh
Confidence 1001100 000 000011 1334678888999999999999999887653 23334455666666554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.012 Score=52.44 Aligned_cols=76 Identities=12% Similarity=0.089 Sum_probs=64.8
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHH
Q 003891 232 PNFSQSLNNLGVVYTVQGKM---DAAAEMIEKAIAANPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 307 (788)
Q Consensus 232 p~~~~~~~~la~~~~~~g~~---~eA~~~l~kal~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~ 307 (788)
....++.+++|+++.+..+. .+++.+++..+...|. .-+.++.||..+.++|+|++|..+.+.+++..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45678889999999887754 4788899999988884 5678899999999999999999999999999999988753
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0056 Score=56.09 Aligned_cols=92 Identities=14% Similarity=0.035 Sum_probs=75.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------C--
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---------APAYYNLGVVYSELMQYDTALGCYEKAALER------P-- 89 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~------p-- 89 (788)
++.....++..|.|+.|+-....++....++ ..++..+|..++..++|..|...|+++++.. +
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 6677788899999999999999977764322 3488999999999999999999999997631 1
Q ss_pred -----------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 003891 90 -----------------MYAEAYCNMGVIYKNRGDLESAIACYERC 118 (788)
Q Consensus 90 -----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a 118 (788)
...++.+.++.||.+.+++++|+..++..
T Consensus 103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 11268899999999999999999998764
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.37 Score=54.73 Aligned_cols=124 Identities=9% Similarity=-0.044 Sum_probs=83.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 003891 173 LGVAYGEMLKFDMAIVFYELAFHFNPHCAE----ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 248 (788)
Q Consensus 173 la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 248 (788)
.+.......+.+.|...+.+..+...-+.. ....++.-+...+...++...+.+......+ ......++......
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~r~Alr~ 298 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-TSLIERRVRMALGT 298 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC-hHHHHHHHHHHHHC
Confidence 344445556888999988877554332322 2223333333445466777788776654443 33333444445577
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003891 249 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 297 (788)
Q Consensus 249 g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 297 (788)
|+++.|..++++.-..........+.+|..+..+|+.++|..+|+++.+
T Consensus 299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999999876554445678899999999999999999999999975
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.012 Score=51.75 Aligned_cols=75 Identities=12% Similarity=0.090 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHH
Q 003891 233 NFSQSLNNLGVVYTVQGKM---DAAAEMIEKAIAANPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 307 (788)
Q Consensus 233 ~~~~~~~~la~~~~~~g~~---~eA~~~l~kal~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~ 307 (788)
-.+.+.+++|+++.+..+. .+++.+++..++..|. .-+.++.||..+.++|+|++|..+.+.++++.|+|..+..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 3567888888888877654 4688888888888774 4678888888899999999999999999999998887754
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.49 Score=54.72 Aligned_cols=112 Identities=13% Similarity=0.062 Sum_probs=76.2
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCC----------HHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI--------DPHY----------APAYYN 63 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~~~~~ 63 (788)
|++.+++..+.+|..... ++.++.. .......+--+|++...+.++. .+.+ ...+..
T Consensus 268 a~~~le~L~~~~p~~~~~---~~~~~i~--~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~ 342 (754)
T 4gns_B 268 TIDYLKGLTKKDPIHDIY---YKTAMIT--ILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNI 342 (754)
T ss_dssp HHHHHHHHHHHCGGGHHH---HHHHHHH--HHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCchhHH---HHHHHHH--HHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHH
Confidence 456677777777654321 1111111 1111112334677777777642 2222 234556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 003891 64 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 118 (788)
Q Consensus 64 lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 118 (788)
.+..+...|+|+-|+++.++++...|.....|+.|+.+|..+|+|+.|+-.++.+
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 6777888999999999999999999999999999999999999999999877665
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.077 Score=47.18 Aligned_cols=76 Identities=8% Similarity=-0.033 Sum_probs=66.9
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHH
Q 003891 55 PHYAPAYYNLGVVYSELMQY---DTALGCYEKAALERPM-YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 130 (788)
Q Consensus 55 p~~~~~~~~lg~~~~~~g~~---~~A~~~~~kal~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 130 (788)
.-...+.+++|.++....+. .+++.+++..+...|. .-++++.+|..+++.|+|++|.++.+.+++..|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45788999999999988765 5799999999998884 5789999999999999999999999999999999976543
|
| >1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.02 Score=60.55 Aligned_cols=100 Identities=10% Similarity=-0.000 Sum_probs=60.0
Q ss_pred CCcCCH--HHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcC--CCCCcEEEcCCcCCcHHHHHhcccccEe
Q 003891 535 LAKITP--KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLG--LESLRVDLLPLILLNHDHMQAYSLMDIS 610 (788)
Q Consensus 535 ~~K~~~--~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~g--i~~~rv~~~~~~~~~~~~~~~~~~~Dv~ 610 (788)
..|.-| .+.++...+.++ +.++++.|.+ ..++...+..+..+ ....-+.+.|... ..+..+.++.||++
T Consensus 193 ~~k~wp~~~~~~l~~~L~~~--~~~vvl~g~~----~e~~~~~~i~~~~~~~~~~~~~~l~g~~s-l~e~~ali~~a~l~ 265 (348)
T 1psw_A 193 PAKRWPHYHYAELAKQLIDE--GYQVVLFGSA----KDHEAGNEILAALNTEQQAWCRNLAGETQ-LDQAVILIAACKAI 265 (348)
T ss_dssp GGGSCCHHHHHHHHHHHHHT--TCEEEECCCG----GGHHHHHHHHTTSCHHHHTTEEECTTTSC-HHHHHHHHHTSSEE
T ss_pred ccCCCCHHHHHHHHHHHHHC--CCeEEEEeCh----hhHHHHHHHHHhhhhccccceEeccCcCC-HHHHHHHHHhCCEE
Confidence 456665 444444334333 6788887765 22322222221111 0112345667654 68899999999999
Q ss_pred ecCCCCCCchhHHHHhhhCCceeecCCCccCccch
Q 003891 611 LDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 645 (788)
Q Consensus 611 Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 645 (788)
+-.- .|+..+ |.++|+|+|++-|.+...|.+
T Consensus 266 I~~D---sg~~Hl-Aaa~g~P~v~lfg~t~~~~~~ 296 (348)
T 1psw_A 266 VTND---SGLMHV-AAALNRPLVALYGPSSPDFTP 296 (348)
T ss_dssp EEES---SHHHHH-HHHTTCCEEEEESSSCTTSSC
T ss_pred EecC---CHHHHH-HHHcCCCEEEEECCCCccccC
Confidence 8432 344444 888999999999987766654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.034 Score=48.79 Aligned_cols=74 Identities=8% Similarity=-0.017 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003891 201 AEACNNLGVIYKDRDNL---DKAVECYQMALSIKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 274 (788)
Q Consensus 201 ~~~~~~la~~~~~~g~~---~eA~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~ 274 (788)
..+.+++|+++.+..+. .+++.+++..++.+|. .-+.++.+|..+.+.|+|++|.++.+.+++..|++..+...
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 45555566555555433 3456666666655553 34566666666666666666666666666666666554433
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.45 Score=50.66 Aligned_cols=94 Identities=14% Similarity=-0.002 Sum_probs=68.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCH----HH
Q 003891 171 YNLGVAYGEMLKFDMAIVFYELAFHFNPH------CAEACNNLGVIYKDRDNLDKAVECYQMALSIK---PNFS----QS 237 (788)
Q Consensus 171 ~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~---p~~~----~~ 237 (788)
..+|..|+..|+|.+|.+.+.+..+.-.. ..+++..-..+|...+++.++...|.++.... +.++ ..
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 47888899999999998888887764211 24567777788888899999998888886552 1222 24
Q ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHh
Q 003891 238 LNNLGVVYT-VQGKMDAAAEMIEKAIAA 264 (788)
Q Consensus 238 ~~~la~~~~-~~g~~~eA~~~l~kal~~ 264 (788)
...-|..+. ..++|.+|...|-++++.
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 455677777 789999998888888754
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.47 Score=55.96 Aligned_cols=97 Identities=12% Similarity=0.035 Sum_probs=55.6
Q ss_pred HHcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcC
Q 003891 69 SELMQYDTALG-CYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 147 (788)
Q Consensus 69 ~~~g~~~~A~~-~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g 147 (788)
...+++++|.+ .+.. -+ +......+...+...|.+++|++..+ ++...+. .....|
T Consensus 610 ~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~f~----------~~l~~~ 666 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQKFE----------LALKVG 666 (814)
T ss_dssp HHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHHHH----------HHHHHT
T ss_pred HHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCC--------Ccchhee----------hhhhcC
Confidence 45677777655 3310 01 01122555666667777777665442 1111111 112245
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003891 148 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 193 (788)
Q Consensus 148 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 193 (788)
++++|.+..+. .++...|..+|..+.+.++++.|+++|.++
T Consensus 667 ~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 667 QLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 77777776542 356677888888888888888888888765
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.17 Score=53.93 Aligned_cols=167 Identities=11% Similarity=0.021 Sum_probs=116.5
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHH-cCChHHHHHHHHHHHhcCCCC--H--H
Q 003891 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA-----MYNLGVAYGE-MLKFDMAIVFYELAFHFNPHC--A--E 202 (788)
Q Consensus 133 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~--~--~ 202 (788)
-.+...+|..|...|+.++-.+++......-+.-+.+ ...+-..+.. .+..+.-++.+.++++...+. . .
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888999999888887765543333222 2233333322 244555666666666542222 1 2
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC---
Q 003891 203 --ACNNLGVIYKDRDNLDKAVECYQMALSIKPN--F----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN---PTY--- 268 (788)
Q Consensus 203 --~~~~la~~~~~~g~~~eA~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~~eA~~~l~kal~~~---p~~--- 268 (788)
.-..+|.+|...|+|.+|.+.+.+..+.... + .+++..-..+|...+++.++...+.++.... +.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 3348999999999999999999988875222 1 3467777889999999999999999997653 122
Q ss_pred -HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhC
Q 003891 269 -AEAYNNLGVLYR-DAGSISLAIDAYEQCLKID 299 (788)
Q Consensus 269 -~~~~~~la~~~~-~~g~~~eA~~~~~~al~l~ 299 (788)
+.....-|..+. ..++|.+|..+|-++++-.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 344566788888 8999999999999987543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.071 Score=61.65 Aligned_cols=115 Identities=14% Similarity=0.038 Sum_probs=81.1
Q ss_pred cCC-hHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--H-cCCHHHHHHHHHHHHhh--------CCCC----------HHH
Q 003891 180 MLK-FDMAIVFYELAFHFNPHCAEACNNLGVIYK--D-RDNLDKAVECYQMALSI--------KPNF----------SQS 237 (788)
Q Consensus 180 ~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~-~g~~~eA~~~~~~al~~--------~p~~----------~~~ 237 (788)
.++ ++.|+..+++..+.+|.....+ ..+.+.. . ..+--+|+..+.++++. .+.+ ...
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 444 5778888888877777653322 2222211 1 12344566666666632 2222 235
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 238 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 295 (788)
Q Consensus 238 ~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 295 (788)
+...+..+...|+++-|+++.++++...|.....|+.|+.+|..+|+++.|+-.+..+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 5566778888999999999999999999999999999999999999999999777665
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.43 E-value=1.5 Score=39.87 Aligned_cols=126 Identities=17% Similarity=0.133 Sum_probs=80.9
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 003891 35 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 114 (788)
Q Consensus 35 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 114 (788)
++-.+|+.++-+-.-. -|..++.-..++.+++-.|.|..|+-.+.+ -+.....+..+.||...+++.+|+..
T Consensus 13 ~kY~dYdt~~fLsa~L---~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~ 84 (242)
T 3kae_A 13 IRYRDYETAIFLAACL---LPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKS 84 (242)
T ss_dssp HHTTCHHHHHHHHHHH---C----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcccccHHHHHHHHH---ccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777665433322 344456667788899999999999887653 35577788889999999999999999
Q ss_pred HHHHHhh--C--CCc-HHHH------HHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHH
Q 003891 115 YERCLAV--S--PNF-EIAK------NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 168 (788)
Q Consensus 115 ~~~al~~--~--p~~-~~~~------~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 168 (788)
+++.++- + |+- .... ...-..+..+|.+....|+.++|+.++.......+-.+.
T Consensus 85 le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 85 LESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp HHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 9999932 2 221 1000 000123344555556667888888888887777665443
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.23 E-value=1.7 Score=39.46 Aligned_cols=95 Identities=19% Similarity=0.183 Sum_probs=76.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------CCCC
Q 003891 29 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-----------------RPMY 91 (788)
Q Consensus 29 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~-----------------~p~~ 91 (788)
.++..++-.|.|..++-.+.+ -+...+.+..+.||...++|.+|+..+++.++- +|.+
T Consensus 38 L~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~D 112 (242)
T 3kae_A 38 LMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGD 112 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTC
T ss_pred hhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccch
Confidence 356667778999888776643 355778888999999999999999999999841 2334
Q ss_pred HH-HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHH
Q 003891 92 AE-AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 128 (788)
Q Consensus 92 ~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 128 (788)
.+ .+..+|.++.+.|+-++|+.++.......+-.+..
T Consensus 113 kEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 113 EEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence 33 56778999999999999999999999998876543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.20 E-value=0.79 Score=53.94 Aligned_cols=97 Identities=13% Similarity=0.080 Sum_probs=49.1
Q ss_pred HHcCChHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 003891 35 KLAGNTQDGIQ-KYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 113 (788)
Q Consensus 35 ~~~g~~~~A~~-~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~ 113 (788)
...+++++|.+ ++.. -+ +......+...+...|.+++|++..+ ++..- .......|++++|.+
T Consensus 610 ~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARD 673 (814)
T ss_dssp HHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHH
Confidence 45677777766 3310 11 01122455556666777776665442 12111 223455677777766
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHH
Q 003891 114 CYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA 159 (788)
Q Consensus 114 ~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~a 159 (788)
..+.. ++...| ..+|..+.+.++++.|+++|.++
T Consensus 674 ~~~~~-----~~~~~W-------~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 674 LLTDE-----SAEMKW-------RALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHTTC-----CCHHHH-------HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhh-----CcHhHH-------HHHHHHHHHcCCHHHHHHHHHHc
Confidence 64321 233333 33444444466777777766654
|
| >3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.027 Score=59.71 Aligned_cols=98 Identities=14% Similarity=0.102 Sum_probs=60.5
Q ss_pred CcCCH-HHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCC
Q 003891 536 AKITP-KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF 614 (788)
Q Consensus 536 ~K~~~-~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~ 614 (788)
.|.=| +.+...++.|.+. +.++++.|++ ..++..++..+..+ ..-+.+.|... -.+..+.++.||+++-.
T Consensus 198 ~k~wp~~~~~~l~~~l~~~-g~~vvl~g~~----~e~~~~~~i~~~~~--~~~~~l~g~~s-l~e~~ali~~a~~~i~~- 268 (349)
T 3tov_A 198 EKRWPAERFAHVADYFGRL-GYKTVFFGGP----MDLEMVQPVVEQME--TKPIVATGKFQ-LGPLAAAMNRCNLLITN- 268 (349)
T ss_dssp GGCCCHHHHHHHHHHHHHH-TCEEEECCCT----TTHHHHHHHHHTCS--SCCEECTTCCC-HHHHHHHHHTCSEEEEE-
T ss_pred cCCCCHHHHHHHHHHHHhC-CCeEEEEeCc----chHHHHHHHHHhcc--cccEEeeCCCC-HHHHHHHHHhCCEEEEC-
Confidence 55543 3343334444333 5677777765 23333333333333 23466777655 67899999999999832
Q ss_pred CCCCchhHHHHhhhCCceeecCCCccCccch
Q 003891 615 PYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 645 (788)
Q Consensus 615 ~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 645 (788)
-.|+.-+ |.++|+|+|++-|.+...+.+
T Consensus 269 --DsG~~Hl-Aaa~g~P~v~lfg~t~p~~~~ 296 (349)
T 3tov_A 269 --DSGPMHV-GISQGVPIVALYGPSNPFFYG 296 (349)
T ss_dssp --SSHHHHH-HHTTTCCEEEECSSCCHHHHS
T ss_pred --CCCHHHH-HHhcCCCEEEEECCCCccccC
Confidence 2455555 889999999999987765543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.86 E-value=2.1 Score=46.50 Aligned_cols=52 Identities=4% Similarity=-0.051 Sum_probs=36.2
Q ss_pred cCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003891 37 AGNTQDGIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 88 (788)
Q Consensus 37 ~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~ 88 (788)
.|++++|++.+...-+. .+....+...+..++...++++...+.+.-..+..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr 86 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKH 86 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 36788888877554443 23356778888889999999988877765544433
|
| >2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.06 Score=56.26 Aligned_cols=95 Identities=14% Similarity=0.226 Sum_probs=56.5
Q ss_pred CcCCHHHHHHHHHHHhHc--CCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecC
Q 003891 536 AKITPKVLQVWARILCAV--PNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDT 613 (788)
Q Consensus 536 ~K~~~~~~~~~~~il~~~--p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~ 613 (788)
.|.=|. +-|+++.+.. .+.++++.+++ +..++...+ +.+ +.. .+.+.|... -.+..+.++.||+++-.
T Consensus 191 ~k~wp~--~~~~~l~~~L~~~~~~vvl~~g~---~~e~~~~~~-i~~-~~~--~~~l~g~~s-l~el~ali~~a~l~I~~ 260 (326)
T 2gt1_A 191 DKHWPE--EHWRELIGLLADSGIRIKLPWGA---PHEEERAKR-LAE-GFA--YVEVLPKMS-LEGVARVLAGAKFVVSV 260 (326)
T ss_dssp GGSCCH--HHHHHHHHHTTTTCCEEEECCSS---HHHHHHHHH-HHT-TCT--TEEECCCCC-HHHHHHHHHTCSEEEEE
T ss_pred cccCCH--HHHHHHHHHHHHCCCcEEEecCC---HHHHHHHHH-HHh-hCC--cccccCCCC-HHHHHHHHHhCCEEEec
Confidence 455442 4444444443 36677776332 133333333 322 222 356777655 68899999999999822
Q ss_pred CCCCCchhHHHHhhhCCceeecCCCccCccc
Q 003891 614 FPYAGTTTTCESLYMGVPCVTMAGSVHAHNV 644 (788)
Q Consensus 614 ~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~ 644 (788)
-.|+.-+ |.++|+|+|++-|.+...+.
T Consensus 261 ---DSG~~Hl-Aaa~g~P~v~lfg~t~p~~~ 287 (326)
T 2gt1_A 261 ---DTGLSHL-TAALDRPNITVYGPTDPGLI 287 (326)
T ss_dssp ---SSHHHHH-HHHTTCCEEEEESSSCHHHH
T ss_pred ---CCcHHHH-HHHcCCCEEEEECCCChhhc
Confidence 1455555 66699999999887755544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.94 Score=42.06 Aligned_cols=102 Identities=16% Similarity=0.062 Sum_probs=70.2
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 177 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 256 (788)
Q Consensus 177 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 256 (788)
..+.|+++.|.+..++. ++...|..+|......|+++-|..+|+++-. +..+..+|...|+.++-.+
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHH
Confidence 35678888888877655 5677888888888888888888888887632 2344555666777766665
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 257 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 296 (788)
Q Consensus 257 ~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 296 (788)
..+.+..... +.....++..+|+++++++.|.+.-
T Consensus 82 la~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 5555544332 2233455677888888888887653
|
| >3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.13 Score=52.23 Aligned_cols=86 Identities=7% Similarity=-0.018 Sum_probs=54.4
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecC
Q 003891 557 RLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA 636 (788)
Q Consensus 557 ~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~ 636 (788)
..++.|.+. +..+++++..+.. .++.+.+.+. +....+..+|+++. .||+|+.|++++|+|+|..+
T Consensus 186 i~vv~G~~~---~~~~~l~~~~~~~----~~v~v~~~~~---~m~~~m~~aDlvI~----~gG~T~~E~~~~g~P~i~ip 251 (282)
T 3hbm_A 186 ISIATSSSN---PNLKKLQKFAKLH----NNIRLFIDHE---NIAKLMNESNKLII----SASSLVNEALLLKANFKAIC 251 (282)
T ss_dssp EEEEECTTC---TTHHHHHHHHHTC----SSEEEEESCS---CHHHHHHTEEEEEE----ESSHHHHHHHHTTCCEEEEC
T ss_pred EEEEECCCc---hHHHHHHHHHhhC----CCEEEEeCHH---HHHHHHHHCCEEEE----CCcHHHHHHHHcCCCEEEEe
Confidence 334445442 3456666655442 3688888765 44556666999996 35689999999999998865
Q ss_pred CCccCccchhHHHhhhCCccc
Q 003891 637 GSVHAHNVGVSLLTKVGLKHL 657 (788)
Q Consensus 637 g~~~~~r~~~~~l~~~gl~~~ 657 (788)
-... .+..+..|...|...+
T Consensus 252 ~~~~-Q~~nA~~l~~~G~~~~ 271 (282)
T 3hbm_A 252 YVKN-QESTATWLAKKGYEVE 271 (282)
T ss_dssp CSGG-GHHHHHHHHHTTCEEE
T ss_pred CCCC-HHHHHHHHHHCCCEEE
Confidence 3221 3345555666665543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.23 E-value=1.5 Score=40.67 Aligned_cols=45 Identities=18% Similarity=0.042 Sum_probs=29.6
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 003891 69 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERC 118 (788)
Q Consensus 69 ~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 118 (788)
.+.|+++.|.+..++. ++...|..+|......|+++-|+++|+++
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3566777776665543 45666777777777777777777776665
|
| >2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A | Back alignment and structure |
|---|
Probab=94.21 E-value=0.11 Score=50.67 Aligned_cols=62 Identities=15% Similarity=0.159 Sum_probs=43.2
Q ss_pred cEEEcCCcCCcHHHHHhcc-cccEeecCCCC-CCchhHHHHhhhCCceeecCCCccC---ccchhHHHhhhCCc
Q 003891 587 RVDLLPLILLNHDHMQAYS-LMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHA---HNVGVSLLTKVGLK 655 (788)
Q Consensus 587 rv~~~~~~~~~~~~~~~~~-~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~---~r~~~~~l~~~gl~ 655 (788)
++...+.++ +....+. .||+++ . +|..|++|++++|+|.|..+..... ....|..|...|..
T Consensus 115 ~v~v~~f~~---~m~~~l~~~AdlvI----shaGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~ 181 (224)
T 2jzc_A 115 KVIGFDFST---KMQSIIRDYSDLVI----SHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYV 181 (224)
T ss_dssp EEEECCSSS---SHHHHHHHHCSCEE----ESSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCC
T ss_pred eEEEeeccc---hHHHHHHhcCCEEE----ECCcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCE
Confidence 556667655 3445556 699998 5 7888999999999999998875322 22235566666764
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=93.80 E-value=0.94 Score=44.95 Aligned_cols=121 Identities=10% Similarity=-0.028 Sum_probs=68.3
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003891 177 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 256 (788)
Q Consensus 177 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 256 (788)
+.+.|+.++|++..+..++.+|.+......+..+++-.|+++.|.+-++.+.+++|+.......+-.+. .|..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI-------~aE~ 79 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV-------KAAQ 79 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-------HHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH-------HHHH
Confidence 345566666666666666666666666666666666666666666666666666666433221111100 0111
Q ss_pred HHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 003891 257 MIEKAIAA--------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304 (788)
Q Consensus 257 ~l~kal~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 304 (788)
.=++.+.- .|........-+......|+.++|.+.-.++++..|....
T Consensus 80 ~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 80 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 11111110 1111223333455566789999999999999999887654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=93.66 E-value=0.95 Score=44.92 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=50.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 003891 210 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 270 (788)
Q Consensus 210 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~ 270 (788)
.+.+.|+.++|++..+..++.+|.+......+..++.-.|+++.|.+-++.+.+++|+...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 3456788888888888888888888888888888888888888888888888888887643
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=93.31 E-value=8.4 Score=43.58 Aligned_cols=251 Identities=10% Similarity=-0.039 Sum_probs=155.2
Q ss_pred HHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 4 ASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 83 (788)
Q Consensus 4 ~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~k 83 (788)
..++..|+.+|+.+.........+..++ +.+++..-+..|.. .|.+...-..........|+-.+|....++
T Consensus 56 ~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~----~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~ 127 (618)
T 1qsa_A 56 VTVTNFVRANPTLPPARTLQSRFVNELA----RREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKE 127 (618)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHH----HTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCChhHHHHHHHHHHHHH----hCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 3567888999999887666655555543 36778777765543 378888888888888999998888887777
Q ss_pred HHHhCCC------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHH-------------HhhCCCcHHHHHH-
Q 003891 84 AALERPM------------------YAEAYCNMGVIYKNRGDLESAIACYERC-------------LAVSPNFEIAKNN- 131 (788)
Q Consensus 84 al~~~p~------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a-------------l~~~p~~~~~~~~- 131 (788)
+...... ...-+.......+..|+...|....... +..+|........
T Consensus 128 lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~ 207 (618)
T 1qsa_A 128 LWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART 207 (618)
T ss_dssp HHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHhCCCCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc
Confidence 6543222 2233444445566666666665443321 1123332211100
Q ss_pred -----HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH
Q 003891 132 -----MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADA----MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 202 (788)
Q Consensus 132 -----la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 202 (788)
...-....+.......+.+.|...+.+..+...-+... ...++.-+...+...++...+.+......++.
T Consensus 208 ~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~- 286 (618)
T 1qsa_A 208 TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS- 286 (618)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH-
T ss_pred cCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChH-
Confidence 00011111222233457888888888776544333332 22233333344436677777777665444433
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003891 203 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 263 (788)
Q Consensus 203 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~ 263 (788)
....++....+.|+++.|..++++.-..........+-+|.++...|+.++|..+|+++..
T Consensus 287 ~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 287 LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3334444455779999999999876554445678899999999999999999999999975
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.20 E-value=11 Score=40.75 Aligned_cols=187 Identities=10% Similarity=-0.045 Sum_probs=102.0
Q ss_pred CCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhh
Q 003891 72 MQYDTALGCYEKAALE------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 145 (788)
Q Consensus 72 g~~~~A~~~~~kal~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~ 145 (788)
+++++|++.+....+. .+....+...+..++...++++...+++.-..........+...+...... ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~---~l~~ 106 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVME---YLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHH---HHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH---HHhc
Confidence 5677888776444332 233577888899999999999998887766555444333322222111110 0011
Q ss_pred cCCHHHHHHHHHHHHHhC----CC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--C----CHHHHHHHH
Q 003891 146 EGDINQGVAYYKKALYYN----WH-------YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP--H----CAEACNNLG 208 (788)
Q Consensus 146 ~g~~~~A~~~~~~al~~~----p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~la 208 (788)
....+. +.....++.- .+ .......++.+|...|++.+|...+.....-.- . -.+.+....
T Consensus 107 ~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~ 184 (445)
T 4b4t_P 107 SKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQM 184 (445)
T ss_dssp HCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred CCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 111111 1111122111 00 123456677777777777777777776653211 1 145566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHh---hCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003891 209 VIYKDRDNLDKAVECYQMALS---IKPNFS----QSLNNLGVVYTVQGKMDAAAEMIEKAIA 263 (788)
Q Consensus 209 ~~~~~~g~~~eA~~~~~~al~---~~p~~~----~~~~~la~~~~~~g~~~eA~~~l~kal~ 263 (788)
.++...+++.+|...++++.. ..+..+ ..+...|.++...++|.+|..+|..++.
T Consensus 185 rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 185 ELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 777777777777777776532 122222 2445566666677777777666666654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.16 E-value=1.6 Score=46.65 Aligned_cols=92 Identities=14% Similarity=0.087 Sum_probs=63.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKIDPHY----------------------APAYYNLGVVYSELMQYDTALGCYEKAA 85 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~lg~~~~~~g~~~~A~~~~~kal 85 (788)
...|......|+.++|...+.+++.+.... ..+...++..+...|++.+|+..+++++
T Consensus 119 ~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~ 198 (388)
T 2ff4_A 119 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALT 198 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334455556789999999999999874221 1123345556667777777777777777
Q ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 003891 86 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 119 (788)
Q Consensus 86 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 119 (788)
..+|.+..++..+..++...|+..+|++.|+++-
T Consensus 199 ~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 199 FEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777777777777777777777777776654
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.65 E-value=0.79 Score=50.48 Aligned_cols=81 Identities=26% Similarity=0.319 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 003891 59 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 138 (788)
Q Consensus 59 ~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~ 138 (788)
..+..+|.+......++.|..+|.+|..+.|.+...++.||.+....|+.-+|+-+|-+++......+.+..++...+..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 36778898888888899999999999999999999999999999999999999999999988877788888887776654
Q ss_pred h
Q 003891 139 L 139 (788)
Q Consensus 139 l 139 (788)
.
T Consensus 233 ~ 233 (497)
T 1ya0_A 233 A 233 (497)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.50 E-value=1.2 Score=47.57 Aligned_cols=111 Identities=14% Similarity=0.037 Sum_probs=75.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 003891 174 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA-VECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 252 (788)
Q Consensus 174 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA-~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 252 (788)
|......|+.+.|...+++++.+.....-.- .. ...+-.+ ...+++.. ..+...++..+...|++.
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~--~~-----~~~w~~~~r~~l~~~~------~~a~~~~~~~~l~~g~~~ 188 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPVLDD--LR-----DFQFVEPFATALVEDK------VLAHTAKAEAEIACGRAS 188 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--GT-----TSTTHHHHHHHHHHHH------HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCC--CC-----chhHHHHHHHHHHHHH------HHHHHHHHHHHHHCCCHH
Confidence 3344456788888888888887743321000 00 0111111 11121111 124456777888999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003891 253 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 297 (788)
Q Consensus 253 eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 297 (788)
+|+..+++++..+|-+..++..+..++...|+..+|++.|+++.+
T Consensus 189 ~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 189 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988754
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.39 E-value=0.57 Score=51.62 Aligned_cols=79 Identities=22% Similarity=0.261 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 203 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 281 (788)
Q Consensus 203 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~ 281 (788)
.+..+|.+......++.|..+|.+|..+.|++...++.+|.+....|+.-+|+-+|-+++......+.+..++..++.+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 5566777777777778888888888888888888888888888888888888888888877766677777777776654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.75 E-value=2.4 Score=50.20 Aligned_cols=98 Identities=7% Similarity=-0.067 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Q 003891 168 DAMYNLGVAYGEMLKFDMAIVFYELAFHF----NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLG 242 (788)
Q Consensus 168 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~la 242 (788)
..+..+-..|.+.|+.++|.+.|.+..+. ..-+...|+.+...|++.|+.++|.++|++..+.. .-+...|..+-
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 36788899999999999999999775432 23458899999999999999999999999998763 34677888888
Q ss_pred HHHHHcCC-HHHHHHHHHHHHHhC
Q 003891 243 VVYTVQGK-MDAAAEMIEKAIAAN 265 (788)
Q Consensus 243 ~~~~~~g~-~~eA~~~l~kal~~~ 265 (788)
.++.+.|+ .++|.+++++..+..
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcC
Confidence 89999998 578999999998864
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.67 E-value=4.9 Score=49.40 Aligned_cols=139 Identities=12% Similarity=-0.016 Sum_probs=74.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhh
Q 003891 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 142 (788)
Q Consensus 63 ~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~ 142 (788)
.+...+...++++-+.+ .+...+.++...+.+|.++...|++++|..+|+++-.--......
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l-------------- 878 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQ-------------- 878 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCS--------------
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchh--------------
Confidence 34455666677665544 344567777778899999999999999999998874321110000
Q ss_pred hhhcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCH----HHHHHHHHHHHHc
Q 003891 143 VKLEGDINQGVAYYKKALY---YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP-HCA----EACNNLGVIYKDR 214 (788)
Q Consensus 143 ~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~----~~~~~la~~~~~~ 214 (788)
.....+ ...... ........|..+..++.+.+.++.+++..+.|++..+ ++. ..|.++-..+...
T Consensus 879 ---~~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l 951 (1139)
T 4fhn_B 879 ---FAVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 951 (1139)
T ss_dssp ---CSSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred ---hhhhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhh
Confidence 000000 000011 1111233444555556666666666666666665432 221 2455555556666
Q ss_pred CCHHHHHHHHHH
Q 003891 215 DNLDKAVECYQM 226 (788)
Q Consensus 215 g~~~eA~~~~~~ 226 (788)
|+|++|...+..
T Consensus 952 ~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 952 GKFDAAHVALMV 963 (1139)
T ss_dssp CCSGGGGHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 666666555543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=91.59 E-value=6.7 Score=46.28 Aligned_cols=274 Identities=12% Similarity=0.094 Sum_probs=145.5
Q ss_pred HcCChHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C---CH----HHHHHHHH
Q 003891 36 LAGNTQDGIQKYYEALKID-PHY----APAYYNLGVVYSELMQYDTALGCYEKAALERP---M---YA----EAYCNMGV 100 (788)
Q Consensus 36 ~~g~~~~A~~~~~~al~~~-p~~----~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p---~---~~----~~~~~la~ 100 (788)
..|+.++++..+.+.+... .++ ..+.+.+|.++...+ ++++.++...+..+. . .. -+-..||.
T Consensus 386 h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 386 HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4467777777777665422 122 345666666665554 467887777776432 0 11 24456777
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003891 101 IYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 180 (788)
Q Consensus 101 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 180 (788)
++...++ +++.+.+...+..+.. ... ..+-..+|.++.-.|+-+-....+..+.+...+...-...+|..+...
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd~~--~~~---~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYNDSA--TSG---EAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINY 537 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTCCH--HHH---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred HhcCCCC-HHHHHHHHHHHhcCCH--HHH---HHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhC
Confidence 7766665 4566777777654332 111 123345666666677766666666655543322222223344445566
Q ss_pred CChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 181 LKFDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 258 (788)
Q Consensus 181 g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l 258 (788)
|+.+.+....+......... ..+...+|..|...|+...-.+++..+..-..++..-..-+|..+...|+.+.+...+
T Consensus 538 g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 538 GRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 77776666666554432111 1233456777778888655555666665433222222222233333345543333333
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCch
Q 003891 259 EKAIAANPTYAEAYNNLGVLYRD----AGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDD 322 (788)
Q Consensus 259 ~kal~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~ 322 (788)
+...+ ..++.+.+..+.++-. .++ .+++..+.+... ++ +..++.+-.+++..+..|..+
T Consensus 618 ~~L~~--~~d~~VR~gAalALGli~aGn~~-~~aid~L~~L~~-D~-d~~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 618 QLLSK--SHNAHVRCGTAFALGIACAGKGL-QSAIDVLDPLTK-DP-VDFVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp TTGGG--CSCHHHHHHHHHHHHHHTSSSCC-HHHHHHHHHHHT-CS-SHHHHHHHHHHHHHHSTTCCT
T ss_pred HHHHh--cCCHHHHHHHHHHHHHhccCCCc-HHHHHHHHHHcc-CC-CHHHHHHHHHHHHHHhcCCcc
Confidence 32222 2345555544443333 343 678888887753 33 466667777777777766544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.30 E-value=3.5 Score=48.94 Aligned_cols=100 Identities=6% Similarity=-0.112 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKI----DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER-PMYAEAYCNM 98 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~-p~~~~~~~~l 98 (788)
-..|..+-..+.+.|+.++|.++|.+..+. -.-+...|..+...|.+.|+.++|.++|+++.+.. .-+...|..+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 345778888999999999999999776432 23468899999999999999999999999998753 2357888999
Q ss_pred HHHHHHCCC-HHHHHHHHHHHHhhCC
Q 003891 99 GVIYKNRGD-LESAIACYERCLAVSP 123 (788)
Q Consensus 99 a~~~~~~g~-~~~A~~~~~~al~~~p 123 (788)
..++.+.|+ .++|.+++++..+..-
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~ 232 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGL 232 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCC
Confidence 999999997 5789999999988643
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.19 E-value=0.62 Score=50.56 Aligned_cols=104 Identities=13% Similarity=0.000 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 003891 58 APAYYNLGVVYSELMQYDTALGCYEKAALERP---MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 134 (788)
Q Consensus 58 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 134 (788)
..++..+|..|...|++++|.+.|.++..... ...+.+.....++...+++..+..+++++........+ +...+.
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d-~~~~~~ 209 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGD-WERRNR 209 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCC-THHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCC-HHHHHH
Confidence 44677888888888888888888888776432 23567777788888888888888888887654322110 111223
Q ss_pred HHHHhhhhhhhcCCHHHHHHHHHHHHHh
Q 003891 135 ALTDLGTKVKLEGDINQGVAYYKKALYY 162 (788)
Q Consensus 135 ~l~~lg~~~~~~g~~~~A~~~~~~al~~ 162 (788)
.....|.++...++|.+|..+|..++..
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 3334455555667777777776666544
|
| >2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ... | Back alignment and structure |
|---|
Probab=91.13 E-value=1.2 Score=51.58 Aligned_cols=112 Identities=15% Similarity=0.032 Sum_probs=70.0
Q ss_pred CCeEEEecCCC--CcCCHHH-HHHHHHHH--hHcC-----CcEEEEecCCCCCHHHHHHHHHHHHHcC--------CCCC
Q 003891 525 GFITFGSFNNL--AKITPKV-LQVWARIL--CAVP-----NSRLVVKCKPFCCDSVRHRFLSTLEQLG--------LESL 586 (788)
Q Consensus 525 ~~~~f~~~~~~--~K~~~~~-~~~~~~il--~~~p-----~~~l~l~~~~~~~~~~~~~l~~~~~~~g--------i~~~ 586 (788)
+.+++|-+-|+ +|...-. +....+++ ...| ..++++.|++.........+.+.+.+.. +. +
T Consensus 549 d~l~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIkli~~va~~in~Dp~v~-~ 627 (824)
T 2gj4_A 549 NSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVG-D 627 (824)
T ss_dssp TSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCTTTG-G
T ss_pred CcceEeeeecchhhcchhhHHHHHHHHHHHHHhCCCCCCCCEEEEEEEeCCHhHHHHHHHHHHHHHHHHHhccCcccC-C
Confidence 45677777777 8877554 44444443 2344 4678888877543334434444443321 22 6
Q ss_pred --cEEEcCCcCCcHHHHHhcccccEeecCCC--C-CCchhHHHHhhhCCc-eeecCCC
Q 003891 587 --RVDLLPLILLNHDHMQAYSLMDISLDTFP--Y-AGTTTTCESLYMGVP-CVTMAGS 638 (788)
Q Consensus 587 --rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~--~-~g~~t~~eal~~GvP-vvt~~g~ 638 (788)
+|+|++.-. ..--...+..|||+|-|+- + ..||+-+=||.-|++ ++|+.|.
T Consensus 628 ~lKVvFl~nYd-vslA~~I~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLtigtlDGa 684 (824)
T 2gj4_A 628 RLRVIFLENYR-VSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGA 684 (824)
T ss_dssp GEEEEEETTCC-HHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSCTT
T ss_pred ceEEEEECCCC-HHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCceEEEEecCc
Confidence 899987632 2222236799999999995 7 778888888888854 6676664
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.02 E-value=0.35 Score=52.90 Aligned_cols=127 Identities=13% Similarity=0.078 Sum_probs=59.3
Q ss_pred HHHHcCChHHHHHHHHHHHh--c---------CCCCHHHHHHHHHHHHHcCCHHHHH----------HHHHHHHhh----
Q 003891 176 AYGEMLKFDMAIVFYELAFH--F---------NPHCAEACNNLGVIYKDRDNLDKAV----------ECYQMALSI---- 230 (788)
Q Consensus 176 ~~~~~g~~~~A~~~~~~al~--~---------~p~~~~~~~~la~~~~~~g~~~eA~----------~~~~~al~~---- 230 (788)
.+...+++++|.++-...+. . +.-.+.+|+.++.++...|+..+.. ..+-.++..
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 34566777777776655441 1 2224566777777777777665432 222233322
Q ss_pred -CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 231 -KPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 231 -~p~-~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
+.. ....++.+-..|...+.|++|..+..++. .|.. ...++.+|.++.-+++|.+|.+++..|+...|.
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 221 14467778888999999999999999884 4432 456778999999999999999999999998887
Q ss_pred Chh
Q 003891 302 SRN 304 (788)
Q Consensus 302 ~~~ 304 (788)
+..
T Consensus 303 ~~~ 305 (523)
T 4b4t_S 303 NSK 305 (523)
T ss_dssp SSS
T ss_pred chh
Confidence 654
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.80 E-value=1.8 Score=47.43 Aligned_cols=142 Identities=15% Similarity=0.094 Sum_probs=67.4
Q ss_pred hhcCCHHHHHHHHHHHHH--h---------CCCCHHHHHHHHHHHHHcCChHHHH----------HHHHHHHhc-----C
Q 003891 144 KLEGDINQGVAYYKKALY--Y---------NWHYADAMYNLGVAYGEMLKFDMAI----------VFYELAFHF-----N 197 (788)
Q Consensus 144 ~~~g~~~~A~~~~~~al~--~---------~p~~~~~~~~la~~~~~~g~~~~A~----------~~~~~al~~-----~ 197 (788)
...+++++|.++-...+. . +.-.+.+|+..+.++...|+..... ..+-.+++. +
T Consensus 147 ~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D 226 (523)
T 4b4t_S 147 WDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHD 226 (523)
T ss_dssp --------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSS
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccC
Confidence 446788888887765541 1 2223456777777777777665432 122222221 2
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 003891 198 PH-CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 269 (788)
Q Consensus 198 p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~ 269 (788)
.. ....++.+-..|...+.+++|.++..++. .|.. ...++.+|.++..+++|.+|.+++..|+...|.+.
T Consensus 227 ~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 227 NETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp SCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred cchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 22 35677888899999999999999999984 4432 34677899999999999999999999999877542
Q ss_pred -------HHHHHHHHHHHHcCCHHH
Q 003891 270 -------EAYNNLGVLYRDAGSISL 287 (788)
Q Consensus 270 -------~~~~~la~~~~~~g~~~e 287 (788)
.++..+..+-.-+|+..+
T Consensus 305 ~a~gfr~~a~K~lI~V~LLlG~iP~ 329 (523)
T 4b4t_S 305 KSLGFLQQSNKLHCCIQLLMGDIPE 329 (523)
T ss_dssp SCSHHHHHHHHHHHHHHHHHTCCCC
T ss_pred hhhhHHHHHHHHHHhHHhhcCCCCC
Confidence 233333334344576543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.56 E-value=19 Score=42.49 Aligned_cols=251 Identities=11% Similarity=0.060 Sum_probs=142.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC---CcH-HHHHH
Q 003891 61 YYNLGVVYSELMQYDTALGCYEKAALER-PMY----AEAYCNMGVIYKNRGDLESAIACYERCLAVSP---NFE-IAKNN 131 (788)
Q Consensus 61 ~~~lg~~~~~~g~~~~A~~~~~kal~~~-p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~-~~~~~ 131 (788)
...+|.+ ..|+.++++..+.+.+... ..+ .-+.+.+|.++...+ ++++.++...+.... ... .....
T Consensus 379 ~aSLGlI--h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir 454 (963)
T 4ady_A 379 TASLGVI--HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLL 454 (963)
T ss_dssp HHHHHHH--TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHH
T ss_pred HHHhhhh--ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHH
Confidence 3444444 4577778888887766522 222 345666777766665 468888888776543 110 11122
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003891 132 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA--DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGV 209 (788)
Q Consensus 132 la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 209 (788)
.+ +...+|.++.-.++ +++.+.+...+..+.... .+-+.+|.++...|+-+....++..+.+...+...-...+|.
T Consensus 455 ~g-AaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgL 532 (963)
T 4ady_A 455 HG-ASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGL 532 (963)
T ss_dssp HH-HHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HH-HHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 23 33467766665665 567777777776443211 345677888888888777777777666544333333344455
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 003891 210 IYKDRDNLDKAVECYQMALSIKPNFSQ----SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 285 (788)
Q Consensus 210 ~~~~~g~~~eA~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~ 285 (788)
.+...|+.+.+....+..... .++. +...+|..|...|+...-...+..+.+-..++..-..-+|......|+.
T Consensus 533 Gll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 533 ALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp HHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC
T ss_pred HhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH
Confidence 555678877776666655442 2333 3345677788899965555577776654333333222333334445555
Q ss_pred HHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCc
Q 003891 286 SLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD 321 (788)
Q Consensus 286 ~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~ 321 (788)
+.+...++...+ ..++.++....+++..+..|..
T Consensus 611 e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~ 644 (963)
T 4ady_A 611 TTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKG 644 (963)
T ss_dssp SSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCC
Confidence 444444433332 3457777777777776666554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.39 E-value=3.8 Score=50.38 Aligned_cols=103 Identities=14% Similarity=-0.019 Sum_probs=75.8
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----------------------CCCCHHHHHHHHHHHHHcC
Q 003891 159 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-----------------------NPHCAEACNNLGVIYKDRD 215 (788)
Q Consensus 159 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----------------------~p~~~~~~~~la~~~~~~g 215 (788)
.+...+.++...+.+|.++...|++++|..+|+++..- .......|..+..++.+.+
T Consensus 834 l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~ 913 (1139)
T 4fhn_B 834 LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEES 913 (1139)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTS
T ss_pred HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcC
Confidence 33456677777788999999999999999999876321 1112456677778888889
Q ss_pred CHHHHHHHHHHHHhhCC-CCHH----HHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 216 NLDKAVECYQMALSIKP-NFSQ----SLNNLGVVYTVQGKMDAAAEMIEKA 261 (788)
Q Consensus 216 ~~~eA~~~~~~al~~~p-~~~~----~~~~la~~~~~~g~~~eA~~~l~ka 261 (788)
.++.+++..+.|++..+ ++.. .|.++-..+...|+|++|...+...
T Consensus 914 ~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 914 AYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp CCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred CHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 99999999999988754 3322 5667777888889999987777544
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.31 E-value=2.8 Score=45.37 Aligned_cols=98 Identities=9% Similarity=-0.062 Sum_probs=78.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC----HHHHHH
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDP---HYAPAYYNLGVVYSELMQYDTALGCYEKAALER--PMY----AEAYCN 97 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~--p~~----~~~~~~ 97 (788)
+..+|..+...|++++|.++|.++..... ...+.+..+..++...+++..+..++.++.... ..+ ......
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~ 213 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTY 213 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH
Confidence 56789999999999999999999887643 347788899999999999999999999996542 122 234455
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCC
Q 003891 98 MGVIYKNRGDLESAIACYERCLAVSPN 124 (788)
Q Consensus 98 la~~~~~~g~~~~A~~~~~~al~~~p~ 124 (788)
.|.++...++|.+|..+|-.++.....
T Consensus 214 ~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 214 YGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp HHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 677888899999999999888765443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=82.29 E-value=46 Score=33.82 Aligned_cols=81 Identities=10% Similarity=-0.098 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 003891 165 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR---DNLDKAVECYQMALSIKPNFSQSLNNL 241 (788)
Q Consensus 165 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~eA~~~~~~al~~~p~~~~~~~~l 241 (788)
.+++.+..+|..|.+.+++.+|..+|-.. +.+++..+..+-.-+... |...++ ..+...
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~---~~~s~~~~a~~l~~w~~~~~~~~~~e~---------------dlf~~R 193 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLG---THDSMIKYVDLLWDWLCQVDDIEDSTV---------------AEFFSR 193 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTS---CHHHHHHHHHHHHHHHHHTTCCCHHHH---------------HHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhC---CCccHHHHHHHHHHHHHhcCCCCcchH---------------HHHHHH
Confidence 47888899999999999998888877421 111233333222222222 333332 222222
Q ss_pred H-HHHHHcCCHHHHHHHHHHHHH
Q 003891 242 G-VVYTVQGKMDAAAEMIEKAIA 263 (788)
Q Consensus 242 a-~~~~~~g~~~eA~~~l~kal~ 263 (788)
+ ..|...++...|...++...+
T Consensus 194 aVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 194 LVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 2 246678899888888776654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 788 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-44 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-38 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-36 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-36 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-30 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-19 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-11 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 6e-39 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 4e-36 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-22 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 9e-22 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 2e-28 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 0.003 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 2e-26 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 3e-16 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 9e-07 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 6e-05 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 6e-26 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 3e-24 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 4e-10 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 1e-25 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 3e-24 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 6e-11 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 2e-08 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 2e-20 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 6e-15 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 6e-14 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 6e-11 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 7e-06 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 2e-18 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 4e-15 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 0.002 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 8e-18 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 5e-08 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 2e-06 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 5e-17 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 8e-17 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 2e-16 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 4e-15 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 6e-15 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-13 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 3e-12 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 9e-12 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 1e-11 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 5e-11 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-14 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 4e-12 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 1e-11 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 3e-11 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 6e-11 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 3e-10 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 4e-06 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-04 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 2e-13 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 8e-11 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 2e-10 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 1e-09 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 2e-06 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 7e-04 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 1e-12 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 3e-11 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 1e-10 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 7e-09 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 7e-07 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 9e-04 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 5e-11 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 5e-07 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 1e-05 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 1e-10 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 1e-09 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 2e-08 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 1e-10 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 6e-09 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 5e-08 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 1e-07 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 1e-04 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 2e-10 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 3e-09 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 2e-07 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 5e-07 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 6e-05 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 7e-10 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 5e-09 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-07 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 5e-07 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 7e-07 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 6e-05 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 7e-10 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 8e-10 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 1e-08 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 4e-07 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 0.001 | |
| d1ouva_ | 265 | a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He | 6e-08 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 1e-06 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 3e-06 | |
| d2ff4a2 | 179 | a.118.8.3 (A:105-283) Probable regulatory protein | 3e-04 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 5e-04 | |
| d2pqrb1 | 124 | a.118.8.1 (B:5-128) Mitochondria fission protein F | 6e-04 | |
| d2pqrb1 | 124 | a.118.8.1 (B:5-128) Mitochondria fission protein F | 0.001 | |
| d2pqrb1 | 124 | a.118.8.1 (B:5-128) Mitochondria fission protein F | 0.002 | |
| d2pqrb1 | 124 | a.118.8.1 (B:5-128) Mitochondria fission protein F | 0.004 | |
| d1zu2a1 | 145 | a.118.8.1 (A:1-145) Mitochondrial import receptor | 0.002 | |
| d1zu2a1 | 145 | a.118.8.1 (A:1-145) Mitochondrial import receptor | 0.003 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 162 bits (411), Expect = 2e-44
Identities = 73/240 (30%), Positives = 124/240 (51%), Gaps = 7/240 (2%)
Query: 44 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 103
Y +A++ P++A A+ NLG V++ + A+ +EKA P + +AY N+G + K
Sbjct: 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214
Query: 104 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 163
+ A+A Y R L++SPN + N+A + G I+ + Y++A+
Sbjct: 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG-------LIDLAIDTYRRAIELQ 267
Query: 164 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 223
H+ DA NL A E A Y A P A++ NNL I +++ N+++AV
Sbjct: 268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 327
Query: 224 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 283
Y+ AL + P F+ + +NL V QGK+ A ++AI +PT+A+AY+N+G ++
Sbjct: 328 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 145 bits (365), Expect = 3e-38
Identities = 69/238 (28%), Positives = 119/238 (50%), Gaps = 7/238 (2%)
Query: 72 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 131
+ + A CY KA +P +A A+ N+G ++ +G++ AI +E+ + + PNF A N
Sbjct: 149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYIN 208
Query: 132 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 191
+ L + ++ VA Y +AL + ++A NL Y E D+AI Y
Sbjct: 209 LGNVLKEAR-------IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR 261
Query: 192 LAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 251
A PH +A NL K++ ++ +A +CY AL + P + SLNNL + QG +
Sbjct: 262 RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321
Query: 252 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 309
+ A + KA+ P +A A++NL + + G + A+ Y++ ++I P +A N
Sbjct: 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 140 bits (352), Expect = 1e-36
Identities = 80/354 (22%), Positives = 142/354 (40%), Gaps = 36/354 (10%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+ +P VL L + A+K +P A AY
Sbjct: 19 ERHCMQLWRQEPDN-------TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS 71
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPM---------------------------YAEAY 95
NLG VY E Q A+ Y A +P +
Sbjct: 72 NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131
Query: 96 CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 155
++ + + G+L A+ E A + N A+A ++LG +G+I + +
Sbjct: 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH 191
Query: 156 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 215
++KA+ + ++ DA NLG E FD A+ Y A +P+ A NL +Y ++
Sbjct: 192 FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG 251
Query: 216 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 275
+D A++ Y+ A+ ++P+F + NL +G + A + A+ PT+A++ NNL
Sbjct: 252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311
Query: 276 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 329
+ R+ G+I A+ Y + L++ P+ A N LA +G + ++
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN--LASVLQQQGKLQEALMHYK 363
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 139 bits (351), Expect = 2e-36
Identities = 77/322 (23%), Positives = 135/322 (41%), Gaps = 9/322 (2%)
Query: 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 86
+L AG+ + + + + +P L ++ + + D + A
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 87 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 146
+ P+ AEAY N+G +YK RG L+ AI Y L + P+F N+A +
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAA-------ALVAA 114
Query: 147 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 206
GD+ V Y AL YN +LG + + + A Y A P+ A A +N
Sbjct: 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 174
Query: 207 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 266
LG ++ + + A+ ++ A+++ PNF + NLG V D A +A++ +P
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
Query: 267 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE 326
+A + NL +Y + G I LAID Y + +++ P +A N LA +G + +
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN--LANALKEKGSVAEAED 292
Query: 327 AHRDWGKRFMRLYSQYTSWDNT 348
+ + + N
Sbjct: 293 CYNTALRLCPTHADSLNNLANI 314
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 122 bits (305), Expect = 2e-30
Identities = 60/213 (28%), Positives = 97/213 (45%), Gaps = 14/213 (6%)
Query: 4 ASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN 63
+ KA++ DP++ A +LG LK A + Y AL + P++A + N
Sbjct: 190 HHFEKAVTLDPNFLDA-------YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242
Query: 64 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 123
L VY E D A+ Y +A +P + +AYCN+ K +G + A CY L + P
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302
Query: 124 NFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 183
+ NN+A + G +I + V Y+KAL +A A NL + K
Sbjct: 303 THADSLNNLANIKREQG-------NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 355
Query: 184 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 216
A++ Y+ A +P A+A +N+G K+ +
Sbjct: 356 QEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.8 bits (216), Expect = 4e-19
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 7/138 (5%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+ +Y +A+ P + A LA L + G + + Y AL++ P +A +
Sbjct: 257 IDTYRRAIELQPHFPDAYCNLANALKEKG-------SVAEAEDCYNTALRLCPTHADSLN 309
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 122
NL + E + A+ Y KA P +A A+ N+ + + +G L+ A+ Y+ + +S
Sbjct: 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369
Query: 123 PNFEIAKNNMAIALTDLG 140
P F A +NM L ++
Sbjct: 370 PTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.3 bits (155), Expect = 2e-11
Identities = 19/196 (9%), Positives = 42/196 (21%)
Query: 240 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 299
L G +AA + P L ++ + + +K +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 300 PDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGY 359
P A N + + H K + + +
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123
Query: 360 VSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG 419
+ Y + + L ++ A +T G + G
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183
Query: 420 IDEKKVAAMVREDKID 435
+ + +D
Sbjct: 184 EIWLAIHHFEKAVTLD 199
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 149 bits (376), Expect = 6e-39
Identities = 31/237 (13%), Positives = 68/237 (28%), Gaps = 11/237 (4%)
Query: 44 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 103
Q +A + + V++ Y+K + YA ++
Sbjct: 6 AQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWN 62
Query: 104 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 163
+ ++ I + N ++ + G Q + +
Sbjct: 63 HA--FKNQITTLQGQAKNRANPNRSEVQANL----SLFLEAASGFYTQLLQELCTVFNVD 116
Query: 164 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVEC 223
LG+ + + + + C +LG I + R+ +A
Sbjct: 117 LPCRVKSSQLGIISNKQTHTSAIVKPQSSSC--SYICQHCLVHLGDIARYRNQTSQAESY 174
Query: 224 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 280
Y+ A + P+ Q N L ++ + +G ++IA + A NL
Sbjct: 175 YRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 141 bits (355), Expect = 4e-36
Identities = 37/271 (13%), Positives = 84/271 (30%), Gaps = 20/271 (7%)
Query: 77 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI-- 134
+ +A + + ++ ++ +R L+ Y++ L + + K
Sbjct: 5 SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW 61
Query: 135 --ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 192
A + T ++ + + + A + +
Sbjct: 62 NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGF----------YTQLLQELCT 111
Query: 193 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 252
F+ + C + LG+I + + V+ + L +LG + + +
Sbjct: 112 VFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSS--CSYICQHCLVHLGDIARYRNQTS 169
Query: 253 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 312
A A P+ + YN L +L G I Y + + + A N A
Sbjct: 170 QAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229
Query: 313 MNYINEGHDD-KLFEAHRDWGKRFMRLYSQY 342
++ E D+ K D+ K F++ +
Sbjct: 230 LSKALESRDEVKTKWGVSDFIKAFIKFHGHV 260
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 99.1 bits (246), Expect = 2e-22
Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 9/135 (6%)
Query: 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 61
L+ + D + + LG +T ++ + +
Sbjct: 105 LLQELCTVFNVDLPC-------RVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHC--L 155
Query: 62 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 121
+LG + Q A Y AA P + Y + ++ ++GD + I Y R +AV
Sbjct: 156 VHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215
Query: 122 SPNFEIAKNNMAIAL 136
F A N+ AL
Sbjct: 216 KFPFPAASTNLQKAL 230
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 97.2 bits (241), Expect = 9e-22
Identities = 20/215 (9%), Positives = 47/215 (21%), Gaps = 42/215 (19%)
Query: 150 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN--- 206
Q Y ++A D+ + Y+ + A
Sbjct: 3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQD 59
Query: 207 --------------------------------LGVIYKDRDNLDKAVECYQMALSIKPNF 234
+ + ++ ++
Sbjct: 60 LWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPC 119
Query: 235 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 294
+ LG++ Q A + + + +LG + R S A Y
Sbjct: 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRH 177
Query: 295 CLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 329
++ P + LA+ ++G +
Sbjct: 178 AAQLVPSNGQPYNQ--LAILASSKGDHLTTIFYYC 210
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 115 bits (287), Expect = 2e-28
Identities = 26/293 (8%), Positives = 65/293 (22%), Gaps = 22/293 (7%)
Query: 29 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL----------MQYDTAL 78
+ + + ++ + L +P +A + V L L
Sbjct: 34 AVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAEL 93
Query: 79 GCYEKAALERPMYAEAYCNMG--VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 136
G E P + + + + + R L +
Sbjct: 94 GFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRR--- 150
Query: 137 TDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 196
+ + +A+ + N+ + + ++ + L +
Sbjct: 151 ---FVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV 207
Query: 197 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 256
E N D D++ Y L + TV + +
Sbjct: 208 LLKELELVQNA----FFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCK 263
Query: 257 MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 309
+++ N L + + +DP +
Sbjct: 264 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 316
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.1 bits (87), Expect = 0.003
Identities = 15/106 (14%), Positives = 37/106 (34%), Gaps = 10/106 (9%)
Query: 233 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL----------YRDA 282
+ + + ++ E+ + + ANP +A +N + A
Sbjct: 27 LYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESA 86
Query: 283 GSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 328
+ + E CL+++P S +R ++ + E + + E
Sbjct: 87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELC 132
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 108 bits (269), Expect = 2e-26
Identities = 28/242 (11%), Positives = 68/242 (28%), Gaps = 13/242 (5%)
Query: 88 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 147
+ + Y + + E A + ++ + + L L
Sbjct: 39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ------K 92
Query: 148 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL 207
D+++ + Y + ++ V + + F + + A +
Sbjct: 93 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR 152
Query: 208 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE------KA 261
+ ++ D ++ L + N V + + A + +
Sbjct: 153 QWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEM 212
Query: 262 IAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD 321
I P A+N L + +D G +S + Q L + P + L Y + +
Sbjct: 213 IKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLEN 271
Query: 322 DK 323
Sbjct: 272 QC 273
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.1 bits (191), Expect = 3e-16
Identities = 35/283 (12%), Positives = 84/283 (29%), Gaps = 26/283 (9%)
Query: 8 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 67
+ ++ + VL S + + +A++++ ++ V+
Sbjct: 34 VQIIYSDKFRDVYDYFRAVLQRDERS-------ERAFKLTRDAIELNAANYTVWHFRRVL 86
Query: 68 YSELMQ-YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 126
L + + E+P + + + V+ + D + L
Sbjct: 87 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY 146
Query: 127 IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 186
A + + + + + Y + L + ++
Sbjct: 147 HAWQHRQWVIQEF-------KLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 199
Query: 187 IVFYELAFHF------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS--L 238
V + PH A N L I +DR L K L ++P+ S +
Sbjct: 200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLI 258
Query: 239 NNLGVVYT--VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 279
L +Y ++ + D +++ KA+ A+ + + Y
Sbjct: 259 AFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEY 301
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.2 bits (116), Expect = 9e-07
Identities = 4/66 (6%), Positives = 22/66 (33%)
Query: 260 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 319
I + + + Y+ + + A ++++ + R + + + +
Sbjct: 34 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD 93
Query: 320 HDDKLF 325
+++
Sbjct: 94 LHEEMN 99
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (101), Expect = 6e-05
Identities = 20/191 (10%), Positives = 46/191 (24%), Gaps = 2/191 (1%)
Query: 6 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 65
H+ ++ + V ++ + ++ + L D A+ +
Sbjct: 94 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ 153
Query: 66 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 125
V E +D L ++ E + + N
Sbjct: 154 WVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI 213
Query: 126 EIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK--F 183
++ +N + G + L + + L Y +ML+
Sbjct: 214 KLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 273
Query: 184 DMAIVFYELAF 194
D A
Sbjct: 274 DNKEDILNKAL 284
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 107 bits (266), Expect = 6e-26
Identities = 46/266 (17%), Positives = 89/266 (33%), Gaps = 10/266 (3%)
Query: 29 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 88
+ G G+ + + + A++ DP + A+ LG +E Q A+ + +
Sbjct: 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83
Query: 89 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD--------LG 140
P A + V + N A L +P + +
Sbjct: 84 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 143
Query: 141 TKVKLEGDINQGVAYYKKAL--YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 198
+ + + + A+ D LGV + ++D A+ + A P
Sbjct: 144 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 203
Query: 199 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 258
+ N LG + + ++AV Y+ AL ++P + +S NLG+ G A E
Sbjct: 204 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 263
Query: 259 EKAIAANPTYAEAYNNLGVLYRDAGS 284
+A+ G + + S
Sbjct: 264 LEALNMQRKSRGPRGEGGAMSENIWS 289
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 102 bits (253), Expect = 3e-24
Identities = 53/297 (17%), Positives = 100/297 (33%), Gaps = 11/297 (3%)
Query: 44 IQKYYEALKIDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 102
K Y+ + +P P + G+ + A+ +E A + P + EA+ +G
Sbjct: 4 YDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQ 63
Query: 103 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK--------LEGDINQGVA 154
AI+ RCL + P+ + A +A++ T+ + + L
Sbjct: 64 AENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL 123
Query: 155 YYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE--LAFHFNPHCAEACNNLGVIYK 212
+ + F + + + LGV++
Sbjct: 124 VTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 183
Query: 213 DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 272
DKAV+C+ ALS++PN N LG + + A +A+ P Y +
Sbjct: 184 LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 243
Query: 273 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 329
NLG+ + G+ A++ + + L + SR I L +
Sbjct: 244 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 300
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.4 bits (142), Expect = 4e-10
Identities = 19/149 (12%), Positives = 40/149 (26%), Gaps = 4/149 (2%)
Query: 189 FYELAFHFNP----HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 244
Y+ + F G+ +L AV ++ A+ P ++ LG
Sbjct: 3 TYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTT 62
Query: 245 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304
+ A + + + P A L V + + A + L+ P +
Sbjct: 63 QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH 122
Query: 305 AGQNRLLAMNYINEGHDDKLFEAHRDWGK 333
G ++ +
Sbjct: 123 LVTPAEEGAGGAGLGPSKRILGSLLSDSL 151
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 104 bits (260), Expect = 1e-25
Identities = 43/262 (16%), Positives = 86/262 (32%), Gaps = 17/262 (6%)
Query: 30 LGTSLKLAGNTQDGIQKYYEALKI----DPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 85
L L+ + + + + L D A Y GV+Y L A + +A
Sbjct: 5 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64
Query: 86 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 145
RP E + +G+ G+ ++A ++ L + P + A N IAL
Sbjct: 65 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG------ 118
Query: 146 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--CAEA 203
G + + L +A ++ + V + +
Sbjct: 119 -GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI 177
Query: 204 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 263
++ +++ S+ + S++ LG Y G +D+A + + A+A
Sbjct: 178 VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237
Query: 264 ANPTYAEAYNN----LGVLYRD 281
N + L +L +D
Sbjct: 238 NNVHNFVEHRYALLELSLLGQD 259
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 100 bits (249), Expect = 3e-24
Identities = 42/261 (16%), Positives = 81/261 (31%), Gaps = 13/261 (4%)
Query: 64 LGVVYSELMQYDTALGCYEKA----ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 119
L V +Q + L E+ AL A+ GV+Y + G A + + L
Sbjct: 5 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64
Query: 120 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 179
A+ P+ N + I LT G D L ++YA N G+A
Sbjct: 65 AIRPDMPEVFNYLGIYLTQAGNF-----DAAYEAFDSVLELDPTYNYA--HLNRGIALYY 117
Query: 180 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE--CYQMALSIKPNFSQS 237
+ +A + +P+ L + + D + +
Sbjct: 118 GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI 177
Query: 238 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 297
+ + Q M+ + +E LG Y G + A ++ +
Sbjct: 178 VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237
Query: 298 IDPDSRNAGQNRLLAMNYINE 318
+ + + LL ++ + +
Sbjct: 238 NNVHNFVEHRYALLELSLLGQ 258
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 61.4 bits (147), Expect = 6e-11
Identities = 31/192 (16%), Positives = 58/192 (30%)
Query: 139 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 198
L ++ E + + + A +Y GV Y + +A + A P
Sbjct: 9 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP 68
Query: 199 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 258
E N LG+ N D A E + L + P ++ + N G+ G+ A + +
Sbjct: 69 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDL 128
Query: 259 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINE 318
+P L + + + K D + N +
Sbjct: 129 LAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQ 188
Query: 319 GHDDKLFEAHRD 330
++L D
Sbjct: 189 TLMERLKADATD 200
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 53.7 bits (127), Expect = 2e-08
Identities = 38/177 (21%), Positives = 68/177 (38%), Gaps = 4/177 (2%)
Query: 173 LGVAYGEMLKFDMAIVFYELAFHF----NPHCAEACNNLGVIYKDRDNLDKAVECYQMAL 228
L V L+ ++ + E + A+ GV+Y A + AL
Sbjct: 5 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64
Query: 229 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 288
+I+P+ + N LG+ T G DAA E + + +PTY A+ N G+ G LA
Sbjct: 65 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 124
Query: 289 IDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSW 345
D + DP+ LA ++E ++ + H + + ++ +
Sbjct: 125 QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFY 181
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 91.9 bits (226), Expect = 2e-20
Identities = 34/301 (11%), Positives = 76/301 (25%), Gaps = 34/301 (11%)
Query: 37 AGNTQDGIQKYYEALKIDP-----HYAPAYYNLGVVYSELMQYDTALGCYEKA------A 85
GN + + AL+ P A LG V + +L ++
Sbjct: 25 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH 84
Query: 86 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK-NNMAIALTDLGTKVK 144
+ I +G L++A E+ + + + + +
Sbjct: 85 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW 144
Query: 145 LEGDINQGVAYYKKALYY-----NWHYADAMYNLGVAYGEMLKFD-------MAIVFYEL 192
+++ A + + + L D
Sbjct: 145 AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 204
Query: 193 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL----NNLGVVYTVQ 248
+ + + A + ++ + A + + + L N+ +
Sbjct: 205 GKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL 264
Query: 249 GKMDAAAEMIEKAIAAN------PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 302
G+ + A ++E+ L LY AG S A LK+ +
Sbjct: 265 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT 324
Query: 303 R 303
Sbjct: 325 G 325
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 75.0 bits (182), Expect = 6e-15
Identities = 35/314 (11%), Positives = 71/314 (22%), Gaps = 34/314 (10%)
Query: 49 EALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA-----ALERPMYAEAYCNMGVIYK 103
+ ++ D +A V D A + A A +G +
Sbjct: 3 KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62
Query: 104 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 163
+G+L ++A ++ ++ + +L + +G + +KA
Sbjct: 63 CKGELTRSLALMQQTEQMARQH-DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI 121
Query: 164 WHY--------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP------------HCAEA 203
+ + D A +
Sbjct: 122 NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 181
Query: 204 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 263
G + R L++ S + + + + G AAA +
Sbjct: 182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 241
Query: 264 A----NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN----RLLAMNY 315
N + N+ G A E+ + R LL Y
Sbjct: 242 PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY 301
Query: 316 INEGHDDKLFEAHR 329
G
Sbjct: 302 WQAGRKSDAQRVLL 315
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 71.9 bits (174), Expect = 6e-14
Identities = 34/292 (11%), Positives = 80/292 (27%), Gaps = 30/292 (10%)
Query: 83 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 142
K E M+AE + N G+ + A + L P + +A + LG
Sbjct: 3 KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELP--PGWFYSRIVATSVLGEV 60
Query: 143 VKLEGDINQGVAYYKKAL------YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 196
+ +G++ + +A ++ + ++ A E AF
Sbjct: 61 LHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 120
Query: 197 NPHC--------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ------------ 236
+ LD+A + + + ++
Sbjct: 121 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 180
Query: 237 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 296
G + + +++ ++ + + A + ++ G + A +
Sbjct: 181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 240
Query: 297 KIDPDSR--NAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWD 346
K + + GQ R +A I G + + + L
Sbjct: 241 KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 292
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 62.6 bits (150), Expect = 6e-11
Identities = 29/250 (11%), Positives = 58/250 (23%), Gaps = 24/250 (9%)
Query: 4 ASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------ 57
A + + L L G Q + +A ++
Sbjct: 72 ALMQQTEQMARQH-DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP 130
Query: 58 --APAYYNLGVVYSELMQYDTALGCYEKAALERP-----MYAEAYCNMGVIYKNRGDLES 110
+ + D A + + RGDL++
Sbjct: 131 MHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDN 190
Query: 111 AIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKAL----YYNWHY 166
A + R + N + + ++ A ++ GD + + N
Sbjct: 191 ARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 250
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELA------FHFNPHCAEACNNLGVIYKDRDNLDKA 220
N+ A + +F+ A + E L +Y A
Sbjct: 251 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA 310
Query: 221 VECYQMALSI 230
AL +
Sbjct: 311 QRVLLDALKL 320
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 46.8 bits (109), Expect = 7e-06
Identities = 12/139 (8%), Positives = 37/139 (26%), Gaps = 5/139 (3%)
Query: 227 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT-----YAEAYNNLGVLYRD 281
+ ++ V G D A + + A+ P A + LG +
Sbjct: 4 DIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC 63
Query: 282 AGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQ 341
G ++ ++ +Q ++ + + + ++ +L ++
Sbjct: 64 KGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINE 123
Query: 342 YTSWDNTKDPERPLVIGYV 360
+ +
Sbjct: 124 QHLEQLPMHEFLVRIRAQL 142
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.2 bits (202), Expect = 2e-18
Identities = 33/209 (15%), Positives = 63/209 (30%), Gaps = 40/209 (19%)
Query: 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 83
AI L + G + + + + + ++ +N+G +Y+ L A + +
Sbjct: 5 AISLWNEGVLAADKKDWKGALDAF---SAVQDPHSRICFNIGCMYTILKNMTEAEKAFTR 61
Query: 84 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKV 143
+ A AY G++Y + AI + L
Sbjct: 62 SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG------------------- 102
Query: 144 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 203
NQ + Y L + + +YN+ Y + ++ A LA
Sbjct: 103 ------NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE---- 152
Query: 204 CNNLGVIYKDRDNLDKAVECYQMALSIKP 232
+DKA+EC +P
Sbjct: 153 --------PRHSKIDKAMECVWKQKLYEP 173
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.2 bits (176), Expect = 4e-15
Identities = 23/180 (12%), Positives = 56/180 (31%), Gaps = 21/180 (11%)
Query: 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 192
AI+L + G + D + + ++ +N+G Y + A +
Sbjct: 5 AISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTR 61
Query: 193 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 252
+ + + H A A G++Y + D A++ + AL +
Sbjct: 62 SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG------------------N 103
Query: 253 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 312
+ + E N+ +Y A + + + R++ ++ +
Sbjct: 104 QLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAME 163
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (88), Expect = 0.002
Identities = 11/89 (12%), Positives = 24/89 (26%), Gaps = 13/89 (14%)
Query: 44 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 103
I L+ YN+ +Y++ ++ A A +
Sbjct: 106 IDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS------------EP 153
Query: 104 NRGDLESAIACYERCLAVSPNFEIAKNNM 132
++ A+ C + P I +
Sbjct: 154 RHSKIDKAMECVWKQKLYEP-VVIPVGRL 181
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 82.3 bits (202), Expect = 8e-18
Identities = 28/246 (11%), Positives = 67/246 (27%), Gaps = 33/246 (13%)
Query: 81 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI------AKNNMAI 134
+E+AA + IY+ R +L A + +
Sbjct: 33 FEEAA-------DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYK 85
Query: 135 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 194
G V + + + + + ++ + AI YELA
Sbjct: 86 CFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAG 145
Query: 195 ------HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-------KPNFSQSLNNL 241
+ + +A + Y + + +
Sbjct: 146 EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205
Query: 242 GVVYTVQGKMDAAAEMIEKAIAANPTYAEA-----YNNLGVLYR--DAGSISLAIDAYEQ 294
G+ AAA +++ + +P +A++ +L D+ +S ++
Sbjct: 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265
Query: 295 CLKIDP 300
+++D
Sbjct: 266 FMRLDK 271
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.0 bits (126), Expect = 5e-08
Identities = 19/161 (11%), Positives = 42/161 (26%), Gaps = 17/161 (10%)
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAA 254
A+ C IY+ R L+ A + + A + + + G A
Sbjct: 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96
Query: 255 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL-----------KIDPDSR 303
+ +E AI + + + + Y + + + +
Sbjct: 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156
Query: 304 NAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTS 344
+ A +G + + + K M S
Sbjct: 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.4 bits (114), Expect = 2e-06
Identities = 13/123 (10%), Positives = 35/123 (28%), Gaps = 7/123 (5%)
Query: 45 QKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA-------LERPMYAEAYCN 97
++Y + + + + QY A Y K L + + +
Sbjct: 145 GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204
Query: 98 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYK 157
G+ D +A + + PNF ++ + + +++ +
Sbjct: 205 KGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264
Query: 158 KAL 160
+
Sbjct: 265 NFM 267
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 78.1 bits (191), Expect = 5e-17
Identities = 24/205 (11%), Positives = 62/205 (30%), Gaps = 16/205 (7%)
Query: 18 PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTA 77
P+A+ L + G L + + Y A+ +P A Y N + Y ++ Q + A
Sbjct: 2 PSAQ----ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQA 57
Query: 78 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 137
L +A +A+ +G + AIA +R +++ + + +
Sbjct: 58 LADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA- 116
Query: 138 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 197
+ ++ + ++ + + + + + + +
Sbjct: 117 -----------LRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGH 165
Query: 198 PHCAEACNNLGVIYKDRDNLDKAVE 222
I D ++
Sbjct: 166 EDDGHIRAQQACIEAKHDKYMADMD 190
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 77.3 bits (189), Expect = 8e-17
Identities = 29/197 (14%), Positives = 68/197 (34%), Gaps = 9/197 (4%)
Query: 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 192
A L + G ++ + + A Y +A+ N A N + Y +M + + A+
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 193 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 252
A + +A LG + ++ D+A+ Q A S+ + + + +
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD-----IPSALR 118
Query: 253 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 312
A + +I + E+ + + A ++ ++ + D + +
Sbjct: 119 IAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQAC- 177
Query: 313 MNYINEGHDDKLFEAHR 329
I HD + +
Sbjct: 178 ---IEAKHDKYMADMDE 191
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 76.5 bits (187), Expect = 2e-16
Identities = 22/139 (15%), Positives = 46/139 (33%)
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 260
A+ G +A CY A++ P + N + Y + + A +
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 261 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 320
A+ + +A+ LG + S AI ++ + + R + + + I +
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 123
Query: 321 DDKLFEAHRDWGKRFMRLY 339
E R + + Y
Sbjct: 124 RWNSIEERRIHQESELHSY 142
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 72.7 bits (177), Expect = 4e-15
Identities = 26/181 (14%), Positives = 50/181 (27%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 226
A + G K+ A Y A NP A N + Y ++A+ +
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 227 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 286
AL + ++ LG D A +++A + + +
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 123
Query: 287 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWD 346
E+ + + + + + A + E H D G + D
Sbjct: 124 RWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHD 183
Query: 347 N 347
Sbjct: 184 K 184
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 73.5 bits (180), Expect = 6e-15
Identities = 21/178 (11%), Positives = 52/178 (29%), Gaps = 8/178 (4%)
Query: 182 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 241
+ A+ A +P A ++ + + ++A E ++ + P + + L
Sbjct: 11 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 70
Query: 242 GVVY-TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 300
+ Q + D A + L + + Q ++
Sbjct: 71 RHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130
Query: 301 DSRNAGQNRLLAMNYINEGHDDKL---FEAHRDWGKRFMRLYSQYTSWDNTKDPERPL 355
+ + + + + + DD+L E G F+ + + K L
Sbjct: 131 EKGFLANDT--SFSDVRDI-DDRLGGYIELFSTAGNYFLVPIASINTL-EIKSATSLL 184
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 68.9 bits (168), Expect = 2e-13
Identities = 13/132 (9%), Positives = 32/132 (24%), Gaps = 1/132 (0%)
Query: 146 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 205
EG + Q + +A+ + A + F+ A + P +
Sbjct: 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 68
Query: 206 NLGVIYKDRDNLDKAVECY-QMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 264
L + K + + + + V + +E+ +
Sbjct: 69 QLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128
Query: 265 NPTYAEAYNNLG 276
N+
Sbjct: 129 RQEKGFLANDTS 140
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 65.4 bits (159), Expect = 3e-12
Identities = 14/141 (9%), Positives = 32/141 (22%), Gaps = 6/141 (4%)
Query: 37 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 96
G Q ++ EA+K P A + + ++ A ++ P Y
Sbjct: 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 68
Query: 97 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYY 156
+ + K + + +N + D Q
Sbjct: 69 QLRHLVKAAQARKDFAQGAAT------AKVLGENEELTKSLVSFNLSMVSQDYEQVSELA 122
Query: 157 KKALYYNWHYADAMYNLGVAY 177
+ + +
Sbjct: 123 LQIEELRQEKGFLANDTSFSD 143
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 63.9 bits (155), Expect = 9e-12
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 2/84 (2%)
Query: 248 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 307
+G++ A E++ +AI A+P A ++ L G A + Q +K+ P+
Sbjct: 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 68
Query: 308 NRLLAMNYINEGHDDKLFEAHRDW 331
L +
Sbjct: 69 Q--LRHLVKAAQARKDFAQGAATA 90
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 63.1 bits (153), Expect = 1e-11
Identities = 17/182 (9%), Positives = 40/182 (21%), Gaps = 9/182 (4%)
Query: 104 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYN 163
+ G L+ A+ + SP +++ L GD + +++
Sbjct: 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCID-------GDFERADEQLMQSIKLF 60
Query: 164 WHYADAMYNLGVAYGEMLKFDMAIV-FYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 222
Y L + + ++ E
Sbjct: 61 PEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSE 120
Query: 223 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 282
++ N+ D IE A + ++ L +
Sbjct: 121 LALQIEELRQEKGFLANDTSFSDVRDID-DRLGGYIELFSTAGNYFLVPIASINTLEIKS 179
Query: 283 GS 284
+
Sbjct: 180 AT 181
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 61.6 bits (149), Expect = 5e-11
Identities = 17/139 (12%), Positives = 40/139 (28%), Gaps = 9/139 (6%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+ +A+ A P A + + L + G+ + ++ +++K+ P Y P
Sbjct: 16 LELLIEAIKASPKD-------ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 68
Query: 63 NLGVVYSELMQYDTAL-GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 121
L + G L + D E + +
Sbjct: 69 QLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128
Query: 122 SPNFEIAKNNMAIA-LTDL 139
N+ + + + D+
Sbjct: 129 RQEKGFLANDTSFSDVRDI 147
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.4 bits (166), Expect = 2e-14
Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 2/125 (1%)
Query: 92 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 151
A +G + D ++A+ Y++ + P N A + G K +
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 152 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE--LAFHFNPHCAEACNNLGV 209
+ ++ A A +G +Y + K+ AI FY LA H P + C
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEK 123
Query: 210 IYKDR 214
I K++
Sbjct: 124 ILKEQ 128
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.8 bits (149), Expect = 4e-12
Identities = 25/108 (23%), Positives = 36/108 (33%), Gaps = 7/108 (6%)
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 260
A LG + + D A++ Y A + P + N VY +G + E+ EK
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 261 AIAANPTYAEAY-------NNLGVLYRDAGSISLAIDAYEQCLKIDPD 301
AI E Y +G Y AI Y + L
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.3 bits (145), Expect = 1e-11
Identities = 26/119 (21%), Positives = 40/119 (33%), Gaps = 1/119 (0%)
Query: 58 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 117
A LG + +DTAL Y+KA P N +Y +GD E+
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 118 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 176
+ V +A A +G E + +Y K+L + D + A
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQA 121
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.1 bits (142), Expect = 3e-11
Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 7/114 (6%)
Query: 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 83
A+ +LG + ++ Y +A ++DP N VY E Y+ EK
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 84 AALERPMYAEAYC-------NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 130
A E Y +G Y + AI Y + LA ++ K
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.3 bits (140), Expect = 6e-11
Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 8/116 (6%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 226
A LG + FD A+ Y+ A +P N +Y ++ + +K E +
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 227 ALSIKPNFS-------QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 275
A+ + ++ +G Y + K A K++A + T +
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKC 118
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.4 bits (135), Expect = 3e-10
Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 7/108 (6%)
Query: 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 192
A+ +LG + D + + +Y KA + + N Y E ++ E
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 193 AFHFNPHCAE-------ACNNLGVIYKDRDNLDKAVECYQMALSIKPN 233
A E A +G Y + A+ Y +L+
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.9 bits (105), Expect = 4e-06
Identities = 15/80 (18%), Positives = 30/80 (37%)
Query: 237 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 296
LG + D A + +KA +PT N +Y + G + + E+ +
Sbjct: 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65
Query: 297 KIDPDSRNAGQNRLLAMNYI 316
++ ++R + A I
Sbjct: 66 EVGRENREDYRQIAKAYARI 85
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (92), Expect = 2e-04
Identities = 21/87 (24%), Positives = 32/87 (36%)
Query: 3 VASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 62
+ Y KA DP+ A V + G K + I+ E + A AY
Sbjct: 24 LKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83
Query: 63 NLGVVYSELMQYDTALGCYEKAALERP 89
+G Y + +Y A+ Y K+ E
Sbjct: 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR 110
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 66.5 bits (161), Expect = 2e-13
Identities = 19/182 (10%), Positives = 47/182 (25%), Gaps = 26/182 (14%)
Query: 81 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 140
+E E+ A G +Y G A+ Y + ++ + A
Sbjct: 4 WEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKAS---- 59
Query: 141 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 200
A NL + Y ++ ++ A+ + A +
Sbjct: 60 ----------------------ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN 97
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 260
+ G + + A ++ L + P + + + + +
Sbjct: 98 EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYA 157
Query: 261 AI 262
+
Sbjct: 158 NM 159
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 59.2 bits (142), Expect = 8e-11
Identities = 26/133 (19%), Positives = 43/133 (32%), Gaps = 15/133 (11%)
Query: 166 YADAMYNLGVAYGEMLKFDMAIVFYELAFHF---------------NPHCAEACNNLGVI 210
A + G Y + K+ A++ Y + A NL +
Sbjct: 14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 73
Query: 211 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 270
Y KAVEC AL + + L G + + ++A EK + NP
Sbjct: 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 133
Query: 271 AYNNLGVLYRDAG 283
A + + + A
Sbjct: 134 ARLQIFMCQKKAK 146
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 58.0 bits (139), Expect = 2e-10
Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 15/132 (11%)
Query: 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKI---------------DPHYAPAYYNLGVVY 68
A ++ + GT G + +Y + + + A+ NL + Y
Sbjct: 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 74
Query: 69 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 128
+L +Y A+ C +KA + G + ESA +E+ L V+P + A
Sbjct: 75 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 134
Query: 129 KNNMAIALTDLG 140
+ + +
Sbjct: 135 RLQIFMCQKKAK 146
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 56.1 bits (134), Expect = 1e-09
Identities = 22/144 (15%), Positives = 43/144 (29%), Gaps = 15/144 (10%)
Query: 190 YELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI---------------KPNF 234
+E+ A G +Y +AV Y +S +
Sbjct: 4 WEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFL 63
Query: 235 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 294
+ NL + Y + A E +KA+ + + G A +E+
Sbjct: 64 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEK 123
Query: 295 CLKIDPDSRNAGQNRLLAMNYINE 318
L+++P ++ A + E
Sbjct: 124 VLEVNPQNKAARLQIFMCQKKAKE 147
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 46.1 bits (108), Expect = 2e-06
Identities = 18/136 (13%), Positives = 36/136 (26%), Gaps = 8/136 (5%)
Query: 57 YAPAYYNLGVVYSELMQYDTALGCYEKA--------ALERPMYAEAYCNMGVIYKNRGDL 108
A G VY + +Y A+ Y K L + + + N
Sbjct: 14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 73
Query: 109 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYAD 168
+ Y + + + L G L + ++K L N
Sbjct: 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 133
Query: 169 AMYNLGVAYGEMLKFD 184
A + + + + +
Sbjct: 134 ARLQIFMCQKKAKEHN 149
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 38.8 bits (89), Expect = 7e-04
Identities = 15/106 (14%), Positives = 33/106 (31%)
Query: 6 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 65
+ ++ K + L +L ++ +AL +D Y G
Sbjct: 46 EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRG 105
Query: 66 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 111
+ ++++A G +EK P A + + K +
Sbjct: 106 EAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNER 151
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.8 bits (152), Expect = 1e-12
Identities = 12/118 (10%), Positives = 28/118 (23%), Gaps = 5/118 (4%)
Query: 205 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE----- 259
+ ++L K + +Q + + D + I
Sbjct: 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEEL 62
Query: 260 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 317
+ + L V A+ L+ +P + A + L +
Sbjct: 63 LPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.4 bits (143), Expect = 3e-11
Identities = 16/113 (14%), Positives = 35/113 (30%), Gaps = 6/113 (5%)
Query: 102 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA-- 159
+ DL ++ A + + A L DI +G+ ++
Sbjct: 9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRY----NDDIRKGIVLLEELLP 64
Query: 160 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 212
D ++ L V + +++ A+ + P +A +I K
Sbjct: 65 KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.4 bits (138), Expect = 1e-10
Identities = 13/118 (11%), Positives = 31/118 (26%), Gaps = 5/118 (4%)
Query: 138 DLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM---AIVFYELAF 194
+ ++ D+ + ++ + D IV E
Sbjct: 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63
Query: 195 --HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 250
+ L V +KA++ + L +P +Q+ ++ K
Sbjct: 64 PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.4 bits (125), Expect = 7e-09
Identities = 10/111 (9%), Positives = 23/111 (20%), Gaps = 5/111 (4%)
Query: 29 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ---YDTALGCYEKAA 85
+ L + +K+ + + E+
Sbjct: 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63
Query: 86 --LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 134
+ + + V + E A+ L P AK +
Sbjct: 64 PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL 114
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.6 bits (110), Expect = 7e-07
Identities = 18/101 (17%), Positives = 27/101 (26%), Gaps = 6/101 (5%)
Query: 5 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI--DPHYAPAYY 62
+ +A K A L + + GI E L +
Sbjct: 21 KFQSEKAAGSVSKSTQFEYAWCLVRTRY----NDDIRKGIVLLEELLPKGSKEEQRDYVF 76
Query: 63 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 103
L V L +Y+ AL P +A +I K
Sbjct: 77 YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (87), Expect = 9e-04
Identities = 9/113 (7%), Positives = 19/113 (16%), Gaps = 8/113 (7%)
Query: 73 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES---AIACYERCLAVSPNFEIAK 129
++ + + I E L
Sbjct: 14 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK----- 68
Query: 130 NNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 182
+ L + + + Y + L A + M K
Sbjct: 69 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.1 bits (144), Expect = 5e-11
Identities = 27/179 (15%), Positives = 54/179 (30%), Gaps = 30/179 (16%)
Query: 87 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLE 146
E+ + G +Y G + A+ Y++ ++ N A
Sbjct: 8 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKA---------- 57
Query: 147 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 206
+ NL + + ++ F AI A + + + +
Sbjct: 58 ----------------QALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSR 101
Query: 207 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 265
G + ++ + A +Q L + PN + L V + A EK + AN
Sbjct: 102 RGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR----EKKLYAN 156
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (113), Expect = 5e-07
Identities = 23/138 (16%), Positives = 50/138 (36%), Gaps = 15/138 (10%)
Query: 24 AIVLTDLGTSLKLAGNTQDGIQKYYEA---------------LKIDPHYAPAYYNLGVVY 68
+ ++ + GT G + + +Y + K ++ NL + +
Sbjct: 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 72
Query: 69 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 128
+L + A+ KA + G + D E A A +++ L + PN + A
Sbjct: 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 132
Query: 129 KNNMAIALTDLGTKVKLE 146
K +A+ + ++ E
Sbjct: 133 KTQLAVCQQRIRRQLARE 150
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 1e-05
Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 15/133 (11%)
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMA---------------LSIKPNFSQSLNNLGVVY 245
+ G +Y +A+ Y+ + S NL + +
Sbjct: 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 72
Query: 246 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 305
AA E KA+ + + + G + LA +++ L++ P+++ A
Sbjct: 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 132
Query: 306 GQNRLLAMNYINE 318
+ I
Sbjct: 133 KTQLAVCQQRIRR 145
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 58.6 bits (140), Expect = 1e-10
Identities = 27/180 (15%), Positives = 48/180 (26%), Gaps = 29/180 (16%)
Query: 83 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 142
K + + +E N+G + + E AI Y + L
Sbjct: 18 KDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG------------------ 59
Query: 143 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 202
++ A + N+G +M + A+ A +P +
Sbjct: 60 -------SRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK 112
Query: 203 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 262
A ++ D+A+ + A I P L V EKA
Sbjct: 113 ALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK----EKAA 168
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 56.2 bits (134), Expect = 1e-09
Identities = 18/151 (11%), Positives = 50/151 (33%), Gaps = 16/151 (10%)
Query: 6 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA--------------- 50
+ + D ++ L ++G + + N + I+KY +
Sbjct: 9 FPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDAD 68
Query: 51 -LKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 109
K+ P N+G ++ + A+ +A P +A ++ + +
Sbjct: 69 GAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYD 128
Query: 110 SAIACYERCLAVSPNFEIAKNNMAIALTDLG 140
A+A ++ ++P + + + +
Sbjct: 129 QALADLKKAQEIAPEDKAIQAELLKVKQKIK 159
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.8 bits (125), Expect = 2e-08
Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 16/130 (12%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHF----------------NPHCAEACNNLGVI 210
++ + N+G + + ++MAI Y + P N+G
Sbjct: 27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 86
Query: 211 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 270
+ AV+ AL I P+ +++L + + D A ++KA P
Sbjct: 87 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 146
Query: 271 AYNNLGVLYR 280
L + +
Sbjct: 147 IQAELLKVKQ 156
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.5 bits (140), Expect = 1e-10
Identities = 26/144 (18%), Positives = 49/144 (34%), Gaps = 9/144 (6%)
Query: 92 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 151
AE Y D E+AI Y + + ++P+ I N ++A
Sbjct: 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-------TECYGY 62
Query: 152 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 211
+ +A+ + Y Y + + KF A+ YE PH +A
Sbjct: 63 ALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 122
Query: 212 K--DRDNLDKAVECYQMALSIKPN 233
K + ++A+ + S+ +
Sbjct: 123 KIVKQKAFERAIAGDEHKRSVVDS 146
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.5 bits (127), Expect = 6e-09
Identities = 21/145 (14%), Positives = 44/145 (30%), Gaps = 5/145 (3%)
Query: 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 192
A L D + +Y +A+ N A N +AY + A+
Sbjct: 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69
Query: 193 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 252
A + + A+ Y+ + +KP+ + + +
Sbjct: 70 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ-- 127
Query: 253 AAAEMIEKAIAANPTYAEAYNNLGV 277
+ E+AIA + ++L +
Sbjct: 128 ---KAFERAIAGDEHKRSVVDSLDI 149
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (120), Expect = 5e-08
Identities = 21/123 (17%), Positives = 42/123 (34%)
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 260
AE Y + + A++ Y A+ + P+ + N + Y A +
Sbjct: 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69
Query: 261 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 320
AI + Y + Y G A+ YE +K+ P ++A + +
Sbjct: 70 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 129
Query: 321 DDK 323
++
Sbjct: 130 FER 132
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.7 bits (117), Expect = 1e-07
Identities = 24/129 (18%), Positives = 40/129 (31%), Gaps = 2/129 (1%)
Query: 6 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 65
Y A+ AI + + + A+++D Y YY
Sbjct: 26 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA 85
Query: 66 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK--NRGDLESAIACYERCLAVSP 123
L ++ AL YE +P +A K + E AIA E +V
Sbjct: 86 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 145
Query: 124 NFEIAKNNM 132
+ +I +
Sbjct: 146 SLDIESMTI 154
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (94), Expect = 1e-04
Identities = 22/150 (14%), Positives = 42/150 (28%), Gaps = 19/150 (12%)
Query: 33 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALG-------CYEKAA 85
LK N + Y A+K + + Y +A
Sbjct: 12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI 71
Query: 86 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL 145
Y + Y G +A+ YE + V P+ + AK + K
Sbjct: 72 ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQK--- 128
Query: 146 EGDINQGVAYYKKALYYNWHYADAMYNLGV 175
+++A+ + H + +L +
Sbjct: 129 ---------AFERAIAGDEHKRSVVDSLDI 149
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 57.3 bits (137), Expect = 2e-10
Identities = 26/165 (15%), Positives = 47/165 (28%), Gaps = 25/165 (15%)
Query: 81 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 140
Y+ E+ A G + + ++ AI Y+ L + E + + +
Sbjct: 6 YDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD----- 60
Query: 141 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 200
NL Y + + AI + +
Sbjct: 61 --------------------KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN 100
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 245
+A LGV L++A E A S+ PN N+ +
Sbjct: 101 VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 54.2 bits (129), Expect = 3e-09
Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 16/133 (12%)
Query: 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH----------------YAPAYYNLGVV 67
A + + G + I KY EAL H NL
Sbjct: 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 76
Query: 68 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI 127
Y++ Y A+ K +A +GV G LE A + +++PN
Sbjct: 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 136
Query: 128 AKNNMAIALTDLG 140
+N+ + + L
Sbjct: 137 IRNSYELCVNKLK 149
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 49.2 bits (116), Expect = 2e-07
Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 16/134 (11%)
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQM----------------ALSIKPNFSQSLNNLGVV 244
A G + ++ +++A+ Y+ K NL
Sbjct: 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 76
Query: 245 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304
Y A + K + + +A LGV G + A + + ++P++ +
Sbjct: 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 136
Query: 305 AGQNRLLAMNYINE 318
+ L +N + E
Sbjct: 137 IRNSYELCVNKLKE 150
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 47.7 bits (112), Expect = 5e-07
Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 16/130 (12%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----------------AEACNNLGVI 210
A + G + + + + AIV Y+ A F H NL
Sbjct: 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 76
Query: 211 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 270
Y + KA++ L I N ++L LGV G ++ A E + KA + NP +
Sbjct: 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 136
Query: 271 AYNNLGVLYR 280
N+ +
Sbjct: 137 IRNSYELCVN 146
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 41.9 bits (97), Expect = 6e-05
Identities = 18/139 (12%), Positives = 40/139 (28%), Gaps = 23/139 (16%)
Query: 58 APAYYNLGVVYSELMQYDTALGCYEK----------------AALERPMYAEAYCNMGVI 101
A G + + + + A+ Y++ ++ + N+
Sbjct: 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 76
Query: 102 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 161
Y D AI + L + N A + +A G + + KA
Sbjct: 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFG-------FLEEAKENLYKAAS 129
Query: 162 YNWHYADAMYNLGVAYGEM 180
N + D + + ++
Sbjct: 130 LNPNNLDIRNSYELCVNKL 148
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.1 bits (131), Expect = 7e-10
Identities = 17/113 (15%), Positives = 37/113 (32%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 226
+ + G + D A+ Y A +PH +N Y + + KA E
Sbjct: 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62
Query: 227 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 279
+ +KP++ + + + + A E+ + + L +
Sbjct: 63 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.7 bits (125), Expect = 5e-09
Identities = 19/108 (17%), Positives = 36/108 (33%)
Query: 135 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 194
L + G K G+I+ + Y +A+ + H N AY + + A
Sbjct: 5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 64
Query: 195 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 242
P + + + + ++A Y+ L + N Q L
Sbjct: 65 DLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 112
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (113), Expect = 2e-07
Identities = 21/108 (19%), Positives = 38/108 (35%)
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 260
G N+D A++CY A+ + P+ +N Y +G A E K
Sbjct: 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62
Query: 261 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 308
+ P + + Y+ A YE+ LK + ++ +
Sbjct: 63 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEG 110
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.0 bits (110), Expect = 5e-07
Identities = 28/107 (26%), Positives = 39/107 (36%)
Query: 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 86
L + G GN D +Q Y EA+K+DPH Y N Y++ Y A K
Sbjct: 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 65
Query: 87 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 133
+P + + Y + E A YE L N K +
Sbjct: 66 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 112
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.6 bits (109), Expect = 7e-07
Identities = 16/121 (13%), Positives = 37/121 (30%), Gaps = 7/121 (5%)
Query: 92 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQ 151
G + G+++ A+ CY + + P+ + +N + +GD +
Sbjct: 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSA-------AYAKKGDYQK 55
Query: 152 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 211
K + + A + +F+ A YE + + L +
Sbjct: 56 AYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115
Query: 212 K 212
Sbjct: 116 A 116
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (94), Expect = 6e-05
Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 7/117 (5%)
Query: 58 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 117
G + D AL CY +A P Y N Y +GD + A +
Sbjct: 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62
Query: 118 CLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 174
+ + P++ + A AL L + Y++ L + + L
Sbjct: 63 TVDLKPDWGKGYSRKAAALEFL-------NRFEEAKRTYEEGLKHEANNPQLKEGLQ 112
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.4 bits (130), Expect = 7e-10
Identities = 21/93 (22%), Positives = 34/93 (36%)
Query: 90 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 149
+ AE +G + D E+ L EI+ + L L V +GD+
Sbjct: 3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL 62
Query: 150 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 182
++ + KK L + + A NL M K
Sbjct: 63 DKALLLTKKLLELDPEHQRANGNLKYFEYIMAK 95
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.1 bits (129), Expect = 8e-10
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 7/87 (8%)
Query: 201 AEACNNLGVIYKDRDNLDKAVECYQMALSI-------KPNFSQSLNNLGVVYTVQGKMDA 253
AE LG + + + AL + L+ L QG +D
Sbjct: 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64
Query: 254 AAEMIEKAIAANPTYAEAYNNLGVLYR 280
A + +K + +P + A NL
Sbjct: 65 ALLLTKKLLELDPEHQRANGNLKYFEY 91
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.0 bits (121), Expect = 1e-08
Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 7/91 (7%)
Query: 167 ADAMYNLGVAYGEMLKFDMAIVFYE-------LAFHFNPHCAEACNNLGVIYKDRDNLDK 219
A+ + LG + ++ E + L + +LDK
Sbjct: 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64
Query: 220 AVECYQMALSIKPNFSQSLNNLGVVYTVQGK 250
A+ + L + P ++ NL + K
Sbjct: 65 ALLLTKKLLELDPEHQRANGNLKYFEYIMAK 95
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.7 bits (110), Expect = 4e-07
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 7/90 (7%)
Query: 58 APAYYNLGVVYSELMQYDTALGCYEKAA-------LERPMYAEAYCNMGVIYKNRGDLES 110
A + LG V Y E+A + + +GDL+
Sbjct: 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64
Query: 111 AIACYERCLAVSPNFEIAKNNMAIALTDLG 140
A+ ++ L + P + A N+ +
Sbjct: 65 ALLLTKKLLELDPEHQRANGNLKYFEYIMA 94
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (84), Expect = 0.001
Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 5/94 (5%)
Query: 10 LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 69
L+A+ S++ L V + +++ E L
Sbjct: 3 LTAEDSFE-----LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY 57
Query: 70 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 103
+ D AL +K P + A N+
Sbjct: 58 QQGDLDKALLLTKKLLELDPEHQRANGNLKYFEY 91
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Score = 52.6 bits (124), Expect = 6e-08
Identities = 30/226 (13%), Positives = 65/226 (28%), Gaps = 7/226 (3%)
Query: 60 AYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 119
LG + + A +EKA + N+GV+Y +E +
Sbjct: 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAASFY 61
Query: 120 AVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 179
A + + + + + + + N+ + YY KA + A G+
Sbjct: 62 AKACDLNYSNGCHLLGNLY-YSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGK 120
Query: 180 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 239
++ D + + + C LG +Y K ++ + + S
Sbjct: 121 VVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPG 180
Query: 240 N----LGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 281
+ + + + A NLG + +
Sbjct: 181 CFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYN 226
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 46.7 bits (109), Expect = 1e-06
Identities = 17/141 (12%), Positives = 42/141 (29%), Gaps = 18/141 (12%)
Query: 91 YAEAYCNMGVIYK--NRGDLESAIACYERCLAVSPNFEI------------AKNNMAIAL 136
AY + + G+ + A A R + +S +A AL
Sbjct: 6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEAL 65
Query: 137 TDLGTKVKLEGDINQGVAYYKKALYYN----WHYADAMYNLGVAYGEMLKFDMAIVFYEL 192
L + + ++ + Y+ + N + A+Y+ +A + + A+ ++
Sbjct: 66 AGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 125
Query: 193 AFHFNPHCAEACNNLGVIYKD 213
+ +
Sbjct: 126 VVEMIEERKGETPGKERMMEV 146
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 45.9 bits (107), Expect = 3e-06
Identities = 15/143 (10%), Positives = 35/143 (24%), Gaps = 25/143 (17%)
Query: 201 AEACNNLGVIYK--DRDNLDKAVECYQMALSIKPNFSQ------------SLNNLGVVYT 246
A L + D+A + A+ I L
Sbjct: 7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA 66
Query: 247 VQGKMDAAAEMIEKAIAANPTYAEA-----------YNNLGVLYRDAGSISLAIDAYEQC 295
D A +KA+ E + + G + A+ +++
Sbjct: 67 GLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 126
Query: 296 LKIDPDSRNAGQNRLLAMNYINE 318
+++ + + + M +
Sbjct: 127 VEMIEERKGETPGKERMMEVAID 149
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 40.2 bits (93), Expect = 3e-04
Identities = 12/127 (9%), Positives = 18/127 (14%), Gaps = 12/127 (9%)
Query: 135 ALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 194
A G G Q + AL A
Sbjct: 13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFV------------EPFAT 60
Query: 195 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 254
A + + P L Y + + A
Sbjct: 61 ALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDA 120
Query: 255 AEMIEKA 261
+
Sbjct: 121 LGAYRRV 127
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.7 bits (94), Expect = 5e-04
Identities = 20/278 (7%), Positives = 63/278 (22%), Gaps = 33/278 (11%)
Query: 31 GTSLKLAGNTQDGIQKYYE-ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERP 89
+ + YE L + H+ +Y + + G A
Sbjct: 22 PLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNA----- 76
Query: 90 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDI 149
+ + A YER ++ + +
Sbjct: 77 ---------------KLFSDEAANIYERAISTLL------KKNMLLYFAYADYEESRMKY 115
Query: 150 NQGVAYYKKALYYNW-HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA-CNNL 207
+ + Y + L + ++ A
Sbjct: 116 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA 175
Query: 208 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 267
+ Y + A + +++ L + + + + + + + E+ + +
Sbjct: 176 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235
Query: 268 YAEA----YNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301
E + + G ++ + ++ +
Sbjct: 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.2 bits (89), Expect = 6e-04
Identities = 8/82 (9%), Positives = 14/82 (17%), Gaps = 15/82 (18%)
Query: 183 FDMAIVFYELAFHFNP-HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 241
+ + + E L + A + N Q
Sbjct: 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 113
Query: 242 GVVYTVQGKMDAAAEMIEKAIA 263
M+E I
Sbjct: 114 --------------SMVEDKIQ 121
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.4 bits (87), Expect = 0.001
Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 5/83 (6%)
Query: 131 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVF 189
N A L K D GV + +Y L + ++ ++ MA +
Sbjct: 40 NYAWGLI----KSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRY 95
Query: 190 YELAFHFNPHCAEACNNLGVIYK 212
+ F + + ++
Sbjct: 96 VDTLFEHERNNKQVGALKSMVED 118
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.7 bits (85), Expect = 0.002
Identities = 6/64 (9%), Positives = 16/64 (25%), Gaps = 1/64 (1%)
Query: 209 VIYKDRDNLDKAVECYQMALSIKP-NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 267
+ D ++ V+ + L L + G+ A ++
Sbjct: 46 IKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105
Query: 268 YAEA 271
+
Sbjct: 106 NKQV 109
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 35.9 bits (83), Expect = 0.004
Identities = 9/89 (10%), Positives = 20/89 (22%), Gaps = 3/89 (3%)
Query: 45 QKYYEALKIDPHYAPAY-YNLGVVYSE-LMQYDTALGCYEKAALERPM-YAEAYCNMGVI 101
Q+ + Y G++ S + + E E + +
Sbjct: 23 QQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIG 82
Query: 102 YKNRGDLESAIACYERCLAVSPNFEIAKN 130
G+ A + N +
Sbjct: 83 CYKLGEYSMAKRYVDTLFEHERNNKQVGA 111
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 145 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 37.1 bits (84), Expect = 0.002
Identities = 23/144 (15%), Positives = 50/144 (34%), Gaps = 24/144 (16%)
Query: 172 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN----------LDKAV 221
+ + +L F+ E + NP A+ G + + + +A+
Sbjct: 2 DTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAI 61
Query: 222 ECYQMALSIKPNFSQSLNNLGVVY-----------TVQGKMDAAAEMIEKAIAANPTYAE 270
++ AL I P +++ +G Y + D A + ++A+ P
Sbjct: 62 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 121
Query: 271 AYNNLGVLYRDAGSISLAIDAYEQ 294
+L + + L +AY+Q
Sbjct: 122 YLKSLEMTAKAPQ---LHAEAYKQ 142
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 145 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 36.8 bits (83), Expect = 0.003
Identities = 18/146 (12%), Positives = 31/146 (21%), Gaps = 17/146 (11%)
Query: 97 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK------------ 144
+ + E E +P L +L
Sbjct: 2 DTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAI 61
Query: 145 --LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 202
E + + Y + FD+A F++ A P
Sbjct: 62 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 121
Query: 203 ACNNLGVIYKDRDNLDKAVECYQMAL 228
+L + K E Y+ L
Sbjct: 122 YLKSLEMTAK---APQLHAEAYKQGL 144
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 788 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.98 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.95 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.94 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.88 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.88 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.86 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.85 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.81 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.8 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.79 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.73 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.62 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.61 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.58 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.57 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.55 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.55 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.55 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.54 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.53 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.53 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.52 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.51 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.41 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.41 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.4 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.4 | |
| d2iw1a1 | 370 | Lipopolysaccharide core biosynthesis protein RfaG | 99.38 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.36 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.34 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.34 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.33 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.32 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.32 | |
| d1rzua_ | 477 | Glycogen synthase 1, GlgA {Agrobacterium tumefacie | 99.32 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.31 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.3 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.29 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.28 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.27 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.26 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.25 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.23 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.22 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.2 | |
| d2bisa1 | 437 | Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI | 99.19 | |
| d2bfwa1 | 196 | Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI | 99.02 | |
| d2f9fa1 | 166 | First mannosyl transferase WbaZ {Archaeoglobus ful | 99.0 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.94 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.91 | |
| d1uqta_ | 456 | Trehalose-6-phosphate synthase, OtsA {Escherichia | 98.87 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.86 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.85 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.78 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.68 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.55 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.47 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.98 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.93 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.83 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.77 | |
| d1rrva_ | 401 | TDP-vancosaminyltransferase GftD {Amycolatopsis or | 97.58 | |
| d1pn3a_ | 391 | TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi | 97.51 | |
| d1iira_ | 401 | UDP-glucosyltransferase GtfB {Amycolatopsis orient | 97.43 | |
| d2c1xa1 | 450 | UDP glucose:flavonoid 3-o-glucosyltransferase {Gra | 97.29 | |
| d2pq6a1 | 473 | (Iso)flavonoid glycosyltransferase {Medicago trunc | 97.28 | |
| d1f0ka_ | 351 | Peptidoglycan biosynthesis glycosyltransferase Mur | 96.97 | |
| d2vcha1 | 471 | Hydroquinone glucosyltransferase {Thale cress (Ara | 96.62 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.53 | |
| d2acva1 | 461 | Triterpene UDP-glucosyl transferase UGT71G1 {Medic | 96.39 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.29 | |
| d1v4va_ | 373 | UDP-N-acetylglucosamine 2-epimerase {Thermus therm | 95.89 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.73 | |
| d1o6ca_ | 377 | UDP-N-acetylglucosamine 2-epimerase {Bacillus subt | 94.95 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 94.82 | |
| d1f6da_ | 376 | UDP-N-acetylglucosamine 2-epimerase {Escherichia c | 92.43 | |
| d1pswa_ | 348 | ADP-heptose LPS heptosyltransferase II {Escherichi | 85.46 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2e-31 Score=287.56 Aligned_cols=302 Identities=28% Similarity=0.385 Sum_probs=273.5
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|++.|+++++.+|++..+ +..+|.++...|++++|+..|+++++.+|+++.++..+|.+|..+|++++|+..+
T Consensus 18 A~~~~~~~l~~~p~~~~~-------~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~ 90 (388)
T d1w3ba_ 18 AERHCMQLWRQEPDNTGV-------LLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90 (388)
T ss_dssp HHHHHHHHHHHCTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccc
Confidence 789999999999999887 6777888888999999999999999999999999999999999999999999998
Q ss_pred HHHHHhC--------------------------------------------------------------------CCCHH
Q 003891 82 EKAALER--------------------------------------------------------------------PMYAE 93 (788)
Q Consensus 82 ~kal~~~--------------------------------------------------------------------p~~~~ 93 (788)
.++.+.+ |++..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (388)
T d1w3ba_ 91 RHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV 170 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhH
Confidence 8776543 34556
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 003891 94 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL 173 (788)
Q Consensus 94 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 173 (788)
++..+|.++...|++++|...++++++.+|++..++..+ |.++...|++++|+..++++....+.....+..+
T Consensus 171 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 243 (388)
T d1w3ba_ 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINL-------GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH-------HHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHH-------hhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHH
Confidence 788889999999999999999999999999987655544 4555557799999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 003891 174 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 253 (788)
Q Consensus 174 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e 253 (788)
|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...|.+...+..++.++...|++++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 323 (388)
T d1w3ba_ 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCC
Q 003891 254 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 319 (788)
Q Consensus 254 A~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g 319 (788)
|++.|+++++++|+++.+++.+|.+|..+|++++|+++|+++++++|++..++.++ +..|...|
T Consensus 324 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l--g~~~~~~~ 387 (388)
T d1w3ba_ 324 AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM--GNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHH--HHHHHHTC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999988774 44444433
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=8.4e-30 Score=274.68 Aligned_cols=301 Identities=26% Similarity=0.416 Sum_probs=279.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 107 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~ 107 (788)
+.+|..+++.|++++|++.|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.+|...|+
T Consensus 3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcc
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHH-------------------------------------------------------
Q 003891 108 LESAIACYERCLAVSPNFEIAKNNM------------------------------------------------------- 132 (788)
Q Consensus 108 ~~~A~~~~~~al~~~p~~~~~~~~l------------------------------------------------------- 132 (788)
+++|+..+.++.+..+.........
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhh
Confidence 9999999999999888765432221
Q ss_pred ------HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH
Q 003891 133 ------AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 206 (788)
Q Consensus 133 ------a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 206 (788)
+.++..+|..+...+++++|...++++++.+|++..++..+|.++...|++++|+..++++....+.....+..
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 242 (388)
T d1w3ba_ 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHH
Confidence 23345567778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 003891 207 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 286 (788)
Q Consensus 207 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~ 286 (788)
+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|++.+++++...|.+...+..++.++...|+++
T Consensus 243 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 322 (388)
T d1w3ba_ 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHHHHHHH
Q 003891 287 LAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 330 (788)
Q Consensus 287 eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~~~~~~ 330 (788)
+|++.|+++++++|++..++.+ ++..|...|+.+++.+.+++
T Consensus 323 ~A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~ 364 (388)
T d1w3ba_ 323 EAVRLYRKALEVFPEFAAAHSN--LASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHH--HHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999888765 67788889999888776554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.3e-26 Score=244.97 Aligned_cols=263 Identities=17% Similarity=0.194 Sum_probs=188.4
Q ss_pred HHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 5 SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 84 (788)
Q Consensus 5 ~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ka 84 (788)
.|++++...++++... ....+..|..++..|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++
T Consensus 3 ~~~~~~~~~~~n~~~~---~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 79 (323)
T d1fcha_ 3 TYDKGYQFEEENPLRD---HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRC 79 (323)
T ss_dssp HHHCCCCCCSSCTTTT---CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chHHhHhhcccCCCcc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhh
Confidence 4666666665544210 0114678999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH--------HHHhhhhhhhcCCHHHHHHHH
Q 003891 85 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA--------LTDLGTKVKLEGDINQGVAYY 156 (788)
Q Consensus 85 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--------l~~lg~~~~~~g~~~~A~~~~ 156 (788)
++++|++...+..+|.+|...|++++|++.+++++...|............ .......+...+.+.+|+..|
T Consensus 80 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 80 LELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHH
T ss_pred hccccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHH
Confidence 999999999999999999999999999999999999998754321111000 011111222334566666666
Q ss_pred HHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003891 157 KKALYYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 234 (788)
Q Consensus 157 ~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 234 (788)
+++++.+|+ ++.++..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+.+|+++++.+|++
T Consensus 160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (323)
T d1fcha_ 160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 239 (323)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhcc
Confidence 666666655 345566666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 003891 235 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 270 (788)
Q Consensus 235 ~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~ 270 (788)
+.++.++|.+|..+|++++|+..|+++++++|++..
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 275 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 275 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChh
Confidence 666666666666666666666666666666665543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2e-25 Score=235.87 Aligned_cols=243 Identities=22% Similarity=0.304 Sum_probs=214.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 003891 58 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 137 (788)
Q Consensus 58 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 137 (788)
....+..|..++..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+.+|+++++++|++...+..++.++
T Consensus 19 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~- 97 (323)
T d1fcha_ 19 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF- 97 (323)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccc-
Confidence 3456889999999999999999999999999999999999999999999999999999999999999987666555554
Q ss_pred HhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHcCChHHHHHHHHHHHhcCCC--C
Q 003891 138 DLGTKVKLEGDINQGVAYYKKALYYNWHYADA---------------MYNLGVAYGEMLKFDMAIVFYELAFHFNPH--C 200 (788)
Q Consensus 138 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~---------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~ 200 (788)
...|++++|++.+++++...|..... .......+...+.+.+|+..|+++++.+|+ +
T Consensus 98 ------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~ 171 (323)
T d1fcha_ 98 ------TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSID 171 (323)
T ss_dssp ------HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCC
T ss_pred ------cccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccc
Confidence 45679999999999999998875332 111222345567789999999999999887 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 280 (788)
Q Consensus 201 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~ 280 (788)
+.++..+|.++...|++++|+.+|++++..+|+++.++..+|.++...|++++|++.|+++++++|+++.+++.+|.+|.
T Consensus 172 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 251 (323)
T d1fcha_ 172 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI 251 (323)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChhhHH
Q 003891 281 DAGSISLAIDAYEQCLKIDPDSRNAGQ 307 (788)
Q Consensus 281 ~~g~~~eA~~~~~~al~l~p~~~~a~~ 307 (788)
.+|++++|+++|+++++++|++..+..
T Consensus 252 ~~g~~~~A~~~~~~al~l~p~~~~~~~ 278 (323)
T d1fcha_ 252 NLGAHREAVEHFLEALNMQRKSRGPRG 278 (323)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred HCCCHHHHHHHHHHHHHhCCcChhhhh
Confidence 999999999999999999999876543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=2e-21 Score=204.22 Aligned_cols=216 Identities=13% Similarity=0.121 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003891 23 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM-QYDTALGCYEKAALERPMYAEAYCNMGVI 101 (788)
Q Consensus 23 la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~kal~~~p~~~~~~~~la~~ 101 (788)
.+.++..+|.++.+.+.+++|+++++++++++|++..+|+++|.++...| ++++|+..++++++.+|++..+|..+|.+
T Consensus 42 ~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 42 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Confidence 45557777888888888888888888888888888888888888888876 48888888888888888888888888888
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003891 102 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML 181 (788)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 181 (788)
+..+|++++|++.++++++++|++..++.+++.++..+ +++++|++.++++++++|.+..+|.++|.++...+
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~-------~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~ 194 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF-------KLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT 194 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-------TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHcc
Confidence 88888888888888888888888877666666555554 47888888888888888888888888888877766
Q ss_pred C------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHH
Q 003891 182 K------FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF--SQSLNNLGVVYT 246 (788)
Q Consensus 182 ~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~la~~~~ 246 (788)
. +++|++.+.++++.+|++..+|++++.++... ..+++...+++++++.|+. ..++..++.+|.
T Consensus 195 ~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 195 GYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred ccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 5 46777777777887887777777777765443 3567777777777766543 444555555543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.5e-21 Score=205.15 Aligned_cols=239 Identities=11% Similarity=0.101 Sum_probs=204.4
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCcHHHHH
Q 003891 52 KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKN 130 (788)
Q Consensus 52 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~ 130 (788)
..+|+..+++..+|.++.+.+.+++|++.++++++++|.+..+|+++|.++...| ++++|+..++++++++|++..++.
T Consensus 37 ~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~ 116 (315)
T d2h6fa1 37 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH 116 (315)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3456678899999999999999999999999999999999999999999999987 599999999999999999988777
Q ss_pred HHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 003891 131 NMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 210 (788)
Q Consensus 131 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 210 (788)
.++.++.. .|++++|++.++++++++|++..+|.++|.++...|++++|++.++++++++|.+..+|+++|.+
T Consensus 117 ~~~~~~~~-------l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~ 189 (315)
T d2h6fa1 117 HRRVLVEW-------LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFV 189 (315)
T ss_dssp HHHHHHHH-------HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHhHHHHh-------hccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHH
Confidence 77666665 45999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHc
Q 003891 211 YKDRDN------LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDA 282 (788)
Q Consensus 211 ~~~~g~------~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~--~~~~~~la~~~~~~ 282 (788)
+...+. +++|+..+.++++.+|++..++..++.++... ..+++.+.+++++++.|+. +.++..++.+|...
T Consensus 190 l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~ 268 (315)
T d2h6fa1 190 ISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM 268 (315)
T ss_dssp HHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHH
Confidence 888776 67899999999999999999999999886554 4688889999998887754 55666777776543
Q ss_pred --CCHHHHHHHHHHHHhh
Q 003891 283 --GSISLAIDAYEQCLKI 298 (788)
Q Consensus 283 --g~~~eA~~~~~~al~l 298 (788)
++.+.+...+++++++
T Consensus 269 ~~~~~~~~~~~~~ka~~l 286 (315)
T d2h6fa1 269 LENQCDNKEDILNKALEL 286 (315)
T ss_dssp HHTTCSSHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 4444555555555443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.86 E-value=4.2e-22 Score=211.57 Aligned_cols=264 Identities=9% Similarity=-0.068 Sum_probs=234.2
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 003891 36 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL----------MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 36 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----------g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~ 105 (788)
..+..++|+.+++++++.+|++..+|...+.++... |++++|+.+++++++.+|++..++..+|.++...
T Consensus 41 ~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~ 120 (334)
T d1dcea1 41 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120 (334)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC
T ss_pred cccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHh
Confidence 334458999999999999999999998888776654 3489999999999999999999999999998887
Q ss_pred CC--HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 003891 106 GD--LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 183 (788)
Q Consensus 106 g~--~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 183 (788)
++ +++|+..++++++.+|++...+. ...|.++...+.+++|+.+++++++.+|.+..++..+|.++..+|++
T Consensus 121 ~~~~~~~a~~~~~~al~~~~~~~~~~~------~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~ 194 (334)
T d1dcea1 121 PEPNWARELELCARFLEADERNFHCWD------YRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ 194 (334)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHH------HHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred ccccHHHHHHHHHHHHhhCchhhhhhh------hHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCH
Confidence 65 89999999999999999875543 34456666688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003891 184 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 263 (788)
Q Consensus 184 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~ 263 (788)
++|+..++++++..|.....+. .+...+..+++...+.+++...|.....+..++.++...+++.+|+..+.+++.
T Consensus 195 ~~A~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 270 (334)
T d1dcea1 195 PDSGPQGRLPENVLLKELELVQ----NAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEP 270 (334)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHH----HHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhHHhHHHHHHHHH----HHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999888888776544433 345668888999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhH
Q 003891 264 ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 309 (788)
Q Consensus 264 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~ 309 (788)
.+|.+..++..+|.++..+|++++|+++|+++++++|++...+.++
T Consensus 271 ~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L 316 (334)
T d1dcea1 271 ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 316 (334)
T ss_dssp TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 9999999999999999999999999999999999999887776654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.85 E-value=3.1e-22 Score=212.59 Aligned_cols=273 Identities=10% Similarity=-0.039 Sum_probs=238.7
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHH---HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDL---GTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ--YDT 76 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~l---g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~ 76 (788)
|++.++++|+.+|++..+|..++.++..+ +..+...|++++|+.+++++++.+|++..+|+.+|.++...++ +++
T Consensus 48 al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~ 127 (334)
T d1dcea1 48 VLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAR 127 (334)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHH
Confidence 78899999999999999988877776554 4457778889999999999999999999999999999888765 899
Q ss_pred HHHHHHHHHHhCCCCHHHH-HHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHH
Q 003891 77 ALGCYEKAALERPMYAEAY-CNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAY 155 (788)
Q Consensus 77 A~~~~~kal~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~ 155 (788)
|+..++++++.+|.+..++ ...|.++...+++++|+..++++++++|.+..++.+++.++..++ ++++|+..
T Consensus 128 a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~-------~~~~A~~~ 200 (334)
T d1dcea1 128 ELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH-------PQPDSGPQ 200 (334)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS-------CCCCSSSC
T ss_pred HHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc-------CHHHHHHH
Confidence 9999999999999998886 567889999999999999999999999999888877777776655 66777777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 003891 156 YKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 235 (788)
Q Consensus 156 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 235 (788)
++++++..|..... ...+...+..+++...+.+++...|.....+..++.++...+++.+|+..+.++++.+|.+.
T Consensus 201 ~~~~~~~~~~~~~~----~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 276 (334)
T d1dcea1 201 GRLPENVLLKELEL----VQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCL 276 (334)
T ss_dssp CSSCHHHHHHHHHH----HHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHhHHhHHHHHHH----HHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHH
Confidence 76666665544433 33456678888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 003891 236 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 285 (788)
Q Consensus 236 ~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~ 285 (788)
.++..+|.++...|++++|+++|+++++++|.....|..|+..+.....+
T Consensus 277 ~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~e~~~ 326 (334)
T d1dcea1 277 LTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSV 326 (334)
T ss_dssp HHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhHhhHH
Confidence 99999999999999999999999999999999999999998888754333
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=2.5e-19 Score=181.97 Aligned_cols=221 Identities=16% Similarity=0.107 Sum_probs=134.9
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 81 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 81 (788)
|+..+++++...+.... ..+.+++.+|.+|...|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|
T Consensus 18 al~~~~e~l~~~~~~~~---~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 18 ILARMEQILASRALTDD---ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHTSSCCCHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCCH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 45667777765553322 356678888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHH
Q 003891 82 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY 161 (788)
Q Consensus 82 ~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~ 161 (788)
+++++++|+++.++..+|.++..+|++++|+..|+++++.+|++......++..... .+..+.+.........
T Consensus 95 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 95 DSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQK-------LDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------HCHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHH-------hhhHHHHHHHHHHhhc
Confidence 888888888888888888888888888888888888888888776554443333322 2233333333333333
Q ss_pred hCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003891 162 YNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 234 (788)
Q Consensus 162 ~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 234 (788)
..+..... .+...+.. .+..+.+...+.......|....+++++|.++...|++++|+.+|++++..+|++
T Consensus 168 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 242 (259)
T d1xnfa_ 168 SDKEQWGW--NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 242 (259)
T ss_dssp SCCCSTHH--HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred cchhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 33332211 11111111 1112233333333333334444455555555555555555555555555555543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=1.1e-18 Score=177.17 Aligned_cols=228 Identities=16% Similarity=0.115 Sum_probs=125.4
Q ss_pred ChHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 003891 39 NTQDGIQKYYEALKIDP----HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 114 (788)
Q Consensus 39 ~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 114 (788)
+.+.|+..+++++...+ ..+.+++.+|.+|...|++++|+..|+++++++|+++.+++.+|.+|..+|++++|++.
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 44556666666665422 23456666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003891 115 YERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 194 (788)
Q Consensus 115 ~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 194 (788)
|+++++++|++..++.+++.++ ...|++++|++.|+++++.+|++......++..+...+..+.+........
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~-------~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIAL-------YYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 166 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHH-------HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred hhHHHHHHhhhhhhHHHHHHHH-------HHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 6666666666554433333332 223455555555555555555555555555544444444433333333333
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003891 195 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 274 (788)
Q Consensus 195 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~ 274 (788)
...+..... .+.. ...+. ....+.++.+...+.......|....++++
T Consensus 167 ~~~~~~~~~--~~~~--~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (259)
T d1xnfa_ 167 KSDKEQWGW--NIVE--FYLGN----------------------------ISEQTLMERLKADATDNTSLAEHLSETNFY 214 (259)
T ss_dssp HSCCCSTHH--HHHH--HHTTS----------------------------SCHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred ccchhhhhh--hHHH--HHHHH----------------------------HHHHHHHHHHHHHHHHhhhcCcccHHHHHH
Confidence 322222110 0000 00110 011223444444444555555566667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChhh
Q 003891 275 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 305 (788)
Q Consensus 275 la~~~~~~g~~~eA~~~~~~al~l~p~~~~a 305 (788)
+|.+|..+|++++|+.+|+++++.+|++...
T Consensus 215 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 245 (259)
T d1xnfa_ 215 LGKYYLSLGDLDSATALFKLAVANNVHNFVE 245 (259)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 7888888888888888888888777776433
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=1.8e-17 Score=174.72 Aligned_cols=279 Identities=13% Similarity=-0.009 Sum_probs=233.5
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------C
Q 003891 23 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNLGVVYSELMQYDTALGCYEKAALERPM------Y 91 (788)
Q Consensus 23 la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~------~ 91 (788)
.+++....|.++...|++++|+.+|+++++..|.+ ..++..+|.++...|++++|+..|+++++..+. .
T Consensus 11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 90 (366)
T d1hz4a_ 11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 90 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence 45567778999999999999999999999999886 457889999999999999999999999886443 2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCC----
Q 003891 92 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-IAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY---- 166 (788)
Q Consensus 92 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---- 166 (788)
...+..++.++...|++..|...+.+++.+.+... ......+.++..+|.++...|+++++...+.+++...+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 170 (366)
T d1hz4a_ 91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 170 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhh
Confidence 45788999999999999999999999987643211 0112234566778888888999999999999999886643
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----
Q 003891 167 -ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---- 234 (788)
Q Consensus 167 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---- 234 (788)
...+...+..+...+++.++...+.++...... ...++..++.++...|++++|...+++++...+.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 250 (366)
T d1hz4a_ 171 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 250 (366)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHH
Confidence 457788899999999999999999998876332 24567888999999999999999999999887654
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 235 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 235 ~~~~~~la~~~~~~g~~~eA~~~l~kal~~------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~ 301 (788)
...+.++|.++...|++++|+..+++++.. .|....++..+|.+|..+|++++|++.+++++++.+.
T Consensus 251 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~ 323 (366)
T d1hz4a_ 251 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 323 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence 456788999999999999999999999864 3445678999999999999999999999999987543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=6.7e-16 Score=162.47 Aligned_cols=261 Identities=12% Similarity=-0.021 Sum_probs=217.4
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHH
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYD 75 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~ 75 (788)
|++.|+++|+..|++... ..+.++..+|.++...|++++|+..|+++++..+.. ..++..++.++...|++.
T Consensus 31 A~~~~~~aL~~~~~~~~~--~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (366)
T d1hz4a_ 31 AERLAKLALEELPPGWFY--SRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQ 108 (366)
T ss_dssp HHHHHHHHHHTCCTTCHH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhCcCCCcH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999987654 245568889999999999999999999999875432 457889999999999999
Q ss_pred HHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcC
Q 003891 76 TALGCYEKAALERP--------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG 147 (788)
Q Consensus 76 ~A~~~~~kal~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g 147 (788)
.|...+.+++...+ .....+..+|.++...|+++.|...+++++...+...... ....+...+..+...+
T Consensus 109 ~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 186 (366)
T d1hz4a_ 109 TAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ--QLQCLAMLIQCSLARG 186 (366)
T ss_dssp HHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG--GHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhh--HHHHHHHHHHHHHhhh
Confidence 99999999987532 1245778899999999999999999999999877644322 2345666777788889
Q ss_pred CHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCC
Q 003891 148 DINQGVAYYKKALYYNWH-------YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDN 216 (788)
Q Consensus 148 ~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~ 216 (788)
++.++...+.++...... ...++..++.++...|++++|...+++++...+.+ ...+.++|.++...|+
T Consensus 187 ~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 266 (366)
T d1hz4a_ 187 DLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGE 266 (366)
T ss_dssp CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCC
Confidence 999999999998876433 23467788999999999999999999999886653 5677889999999999
Q ss_pred HHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 003891 217 LDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 266 (788)
Q Consensus 217 ~~eA~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p 266 (788)
+++|+.++++++.. .|....++..+|.+|..+|++++|++.+++++++.+
T Consensus 267 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 267 FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 99999999999854 344567899999999999999999999999998743
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.1e-16 Score=178.55 Aligned_cols=232 Identities=13% Similarity=0.066 Sum_probs=162.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 003891 42 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 121 (788)
Q Consensus 42 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 121 (788)
+|+++|++|+++.|+.+++++++|.++..++++++| |++++..+|+....+...+.+.. ..+..+++.+++..+.
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~--~~y~~~ie~~r~~~k~ 78 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWN--HAFKNQITTLQGQAKN 78 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHH--HHTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHH--HHHHHHHHHHHHhccc
Confidence 799999999999999999999999999999999886 89999999987666544433321 2356788888888765
Q ss_pred CCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH
Q 003891 122 SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA 201 (788)
Q Consensus 122 ~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 201 (788)
......... ....++.++...+.|++|+..+++++.++|++...+.++|..+...|++++|+..+++++..++ .
T Consensus 79 ~~~~~~~~~----~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~ 152 (497)
T d1ya0a1 79 RANPNRSEV----QANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--Q 152 (497)
T ss_dssp SSCTTTTHH----HHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--H
T ss_pred ccCccHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--H
Confidence 432211110 0111233444567889999999999999999999999999999999999999999999988765 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 202 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 281 (788)
Q Consensus 202 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~ 281 (788)
.++.++|.++...|++++|+.+|++|++++|++...++++|.++...|++.+|+.+|.+++...|..+.++.+|+.++.+
T Consensus 153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 68889999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred cCC
Q 003891 282 AGS 284 (788)
Q Consensus 282 ~g~ 284 (788)
..+
T Consensus 233 ~~~ 235 (497)
T d1ya0a1 233 ALE 235 (497)
T ss_dssp HTT
T ss_pred hhh
Confidence 543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1.9e-16 Score=176.64 Aligned_cols=223 Identities=13% Similarity=0.119 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHH
Q 003891 75 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 154 (788)
Q Consensus 75 ~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~ 154 (788)
-+|+++|++|+++.|+.+.++.++|.++..++++++| |++++..+|+....+......+. ..+.++++
T Consensus 3 ~eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~---------~~y~~~ie 70 (497)
T d1ya0a1 3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWN---------HAFKNQIT 70 (497)
T ss_dssp HHHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHH---------HHTHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHH---------HHHHHHHH
Confidence 3799999999999999999999999999999999876 89999999877655433222221 13567788
Q ss_pred HHHHHHHhCC--CCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 003891 155 YYKKALYYNW--HYAD-AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 231 (788)
Q Consensus 155 ~~~~al~~~p--~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 231 (788)
.+++..+... +... ....++.++...+.|+.|+..+++++..+|++...+.++|..+.+.|++++|+..+++++..+
T Consensus 71 ~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 150 (497)
T d1ya0a1 71 TLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI 150 (497)
T ss_dssp HHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHH
T ss_pred HHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC
Confidence 8888776542 2222 233456667778889999999999999999999999999999999999999999999999876
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHH
Q 003891 232 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 311 (788)
Q Consensus 232 p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~ll 311 (788)
+ ..++.++|.++...|++++|+.+|++|++++|++...+++||.++...|++.+|+.+|.+++..+|.++.++.|+..
T Consensus 151 ~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~ 228 (497)
T d1ya0a1 151 C--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQK 228 (497)
T ss_dssp H--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 5 46889999999999999999999999999999999999999999999999999999999999999999999988643
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.58 E-value=9.3e-15 Score=150.83 Aligned_cols=180 Identities=14% Similarity=0.056 Sum_probs=114.3
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHH
Q 003891 39 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER------PMYAEAYCNMGVIYKNRGDLESAI 112 (788)
Q Consensus 39 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~------p~~~~~~~~la~~~~~~g~~~~A~ 112 (788)
+|++|.++|.++ |.+|...+++++|+.+|++++++. +....++.++|.+|..+|++++|+
T Consensus 32 ~~~~Aa~~y~~a--------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~ 97 (290)
T d1qqea_ 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (290)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 456666666554 778888889999999999888762 223568899999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhh-cCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHH
Q 003891 113 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKL-EGDINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFDM 185 (788)
Q Consensus 113 ~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~ 185 (788)
++|++++++.+.... ....+.++..+|.++.. .+++++|+++|++++++.+.. ..++..+|.++..+|++++
T Consensus 98 ~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~ 176 (290)
T d1qqea_ 98 DSLENAIQIFTHRGQ-FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (290)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhhHHhhhccc-chhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHH
Confidence 999999987654431 22234556666666643 477777777777776553221 2345555666666666666
Q ss_pred HHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003891 186 AIVFYELAFHFNPHC-------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 233 (788)
Q Consensus 186 A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 233 (788)
|++.|++++...+.. ...+...+.++...|++..|...++++++.+|.
T Consensus 177 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~ 231 (290)
T d1qqea_ 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (290)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred HHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 666666655554432 123344555555555555555555555555443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=3.8e-14 Score=146.16 Aligned_cols=212 Identities=14% Similarity=0.072 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Q 003891 20 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID------PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-- 91 (788)
Q Consensus 20 ~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~-- 91 (788)
+..-+..|...|.+|...|++++|+.+|.++++.. +....++.++|.+|..+|++++|+.+|++++++.+..
T Consensus 33 ~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~ 112 (290)
T d1qqea_ 33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ 112 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhccc
Confidence 34557789999999999999999999999999873 2235689999999999999999999999999875543
Q ss_pred ----HHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCC
Q 003891 92 ----AEAYCNMGVIYKN-RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHY 166 (788)
Q Consensus 92 ----~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 166 (788)
..++..+|.+|.. .|++++|+++|++++++.+.... ....+.++..+|.++...|++++|+..|++++...+..
T Consensus 113 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~-~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~ 191 (290)
T d1qqea_ 113 FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS-VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred chhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc-hhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccc
Confidence 5678899998865 69999999999999987543321 12346678889999999999999999999999987765
Q ss_pred H-------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHH--cCCHHHHHHHHHHHHhhCC
Q 003891 167 A-------DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE-----ACNNLGVIYKD--RDNLDKAVECYQMALSIKP 232 (788)
Q Consensus 167 ~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~--~g~~~eA~~~~~~al~~~p 232 (788)
. ..+...+.++...++++.|...++++++.+|.... ....+...+.. .+.+++|+..|.++.+++|
T Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred hhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 3 35678899999999999999999999999876433 33445445444 3457888888877666554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.55 E-value=6.9e-13 Score=137.76 Aligned_cols=224 Identities=9% Similarity=0.027 Sum_probs=127.5
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCC
Q 003891 2 LVASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG-------NTQDGIQKYYEALKI-DPHYAPAYYNLGVVYSELMQ 73 (788)
Q Consensus 2 Ai~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g-------~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~ 73 (788)
+...|++||...|.+++.|...+..+..-+......+ ..++|...|+++++. .|.+...|...+..+...|+
T Consensus 35 v~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~ 114 (308)
T d2onda1 35 VMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK 114 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccc
Confidence 3457999999999999998887776665555544433 345666677777653 56666677777777777777
Q ss_pred HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHH
Q 003891 74 YDTALGCYEKAALERPMY-AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQG 152 (788)
Q Consensus 74 ~~~A~~~~~kal~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A 152 (788)
+++|...|+++++..|.+ ..+|..++......|++++|.+.|+++++..|.....+...+.... ...|+.+.|
T Consensus 115 ~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~------~~~~~~~~a 188 (308)
T d2onda1 115 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY------YCSKDKSVA 188 (308)
T ss_dssp HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHH------HTSCCHHHH
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH------HhccCHHHH
Confidence 777777777777766654 3356666666666666666666666666666665544333222111 112445555
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 153 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAVECYQMAL 228 (788)
Q Consensus 153 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~~~~~~al 228 (788)
...|+++++..|++...+...+..+...|++++|..+|+++++..|.+ ...|......-...|+.+.+.++++++.
T Consensus 189 ~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555544443321 2233333333333344444444444444
Q ss_pred hhC
Q 003891 229 SIK 231 (788)
Q Consensus 229 ~~~ 231 (788)
+..
T Consensus 269 ~~~ 271 (308)
T d2onda1 269 TAF 271 (308)
T ss_dssp HHT
T ss_pred HHC
Confidence 333
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.55 E-value=5.6e-13 Score=138.46 Aligned_cols=193 Identities=7% Similarity=-0.014 Sum_probs=164.2
Q ss_pred CCHHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCh
Q 003891 106 GDLESAIACYERCLAV-SPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYA-DAMYNLGVAYGEMLKF 183 (788)
Q Consensus 106 g~~~~A~~~~~~al~~-~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~ 183 (788)
+..++|...|+++++. .|.+...+..++ ..+...|++++|...|+++++..|.+. .++..++......|++
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya-------~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~ 150 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYA-------DYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI 150 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHH-------HHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHH-------HHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCh
Confidence 3457889999999975 666665444444 344557799999999999999988764 4788999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 184 DMAIVFYELAFHFNPHCAEACNNLGVIYK-DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 262 (788)
Q Consensus 184 ~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal 262 (788)
+.|.+.|+++++..|.+...+...+.... ..|+.+.|..+|+++++.+|+++..+..++..+...|++++|..+|++++
T Consensus 151 ~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai 230 (308)
T d2onda1 151 KSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 230 (308)
T ss_dssp HHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 99999999999999999999998887754 46899999999999999999999999999999999999999999999999
Q ss_pred HhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhh
Q 003891 263 AANPTY----AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 305 (788)
Q Consensus 263 ~~~p~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a 305 (788)
...|.+ ..+|..........|+.+.+.+.++++.++.|+....
T Consensus 231 ~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~ 277 (308)
T d2onda1 231 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp HSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred HhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccccc
Confidence 987644 4578888888888999999999999999999887554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=8.1e-14 Score=122.37 Aligned_cols=110 Identities=25% Similarity=0.310 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 105 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~ 105 (788)
-+...|..++..|++++|+.+|+++++.+|+++.+|.++|.+|..+|++++|+..++++++++|+++.+|+++|.++..+
T Consensus 5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~ 84 (117)
T d1elwa_ 5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 84 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHc
Confidence 36778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 003891 106 GDLESAIACYERCLAVSPNFEIAKNNMAIA 135 (788)
Q Consensus 106 g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 135 (788)
|++++|+..|+++++++|+++..+..++.+
T Consensus 85 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 85 NRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999998777665543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=2.5e-13 Score=130.59 Aligned_cols=131 Identities=16% Similarity=0.275 Sum_probs=107.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 003891 171 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 250 (788)
Q Consensus 171 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 250 (788)
++.|..+...|++++|++.|.++ .+.++.+++++|.+|..+|++++|+.+|+++++++|+++.++.++|.++.++|+
T Consensus 9 ~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 9 WNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcc
Confidence 35577788888888888888753 455677888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 003891 251 MDAAAEMIEKAIAANPTY----------------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304 (788)
Q Consensus 251 ~~eA~~~l~kal~~~p~~----------------~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 304 (788)
+++|++.|++++...+.+ .++++++|.++..+|++++|++.+++++++.|+...
T Consensus 86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~ 155 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 155 (192)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcch
Confidence 888888888888764432 477889999999999999999999999999987543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.6e-13 Score=127.70 Aligned_cols=116 Identities=22% Similarity=0.222 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003891 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 101 (788)
Q Consensus 22 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~ 101 (788)
..|..+...|..++..|+|++|+.+|+++++.+|++..+|+++|.++..+|++++|+..|+++++++|++..++..+|.+
T Consensus 8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~ 87 (159)
T d1a17a_ 8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 87 (159)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 003891 102 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 137 (788)
Q Consensus 102 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 137 (788)
+..+|++++|+..+++++.+.|++......+..+..
T Consensus 88 ~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~ 123 (159)
T d1a17a_ 88 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 123 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999877766555443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=8.8e-14 Score=122.14 Aligned_cols=102 Identities=21% Similarity=0.311 Sum_probs=50.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 003891 206 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 285 (788)
Q Consensus 206 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~ 285 (788)
..|..+...|++++|+.+|+++++.+|+++.++.++|.+|..+|++++|+..++++++++|+++.+|+++|.++..+|++
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 34444444444444444444444444544444445555555555555555555555555555544555555555555555
Q ss_pred HHHHHHHHHHHhhCCCChhhHH
Q 003891 286 SLAIDAYEQCLKIDPDSRNAGQ 307 (788)
Q Consensus 286 ~eA~~~~~~al~l~p~~~~a~~ 307 (788)
++|+..|+++++++|+++.+..
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~ 109 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKE 109 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHH
Confidence 5555555555555554444433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2e-13 Score=131.18 Aligned_cols=151 Identities=17% Similarity=0.175 Sum_probs=130.8
Q ss_pred HHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 003891 136 LTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 215 (788)
Q Consensus 136 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 215 (788)
+...|..+...|++++|++.|.+ +.+.++.+++++|.+|..+|++++|++.|+++++++|+++.+++++|.++.++|
T Consensus 8 l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g 84 (192)
T d1hh8a_ 8 LWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 84 (192)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhc
Confidence 44567777889999999999986 456788999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003891 216 NLDKAVECYQMALSIKPNF----------------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 279 (788)
Q Consensus 216 ~~~eA~~~~~~al~~~p~~----------------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~ 279 (788)
++++|+..|++++...+.+ .++++++|.++..+|++++|++.+++++++.|+.
T Consensus 85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~----------- 153 (192)
T d1hh8a_ 85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP----------- 153 (192)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG-----------
T ss_pred cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-----------
Confidence 9999999999999865432 4688999999999999999999999999998874
Q ss_pred HHcCCHHHHHHHHHHHHhhCCC
Q 003891 280 RDAGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 280 ~~~g~~~eA~~~~~~al~l~p~ 301 (788)
..+..+.|+..+.+.....|.
T Consensus 154 -~~~~~~~Al~~~~~~~~~~~~ 174 (192)
T d1hh8a_ 154 -RHSKIDKAMECVWKQKLYEPV 174 (192)
T ss_dssp -GGGHHHHHHHHHHTTCCCCCC
T ss_pred -chHHHHHHHHHHHhhhhCCcc
Confidence 233456777777776666664
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=3e-13 Score=125.83 Aligned_cols=110 Identities=18% Similarity=0.197 Sum_probs=80.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 003891 170 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 249 (788)
Q Consensus 170 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g 249 (788)
+...|..++..|+|++|+..|+++++.+|++..+|.++|.++...|++++|+..|+++++++|++..++..+|.++..+|
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 44556777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003891 250 KMDAAAEMIEKAIAANPTYAEAYNNLGVLY 279 (788)
Q Consensus 250 ~~~eA~~~l~kal~~~p~~~~~~~~la~~~ 279 (788)
++++|+..+++++.++|+++.++..++.+.
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~ 122 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQECN 122 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 777777777777777777777766666554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.41 E-value=3.8e-13 Score=129.90 Aligned_cols=102 Identities=20% Similarity=0.188 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 25 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 104 (788)
Q Consensus 25 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~ 104 (788)
..+...|..++..|+|++|+..|+++++.+|+++.+|.++|.+|...|++++|+..|+++++++|++..+|+++|.+|..
T Consensus 5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~ 84 (201)
T d2c2la1 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 84 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCCCcH
Q 003891 105 RGDLESAIACYERCLAVSPNFE 126 (788)
Q Consensus 105 ~g~~~~A~~~~~~al~~~p~~~ 126 (788)
+|++++|+..|+++++++|++.
T Consensus 85 l~~~~~A~~~~~~al~l~p~~~ 106 (201)
T d2c2la1 85 MESYDEAIANLQRAYSLAKEQR 106 (201)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCcccH
Confidence 9999999999999999887543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.41 E-value=6.4e-11 Score=119.49 Aligned_cols=230 Identities=21% Similarity=0.295 Sum_probs=145.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 003891 57 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEIAKNNM 132 (788)
Q Consensus 57 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l 132 (788)
++.+++.+|..+...+++++|+++|+++.+. .+..+++.||.+|.. ..++..|..+++++.... ++.+...+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l 76 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLL 76 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhcc
Confidence 3556666666666666666677666666553 356666666666665 456666666666665443 33333333
Q ss_pred HHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 003891 133 AIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHCAEACNNLG 208 (788)
Q Consensus 133 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la 208 (788)
+..+... .....+.++|...++++.+.. ...+...++..+.. ......|...+.+... +.+...+..+|
T Consensus 77 ~~~~~~~---~~~~~~~~~a~~~~~~a~~~g--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~ 149 (265)
T d1ouva_ 77 GNLYYSG---QGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILG 149 (265)
T ss_dssp HHHHHHT---SSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHH
T ss_pred ccccccc---cccchhhHHHHHHHhhhhhhh--hhhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhh
Confidence 3333221 112446666777777666543 34445555555543 3345556666655543 34566677777
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 209 VIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 280 (788)
Q Consensus 209 ~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~ 280 (788)
.++.. ..+...+..+++++.+ ..++.+.+++|.+|.. ..++++|+.+|+++.+. .++.+.++||.+|.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~ 225 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQY 225 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred hhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHH
Confidence 77775 3456677777777664 4567788888888776 56788888888888776 35778888888887
Q ss_pred H----cCCHHHHHHHHHHHHhhCCC
Q 003891 281 D----AGSISLAIDAYEQCLKIDPD 301 (788)
Q Consensus 281 ~----~g~~~eA~~~~~~al~l~p~ 301 (788)
. .+++++|.++|+++.+....
T Consensus 226 ~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 226 NGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred cCCCCccCHHHHHHHHHHHHHCcCH
Confidence 5 34788888888888777543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.40 E-value=1.4e-10 Score=116.86 Aligned_cols=227 Identities=20% Similarity=0.265 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 003891 26 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVI 101 (788)
Q Consensus 26 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~kal~~~p~~~~~~~~la~~ 101 (788)
.++.+|..++..+++++|+++|+++.+. ++..+++.||.+|.. ..++..|..+++++.... ++.+...+|.+
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~~~ 79 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNL 79 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhccccc
Confidence 4888899999999999999999999765 588999999999998 779999999999987654 67888899988
Q ss_pred HHH----CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003891 102 YKN----RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY 177 (788)
Q Consensus 102 ~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 177 (788)
+.. ..+.+.|...++++.+..+. .....++..+.. ..........+...+.+... +.+...+..+|..+
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~a~~~g~~--~a~~~l~~~~~~---~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~ 152 (265)
T d1ouva_ 80 YYSGQGVSQNTNKALQYYSKACDLKYA--EGCASLGGIYHD---GKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLY 152 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHH---CSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred cccccccchhhHHHHHHHhhhhhhhhh--hHHHhhcccccC---CCcccchhHHHHHHhhhhhc--ccccchhhhhhhhh
Confidence 876 56899999999999887554 333334333322 11235678888888887765 46678899999999
Q ss_pred HH----cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--
Q 003891 178 GE----MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV-- 247 (788)
Q Consensus 178 ~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~-- 247 (788)
.. ..+...+...++.+.+ ..+..+.+++|.+|.. ..++++|+.+|+++.+. .++.++++||.+|..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~ 228 (265)
T d1ouva_ 153 DAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGE 228 (265)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTS
T ss_pred ccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCC
Confidence 86 4567788888888775 4578999999999987 67999999999999887 568999999999986
Q ss_pred --cCCHHHHHHHHHHHHHhCCC
Q 003891 248 --QGKMDAAAEMIEKAIAANPT 267 (788)
Q Consensus 248 --~g~~~eA~~~l~kal~~~p~ 267 (788)
..++++|+++|+++......
T Consensus 229 g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 229 GVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp SSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCccCHHHHHHHHHHHHHCcCH
Confidence 45899999999999888654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.40 E-value=3.7e-13 Score=130.01 Aligned_cols=100 Identities=18% Similarity=0.122 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003891 168 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 247 (788)
Q Consensus 168 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 247 (788)
..+...|..++..|+|++|+..|+++++.+|.++.+|.++|.+|...|++++|+.+|+++++++|++..+++++|.+|..
T Consensus 5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~ 84 (201)
T d2c2la1 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 84 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 33445555666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHHhCCC
Q 003891 248 QGKMDAAAEMIEKAIAANPT 267 (788)
Q Consensus 248 ~g~~~eA~~~l~kal~~~p~ 267 (788)
+|++++|+..|+++++++|+
T Consensus 85 l~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 85 MESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp TTCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcc
Confidence 66666666666666555443
|
| >d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Lipopolysaccharide core biosynthesis protein RfaG species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=4.6e-13 Score=141.93 Aligned_cols=174 Identities=12% Similarity=0.083 Sum_probs=131.2
Q ss_pred CCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCc
Q 003891 520 PALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 597 (788)
Q Consensus 520 ~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~ 597 (788)
.+++.+.+++++++++ .|..+.+++++.++.+..|+..+++++++.. ...+++..++.|+. +++.|+|...
T Consensus 189 ~~~~~~~~~i~~~gr~~~~Kg~~~li~a~~~l~~~~~~~~~~ii~g~~~----~~~~~~~~~~~~~~-~~v~~~g~~~-- 261 (370)
T d2iw1a1 189 NGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDK----PRKFEALAEKLGVR-SNVHFFSGRN-- 261 (370)
T ss_dssp TTCCTTCEEEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSC----CHHHHHHHHHHTCG-GGEEEESCCS--
T ss_pred cCCCccceEEEEEeccccccchhhhcccccccccccccceeeecccccc----cccccccccccccc-cccccccccc--
Confidence 4667788888888876 8999999999999999999999888765522 24567778888997 8999998754
Q ss_pred HHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc--CCHHHHHHHHHHHhc
Q 003891 598 HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLAS 674 (788)
Q Consensus 598 ~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia--~~~~~y~~~a~~l~~ 674 (788)
+....|+.+|+++-|+.+ +.+.+.+|||++|+|||+-....+. .++..-+..-++. .|.+++++...+|.+
T Consensus 262 -~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PvI~s~~~g~~-----e~i~~~~~G~l~~~~~d~~~la~~i~~ll~ 335 (370)
T d2iw1a1 262 -DVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYA-----HYIADANCGTVIAEPFSQEQLNEVLRKALT 335 (370)
T ss_dssp -CHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEEETTSTTT-----HHHHHHTCEEEECSSCCHHHHHHHHHHHHH
T ss_pred -ccccccccccccccccccccccceeeecccCCeeEEEeCCCChH-----HHhcCCCceEEEcCCCCHHHHHHHHHHHHc
Confidence 566778889999999876 7799999999999999984322221 1222212222454 589999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 003891 675 DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 709 (788)
Q Consensus 675 d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 709 (788)
|++++++|+++.|+...+...+ .+.+.+++.|
T Consensus 336 d~~~~~~~~~~ar~~~~~~~~~---~~~~~~~~ii 367 (370)
T d2iw1a1 336 QSPLRMAWAENARHYADTQDLY---SLPEKAADII 367 (370)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCS---CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhChh---HHHHHHHHHH
Confidence 9999999999999876553334 4455555554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.3e-11 Score=115.82 Aligned_cols=138 Identities=17% Similarity=0.111 Sum_probs=85.8
Q ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 003891 132 MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY 211 (788)
Q Consensus 132 la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 211 (788)
.+..+...|..+...|++++|+..|++++...|........ .......+ ...++.++|.+|
T Consensus 12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~----------~~~~~~~~---------~~~~~~nla~~y 72 (170)
T d1p5qa1 12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE----------EAQKAQAL---------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSH----------HHHHHHHH---------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchH----------HHhhhchh---------HHHHHHHHHHHH
Confidence 34555556666666666666666666666554432110000 00000000 123566677777
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003891 212 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 288 (788)
Q Consensus 212 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA 288 (788)
.++|++++|+.++++++.++|+++.+++.+|.+|..+|++++|+..|+++++++|+++.+...++.+....++..+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777776665554443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=3.6e-11 Score=112.69 Aligned_cols=120 Identities=18% Similarity=0.186 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 21 ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---------------APAYYNLGVVYSELMQYDTALGCYEKAA 85 (788)
Q Consensus 21 ~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~kal 85 (788)
...+..+...|..++..|+|++|+..|++++...|.. ..++.++|.+|.++|++++|+..+++++
T Consensus 10 ~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al 89 (170)
T d1p5qa1 10 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 89 (170)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhh
Confidence 3457778899999999999999999999999987653 3567889999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 003891 86 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 140 (788)
Q Consensus 86 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg 140 (788)
+++|+++.+++.+|.+|..+|++++|+..|+++++++|++..+...++.+...+.
T Consensus 90 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 144 (170)
T d1p5qa1 90 ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR 144 (170)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred hccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988777766655543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=5.2e-12 Score=112.49 Aligned_cols=113 Identities=21% Similarity=0.266 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 003891 59 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 138 (788)
Q Consensus 59 ~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~ 138 (788)
..+..+|..++..|+|++|+.+|+++++++|++..++.++|.+|..+|++++|+..++++++++|++...+..++.++..
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999888888899999999
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 003891 139 LGTKVKLEGDINQGVAYYKKALYYNWHYADAMYN 172 (788)
Q Consensus 139 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 172 (788)
+|.++...+++++|+.+|++++..+++ ++....
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~ 117 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKK 117 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHH
Confidence 999999999999999999999988764 444433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.33 E-value=9.2e-12 Score=116.77 Aligned_cols=142 Identities=16% Similarity=0.107 Sum_probs=97.0
Q ss_pred HHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 003891 129 KNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 208 (788)
Q Consensus 129 ~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 208 (788)
....+..+...|..+...|++++|+..|+++++..+. ..+.....+....+|....++.++|
T Consensus 23 ~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~nla 84 (169)
T d1ihga1 23 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG------------------SRAAAEDADGAKLQPVALSCVLNIG 84 (169)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HHHHSCHHHHGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh------------------hhhhhhhHHHHHhChhhHHHHHHHH
Confidence 3344445555666666677777777777777653211 1111112223344555667777888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003891 209 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 288 (788)
Q Consensus 209 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA 288 (788)
.++.++|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..+...++.++.......++
T Consensus 85 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 85 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888777777777665555443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.32 E-value=6.3e-12 Score=109.03 Aligned_cols=93 Identities=16% Similarity=0.155 Sum_probs=64.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 003891 204 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 283 (788)
Q Consensus 204 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g 283 (788)
.+.+|..+.+.|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|++..+++.+|.+|..+|
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 45566666666677777777777766667666677777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHH
Q 003891 284 SISLAIDAYEQCL 296 (788)
Q Consensus 284 ~~~eA~~~~~~al 296 (788)
++++|++.+++.+
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 7777776666654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.32 E-value=5.7e-12 Score=109.30 Aligned_cols=93 Identities=17% Similarity=0.186 Sum_probs=90.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 003891 27 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 106 (788)
Q Consensus 27 l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g 106 (788)
.+.+|..+...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+.+|+++++++|++..++..+|.+|...|
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH
Q 003891 107 DLESAIACYERCL 119 (788)
Q Consensus 107 ~~~~A~~~~~~al 119 (788)
++++|++.+++.+
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999976
|
| >d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.32 E-value=4.2e-12 Score=140.34 Aligned_cols=164 Identities=15% Similarity=0.033 Sum_probs=124.1
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 003891 523 TNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 600 (788)
Q Consensus 523 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~ 600 (788)
.++.++|++++|+ .|..+.+++++.++++. +.+|+++|.| .......+++.... .. ++|.|.+... .++.
T Consensus 288 ~~~~~~i~~vgrl~~~KG~~~Ll~a~~~~~~~--~~~l~~~G~G--~~~~~~~~~~~~~~--~~-~~v~~~~~~~-~~~~ 359 (477)
T d1rzua_ 288 DDGSPLFCVISRLTWQKGIDLMAEAVDEIVSL--GGRLVVLGAG--DVALEGALLAAASR--HH-GRVGVAIGYN-EPLS 359 (477)
T ss_dssp CSSSCEEEEESCBSTTTTHHHHHTTHHHHHHT--TCEEEEEECB--CHHHHHHHHHHHHH--TT-TTEEEEESCC-HHHH
T ss_pred cCCccEEEEEeeeeecCCcHHHHHHHHHHHhh--CCeEEEEecC--CchHHHHHHHHHhh--cC-CeEEEEcccC-hhHH
Confidence 3456678888866 99999999999999875 5788888766 23344444444333 44 7899988775 4566
Q ss_pred HHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc-------------------C
Q 003891 601 MQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA-------------------K 660 (788)
Q Consensus 601 ~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia-------------------~ 660 (788)
...|+.+|+++-|+-+ +.|++.+|||++|+|||+ +++| |++|+|. .
T Consensus 360 ~~~~~~aD~~v~PS~~E~fglv~lEAma~G~PvVa-------s~~G-------G~~E~v~d~~~~~~~~~~~~G~l~~~~ 425 (477)
T d1rzua_ 360 HLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVV-------ARTG-------GLADTVIDANHAALASKAATGVQFSPV 425 (477)
T ss_dssp HHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEE-------ESSH-------HHHHHCCBCCHHHHHTTCCCBEEESSC
T ss_pred HHHHHhCccccCCccccCCCHHHHHHHHcCCCEEE-------cCCC-------CCcceeecCCccccccCCCceEEeCCC
Confidence 6678999999999988 789999999999999997 7777 5555442 3
Q ss_pred CHHHHHHHHHH---HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 003891 661 NEDEYVQLALQ---LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 713 (788)
Q Consensus 661 ~~~~y~~~a~~---l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 713 (788)
|.+++.+...+ +.+|++++++|+++.. . ..|+++..++++|++|+++.
T Consensus 426 d~~~la~ai~~~l~~~~~~~~~~~~~~~a~---~--~~fsw~~~a~~~~~lY~~ll 476 (477)
T d1rzua_ 426 TLDGLKQAIRRTVRYYHDPKLWTQMQKLGM---K--SDVSWEKSAGLYAALYSQLI 476 (477)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHHHHH---T--CCCBHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhhCCHHHHHHHHHHHH---H--hhCCHHHHHHHHHHHHHHHh
Confidence 77888776644 4469988888876543 2 35999999999999999874
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.31 E-value=2e-11 Score=114.45 Aligned_cols=126 Identities=13% Similarity=0.177 Sum_probs=111.4
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHH
Q 003891 14 PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI----------------DPHYAPAYYNLGVVYSELMQYDTA 77 (788)
Q Consensus 14 P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A 77 (788)
..+.+.+...+..+...|..++..|+|++|+..|.++++. +|....++.++|.++.++|++++|
T Consensus 17 l~~~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A 96 (169)
T d1ihga1 17 LKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGA 96 (169)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchh
Confidence 3445566677788889999999999999999999999864 345677889999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 003891 78 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 139 (788)
Q Consensus 78 ~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l 139 (788)
+..++++++++|+++.+|+.+|.+|..+|++++|+..|+++++++|++..+...+..+...+
T Consensus 97 i~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l 158 (169)
T d1ihga1 97 VDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 158 (169)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988777766655444
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.30 E-value=4.7e-11 Score=109.76 Aligned_cols=119 Identities=22% Similarity=0.222 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 21 ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY----------------APAYYNLGVVYSELMQYDTALGCYEKA 84 (788)
Q Consensus 21 ~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------------~~~~~~lg~~~~~~g~~~~A~~~~~ka 84 (788)
...+..+...|..++..|+|.+|+..|++++...+.. ..++.++|.+|..+|++++|+..++++
T Consensus 14 ~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~a 93 (153)
T d2fbna1 14 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 93 (153)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcc
Confidence 4556678889999999999999999999999875532 246789999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 003891 85 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 139 (788)
Q Consensus 85 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~l 139 (788)
++++|.+..+|+.+|.++..+|++++|+..|+++++++|++..+...+..+...+
T Consensus 94 l~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl 148 (153)
T d2fbna1 94 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 148 (153)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998877766655443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.29 E-value=5.4e-11 Score=111.26 Aligned_cols=96 Identities=22% Similarity=0.259 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 201 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 280 (788)
Q Consensus 201 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~ 280 (788)
..++.++|.+|..+|++++|+.+++++++++|++..+++.+|.++..+|++++|+..|+++++++|++..+...++.+..
T Consensus 64 ~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 64 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34567788888888888888888888888888888888888888888888888888888888888888888877777776
Q ss_pred HcCCHHH-HHHHHHHHH
Q 003891 281 DAGSISL-AIDAYEQCL 296 (788)
Q Consensus 281 ~~g~~~e-A~~~~~~al 296 (788)
..+.+.+ ..+.|.+.+
T Consensus 144 ~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 144 KAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 6654433 334444333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.28 E-value=3.1e-11 Score=110.94 Aligned_cols=78 Identities=26% Similarity=0.313 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003891 203 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 280 (788)
Q Consensus 203 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~ 280 (788)
++.++|.+|.++|++++|+.+++++++++|.+..+++.+|.++..+|++++|+..|+++++++|++..+...+..+..
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555555555555555555555555555555555555544443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.27 E-value=1.2e-10 Score=108.77 Aligned_cols=119 Identities=20% Similarity=0.251 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003891 22 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---------------APAYYNLGVVYSELMQYDTALGCYEKAAL 86 (788)
Q Consensus 22 ~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~kal~ 86 (788)
..+..+...|..++..|+|.+|+..|.+++...+.. ..++.++|.+|..+|++++|+..++++++
T Consensus 13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~ 92 (168)
T d1kt1a1 13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 92 (168)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence 456778999999999999999999999999864331 34678899999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 003891 87 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 140 (788)
Q Consensus 87 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg 140 (788)
++|.+..+++.+|.++..+|++++|+..|+++++++|++..+...+..+...+.
T Consensus 93 l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 93 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987777666655543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1.3e-11 Score=108.51 Aligned_cols=102 Identities=7% Similarity=-0.067 Sum_probs=42.8
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcC
Q 003891 175 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVECYQMALSIKPNF--SQSLNNLGVVYTVQG 249 (788)
Q Consensus 175 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~p~~--~~~~~~la~~~~~~g 249 (788)
..+...+++++|++.|++++..+|.++.+++++|.++.+.+ ++++|+..|++++..+|.. ..+++++|.+|...|
T Consensus 7 n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g 86 (122)
T d1nzna_ 7 NELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK 86 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444444444444444443322 2223444444444433322 223444444444444
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003891 250 KMDAAAEMIEKAIAANPTYAEAYNNLG 276 (788)
Q Consensus 250 ~~~eA~~~l~kal~~~p~~~~~~~~la 276 (788)
++++|+++|+++++++|++..+...++
T Consensus 87 ~~~~A~~~~~~aL~~~P~~~~A~~l~~ 113 (122)
T d1nzna_ 87 EYEKALKYVRGLLQTEPQNNQAKELER 113 (122)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 444444444444444444444443333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=1.4e-11 Score=108.28 Aligned_cols=110 Identities=9% Similarity=-0.022 Sum_probs=95.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH
Q 003891 29 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM---QYDTALGCYEKAALERPMY--AEAYCNMGVIYK 103 (788)
Q Consensus 29 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~kal~~~p~~--~~~~~~la~~~~ 103 (788)
.++..+...+++++|++.|+++++.+|.++.+++++|.++...+ ++++|+..|++++..+|.. ..+++++|.+|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 45566778899999999999999999999999999999998754 5567999999999988765 458999999999
Q ss_pred HCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 003891 104 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 138 (788)
Q Consensus 104 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~ 138 (788)
..|++++|+++|+++++++|++..+......+...
T Consensus 84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~ 118 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA 118 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999998877665544433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.23 E-value=1.4e-11 Score=112.22 Aligned_cols=118 Identities=18% Similarity=0.176 Sum_probs=75.1
Q ss_pred hhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 003891 141 TKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 220 (788)
Q Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA 220 (788)
..+.+.+.+++|+..|+++++++|+++++++++|.++...+++..+.+. .+.+++|
T Consensus 5 ~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~------------------------~~~~~~A 60 (145)
T d1zu2a1 5 TEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDA------------------------KQMIQEA 60 (145)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHH------------------------HHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHH------------------------HHHHHHH
Confidence 3455566677777777777777777777777777777655444333221 1234556
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 003891 221 VECYQMALSIKPNFSQSLNNLGVVYTVQG-----------KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 282 (788)
Q Consensus 221 ~~~~~~al~~~p~~~~~~~~la~~~~~~g-----------~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~ 282 (788)
+..|+++++++|+++.+++++|.+|..+| ++++|+++|+++++++|++..++..|+.+....
T Consensus 61 i~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~ 133 (145)
T d1zu2a1 61 ITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP 133 (145)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHH
Confidence 66666666666666666666666665543 357777777777777777777777777665433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=4.9e-11 Score=105.98 Aligned_cols=102 Identities=24% Similarity=0.278 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHH
Q 003891 24 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA-------EAYC 96 (788)
Q Consensus 24 a~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~-------~~~~ 96 (788)
|..+..+|..++..|+|++|+.+|+++++++|++..++.++|.+|..+|++++|+..++++++++|.+. .++.
T Consensus 4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 455788999999999999999999999999999999999999999999999999999999999887653 5778
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Q 003891 97 NMGVIYKNRGDLESAIACYERCLAVSPNF 125 (788)
Q Consensus 97 ~la~~~~~~g~~~~A~~~~~~al~~~p~~ 125 (788)
.+|.++...+++++|+++|++++..++..
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 112 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Confidence 88999999999999999999999988763
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.20 E-value=1.8e-11 Score=111.40 Aligned_cols=116 Identities=19% Similarity=0.213 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003891 110 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEG----------DINQGVAYYKKALYYNWHYADAMYNLGVAYGE 179 (788)
Q Consensus 110 ~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 179 (788)
+-+..|++|++....-....-+-+.++..+|.++...+ .+++|+..|+++++++|++..+++++|.+|..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 44667888877654433333334677788887776443 34555555555555555555555555555544
Q ss_pred cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 003891 180 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 248 (788)
Q Consensus 180 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~ 248 (788)
+|++.. . .....+++++|+++|+++++++|++..++..++.+....
T Consensus 88 ~g~~~~-------------~----------~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~ 133 (145)
T d1zu2a1 88 FAFLTP-------------D----------ETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP 133 (145)
T ss_dssp HHHHCC-------------C----------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred cccchh-------------h----------HHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHH
Confidence 432100 0 000112367788888888888888888777777765433
|
| >d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.19 E-value=1.9e-11 Score=132.83 Aligned_cols=171 Identities=14% Similarity=0.127 Sum_probs=126.5
Q ss_pred eEEEecCCC---CcCCHHHHHHHHHHHh--HcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 003891 527 ITFGSFNNL---AKITPKVLQVWARILC--AVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 601 (788)
Q Consensus 527 ~~f~~~~~~---~K~~~~~~~~~~~il~--~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~ 601 (788)
+++..++++ .|..+.++++|..+.. ..|+.+|+++|.+. +......+.+.+ ... +.+.|.+..+ .++..
T Consensus 250 ~~i~~~G~~~~~~Kg~~~ll~a~~~~~~~~~~~~~~lvi~G~~~---~~~~~~~~~~~~-~~~-~~~~~~~~~~-~~~~~ 323 (437)
T d2bisa1 250 VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGD---PELEGWARSLEE-KHG-NVKVITEMLS-REFVR 323 (437)
T ss_dssp EEEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBC---HHHHHHHHHHHH-TCT-TEEEECSCCC-HHHHH
T ss_pred ceEEEeecccccchhHHHHHhhhcccccccccccceeeeecccc---cccccchhhhcc-ccc-cceeccccCc-HHHHH
Confidence 455666654 6899999999998854 46899999998762 222333333333 333 6777777766 67888
Q ss_pred HhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchh--HHHhhhCCcccc--cCCHHHHHHHHHHHhc-C
Q 003891 602 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLI--AKNEDEYVQLALQLAS-D 675 (788)
Q Consensus 602 ~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~--~~l~~~gl~~~i--a~~~~~y~~~a~~l~~-d 675 (788)
..++.+|+++-|+.+ +.+++.+|||++|+|||+ +++|+ .++. +-.+++ ..|.+++.+...++.. |
T Consensus 324 ~~~~~adi~v~~s~~e~~~~~~~Eama~G~Pvi~-------~~~g~~~e~i~--~~~G~~~~~~d~~~la~~i~~ll~~~ 394 (437)
T d2bisa1 324 ELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIA-------SAVGGLRDIIT--NETGILVKAGDPGELANAILKALELS 394 (437)
T ss_dssp HHHTTCSEEEECCSCCSSCHHHHHHHTTTCEEEE-------ESCTTHHHHCC--TTTCEEECTTCHHHHHHHHHHHHTTT
T ss_pred HHHhhhccccccccccccchHHHHHHHCCCCEEE-------eCCCCcHHhEE--CCcEEEECCCCHHHHHHHHHHHHhCC
Confidence 899999999999876 779999999999999997 44432 1111 112333 3589999999988775 7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 003891 676 VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 715 (788)
Q Consensus 676 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 715 (788)
++.+++++++.++... . |+++.++++++++|+++.+|
T Consensus 395 ~~~~~~~~~~~~~~~~-~--~s~~~~a~~~~~iY~~~i~r 431 (437)
T d2bisa1 395 RSDLSKFRENCKKRAM-S--FSWEKSAERYVKAYTGSIDR 431 (437)
T ss_dssp TSCTHHHHHHHHHHHH-H--SCHHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHHH-h--CCHHHHHHHHHHHHHHHHHh
Confidence 8899999999988753 2 89999999999999987654
|
| >d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.02 E-value=6.4e-10 Score=106.61 Aligned_cols=157 Identities=13% Similarity=0.111 Sum_probs=109.6
Q ss_pred CCCCCCCeEEEecCC---CCcCCHHHHHHHHHHHh--HcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCc
Q 003891 520 PALTNGFITFGSFNN---LAKITPKVLQVWARILC--AVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLI 594 (788)
Q Consensus 520 ~~~~~~~~~f~~~~~---~~K~~~~~~~~~~~il~--~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~ 594 (788)
.+++++. +|..++| +.|..+.+++++..+.. ..|+.+|+++|.+ . +..+...+.+... .. +.+.+.+.+
T Consensus 27 ~~l~~~~-~il~~Grl~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g--~-~~~~~~~~~~~~~-~~-~~~~~~~~~ 100 (196)
T d2bfwa1 27 FGMDEGV-TFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKG--D-PELEGWARSLEEK-HG-NVKVITEML 100 (196)
T ss_dssp TTCCSCE-EEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCB--C-HHHHHHHHHHHHH-CT-TEEEECSCC
T ss_pred hCCCCCC-EEEEEcCCCccccCHHHHHHHHHhhhcccCCCCeEEEEEeec--c-cchhhhhhhhhhc-cc-eeEEeeecc
Confidence 3554443 3555554 46899999999999864 4689999999875 2 2333333333332 22 556677776
Q ss_pred CCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHHHhhh-CCcccc--cCCHHHHHHHHH
Q 003891 595 LLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV-GLKHLI--AKNEDEYVQLAL 670 (788)
Q Consensus 595 ~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~-gl~~~i--a~~~~~y~~~a~ 670 (788)
+ .++....|+.+|+++-|+.+ +.+++.+|||++|+|||+ +.++. +-.-+ +-..++ ..|.+++++...
T Consensus 101 ~-~~~l~~~~~~~di~v~ps~~e~~~~~~~Eam~~G~pvI~-------~~~~~-~~e~i~~~~g~~~~~~~~~~l~~~i~ 171 (196)
T d2bfwa1 101 S-REFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIA-------SAVGG-LRDIITNETGILVKAGDPGELANAIL 171 (196)
T ss_dssp C-HHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEE-------ESCHH-HHHHCCTTTCEEECTTCHHHHHHHHH
T ss_pred c-cccchhccccccccccccccccccccchhhhhcCceeee-------cCCCc-cceeecCCceeeECCCCHHHHHHHHH
Confidence 5 67888999999999999977 669999999999999998 44442 11111 112233 358899999888
Q ss_pred HHhc-CHHHHHHHHHHHHHHhh
Q 003891 671 QLAS-DVTALANLRMSLRDLMS 691 (788)
Q Consensus 671 ~l~~-d~~~~~~~r~~~~~~~~ 691 (788)
++.. |++.+.++++..|++..
T Consensus 172 ~~l~~~~~~~~~~~~~a~~~a~ 193 (196)
T d2bfwa1 172 KALELSRSDLSKFRENCKKRAM 193 (196)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHH
Confidence 8665 89999999999887743
|
| >d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: First mannosyl transferase WbaZ species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.00 E-value=5.9e-10 Score=103.73 Aligned_cols=134 Identities=16% Similarity=0.110 Sum_probs=97.8
Q ss_pred EEecCCC--CcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhccc
Q 003891 529 FGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSL 606 (788)
Q Consensus 529 f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~ 606 (788)
|.+++++ .|..+.+++++ +.+|+.+|+++|.+...+ ....+.+.+...+. ++|+|+|.++ .++....|+.
T Consensus 15 ~l~iGrl~~~K~~~~~i~a~----~~l~~~~l~ivg~~~~~~-~~~~~~~~~~~~~~--~~v~~~g~~~-~~~~~~~~~~ 86 (166)
T d2f9fa1 15 WLSVNRIYPEKRIELQLEVF----KKLQDEKLYIVGWFSKGD-HAERYARKIMKIAP--DNVKFLGSVS-EEELIDLYSR 86 (166)
T ss_dssp EEEECCSSGGGTHHHHHHHH----HHCTTSCEEEEBCCCTTS-THHHHHHHHHHHSC--TTEEEEESCC-HHHHHHHHHH
T ss_pred EEEEecCccccCHHHHHHHH----HHhcCCeEEEEEeccccc-chhhhhhhhccccc--CcEEEeeccc-cccccccccc
Confidence 3356655 78888888765 456899999998664333 34455566665543 6899999987 6889999999
Q ss_pred ccEeecCCCC-CCchhHHHHhhhCCceeecCCCccCccchhHH-HhhhCCcccc-cCCHHHHHHHHHHHhcCHH
Q 003891 607 MDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSL-LTKVGLKHLI-AKNEDEYVQLALQLASDVT 677 (788)
Q Consensus 607 ~Dv~Ld~~~~-~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~-l~~~gl~~~i-a~~~~~y~~~a~~l~~d~~ 677 (788)
+|+++-|+.+ +.+.+.+|||++|+|||+ +..++.- +..-+-.+++ ..|.+++++....+..|++
T Consensus 87 ad~~i~ps~~e~~~~~~~Ea~~~g~pvi~-------s~~~~~~e~i~~~~~g~~~~~d~~~~~~~i~~l~~~~~ 153 (166)
T d2f9fa1 87 CKGLLCTAKDEDFGLTPIEAMASGKPVIA-------VNEGGFKETVINEKTGYLVNADVNEIIDAMKKVSKNPD 153 (166)
T ss_dssp CSEEEECCSSCCSCHHHHHHHHTTCCEEE-------ESSHHHHHHCCBTTTEEEECSCHHHHHHHHHHHHHCTT
T ss_pred cccccccccccccccccccccccccccee-------ecCCcceeeecCCcccccCCCCHHHHHHHHHHHHhCHH
Confidence 9999999977 668899999999999998 4433200 0011223343 4689999999999999975
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.94 E-value=6.2e-10 Score=102.39 Aligned_cols=103 Identities=16% Similarity=0.142 Sum_probs=87.3
Q ss_pred HHHHHHHH--HHHHHHcCChHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 003891 23 LAIVLTDL--GTSLKLAGNTQDGIQKYYEALKIDPHY------------APAYYNLGVVYSELMQYDTALGCYEKAALER 88 (788)
Q Consensus 23 la~~l~~l--g~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~ 88 (788)
.+.++..+ |..++..|+|++|+..|++++++.|+. ..+|.++|.+|..+|++++|+..+++++++.
T Consensus 6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~ 85 (156)
T d2hr2a1 6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 85 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcc
Confidence 34444444 788889999999999999999987764 4678999999999999999999999999864
Q ss_pred CC-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Q 003891 89 PM-----------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 125 (788)
Q Consensus 89 p~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 125 (788)
|. ...+++++|.+|..+|++++|+..|++++++.|+.
T Consensus 86 ~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 86 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred cccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 32 24578999999999999999999999999986543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=3.6e-09 Score=88.05 Aligned_cols=76 Identities=20% Similarity=0.181 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 003891 203 ACNNLGVIYKDRDNLDKAVECYQMALSIKPN-------FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 275 (788)
Q Consensus 203 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~l 275 (788)
.++.+|.++.+.|++++|+.+|++|+++.|. ...++.++|.++.+.|++++|+.+|+++++++|+++.++.++
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl 86 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 3445555555555555555555555544221 134455555555555555555555555555555555555555
Q ss_pred HHH
Q 003891 276 GVL 278 (788)
Q Consensus 276 a~~ 278 (788)
+.+
T Consensus 87 ~~~ 89 (95)
T d1tjca_ 87 KYF 89 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Trehalose-6-phosphate synthase, OtsA domain: Trehalose-6-phosphate synthase, OtsA species: Escherichia coli [TaxId: 562]
Probab=98.87 E-value=1.5e-08 Score=109.85 Aligned_cols=174 Identities=17% Similarity=0.125 Sum_probs=125.5
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----cEEEEecCCCCCH-H----HHH-------HHHHHHHHcCCCC
Q 003891 524 NGFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCCD-S----VRH-------RFLSTLEQLGLES 585 (788)
Q Consensus 524 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~l~~~~~~~~-~----~~~-------~l~~~~~~~gi~~ 585 (788)
.+..++.++.|+ .|..+..+++|.++|+..|+ ..|++++.|...+ . .+. ++...+...|..
T Consensus 252 ~~~~~il~V~Rld~~KGi~~~l~A~~~~l~~~p~~~~~v~lv~~~~~~~~~~~~~~~~~~ev~~lv~~in~~~~~~~~~- 330 (456)
T d1uqta_ 252 KNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWT- 330 (456)
T ss_dssp TTCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBC-
T ss_pred CCCeEEEEeCCCchhhchHHHHHHHHHHHHhCccccccEEEEEEcCCcccchHHHHHHHHHHHHHHHHHHhhhccCCCC-
Confidence 356678888887 99999999999999999987 4566666553221 1 122 222333344666
Q ss_pred CcEEEcCCcCCcHHHHHhcccccEeecCCCC-CCchhHHHHhhhCCc-----eeecCCCccCccchhHHHhhhCCcccc-
Q 003891 586 LRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP-----CVTMAGSVHAHNVGVSLLTKVGLKHLI- 658 (788)
Q Consensus 586 ~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g~~t~~eal~~GvP-----vvt~~g~~~~~r~~~~~l~~~gl~~~i- 658 (788)
+.+.+.+.++ ..+..+.|+.+|++|-|+-+ +.+.+++|||+||+| ||. |++++ +-..++ +.++
T Consensus 331 ~~v~~~~~~~-~~~l~a~~~~Adv~v~~s~~EG~~lv~~Ea~a~~~p~~~g~lIl-------S~~~G-~~~~l~-~g~lV 400 (456)
T d1uqta_ 331 PLYYLNQHFD-RKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVL-------SQFAG-AANELT-SALIV 400 (456)
T ss_dssp SEEEECSCCC-HHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEE-------ETTBG-GGGTCT-TSEEE
T ss_pred ceeeccCCcC-HHHHhHHHhhhceeecCCccCCCCcHHHHHHHhCCCCCCCcEEE-------eCCCC-CHHHhC-CeEEE
Confidence 6677777776 78999999999999999877 779999999999999 554 55551 111111 1222
Q ss_pred -cCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 003891 659 -AKNEDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 711 (788)
Q Consensus 659 -a~~~~~y~~~a~~l~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 711 (788)
..|.++.++...++.+ ++++++++.+++++++.+ +|...|++.+-+.+++
T Consensus 401 nP~d~~~~A~ai~~aL~~~~~er~~~~~~~~~~v~~---~~~~~W~~~fl~~l~~ 452 (456)
T d1uqta_ 401 NPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVK---NDINHWQECFISDLKQ 452 (456)
T ss_dssp CTTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHh
Confidence 2499999999988776 567888888889988865 5888888887777665
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.86 E-value=2.3e-09 Score=98.43 Aligned_cols=97 Identities=12% Similarity=0.110 Sum_probs=70.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------
Q 003891 208 GVIYKDRDNLDKAVECYQMALSIKPNF------------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT-------- 267 (788)
Q Consensus 208 a~~~~~~g~~~eA~~~~~~al~~~p~~------------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~-------- 267 (788)
|..++..|+|++|+..|++++++.|+. ..++.++|.+|..+|++++|+..+++++++.|.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 555666666666666666666665442 246777888888888888888888888765331
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 003891 268 ---YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 304 (788)
Q Consensus 268 ---~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~ 304 (788)
...+++++|.+|..+|++++|++.|++++++.|+...
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~ 135 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 135 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence 2346888999999999999999999999998775543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=2e-09 Score=89.65 Aligned_cols=88 Identities=22% Similarity=0.111 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003891 91 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAM 170 (788)
Q Consensus 91 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 170 (788)
.++-++.+|.++.+.|++++|+.+|++++++.|.+.......+.++..+|.++...|++++|+.+|+++++++|++..++
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence 35667899999999999999999999999887665444444566677777777777788888888888888888877777
Q ss_pred HHHHHHHH
Q 003891 171 YNLGVAYG 178 (788)
Q Consensus 171 ~~la~~~~ 178 (788)
.+++.+..
T Consensus 84 ~Nl~~~~~ 91 (95)
T d1tjca_ 84 GNLKYFEY 91 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77765543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.78 E-value=3.1e-09 Score=106.30 Aligned_cols=134 Identities=9% Similarity=-0.045 Sum_probs=109.6
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 003891 175 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 254 (788)
Q Consensus 175 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA 254 (788)
.-.+..|++++|+..++++++.+|++..++..++.+++..|++++|++.|+++++++|++...+..++.++...+..+++
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 34556788999999999999999999999999999999999999999999999999999888888888888777776666
Q ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHh
Q 003891 255 AEMIEKAIAA-NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 308 (788)
Q Consensus 255 ~~~l~kal~~-~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~ 308 (788)
...+.+.... .|.....+...+.++...|++++|.+.++++.+..|+....+..
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~ 138 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAND 138 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETT
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccccc
Confidence 5544433222 45556777888999999999999999999999999998776543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.68 E-value=1.5e-08 Score=101.25 Aligned_cols=131 Identities=10% Similarity=-0.057 Sum_probs=112.0
Q ss_pred hhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003891 142 KVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 221 (788)
Q Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 221 (788)
.....|++++|+..++++++.+|++..++..++.++...|++++|++.|+++++++|++..++..++.++...+..+++.
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999987777666655
Q ss_pred HHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 003891 222 ECYQMALSI-KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 272 (788)
Q Consensus 222 ~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~ 272 (788)
..+.+.... .|.....+...+.++...|++++|.+.++++.+..|..+..+
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 544433222 455556777889999999999999999999999999876543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.55 E-value=1.4e-07 Score=88.19 Aligned_cols=117 Identities=15% Similarity=-0.003 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 003891 168 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 247 (788)
Q Consensus 168 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~ 247 (788)
+.+...|......|++++|++.|.+++.+.+......... +. -.......+.+....++.+++.++..
T Consensus 12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~-------~~-----w~~~~r~~l~~~~~~a~~~la~~~~~ 79 (179)
T d2ff4a2 12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-------FQ-----FVEPFATALVEDKVLAHTAKAEAEIA 79 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-------ST-----THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcc-------hH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777888888888888888888766543211110 11 11112222333345678888999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003891 248 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 296 (788)
Q Consensus 248 ~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 296 (788)
.|++++|+.+++++++.+|.+..+|..++.++...|++.+|+..|+++.
T Consensus 80 ~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 80 CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999883
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.47 E-value=3e-07 Score=85.80 Aligned_cols=117 Identities=16% Similarity=-0.043 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 003891 92 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMY 171 (788)
Q Consensus 92 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 171 (788)
.+.+...|......|++++|+..|.+++.+.+...... +. .+.+ .......+.+....++.
T Consensus 11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~---------~~-----~~~w-----~~~~r~~l~~~~~~a~~ 71 (179)
T d2ff4a2 11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD---------LR-----DFQF-----VEPFATALVEDKVLAHT 71 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG---------GT-----TSTT-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccccccc---------Cc-----chHH-----HHHHHHHHHHHHHHHHH
Confidence 34566667777777777777777777777666542100 00 0000 00111111122234445
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003891 172 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMA 227 (788)
Q Consensus 172 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 227 (788)
.++.++...|++++|+..++++++.+|.+..+|..++.++...|++.+|+..|+++
T Consensus 72 ~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 72 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.98 E-value=4.8e-05 Score=66.56 Aligned_cols=80 Identities=19% Similarity=0.185 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHH
Q 003891 215 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD----AGSIS 286 (788)
Q Consensus 215 g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~kal~~~p~~~~~~~~la~~~~~----~g~~~ 286 (788)
.+.++|+++|+++.+. .++.+.+.+|.+|.. ..++++|+++|+++.+. .++.+.+.||.+|.. ..+.+
T Consensus 37 ~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~ 112 (133)
T d1klxa_ 37 INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEK 112 (133)
T ss_dssp SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred cCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHH
Confidence 3445555555555442 345555555555544 34555566666665543 345555566666554 34566
Q ss_pred HHHHHHHHHHhh
Q 003891 287 LAIDAYEQCLKI 298 (788)
Q Consensus 287 eA~~~~~~al~l 298 (788)
+|+.+|+++.++
T Consensus 113 ~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 113 QAVKTFEKACRL 124 (133)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHC
Confidence 666666665554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.93 E-value=7.4e-05 Score=65.30 Aligned_cols=112 Identities=21% Similarity=0.277 Sum_probs=94.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 003891 147 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVE 222 (788)
Q Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~ 222 (788)
.++++|+++|+++.+.. ++.+.+.++. ....+.++|+++++++.+. .++.+.+.+|.+|.. ..++++|++
T Consensus 7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~ 80 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 80 (133)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence 47899999999998875 4555666664 3557899999999999875 578999999999987 567999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Q 003891 223 CYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANP 266 (788)
Q Consensus 223 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~kal~~~p 266 (788)
+|+++.+. .++.+.+.||.+|.. ..++++|+++|+++.+...
T Consensus 81 ~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 81 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 99999875 578899999999987 5799999999999988754
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.83 E-value=5.9e-05 Score=63.77 Aligned_cols=73 Identities=12% Similarity=0.087 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHH
Q 003891 235 SQSLNNLGVVYTVQG---KMDAAAEMIEKAIAANPTYA-EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 307 (788)
Q Consensus 235 ~~~~~~la~~~~~~g---~~~eA~~~l~kal~~~p~~~-~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~ 307 (788)
.+..+++|+++.+.. +.++|+.+++++++.+|.+. +.++.||..|.++|+|++|..+++++++++|++..+..
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~ 111 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence 567778888877654 44678888888888777654 78888888888888888888888888888888877754
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.77 E-value=0.00015 Score=61.17 Aligned_cols=78 Identities=8% Similarity=-0.029 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003891 201 AEACNNLGVIYKDRD---NLDKAVECYQMALSIKPNFS-QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 276 (788)
Q Consensus 201 ~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la 276 (788)
..+.+++|+++.+.. +.++|+.+++++++.+|.+. +.++.+|..|.++|+|++|..+++++++++|++..+....-
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~ 114 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 114 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence 566777777777654 34577777777777776553 67777777777888888888888888888887776655444
Q ss_pred HH
Q 003891 277 VL 278 (788)
Q Consensus 277 ~~ 278 (788)
.+
T Consensus 115 ~I 116 (124)
T d2pqrb1 115 MV 116 (124)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: TDP-vancosaminyltransferase GftD species: Amycolatopsis orientalis [TaxId: 31958]
Probab=97.58 E-value=0.00028 Score=73.55 Aligned_cols=159 Identities=7% Similarity=-0.063 Sum_probs=98.4
Q ss_pred CCeEEEecCCCCcCCH-HHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 003891 525 GFITFGSFNNLAKITP-KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 603 (788)
Q Consensus 525 ~~~~f~~~~~~~K~~~-~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 603 (788)
..++|.+++......+ .+.+.....+...|...++..+.... ..+-.+++|.+.++++ ..+.+
T Consensus 237 ~~~v~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~v~~~~~~p-~~~ll-- 300 (401)
T d1rrva_ 237 SPPVHIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTEL-------------VLPDDRDDCFAIDEVN-FQALF-- 300 (401)
T ss_dssp SCCEEECCTTCCSHHHHHHHHHHHHHHHHTTCCEEEECTTTTC-------------CCSCCCTTEEEESSCC-HHHHG--
T ss_pred CCeEEEECCccccCCHHHHHHHHHHHHhhcCCeEEEecccccc-------------ccccCCCCEEEEeccC-cHHHh--
Confidence 3466777776654443 56667777777777766665443210 1112258999999987 55554
Q ss_pred cccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc---CCHHHHHHHHHHHhcCHHHHH
Q 003891 604 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVTALA 680 (788)
Q Consensus 604 ~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia---~~~~~y~~~a~~l~~d~~~~~ 680 (788)
..+|+|+. .+|.+|++|||++|||+|.++-. .-....+..+...|..-.+- -|+++..+...++. |++.++
T Consensus 301 -~~~~~~I~---hgG~~t~~Eal~~GvP~l~~P~~-~DQ~~na~~v~~~G~g~~l~~~~~~~~~L~~ai~~vl-~~~~r~ 374 (401)
T d1rrva_ 301 -RRVAAVIH---HGSAGTEHVATRAGVPQLVIPRN-TDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTVL-APETRA 374 (401)
T ss_dssp -GGSSEEEE---CCCHHHHHHHHHHTCCEEECCCS-BTHHHHHHHHHHHTSEEECSSSCCCHHHHHHHHHHHT-SHHHHH
T ss_pred -hhccEEEe---cCCchHHHHHHHhCCCEEEeccc-ccHHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHHh-CHHHHH
Confidence 45999982 58889999999999999998742 22334566777778764442 25777887777777 555444
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 003891 681 NLRMSLRDLMSKSPVCDGQNFALGLESTY 709 (788)
Q Consensus 681 ~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 709 (788)
+.+ ++++++.. -...+-++.+|+..
T Consensus 375 ~a~-~~~~~~~~---~g~~~aa~~ie~~~ 399 (401)
T d1rrva_ 375 RAE-AVAGMVLT---DGAAAAADLVLAAV 399 (401)
T ss_dssp HHH-HHTTTCCC---CHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHhh---cCHHHHHHHHHHHh
Confidence 432 23333221 13445556666543
|
| >d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: TDP-epi-vancosaminyltransferase GtfA species: Amycolatopsis orientalis [TaxId: 31958]
Probab=97.51 E-value=0.00048 Score=71.47 Aligned_cols=131 Identities=8% Similarity=0.033 Sum_probs=88.1
Q ss_pred CCeEEEecCCCCcC-CHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHh
Q 003891 525 GFITFGSFNNLAKI-TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 603 (788)
Q Consensus 525 ~~~~f~~~~~~~K~-~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 603 (788)
..+++.++...... .........+.+...+...++..+... ...+-.+++|.+.++++ ..+.
T Consensus 221 ~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~v~i~~~~p-~~~l--- 283 (391)
T d1pn3a_ 221 STPVYVGFGSSSRPATADAAKMAIKAVRASGRRIVLSRGWAD-------------LVLPDDGADCFVVGEVN-LQEL--- 283 (391)
T ss_dssp SCCEEEECTTCCSTHHHHHHHHHHHHHHHTTCCEEEECTTTT-------------CCCSSCCTTCCEESSCC-HHHH---
T ss_pred CCeEEEeccccccccHHHHHHHHHHHHHhcCCEEEEeccccc-------------cccccCCCCEEEecccC-HHHH---
Confidence 44566777655443 456667777777777766655543221 01122357899999986 4444
Q ss_pred cccccEeecCCCCCCchhHHHHhhhCCceeecCC--Cc-cCccchhHHHhhhCCccccc---CCHHHHHHHHHHHhcC
Q 003891 604 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SV-HAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASD 675 (788)
Q Consensus 604 ~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g--~~-~~~r~~~~~l~~~gl~~~ia---~~~~~y~~~a~~l~~d 675 (788)
+..+|+|+ ..+|.+|++|||++|+|+|+++- +. ...+.-|..+...|+.-.+. -+.++..+...++.+|
T Consensus 284 l~~a~~~v---~hgG~~t~~Eal~~G~P~v~~P~~~d~~~eQ~~nA~~l~~~G~g~~l~~~~~~~~~l~~~i~~~l~~ 358 (391)
T d1pn3a_ 284 FGRVAAAI---HHDSAGTTLLAMRAGIPQIVVRRVVDNVVEQAYHADRVAELGVGVAVDGPVPTIDSLSAALDTALAP 358 (391)
T ss_dssp HTTSSCEE---EESCHHHHHHHHHHTCCEEEECSSCCBTTBCCHHHHHHHHHTSEEEECCSSCCHHHHHHHHHHHTST
T ss_pred HhhccEEE---ecCchHHHHHHHHhCCcEEEeccccCCcchHHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHHhCH
Confidence 45699988 23788899999999999999873 32 23455677788878765442 3588899988888865
|
| >d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: UDP-glucosyltransferase GtfB species: Amycolatopsis orientalis [TaxId: 31958]
Probab=97.43 E-value=0.00063 Score=70.59 Aligned_cols=157 Identities=9% Similarity=-0.017 Sum_probs=96.8
Q ss_pred CeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcc
Q 003891 526 FITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS 605 (788)
Q Consensus 526 ~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~ 605 (788)
.+++.++.... .....++...+.+...|...+|..+.... .. .-.+++|++.++++ ..+. +.
T Consensus 239 ~~i~~~~~~~~-~~~~~~~~~~~al~~~~~~~~~~~~~~~~------------~~-~~~~~nv~~~~~~p-~~~~---l~ 300 (401)
T d1iira_ 239 PPVYLGFGSLG-APADAVRVAIDAIRAHGRRVILSRGWADL------------VL-PDDGADCFAIGEVN-HQVL---FG 300 (401)
T ss_dssp CCEEEECC----CCHHHHHHHHHHHHHTTCCEEECTTCTTC------------CC-SSCGGGEEECSSCC-HHHH---GG
T ss_pred CeEEEccCccc-cchHHHHHHHHHHHHcCCeEEEeccCCcc------------cc-ccCCCCEEEEeccC-HHHH---Hh
Confidence 45666665553 45677777778888887776666543311 11 11247899999986 4444 45
Q ss_pred cccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCccccc---CCHHHHHHHHHHHhcCHHHHHHH
Q 003891 606 LMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVTALANL 682 (788)
Q Consensus 606 ~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia---~~~~~y~~~a~~l~~d~~~~~~~ 682 (788)
.+|+|+ ..+|++|+.|||+.|||+|.++-. .-....+..+...|..-.+. -|.++..+...++.+ ++.+++.
T Consensus 301 ~~~~~V---~hgG~~t~~Eal~~GvP~v~~P~~-~DQ~~na~~l~~~G~g~~l~~~~~~~~~l~~ai~~~l~-~~~~~~a 375 (401)
T d1iira_ 301 RVAAVI---HHGGAGTTHVAARAGAPQILLPQM-ADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATALT-PETHARA 375 (401)
T ss_dssp GSSEEE---ECCCHHHHHHHHHHTCCEEECCCS-TTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHHTS-HHHHHHH
T ss_pred hcCEEE---ecCCchHHHHHHHhCCCEEEcccc-ccHHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHHhC-HHHHHHH
Confidence 599998 248889999999999999998631 12344566677778764442 268888888888885 4444333
Q ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHH
Q 003891 683 RMSLRDLMSKSPVCDGQNFALGLESTY 709 (788)
Q Consensus 683 r~~~~~~~~~~~~~~~~~~~~~~e~~~ 709 (788)
++ +.+++.+ -....-++.+++..
T Consensus 376 ~~-~~~~~~~---~~~~~aa~~i~~~i 398 (401)
T d1iira_ 376 TA-VAGTIRT---DGAAVAARLLLDAV 398 (401)
T ss_dssp HH-HHHHSCS---CHHHHHHHHHHHHH
T ss_pred HH-HHHHHHh---cChHHHHHHHHHHH
Confidence 22 2233321 23444556665554
|
| >d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid 3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId: 29760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: UDP glucose:flavonoid 3-o-glucosyltransferase species: Grape (Vitis vinifera) [TaxId: 29760]
Probab=97.29 E-value=0.0012 Score=69.86 Aligned_cols=143 Identities=13% Similarity=0.053 Sum_probs=97.0
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHH
Q 003891 523 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 602 (788)
Q Consensus 523 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 602 (788)
+...++|.+++......++.++.....+...+...+|....... ....+..... .++++.+.++++ +.+.+
T Consensus 263 ~~~~~v~~s~gs~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~-~~l~~~~~~~------~~~nv~~~~~~p-q~~lL- 333 (450)
T d2c1xa1 263 KPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKAR-VHLPEGFLEK------TRGYGMVVPWAP-QAEVL- 333 (450)
T ss_dssp CTTCEEEEECCSSCCCCHHHHHHHHHHHHHHTCCEEEECCGGGG-GGSCTTHHHH------HTTTEEEESCCC-HHHHH-
T ss_pred CccceeeecccccccCCHHHHHHHHHHHHhcCCeEEEEECCCcc-ccCChhhhhh------ccccccccccCC-hHhhh-
Confidence 45678899999998889999888888888888777776543210 0110111111 147899999987 44444
Q ss_pred hcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHH-hhhCCcccc---cCCHHHHHHHHHHHhcCHHH
Q 003891 603 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL-TKVGLKHLI---AKNEDEYVQLALQLASDVTA 678 (788)
Q Consensus 603 ~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l-~~~gl~~~i---a~~~~~y~~~a~~l~~d~~~ 678 (788)
.+..+|+|+ ..+|..|+.||++.|||+|+++-. .-....+..+ ...|+.--+ .-|.++..+...++.+|+..
T Consensus 334 ~hp~~~~fI---tHGG~~s~~eal~~GvP~v~~P~~-~DQ~~na~rv~~~~G~G~~l~~~~~t~~~l~~ai~~vL~d~~y 409 (450)
T d2c1xa1 334 AHEAVGAFV---THCGWNSLWESVAGGVPLICRPFF-GDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQEKG 409 (450)
T ss_dssp TSTTEEEEE---ECCCHHHHHHHHHHTCCEEECCCS-TTHHHHHHHHHHTSCCEEECGGGSCCHHHHHHHHHHHHHSHHH
T ss_pred ccCceeEEE---ccCCccHHHHHHHcCCCEEecccc-cchHHHHHHHHHHcCcEEEecCCCcCHHHHHHHHHHHhcCcHH
Confidence 456788988 247778999999999999998842 1122233444 345765433 23789999999999999853
|
| >d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase {Medicago truncatula [TaxId: 3880]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: (Iso)flavonoid glycosyltransferase species: Medicago truncatula [TaxId: 3880]
Probab=97.28 E-value=0.0011 Score=70.46 Aligned_cols=141 Identities=16% Similarity=0.155 Sum_probs=95.5
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCH---HHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 003891 523 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCD---SVRHRFLSTLEQLGLESLRVDLLPLILLNHD 599 (788)
Q Consensus 523 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~---~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~ 599 (788)
....++|.++.......++.......+++..+...+|.++...... .....+... .+++|.+..++| +.+
T Consensus 286 ~~~~~v~~~~gs~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~Nv~~~~~~P-q~~ 358 (473)
T d2pq6a1 286 EPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNE------IADRGLIASWCP-QDK 358 (473)
T ss_dssp CTTCEEEEECCSSSCCCHHHHHHHHHHHHHTTCEEEEECCGGGSTTTGGGSCHHHHHH------HTTTEEEESCCC-HHH
T ss_pred CCCceeeeccCccccccHHHHHHHHHHHHhcCCeEEEEEccCCcccccccCcccchhh------ccCceEEeeeCC-HHH
Confidence 4456788899999999999999999999999999999875331110 011111111 147899999987 454
Q ss_pred HHHhcccccEeecCCCCCCchhHHHHhhhCCceeecC--CCccCccchhHHH-hhhCCcccc--cCCHHHHHHHHHHHhc
Q 003891 600 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLL-TKVGLKHLI--AKNEDEYVQLALQLAS 674 (788)
Q Consensus 600 ~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~~~l-~~~gl~~~i--a~~~~~y~~~a~~l~~ 674 (788)
.+ ....|++|+ ..+|..|+.||++.|||+|.++ ++.+. -+..+ ..+|+.-.+ --+.++..+...++.+
T Consensus 359 lL-~hp~~~~fI---tHGG~~s~~Eal~~GVP~lv~P~~~DQ~~---na~rv~~~~G~G~~l~~~~t~~~l~~ai~~vl~ 431 (473)
T d2pq6a1 359 VL-NHPSIGGFL---THCGWNSTTESICAGVPMLCWPFFADQPT---DCRFICNEWEIGMEIDTNVKREELAKLINEVIA 431 (473)
T ss_dssp HH-TSTTEEEEE---ECCCHHHHHHHHHHTCCEEECCCSTTHHH---HHHHHHHTSCCEEECCSSCCHHHHHHHHHHHHT
T ss_pred Hh-cCCcCcEEE---ecCCccHHHHHHHcCCCEEeccchhhhHH---HHHHHHHHcCeEEeeCCCcCHHHHHHHHHHHHc
Confidence 44 345688888 2477779999999999999987 33221 12222 333443211 2378999999999999
Q ss_pred CHH
Q 003891 675 DVT 677 (788)
Q Consensus 675 d~~ 677 (788)
|+.
T Consensus 432 d~~ 434 (473)
T d2pq6a1 432 GDK 434 (473)
T ss_dssp SHH
T ss_pred CCh
Confidence 985
|
| >d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Peptidoglycan biosynthesis glycosyltransferase MurG domain: Peptidoglycan biosynthesis glycosyltransferase MurG species: Escherichia coli [TaxId: 562]
Probab=96.97 E-value=0.002 Score=65.59 Aligned_cols=153 Identities=14% Similarity=0.075 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHHHhcccccEeecCCCC-CC
Q 003891 540 PKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AG 618 (788)
Q Consensus 540 ~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~-~g 618 (788)
..+.+.+.+.+...+.....+...+... .......... ... ..+...+.... ....+..||+++ . +|
T Consensus 190 ~~~~~~~~~~~~~l~~~~~~i~~~~~~~--~~~~~~~~~~--~~~-~~~~v~~f~~~---~~~lm~~adl~I----t~~G 257 (351)
T d1f0ka_ 190 RILNQTMPQVAAKLGDSVTIWHQSGKGS--QQSVEQAYAE--AGQ-PQHKVTEFIDD---MAAAYAWADVVV----CRSG 257 (351)
T ss_dssp HHHHHHHHHHHHHHGGGEEEEEECCTTC--HHHHHHHHHH--TTC-TTSEEESCCSC---HHHHHHHCSEEE----ECCC
T ss_pred hhhHHHHHHhhhhhcccceeeeeccccc--hhhhhhhhcc--ccc-ccceeeeehhh---HHHHHHhCchhh----cccc
Confidence 3444555555555555555554333221 2222222222 222 44555666543 344556699998 5 67
Q ss_pred chhHHHHhhhCCceeecCCCc--cCccchhHHHhhhCCcccccC---CHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Q 003891 619 TTTTCESLYMGVPCVTMAGSV--HAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTALANLRMSLRDLMSKS 693 (788)
Q Consensus 619 ~~t~~eal~~GvPvvt~~g~~--~~~r~~~~~l~~~gl~~~ia~---~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~ 693 (788)
++|+.||+.+|+|+|..+=.. .....-|-.|...|+.-.+-. +.+...+....+ |++.+..|++++++.. .
T Consensus 258 ~~T~~Eal~~g~P~I~iP~~~~~~~Q~~NA~~l~~~G~~~~~~~~~~~~e~l~~~l~~l--~~~~~~~~~~~~~~~~--~ 333 (351)
T d1f0ka_ 258 ALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGW--SRETLLTMAERARAAS--I 333 (351)
T ss_dssp HHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHTC--CHHHHHHHHHHHHHTC--C
T ss_pred chHHHHHHHhCCceeeeecccCCchHHHHHHHHHHCCCEEEechhhCCHHHHHHHHHhh--CHHHHHHHHHHHHccC--C
Confidence 799999999999999876221 123345788999998755532 234443333333 7788888888887541 1
Q ss_pred CCCChHHHHHHHHHHH
Q 003891 694 PVCDGQNFALGLESTY 709 (788)
Q Consensus 694 ~~~~~~~~~~~~e~~~ 709 (788)
+ -..++.++.+|+.-
T Consensus 334 ~-~~a~~i~~~i~~l~ 348 (351)
T d1f0ka_ 334 P-DATERVANEVSRVA 348 (351)
T ss_dssp T-THHHHHHHHHHHHH
T ss_pred c-cHHHHHHHHHHHHH
Confidence 1 12566666666654
|
| >d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: Hydroquinone glucosyltransferase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.62 E-value=0.011 Score=62.27 Aligned_cols=146 Identities=14% Similarity=0.047 Sum_probs=94.4
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHH-----------HHHHHHHHHHHcCCCCCcEEEc
Q 003891 523 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDS-----------VRHRFLSTLEQLGLESLRVDLL 591 (788)
Q Consensus 523 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~-----------~~~~l~~~~~~~gi~~~rv~~~ 591 (788)
..+.+++.+++......+..+......+...+...+|..+....... ....+-.-+.... .++.|.+.
T Consensus 261 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~ 339 (471)
T d2vcha1 261 PLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERT-KKRGFVIP 339 (471)
T ss_dssp CTTCEEEEECTTTCCCCHHHHHHHHHHHHHTTCEEEEEECCCCSSTTTTTTCC--CSCGGGGSCTTHHHHT-TTTEEEEE
T ss_pred CCccccccccccccCCCHHHHHHHHHHHHhhcCCeEEEeccccccccccccccccccchhhhCCchhhhhc-cCCCeeec
Confidence 45677888888888888888888888888888888887643211100 0000100111111 24789999
Q ss_pred CCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecC--CCccCccchhHHH-hhhCCccccc------CCH
Q 003891 592 PLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLL-TKVGLKHLIA------KNE 662 (788)
Q Consensus 592 ~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~--g~~~~~r~~~~~l-~~~gl~~~ia------~~~ 662 (788)
+++| +.+.|+ +..+|+|+ ..+|..|+.||+++|||+|.++ ++.+. -+..+ ..+|+.--+- -+.
T Consensus 340 ~w~P-q~~lL~-hp~~~~fV---tHGG~gS~~EAl~~GvP~v~~P~~~DQ~~---nA~rv~e~lG~Gv~l~~~~~~~~t~ 411 (471)
T d2vcha1 340 FWAP-QAQVLA-HPSTGGFL---THCGWNSTLESVVSGIPLIAWPLYAEQKM---NAVLLSEDIRAALRPRAGDDGLVRR 411 (471)
T ss_dssp SCCC-HHHHHH-STTEEEEE---ECCCHHHHHHHHHHTCCEEECCCSTTHHH---HHHHHHHTTCCEECCCCCTTSCCCH
T ss_pred ccCC-HHHHhc-CccCCEEE---ecCCccHHHHHHHcCCCEEEcccccccHH---HHHHHHHHheeEEEEecCCCCcCCH
Confidence 9998 565553 45688988 2477779999999999999987 34331 23333 4444433221 278
Q ss_pred HHHHHHHHHHhcCHH
Q 003891 663 DEYVQLALQLASDVT 677 (788)
Q Consensus 663 ~~y~~~a~~l~~d~~ 677 (788)
++..+...++.+|++
T Consensus 412 ~~l~~ai~~vl~~~~ 426 (471)
T d2vcha1 412 EEVARVVKGLMEGEE 426 (471)
T ss_dssp HHHHHHHHHHHTSTH
T ss_pred HHHHHHHHHHhCCcH
Confidence 898888888888864
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.53 E-value=0.59 Score=48.41 Aligned_cols=308 Identities=10% Similarity=-0.038 Sum_probs=178.5
Q ss_pred HHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003891 4 ASYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 83 (788)
Q Consensus 4 ~~~~kaL~~~P~~~~a~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~k 83 (788)
..++..|+.+|+.+.........+..+ ...+++.+.+..| ...|.+...-+..+.+....|+.++|...+..
T Consensus 56 ~~i~~Fl~~~p~~P~~~~lr~~~l~~L----~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~ 127 (450)
T d1qsaa1 56 VTVTNFVRANPTLPPARTLQSRFVNEL----ARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKE 127 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHH----HHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCChhHHHHHHHHHHHH----HhccCHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 346778888999887755444443333 4567776654433 34677888888889999999999999988877
Q ss_pred HHHhCCC------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHH-------------HhhCCCcHHHHHH-
Q 003891 84 AALERPM------------------YAEAYCNMGVIYKNRGDLESAIACYERC-------------LAVSPNFEIAKNN- 131 (788)
Q Consensus 84 al~~~p~------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a-------------l~~~p~~~~~~~~- 131 (788)
+...... ....+..........|++..|...+... +..+|........
T Consensus 128 lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~ 207 (450)
T d1qsaa1 128 LWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART 207 (450)
T ss_dssp HHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhc
Confidence 7543222 2334444555666667776665544321 1112211110000
Q ss_pred -----HHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHH----HHHHHHcCChHHHHHHHHHHHhcCCCCHH
Q 003891 132 -----MAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNL----GVAYGEMLKFDMAIVFYELAFHFNPHCAE 202 (788)
Q Consensus 132 -----la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l----a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 202 (788)
....+...+.......+.+.|...+.......+.....+... +..+...+..+.+...+........+...
T Consensus 208 ~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 287 (450)
T d1qsaa1 208 TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSL 287 (450)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHH
T ss_pred CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHH
Confidence 000011111222234577778887777766655554433332 22233456677777777776655544443
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------
Q 003891 203 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-------------- 268 (788)
Q Consensus 203 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-------------- 268 (788)
....++. ....+++..+...+...-......+...+-+|..+...|+.++|..+|..+... ++.
T Consensus 288 ~~w~~~~-al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~ 365 (450)
T d1qsaa1 288 IERRVRM-ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ-RGFYPMVAAQRIGEEYE 365 (450)
T ss_dssp HHHHHHH-HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CSHHHHHHHHHTTCCCC
T ss_pred HHHHHHH-HHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC-CChHHHHHHHHcCCCCC
Confidence 3333443 455678888888877653333344677888999999999999999988887542 111
Q ss_pred ---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchHHH
Q 003891 269 ---------------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLF 325 (788)
Q Consensus 269 ---------------~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~~~ 325 (788)
...-...+..+...|+..+|...+..++...+ .. ....++......|....++
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~~--~~--~~~~la~lA~~~g~~~~aI 433 (450)
T d1qsaa1 366 LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKS--KT--EQAQLARYAFNNQWWDLSV 433 (450)
T ss_dssp CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--HH--HHHHHHHHHHHTTCHHHHH
T ss_pred CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCCC--HH--HHHHHHHHHHHCCChhHHH
Confidence 01123456677788888888888877764322 11 1223344444555555444
|
| >d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase UGT71G1 {Medicago truncatula [TaxId: 3880]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: Triterpene UDP-glucosyl transferase UGT71G1 species: Medicago truncatula [TaxId: 3880]
Probab=96.39 E-value=0.013 Score=61.61 Aligned_cols=140 Identities=13% Similarity=0.010 Sum_probs=85.9
Q ss_pred CCeEEEecC-CCCcCCHHHHHHHHHHHhHcCCcEEEEecCCCC--CHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHHH
Q 003891 525 GFITFGSFN-NLAKITPKVLQVWARILCAVPNSRLVVKCKPFC--CDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 601 (788)
Q Consensus 525 ~~~~f~~~~-~~~K~~~~~~~~~~~il~~~p~~~l~l~~~~~~--~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~~ 601 (788)
..+++.++. ......++.+......+...+...+|....... .+...+. . . .++++.+..+.+ ..+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~-~~~n~~v~~~~p--q~~~ 343 (461)
T d2acva1 274 KSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEW----M---E-LEGKGMICGWAP--QVEV 343 (461)
T ss_dssp TCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCCGGGSCTTHHHH----H---H-HHCSEEEESSCC--HHHH
T ss_pred cceeeeeccccccCCCHHHHHHHHHHHHhcCccEEEEeecccccCCccchhh----h---c-cCCCeEEEecCC--HHHH
Confidence 444444444 446677888888888888877767776543211 1111111 1 1 136677777765 4566
Q ss_pred HhcccccEeecCCCCCCchhHHHHhhhCCceeecCC--CccCccchhHHH-hhhCCcccc---------cCCHHHHHHHH
Q 003891 602 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLL-TKVGLKHLI---------AKNEDEYVQLA 669 (788)
Q Consensus 602 ~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g--~~~~~r~~~~~l-~~~gl~~~i---------a~~~~~y~~~a 669 (788)
..+..||+|+ ..+|..|+.||++.|||+|+++- +.+ ..|.-+ ..+|+.-.+ .-+.++..+..
T Consensus 344 l~~p~~~~fI---tHGG~gs~~eAl~~GVP~l~~P~~~DQ~---~nA~rlve~~G~G~~l~~~~~~~~~~~t~~~l~~a~ 417 (461)
T d2acva1 344 LAHKAIGGFV---SHCGWNSILESMWFGVPILTWPIYAEQQ---LNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGL 417 (461)
T ss_dssp HHSTTEEEEE---ECCCHHHHHHHHHTTCCEEECCCSTTHH---HHHHHHHHTSCCEEESCSSCCTTCCCCCHHHHHHHH
T ss_pred HhcccCCEEE---ecCCccHHHHHHHcCCCEEeCCcccchH---HHHHHHHHHhCceEEeeccccccCCccCHHHHHHHH
Confidence 6788899998 23777799999999999999883 321 122222 333443222 14788999999
Q ss_pred HHHhcC-HHHHH
Q 003891 670 LQLASD-VTALA 680 (788)
Q Consensus 670 ~~l~~d-~~~~~ 680 (788)
.++.++ +..|+
T Consensus 418 ~~vl~~d~~~r~ 429 (461)
T d2acva1 418 KDLMDKDSIVHK 429 (461)
T ss_dssp HHHTCTTCTHHH
T ss_pred HHHhhCCHHHHH
Confidence 998864 53443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.29 E-value=0.17 Score=50.29 Aligned_cols=263 Identities=13% Similarity=0.099 Sum_probs=145.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 003891 28 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 107 (788)
Q Consensus 28 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~ 107 (788)
-..|..+.+.|.|+.|..+|... .-+-.+..++...++++.|.+.+.++ ++...|..+...+.+..+
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~--------~d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e 84 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKE 84 (336)
T ss_dssp -----------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHhC--------CCHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcH
Confidence 34577778889999999999753 12445567788899999999988776 567888888888888877
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 003891 108 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 187 (788)
Q Consensus 108 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 187 (788)
..-|... ...+.. +++.. ..+-..+...|.+++.+.+++.++...+.+...+..++.+|.+.+ .++-+
T Consensus 85 ~~la~i~-~~~~~~---~~d~l-------~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~ 152 (336)
T d1b89a_ 85 FRLAQMC-GLHIVV---HADEL-------EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMR 152 (336)
T ss_dssp HHHHHHT-TTTTTT---CHHHH-------HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHH
T ss_pred HHHHHHH-HHHhhc---CHHHH-------HHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHH
Confidence 6654221 111111 22111 223334455779999999999998888888888888888776654 45555
Q ss_pred HHHHHH-HhcCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003891 188 VFYELA-FHFNPH-------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 259 (788)
Q Consensus 188 ~~~~~a-l~~~p~-------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~ 259 (788)
+.++.. ...++. ....|-.+..+|.+.|++++|+..+-+- |.+..-....-.++.+..+.+..-+...
T Consensus 153 e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~----~~~~~~~~~f~e~~~k~~N~e~~~~~i~ 228 (336)
T d1b89a_ 153 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH----PTDAWKEGQFKDIITKVANVELYYRAIQ 228 (336)
T ss_dssp HHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS----TTTTCCHHHHHHHHHHCSSTHHHHHHHH
T ss_pred HHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHc----chhhhhHHHHHHHHHccCChHHHHHHHH
Confidence 555442 111211 1122345667777888888877655431 1111112222333444455444444444
Q ss_pred HHHHhCCCCHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhHHhHHHHhhhccCCCchH
Q 003891 260 KAIAANPTYAEA----------YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 323 (788)
Q Consensus 260 kal~~~p~~~~~----------~~~la~~~~~~g~~~eA~~~~~~al~l~p~~~~a~~~~lla~~~l~~g~~~~ 323 (788)
-.++.+|....- ...+.....+.++..-...+++...+.+ +. + .+-.+...|++..+.+.
T Consensus 229 ~yL~~~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n--~~-~-vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 229 FYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN--NK-S-VNESLNNLFITEEDYQA 298 (336)
T ss_dssp HHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC--CH-H-HHHHHHHHHHHTTCHHH
T ss_pred HHHHcCHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC--hH-H-HHHHHHHHHhCcchhHH
Confidence 444444433211 1224445556666666666666654422 22 2 34456677777766543
|
| >d1v4va_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Thermus thermophilus [TaxId: 274]
Probab=95.89 E-value=0.04 Score=56.33 Aligned_cols=146 Identities=16% Similarity=0.155 Sum_probs=100.3
Q ss_pred CCCCeEEEecCCCC--cCCHHHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 003891 523 TNGFITFGSFNNLA--KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 600 (788)
Q Consensus 523 ~~~~~~f~~~~~~~--K~~~~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~ 600 (788)
+.+.++..++.+.. +.......+...+....++..+++...+ ....+....+.+.. ..++.+.+..+ +.++
T Consensus 193 ~~~~~~lvt~hr~~n~~~~~~~~~~~~~~~~~~~~~~~i~p~~~--~~~~~~~~~~~~~~----~~n~~~~~~l~-~~~~ 265 (373)
T d1v4va_ 193 PEGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHL--NPVVREAVFPVLKG----VRNFVLLDPLE-YGSM 265 (373)
T ss_dssp CSSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECCS--CHHHHHHHHHHHTT----CTTEEEECCCC-HHHH
T ss_pred ccccceeEEeccccccchHHHHHHHHHHHhhhcccceeeeeecc--cccchhhhhhhhcc----cccceeeccch-HHHH
Confidence 34556677777663 3335566777777777788777665433 23334333333322 36899999887 8999
Q ss_pred HHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHHHH
Q 003891 601 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALA 680 (788)
Q Consensus 601 ~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~~~ 680 (788)
+.++..|++++ -++|....||.++|+|||++...+ +|.-+ + ..|..-++..|.++..+....+..++..+.
T Consensus 266 l~ll~~s~~vi----gnSssgi~Ea~~lg~P~Inir~~~--eRqeg--~-~~g~nvlv~~d~~~I~~~i~~~l~~~~~~~ 336 (373)
T d1v4va_ 266 AALMRASLLLV----TDSGGLQEEGAALGVPVVVLRNVT--ERPEG--L-KAGILKLAGTDPEGVYRVVKGLLENPEELS 336 (373)
T ss_dssp HHHHHTEEEEE----ESCHHHHHHHHHTTCCEEECSSSC--SCHHH--H-HHTSEEECCSCHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhhhceeEe----cccchhhhcchhhcCcEEEeCCCc--cCHHH--H-hcCeeEEcCCCHHHHHHHHHHHHcCHHHHh
Confidence 99999999998 677888999999999999884321 44432 2 236666777888888888888889986655
Q ss_pred HHHH
Q 003891 681 NLRM 684 (788)
Q Consensus 681 ~~r~ 684 (788)
.+..
T Consensus 337 ~~~~ 340 (373)
T d1v4va_ 337 RMRK 340 (373)
T ss_dssp HHHH
T ss_pred hccc
Confidence 4433
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.73 E-value=1.4 Score=45.37 Aligned_cols=261 Identities=8% Similarity=-0.130 Sum_probs=168.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH------
Q 003891 29 DLGTSLKLAGNTQDGIQKYYEALKIDPH------------------YAPAYYNLGVVYSELMQYDTALGCYEKA------ 84 (788)
Q Consensus 29 ~lg~~~~~~g~~~~A~~~~~~al~~~p~------------------~~~~~~~lg~~~~~~g~~~~A~~~~~ka------ 84 (788)
..+.+....|+..+|...+..+-..... ....+..........|++..|...+..+
T Consensus 107 ~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~ 186 (450)
T d1qsaa1 107 NYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQT 186 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHH
Confidence 3455667778888888777666543222 2333334555566677776666655421
Q ss_pred -------HHhCC-----------CCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhh
Q 003891 85 -------ALERP-----------MYAE--AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK 144 (788)
Q Consensus 85 -------l~~~p-----------~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~ 144 (788)
+..+| .... .....+..-....+.+.|...+.......+-...... .....++....
T Consensus 187 ~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~---~~~~~~a~~~~ 263 (450)
T d1qsaa1 187 IASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQ---ELRDIVAWRLM 263 (450)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHH---HHHHHHHHTSC
T ss_pred HHHHHHHHHhChHhHHHHHhcCCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHH---HHHHHHHHHHH
Confidence 11122 2221 1223333344456788888888887766555543332 22233344444
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003891 145 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 224 (788)
Q Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 224 (788)
..+..+.+...+........+.......++ .....+++..+...++..-..........+.+|..+...|+.++|...|
T Consensus 264 ~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~ 342 (450)
T d1qsaa1 264 GNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEIL 342 (450)
T ss_dssp STTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCchHHHHHHHHhhcccccchHHHHHHHH-HHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHH
Confidence 566778888888777665544443333344 4556789999988887654433345788899999999999999999999
Q ss_pred HHHHhhC-------------------------CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 003891 225 QMALSIK-------------------------PNFS---QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 276 (788)
Q Consensus 225 ~~al~~~-------------------------p~~~---~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~~~~~la 276 (788)
..+.... +... ..-...+..+...|+...|...+..++.. .++.-...++
T Consensus 343 ~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~--~~~~~~~~la 420 (450)
T d1qsaa1 343 HQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS--KSKTEQAQLA 420 (450)
T ss_dssp HHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC--CCHHHHHHHH
Confidence 9876531 0000 12345677888999999999999888754 3466788899
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 003891 277 VLYRDAGSISLAIDAYEQC 295 (788)
Q Consensus 277 ~~~~~~g~~~eA~~~~~~a 295 (788)
.+..+.|.+..|+....++
T Consensus 421 ~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 421 RYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHCCChhHHHHHHHHH
Confidence 9999999999999888776
|
| >d1o6ca_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=94.95 E-value=0.12 Score=52.51 Aligned_cols=142 Identities=15% Similarity=0.118 Sum_probs=84.2
Q ss_pred CCCCeEEEecCCCCcCCH---HHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHH
Q 003891 523 TNGFITFGSFNNLAKITP---KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 599 (788)
Q Consensus 523 ~~~~~~f~~~~~~~K~~~---~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~ 599 (788)
..+..++.++.+..-... ..+.....++...++..+++-..+ ....+......-...+++.+.+..+ +.+
T Consensus 196 ~~~~~ilvt~Hr~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~~~~~~~~~~ni~~~~~l~-~~~ 268 (377)
T d1o6ca_ 196 GEDKMILLTAHRRENLGEPMENMFKAIRRIVGEFEDVQVVYPVHL------NPVVREAAHKHFGDSDRVHLIEPLE-VID 268 (377)
T ss_dssp TTSEEEEECC----------HHHHHHHHHHHHHCTTEEEEEC----------CHHHHHHHHC--CCSSEEECCCCC-HHH
T ss_pred cCCceEEEEeccccccccchHHHHHHHHhhccccccccccccccc------ccccchhhhhccccccceEeccccc-hHH
Confidence 355666777777654433 344445566666676666554322 1223333333333457899999987 899
Q ss_pred HHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCC--ccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHH
Q 003891 600 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGS--VHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVT 677 (788)
Q Consensus 600 ~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~--~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~ 677 (788)
|+.++..|++++ -++|....||-++|+|+|++... .-.+|.. |-.-++..+.++-.+..-.+.+|+.
T Consensus 269 fl~llk~s~~vI----gnSss~i~Ea~~lg~P~Inir~~tERqe~~~~-------g~nilv~~~~~~I~~~i~~~l~~~~ 337 (377)
T d1o6ca_ 269 FHNFAAKSHFIL----TDSGGVQEEAPSLGKPVLVLRDTTERPEGVEA-------GTLKLAGTDEENIYQLAKQLLTDPD 337 (377)
T ss_dssp HHHHHHHCSEEE----EC--CHHHHGGGGTCCEEEECSCCC---CTTT-------TSSEEECSCHHHHHHHHHHHHHCHH
T ss_pred HHHHHhhhheee----cccchhHHhhhhhhceEEEeCCCCcCcchhhc-------CeeEECCCCHHHHHHHHHHHHhChH
Confidence 999999999998 56677789999999999998442 2223322 5555666677777777777778876
Q ss_pred HHHHH
Q 003891 678 ALANL 682 (788)
Q Consensus 678 ~~~~~ 682 (788)
....+
T Consensus 338 ~~~~~ 342 (377)
T d1o6ca_ 338 EYKKM 342 (377)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 55443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.82 E-value=2.1 Score=42.03 Aligned_cols=244 Identities=14% Similarity=0.110 Sum_probs=144.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Q 003891 30 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 109 (788)
Q Consensus 30 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~p~~~~~~~~la~~~~~~g~~~ 109 (788)
+..++...++++.|.+.+.+. ++...|..+...+....+..-|... .. ..-.+++-.......|...|.++
T Consensus 46 l~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la~i~-~~---~~~~~~d~l~~~v~~ye~~~~~e 116 (336)
T d1b89a_ 46 LASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMC-GL---HIVVHADELEELINYYQDRGYFE 116 (336)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHT-TT---TTTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHHHHHH-HH---HhhcCHHHHHHHHHHHHHcCChH
Confidence 445666777788877777655 5678898888888888776554221 11 11235566667888899999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHH-HHhCCC-------CHHHHHHHHHHHHHcC
Q 003891 110 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKA-LYYNWH-------YADAMYNLGVAYGEML 181 (788)
Q Consensus 110 ~A~~~~~~al~~~p~~~~~~~~la~~l~~lg~~~~~~g~~~~A~~~~~~a-l~~~p~-------~~~~~~~la~~~~~~g 181 (788)
+.+.+++.++...+.+...+..++.++... +.++-.++++.. ...++. ....|-.+..+|.+.|
T Consensus 117 ~Li~~Le~~~~~~~~~~~~~~~L~~lyak~--------~~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~ 188 (336)
T d1b89a_ 117 ELITMLEAALGLERAHMGMFTELAILYSKF--------KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYE 188 (336)
T ss_dssp HHHHHHHHHTTSTTCCHHHHHHHHHHHHTT--------CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCccchHHHHHHHHHHHHh--------ChHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcC
Confidence 999999999988888776666655554332 333333333321 101100 0112455677888889
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHcCCH
Q 003891 182 KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS----------LNNLGVVYTVQGKM 251 (788)
Q Consensus 182 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~----------~~~la~~~~~~g~~ 251 (788)
++++|+..+-.- |.+..-....-.++.+..+.+..-+...-.++.+|....- ...+.....+.++.
T Consensus 189 ~~~~A~~~~i~~----~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l 264 (336)
T d1b89a_ 189 EYDNAIITMMNH----PTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQL 264 (336)
T ss_dssp CHHHHHHHHHHS----TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCT
T ss_pred CHHHHHHHHHHc----chhhhhHHHHHHHHHccCChHHHHHHHHHHHHcCHHHHHHHHHHhccCCCHHHHHHHHHhcCCc
Confidence 998887665331 1111112223334455555555444444445545443221 12233444555666
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003891 252 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 300 (788)
Q Consensus 252 ~eA~~~l~kal~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~l~p 300 (788)
.-...+++.... .++..++..++.+|.+.++++. .++.++...
T Consensus 265 ~li~p~Le~v~~--~n~~~vn~al~~lyie~~d~~~----l~~~i~~~~ 307 (336)
T d1b89a_ 265 PLVKPYLRSVQN--HNNKSVNESLNNLFITEEDYQA----LRTSIDAYD 307 (336)
T ss_dssp TTTHHHHHHHHT--TCCHHHHHHHHHHHHHTTCHHH----HHHHHHHCC
T ss_pred HHHHHHHHHHHH--cChHHHHHHHHHHHhCcchhHH----HHHHHHHhc
Confidence 666666666443 3456789999999999999754 455554443
|
| >d1f6da_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Escherichia coli [TaxId: 562]
Probab=92.43 E-value=0.97 Score=45.47 Aligned_cols=138 Identities=14% Similarity=0.108 Sum_probs=87.0
Q ss_pred CCCeEEEecCCCCcCCH---HHHHHHHHHHhHcCCcEEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcCCcCCcHHH
Q 003891 524 NGFITFGSFNNLAKITP---KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 600 (788)
Q Consensus 524 ~~~~~f~~~~~~~K~~~---~~~~~~~~il~~~p~~~l~l~~~~~~~~~~~~~l~~~~~~~gi~~~rv~~~~~~~~~~~~ 600 (788)
++.++..++.+..-... ..+.+...+.....+..+++-..+ ....+....+.+ +- ..++.+.+..+ +.+|
T Consensus 204 ~~~~ilvt~H~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~p~~~--~~~~~~~~~~~~---~~-~~ni~~~~~l~-~~~f 276 (376)
T d1f6da_ 204 DKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPVHL--NPNVREPVNRIL---GH-VKNVILIDPQE-YLPF 276 (376)
T ss_dssp TSEEEEECCCCBSSCCHHHHHHHHHHHHHHHHCTTEEEEEECCB--CHHHHHHHHHHH---TT-CTTEEEECCCC-HHHH
T ss_pred CCceEEEecccchhhhhhHHHHHHHHhhhhhhcceeEEeccccc--chhhhhhHhhhh---cc-cccceeecccc-HHHH
Confidence 45566778776654443 334444444545455555443322 223333333322 22 36899999887 8999
Q ss_pred HHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCC-ccCccchhHHHhhhCCcccccCCHHHHHHHHHHHhcCHHH
Q 003891 601 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGS-VHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTA 678 (788)
Q Consensus 601 ~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~-~~~~r~~~~~l~~~gl~~~ia~~~~~y~~~a~~l~~d~~~ 678 (788)
+.++..|++++ -+.|.-..||-++|+|||++... ...+|+. .|-.-++..+.++-.+...+...++..
T Consensus 277 l~ll~~a~~vi----gnSssgi~Ea~~lg~P~Inir~~ter~~~~~------~g~~i~v~~~~~~I~~ai~~~l~~~~~ 345 (376)
T d1f6da_ 277 VWLMNHAWLIL----TDSGGIQEEAPSLGKPVLVMRDTTERPEAVT------AGTVRLVGTDKQRIVEEVTRLLKDENE 345 (376)
T ss_dssp HHHHHHCSEEE----ESSSGGGGTGGGGTCCEEECSSCCSCHHHHH------HTSEEECCSSHHHHHHHHHHHHHCHHH
T ss_pred HHHHhhceEEE----ecCcchHhhHHHhCCCEEEcCCCccCcccee------cCeeEECCCCHHHHHHHHHHHHhChHh
Confidence 99999999998 56666778999999999998442 1222222 255556777888888888878888744
|
| >d1pswa_ c.87.1.7 (A:) ADP-heptose LPS heptosyltransferase II {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: ADP-heptose LPS heptosyltransferase II domain: ADP-heptose LPS heptosyltransferase II species: Escherichia coli [TaxId: 562]
Probab=85.46 E-value=1.7 Score=42.71 Aligned_cols=53 Identities=8% Similarity=-0.029 Sum_probs=40.9
Q ss_pred EEEcCCcCCcHHHHHhcccccEeecCCCCCCchhHHHHhhhCCceeecCCCccCccch
Q 003891 588 VDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 645 (788)
Q Consensus 588 v~~~~~~~~~~~~~~~~~~~Dv~Ld~~~~~g~~t~~eal~~GvPvvt~~g~~~~~r~~ 645 (788)
+.+.|..+ -.+..+.+..+|+++ .+-+..+-=|.++|+|+|++-|.+-..|.+
T Consensus 244 ~~l~g~~s-l~el~~li~~a~l~I----~~Dtg~~HlAaa~g~p~i~lfg~~~~~~~~ 296 (348)
T d1pswa_ 244 RNLAGETQ-LDQAVILIAACKAIV----TNDSGLMHVAAALNRPLVALYGPSSPDFTP 296 (348)
T ss_dssp EECTTTSC-HHHHHHHHHTSSEEE----EESSHHHHHHHHTTCCEEEEESSSCTTSSC
T ss_pred ccccCCcc-HHHHHHHHhcceeEe----ecCccHHHHHHHcCCCEEEEECCCCHhhhC
Confidence 44566655 689999999999998 333445677899999999999988766654
|