Citrus Sinensis ID: 003893

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------79
Protein Sequence
MTNCEVNGVLSGQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTMPEASPSNEGDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVIDNLIPTRFCH
Secondary Structure (PSIPRED)
ccccccccccccccccccccccEEEcccccccccccccHHHHcccccccEEEccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccccccccccccccccEEEccccEEEEEcccccccccccccccEEEccccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccEEEcccccccEEcccHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccEEEEEccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccEEEEcccccccccccccEEEccccccEEEcccccccccccEEEccccccEEcccHHHHcccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHcccccccccccccccccccEEEcccccccccccEEEEEEEEEcccEEEEcccccccccEEEccccccccccHHHHHccccccccccccccccccccHHHcccccccEEEcccccccccccHHHHcccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEHHHHHHHHHHHHEEEEEEEEccHHHHHHHHHHHHccEEEEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccEEEEEcccccccccccHHHHHHcccccEEEccccccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHccccccEEEcccccccccccHHHHccccccEEEEEccccccccccHHHcccccccccEEEEccccccccccccHHHHcccccEEEEcccccccccccHHHHHHcccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHHHHHHcccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHccccccEEEEccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHccccccEEEEcccccccccccHHccccccEEEEEccccccccccHHHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHcccccHEEEEccccccccccccHHcccccccccccHEEEEEccccccccccccHHHHHccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcEEEEEcccccccccc
Coil and Loop (DISEMBL)
mtncevngvlsgqgfphfkSLKELYMDDARIALNTSFLQIIGesmpsiqylslsnssvsnnsrtldqglcplvhlqelhmadndlrgslpwclanmtslrildvssnqligsisssplihltsiedlilsdnhfqipisleplfnhsrlkifdaENNEINAEIIeshslttpnFQLQSLLLssgyrdgitfpkflynqhdleyVRLSHIKmneefpnwllenntklrQLSLvndslvgpfrlpihshkqlrlldvsknnfqghipleIGDILSRLTVFNIsmnaldgsipssfgnmnflqfldlsnnqltgeipehLAMGCVSLRSLALsnnnleghmfsrnfnLTNLIWLQLEgnhfvgeipqslskcsslqglflsnnslsgkiprwlgNLTVLRHIimpknhiegpiplefCQLRILQIldisdnnisgslpscydfvciEQVHLSKnmlhgqlkegtffnCLTLMILDLSynhlngnipdrvdgLSQLSYLILAHNnlegevpiQLCRLNQLQLldlsnnnlhghipscfdnttlherynngsslqpfetSFVImggmdvdpkkqiLESFDFTTKSItytyqgrvpsllsgldlscnrlighippqignltkIQTLnlshnnlagpipstfsnlrniesldlsynklswkipyqlVELNTLAVFSVAYNnlsgkipeRAAQFAtfnessyegnpflcgpplpicispttmpeaspsnegdnnlidmdIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVidnliptrfch
Flexible Loop (DISEMBL)
mtncevngvlsgqgfpHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSnnslsgkipRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTMPEASPSNEGDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVIDNLIPTRFCH
Low Complexity Region (SEG)
MTNCEVNGVLSGQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYlslsnssvsnnsRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVssnqligsisssPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDaenneinaeiieSHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVslrslalsnnnlEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIqlcrlnqlqlldlsnnnlHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTMPEASPSNEGDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVIDNLIPTRFCH
Disordered region (IsUnstruct)
******NGVLSGQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSL**********TLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICIS***************NLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVIDNLIPTRFC*
Disordered Region (DISOPRED)
MTNCEVNGVLSGQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHER********PFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCG****************************DIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVIDNLIPTRFC*
Disordered Region (DISEMBL)
MTNCEVNGVLSGQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTMPEASPSNEGDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVIDNLIPTRFCH
Disordered Region (DISPRO)
**NCEVNGVLSGQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICIS***************NLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVIDNLIPTRFCH
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTNCEVNGVLSGQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTMPEASPSNEGDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVIDNLIPTRFCH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	788	2.2.26 [Sep-21-2011]
Q9FL28	1173	LRR receptor-like serine/	no	no	0.758	0.509	0.313	4e-67
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.823	0.518	0.301	2e-63
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.772	0.487	0.303	1e-60
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.840	0.567	0.294	5e-59
Q9LJF3	1164	Receptor-like protein kin	no	no	0.835	0.565	0.302	8e-58
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.795	0.519	0.296	7e-56
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.795	0.519	0.295	1e-55
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.822	0.570	0.283	3e-55
Q9LHP4	1141	Receptor-like protein kin	no	no	0.786	0.543	0.283	9e-55
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.722	0.497	0.303	9e-55

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  256 bits (655), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 208/663 (31%), Positives = 318/663 (47%), Gaps = 65/663 (9%)

Query: 69  LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLI 128
           L  LVHLQ    A N L GS+P  +  + +L  LD+S NQL G I      +L +++ L+
Sbjct: 188 LGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRD-FGNLLNLQSLV 246

Query: 129 LSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDG 188
           L++N  +  I  E + N S L   +  +N++  +I                         
Sbjct: 247 LTENLLEGDIPAE-IGNCSSLVQLELYDNQLTGKI------------------------- 280

Query: 189 ITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHK 248
              P  L N   L+ +R+   K+    P+ L    T+L  L L  + LVGP    I   +
Sbjct: 281 ---PAELGNLVQLQALRIYKNKLTSSIPSSLFRL-TQLTHLGLSENHLVGPISEEIGFLE 336

Query: 249 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ 308
            L +L +  NNF G  P  I + L  LTV  +  N + G +P+  G +  L+ L   +N 
Sbjct: 337 SLEVLTLHSNNFTGEFPQSITN-LRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNL 395

Query: 309 LTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSK 368
           LTG IP  ++  C  L+ L LS+N + G +  R F   NL ++ +  NHF GEIP  +  
Sbjct: 396 LTGPIPSSIS-NCTGLKLLDLSHNQMTGEI-PRGFGRMNLTFISIGRNHFTGEIPDDIFN 453

Query: 369 CSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDN 428
           CS+L+ L +++N+L+G +   +G L  LR + +  N + GPIP E   L+ L IL +  N
Sbjct: 454 CSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSN 513

Query: 429 NISGSLP-SCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVD 487
             +G +P    +   ++ + +  N L G + E   F+   L +LDLS N  +G IP    
Sbjct: 514 GFTGRIPREMSNLTLLQGLRMYSNDLEGPIPE-EMFDMKLLSVLDLSNNKFSGQIPALFS 572

Query: 488 GLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIP----SCFDNTTLHERY 543
            L  L+YL L  N   G +P  L  L+ L   D+S+N L G IP    +   N  L+  +
Sbjct: 573 KLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNF 632

Query: 544 NNGSSLQPFETSFVIMGGMDVDPKK-QILESFDFTTKSITYTYQGRVPSLLSG------L 596
           +N           ++ G +  +  K ++++  D +       + G +P  L        L
Sbjct: 633 SNN----------LLTGTIPKELGKLEMVQEIDLSNN----LFSGSIPRSLQACKNVFTL 678

Query: 597 DLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKI 655
           D S N L GHIP ++   +  I +LNLS N+ +G IP +F N+ ++ SLDLS N L+ +I
Sbjct: 679 DFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEI 738

Query: 656 PYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTMP 715
           P  L  L+TL    +A NNL G +PE    F   N S   GN  LCG   P  + P T+ 
Sbjct: 739 PESLANLSTLKHLKLASNNLKGHVPESGV-FKNINASDLMGNTDLCGSKKP--LKPCTIK 795

Query: 716 EAS 718
           + S
Sbjct: 796 QKS 798

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  244 bits (622), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 227/753 (30%), Positives = 363/753 (48%), Gaps = 104/753 (13%)

Query: 21  LKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCP-----LVHL 75
           LK L + D    LN +  +  G ++ ++Q L+L++  ++        GL P     LV L
Sbjct: 146 LKSLKLGDNE--LNGTIPETFG-NLVNLQMLALASCRLT--------GLIPSRFGRLVQL 194

Query: 76  QELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHF- 134
           Q L + DN+L G +P  + N TSL +   + N+L GS+ +  L  L +++ L L DN F 
Sbjct: 195 QTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAE-LNRLKNLQTLNLGDNSFS 253

Query: 135 -QIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPK 193
            +IP  L  L +   L +     N++   I +     T    LQ+L LSS    G+   +
Sbjct: 254 GEIPSQLGDLVSIQYLNLI---GNQLQGLIPKR---LTELANLQTLDLSSNNLTGVIHEE 307

Query: 194 FLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLL 253
           F +  + LE++ L+  +++   P  +  NNT L+QL L    L G     I + + L+LL
Sbjct: 308 F-WRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLL 366

Query: 254 DVSKNNFQGHIP------LEIGDI-----------------LSRLTVFNISMNALDGSIP 290
           D+S N   G IP      +E+ ++                 L+ L  F +  N L+G +P
Sbjct: 367 DLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVP 426

Query: 291 SSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIW 350
              G +  L+ + L  N+ +GE+P  +   C  L+ +    N L G + S    L +L  
Sbjct: 427 KEIGFLGKLEIMYLYENRFSGEMPVEIG-NCTRLQEIDWYGNRLSGEIPSSIGRLKDLTR 485

Query: 351 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPI 410
           L L  N  VG IP SL  C  +  + L++N LSG IP   G LT L   ++  N ++G +
Sbjct: 486 LHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNL 545

Query: 411 PLEFCQLRILQILDISDNNISGSL-PSC-------YDFV----------------CIEQV 446
           P     L+ L  ++ S N  +GS+ P C       +D                   ++++
Sbjct: 546 PDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRL 605

Query: 447 HLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEV 506
            L KN   G++   TF     L +LD+S N L+G IP  +    +L+++ L +N L G +
Sbjct: 606 RLGKNQFTGRIPR-TFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVI 664

Query: 507 PIQLCRLNQLQLLDLSNNNLHGHIPS-CFDNTTLHERYNNGSSLQ---PFETSFVIMGGM 562
           P  L +L  L  L LS+N   G +P+  F  T +   + +G+SL    P E     +G +
Sbjct: 665 PTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQE-----IGNL 719

Query: 563 DVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLD------LSCNRLIGHIPPQIGNLTK 616
                 Q L + +     ++    G +PS +  L       LS N L G IP +IG L  
Sbjct: 720 ------QALNALNLEENQLS----GPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQD 769

Query: 617 IQT-LNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNL 675
           +Q+ L+LS+NN  G IPST S L  +ESLDLS+N+L  ++P Q+ ++ +L   +++YNNL
Sbjct: 770 LQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNL 829

Query: 676 SGKIPERAAQFATFNESSYEGNPFLCGPPLPIC 708
            GK+ +   QF+ +   ++ GN  LCG PL  C
Sbjct: 830 EGKLKK---QFSRWQADAFVGNAGLCGSPLSHC 859

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  235 bits (600), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 240/790 (30%), Positives = 344/790 (43%), Gaps = 181/790 (22%)

Query: 72  LVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSD 131
           L+HL    ++ N+L G +P  L+N+TSL  L + SNQL G I S  L  L +I  L + D
Sbjct: 97  LIHLD---LSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIPSQ-LGSLVNIRSLRIGD 152

Query: 132 NHF--QIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPN-------FQLQSLLLS 182
           N     IP +L  L N   L              + S  LT P         ++QSL+L 
Sbjct: 153 NELVGDIPETLGNLVNLQMLA-------------LASCRLTGPIPSQLGRLVRVQSLILQ 199

Query: 183 SGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWL--LENNTKLRQLSLVNDSLVGPF 240
             Y +G   P  L N  DL     +   +N   P  L  LEN   L  L+L N+SL G  
Sbjct: 200 DNYLEG-PIPAELGNCSDLTVFTAAENMLNGTIPAELGRLEN---LEILNLANNSLTGEI 255

Query: 241 RLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQ 300
              +    QL+ L +  N  QG IP  + D L  L   ++S N L G IP  F NM+ L 
Sbjct: 256 PSQLGEMSQLQYLSLMANQLQGLIPKSLAD-LGNLQTLDLSANNLTGEIPEEFWNMSQLL 314

Query: 301 FLDLSNN-------------------------QLTGEIPEHLAMGCVSLRSLALSNNNLE 335
            L L+NN                         QL+GEIP  L+  C SL+ L LSNN+L 
Sbjct: 315 DLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSK-CQSLKQLDLSNNSLA 373

Query: 336 GHMFSRNF------------------------NLTNLIWLQLEGNHFVGEIPQSLSKCSS 371
           G +    F                        NLTNL WL L  N+  G++P+ +S    
Sbjct: 374 GSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRK 433

Query: 372 LQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLR------------- 418
           L+ LFL  N  SG+IP+ +GN T L+ I M  NH EG IP    +L+             
Sbjct: 434 LEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELV 493

Query: 419 -----------ILQILDISDNNISGSLPSCYDFV-CIEQVHLSKNMLHGQLKEGTFFNCL 466
                       L ILD++DN +SGS+PS + F+  +EQ+ L  N L G L + +  +  
Sbjct: 494 GGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPD-SLISLR 552

Query: 467 TLMILDLSYNHLNGN-----------------------IPDRVDGLSQLSYLILAHNNLE 503
            L  ++LS+N LNG                        IP  +     L  L L  N L 
Sbjct: 553 NLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLT 612

Query: 504 GEVPIQLCRLNQLQLLDLSNNNLHGHIP--SCFDNTTLHERYNN---GSSLQPFETSFVI 558
           G++P  L ++ +L LLD+S+N L G IP          H   NN      + P+      
Sbjct: 613 GKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQ 672

Query: 559 MGGMDVDPKKQILESFDFTTKSITY---------TYQGRVP------SLLSGLDLSCNRL 603
           +G + +    Q +ES      + T          +  G +P        L+ L+L  N+ 
Sbjct: 673 LGELKLS-SNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQF 731

Query: 604 IGHIPPQIGNLTKI-------------------------QTLNLSHNNLAGPIPSTFSNL 638
            G +P  +G L+K+                           L+LS+NN  G IPST   L
Sbjct: 732 SGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTL 791

Query: 639 RNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNP 698
             +E+LDLS+N+L+ ++P  + ++ +L   +V++NNL GK+ +   QF+ +   S+ GN 
Sbjct: 792 SKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLKK---QFSRWPADSFLGNT 848

Query: 699 FLCGPPLPIC 708
            LCG PL  C
Sbjct: 849 GLCGSPLSRC 858

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  229 bits (585), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 218/739 (29%), Positives = 333/739 (45%), Gaps = 77/739 (10%)

Query: 74  HLQELHMADNDLR--GSLPWCLANMTSLRILDVSSNQLIGSISSSP--LIHLTSIEDL-- 127
           +LQ L ++ N +     + +  +  ++L  +++S+N+L+G +  +P  L  LT++ DL  
Sbjct: 126 YLQVLDLSSNSISDYSMVDYVFSKCSNLVSVNISNNKLVGKLGFAPSSLQSLTTV-DLSY 184

Query: 128 -ILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYR 186
            ILSD   +IP S    F  S LK  D  +N ++ +  +       N    SL  S    
Sbjct: 185 NILSD---KIPESFISDFPAS-LKYLDLTHNNLSGDFSDLSFGICGNLTFFSL--SQNNL 238

Query: 187 DGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHS 246
            G  FP  L N   LE + +S   +  + PN                    G +     +
Sbjct: 239 SGDKFPITLPNCKFLETLNISRNNLAGKIPN--------------------GEYWGSFQN 278

Query: 247 HKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSN 306
            KQL L   + N   G IP E+  +   L + ++S N   G +PS F    +LQ L+L N
Sbjct: 279 LKQLSL---AHNRLSGEIPPELSLLCKTLVILDLSGNTFSGELPSQFTACVWLQNLNLGN 335

Query: 307 NQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ-- 364
           N L+G+    +      +  L ++ NN+ G +     N +NL  L L  N F G +P   
Sbjct: 336 NYLSGDFLNTVVSKITGITYLYVAYNNISGSVPISLTNCSNLRVLDLSSNGFTGNVPSGF 395

Query: 365 -SLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQIL 423
            SL     L+ + ++NN LSG +P  LG    L+ I +  N + GPIP E   L  L  L
Sbjct: 396 CSLQSSPVLEKILIANNYLSGTVPMELGKCKSLKTIDLSFNELTGPIPKEIWMLPNLSDL 455

Query: 424 DISDNNISGSLPS--CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGN 481
            +  NN++G++P   C     +E + L+ N+L G + E +   C  ++ + LS N L G 
Sbjct: 456 VMWANNLTGTIPEGVCVKGGNLETLILNNNLLTGSIPE-SISRCTNMIWISLSSNRLTGK 514

Query: 482 IPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE 541
           IP  +  LS+L+ L L +N+L G VP QL     L  LDL++NNL G +P         E
Sbjct: 515 IPSGIGNLSKLAILQLGNNSLSGNVPRQLGNCKSLIWLDLNSNNLTGDLPG--------E 566

Query: 542 RYNNGSSLQPFETS---FVIM---GGMDVDPKKQILESFDFTTKSI-----------TYT 584
             +    + P   S   F  +   GG D      ++E      + +           T  
Sbjct: 567 LASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAGGLVEFEGIRAERLERLPMVHSCPATRI 626

Query: 585 YQGRVPSLLSG------LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNL 638
           Y G      S        D+S N + G IPP  GN+  +Q LNL HN + G IP +F  L
Sbjct: 627 YSGMTMYTFSANGSMIYFDISYNAVSGFIPPGYGNMGYLQVLNLGHNRITGTIPDSFGGL 686

Query: 639 RNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNP 698
           + I  LDLS+N L   +P  L  L+ L+   V+ NNL+G IP    Q  TF  S Y  N 
Sbjct: 687 KAIGVLDLSHNNLQGYLPGSLGSLSFLSDLDVSNNNLTGPIP-FGGQLTTFPVSRYANNS 745

Query: 699 FLCGPPLPICISPTTMPEASPSNEGDNNLIDMDIFFITFT-TSYVIVIFGIVAVLYVNAR 757
            LCG PL  C S    P  S  +     +    I  I F+   +V+++  +  V  V  +
Sbjct: 746 GLCGVPLRPCGSAPRRPITSRIHAKKQTVATAVIAGIAFSFMCFVMLVMALYRVRKVQKK 805

Query: 758 WRRRWFYLVEMWTT-SCYY 775
            ++R  Y+  + T+ SC +
Sbjct: 806 EQKREKYIESLPTSGSCSW 824

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score =  226 bits (575), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 221/730 (30%), Positives = 327/730 (44%), Gaps = 72/730 (9%)

Query: 75  LQELHMADNDLRGS--LPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDN 132
           L+ L ++ N L  S  + +  +   +L  ++ S N+L G + SSP      I  + LS+N
Sbjct: 126 LEVLDLSSNSLTDSSIVDYVFSTCLNLVSVNFSHNKLAGKLKSSPSASNKRITTVDLSNN 185

Query: 133 HF--QIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGIT 190
            F  +IP +    F +S LK  D   N +  +          N  + S  LS     G  
Sbjct: 186 RFSDEIPETFIADFPNS-LKHLDLSGNNVTGDFSRLSFGLCENLTVFS--LSQNSISGDR 242

Query: 191 FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL 250
           FP  L N   LE + LS   +  + P                 D   G F       + L
Sbjct: 243 FPVSLSNCKLLETLNLSRNSLIGKIP----------------GDDYWGNF-------QNL 279

Query: 251 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLT 310
           R L ++ N + G IP E+  +   L V ++S N+L G +P SF +   LQ L+L NN+L+
Sbjct: 280 RQLSLAHNLYSGEIPPELSLLCRTLEVLDLSGNSLTGQLPQSFTSCGSLQSLNLGNNKLS 339

Query: 311 GEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ---SLS 367
           G+    +      + +L L  NN+ G +     N +NL  L L  N F GE+P    SL 
Sbjct: 340 GDFLSTVVSKLSRITNLYLPFNNISGSVPISLTNCSNLRVLDLSSNEFTGEVPSGFCSLQ 399

Query: 368 KCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISD 427
             S L+ L ++NN LSG +P  LG    L+ I +  N + G IP E   L  L  L +  
Sbjct: 400 SSSVLEKLLIANNYLSGTVPVELGKCKSLKTIDLSFNALTGLIPKEIWTLPKLSDLVMWA 459

Query: 428 NNISGSLPS--CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDR 485
           NN++G +P   C D   +E + L+ N+L G L E +   C  ++ + LS N L G IP  
Sbjct: 460 NNLTGGIPESICVDGGNLETLILNNNLLTGSLPE-SISKCTNMLWISLSSNLLTGEIPVG 518

Query: 486 VDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNN 545
           +  L +L+ L L +N+L G +P +L     L  LDL++NNL G++P         E  + 
Sbjct: 519 IGKLEKLAILQLGNNSLTGNIPSELGNCKNLIWLDLNSNNLTGNLPG--------ELASQ 570

Query: 546 GSSLQPFETS---FVIM---GGMDVDPKKQILESFDFTTKSI-----------TYTYQGR 588
              + P   S   F  +   GG D      ++E      + +           T  Y G 
Sbjct: 571 AGLVMPGSVSGKQFAFVRNEGGTDCRGAGGLVEFEGIRAERLEHFPMVHSCPKTRIYSGM 630

Query: 589 VPSLLSG------LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIE 642
              + S       LDLS N + G IP   G +  +Q LNL HN L G IP +F  L+ I 
Sbjct: 631 TMYMFSSNGSMIYLDLSYNAVSGSIPLGYGAMGYLQVLNLGHNLLTGTIPDSFGGLKAIG 690

Query: 643 SLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCG 702
            LDLS+N L   +P  L  L+ L+   V+ NNL+G IP    Q  TF  + Y  N  LCG
Sbjct: 691 VLDLSHNDLQGFLPGSLGGLSFLSDLDVSNNNLTGPIP-FGGQLTTFPLTRYANNSGLCG 749

Query: 703 PPLPICISPT--TMPEASPSNEGDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRR 760
            PLP C S +  T   A P  +     +   I F +F    V++I  +     V  + ++
Sbjct: 750 VPLPPCSSGSRPTRSHAHPKKQSIATGMSAGIVF-SFMC-IVMLIMALYRARKVQKKEKQ 807

Query: 761 RWFYLVEMWT 770
           R  Y+  + T
Sbjct: 808 REKYIESLPT 817

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  219 bits (558), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 214/721 (29%), Positives = 325/721 (45%), Gaps = 94/721 (13%)

Query: 75  LQELHMADNDLRGS--LPWCLA-NMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSD 131
           LQ L ++ N++ G    PW  +     L    +  N+L GSI   P +   ++  L LS 
Sbjct: 187 LQVLDLSYNNISGFNLFPWVSSMGFVELEFFSLKGNKLAGSI---PELDFKNLSYLDLSA 243

Query: 132 NHFQIPISLEPLFNH-SRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGIT 190
           N+F    ++ P F   S L+  D  +N+   +I  S S      +L  L L++    G+ 
Sbjct: 244 NNFS---TVFPSFKDCSNLQHLDLSSNKFYGDIGSSLSSCG---KLSFLNLTNNQFVGLV 297

Query: 191 FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL 250
            PK       L+Y+ L        +PN L +    + +L L  ++  G     +     L
Sbjct: 298 -PKL--PSESLQYLYLRGNDFQGVYPNQLADLCKTVVELDLSYNNFSGMVPESLGECSSL 354

Query: 251 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLT 310
            L+D+S NNF G +P++    LS +    +S N   G +P SF N+  L+ LD+S+N LT
Sbjct: 355 ELVDISYNNFSGKLPVDTLSKLSNIKTMVLSFNKFVGGLPDSFSNLLKLETLDMSSNNLT 414

Query: 311 GEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCS 370
           G IP  +                           + NL  L L+ N F G IP SLS CS
Sbjct: 415 GVIPSGICKD-----------------------PMNNLKVLYLQNNLFKGPIPDSLSNCS 451

Query: 371 SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNI 430
            L  L LS N L+G IP  LG+L+ L+ +I+  N + G IP E   L+ L+ L +  N++
Sbjct: 452 QLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDL 511

Query: 431 SGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLS 490
           +G +P+                        +  NC  L  + LS N L+G IP  +  LS
Sbjct: 512 TGPIPA------------------------SLSNCTKLNWISLSNNQLSGEIPASLGRLS 547

Query: 491 QLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTT--------LHER 542
            L+ L L +N++ G +P +L     L  LDL+ N L+G IP      +          +R
Sbjct: 548 NLAILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGKR 607

Query: 543 Y----NNGSSLQPFETSFVIMGGMDVDPKKQILE----SFDFTTKSITYTYQGRVPSLLS 594
           Y    N+GS       + +  GG+  +   +I      +F    + IT        S++ 
Sbjct: 608 YVYIKNDGSKECHGAGNLLEFGGIRQEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIF 667

Query: 595 GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK 654
            LDLS N+L G IP ++G +  +  LNL HN+L+G IP     L+N+  LDLSYN+ +  
Sbjct: 668 -LDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGT 726

Query: 655 IPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTM 714
           IP  L  L  L    ++ NNLSG IPE +A F TF +  +  N  LCG PLPI  S    
Sbjct: 727 IPNSLTSLTLLGEIDLSNNNLSGMIPE-SAPFDTFPDYRFANNS-LCGYPLPIPCSSGPK 784

Query: 715 PEASPSNEGDNNL------IDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEM 768
            +A+   +           + M + F  F       IFG++ V     + RR+    +E 
Sbjct: 785 SDANQHQKSHRRQASLAGSVAMGLLFSLF------CIFGLIIVAIETKKRRRKKEAALEA 838

Query: 769 W 769
           +
Sbjct: 839 Y 839

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  218 bits (555), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 213/721 (29%), Positives = 325/721 (45%), Gaps = 94/721 (13%)

Query: 75  LQELHMADNDLRGS--LPWCLA-NMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSD 131
           LQ L ++ N++ G    PW  +     L    +  N+L GSI   P +   ++  L LS 
Sbjct: 187 LQVLDLSYNNISGFNLFPWVSSMGFVELEFFSIKGNKLAGSI---PELDFKNLSYLDLSA 243

Query: 132 NHFQIPISLEPLFNH-SRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGIT 190
           N+F    ++ P F   S L+  D  +N+   +I  S S      +L  L L++    G+ 
Sbjct: 244 NNFS---TVFPSFKDCSNLQHLDLSSNKFYGDIGSSLSSCG---KLSFLNLTNNQFVGLV 297

Query: 191 FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL 250
            PK       L+Y+ L        +PN L +    + +L L  ++  G     +     L
Sbjct: 298 -PKL--PSESLQYLYLRGNDFQGVYPNQLADLCKTVVELDLSYNNFSGMVPESLGECSSL 354

Query: 251 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLT 310
            L+D+S NNF G +P++    LS +    +S N   G +P SF N+  L+ LD+S+N LT
Sbjct: 355 ELVDISNNNFSGKLPVDTLLKLSNIKTMVLSFNKFVGGLPDSFSNLPKLETLDMSSNNLT 414

Query: 311 GEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCS 370
           G IP  +                           + NL  L L+ N F G IP SLS CS
Sbjct: 415 GIIPSGICKD-----------------------PMNNLKVLYLQNNLFKGPIPDSLSNCS 451

Query: 371 SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNI 430
            L  L LS N L+G IP  LG+L+ L+ +I+  N + G IP E   L+ L+ L +  N++
Sbjct: 452 QLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDL 511

Query: 431 SGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLS 490
           +G +P+                        +  NC  L  + LS N L+G IP  +  LS
Sbjct: 512 TGPIPA------------------------SLSNCTKLNWISLSNNQLSGEIPASLGRLS 547

Query: 491 QLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTT--------LHER 542
            L+ L L +N++ G +P +L     L  LDL+ N L+G IP      +          +R
Sbjct: 548 NLAILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGKR 607

Query: 543 Y----NNGSSLQPFETSFVIMGGMDVDPKKQILE----SFDFTTKSITYTYQGRVPSLLS 594
           Y    N+GS       + +  GG+  +   +I      +F    + IT        S++ 
Sbjct: 608 YVYIKNDGSKECHGAGNLLEFGGIRQEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIF 667

Query: 595 GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK 654
            LDLS N+L G IP ++G +  +  LNL HN+L+G IP     L+N+  LDLSYN+ +  
Sbjct: 668 -LDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGT 726

Query: 655 IPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTM 714
           IP  L  L  L    ++ NNLSG IPE +A F TF +  +  N  LCG PLP+  S    
Sbjct: 727 IPNSLTSLTLLGEIDLSNNNLSGMIPE-SAPFDTFPDYRFANNS-LCGYPLPLPCSSGPK 784

Query: 715 PEASPSNEGDNNL------IDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEM 768
            +A+   +           + M + F  F       IFG++ V     + RR+    +E 
Sbjct: 785 SDANQHQKSHRRQASLAGSVAMGLLFSLF------CIFGLIIVAIETKKRRRKKEAALEA 838

Query: 769 W 769
           +
Sbjct: 839 Y 839

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  217 bits (553), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 214/756 (28%), Positives = 341/756 (45%), Gaps = 108/756 (14%)

Query: 48  IQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSN 107
           ++ LSL ++S +    T+   L     L  + +  N L G LP  + N+TSL + +V+ N
Sbjct: 94  LRKLSLRSNSFNG---TIPTSLAYCTRLLSVFLQYNSLSGKLPPAMRNLTSLEVFNVAGN 150

Query: 108 QLIGSISSSPLIHLTSIEDLILSDNHF--QIPISLEPLFNHSRLKIFDAENNEINAEIIE 165
           +L G I   P+   +S++ L +S N F  QIP  L    N ++L++ +   N++  EI  
Sbjct: 151 RLSGEI---PVGLPSSLQFLDISSNTFSGQIPSGLA---NLTQLQLLNLSYNQLTGEI-- 202

Query: 166 SHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTK 225
                                     P  L N   L+Y+ L    +    P+  + N + 
Sbjct: 203 --------------------------PASLGNLQSLQYLWLDFNLLQGTLPS-AISNCSS 235

Query: 226 LRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNAL 285
           L  LS   + + G       +  +L +L +S NNF G +P  +    + LT+  +  NA 
Sbjct: 236 LVHLSASENEIGGVIPAAYGALPKLEVLSLSNNNFSGTVPFSL-FCNTSLTIVQLGFNAF 294

Query: 286 DGSI-PSSFGN-MNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF 343
              + P +  N    LQ LDL  N+++G  P  L    +SL++L +S N   G +     
Sbjct: 295 SDIVRPETTANCRTGLQVLDLQENRISGRFPLWLT-NILSLKNLDVSGNLFSGEIPPDIG 353

Query: 344 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 403
           NL  L  L+L  N   GEIP  + +C SL  L    NSL G+IP +LG +  L+ + + +
Sbjct: 354 NLKRLEELKLANNSLTGEIPVEIKQCGSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGR 413

Query: 404 NHIEGPIPLEFCQLRILQILDISDNNISGSLP-SCYDFVCIEQVHLSKNMLHGQLKEGTF 462
           N   G +P     L+ L+ L++ +NN++GS P        + ++ LS N   G +   + 
Sbjct: 414 NSFSGYVPSSMVNLQQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPV-SI 472

Query: 463 FNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLS 522
            N   L  L+LS N  +G IP  V  L +L+ L L+  N+ GEVP++L  L  +Q++ L 
Sbjct: 473 SNLSNLSFLNLSGNGFSGEIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQ 532

Query: 523 NNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSIT 582
            NN  G +P  F ++ +  RY N SS      SF            +I ++F F    ++
Sbjct: 533 GNNFSGVVPEGF-SSLVSLRYVNLSS-----NSF----------SGEIPQTFGFLRLLVS 576

Query: 583 YTY-----QGRVP------SLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLS-------- 623
            +       G +P      S L  L+L  NRL+GHIP  +  L +++ L+L         
Sbjct: 577 LSLSDNHISGSIPPEIGNCSALEVLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSGEI 636

Query: 624 ----------------HNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNT-LA 666
                           HN+L+G IP +FS L N+  +DLS N L+ +IP  L  +++ L 
Sbjct: 637 PPEISQSSSLNSLSLDHNHLSGVIPGSFSGLSNLTKMDLSVNNLTGEIPASLALISSNLV 696

Query: 667 VFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL-PICISPTTMPEASPSNEGDN 725
            F+V+ NNL G+IP         N S + GN  LCG PL   C S T         EG  
Sbjct: 697 YFNVSSNNLKGEIPASLGSRIN-NTSEFSGNTELCGKPLNRRCESSTA--------EGKK 747

Query: 726 NLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRR 761
               M +  +       ++       +Y   +WR++
Sbjct: 748 KKRKMILMIVMAAIGAFLLSLFCCFYVYTLLKWRKK 783

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  215 bits (548), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 207/729 (28%), Positives = 331/729 (45%), Gaps = 109/729 (14%)

Query: 64  TLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTS 123
           +L + L     LQ+L ++  +L G+LP  L +   L++LD+SSN L+G I  S L  L +
Sbjct: 96  SLPKNLPAFRSLQKLTISGANLTGTLPESLGDCLGLKVLDLSSNGLVGDIPWS-LSKLRN 154

Query: 124 IEDLILSDNHF--QIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLL 181
           +E LIL+ N    +IP  +        L +FD                        +LL 
Sbjct: 155 LETLILNSNQLTGKIPPDISKCSKLKSLILFD------------------------NLLT 190

Query: 182 SSGYRDGITFPKFLYNQHDLEYVRLSHIK-MNEEFPNWLLENNTKLRQLSLVNDSLVGPF 240
            S        P  L     LE +R+   K ++ + P+ +  + + L  L L   S+ G  
Sbjct: 191 GS-------IPTELGKLSGLEVIRIGGNKEISGQIPSEI-GDCSNLTVLGLAETSVSGNL 242

Query: 241 RLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQ 300
              +   K+L  L +      G IP ++G+    + +F +  N+L GSIP   G +  L+
Sbjct: 243 PSSLGKLKKLETLSIYTTMISGEIPSDLGNCSELVDLF-LYENSLSGSIPREIGQLTKLE 301

Query: 301 FLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVG 360
            L L  N L G IPE +   C +L+ + LS N L G + S    L+ L    +  N F G
Sbjct: 302 QLFLWQNSLVGGIPEEIG-NCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFSG 360

Query: 361 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 420
            IP ++S CSSL  L L  N +SG IP  LG LT L       N +EG IP        L
Sbjct: 361 SIPTTISNCSSLVQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDL 420

Query: 421 QILDISDNNISGSLPS-CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN 479
           Q LD+S N+++G++PS  +    + ++ L  N L G + +    NC +L+ L L +N + 
Sbjct: 421 QALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQ-EIGNCSSLVRLRLGFNRIT 479

Query: 480 GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTL 539
           G IP  +  L ++++L  + N L G+VP ++   ++LQ++DLSNN+L G +P        
Sbjct: 480 GEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLP-------- 531

Query: 540 HERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLS 599
               N  SSL   +        +DV   +                + G++P+ L  L +S
Sbjct: 532 ----NPVSSLSGLQV-------LDVSANQ----------------FSGKIPASLGRL-VS 563

Query: 600 CNRLI-------GHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIE-SLDLSYNKL 651
            N+LI       G IP  +G  + +Q L+L  N L+G IPS   ++ N+E +L+LS N+L
Sbjct: 564 LNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENLEIALNLSSNRL 623

Query: 652 SWKIPYQLVELNTLAV-----------------------FSVAYNNLSGKIPERAAQFAT 688
           + KIP ++  LN L++                        +++YN+ SG +P+    F  
Sbjct: 624 TGKIPSKIASLNKLSILDLSHNMLEGDLAPLANIENLVSLNISYNSFSGYLPDNKL-FRQ 682

Query: 689 FNESSYEGNPFLCGPPLPICISPTTMPEASPSNEGDNNLIDMDIFFITFTTSYVIVIFGI 748
            +    EGN  LC      C   T        ++GD +        +    +  +V+  +
Sbjct: 683 LSPQDLEGNKKLCSSTQDSCFL-TYRKGNGLGDDGDASRTRKLRLTLALLITLTVVLMIL 741

Query: 749 VAVLYVNAR 757
            AV  + AR
Sbjct: 742 GAVAVIRAR 750

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  215 bits (548), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 198/652 (30%), Positives = 291/652 (44%), Gaps = 83/652 (12%)

Query: 81  ADNDLRGSLPW-CLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPIS 139
           + + L G+LP    +  ++L  + +S N   G + +   +    ++ L LS N+   PIS
Sbjct: 135 SSSGLIGTLPENFFSKYSNLISITLSYNNFTGKLPNDLFLSSKKLQTLDLSYNNITGPIS 194

Query: 140 --LEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYN 197
               PL +   +   D   N I+  I +S    T    L+SL LS    DG   PK    
Sbjct: 195 GLTIPLSSCVSMTYLDFSGNSISGYISDSLINCT---NLKSLNLSYNNFDG-QIPKSFGE 250

Query: 198 QHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSK 257
              L+ + LSH ++    P  + +    L+ L L  ++  G     + S   L+ LD+S 
Sbjct: 251 LKLLQSLDLSHNRLTGWIPPEIGDTCRSLQNLRLSYNNFTGVIPESLSSCSWLQSLDLSN 310

Query: 258 NNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHL 317
           NN  G  P  I      L +  +S N + G  P+S      L+  D S+N+ +G IP  L
Sbjct: 311 NNISGPFPNTILRSFGSLQILLLSNNLISGDFPTSISACKSLRIADFSSNRFSGVIPPDL 370

Query: 318 AMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFL 377
             G  SL  L L +                        N   GEIP ++S+CS L+ + L
Sbjct: 371 CPGAASLEELRLPD------------------------NLVTGEIPPAISQCSELRTIDL 406

Query: 378 SNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSC 437
           S N L+G IP  +GNL  L   I   N+I G IP E  +L+ L+ L +++N ++G +P  
Sbjct: 407 SLNYLNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEIPP- 465

Query: 438 YDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLIL 497
                                   FFNC  +  +  + N L G +P     LS+L+ L L
Sbjct: 466 -----------------------EFFNCSNIEWVSFTSNRLTGEVPKDFGILSRLAVLQL 502

Query: 498 AHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIP-------------SCFDNTTLHERYN 544
            +NN  GE+P +L +   L  LDL+ N+L G IP                   T+    N
Sbjct: 503 GNNNFTGEIPPELGKCTTLVWLDLNTNHLTGEIPPRLGRQPGSKALSGLLSGNTMAFVRN 562

Query: 545 NGSSLQPFETSFVIMGGMDVDPKKQI--LESFDFTTKSITYTYQGRVPSLLSG------L 596
            G+S +      V   G+  +   QI  L+S DF     T  Y G + SL +       L
Sbjct: 563 VGNSCKGV-GGLVEFSGIRPERLLQIPSLKSCDF-----TRMYSGPILSLFTRYQTIEYL 616

Query: 597 DLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIP 656
           DLS N+L G IP +IG +  +Q L LSHN L+G IP T   L+N+   D S N+L  +IP
Sbjct: 617 DLSYNQLRGKIPDEIGEMIALQVLELSHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQIP 676

Query: 657 YQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPIC 708
                L+ L    ++ N L+G IP+R  Q +T   + Y  NP LCG PLP C
Sbjct: 677 ESFSNLSFLVQIDLSNNELTGPIPQR-GQLSTLPATQYANNPGLCGVPLPEC 727

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	788
255581263	912	serine-threonine protein kinase, plant-t	0.940	0.812	0.506	0.0
224142481	781	predicted protein [Populus trichocarpa]	0.947	0.956	0.468	1e-178
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.937	0.504	0.453	1e-164
224134891	953	predicted protein [Populus trichocarpa]	0.965	0.798	0.442	1e-164
224123984	1016	predicted protein [Populus trichocarpa]	0.946	0.734	0.442	1e-163
224073436	1014	predicted protein [Populus trichocarpa]	0.960	0.746	0.435	1e-158
224073382	1309	predicted protein [Populus trichocarpa]	0.892	0.537	0.454	1e-157
224124490	981	predicted protein [Populus trichocarpa]	0.967	0.776	0.422	1e-155
224073422	969	predicted protein [Populus trichocarpa]	0.946	0.769	0.434	1e-154
224098008	1097	predicted protein [Populus trichocarpa]	0.923	0.663	0.434	1e-153

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/766 (50%), Positives = 515/766 (67%), Gaps = 25/766 (3%)

Query: 10  LSGQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGL 69
           +  Q  P+F++L+ELY+D  +I L  SFLQ +G  M S++ LSLS   ++     + QGL
Sbjct: 168 IQAQDLPNFENLEELYLD--KIELENSFLQTVG-VMTSLKVLSLSGCGLTGALPNV-QGL 223

Query: 70  CPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLIL 129
           C L+HL+ L ++ N+  G LPWCL+N+TSL++LD+SSNQ +G IS+SPL  L S+ DL +
Sbjct: 224 CELIHLRVLDVSSNEFHGILPWCLSNLTSLQLLDLSSNQFVGDISNSPLKILKSLVDLDV 283

Query: 130 SDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGI 189
           S+NHFQ+P SL P FNHS LK    +NN I  E  E HS   P FQL S++ S GY    
Sbjct: 284 SNNHFQVPFSLGPFFNHSNLKHIRGQNNAIYLEA-ELHS--APRFQLISIIFS-GYGICG 339

Query: 190 TFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQ 249
           TFP FLY+Q++L++V LSH+ +  EFPNWLL NNT+L  L LVN+SL G  +LP+H H  
Sbjct: 340 TFPNFLYHQNNLQFVDLSHLSLKGEFPNWLLTNNTRLEILDLVNNSLSGHLQLPLHPHVN 399

Query: 250 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQL 309
           L  LD+S N+   HIPLEIG  L +L + N+S N  DGSIPSSFGNMN L+ LDLSNNQL
Sbjct: 400 LLALDISNNHVHDHIPLEIGTFLPKLELLNMSSNGFDGSIPSSFGNMNSLRILDLSNNQL 459

Query: 310 TGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKC 369
           +G IPEHLA GC SL +L LSNN+L+G MFS+ FNLTNL WL+L+ NHF G IP+SLSK 
Sbjct: 460 SGSIPEHLATGCFSLNTLILSNNSLQGQMFSKQFNLTNLWWLELDKNHFSGRIPKSLSK- 518

Query: 370 SSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNN 429
           S+L  + LS+N LSG IP W+GNL+ L+++I+  N ++GPIP+EFCQL  L++LD+++N+
Sbjct: 519 SALSIMDLSDNHLSGMIPGWIGNLSYLQNLILSNNRLKGPIPVEFCQLHYLEVLDLANNS 578

Query: 430 ISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGL 489
           +SG LPSC     I  VHLS+NM+ G      F     L+ LDLS N + G IP  + G+
Sbjct: 579 VSGILPSCLSPSSIIHVHLSQNMIEGPWTNA-FSGSHFLVTLDLSSNRITGRIPTLIGGI 637

Query: 490 SQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSL 549
           + L  L L  N  +GE+P Q+C L QL L+ L++NNL G IPSC        + +   SL
Sbjct: 638 NALRILNLKSNRFDGEIPAQICGLYQLSLIVLADNNLSGSIPSCL-------QLDQSDSL 690

Query: 550 QPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPP 609
            P              P + +     FTTK  +Y+YQG++ S +SG+D SCN+L G IPP
Sbjct: 691 APDVPPVPNPLNPYYLPVRPMY----FTTKRRSYSYQGKILSYISGIDFSCNKLTGEIPP 746

Query: 610 QIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFS 669
           ++GN + I +LNLS+N   GPIPSTFSNL+ IESLDLSYN L+  IP QL+EL  L+ FS
Sbjct: 747 EMGNHSAIYSLNLSYNRFTGPIPSTFSNLKQIESLDLSYNNLNGDIPSQLLELKFLSYFS 806

Query: 670 VAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICIS---PTTMPEASPSNEGDNN 726
           VA+NNL GK P+R  QFATF  SSYEGNP LCG PLP   +    ++ P AS  +E ++N
Sbjct: 807 VAHNNLFGKTPKRTGQFATFEVSSYEGNPNLCGLPLPKSCTEREASSAPRASAMDE-ESN 865

Query: 727 LIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTS 772
            +DM+ F+ +F  SY  VI G+  VLY+N +WRR WF  V++  +S
Sbjct: 866 FLDMNTFYGSFIVSYTFVIIGMFLVLYINPQWRRAWFDFVDICISS 911

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa]

 Score =  632 bits (1631), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 374/799 (46%), Positives = 507/799 (63%), Gaps = 52/799 (6%)

Query: 5   EVNGVLSGQGFPHFKSLKELYMDDARI-ALNTSFLQIIGESMPSIQYLSLSNSSVSNNSR 63
           E+    +  GF     L +L + +     +N S L  + E + S+++L+L N+ +     
Sbjct: 11  EIQNFATSTGFERSLRLNKLEILELSFNKINDSTLSFL-EGLSSLKHLNLDNNQLKG--- 66

Query: 64  TLD-QGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLT 122
           ++D +GLC L  LQEL ++ NDL G LP CL N+ +L++LD+S N   G+IS S +  LT
Sbjct: 67  SIDMKGLCELKQLQELDISYNDLNG-LPSCLTNLNNLQVLDISFNNFSGNISLSRIGSLT 125

Query: 123 SIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLS 182
           SI DL LSDNHFQIPISL P FN S LK  + ++NEI       H+L  P FQLQ L L+
Sbjct: 126 SIRDLKLSDNHFQIPISLGPFFNLSNLKNLNGDHNEIYESTELVHNLI-PRFQLQRLSLA 184

Query: 183 SGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRL 242
             +  G TFPKFLY QHDL++V LSHIK+  EFP+WLL+NNTKL  L LVN SL G  +L
Sbjct: 185 C-HGFGGTFPKFLYYQHDLQFVDLSHIKIIGEFPSWLLQNNTKLEALYLVNSSLSGSLQL 243

Query: 243 PIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFL 302
           P  SH  L  LD+S+N+ Q  IP +IG     L   N+S N   GSIPSS  NM+ L  L
Sbjct: 244 PNDSHVNLSRLDISRNHIQNQIPTKIGAYFPWLEFLNLSRNYFSGSIPSSISNMSSLGVL 303

Query: 303 DLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEI 362
           DLSNN L+G IPE L  GC+SLR L LSNN+L+G  F R+FNL  L  L L GN   G +
Sbjct: 304 DLSNNGLSGNIPEQLVEGCLSLRGLVLSNNHLKGQFFWRSFNLAYLTDLILSGNQLTGIL 363

Query: 363 PQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQI 422
           P SLS  S L+ L +S N+LSGKIPRW+G ++ L+++ + +N++ G +P  FC  R +  
Sbjct: 364 PNSLSNGSRLEALDVSLNNLSGKIPRWIGYMSSLQYLDLSENNLYGSLPSSFCSSRTMT- 422

Query: 423 LDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNI 482
                                 +V+LSKN L G L  G    CL+L  LDLS+N+  G I
Sbjct: 423 ----------------------EVYLSKNKLEGSLI-GALDGCLSLNRLDLSHNYFGGGI 459

Query: 483 PDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHER 542
           P+ +  L +LS+L+L +NNLEG++P QLC+L +L L+DLS+N+L GHI  C   T+  +R
Sbjct: 460 PESIGSLLELSFLLLGYNNLEGKIPSQLCKLEKLSLIDLSHNHLFGHILPCLQPTSKWQR 519

Query: 543 YNNGSSLQPFETSFVIMGGMDVDPK----------KQILESFDFTTKSITYTYQGRVPSL 592
               +SL P   S   +G  +  P+            + +S +FTTKSI+Y+++G +   
Sbjct: 520 ERE-TSLNPSGNS---LGRENRGPQIVFPVPAVEDPSMNKSVEFTTKSISYSFKGIILKY 575

Query: 593 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 652
           +SG+DLSCN L G IP ++GNL+ IQ LNLSHN+L GPIP TFSNL+ IESLDLSYN L+
Sbjct: 576 ISGIDLSCNNLTGEIPVELGNLSNIQVLNLSHNSLTGPIPPTFSNLKEIESLDLSYNNLN 635

Query: 653 WKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLP----IC 708
            +IP QL++LN L+ FSVA+NNLSGK PE  AQF+TFN+S YEGNP LCGPPL       
Sbjct: 636 GEIPRQLLDLNFLSAFSVAHNNLSGKTPEMVAQFSTFNKSCYEGNPLLCGPPLARNCTRA 695

Query: 709 ISPTTMPEASPSNEGDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEM 768
           + P+ +P +    + +N +IDM+ F +TF+ +Y++V+  I +VLY+N RWRR WFY +  
Sbjct: 696 LPPSPLPRSQTHKKEENGVIDMEAFIVTFSVAYIMVLLTIGSVLYINPRWRRAWFYFIGE 755

Query: 769 WTTSCYYFVIDNL-IPTRF 786
              +CYYF++DNL +P RF
Sbjct: 756 SINNCYYFLVDNLPVPARF 774

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  586 bits (1511), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 351/774 (45%), Positives = 482/774 (62%), Gaps = 35/774 (4%)

Query: 26   MDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDL 85
            +D +   +++S LQI+ E M S++ LSL ++ + N S+T  QGLC L +LQEL ++DN  
Sbjct: 697  LDLSSTNISSSILQIV-EVMTSLKALSLRSNGI-NGSQTALQGLCKLKNLQELDLSDNGF 754

Query: 86   RGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFN 145
             GS+  CL N+TSLR LD+S N+  G++ SS    L  +E L LS N FQ    +     
Sbjct: 755  EGSVSPCLGNLTSLRALDLSKNRFSGNLDSSLFAGLMKLEFLSLSHNVFQTFPPISSFAK 814

Query: 146  HSRLKIFD--AENNEINAEIIESHSLT-TPNFQLQSLLLSSGYRDGITFPKFLYNQHDLE 202
            HS+L++ D    NN +   ++ES   T  P+FQL+   LSS      + P FL+ QHDL 
Sbjct: 815  HSKLEVLDLICGNNTL---LLESEDQTWVPSFQLKVFRLSSCILKTGSIPSFLHYQHDLR 871

Query: 203  YVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQG 262
             V LS+  + E+FP WL++NNT+L +L+L N+SL G F LP   +     +D+S N  QG
Sbjct: 872  VVDLSNSSLEEDFPTWLMKNNTRLEELNLKNNSLTGYFHLPYRPNIFTSAIDISNNLLQG 931

Query: 263  HIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCV 322
             +P  I   L  L   N+S N+ +GSIPS FG M  L FLDLSNN  TG IPE LAMGC 
Sbjct: 932  QMPSNISVSLPNLMFLNVSRNSFEGSIPS-FGGMRKLLFLDLSNNLFTGGIPEDLAMGCP 990

Query: 323  SLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSL 382
            SL  L LS N+L G MF R  NL +L  L+L+ NHF G+IP  LS  S L+ L++S+NS+
Sbjct: 991  SLEYLILSKNDLHGQMFPRVSNLPSLRHLELDDNHFSGKIPD-LSNSSGLERLYVSHNSI 1049

Query: 383  SGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVC 442
            SGK+P W+GN++ L  ++MP N +EGPIP+EFC L  L++LD+S+NN+SGSLPSC+    
Sbjct: 1050 SGKLPGWIGNMSNLAALVMPNNSLEGPIPVEFCSLDALELLDLSNNNLSGSLPSCFSPSL 1109

Query: 443  IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNL 502
            +  VHL +N L G L +  F   + L  LD+  N+L+G IPD +   S LS L+L  N+ 
Sbjct: 1110 LIHVHLQENHLTGPLTKA-FTRSMDLATLDIRNNNLSGGIPDWISMFSGLSILLLKGNHF 1168

Query: 503  EGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGS--------------- 547
            +G++P QLC+L+++ +LDLS N+L GHIPSC +       + +G                
Sbjct: 1169 QGKIPYQLCQLSKITILDLSYNSLSGHIPSCLNKIQFRTGFRSGKFSIISYFPSPGFSSY 1228

Query: 548  --SLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIG 605
                Q  E S V +    +   K + E   FTTK+ T  Y+G     ++G+DLS N+L G
Sbjct: 1229 LYHSQHIELSQVNVNSYPIAYDKAMAE---FTTKNRTDFYKGNFLYSMTGIDLSSNKLTG 1285

Query: 606  HIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTL 665
             IPP+IGNL+++  LNLSHN L GPIP+ FS L++IESLDLSYN L+  IP +L EL  L
Sbjct: 1286 AIPPEIGNLSQVHALNLSHNILTGPIPAAFSGLKSIESLDLSYNNLTGTIPGELTELTNL 1345

Query: 666  AVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPI-CISPTTMPEASPSNEGD 724
            AVFSVAYNNLSGKIPE  AQF TF E+SY GNP+LCG  L   C       E     +G 
Sbjct: 1346 AVFSVAYNNLSGKIPEMTAQFGTFLENSYVGNPYLCGSLLRKNCSRAEEEAEIEEGEKG- 1404

Query: 725  NNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVI 778
              L D DIF+++F  SYV+V+ G+ AVLY+N  WR++WF+++++  T C  FV+
Sbjct: 1405 --LTDRDIFYVSFGASYVVVLLGVAAVLYINGGWRKKWFHVIDVLITCCCNFVM 1456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134891|ref|XP_002327515.1| predicted protein [Populus trichocarpa] gi|222836069|gb|EEE74490.1| predicted protein [Populus trichocarpa]

 Score =  585 bits (1509), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 352/796 (44%), Positives = 480/796 (60%), Gaps = 35/796 (4%)

Query: 6   VNGVLSGQG-FPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRT 64
            NG+ +G G F +  +L+ELY+D+  + +N  FLQ IG ++P+++ LS++   +      
Sbjct: 159 ANGLTAGSGTFFNSSTLEELYLDNTSLRIN--FLQNIG-ALPALKVLSVAECDLHGTLPA 215

Query: 65  LDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSI 124
             QG C L +L++L +A N+  GSLP CL N++SL++LDVS NQ  G+ +S PL +L S+
Sbjct: 216 --QGWCELKNLKQLDLARNNFGGSLPDCLGNLSSLQLLDVSENQFTGNFTSGPLTNLISL 273

Query: 125 EDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSG 184
           E L+LS+N F++PIS++P  NHS LK F +ENN +  E +   +L  P FQL    LSS 
Sbjct: 274 EFLLLSNNLFEVPISMKPFLNHSSLKFFSSENNRLVTEPVAFDNLI-PKFQLVFFRLSSS 332

Query: 185 YRDGI--TFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRL 242
                    P FLY Q DL  + LSH  +   FP+WLL+NNT+L QL L  +  VG  +L
Sbjct: 333 PTSEALNVIPDFLYYQLDLRALDLSHNNITGMFPSWLLKNNTRLEQLYLSANFFVGTLQL 392

Query: 243 PIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFL 302
             H +  +  LD+S NN  G I  +I  I   L    ++ N   G IPS  GN++ L FL
Sbjct: 393 QDHPYSNMVELDISNNNMSGQISKDICLIFPNLWTLRMAKNGFTGCIPSCLGNISSLLFL 452

Query: 303 DLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEI 362
           DLSNNQL+    E L     ++  L LSNN+L G + +  FN +   +L L GN+F G+I
Sbjct: 453 DLSNNQLSTVQLEQL-----TIPVLKLSNNSLGGQIPTSVFNSSTSQFLYLNGNNFSGQI 507

Query: 363 PQ-SLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQ 421
               L     L  L LSNN  SG +PR   N T LR + + KNH +GPIP +FC+L  LQ
Sbjct: 508 SDFPLYGWKELNVLDLSNNQFSGMLPRIFVNFTDLRVLDLSKNHYKGPIPKDFCKLGRLQ 567

Query: 422 ILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGN 481
            LD+S+NN+SG +PSC+    +  VHLSKN L G L  G FFN   L+ +DL  N L G+
Sbjct: 568 YLDLSENNLSGYIPSCFSPPPLTHVHLSKNRLSGPLTYG-FFNSSYLVTMDLRDNSLTGS 626

Query: 482 IPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE 541
           IP+ +   S LS L+L  N+ +GE+P+QLC L QL +LD+S N L G +PSC  N T  E
Sbjct: 627 IPNWIGNHSSLSVLLLRANHFDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLGNLTFKE 686

Query: 542 -----RYNNGSS--LQPFETSFV-IMGGMDVDPKKQILESF---------DFTTKSITYT 584
                R + G+S  L+  E ++   MG   VD    + + F         +F TK++ Y 
Sbjct: 687 SSQKARMDLGASIVLESMEKAYYKTMGPPLVDSVYLLGKDFRLNFTEEVIEFRTKNMYYG 746

Query: 585 YQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESL 644
           Y+G + S +SG+DLS N   G IP + GNL++I++LNLSHNN    IP+TFSNL+ IESL
Sbjct: 747 YKGNILSYMSGIDLSNNNFGGAIPQEFGNLSEIRSLNLSHNNPTESIPATFSNLKQIESL 806

Query: 645 DLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPP 704
           DLSYN L+  IP QL E+ TL VFSVA+NNLSG  PER  QF TF+ES YEGNPFLCGPP
Sbjct: 807 DLSYNNLNGVIPPQLTEITTLEVFSVAHNNLSGWTPERKYQFGTFDESCYEGNPFLCGPP 866

Query: 705 LP--ICISPTTMPEASPSNEGDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRW 762
           L     + P +        +GD   IDM+ F+I+F   Y +V+  I AVLY+N  WRRRW
Sbjct: 867 LRNNCSVEPVSSQPVPDDEQGDVGFIDMEFFYISFGVCYTVVVMTIAAVLYINPYWRRRW 926

Query: 763 FYLVEMWTTSCYYFVI 778
            Y +E    +CYYF++
Sbjct: 927 LYFIEDCIDTCYYFMV 942

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123984|ref|XP_002330258.1| predicted protein [Populus trichocarpa] gi|222871714|gb|EEF08845.1| predicted protein [Populus trichocarpa]

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 344/778 (44%), Positives = 473/778 (60%), Gaps = 32/778 (4%)

Query: 20   SLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELH 79
            +L+ELY+D + + LN  FL  IG  +P+++ LS     +  N     QGLC L +L++L 
Sbjct: 241  TLEELYLDGSSLPLN--FLHNIG-VLPALKVLSAGECDL--NGTLPAQGLCGLKNLEQLF 295

Query: 80   MADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPIS 139
            +++N+L GSLP C  N++SL++LDVS NQ IG+I+SSPL +L S+E + LS+NHFQ+PIS
Sbjct: 296  LSENNLEGSLPDCFKNLSSLQLLDVSRNQFIGNIASSPLTNLLSLEFISLSNNHFQVPIS 355

Query: 140  LEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITF--PKFLYN 197
            ++P  NHS L+ F ++NN +  E +  H L  P FQL    LS    + +    P FLYN
Sbjct: 356  MKPFMNHSSLRFFSSDNNRLVTEPMSFHDLI-PKFQLVFFSLSKSSSEALNVETPSFLYN 414

Query: 198  QHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSK 257
            QHDL  + LS       FP+WLL+NNT+L QL L  +S  G  +L  H +  +  +D+S 
Sbjct: 415  QHDLRVLDLSQNSFIGMFPSWLLKNNTRLEQLFLNENSFFGTLQLQDHPNPDMTAIDISN 474

Query: 258  NNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHL 317
            NN  G IP  I  I S L    ++ N L G IPS  GN + L  LDLSNNQL+    E  
Sbjct: 475  NNMHGEIPKNICLIFSNLWTLRMAKNGLTGCIPSCLGNSSSLGVLDLSNNQLSMVELEQF 534

Query: 318  AMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLF- 376
                ++L  L LSNNNL G + +   N + L +L L  N+F G+I    S   ++  +  
Sbjct: 535  ----ITLTFLKLSNNNLGGQLPASMVNSSRLNYLYLSDNNFWGQISDFPSPIKTIWPVLD 590

Query: 377  LSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPS 436
            LSNN  SG +PRW  NLT +  I + KNH  GPIP+EFC+L  L+ LD+SDNN+  S+PS
Sbjct: 591  LSNNQFSGMLPRWFVNLTQIFAIDLSKNHFNGPIPVEFCKLDELKYLDLSDNNLFDSIPS 650

Query: 437  CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLI 496
            C++   I  VHLSKN L G L  G F+N  +L+ LDL  N+  G+I + +  LS LS L+
Sbjct: 651  CFNPPHITHVHLSKNRLSGPLTYG-FYNSSSLVTLDLRDNNFTGSISNWIGNLSSLSVLL 709

Query: 497  LAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGS-------SL 549
            L  NN +GE  +QLC L QL +LD+S N L G +PSC  N +  E Y   S         
Sbjct: 710  LRANNFDGEFLVQLCLLEQLSILDVSQNQLSGPLPSCLGNLSFKESYEKASVDFGFHFGS 769

Query: 550  QPFETSF-------VIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNR 602
             P E ++        ++G   +    +  E  +FT KS+ Y Y+G++ S +SG+DLS N+
Sbjct: 770  TPIEKAYYEFNQTRALLGSSYIPITTE--EVIEFTAKSMYYGYKGKILSFMSGIDLSSNK 827

Query: 603  LIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVEL 662
              G IPP++GNL+++  LNLSHNNL G IP+TFSNL+ IES DLSYN L   IP++L E+
Sbjct: 828  FSGAIPPELGNLSELLALNLSHNNLTGSIPATFSNLKQIESFDLSYNNLDGVIPHKLYEI 887

Query: 663  NTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTMPEASPSNE 722
             TL VFSVA+NNLSG+ PER  QF TF+ESSYEGNPFLCGPPL    S    P     N+
Sbjct: 888  TTLEVFSVAHNNLSGETPERKYQFGTFDESSYEGNPFLCGPPLQNNCSEEESPSLPMPND 947

Query: 723  G--DNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVI 778
               D+  IDM+ F+I+    Y++V+ GI AVLY+N  WR  WF  ++    +C+ F++
Sbjct: 948  KQEDDGFIDMNFFYISLGVGYIVVVMGIAAVLYINPYWRCGWFNFIDYCIDTCFNFLL 1005

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073436|ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|222841527|gb|EEE79074.1| predicted protein [Populus trichocarpa]

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 350/804 (43%), Positives = 485/804 (60%), Gaps = 47/804 (5%)

Query: 6    VNGVLSGQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTL 65
            VNG      F +  +L+ELY+D  R +L  +FLQ IG ++P ++ LS++   +       
Sbjct: 216  VNGT-----FFNSSTLEELYLD--RTSLPINFLQNIG-ALPDLKVLSVAECDLHGTLPA- 266

Query: 66   DQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIE 125
             QG C L +L++L ++ N+L GSLP CL N++SL++LDVS NQ  G+I+S PL +LTS+E
Sbjct: 267  -QGWCELKNLRQLDLSGNNLGGSLPDCLGNLSSLQLLDVSENQFTGNIASGPLTNLTSLE 325

Query: 126  DLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGY 185
             L LS+N F++PIS++P  NHS LK F +ENN++  E     +L  P FQL    LS   
Sbjct: 326  FLSLSNNLFEVPISMKPFMNHSSLKFFSSENNKLVTEPAAFDNLI-PKFQLVFFRLSKTT 384

Query: 186  RD-GITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPI 244
                +  P FLY Q+D+  + LSH  +   FP+WLL+NNT+L QL L N+S VG  +L  
Sbjct: 385  EALNVKIPDFLYYQYDIRVLDLSHNNITAMFPSWLLKNNTRLEQLYLSNNSFVGTLQLQD 444

Query: 245  HSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDL 304
            H +  +  LD+S NN  G IP +I  I   +    ++ N   G IPS  GN++ L+ LDL
Sbjct: 445  HPYLNMTELDISNNNMNGQIPKDICLIFPNMWSLRMANNGFTGCIPSCLGNISSLKILDL 504

Query: 305  SNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ 364
            SNNQL+    E L     ++  L LSNNNL G + +  FN + L +L L GN+F G+I  
Sbjct: 505  SNNQLSIVKLEQLT----TIWFLKLSNNNLGGQLPTSVFNSSTLEYLYLHGNNFWGQISD 560

Query: 365  SLSKCSSLQG-LFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQIL 423
             L     +   L LS+N  SG +PRWL N T L  I + KN+ +GPI  +FC+L  L+ L
Sbjct: 561  FLLYGWKMWSTLDLSDNQFSGMLPRWLVNSTGLIAIDLSKNYFKGPILRDFCKLNQLEYL 620

Query: 424  DISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP 483
            D+S+NN+SG +PSC+    I  VHLS+N L G L  G F+N  +L+ +DL  N+  G+ P
Sbjct: 621  DLSENNLSGYIPSCFSPPQITHVHLSENRLSGPLTYG-FYNNSSLVTMDLRDNNFTGSFP 679

Query: 484  DRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERY 543
            + +  LS LS L+L  N+ +GE+P+QLC L QL +LD+S N L G +PSC  N T  E  
Sbjct: 680  NWIGNLSSLSVLLLRANHFDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLGNLTFKESS 739

Query: 544  NN-----GSSL--QPFETSFV-IMGGMDVDPKKQILESF---------DFTTKSITYTYQ 586
                   G+ +  +  E ++   MG   V+    + + F         +FTTK++ Y Y+
Sbjct: 740  QKTLADLGADVLSRSIEKAYYETMGPPLVESMYNLRKGFLLNFTEEVIEFTTKNMYYRYK 799

Query: 587  GRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDL 646
            G+  S +SG+DLS N  +G IPP+ G+L+KI +LNLSHNNL G IP+TFSNL+ IESLDL
Sbjct: 800  GKTLSYMSGIDLSNNNFVGAIPPEFGDLSKILSLNLSHNNLTGSIPATFSNLKQIESLDL 859

Query: 647  SYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL- 705
            SYN L+  IP QL ++ TL VFSVA+NNLSG  PER  QF TF+ES YEGNPFLCGPPL 
Sbjct: 860  SYNNLNGVIPPQLTDITTLEVFSVAHNNLSGNTPERKYQFGTFDESCYEGNPFLCGPPLR 919

Query: 706  -----------PICISPTTMPEASPSNEGDNNLIDMDIFFITFTTSYVIVIFGIVAVLYV 754
                       P+   P          +GD+  IDM+ F+I F   Y +V+  IV VLY+
Sbjct: 920  NNCSEEAVPSQPVPSQPVPSQPVPYDEQGDDGFIDMEFFYINFGVCYTVVVMIIVVVLYI 979

Query: 755  NARWRRRWFYLVEMWTTSCYYFVI 778
            +  WRRRW Y +E    +CYYFV+
Sbjct: 980  DPYWRRRWSYFIEDCIDTCYYFVV 1003

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073382|ref|XP_002304087.1| predicted protein [Populus trichocarpa] gi|222841519|gb|EEE79066.1| predicted protein [Populus trichocarpa]

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 336/740 (45%), Positives = 457/740 (61%), Gaps = 37/740 (5%)

Query: 68   GLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDL 127
            G C + +L++L ++ N+  GSLP CL N++SL++LD+S NQ  G+I+ SPL +L S+E L
Sbjct: 567  GWCEMKNLKQLDLSGNNFGGSLPDCLGNLSSLQLLDISENQFTGNIAFSPLTNLISLEFL 626

Query: 128  ILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLT--TPNFQLQSLLLSSGY 185
             LS+N F++P S++P  NHS LK F  ENN +   +IE  +     P FQL    LS   
Sbjct: 627  SLSNNLFEVPTSMKPFMNHSSLKFFCNENNRL---VIEPAAFDHLIPKFQLVFFSLSKTT 683

Query: 186  RD-GITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPI 244
                +  P FLY Q+ L ++ LSH  +   FP+WLL+NNT+L QL L  +S+VG  +L  
Sbjct: 684  EALNVEIPNFLYYQYHLRFLDLSHNNITGMFPSWLLKNNTRLEQLYLSGNSIVGTLQLQD 743

Query: 245  HSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDL 304
            H + ++  LD+S NN  G IP +I  I   L    ++ N   G IPS  GNM+ L  LDL
Sbjct: 744  HPYPKMTELDISNNNMSGQIPKDICLIFPNLDGLRMAKNGFTGCIPSCLGNMSSLGVLDL 803

Query: 305  SNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ 364
            SNNQL+    E L     ++  L LSNNNL G + +  FN +   +L L  N+F G+I  
Sbjct: 804  SNNQLSTVKLELLT----TIWFLKLSNNNLGGQIPTSMFNSSTSEYLYLGDNNFWGQISD 859

Query: 365  S-LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEF-CQLRILQI 422
            S L+   +   L LSNN  SG +PRW  N T L  I + KNH EGPI   F C+L  L+ 
Sbjct: 860  SPLNGWKTWIVLDLSNNQFSGILPRWFVNSTNLIAIDLSKNHFEGPISRHFFCKLDQLEY 919

Query: 423  LDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNI 482
            LD+S+NN+ G +PSC++   I  VHLSKN L G LK   F+N  +L+ +DL  N   G+I
Sbjct: 920  LDLSENNLFGYIPSCFNSPQITHVHLSKNRLSGPLKY-EFYNSSSLVTMDLRDNSFTGSI 978

Query: 483  PDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHER 542
            P+ V  LS LS L+L  N+L+GE+P+QLC L QL +LD+S N L G +PSC +N T  E 
Sbjct: 979  PNWVGNLSSLSVLLLRANHLDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLENLTFKES 1038

Query: 543  -----YNNGSSLQP--FETSF-VIMGGMDVDPKKQILESF---------DFTTKSITYTY 585
                  N G  L P   E ++  IMG   V+    +L+ +         +FTTK++ Y Y
Sbjct: 1039 SQKALMNLGGFLLPGFIEKAYNEIMGPPQVNSIYTLLKGYWPNFTEEVIEFTTKNMYYGY 1098

Query: 586  QGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLD 645
            +G++ S +SG+DLS N  +G IPP+ GNL++I +LNLSHNNL G IP+TFSNL+ IESLD
Sbjct: 1099 KGKILSYMSGIDLSDNNFVGAIPPEFGNLSEILSLNLSHNNLTGSIPATFSNLKRIESLD 1158

Query: 646  LSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL 705
            LSYN  +  IP QL E+ TL VFSVA+NNLSGK PER  QF TF+ES YEGNPFLCGPPL
Sbjct: 1159 LSYNNFNGDIPPQLTEMTTLEVFSVAHNNLSGKTPERKYQFGTFDESCYEGNPFLCGPPL 1218

Query: 706  ------PICISPTTMPEASPSNEG-DNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARW 758
                   + +S   + +  P++E  D+  IDM+ F+I+F+  Y +V+  I AVLY+N  W
Sbjct: 1219 RNNCSEEVVLSQPVLSQPVPNDEQEDDGFIDMEFFYISFSVCYTVVVMTIAAVLYINPYW 1278

Query: 759  RRRWFYLVEMWTTSCYYFVI 778
            RRRW Y +E    +CYYFV+
Sbjct: 1279 RRRWLYFIEDCIDTCYYFVV 1298

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124490|ref|XP_002330036.1| predicted protein [Populus trichocarpa] gi|222871461|gb|EEF08592.1| predicted protein [Populus trichocarpa]

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 341/807 (42%), Positives = 474/807 (58%), Gaps = 45/807 (5%)

Query: 7   NGVLSGQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLD 66
           N      G    + L+ LY+D       +  ++ +G ++PS++ L    S  ++      
Sbjct: 180 NRFTGSTGLNGLRKLETLYLDSTDFK-ESILIESLG-ALPSLKTLHARYSRFTH----FG 233

Query: 67  QGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIED 126
           +G C L +L+ L ++ N+L+G LP C  N++SL+ILD+S NQL G+I+ S + HLT +E 
Sbjct: 234 KGWCELKNLEHLFLSGNNLKGVLPPCFGNLSSLQILDLSYNQLEGNIAFSHISHLTQLEY 293

Query: 127 LILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYR 186
           L +S+N+FQ+PIS     NHS LK F+ +NNE+ A    S     P F+L+    S+   
Sbjct: 294 LSVSNNYFQVPISFGSFMNHSNLKFFECDNNELIAA--PSFQPLVPKFRLRVFSASNCTP 351

Query: 187 DGIT--FPKFLYNQHDLEYVRLSHIK-MNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLP 243
             +   FP FL +Q+DL +V LSH K + E FP+WL ENNTKL +L L + S +GP +LP
Sbjct: 352 KPLEAGFPNFLQSQYDLVFVDLSHNKFVGESFPSWLFENNTKLNRLYLRDTSFIGPLQLP 411

Query: 244 IHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLD 303
            H    L+ +D+S N+  G I   I  I  RL  F ++ N+L G IP  FGNM+ L++LD
Sbjct: 412 QHPTPNLQTVDMSGNSIHGQIARNICSIFPRLKNFMMANNSLTGCIPPCFGNMSSLEYLD 471

Query: 304 LSNNQLTGEIPEH-LAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEI 362
           LSNN ++ E+ EH L     SL SL LSNNN +G +    FN+T+L +L L+GN F G++
Sbjct: 472 LSNNHMSCELLEHNLPTVGSSLWSLKLSNNNFKGRLPLSVFNMTSLEYLFLDGNKFAGQV 531

Query: 363 PQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRH--IIMPKNHIEGPIPLEFCQLRIL 420
             + S  SS     +SNN LSG +PR +GN ++ R   I + +NH EG IP E+     L
Sbjct: 532 SGTFSLASSFSWFDISNNLLSGMLPRGIGNSSIYRFQAIDLSRNHFEGTIPKEYFNSYWL 591

Query: 421 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG 480
           + LD+S+NN+SGSLP  +    +  VHL  N L G L    F+N  +L+ LDL YN+L G
Sbjct: 592 EFLDLSENNLSGSLPLGFLAPHLRHVHLYGNRLTGPLPNA-FYNISSLVTLDLGYNNLTG 650

Query: 481 NIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLH 540
            IP+ +  LS+LS L+L  N   GE+P+QLC L +L +LDLS NN  G +PSC  N    
Sbjct: 651 PIPNWIASLSELSILLLKSNQFNGELPVQLCLLRKLSILDLSENNFSGLLPSCLSNLDFT 710

Query: 541 ERY------------NNGSSLQPFETSFVIMGGMDVD------------PKKQILESFDF 576
           E Y            ++GS  + F +    +GG ++             P+  +  S + 
Sbjct: 711 ESYEKTLVHTSTESRDDGSRKEIFAS----IGGRELGNEGFYLFDKILWPEISVKISVEL 766

Query: 577 TTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFS 636
           T+K   YTY+G +   +S +DLSCNR  G IP + GNL+ I  LNLS NN  G IP +FS
Sbjct: 767 TSKKNFYTYEGDILRYMSVMDLSCNRFTGEIPTEWGNLSGIYALNLSQNNFNGLIPPSFS 826

Query: 637 NLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEG 696
           NL+ IESLDLS+N L+ +IP QLVEL  LAVF+V+YN LSG+ PE   QFATF+ESSY+G
Sbjct: 827 NLKQIESLDLSHNNLNGRIPAQLVELTFLAVFNVSYNKLSGRTPEMKNQFATFDESSYKG 886

Query: 697 NPFLCGPPLPICISPTTMPEASPSNE--GDNNLIDMDIFFITFTTSYVIVIFGIVAVLYV 754
           NP LCGPPL      T  P A   N+  GD   IDM  F+ +F   Y+IV+  I AVL +
Sbjct: 887 NPLLCGPPLQNSCDKTESPSARVPNDSNGDGGFIDMYSFYASFGVCYIIVVLTIAAVLCI 946

Query: 755 NARWRRRWFYLVEMWTTSCYYFVIDNL 781
           N  WRRRWFY +E    +CY F+  N 
Sbjct: 947 NPDWRRRWFYFIEECMDTCYCFLAINF 973

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073422|ref|XP_002304093.1| predicted protein [Populus trichocarpa] gi|222841525|gb|EEE79072.1| predicted protein [Populus trichocarpa]

 Score =  553 bits (1424), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 344/792 (43%), Positives = 471/792 (59%), Gaps = 46/792 (5%)

Query: 10  LSGQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGL 69
           LS   F +  +L+EL++D+  + +N  FLQ    ++P+++ LS+    +        QG 
Sbjct: 190 LSQGTFFNSSTLEELHLDNTSLPIN--FLQNT-RALPALKVLSVGECDLHGTLPA--QGW 244

Query: 70  CPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLIL 129
           C L +L++L +A N+  G+LP CL N++SL +LDVS NQ  G+I S PL +L S+E L L
Sbjct: 245 CELKNLKQLDLARNNFGGALPDCLGNLSSLTLLDVSENQFTGNIVSGPLTNLVSLEFLSL 304

Query: 130 SDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSL-LLSSGYRDG 188
           S+N F++P S++P  NHS LK F +ENN +  E     +L  P FQL  L LL +     
Sbjct: 305 SNNLFEVPTSMKPFMNHSSLKFFSSENNRLVTEPAAFDNLI-PKFQLVFLSLLKTTEALN 363

Query: 189 ITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHK 248
           +  P FLY Q+DL  + LSH  +   FP+WLL+NNT++ QL L ++S VG  +LP H + 
Sbjct: 364 VHIPDFLYYQYDLRVLDLSHNNITGMFPSWLLKNNTRMEQLDLSDNSFVGTLQLPDHPYP 423

Query: 249 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ 308
            +  LD+S NN    IP +I  IL  L    +  N   G IPS  GN++ L  LDLSNNQ
Sbjct: 424 NMTKLDISNNNMNSQIPKDICLILPNLESLRMVKNGFTGCIPSCLGNISSLSVLDLSNNQ 483

Query: 309 LTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ-SLS 367
           L+    E L     +L  L LSNNNL G +    FN + L +L L GN+F G+I   SL 
Sbjct: 484 LSTVKLELLT----TLMFLKLSNNNLGGQIPISVFNSSTLEFLYLNGNNFCGQILYLSLY 539

Query: 368 KCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEF-CQLRILQILDIS 426
           +      L LSNN  SG +PRW  N TVL  I + KNH +GPIP +F C+   L+ LD+S
Sbjct: 540 EQKMWFVLDLSNNQFSGMLPRWFVNSTVLEAIDLSKNHFKGPIPRDFFCKFDHLEYLDLS 599

Query: 427 DNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV 486
           +NN+SG +PSC+    I  +HLSKN L G L  G F+N  +L+ +DL  N    +IP+ +
Sbjct: 600 ENNLSGYIPSCFSPPQITHLHLSKNRLSGPLTYG-FYNSSSLVTMDLQDNSFTDSIPNWI 658

Query: 487 DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHER---- 542
             LS LS L+L  N+ +           QL +LD+S N L G +PSC  N T  E     
Sbjct: 659 GNLSSLSVLLLRANHFD----------EQLSILDVSQNQLSGPLPSCLGNLTFKESSQKA 708

Query: 543 ------YNNGSSLQPFETSFVIMGGMDVDPK--------KQILESFDFTTKSITYTYQGR 588
                 ++   S++  +T +  MG   VD            I E  +FTTK ++Y Y+G+
Sbjct: 709 ILDFVIFDISRSIE--KTYYETMGPPLVDSVYLGKGFGLNLIEEVIEFTTKKMSYGYKGK 766

Query: 589 VPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSY 648
           V + +SG+DLS N  +G IPP+ GNL++I +LNLSHNNL G IP+TFSNL+ IESLDLSY
Sbjct: 767 VLNYMSGIDLSNNNFVGAIPPEFGNLSEILSLNLSHNNLTGSIPATFSNLKQIESLDLSY 826

Query: 649 NKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLP-I 707
           N L+  IP QL E+ TL VFSVA+NNLSGK PER  QF TF+ES YEGNPFLCGPPL   
Sbjct: 827 NNLNGVIPPQLTEITTLEVFSVAHNNLSGKTPERKYQFGTFDESCYEGNPFLCGPPLRNN 886

Query: 708 CISPTTMPEASPSNE-GDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLV 766
           C       +  P++E GD+  +DM+ F+I+F   Y +V+  I AVLY+N  WRRRW + +
Sbjct: 887 CSEEAVSSQPVPNDEQGDDGFVDMEFFYISFGVCYTVVVMTIAAVLYINPYWRRRWLFFI 946

Query: 767 EMWTTSCYYFVI 778
           E    +CYYF +
Sbjct: 947 EDCIDTCYYFGV 958

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098008|ref|XP_002334579.1| predicted protein [Populus trichocarpa] gi|222873205|gb|EEF10336.1| predicted protein [Populus trichocarpa]

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 337/776 (43%), Positives = 460/776 (59%), Gaps = 48/776 (6%)

Query: 10   LSGQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGL 69
            LS   F +  +L+EL++D+  + +N  FLQ  G ++P+++ LS++   +        QG 
Sbjct: 352  LSQGTFFNSSTLEELHLDNTSLPIN--FLQNTG-ALPALKVLSVAECDLHGTLPA--QGW 406

Query: 70   CPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLIL 129
            C L +L++L +A N+  G+LP CL N++SL++LDVS NQ  G+I+  PL  L S+E L L
Sbjct: 407  CELKNLKQLDLARNNFGGALPDCLGNLSSLQLLDVSDNQFTGNIAFGPLTKLISLEFLSL 466

Query: 130  SDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRD-- 187
            S+N F++PIS++P  NHS LK F +ENN +  E     +L  P FQL    LSS      
Sbjct: 467  SNNLFEVPISMKPFMNHSSLKFFSSENNRLVTESAAFDNLI-PKFQLVFFRLSSSPTSEA 525

Query: 188  -GITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHS 246
              +    FLY Q+DL  + LSH  +   FP+WLL+NNT++ QL L  +S VG  +L  H 
Sbjct: 526  LNVEILDFLYYQYDLRTLDLSHNNIFGMFPSWLLKNNTRMEQLYLSENSFVGTLQLLDHP 585

Query: 247  HKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSN 306
            +  +  LD+S NN  G IP +I  I   L +  ++ N   G IPS  GN + L FLDLSN
Sbjct: 586  YPNMTELDISNNNINGQIPKDICLIFPNLWILRMADNGFTGYIPSCLGNFSSLSFLDLSN 645

Query: 307  NQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ-S 365
            NQL+    E L     +++ L LSNN+L G + +  FN +   +L L GN+F G+I    
Sbjct: 646  NQLSTVKLEQL----TTIQVLKLSNNSLGGQIPTSVFNSSISQYLYLGGNYFWGQISDFP 701

Query: 366  LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI 425
            L        L LSNN  SG +PR   N T    + + KN  +GPIP +FC+L  L+ LD+
Sbjct: 702  LYGWKVWSVLDLSNNQFSGMLPRSFFNFTYDEVLDLSKNLFKGPIPRDFCKLDRLEFLDL 761

Query: 426  SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDR 485
            SDN +SG +PSC++   I  +HLSKN L G L  G F+N  +L+ +DL  N   G+IP+ 
Sbjct: 762  SDNYLSGYMPSCFNPPQITHIHLSKNRLSGPLTYG-FYNSSSLVTMDLRDNSFIGSIPNW 820

Query: 486  VDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNN 545
            +  LS LS L+L  NN +GE+ +QLC L QL +LD+S N L G +PSC  N TL E   N
Sbjct: 821  IGNLSSLSVLLLRANNFDGELAVQLCLLEQLSILDVSQNQLSGPLPSCLGNLTLKEIPEN 880

Query: 546  GSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIG 605
                                               I ++  G+V S + G+DLS N  +G
Sbjct: 881  ARG------------------------------SRIWFSVMGKVLSYMYGIDLSNNNFVG 910

Query: 606  HIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTL 665
             IPP+ GNL+KI +LNLSHNNL G IP+TFSNL+ IESLDLSYN L+  IP QL E+ TL
Sbjct: 911  AIPPEFGNLSKILSLNLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGAIPPQLTEITTL 970

Query: 666  AVFSVAYNNLSGKIPERAAQFATF-NESSYEGNPFLCGPPLPICISPTTMP-EASPSNE- 722
             VFSVAYNNLSG+ PER  QF TF +E+ YEGNPFLCGPPL    S   +P +  P++E 
Sbjct: 971  EVFSVAYNNLSGRTPERKYQFGTFDDENCYEGNPFLCGPPLRNNCSEEAVPLQPVPNDEQ 1030

Query: 723  GDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTSCYYFVI 778
            GD+  IDM+ F+I+F   Y +V+  I AVLY+N  WRRRW Y +E    +CYYFV+
Sbjct: 1031 GDDGFIDMEFFYISFGVCYTVVVMTIAAVLYINPYWRRRWSYFIEDCINTCYYFVV 1086

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	788
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.894	0.705	0.350	5.1e-106
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.870	0.769	0.347	1.2e-100
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.812	0.590	0.364	2.3e-99
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.878	0.709	0.347	7.8e-94
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.876	0.739	0.330	3e-85
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.717	0.622	0.344	4.8e-78
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.777	0.635	0.310	2.8e-73
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.774	0.520	0.290	1.9e-62
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.780	0.491	0.278	1.2e-54
TAIR|locus:2167948	966	ERL1 "ERECTA-like 1" [Arabidop	0.587	0.479	0.338	2.4e-51

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 1049 (374.3 bits), Expect = 5.1e-106, P = 5.1e-106
 Identities = 257/733 (35%), Positives = 379/733 (51%)

Query:    68 GLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVXXXXXXXXXXXXPLIHLTSIEDL 127
             G CP  +++EL +++N L G  P CL ++T LR+LD+             L +L S+E L
Sbjct:   253 GTCPWKNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSA-LANLESLEYL 311

Query:   128 ILSDNHFQIPISLEPLFNHSRLKIFDXXXXXXXXXXXXSHSLTTPNFQLQSLLLSSGYRD 187
              L  N+F+   SL  L N S+LK+                S   P FQL  + L S   +
Sbjct:   312 SLFGNNFEGFFSLGLLANLSKLKVLRLDSQSNSLEVEFETSWK-PKFQLVVIALRSCNLE 370

Query:   188 GITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSH 247
              +  P FL +Q DL +V LS  +++  FP+WLLENNTKL  L L N+S    F+LP  +H
Sbjct:   371 KV--PHFLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNSFTS-FQLPKSAH 427

Query:   248 KQLRLLDVSKNNFQGHIPLE-IGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSN 306
               L  L+VS N F  H+ L+  G IL  L   N++ N   G++PSS  NM  ++FLDLS+
Sbjct:   428 NLL-FLNVSVNKFN-HLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSH 485

Query:   307 NQLTGEIPEHLAMGCVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSL 366
             N+  G++P     GC              G +F    N T L  + ++ N F G I +  
Sbjct:   486 NRFHGKLPRRFLKGCYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNIGKGF 545

Query:   367 SKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDIS 426
                 SL  L +SNN L+G IP W+G    L  + +  N +EG IP     +  LQ+LD+S
Sbjct:   546 RSLPSLNVLDISNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLS 605

Query:   427 DNNISGSLPSCYDFVCIEQVHL-SKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDR 485
              N +SG +P     +    V L   N L G + +    N   +++LDL  N L+GN+P+ 
Sbjct:   606 SNRLSGDIPPHVSSIYHGAVLLLQNNNLSGVIPDTLLLN---VIVLDLRNNRLSGNLPEF 662

Query:   486 VDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGHIPSCFDNTT--LHE-- 541
             ++    +S L+L  NN  G++P                   +G IPSC  NT+  L +  
Sbjct:   663 IN-TQNISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGSIPSCLSNTSFGLRKGD 721

Query:   542 ---RYNN----GSSLQP--FETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSL 592
                RY+     G++  P  FE S +++   ++  +       +F TK     Y G    L
Sbjct:   722 DSYRYDVPSRFGTAKDPVYFE-SLLMIDEFNMVNETNSQTKIEFATKHRYDAYMGGNLKL 780

Query:   593 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 652
             L G+DLS N L G IP ++G L +++ LNLSHNNL+G I  +FS L+N+ESLDLS+N+L 
Sbjct:   781 LFGMDLSENELSGEIPVELGGLVELEALNLSHNNLSGVILESFSGLKNVESLDLSFNRLQ 840

Query:   653 WKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPT 712
               IP QL ++ +LAVF+V+YNNLSG +P+   QF TF   SY GNP LCG  + I  +  
Sbjct:   841 GPIPLQLTDMISLAVFNVSYNNLSGIVPQ-GRQFNTFETQSYFGNPLLCGKSIDISCASN 899

Query:   713 TMPEASPSNEGDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTS 772
                      E D + +DM+ F+ +F  +YV ++ GI+A L  ++ W R WFY+V+ +   
Sbjct:   900 NFHPTDNGVEADESTVDMESFYWSFVAAYVTILLGILASLSFDSPWSRAWFYIVDAFVLK 959

Query:   773 CYYFVIDNLIPTR 785
                 +  N   T+
Sbjct:   960 VRNMLWQNTAGTK 972

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 981 (350.4 bits), Expect = 1.2e-100, Sum P(2) = 1.2e-100
 Identities = 251/722 (34%), Positives = 375/722 (51%)

Query:    67 QGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVXXXXXXXXXXXXPLIHLTSIED 126
             QG+C L  LQEL ++ N   G +P C +  + LR+LD+             +    S+E 
Sbjct:   172 QGICRLEQLQELRLSRNRFEGEIPLCFSRFSKLRVLDLSSNHLSGKIPYF-ISDFKSMEY 230

Query:   127 LILSDNHFQIPISLEPLFNHSRLKIFDXXXXXXXXXXXXSHSLTTPNFQLQSLLLSSGYR 186
             L L DN F+   SL  +   + LK+F             ++       QL S++LS    
Sbjct:   231 LSLLDNDFEGLFSLGLITELTELKVFKLSSRSGMLQIVETNVSGGLQSQLSSIMLSHCNL 290

Query:   187 DGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHS 246
               I  P FL+ Q +L  + LS+  ++  FP WLLENNT+L+ L L N+S      LP  +
Sbjct:   291 GKI--PGFLWYQQELRVIDLSNNILSGVFPTWLLENNTELQALLLQNNSFK-TLTLP-RT 346

Query:   247 HKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSN 306
              ++L++LD+S NNF   +P ++G IL+ L   N+S N   G++PSS   M  ++F+DLS 
Sbjct:   347 MRRLQILDLSVNNFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSMARMENIEFMDLSY 406

Query:   307 NQLTGEIPEHLAMGCVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSL 366
             N  +G++P +L  GC              G +  ++ + T+LI L ++ N F G+IP++L
Sbjct:   407 NNFSGKLPRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNNMFTGKIPRTL 466

Query:   367 SKCSSLQGLFLSNNSLSGKIPRWLGN--LTVLRHIIMPKNHIEGPIPLEFCQLRILQILD 424
                  L  + LSNN L+G IPRWLGN  L VLR   +  N ++G IP     +  L +LD
Sbjct:   467 LNLRMLSVIDLSNNLLTGTIPRWLGNFFLEVLR---ISNNRLQGAIPPSLFNIPYLWLLD 523

Query:   425 ISDNNISGSLP--SCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNI 482
             +S N +SGSLP  S  D+  I  +H   N L G + +  ++    L +LDL  N L+GNI
Sbjct:   524 LSGNFLSGSLPLRSSSDYGYILDLH--NNNLTGSIPDTLWYG---LRLLDLRNNKLSGNI 578

Query:   483 PDRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGHIPSCFDNTTL--- 539
             P        +S ++L  NNL G++P+                  +  IPSC  N +    
Sbjct:   579 P-LFRSTPSISVVLLRENNLTGKIPVELCGLSNVRMLDFAHNRLNESIPSCVTNLSFGSG 637

Query:   540 -HERYNNG---SSL---------QPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQ 586
              H   ++    +SL         + +  S ++     +D         +F  K     Y 
Sbjct:   638 GHSNADSDWYPASLLSNFMEIYTEVYYESLIVSDRFSLDYSVDFNVQVEFAVKQRYDLYM 697

Query:   587 GRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDL 646
                 + + GLDLS N L G+IP ++G+L ++++LNLS N+L+G IP +FSNLR+IESLDL
Sbjct:   698 RGTLNQMFGLDLSSNELSGNIPEELGDLKRVRSLNLSRNSLSGSIPGSFSNLRSIESLDL 757

Query:   647 SYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLP 706
             S+NKL   IP QL  L +L VF+V+YNNLSG IP+   QF TF E SY GN  LCG P  
Sbjct:   758 SFNKLHGTIPSQLTLLQSLVVFNVSYNNLSGVIPQ-GKQFNTFGEKSYLGNFLLCGSPTK 816

Query:   707 ICISPTTMPEASPSNEGDNN-LIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYL 765
                  TT+       + D + L+D+ + + +  T+YV V+ G +  L  ++ WRR WF L
Sbjct:   817 RSCGGTTISSGKEYEDDDESGLLDIVVLWWSLGTTYVTVMMGFLVFLCFDSPWRRAWFCL 876

Query:   766 VE 767
             V+
Sbjct:   877 VD 878

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 948 (338.8 bits), Expect = 2.3e-99, Sum P(2) = 2.3e-99
 Identities = 245/672 (36%), Positives = 349/672 (51%)

Query:    68 GLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVXXXXXXXXXXXXPLIHLTSI-ED 126
             G+C L+ L+EL ++ N L  SLP+CL N+T LR LD+             +  L S+ E 
Sbjct:   353 GICRLMKLRELDLSSNALT-SLPYCLGNLTHLRTLDLSNNQLNGNLSSF-VSGLPSVLEY 410

Query:   127 LILSDNHFQIPISLEPLFNHSRLKIFDXXXXXXXXXXXXSHSLTTPNFQLQSLLLSSGYR 186
             L L DN+F        L N +RL +F               S   P FQL+ L LS+   
Sbjct:   411 LSLLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQTESSWA-PLFQLKMLYLSNCSL 469

Query:   187 DGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHS 246
              G T   FL +Q DL +V LSH K+   FP WL++NNT+L+ + L  +SL    +LPI  
Sbjct:   470 -GSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLT-KLQLPILV 527

Query:   247 HKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSN 306
             H  L++LD+S N     I  +IG +   L   N S N   G+IPSS G M  LQ LD+S+
Sbjct:   528 HG-LQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSS 586

Query:   307 NQLTGEIPEHLAMGCVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSL 366
             N L G++P     GC             +G +FS++ NLT L+ L L+GN+F G + + L
Sbjct:   587 NGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEEGL 646

Query:   367 SKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDIS 426
              K  +L  L +S+N  SG +P W+G ++ L ++ M  N ++GP P    Q   ++++DIS
Sbjct:   647 LKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPF-LRQSPWVEVMDIS 705

Query:   427 DNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV 486
              N+ SGS+P   +F  + ++ L  N   G L  G  F    L +LDL  N+ +G I + +
Sbjct:   706 HNSFSGSIPRNVNFPSLRELRLQNNEFTG-LVPGNLFKAAGLEVLDLRNNNFSGKILNTI 764

Query:   487 DGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGHIPSCFDNTTLHERYNNG 546
             D  S+L  L+L +N+ +  +P                    G IPSCF   +     N+ 
Sbjct:   765 DQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMSFGAEQNDR 824

Query:   547 --SSLQPFETSFVIM------GG-MDVD--------PKKQILESFDFTTKSITYTYQGRV 589
               S +  F+ S++        G  +++D        PK   +   DF TKS    YQG +
Sbjct:   825 TMSLVADFDFSYITFLPHCQYGSHLNLDDGVRNGYQPKPATV--VDFLTKSRYEAYQGDI 882

Query:   590 PSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYN 649
                + GLDLS N L G IP +IG+L  I++LNLS N L G IP + S L+ +ESLDLS N
Sbjct:   883 LRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLESLDLSNN 942

Query:   650 KLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL-PIC 708
             KL   IP  L +LN+L   +++YNNLSG+IP +     TF+E SY GN  LCG P    C
Sbjct:   943 KLDGSIPPALADLNSLGYLNISYNNLSGEIPFKG-HLVTFDERSYIGNAHLCGLPTNKNC 1001

Query:   709 ISPTTMPEASPS 720
             IS   +PE  PS
Sbjct:  1002 ISQR-VPEP-PS 1011

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 934 (333.8 bits), Expect = 7.8e-94, P = 7.8e-94
 Identities = 252/725 (34%), Positives = 360/725 (49%)

Query:    70 CPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVXXXXXXXXXXXXPLIHLTSIEDLIL 129
             C + +L++L +  N   G LP CL N+  LR+LD+                L S+E L L
Sbjct:   257 CEMKNLRQLDLRGNYFEGQLPVCLGNLNKLRVLDLSSNQLSGNLPAS-FNSLESLEYLSL 315

Query:   130 SDNHFQIPISLEPLFNHSRLKIFDXXXXXXXXXXXXSHSLTTPNFQLQSLLLSSGYRDGI 189
             SDN+F+   SL PL N ++LK+F             + S   P FQL    L       I
Sbjct:   316 SDNNFEGFFSLNPLANLTKLKVF-RLSSTSEMLQVETESNWLPKFQLTVAALPFCSLGKI 374

Query:   190 TFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQ 249
               P FL  Q +L  V LS  +++ + P WLLENN +L+ L L N+S    F++P   HK 
Sbjct:   375 --PNFLVYQTNLRLVDLSSNRLSGDIPTWLLENNPELKVLQLKNNSFT-IFQIPTIVHK- 430

Query:   250 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQL 309
             L++LD S N+  G +P  IG +L RL   N S N   G++PSS G MN + FLDLS N  
Sbjct:   431 LQVLDFSANDITGVLPDNIGHVLPRLLHMNGSHNGFQGNLPSSMGEMNDISFLDLSYNNF 490

Query:   310 TGEIPEHLAMGCVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKC 369
             +GE+P  L  GC              G +      LT+LI L++  N F GEI   L   
Sbjct:   491 SGELPRSLLTGCFSLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNNLFTGEIGVGLRTL 550

Query:   370 SSLQGLFLSNNSLSGKIPRWLG-NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDN 428
              +L     SNN L+G I   +  + + L  +++  N +EG +P     +  L  LD+S N
Sbjct:   551 VNLSIFDASNNRLTGLISSSIPPDSSHLIMLLLSNNLLEGTLPPSLLAIHHLNFLDLSGN 610

Query:   429 NISGSLPSCY-DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVD 487
              +SG LPS   + +   ++ L  N   G L      N     ILDL  N L+G+IP  V+
Sbjct:   611 LLSGDLPSSVVNSMYGIKIFLHNNSFTGPLPVTLLENAY---ILDLRNNKLSGSIPQFVN 667

Query:   488 GLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGHIPSCFDN--TTLHE---- 541
                ++  L+L  NNL G +P                   +G IP C ++  T L E    
Sbjct:   668 -TGKMITLLLRGNNLTGSIPRKLCDLTSIRLLDLSDNKLNGVIPPCLNHLSTELGEGIGL 726

Query:   542 -----RYNNGSSLQP--FETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS 594
                    + G SLQ   + ++F++   M       ++   +F  K    ++ G     + 
Sbjct:   727 SGFSQEISFGDSLQMEFYRSTFLVDEFMLYYDSTYMIVEIEFAAKQRYDSFSGGTLDYMY 786

Query:   595 GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK 654
             GLDLS N L G IP ++G+L+K++ LNLS N L+  IP+ FS L++IESLDLSYN L   
Sbjct:   787 GLDLSSNELSGVIPAELGDLSKLRALNLSRNLLSSSIPANFSKLKDIESLDLSYNMLQGN 846

Query:   655 IPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLP-ICISPTT 713
             IP+QL  L +LAVF+V++NNLSG IP+   QF TFN++SY GNP LCG P    C     
Sbjct:   847 IPHQLTNLTSLAVFNVSFNNLSGIIPQ-GGQFNTFNDNSYLGNPLLCGTPTDRSCEGKKN 905

Query:   714 MPEASPSNE------GDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVE 767
               EA    E       D   IDM + + T  ++Y I + GI+ ++  +  WRR W  +V+
Sbjct:   906 TKEADNGGEEEEEDDDDEAAIDMVVLYWTTGSTYAIALIGILVLMCFDCPWRRTWLCIVD 965

Query:   768 MWTTS 772
              +  S
Sbjct:   966 AFIAS 970

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 853 (305.3 bits), Expect = 3.0e-85, P = 3.0e-85
 Identities = 241/730 (33%), Positives = 339/730 (46%)

Query:    67 QGLCPLVHLQELHMADNDLRGSLPW-CLANMTSLRILDVXXXXXXXXXXXXPLIHLTSIE 125
             Q L  L++L+ L +A N + G +P      + +LR LD+             L  L  + 
Sbjct:   215 QELQNLINLEVLGLAQNHVDGPIPIEVFCKLKNLRDLDLKGNHFVGQIPLC-LGSLKKLR 273

Query:   126 DLILSDNHFQ--IPISLEPLFNHSRLKIFDXXXXXXXXXXXXSHSLTTPNFQLQSLLLSS 183
              L LS N     +P S   L +   L + D            ++ LT   F +     S 
Sbjct:   274 VLDLSSNQLSGDLPSSFSSLESLEYLSLSDNNFDGSFSLNPLTN-LTNLKFVVVLRFCSL 332

Query:   184 GYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLP 243
                     P FL  Q  L  V LS   ++   P WLL NN +L  L L N+S    F +P
Sbjct:   333 E-----KIPSFLLYQKKLRLVDLSSNNLSGNIPTWLLTNNPELEVLQLQNNSFT-IFPIP 386

Query:   244 IHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLD 303
                H  L++ D S NN  G  P ++   L  L   N S N   G  P+S G M  + FLD
Sbjct:   387 TMVHN-LQIFDFSANNI-GKFPDKMDHALPNLVRLNGSNNGFQGYFPTSIGEMKNISFLD 444

Query:   304 LSNNQLTGEIPEHLAMGCVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIP 363
             LS N  +G++P     GCV             G    R  N  +L  L+++ N F G I 
Sbjct:   445 LSYNNFSGKLPRSFVTGCVSIMFLKLSHNKFSGRFLPRETNFPSLDVLRMDNNLFTGNIG 504

Query:   364 QSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQIL 423
               LS  + L+ L +SNN LSG IPRWL     L ++++  N +EG IP     +  L  L
Sbjct:   505 GGLSNSTMLRILDMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGMPFLSFL 564

Query:   424 DISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP 483
             D+S N  SG+LPS  D      + L  N   G + + T     ++ ILDL  N L+G+IP
Sbjct:   565 DLSGNQFSGALPSHVDSELGIYMFLHNNNFTGPIPD-TLLK--SVQILDLRNNKLSGSIP 621

Query:   484 DRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGHIPSCFDNTTLHERY 543
              + D    ++ L+L  NNL G +P                   +G IPSC  N +     
Sbjct:   622 -QFDDTQSINILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCLSNLSFGRLQ 680

Query:   544 NNGSSLQ--P--FETSF--------VIMGGMDVDPKKQILESFDFTTKSITYTYQGR--- 588
              +  +L   P   +TS          ++  ++VD          F  K    +Y GR   
Sbjct:   681 EDAMALNIPPSFLQTSLEMELYKSTFLVDKIEVDRSTYQETEIKFAAKQRYDSYSGRSEF 740

Query:   589 ---VPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLD 645
                +  L+ G+DLS N L G IP ++G+L K++TLNLSHN+L G IPS+FS L ++ESLD
Sbjct:   741 SEGILRLMYGMDLSNNELSGVIPTELGDLLKLRTLNLSHNSLLGSIPSSFSKLIDVESLD 800

Query:   646 LSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL 705
             LS+N L   IP  L  L +LAVF V+ NNLSG IP+   QF TF E SY GNP LCGPP 
Sbjct:   801 LSHNMLQGSIPQLLSSLTSLAVFDVSSNNLSGIIPQ-GRQFNTFEEESYLGNPLLCGPPT 859

Query:   706 PICISPTTMPEASPSN---EGDNNLIDMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRW 762
                      PE + +    E D   IDM +F+ +  + YV  + G++ ++  +  WRR W
Sbjct:   860 SRSCETNKSPEEADNGQEEEDDKAAIDMMVFYFSTASIYVTALIGVLVLMCFDCPWRRAW 919

Query:   763 FYLVEMWTTS 772
               +V+ +  S
Sbjct:   920 LRIVDAFIAS 929

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
 Identities = 201/584 (34%), Positives = 298/584 (51%)

Query:   192 PKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLR 251
             P FL  Q +L  V LS  +++   P WLLENN +L  L L N+S    F++P   H  L+
Sbjct:   335 PNFLMYQKNLHVVDLSGNRISGIIPTWLLENNPELEVLQLKNNSFT-IFQMPTSVHN-LQ 392

Query:   252 LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTG 311
             +LD S+NN  G  P   G +L  L   N S N   G+ PSS G M  + FLDLS N L+G
Sbjct:   393 VLDFSENNIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMYNISFLDLSYNNLSG 452

Query:   312 EIPEHLAMGCVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSS 371
             E+P+     C              GH   R  N T+LI L++  N F G+I   L     
Sbjct:   453 ELPQSFVSSCFSLSILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTGKIGVGLLTLVD 512

Query:   372 LQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS 431
             L  L +SNN L G++P  L     L  + +  N + G +P     + +  +L + +NN +
Sbjct:   513 LCILDMSNNFLEGELPPLLLVFEYLNFLDLSGNLLSGALP---SHVSLDNVLFLHNNNFT 569

Query:   432 GSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQ 491
             G +P  +    I+ + L  N L G + +  F +   +  L L  N L G IP  +   S+
Sbjct:   570 GPIPDTF-LGSIQILDLRNNKLSGNIPQ--FVDTQDISFLLLRGNSLTGYIPSTLCEFSK 626

Query:   492 LSYLILAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGHIPSCFDNTTLHERYNNGSSLQP 551
             +  L L+ N L G +P                   + ++    ++  L   Y +   ++ 
Sbjct:   627 MRLLDLSDNKLNGFIP--SCFNNLSFGLARKEEITNYYVAVALESFYLGF-YKSTFVVEN 683

Query:   552 FETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI 611
             F   +      ++D K    + +D    +  ++ +G + S+  GLDLS N L G IP ++
Sbjct:   684 FRLDY--SNYFEIDVKFATKQRYDSYIGAFQFS-EGTLNSMY-GLDLSSNELSGVIPAEL 739

Query:   612 GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 671
             G+L K++ LNLSHN L+  IP +FS L++IESLDLSYN L   IP+QL  L +LA+F+V+
Sbjct:   740 GDLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDLSYNMLQGSIPHQLTNLTSLAIFNVS 799

Query:   672 YNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPI-CISPTTMPE-ASPSNEGDNNL-I 728
             YNNLSG IP+   QF TF+E+SY GNP LCGPP    C +     E A+   E D  + I
Sbjct:   800 YNNLSGIIPQ-GKQFNTFDENSYLGNPLLCGPPTDTSCETKKNSEENANGGEEDDKEVAI 858

Query:   729 DMDIFFITFTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMWTTS 772
             DM +F+ +   +YV  + GI+ ++ V+  WRR W  LV+ +  S
Sbjct:   859 DMLVFYWSTAGTYVTALIGILVLMCVDCSWRRAWLRLVDAFIAS 902

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
 Identities = 197/634 (31%), Positives = 297/634 (46%)

Query:    64 TLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVXXXXXXXXXXXXPLIHLTS 123
             ++  G+C L ++QEL ++ N L G LP CL ++T LR+LD+             L  L S
Sbjct:   235 SIQSGICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSS-LGSLQS 293

Query:   124 IEDLILSDNHFQIPISLEPLFNHSRLKIFDXXXXXXXXXXXXSHSLTTPNFQLQSLLLSS 183
             +E L L DN F+   S   L N S L +              S S   P FQL  + L S
Sbjct:   294 LEYLSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVL-SESSWKPKFQLSVIALRS 352

Query:   184 GYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLP 243
                + +  P FL +Q DL +V LS   ++ + P+WLL NNTKL+ L L N+ L   F++P
Sbjct:   353 CNMEKV--PHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQNN-LFTSFQIP 409

Query:   244 IHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLD 303
               +H  L  LDVS N+F    P  IG I   L   N S N    ++PSS GNMN +Q++D
Sbjct:   410 KSAHNLL-FLDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMD 468

Query:   304 LSNNQLTGEIPEHLAMGCVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIP 363
             LS N   G +P     GC              G +F  + N TN++ L ++ N F G+I 
Sbjct:   469 LSRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIG 528

Query:   364 QSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQIL 423
             Q L    +L+ L +SNN+L+G IP W+G L  L  +++  N ++G IP+       LQ+L
Sbjct:   529 QGLRSLINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLL 588

Query:   424 DISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP 483
             D+S N++SG +P  +D      + L  N L G + +    N   + ILDL  N  +G IP
Sbjct:   589 DLSANSLSGVIPPQHDSRNGVVLLLQDNKLSGTIPDTLLAN---VEILDLRNNRFSGKIP 645

Query:   484 DRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGHIPSCFDNTTLHERY 543
             + ++ +  +S L+L  NN  G++P                   +G IPSC  NT+    +
Sbjct:   646 EFIN-IQNISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTS----F 700

Query:   544 NNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITY-----TYQGRVPSLLSGLDL 598
               G     ++  F I    DV     + + F        Y     T         +    
Sbjct:   701 GFGKECTSYDYDFGISFPSDVFNGFSLHQDFSSNKNGGIYFKSLLTLDPLSMDYKAATQT 760

Query:   599 SCNRLIGHIPPQI--GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIP 656
                    H       GNL  +  ++LS N L+G IP  F  L  + +L+LS+N LS  IP
Sbjct:   761 KIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIP 820

Query:   657 YQLVELNTLAVFSVAYNNLSGKIPERAAQFATFN 690
               +  +  +  F +++N L G+IP +  +  + +
Sbjct:   821 KSISSMEKMESFDLSFNRLQGRIPSQLTELTSLS 854

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 608 (219.1 bits), Expect = 1.9e-62, Sum P(2) = 1.9e-62
 Identities = 188/647 (29%), Positives = 283/647 (43%)

Query:    83 NDLRGSLPWCLANMTSLRILDVXXXXXXXXXXXXPLIHLTSIEDLILSDNHF--QIPISL 140
             N+L G +P CL ++  L++  V             +  L ++ DL LS N    +IP   
Sbjct:   178 NNLTGKIPECLGDLVHLQMF-VAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDF 236

Query:   141 EPLFNHSRLKIFDXXXXXXXXXXXXSHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHD 200
               L N   L + +            + S       L  L L      G   P  L N   
Sbjct:   237 GNLLNLQSLVLTENLLEGDIPAEIGNCS------SLVQLELYDNQLTG-KIPAELGNLVQ 289

Query:   201 LEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNF 260
             L+ +R+   K+    P+ L    T+L  L L  + LVGP    I   + L +L +  NNF
Sbjct:   290 LQALRIYKNKLTSSIPSSLFRL-TQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNF 348

Query:   261 QGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMG 320
              G  P  I + L  LTV  +  N + G +P+  G +  L+ L   +N LTG IP  ++  
Sbjct:   349 TGEFPQSITN-LRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSIS-N 406

Query:   321 CVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNN 380
             C              G +  R F   NL ++ +  NHF GEIP  +  CS+L+ L +++N
Sbjct:   407 CTGLKLLDLSHNQMTGEI-PRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADN 465

Query:   381 SLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLP-SCYD 439
             +L+G +   +G L  LR + +  N + GPIP E   L+ L IL +  N  +G +P    +
Sbjct:   466 NLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSN 525

Query:   440 FVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAH 499
                ++ + +  N L G + E   F+   L +LDLS N  +G IP     L  L+YL L  
Sbjct:   526 LTLLQGLRMYSNDLEGPIPE-EMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQG 584

Query:   500 NNLEGEVPIXXXXXXXXXXXXXXXXXXHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIM 559
             N   G +P                    G IP       L     N      F  + ++ 
Sbjct:   585 NKFNGSIPASLKSLSLLNTFDISDNLLTGTIPG-----ELLASLKNMQLYLNFSNN-LLT 638

Query:   560 GGMDVD-PKKQILESFDFTTKSITYTYQGRVPSLLSG------LDLSCNRLIGHIPPQI- 611
             G +  +  K ++++  D +       + G +P  L        LD S N L GHIP ++ 
Sbjct:   639 GTIPKELGKLEMVQEIDLSNN----LFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVF 694

Query:   612 GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 671
               +  I +LNLS N+ +G IP +F N+ ++ SLDLS N L+ +IP  L  L+TL    +A
Sbjct:   695 QGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLA 754

Query:   672 YNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPICISPTTMPEAS 718
              NNL G +PE    F   N S   GN  LCG   P+   P T+ + S
Sbjct:   755 SNNLKGHVPESGV-FKNINASDLMGNTDLCGSKKPL--KPCTIKQKS 798

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 553 (199.7 bits), Expect = 1.2e-54, Sum P(2) = 1.2e-54
 Identities = 179/643 (27%), Positives = 290/643 (45%)

Query:    72 LVHLQELHMADNDLRGSLPWCLANMTSLRILDVXXXXXXXXXXXXPLIHLTSIEDLILSD 131
             L +LQ L++ DN   G +P  L ++ S++ L++             L  L +++ L LS 
Sbjct:   239 LKNLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKR-LTELANLQTLDLSS 297

Query:   132 NHFQIPISLEPLFNHSRLKIFDXXXXXXXXXXXXSHSLTTPNFQLQSLLLSSGYRDGITF 191
             N+    I  E  +  ++L+                 ++ + N  L+ L LS     G   
Sbjct:   298 NNLTGVIH-EEFWRMNQLEFL--VLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSG-EI 353

Query:   192 PKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLR 251
             P  + N   L+ + LS+  +  + P+ L +   +L  L L N+SL G     I +   L+
Sbjct:   354 PAEISNCQSLKLLDLSNNTLTGQIPDSLFQL-VELTNLYLNNNSLEGTLSSSISNLTNLQ 412

Query:   252 LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTG 311
                +  NN +G +P EIG  L +L +  +  N   G +P   GN   LQ +D   N+L+G
Sbjct:   413 EFTLYHNNLEGKVPKEIG-FLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSG 471

Query:   312 EIPEHLAMGCVXXXXXXXXXXXXEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSS 371
             EIP  +                  G++ +   N   +  + L  N   G IP S    ++
Sbjct:   472 EIPSSIGR-LKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTA 530

Query:   372 LQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPI-PLEFCQLRILQILDISDNNI 430
             L+   + NNSL G +P  L NL  L  I    N   G I PL  C        D+++N  
Sbjct:   531 LELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPL--CGSSSYLSFDVTENGF 588

Query:   431 SGSLP-SCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGL 489
              G +P        ++++ L KN   G++   TF     L +LD+S N L+G IP  +   
Sbjct:   589 EGDIPLELGKSTNLDRLRLGKNQFTGRIPR-TFGKISELSLLDISRNSLSGIIPVELGLC 647

Query:   490 SQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGHIPS-CFDNTTLHERYNNGSS 548
              +L+++ L +N L G +P                    G +P+  F  T +   + +G+S
Sbjct:   648 KKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNS 707

Query:   549 LQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSL--LSGLDLSCNRLIGH 606
             L       +  G +      Q L + +     ++      +  L  L  L LS N L G 
Sbjct:   708 LNGSIPQEI--GNL------QALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGE 759

Query:   607 IPPQIGNLTKIQT-LNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTL 665
             IP +IG L  +Q+ L+LS+NN  G IPST S L  +ESLDLS+N+L  ++P Q+ ++ +L
Sbjct:   760 IPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSL 819

Query:   666 AVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPIC 708
                +++YNNL GK+ +   QF+ +   ++ GN  LCG PL  C
Sbjct:   820 GYLNLSYNNLEGKLKK---QFSRWQADAFVGNAGLCGSPLSHC 859

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2167948 ERL1 "ERECTA-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 541 (195.5 bits), Expect = 2.4e-51, P = 2.4e-51
 Identities = 163/482 (33%), Positives = 232/482 (48%)

Query:   226 LRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNAL 285
             L+ + L  + L G     I +   L  LD+S+N   G IP  I   L +L   N+  N L
Sbjct:    97 LQSIDLQGNKLAGQIPDEIGNCASLVYLDLSENLLYGDIPFSISK-LKQLETLNLKNNQL 155

Query:   286 DGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVXXXXXXXXXXXXEGHMFSRNFNL 345
              G +P++   +  L+ LDL+ N LTGEI   L    V             G + S    L
Sbjct:   156 TGPVPATLTQIPNLKRLDLAGNHLTGEISRLLYWNEVLQYLGLRGNMLT-GTLSSDMCQL 214

Query:   346 TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNH 405
             T L +  + GN+  G IP+S+  C+S Q L +S N ++G+IP  +G L V   + +  N 
Sbjct:   215 TGLWYFDVRGNNLTGTIPESIGNCTSFQILDISYNQITGEIPYNIGFLQVAT-LSLQGNR 273

Query:   406 IEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIE-QVHLSKNMLHGQLKEGTFFN 464
             + G IP     ++ L +LD+SDN + G +P     +    +++L  NML G +      N
Sbjct:   274 LTGRIPEVIGLMQALAVLDLSDNELVGPIPPILGNLSFTGKLYLHGNMLTGPIPS-ELGN 332

Query:   465 CLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXXXX 524
                L  L L+ N L G IP  +  L QL  L LA+N L G +P                 
Sbjct:   333 MSRLSYLQLNDNKLVGTIPPELGKLEQLFELNLANNRLVGPIPSNISSCAALNQFNVHGN 392

Query:   525 XXHGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKS 580
                G IP  F N    T L+   NN     P E   +I   +D    K  L   +F+  S
Sbjct:   393 LLSGSIPLAFRNLGSLTYLNLSSNNFKGKIPVELGHII--NLD----KLDLSGNNFSG-S 445

Query:   581 ITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRN 640
             I  T  G +  LL  L+LS N L G +P + GNL  IQ +++S N L+G IP+    L+N
Sbjct:   446 IPLTL-GDLEHLLI-LNLSRNHLSGQLPAEFGNLRSIQMIDVSFNLLSGVIPTELGQLQN 503

Query:   641 IESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFL 700
             + SL L+ NKL  KIP QL    TL   +V++NNLSG +P     F+ F  +S+ GNP+L
Sbjct:   504 LNSLILNNNKLHGKIPDQLTNCFTLVNLNVSFNNLSGIVPPMK-NFSRFAPASFVGNPYL 562

Query:   701 CG 702
             CG
Sbjct:   563 CG 564

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010103 "stomatal complex morphogenesis" evidence=IGI;RCA

GO:0009553 "embryo sac development" evidence=IGI

GO:0048481 "ovule development" evidence=IGI;RCA

GO:0016020 "membrane" evidence=IDA

GO:0001708 "cell fate specification" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	788
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-61
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-49
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-48
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-35
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-30
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  223 bits (571), Expect = 1e-61
 Identities = 189/634 (29%), Positives = 285/634 (44%), Gaps = 99/634 (15%)

Query: 74  HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNH 133
            +  + ++  ++ G +   +  +  ++ +++S+NQL G I        +S+  L LS+N+
Sbjct: 70  RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN 129

Query: 134 FQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPK 193
           F   I    + N   L+  D  NN ++ EI                       D  +F  
Sbjct: 130 FTGSIPRGSIPN---LETLDLSNNMLSGEI---------------------PNDIGSFSS 165

Query: 194 FLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLL 253
                  L+ + L    +  + PN L  N T L  L+L ++ LVG     +   K L+ +
Sbjct: 166 -------LKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217

Query: 254 DVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEI 313
            +  NN  G IP EIG  L+ L   ++  N L G IPSS GN+  LQ+L L  N+L+G I
Sbjct: 218 YLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276

Query: 314 PEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQ 373
           P  +      L SL LS+N+L G +      L NL  L L  N+F G+IP +L+    LQ
Sbjct: 277 PPSI-FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQ 335

Query: 374 GLFLSNNSLSGKIPRWLG---NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNI 430
            L L +N  SG+IP+ LG   NLTVL    +  N++ G IP   C    L  L +  N++
Sbjct: 336 VLQLWSNKFSGEIPKNLGKHNNLTVLD---LSTNNLTGEIPEGLCSSGNLFKLILFSNSL 392

Query: 431 SGSLP-SCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLM-ILDLSYNHLNGNIPDRVDG 488
            G +P S      + +V L  N   G+L     F  L L+  LD+S N+L G I  R   
Sbjct: 393 EGEIPKSLGACRSLRRVRLQDNSFSGELPSE--FTKLPLVYFLDISNNNLQGRINSRKWD 450

Query: 489 LSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSS 548
           +  L  L LA N   G +P       +L+ LDLS N   G +P                 
Sbjct: 451 MPSLQMLSLARNKFFGGLP-DSFGSKRLENLDLSRNQFSGAVPRKL-------------- 495

Query: 549 LQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIP 608
                                                 G +  L+  L LS N+L G IP
Sbjct: 496 --------------------------------------GSLSELMQ-LKLSENKLSGEIP 516

Query: 609 PQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVF 668
            ++ +  K+ +L+LSHN L+G IP++FS +  +  LDLS N+LS +IP  L  + +L   
Sbjct: 517 DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV 576

Query: 669 SVAYNNLSGKIPERAAQFATFNESSYEGNPFLCG 702
           ++++N+L G +P   A F   N S+  GN  LCG
Sbjct: 577 NISHNHLHGSLPSTGA-FLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  187 bits (477), Expect = 2e-49
 Identities = 172/598 (28%), Positives = 257/598 (42%), Gaps = 144/598 (24%)

Query: 40  IIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSL 99
           I   S+P+++ L LSN+ +S     +   +     L+ L +  N L G +P  L N+TSL
Sbjct: 134 IPRGSIPNLETLDLSNNMLSGE---IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSL 190

Query: 100 RILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHF--QIPISLEPLFNHSRLKIFDAENN 157
             L ++SNQL+G I    L  + S++ + L  N+   +IP  +  L   + L   D   N
Sbjct: 191 EFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSGEIPYEIGGL---TSLNHLDLVYN 246

Query: 158 EINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPN 217
            +   I                            P  L N  +L+Y+ L   K++   P 
Sbjct: 247 NLTGPI----------------------------PSSLGNLKNLQYLFLYQNKLSGPIPP 278

Query: 218 WLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTV 277
            +  +  KL  L L ++SL G     +   + L +L +  NNF G IP+ +   L RL V
Sbjct: 279 SIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS-LPRLQV 336

Query: 278 FNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGH 337
             +  N   G IP + G  N L  LDLS N LTGEIPE L   C S            G+
Sbjct: 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL---CSS------------GN 381

Query: 338 MFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLR 397
           +F           L L  N   GEIP+SL  C SL+ + L +NS SG++P          
Sbjct: 382 LFK----------LILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS--------- 422

Query: 398 HIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPS-CYDFVCIEQVHLSKNMLHGQ 456
                          EF +L ++  LDIS+NN+ G + S  +D   ++ + L++N   G 
Sbjct: 423 ---------------EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG 467

Query: 457 LKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQL 516
           L +   F    L  LDLS N  +G +P ++  LS+L  L L+ N L GE+P +L    +L
Sbjct: 468 LPD--SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL 525

Query: 517 QLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDF 576
             LDLS+N L G IP+ F                   +   ++  +D             
Sbjct: 526 VSLDLSHNQLSGQIPASF-------------------SEMPVLSQLD------------- 553

Query: 577 TTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPST 634
                                LS N+L G IP  +GN+  +  +N+SHN+L G +PST
Sbjct: 554 ---------------------LSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  183 bits (467), Expect = 4e-48
 Identities = 145/443 (32%), Positives = 209/443 (47%), Gaps = 53/443 (11%)

Query: 273 SRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN 332
           SR+   ++S   + G I S+   + ++Q ++LSNNQL+G IP+ +     SLR L LSNN
Sbjct: 69  SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128

Query: 333 NLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGN 392
           N  G +  R   + NL  L L  N   GEIP  +   SSL+ L L  N L GKIP  L N
Sbjct: 129 NFTGSI-PRGS-IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN 186

Query: 393 LTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNM 452
           LT L  + +  N + G IP E  Q++ L+ + +  NN+SG +P         ++      
Sbjct: 187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY--------EI------ 232

Query: 453 LHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCR 512
             G L         +L  LDL YN+L G IP  +  L  L YL L  N L G +P  +  
Sbjct: 233 --GGLT--------SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS 282

Query: 513 LNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFV--IMGGMDVDPKKQI 570
           L +L  LDLS+N+L G IP       L  +  N   L  F  +F   I   +   P+ Q+
Sbjct: 283 LQKLISLDLSDNSLSGEIPE------LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV 336

Query: 571 LESFDFTTKSITYTYQGRVP------SLLSGLDLSCNRLIGHIPPQI---GNLTKIQTLN 621
           L+ +       +  + G +P      + L+ LDLS N L G IP  +   GNL K   L 
Sbjct: 337 LQLW-------SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFK---LI 386

Query: 622 LSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE 681
           L  N+L G IP +    R++  + L  N  S ++P +  +L  +    ++ NNL G+I  
Sbjct: 387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS 446

Query: 682 RAAQFATFNESSYEGNPFLCGPP 704
           R     +    S   N F  G P
Sbjct: 447 RKWDMPSLQMLSLARNKFFGGLP 469

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  143 bits (363), Expect = 3e-35
 Identities = 109/361 (30%), Positives = 170/361 (47%), Gaps = 71/361 (19%)

Query: 324 LRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS 383
           L S   S N+   ++ + N +    +W  +  N+            S +  + LS  ++S
Sbjct: 34  LLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNS-----------SRVVSIDLSGKNIS 82

Query: 384 GKIPRWLGNLTVLRHIIMPKNHIEGPIPLE-FCQLRILQILDISDNNISGSLPSCYDFVC 442
           GKI   +  L  ++ I +  N + GPIP + F     L+ L++S+NN +GS+P       
Sbjct: 83  GKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIP-N 141

Query: 443 IEQVHLSKNMLHGQLKE--GTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHN 500
           +E + LS NML G++    G+F +   L +LDL  N L G IP+ +  L+ L +L LA N
Sbjct: 142 LETLDLSNNMLSGEIPNDIGSFSS---LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198

Query: 501 NLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMG 560
            L G++P +L ++  L+ + L  NNL G I                    P+E     +G
Sbjct: 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEI--------------------PYE-----IG 233

Query: 561 GMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTL 620
           G+                            + L+ LDL  N L G IP  +GNL  +Q L
Sbjct: 234 GL----------------------------TSLNHLDLVYNNLTGPIPSSLGNLKNLQYL 265

Query: 621 NLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIP 680
            L  N L+GPIP +  +L+ + SLDLS N LS +IP  +++L  L +  +  NN +GKIP
Sbjct: 266 FLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325

Query: 681 E 681
            
Sbjct: 326 V 326

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  128 bits (322), Expect = 3e-30
 Identities = 104/336 (30%), Positives = 150/336 (44%), Gaps = 64/336 (19%)

Query: 361 EIPQSLSKCSSLQG--LFLSNNSLSGKIPRWLG----NLTVLRHIIMPKNHIEGPIPLEF 414
           E+   LS  SS+     +LSN + S  +  W G    N + +  I +   +I G I    
Sbjct: 30  ELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAI 89

Query: 415 CQLRILQILDISDNNISGSLPSCYDFVC--IEQVHLSKNMLHGQLKEGTFFNCLTLMILD 472
            +L  +Q +++S+N +SG +P         +  ++LS N   G +  G+  N   L  LD
Sbjct: 90  FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN---LETLD 146

Query: 473 LSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPS 532
           LS N L+G IP+ +   S L  L L  N L G++P  L  L  L+ L L++N L G IP 
Sbjct: 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP- 205

Query: 533 CFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSL 592
                   E                 +G M                KS+ + Y G     
Sbjct: 206 -------RE-----------------LGQM----------------KSLKWIYLGY---- 221

Query: 593 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 652
                   N L G IP +IG LT +  L+L +NNL GPIPS+  NL+N++ L L  NKLS
Sbjct: 222 --------NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273

Query: 653 WKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFAT 688
             IP  +  L  L    ++ N+LSG+IPE   Q   
Sbjct: 274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN 309

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 83.7 bits (207), Expect = 1e-16
 Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 8/122 (6%)

Query: 592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 651
            + GL L    L G IP  I  L  +Q++NLS N++ G IP +  ++ ++E LDLSYN  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 652 SWKIPYQLVELNTLAVFSVAYNNLSGKIPE----RAAQFATFNESSYEGNPFLCG-PPLP 706
           +  IP  L +L +L + ++  N+LSG++P     R    A+FN   +  N  LCG P L 
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN---FTDNAGLCGIPGLR 535

Query: 707 IC 708
            C
Sbjct: 536 AC 537

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.1 bits (156), Expect = 2e-10
 Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 1/89 (1%)

Query: 229 LSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGS 288
           L L N  L G     I   + L+ +++S N+ +G+IP  +G I S L V ++S N+ +GS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS-LEVLDLSYNSFNGS 481

Query: 289 IPSSFGNMNFLQFLDLSNNQLTGEIPEHL 317
           IP S G +  L+ L+L+ N L+G +P  L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.5 bits (152), Expect = 5e-10
 Identities = 33/86 (38%), Positives = 49/86 (56%)

Query: 351 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPI 410
           L L+     G IP  +SK   LQ + LS NS+ G IP  LG++T L  + +  N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 411 PLEFCQLRILQILDISDNNISGSLPS 436
           P    QL  L+IL+++ N++SG +P+
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.5 bits (152), Expect = 6e-10
 Identities = 38/100 (38%), Positives = 58/100 (58%), Gaps = 1/100 (1%)

Query: 298 FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNH 357
           F+  L L N  L G IP  ++     L+S+ LS N++ G++     ++T+L  L L  N 
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS 477

Query: 358 FVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLR 397
           F G IP+SL + +SL+ L L+ NSLSG++P  LG   + R
Sbjct: 478 FNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHR 517

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 1e-09
 Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 253 LDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGE 312
           L +     +G IP +I   L  L   N+S N++ G+IP S G++  L+ LDLS N   G 
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 313 IPEHLAMGCVSLRSLALSNNNLEG 336
           IPE L     SLR L L+ N+L G
Sbjct: 482 IPESLGQ-LTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.5 bits (139), Expect = 2e-08
 Identities = 34/85 (40%), Positives = 45/85 (52%)

Query: 327 LALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKI 386
           L L N  L G + +    L +L  + L GN   G IP SL   +SL+ L LS NS +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 387 PRWLGNLTVLRHIIMPKNHIEGPIP 411
           P  LG LT LR + +  N + G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.7 bits (137), Expect = 3e-08
 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 24/105 (22%)

Query: 406 IEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNC 465
           + G IP +  +LR LQ +++S N+I G++P                         +  + 
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPP------------------------SLGSI 465

Query: 466 LTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQL 510
            +L +LDLSYN  NG+IP+ +  L+ L  L L  N+L G VP  L
Sbjct: 466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.2 bits (133), Expect = 1e-07
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 72  LVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSD 131
           L HLQ ++++ N +RG++P  L ++TSL +LD+S N   GSI  S L  LTS+  L L+ 
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNG 499

Query: 132 NHF--QIPISL 140
           N    ++P +L
Sbjct: 500 NSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 4e-07
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 471 LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI 530
           L L    L G IP+ +  L  L  + L+ N++ G +P  L  +  L++LDLS N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 531 PSCFDNTTLHERYN-NGSSL 549
           P      T     N NG+SL
Sbjct: 483 PESLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.1 bits (125), Expect = 9e-07
 Identities = 25/73 (34%), Positives = 43/73 (58%)

Query: 468 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 527
           L  ++LS N + GNIP  +  ++ L  L L++N+  G +P  L +L  L++L+L+ N+L 
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 528 GHIPSCFDNTTLH 540
           G +P+      LH
Sbjct: 504 GRVPAALGGRLLH 516

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.8 bits (107), Expect = 2e-06
 Identities = 27/57 (47%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 596 LDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 651
           LDLS NRL   IP      L  ++ L+LS NNL    P  FS L ++ SLDLS N L
Sbjct: 5   LDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.2 bits (120), Expect = 4e-06
 Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 24/116 (20%)

Query: 374 GLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGS 433
           GL L N  L G IP  +  L  L+ I +  N I G IP     +  L++LD+S N+ +GS
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 434 LPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGL 489
           +P                   GQL         +L IL+L+ N L+G +P  + G 
Sbjct: 482 IPESL----------------GQLT--------SLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 28/60 (46%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 468 LMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 526
           L  LDLS N L   IPD    GL  L  L L+ NNL    P     L  L+ LDLS NNL
Sbjct: 2   LKSLDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 5e-05
 Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 274 RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN 333
            L   ++S N L      +F  +  L+ LDLS N LT  I      G  SLRSL LS NN
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 334 L 334
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.3 bits (107), Expect = 8e-05
 Identities = 63/219 (28%), Positives = 108/219 (49%), Gaps = 10/219 (4%)

Query: 220 LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFN 279
           L   T L  L L N+++     L       L+ LD+S N  +  +P  + + L  L   +
Sbjct: 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRN-LPNLKNLD 169

Query: 280 ISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMF 339
           +S N L   +P    N++ L  LDLS N+++ ++P  + +   +L  L LSNN++   + 
Sbjct: 170 LSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL-LSALEELDLSNNSIIELLS 226

Query: 340 SRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHI 399
           S + NL NL  L+L  N  + ++P+S+   S+L+ L LSNN +S      LG+LT LR +
Sbjct: 227 SLS-NLKNLSGLELSNN-KLEDLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLREL 282

Query: 400 IMPKNHIEGPIPLEF-CQLRILQILDISDNNISGSLPSC 437
            +  N +   +PL     L +  +L++     +  L   
Sbjct: 283 DLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLN 321

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 4e-04
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 225 KLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNA 284
            L+ ++L  +S+ G     + S   L +LD+S N+F G IP  +G  L+ L + N++ N+
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNLNGNS 501

Query: 285 LDGSIPSSFG 294
           L G +P++ G
Sbjct: 502 LSGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 16/60 (26%), Positives = 25/60 (41%)

Query: 347 NLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHI 406
           NL  L L  N        +     +L+ L LS N+L+   P     L  LR + +  N++
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 249 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ 308
            L+ LD+S N     IP      L  L V ++S N L    P +F  +  L+ LDLS N 
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 309 L 309
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 299 LQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG---HMFSRNFNLTNLIWLQLEG 355
           L+ LDLSNN+LT  IP+    G  +L+ L LS NNL       FS    L +L  L L G
Sbjct: 2   LKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFS---GLPSLRSLDLSG 57

Query: 356 NHF 358
           N+ 
Sbjct: 58  NNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.1 bits (96), Expect = 0.002
 Identities = 66/228 (28%), Positives = 102/228 (44%), Gaps = 23/228 (10%)

Query: 464 NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSN 523
           N L L  LDL+ N L  NI   +  L+ L+ L L +NN+    P+     + L+ LDLS+
Sbjct: 91  NLLPLPSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD 149

Query: 524 NNLHGHIPSCFDNTTLHER----YNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTK 579
           N +   +PS   N    +     +N+ S L    +                L + D +  
Sbjct: 150 NKI-ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLS------------NLSNLNNLDLSGN 196

Query: 580 SIT-YTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNL 638
            I+    +  + S L  LDLS N +I  +   + NL  +  L LS+N L   +P +  NL
Sbjct: 197 KISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNL 254

Query: 639 RNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQF 686
            N+E+LDLS N++S      L  L  L    ++ N+LS  +P  A   
Sbjct: 255 SNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALPLIALLL 300

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 20/60 (33%), Positives = 31/60 (51%)

Query: 616 KIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNL 675
            +++L+LS+N L       F  L N++ LDLS N L+   P     L +L    ++ NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	788
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.93
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.72
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.69
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.58
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.56
PLN03150	623	hypothetical protein; Provisional	99.47
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.13
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.13
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.13
PLN03150	623	hypothetical protein; Provisional	99.12
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.09
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.09
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.05
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.05
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.04
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.0
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.99
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.96
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.95
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.84
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.83
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.78
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.7
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.68
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.61
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.59
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.49
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.29
KOG4341	483	consensus F-box protein containing LRR [General fu	98.21
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.2
KOG4341	483	consensus F-box protein containing LRR [General fu	98.18
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.08
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.06
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.06
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.99
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.96
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.96
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.88
PRK15386	426	type III secretion protein GogB; Provisional	97.85
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.83
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.81
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.76
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.74
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.62
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.6
PRK15386	426	type III secretion protein GogB; Provisional	97.35
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.22
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.05
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.89
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.84
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.42
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.05
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.7
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.09
KOG4308	478	consensus LRR-containing protein [Function unknown	92.19
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.16
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	91.93
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	90.7
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.56
smart00370	26	LRR Leucine-rich repeats, outliers.	90.56
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.76
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.48
smart00370	26	LRR Leucine-rich repeats, outliers.	88.48
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.96
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.41
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.01
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	86.64
KOG4308	478	consensus LRR-containing protein [Function unknown	86.17
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	85.94

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=7.8e-60  Score=565.59  Aligned_cols=541  Identities=33%  Similarity=0.497  Sum_probs=389.8

Q ss_pred             CCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCccccCCCCCccEEE
Q 003893           74 HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFD  153 (788)
Q Consensus        74 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~  153 (788)
                      +++.|+|++|.+.+..+..|..+++|++|+|++|.+.+.+|...+..+++|++|++++|.+++.++.   ..+++|++|+
T Consensus        70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~  146 (968)
T PLN00113         70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLD  146 (968)
T ss_pred             cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEE
Confidence            4555555555555555555555555555555555555455542333555555555555555443332   2344555555


Q ss_pred             ccCCccchhhhccccCCCCcccccEEEccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccC
Q 003893          154 AENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVN  233 (788)
Q Consensus       154 l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  233 (788)
                      +++|.+.                            +..|..+..+++|++|++++|.+.+..|..+ .++++|++|++++
T Consensus       147 Ls~n~~~----------------------------~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~  197 (968)
T PLN00113        147 LSNNMLS----------------------------GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLAS  197 (968)
T ss_pred             CcCCccc----------------------------ccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccC
Confidence            5544432                            1233344455556666666665555555543 5566666666666


Q ss_pred             CcccCcCccCccCCCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCcc
Q 003893          234 DSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEI  313 (788)
Q Consensus       234 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~  313 (788)
                      |.+.+..+..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+..|..++.+++|++|++++|.+.+.+
T Consensus       198 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  276 (968)
T PLN00113        198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI  276 (968)
T ss_pred             CCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC
Confidence            6666555556666666666666666666566655544 566666666666666666666666666667776666666556


Q ss_pred             chHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCC
Q 003893          314 PEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNL  393 (788)
Q Consensus       314 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l  393 (788)
                      |..+. .+++|++|++++|.+.+..+..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+
T Consensus       277 p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~  355 (968)
T PLN00113        277 PPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH  355 (968)
T ss_pred             chhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC
Confidence            65554 46666677776666666666666666677777777776666666666667777777777777666666666666


Q ss_pred             CCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCC-CCCcccEEEccCcccccccCcccccccccccEEe
Q 003893          394 TVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCY-DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILD  472 (788)
Q Consensus       394 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  472 (788)
                      ++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+ .+++|+.|++++|.+.+.+|. .+..++.|+.|+
T Consensus       356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~  434 (968)
T PLN00113        356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS-EFTKLPLVYFLD  434 (968)
T ss_pred             CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh-hHhcCCCCCEEE
Confidence            777777777777766666666666777777777777666555433 366777777777777666665 788899999999


Q ss_pred             CCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCc
Q 003893          473 LSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPF  552 (788)
Q Consensus       473 l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (788)
                      +++|.+.+..+..+..+++|+.|++++|++.+..|..+ ..++|+.|++++|++++..|..+..+.              
T Consensus       435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~--------------  499 (968)
T PLN00113        435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLS--------------  499 (968)
T ss_pred             CcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhh--------------
Confidence            99999999888888899999999999999988777765 468999999999999988887776655              


Q ss_pred             ccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCC
Q 003893          553 ETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIP  632 (788)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  632 (788)
                                                             +|+.|++++|.+.+.+|..+..+++|+.|+|++|.+++.+|
T Consensus       500 ---------------------------------------~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  540 (968)
T PLN00113        500 ---------------------------------------ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP  540 (968)
T ss_pred             ---------------------------------------ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC
Confidence                                                   79999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCCCCC
Q 003893          633 STFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPP  704 (788)
Q Consensus       633 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~  704 (788)
                      ..|..+++|++||+++|++++.+|..+..+++|+.+++++|++++.+|.. .++.++....+.|||..|+.+
T Consensus       541 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        541 ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             hhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccccCCc
Confidence            99999999999999999999999999999999999999999999999975 778888889999999999854

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=9.6e-56  Score=530.28  Aligned_cols=520  Identities=31%  Similarity=0.500  Sum_probs=475.9

Q ss_pred             CCCCCEEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCccccCCCCCccEEEccCCccchhhhccccCCCCccc
Q 003893           96 MTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQ  175 (788)
Q Consensus        96 l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  175 (788)
                      ..+++.||+++|.+.+.++. .+..+++|++|++++|++.+.++...+..+++|++|++++|.+.+..            
T Consensus        68 ~~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~------------  134 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKISS-AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSI------------  134 (968)
T ss_pred             CCcEEEEEecCCCccccCCh-HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccccc------------
Confidence            35799999999999988877 89999999999999999988888666679999999999999875322            


Q ss_pred             ccEEEccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCcCEEEc
Q 003893          176 LQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDV  255 (788)
Q Consensus       176 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  255 (788)
                                      |.  ..+++|++|++++|.+++..|..+ +++++|++|++++|.+.+..+..+..+++|++|++
T Consensus       135 ----------------p~--~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  195 (968)
T PLN00113        135 ----------------PR--GSIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL  195 (968)
T ss_pred             ----------------Cc--cccCCCCEEECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence                            11  246789999999999988888875 79999999999999999888889999999999999


Q ss_pred             cCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccC
Q 003893          256 SKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLE  335 (788)
Q Consensus       256 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~  335 (788)
                      ++|.+.+.+|..+.. +++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+. .+++|++|++++|.+.
T Consensus       196 ~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~  273 (968)
T PLN00113        196 ASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLS  273 (968)
T ss_pred             cCCCCcCcCChHHcC-cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh-CCCCCCEEECcCCeee
Confidence            999999888888776 78999999999999999999999999999999999999878887765 6999999999999999


Q ss_pred             ccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhh
Q 003893          336 GHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFC  415 (788)
Q Consensus       336 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  415 (788)
                      +..+..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+.
T Consensus       274 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~  353 (968)
T PLN00113        274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG  353 (968)
T ss_pred             ccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh
Confidence            88888888999999999999999989999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCcEEeccCCcCCCCCCCCC-CCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcE
Q 003893          416 QLRILQILDISDNNISGSLPSCY-DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSY  494 (788)
Q Consensus       416 ~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~  494 (788)
                      .+++|+.|++++|.+.+..+..+ .+++++.|++++|.+.+.+|. .+..+++|+.|++++|++++..|..+..+++|+.
T Consensus       354 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~-~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  432 (968)
T PLN00113        354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK-SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYF  432 (968)
T ss_pred             CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH-HHhCCCCCCEEECcCCEeeeECChhHhcCCCCCE
Confidence            99999999999999988777654 478999999999999888876 8889999999999999999999999999999999


Q ss_pred             EEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccce
Q 003893          495 LILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESF  574 (788)
Q Consensus       495 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  574 (788)
                      |++++|.+++..+..+..+++|+.|++++|++.+..|..+..                                      
T Consensus       433 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~--------------------------------------  474 (968)
T PLN00113        433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS--------------------------------------  474 (968)
T ss_pred             EECcCCcccCccChhhccCCCCcEEECcCceeeeecCccccc--------------------------------------
Confidence            999999999989988899999999999999998777654421                                      


Q ss_pred             EeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCcc
Q 003893          575 DFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK  654 (788)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  654 (788)
                                      ++|+.|++++|++++..|..+..+++|+.|+|++|++.+.+|..+.++++|++|+|++|++++.
T Consensus       475 ----------------~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  538 (968)
T PLN00113        475 ----------------KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ  538 (968)
T ss_pred             ----------------ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCccccc
Confidence                            2799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCCCCC
Q 003893          655 IPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPP  704 (788)
Q Consensus       655 ~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~  704 (788)
                      +|..+..+++|+.|++++|++++.+|..+..+..+..+++++|++.+..+
T Consensus       539 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        539 IPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             CChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence            99999999999999999999999999999999999999999999987544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-41  Score=341.54  Aligned_cols=377  Identities=23%  Similarity=0.243  Sum_probs=274.6

Q ss_pred             CCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceec
Q 003893          274 RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQL  353 (788)
Q Consensus       274 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l  353 (788)
                      .-+.|++++|++....+..|.++++|+.+++.+|.++ .+|.... ....|+.|+|.+|.|+.+....+..++.|+.|||
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~-~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGH-ESGHLEKLDLRHNLISSVTSEELSALPALRSLDL  156 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccc-cccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence            3445566666555555555556666666666666555 5554432 1334566666666655555555555566666666


Q ss_pred             cCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCC
Q 003893          354 EGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGS  433 (788)
Q Consensus       354 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  433 (788)
                      +.|.+..+....|..-.++++|++++|.|+......|..+.+|..|.++.|+++...+..|.++++|+.|+|..|++...
T Consensus       157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence            66666544444555555666666666666655555566666666666666666655555666666666666666665432


Q ss_pred             -CCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccC
Q 003893          434 -LPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCR  512 (788)
Q Consensus       434 -~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  512 (788)
                       ...+.++++|+.|.+..|.+. .+.+++|..+.++++|+|+.|++......++-++++|+.|+++.|.|....++..+.
T Consensus       237 e~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf  315 (873)
T KOG4194|consen  237 EGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF  315 (873)
T ss_pred             hhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence             122233566666666666664 566778999999999999999998777778889999999999999998888888888


Q ss_pred             CCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCC
Q 003893          513 LNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSL  592 (788)
Q Consensus       513 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  592 (788)
                      .++|++|+|++|+++...+..|..+.                                                     .
T Consensus       316 tqkL~~LdLs~N~i~~l~~~sf~~L~-----------------------------------------------------~  342 (873)
T KOG4194|consen  316 TQKLKELDLSSNRITRLDEGSFRVLS-----------------------------------------------------Q  342 (873)
T ss_pred             cccceeEeccccccccCChhHHHHHH-----------------------------------------------------H
Confidence            99999999999999988888877666                                                     7


Q ss_pred             CceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCC---cccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEe
Q 003893          593 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIP---STFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFS  669 (788)
Q Consensus       593 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  669 (788)
                      |++|+|++|+++.+....|.++++|++|||++|.+...+.   ..|.++++|+.|++.+|+|..+...+|..+..|+.||
T Consensus       343 Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~Ld  422 (873)
T KOG4194|consen  343 LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLD  422 (873)
T ss_pred             hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceec
Confidence            8899999999998888889999999999999999876544   4688899999999999999977777999999999999


Q ss_pred             cccCcCcccCCCCccccCCCCcCCcCCCCCCCCCCCCC
Q 003893          670 VAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPI  707 (788)
Q Consensus       670 l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~~  707 (788)
                      |.+|.+.++.|+.|.++ .++.+.+..--++|+|.+.+
T Consensus       423 L~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~W  459 (873)
T KOG4194|consen  423 LGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKW  459 (873)
T ss_pred             CCCCcceeecccccccc-hhhhhhhcccceEEeccHHH
Confidence            99999999999988888 88888888888899998653

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-41  Score=341.66  Aligned_cols=387  Identities=23%  Similarity=0.255  Sum_probs=278.2

Q ss_pred             CCEEEccCCcccCcCccCccCCCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEcc
Q 003893          226 LRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLS  305 (788)
Q Consensus       226 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  305 (788)
                      -+.|++++|.+.......|.++++|+++.+..|.++ .+|..... ..+++.|+|.+|.|.....+.++.++.|+.|||+
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKLDLRHNLISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-ccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence            456778888777777777777888888888888776 67765443 5568888888888877777777778888888888


Q ss_pred             CCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCC
Q 003893          306 NNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGK  385 (788)
Q Consensus       306 ~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  385 (788)
                      .|.|+ ++|...|..-.++++|+|++|+|+......|.++.+|..|.|+.|+++...+..|..+++|+.|++..|.|...
T Consensus       158 rN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  158 RNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             hchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence            88877 77766665556788888888888877777777777888888888888766666777788888888888877644


Q ss_pred             CCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCccccccc
Q 003893          386 IPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNC  465 (788)
Q Consensus       386 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  465 (788)
                      .-..|.++++|+.|.+..|.+.....++|..+.++++|+|+.|++..                        +..+.+.++
T Consensus       237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~------------------------vn~g~lfgL  292 (873)
T KOG4194|consen  237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA------------------------VNEGWLFGL  292 (873)
T ss_pred             hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh------------------------hhccccccc
Confidence            34567777888888888887777777777777788888887777763                        333456666


Q ss_pred             ccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccC
Q 003893          466 LTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNN  545 (788)
Q Consensus       466 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~  545 (788)
                      +.|+.|++|+|.|..+.++..+.+++|++|+|+.|+++...+..|..+..|++|+|++|.+.......|..++       
T Consensus       293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ls-------  365 (873)
T KOG4194|consen  293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLS-------  365 (873)
T ss_pred             chhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhh-------
Confidence            6777777777777666666666667777777777777766666676677777777777776655555555444       


Q ss_pred             CCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccC---cccccccccCCeEeC
Q 003893          546 GSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHI---PPQIGNLTKIQTLNL  622 (788)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L  622 (788)
                                                                    +|++|||++|.+...+   ...|.++++|+.|+|
T Consensus       366 ----------------------------------------------sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l  399 (873)
T KOG4194|consen  366 ----------------------------------------------SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRL  399 (873)
T ss_pred             ----------------------------------------------hhhhhcCcCCeEEEEEecchhhhccchhhhheee
Confidence                                                          6677777777665333   345677888888888


Q ss_pred             CCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCC
Q 003893          623 SHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNP  698 (788)
Q Consensus       623 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np  698 (788)
                      .+|++..+...+|.+++.|++|||.+|.|..+-|.+|..+ .|+.|-+..-.+.|.     +++.++.++-+..++
T Consensus       400 ~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCD-----Cql~Wl~qWl~~~~l  469 (873)
T KOG4194|consen  400 TGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCD-----CQLKWLAQWLYRRKL  469 (873)
T ss_pred             cCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEe-----ccHHHHHHHHHhccc
Confidence            8888887767788888888888888888887778888877 777777766555543     455555554444433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.4e-38  Score=306.60  Aligned_cols=480  Identities=28%  Similarity=0.383  Sum_probs=247.0

Q ss_pred             CCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCCCCCE
Q 003893           47 SIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIED  126 (788)
Q Consensus        47 ~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~  126 (788)
                      -++.|++++|.+....    +.+.++..|.+|++++|++. ..|.+++.+..++.++.+.|.++ .+|. .++.+.+|+.
T Consensus        46 ~l~~lils~N~l~~l~----~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~l~~  118 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVLR----EDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPE-QIGSLISLVK  118 (565)
T ss_pred             chhhhhhccCchhhcc----HhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccH-HHhhhhhhhh
Confidence            3555666666554332    24556666666666666665 44556666666666666666655 5555 5666666666


Q ss_pred             EEcCCCcccCccCccccCCCCCccEEEccCCccchhhhccccCCCCcccccEEEccCCCcCCccCCccccCCCCCcEEEe
Q 003893          127 LILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRL  206 (788)
Q Consensus       127 L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l  206 (788)
                      ++.++|.+..                                                      .+..++.+..++.++.
T Consensus       119 l~~s~n~~~e------------------------------------------------------l~~~i~~~~~l~dl~~  144 (565)
T KOG0472|consen  119 LDCSSNELKE------------------------------------------------------LPDSIGRLLDLEDLDA  144 (565)
T ss_pred             hhccccceee------------------------------------------------------cCchHHHHhhhhhhhc
Confidence            6666655432                                                      1222333334444444


Q ss_pred             cCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCC
Q 003893          207 SHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALD  286 (788)
Q Consensus       207 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~  286 (788)
                      .+|.+. ..|..+ .++.++..+++.+|+++...+.... ++.|+++|...|.+. .+|+.++. +.+|.-|++.+|++.
T Consensus       145 ~~N~i~-slp~~~-~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~-l~~L~~LyL~~Nki~  219 (565)
T KOG0472|consen  145 TNNQIS-SLPEDM-VNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGG-LESLELLYLRRNKIR  219 (565)
T ss_pred             cccccc-cCchHH-HHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcc-hhhhHHHHhhhcccc
Confidence            444442 333332 2444444444444444433332222 444444444444443 44444443 344444444444444


Q ss_pred             CCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccC
Q 003893          287 GSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSL  366 (788)
Q Consensus       287 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  366 (788)
                       ..| .|.++..|++|.++.|+|+ .+|.....+++++..||+..|+++. .|+.+.-+.+|++||+++|.++ ..|..+
T Consensus       220 -~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is-~Lp~sL  294 (565)
T KOG0472|consen  220 -FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDIS-SLPYSL  294 (565)
T ss_pred             -cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCccc-cCCccc
Confidence             233 3444444444444444444 4444444444444444444444442 2233333444444444444444 333344


Q ss_pred             CCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcE----EeccCCc---------CCCC
Q 003893          367 SKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQI----LDISDNN---------ISGS  433 (788)
Q Consensus       367 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~----L~l~~n~---------~~~~  433 (788)
                      +++ .|+.|.+.+|++...-.+.+.. .               ....   ++.|+.    =-++...         ..+.
T Consensus       295 gnl-hL~~L~leGNPlrTiRr~ii~~-g---------------T~~v---LKyLrs~~~~dglS~se~~~e~~~t~~~~~  354 (565)
T KOG0472|consen  295 GNL-HLKFLALEGNPLRTIRREIISK-G---------------TQEV---LKYLRSKIKDDGLSQSEGGTETAMTLPSES  354 (565)
T ss_pred             ccc-eeeehhhcCCchHHHHHHHHcc-c---------------HHHH---HHHHHHhhccCCCCCCcccccccCCCCCCc
Confidence            444 4444444444432110000000 0               0000   011111    0001000         0111


Q ss_pred             CCCCCCCCcccEEEccCcccccccCcccccccc--cccEEeCCCCccCCCCCccccCCcCCcE-EEccCccCcccCcccc
Q 003893          434 LPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCL--TLMILDLSYNHLNGNIPDRVDGLSQLSY-LILAHNNLEGEVPIQL  510 (788)
Q Consensus       434 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~--~L~~L~l~~n~i~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~  510 (788)
                      .+......+.+.|++++-+++ .+|...|....  -....++++|++. .+|..+..+..+.+ +.+++|.+. .+|..+
T Consensus       355 ~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l  431 (565)
T KOG0472|consen  355 FPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLEL  431 (565)
T ss_pred             ccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHH
Confidence            122222344555555555554 44544444332  2567778888776 56666666555544 344444444 667777


Q ss_pred             cCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCcc
Q 003893          511 CRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVP  590 (788)
Q Consensus       511 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  590 (788)
                      +.+++|..|++++|.+... |..+..+.                                                    
T Consensus       432 ~~l~kLt~L~L~NN~Ln~L-P~e~~~lv----------------------------------------------------  458 (565)
T KOG0472|consen  432 SQLQKLTFLDLSNNLLNDL-PEEMGSLV----------------------------------------------------  458 (565)
T ss_pred             Hhhhcceeeecccchhhhc-chhhhhhh----------------------------------------------------
Confidence            7778888888877776533 32222222                                                    


Q ss_pred             CCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEec
Q 003893          591 SLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSV  670 (788)
Q Consensus       591 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l  670 (788)
                       .|+.||++.|++. .+|+.+..+..++.+-.++|++....|+.+.++.+|.+|||.+|.+. .+|..++++.+|+.|++
T Consensus       459 -~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL  535 (565)
T KOG0472|consen  459 -RLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLEL  535 (565)
T ss_pred             -hhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEe
Confidence             4777777777776 67777777777777777777777777777777778888888888777 56777777788888888


Q ss_pred             ccCcCc
Q 003893          671 AYNNLS  676 (788)
Q Consensus       671 ~~N~l~  676 (788)
                      ++|++.
T Consensus       536 ~gNpfr  541 (565)
T KOG0472|consen  536 DGNPFR  541 (565)
T ss_pred             cCCccC
Confidence            888777

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.1e-38  Score=307.20  Aligned_cols=428  Identities=26%  Similarity=0.355  Sum_probs=299.7

Q ss_pred             CCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCcCEEEccCCcCcccCChhhhh
Q 003893          191 FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGD  270 (788)
Q Consensus       191 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  270 (788)
                      +|..+....++.+++.++|.+. +++..+ +.+..+..++..+|++... +..+..+.++..+++.+|+++ ..|+...+
T Consensus       106 lp~~i~s~~~l~~l~~s~n~~~-el~~~i-~~~~~l~dl~~~~N~i~sl-p~~~~~~~~l~~l~~~~n~l~-~l~~~~i~  181 (565)
T KOG0472|consen  106 LPEQIGSLISLVKLDCSSNELK-ELPDSI-GRLLDLEDLDATNNQISSL-PEDMVNLSKLSKLDLEGNKLK-ALPENHIA  181 (565)
T ss_pred             ccHHHhhhhhhhhhhcccccee-ecCchH-HHHhhhhhhhccccccccC-chHHHHHHHHHHhhccccchh-hCCHHHHH
Confidence            3444555666777777777774 445543 5677777777777777654 445566777778888888887 56666655


Q ss_pred             cCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCc
Q 003893          271 ILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIW  350 (788)
Q Consensus       271 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~  350 (788)
                       ++.|++||.-.|-++ .+|+.++.+.+|..|++.+|++. .+|+  |.+|..|++++++.|.|.........+++++..
T Consensus       182 -m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~v  256 (565)
T KOG0472|consen  182 -MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLV  256 (565)
T ss_pred             -HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhccccccee
Confidence             677888888777776 56777888888888888888887 7773  345777888888888877665555567788888


Q ss_pred             eeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccC---CcEEeccC
Q 003893          351 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRI---LQILDISD  427 (788)
Q Consensus       351 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~---L~~L~l~~  427 (788)
                      ||+.+|++. ..|+.+.-+.+|++||+++|.++ ..|..++++ .|+.|.+.+|.+.. +-..+-+.+.   |++|.=  
T Consensus       257 LDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs--  330 (565)
T KOG0472|consen  257 LDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRS--  330 (565)
T ss_pred             eeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHH--
Confidence            888888887 66777777788888888888887 566677777 77777777777663 2333322222   232221  


Q ss_pred             CcCCCCCCCCCCCCcccEEEccCcccccccCcc---cccccccccEEeCCCCccCCCCCccccCC--cCCcEEEccCccC
Q 003893          428 NNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEG---TFFNCLTLMILDLSYNHLNGNIPDRVDGL--SQLSYLILAHNNL  502 (788)
Q Consensus       428 n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~~~~~L~~L~l~~n~i~~~~~~~~~~l--~~L~~L~L~~n~l  502 (788)
                       .+....+....-..         .-....+..   ......+.+.|++++-+++....+.|..-  .-....+++.|++
T Consensus       331 -~~~~dglS~se~~~---------e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL  400 (565)
T KOG0472|consen  331 -KIKDDGLSQSEGGT---------ETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQL  400 (565)
T ss_pred             -hhccCCCCCCcccc---------cccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchH
Confidence             11111110000000         000011111   22334567888999888884433344322  2267889999998


Q ss_pred             cccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCce
Q 003893          503 EGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSIT  582 (788)
Q Consensus       503 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~  582 (788)
                      . ++|..+..+..+++.-+..|+..+.+|..++.++                                            
T Consensus       401 ~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~--------------------------------------------  435 (565)
T KOG0472|consen  401 C-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQ--------------------------------------------  435 (565)
T ss_pred             h-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhh--------------------------------------------
Confidence            7 6777777666655443334444445665555444                                            


Q ss_pred             ecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcC
Q 003893          583 YTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVEL  662 (788)
Q Consensus       583 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l  662 (788)
                               .|..|+|++|-+- .+|..++.+..|+.||+|+|++. ..|.....+..++.+-.++|++....|+.+..+
T Consensus       436 ---------kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm  504 (565)
T KOG0472|consen  436 ---------KLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNM  504 (565)
T ss_pred             ---------cceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhh
Confidence                     7899999999887 77888999999999999999999 788888888889999999999998888889999


Q ss_pred             CCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCC
Q 003893          663 NTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFL  700 (788)
Q Consensus       663 ~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~  700 (788)
                      .+|..||+.+|.+.. +|..++.+++++.+.+.||||.
T Consensus       505 ~nL~tLDL~nNdlq~-IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  505 RNLTTLDLQNNDLQQ-IPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhcceeccCCCchhh-CChhhccccceeEEEecCCccC
Confidence            999999999999995 5555799999999999999997

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=6.9e-35  Score=309.79  Aligned_cols=404  Identities=24%  Similarity=0.314  Sum_probs=241.9

Q ss_pred             CccCCCCCCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCccccCCC
Q 003893           67 QGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNH  146 (788)
Q Consensus        67 ~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l  146 (788)
                      .-+-.-..++.|+++.|-+....-+.+.+..+|+.||+++|++. ..|. .+..+.+|+.|+++.|.+. ..+ ....++
T Consensus        15 ~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~-~it~l~~L~~ln~s~n~i~-~vp-~s~~~~   90 (1081)
T KOG0618|consen   15 EQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPI-QITLLSHLRQLNLSRNYIR-SVP-SSCSNM   90 (1081)
T ss_pred             hhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCc-hhhhHHHHhhcccchhhHh-hCc-hhhhhh
Confidence            33433344667777777655433344455556777777777765 4555 6666777777777777665 233 345566


Q ss_pred             CCccEEEccCCccchhhhccccCCCCcccccEEEccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhcCCCC
Q 003893          147 SRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKL  226 (788)
Q Consensus       147 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L  226 (788)
                      .+|+++.+.+|.+.                             ..|..+..+++|+.|+++.|.+ +..|..+ ..+..+
T Consensus        91 ~~l~~lnL~~n~l~-----------------------------~lP~~~~~lknl~~LdlS~N~f-~~~Pl~i-~~lt~~  139 (1081)
T KOG0618|consen   91 RNLQYLNLKNNRLQ-----------------------------SLPASISELKNLQYLDLSFNHF-GPIPLVI-EVLTAE  139 (1081)
T ss_pred             hcchhheeccchhh-----------------------------cCchhHHhhhcccccccchhcc-CCCchhH-HhhhHH
Confidence            67777776666532                             2456666777777777777776 3555543 466667


Q ss_pred             CEEEccCCcccCcCccCccCCCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccC
Q 003893          227 RQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSN  306 (788)
Q Consensus       227 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  306 (788)
                      ..+..++|.....    ++.. .++.+++..|.+.+.++.++.. +..  .|+|.+|.+.   -..+..+++|+.+....
T Consensus       140 ~~~~~s~N~~~~~----lg~~-~ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~r  208 (1081)
T KOG0618|consen  140 EELAASNNEKIQR----LGQT-SIKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME---VLDLSNLANLEVLHCER  208 (1081)
T ss_pred             HHHhhhcchhhhh----hccc-cchhhhhhhhhcccchhcchhh-hhe--eeecccchhh---hhhhhhccchhhhhhhh
Confidence            7777777622111    1111 1667777777777666666543 223  5888888776   12356778888888888


Q ss_pred             CcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCC
Q 003893          307 NQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKI  386 (788)
Q Consensus       307 n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  386 (788)
                      |++. .+..    .-++|+.|+.+.|.++.....  .-..+|++++++.|++. .+|.++..+.+|+.++..+|.+. ..
T Consensus       209 n~ls-~l~~----~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~l  279 (1081)
T KOG0618|consen  209 NQLS-ELEI----SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-AL  279 (1081)
T ss_pred             cccc-eEEe----cCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hh
Confidence            8776 4332    246788888888887733322  23467888888888887 55677788888888888888875 56


Q ss_pred             CccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCC--CCcccEEEccCcccccccCcccccc
Q 003893          387 PRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYD--FVCIEQVHLSKNMLHGQLKEGTFFN  464 (788)
Q Consensus       387 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~  464 (788)
                      |..+...++|+.|.+..|.+. -+|....+.+.|++||+..|.+....+..+.  ...+..++.+.|.+. ..|...=..
T Consensus       280 p~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~  357 (1081)
T KOG0618|consen  280 PLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENN  357 (1081)
T ss_pred             HHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchh
Confidence            666667777888888777776 4455566677788888887777533332222  112344444444432 122111222


Q ss_pred             cccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCC
Q 003893          465 CLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH  527 (788)
Q Consensus       465 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  527 (788)
                      .+.|+.|.+.+|.+++..-..+.+++.|+.|+|++|++.......+.++..|++|++|+|+++
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~  420 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT  420 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh
Confidence            334555555555555444444455555555555555555333344455555555555555554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=2.3e-33  Score=298.27  Aligned_cols=454  Identities=27%  Similarity=0.300  Sum_probs=258.4

Q ss_pred             eecCCCCCCCCCCccEEEcCCcccccCccchhHhhhcCCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCC
Q 003893            8 GVLSGQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRG   87 (788)
Q Consensus         8 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~   87 (788)
                      ..+|...+..-. +..|++..  +.+...-.+.+.. ..+|++||+++|.+... |   ..+..+.+|+.|+++.|.+. 
T Consensus        11 ~~ip~~i~~~~~-~~~ln~~~--N~~l~~pl~~~~~-~v~L~~l~lsnn~~~~f-p---~~it~l~~L~~ln~s~n~i~-   81 (1081)
T KOG0618|consen   11 ELIPEQILNNEA-LQILNLRR--NSLLSRPLEFVEK-RVKLKSLDLSNNQISSF-P---IQITLLSHLRQLNLSRNYIR-   81 (1081)
T ss_pred             cccchhhccHHH-HHhhhccc--cccccCchHHhhh-eeeeEEeeccccccccC-C---chhhhHHHHhhcccchhhHh-
Confidence            344533333333 66777776  3321111233333 44588888888776432 2   56777888888888888776 


Q ss_pred             CccHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCccccCCCCCccEEEccCCccchhhhccc
Q 003893           88 SLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESH  167 (788)
Q Consensus        88 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  167 (788)
                      ..|...+++.+|++|+|.+|.+. ..|. .+..+.+|++|+++.|++. .+| ..+..+..+..+..++|.....     
T Consensus        82 ~vp~s~~~~~~l~~lnL~~n~l~-~lP~-~~~~lknl~~LdlS~N~f~-~~P-l~i~~lt~~~~~~~s~N~~~~~-----  152 (1081)
T KOG0618|consen   82 SVPSSCSNMRNLQYLNLKNNRLQ-SLPA-SISELKNLQYLDLSFNHFG-PIP-LVIEVLTAEEELAASNNEKIQR-----  152 (1081)
T ss_pred             hCchhhhhhhcchhheeccchhh-cCch-hHHhhhcccccccchhccC-CCc-hhHHhhhHHHHHhhhcchhhhh-----
Confidence            55677778888888888888765 6676 7788888888888888775 344 2456666777777776621111     


Q ss_pred             cCCCCcccccEEEccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccCC
Q 003893          168 SLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSH  247 (788)
Q Consensus       168 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  247 (788)
                         .+...++.+++ ..+...+.++..+..+..  .+++.+|.+. ...   +.++++|+.+....|.+.....    .-
T Consensus       153 ---lg~~~ik~~~l-~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~~----~g  218 (1081)
T KOG0618|consen  153 ---LGQTSIKKLDL-RLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELEI----SG  218 (1081)
T ss_pred             ---hccccchhhhh-hhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccceEEe----cC
Confidence               11112333333 333334444444443333  4666666553 111   2455666666665555443221    23


Q ss_pred             CCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEE
Q 003893          248 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSL  327 (788)
Q Consensus       248 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L  327 (788)
                      ++++.|+.++|.++...+..   ...+|+++++++|+++ .+|+++..+.+|+.++..+|.++ .+|..++. ..+|+.|
T Consensus       219 ~~l~~L~a~~n~l~~~~~~p---~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~-~~~L~~l  292 (1081)
T KOG0618|consen  219 PSLTALYADHNPLTTLDVHP---VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISR-ITSLVSL  292 (1081)
T ss_pred             cchheeeeccCcceeecccc---ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhh-hhhHHHH
Confidence            45566666666554211111   1235666666666665 34466666666666666666665 55555553 4556666


Q ss_pred             EccccccCccccccccCCCccCceeccCccCcccCCcc-CCCCCC-CcEEEcccCcCCCCCCccccCCCCccEEEccCCe
Q 003893          328 ALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQS-LSKCSS-LQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNH  405 (788)
Q Consensus       328 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  405 (788)
                      .+..|.+..+ +....+...|++|++..|.+. ..|+. +..... |..|+.+.|++.......=...+.|+.|++.+|.
T Consensus       293 ~~~~nel~yi-p~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~  370 (1081)
T KOG0618|consen  293 SAAYNELEYI-PPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH  370 (1081)
T ss_pred             HhhhhhhhhC-CCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc
Confidence            6666655532 223334555666666666555 23322 222221 4444445554442211111123445555555555


Q ss_pred             eccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCcc
Q 003893          406 IEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDR  485 (788)
Q Consensus       406 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~  485 (788)
                      ++...-..+.+.++|+.|+|++|++.                        .+|...+.++..|++|++|+|+++ .+|..
T Consensus       371 Ltd~c~p~l~~~~hLKVLhLsyNrL~------------------------~fpas~~~kle~LeeL~LSGNkL~-~Lp~t  425 (1081)
T KOG0618|consen  371 LTDSCFPVLVNFKHLKVLHLSYNRLN------------------------SFPASKLRKLEELEELNLSGNKLT-TLPDT  425 (1081)
T ss_pred             ccccchhhhccccceeeeeecccccc------------------------cCCHHHHhchHHhHHHhcccchhh-hhhHH
Confidence            55544445555555555555555543                        566667777888888888888887 56677


Q ss_pred             ccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCc
Q 003893          486 VDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHG  528 (788)
Q Consensus       486 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  528 (788)
                      +..++.|++|...+|++. ..| .+..++.|+.+|++.|.++.
T Consensus       426 va~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  426 VANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             HHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence            778888888888888877 455 67778888888888887763

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=3.6e-32  Score=275.97  Aligned_cols=364  Identities=27%  Similarity=0.347  Sum_probs=209.9

Q ss_pred             EEeeCCcCC-CCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCc
Q 003893          278 FNISMNALD-GSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGN  356 (788)
Q Consensus       278 L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n  356 (788)
                      .|+++|.++ +..|.....+++++.|.|.+.++. .+|+.+. .+.+|++|.+++|++.. ....+..+|.|+.+.+..|
T Consensus        12 vDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~-~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R~N   88 (1255)
T KOG0444|consen   12 VDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELS-RLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVIVRDN   88 (1255)
T ss_pred             ccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHH-HHhhhhhhhhhhhhhHh-hhhhhccchhhHHHhhhcc
Confidence            334444433 233444444444444444444444 4444443 24444444444444432 1233344455555555554


Q ss_pred             cCcc-cCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCC
Q 003893          357 HFVG-EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLP  435 (788)
Q Consensus       357 ~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  435 (788)
                      ++.. -+|..+..+..|..||+++|++. ..|..+...+++-.|++++|+|..+....|.+++.|-.||+|+|++...+|
T Consensus        89 ~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPP  167 (1255)
T KOG0444|consen   89 NLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPP  167 (1255)
T ss_pred             ccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCH
Confidence            4432 23444445555555555555554 444455555555555555555554433444555555555555555554444


Q ss_pred             CCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccC-CCCCccccCCcCCcEEEccCccCcccCcccccCCC
Q 003893          436 SCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN-GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLN  514 (788)
Q Consensus       436 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  514 (788)
                      ....+..|++|.+++|.+.- ..-..+..+++|++|.+++.+-+ .-+|..+.++.+|+.++++.|.+. ..|+.+..++
T Consensus       168 Q~RRL~~LqtL~Ls~NPL~h-fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~  245 (1255)
T KOG0444|consen  168 QIRRLSMLQTLKLSNNPLNH-FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLR  245 (1255)
T ss_pred             HHHHHhhhhhhhcCCChhhH-HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhh
Confidence            44445555555555555431 11113444556677777766543 236667777777777777777776 6777777777


Q ss_pred             CCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCc
Q 003893          515 QLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS  594 (788)
Q Consensus       515 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~  594 (788)
                      +|+.|+||+|+|+......                                                      ....+|+
T Consensus       246 ~LrrLNLS~N~iteL~~~~------------------------------------------------------~~W~~lE  271 (1255)
T KOG0444|consen  246 NLRRLNLSGNKITELNMTE------------------------------------------------------GEWENLE  271 (1255)
T ss_pred             hhheeccCcCceeeeeccH------------------------------------------------------HHHhhhh
Confidence            7777777777776332100                                                      0011567


Q ss_pred             eEECCCCcccccCcccccccccCCeEeCCCCCCC-CCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccC
Q 003893          595 GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLA-GPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYN  673 (788)
Q Consensus       595 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N  673 (788)
                      +|++|.|+++ ..|+++..++.|+.|.+.+|+++ .-+|++++.+..|+.+..++|.+. ..|+.+..+..|+.|.|+.|
T Consensus       272 tLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~N  349 (1255)
T KOG0444|consen  272 TLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHN  349 (1255)
T ss_pred             hhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccc
Confidence            7777777777 66777777777777777777775 246777777777777777777776 66777777777777777777


Q ss_pred             cCcccCCCCccccCCCCcCCcCCCCCCCCCC
Q 003893          674 NLSGKIPERAAQFATFNESSYEGNPFLCGPP  704 (788)
Q Consensus       674 ~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~  704 (788)
                      .+. ..|+.+.-++.+..+++..||-+--|+
T Consensus       350 rLi-TLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  350 RLI-TLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             cee-echhhhhhcCCcceeeccCCcCccCCC
Confidence            776 356666777777777777777665443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=2.1e-32  Score=277.61  Aligned_cols=79  Identities=27%  Similarity=0.439  Sum_probs=37.2

Q ss_pred             CceEECCCCccc-ccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecc
Q 003893          593 LSGLDLSCNRLI-GHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  671 (788)
Q Consensus       593 L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  671 (788)
                      |+.|++.+|+++ .-+|..++.+.+|+.+..++|++. ..|+++..+..|+.|.|+.|++. ..|+++.-++.|+.||++
T Consensus       293 L~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlr  370 (1255)
T KOG0444|consen  293 LTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLR  370 (1255)
T ss_pred             HHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeecc
Confidence            344444444443 233444444445555544444444 44444444455555555555444 344444444445555554


Q ss_pred             cC
Q 003893          672 YN  673 (788)
Q Consensus       672 ~N  673 (788)
                      .|
T Consensus       371 eN  372 (1255)
T KOG0444|consen  371 EN  372 (1255)
T ss_pred             CC
Confidence            44

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.93  E-value=1.4e-28  Score=237.51  Aligned_cols=397  Identities=21%  Similarity=0.250  Sum_probs=235.4

Q ss_pred             CCCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccC-CcCCCccchHHhhCCCCC
Q 003893          246 SHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSN-NQLTGEIPEHLAMGCVSL  324 (788)
Q Consensus       246 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~~l~~L  324 (788)
                      -.+...+++|..|.|+ .+|+..|..+++|+.|||++|.|+.+.|++|.++++|..|.+.+ |+|+ .+|...|.++.++
T Consensus        65 LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~sl  142 (498)
T KOG4237|consen   65 LPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSL  142 (498)
T ss_pred             CCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHH
Confidence            3456778999999998 89999988899999999999999999999999999988877666 8898 9999999999999


Q ss_pred             cEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCC------------CCCCccccC
Q 003893          325 RSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS------------GKIPRWLGN  392 (788)
Q Consensus       325 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~------------~~~~~~l~~  392 (788)
                      +.|.+.-|++.......|..+++|..|.+.+|.+..+-...|..+..++.+.+..|.+.            ...|..++.
T Consensus       143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg  222 (498)
T KOG4237|consen  143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG  222 (498)
T ss_pred             HHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence            99999999999888889999999999999999998666668999999999998888732            112222222


Q ss_pred             CCCccEEEccCCeeccCchhhhhcc-cCCcEEeccCCcCCCCCC-CCC-CCCcccEEEccCcccccccCccccccccccc
Q 003893          393 LTVLRHIIMPKNHIEGPIPLEFCQL-RILQILDISDNNISGSLP-SCY-DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLM  469 (788)
Q Consensus       393 l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~-~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  469 (788)
                      ........+.+.++..+.+..|... .++..=-.+.+......| ..| .+++|+.|++++|.++ .+.+++|.+...++
T Consensus       223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~  301 (498)
T KOG4237|consen  223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQ  301 (498)
T ss_pred             ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhh
Confidence            2222222222222222222221110 001000001111111111 111 1444444444444443 23334666666666


Q ss_pred             EEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCc-----------------cCcc
Q 003893          470 ILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHG-----------------HIPS  532 (788)
Q Consensus       470 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~~  532 (788)
                      +|.|..|++.......|.++..|+.|+|.+|+|+...|.+|..+.+|.+|++-.|++.-                 ..|.
T Consensus       302 eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~  381 (498)
T KOG4237|consen  302 ELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPR  381 (498)
T ss_pred             hhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCC
Confidence            66666666654444555666666666666666665556666666666666666555430                 0111


Q ss_pred             cccccchhhhccCCCCCCCc----ccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCc
Q 003893          533 CFDNTTLHERYNNGSSLQPF----ETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIP  608 (788)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  608 (788)
                      +-..-.+...-........+    +............+.+..++.+--.++.........+|....+|++.+|.++ .+|
T Consensus       382 Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~-~vp  460 (498)
T KOG4237|consen  382 CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAIT-SVP  460 (498)
T ss_pred             CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchhc-ccC
Confidence            11110000000000000000    0011111112233334455555444555555555667777777777777777 444


Q ss_pred             ccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCc
Q 003893          609 PQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYN  649 (788)
Q Consensus       609 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  649 (788)
                      ..  .+.+| .+|+++|++.......|.++++|.+|-|++|
T Consensus       461 ~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  461 DE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             HH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            44  45666 7777777777666667777777777777765

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=9e-27  Score=225.15  Aligned_cols=281  Identities=21%  Similarity=0.215  Sum_probs=222.1

Q ss_pred             EEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccc-
Q 003893          253 LDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN-  331 (788)
Q Consensus       253 L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~-  331 (788)
                      .+-++-+++ .+|..+.   +.-+.++|..|.|+.+.+.+|+.+++|+.|||++|.|+ .|....|.++++|.+|-+.+ 
T Consensus        51 VdCr~~GL~-eVP~~LP---~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~  125 (498)
T KOG4237|consen   51 VDCRGKGLT-EVPANLP---PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGN  125 (498)
T ss_pred             EEccCCCcc-cCcccCC---CcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcC
Confidence            455555666 7777653   47889999999999888899999999999999999999 88888888999988877766 


Q ss_pred             cccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeecc---
Q 003893          332 NNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEG---  408 (788)
Q Consensus       332 n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~---  408 (788)
                      |+|+......|.++..|+.|.+.-|++..+..+.|..++++..|.+..|.+....-..|..+.+++.+.+..|.+..   
T Consensus       126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn  205 (498)
T KOG4237|consen  126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN  205 (498)
T ss_pred             CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence            99999999999999999999999999998888999999999999999999885555588999999999998887321   


Q ss_pred             ---------CchhhhhcccCCcEEeccCCcCCCCCCCCCCCC--cccEEEccCcccccccCcccccccccccEEeCCCCc
Q 003893          409 ---------PIPLEFCQLRILQILDISDNNISGSLPSCYDFV--CIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNH  477 (788)
Q Consensus       409 ---------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~  477 (788)
                               ..+..+++..-..-..+.+.++...-+.-+...  .+..-..+.+...+..|...|..+++|+.|++++|+
T Consensus       206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~  285 (498)
T KOG4237|consen  206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK  285 (498)
T ss_pred             cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence                     122222333323333333333332222222211  222222334445566777789999999999999999


Q ss_pred             cCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccc
Q 003893          478 LNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTT  538 (788)
Q Consensus       478 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  538 (788)
                      ++.+-+.+|++...+++|.|..|++.......|.++..|+.|+|.+|+|+...|..|....
T Consensus       286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~  346 (498)
T KOG4237|consen  286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF  346 (498)
T ss_pred             cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence            9999999999999999999999999877778899999999999999999999998887765

>PLN03210 Resistant to P

Probab=99.90  E-value=3.2e-22  Score=240.10  Aligned_cols=341  Identities=20%  Similarity=0.228  Sum_probs=222.5

Q ss_pred             cCccCCCCcCEEEccCCc------CcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccch
Q 003893          242 LPIHSHKQLRLLDVSKNN------FQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPE  315 (788)
Q Consensus       242 ~~~~~~~~L~~L~l~~n~------l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~  315 (788)
                      ..|..+++|+.|.+..+.      +...+|..+....++|+.|.+.++.+. .+|..| ...+|+.|++.++.+. .++.
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~  628 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD  628 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence            345566777777765442      222345555443456777777777766 455555 3567777777777776 6665


Q ss_pred             HHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCC
Q 003893          316 HLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTV  395 (788)
Q Consensus       316 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  395 (788)
                      .+. .+++|+.|+++++......+ .+..+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+ ++++
T Consensus       629 ~~~-~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s  705 (1153)
T PLN03210        629 GVH-SLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS  705 (1153)
T ss_pred             ccc-cCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence            543 47777777777665333333 35567777777777776655677777777777788777765444555544 5777


Q ss_pred             ccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCccccc------ccCccccccccccc
Q 003893          396 LRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHG------QLKEGTFFNCLTLM  469 (788)
Q Consensus       396 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~------~~~~~~~~~~~~L~  469 (788)
                      |+.|++++|......|..   .++|+.|++++|.+. .+|....+++|+.|.+.++....      .++...+..+++|+
T Consensus       706 L~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~  781 (1153)
T PLN03210        706 LYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT  781 (1153)
T ss_pred             CCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccch
Confidence            777777777654444432   356777777777765 34444456677777665533210      11111233356788


Q ss_pred             EEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCC
Q 003893          470 ILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSL  549 (788)
Q Consensus       470 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~  549 (788)
                      .|++++|.....+|..++++++|+.|++++|...+.+|... .+++|+.|++++|......|.                 
T Consensus       782 ~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~-----------------  843 (1153)
T PLN03210        782 RLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD-----------------  843 (1153)
T ss_pred             heeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc-----------------
Confidence            88888887666777778888888888888876444556554 677888888887754322221                 


Q ss_pred             CCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCC
Q 003893          550 QPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAG  629 (788)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  629 (788)
                                                             .+.+|+.|+|++|.++ .+|..+..+++|+.|+|++|+-..
T Consensus       844 ---------------------------------------~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~  883 (1153)
T PLN03210        844 ---------------------------------------ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ  883 (1153)
T ss_pred             ---------------------------------------cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC
Confidence                                                   2237888888888887 567788888889999988844333


Q ss_pred             CCCcccCCCCCCCeeeCCCcc
Q 003893          630 PIPSTFSNLRNIESLDLSYNK  650 (788)
Q Consensus       630 ~~~~~~~~l~~L~~L~Ls~N~  650 (788)
                      .+|..+..+++|+.+++++|.
T Consensus       884 ~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        884 RVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ccCcccccccCCCeeecCCCc
Confidence            566677788888888888885

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.89  E-value=1.2e-21  Score=235.17  Aligned_cols=340  Identities=21%  Similarity=0.231  Sum_probs=215.7

Q ss_pred             hhhhhcCCCCcEEEeeCCcC------CCCCCccccCCC-CCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccc
Q 003893          266 LEIGDILSRLTVFNISMNAL------DGSIPSSFGNMN-FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHM  338 (788)
Q Consensus       266 ~~~~~~~~~L~~L~L~~n~l------~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~  338 (788)
                      ...+..+++|+.|.+..+..      ...+|..+..++ +|+.|.+.++.+. .+|..+  ...+|++|++++|.+... 
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~L-  626 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEKL-  626 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccccc-
Confidence            33444566777777755432      123445555543 4777777777766 666655  256777777777776543 


Q ss_pred             cccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhccc
Q 003893          339 FSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLR  418 (788)
Q Consensus       339 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~  418 (788)
                      +..+..+++|+.|+++++.....+|. +..+++|++|++++|.....+|..+..+++|+.|++++|...+.+|..+ +++
T Consensus       627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~  704 (1153)
T PLN03210        627 WDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK  704 (1153)
T ss_pred             ccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence            34455677777777776654434443 5667777777777766555666667777777777777765444555443 567


Q ss_pred             CCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCC-------CCCccccCCcC
Q 003893          419 ILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG-------NIPDRVDGLSQ  491 (788)
Q Consensus       419 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~-------~~~~~~~~l~~  491 (788)
                      +|+.|++++|.....+|..  ..+|+.|++++|.+. .+|. . ..+++|++|++.++....       ..+..+...++
T Consensus       705 sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~-~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s  779 (1153)
T PLN03210        705 SLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPS-N-LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS  779 (1153)
T ss_pred             CCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-cccc-c-ccccccccccccccchhhccccccccchhhhhcccc
Confidence            7777777777554444432  346677777777654 3443 1 245666666666543211       11112223467


Q ss_pred             CcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccc
Q 003893          492 LSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQIL  571 (788)
Q Consensus       492 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  571 (788)
                      |+.|++++|.....+|..+.++++|+.|++++|...+.+|...                                     
T Consensus       780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-------------------------------------  822 (1153)
T PLN03210        780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-------------------------------------  822 (1153)
T ss_pred             chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-------------------------------------
Confidence            7777777777666677777777778888777765433333221                                     


Q ss_pred             cceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCccc
Q 003893          572 ESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL  651 (788)
Q Consensus       572 ~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  651 (788)
                                       .+++|+.|++++|......|..   .++|+.|+|++|.++ .+|..+..+++|+.|++++|+-
T Consensus       823 -----------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~  881 (1153)
T PLN03210        823 -----------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNN  881 (1153)
T ss_pred             -----------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCC
Confidence                             1237888999888655444442   367889999999988 5677888899999999988544


Q ss_pred             CccCchhhhcCCCCcEEecccCc
Q 003893          652 SWKIPYQLVELNTLAVFSVAYNN  674 (788)
Q Consensus       652 ~~~~~~~l~~l~~L~~L~l~~N~  674 (788)
                      ...+|..+..+++|+.+++++|.
T Consensus       882 L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        882 LQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cCccCcccccccCCCeeecCCCc
Confidence            34577777888889999998884

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=4.4e-20  Score=204.69  Aligned_cols=63  Identities=27%  Similarity=0.344  Sum_probs=36.1

Q ss_pred             CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhh
Q 003893          592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQL  659 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  659 (788)
                      .|+.|++++|.+++ +|..   ..+|+.|++++|+|+ .+|..+.++++|+.|+|++|++++..+..+
T Consensus       403 ~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        403 ELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            45566666666653 3432   234556666666666 345556666666666666666665555544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.83  E-value=4e-20  Score=205.03  Aligned_cols=145  Identities=28%  Similarity=0.350  Sum_probs=103.5

Q ss_pred             cccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCC
Q 003893          467 TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNG  546 (788)
Q Consensus       467 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~  546 (788)
                      +|+.|++++|.+++ +|..   ..+|+.|++++|+++. +|..   .++|+.|++++|.+..+ |.              
T Consensus       323 ~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~L-P~--------------  379 (788)
T PRK15387        323 ELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSL-PA--------------  379 (788)
T ss_pred             cccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---CcccceehhhccccccC-cc--------------
Confidence            35566666666653 3321   2467777777777763 3332   24667777777777632 21              


Q ss_pred             CCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCC
Q 003893          547 SSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNN  626 (788)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  626 (788)
                                                                .|.+|+.|++++|.+++ +|..   .++|+.|++++|+
T Consensus       380 ------------------------------------------l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~  413 (788)
T PRK15387        380 ------------------------------------------LPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNR  413 (788)
T ss_pred             ------------------------------------------cccccceEEecCCcccC-CCCc---ccCCCEEEccCCc
Confidence                                                      12368889999999884 4433   3689999999999


Q ss_pred             CCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccc
Q 003893          627 LAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQ  685 (788)
Q Consensus       627 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~  685 (788)
                      +++ +|..   ..+|+.|++++|+|+ .+|..+..+++|+.|++++|++++.++..+..
T Consensus       414 Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        414 LTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             CCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence            995 5653   357889999999998 68999999999999999999999887775533

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.72  E-value=1e-17  Score=187.59  Aligned_cols=97  Identities=28%  Similarity=0.383  Sum_probs=53.7

Q ss_pred             CCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceec
Q 003893          274 RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQL  353 (788)
Q Consensus       274 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l  353 (788)
                      +.+.|+++++.++ .+|..+.  +.|+.|++++|.++ .+|..++   ++|++|++++|.++.+ +..+  .++|+.|++
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsL-P~~l--~~~L~~L~L  248 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSI-PATL--PDTIQEMEL  248 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccC-Chhh--hccccEEEC
Confidence            4566777777666 3444332  45777777777776 6666543   4667777776666543 2222  234556666


Q ss_pred             cCccCcccCCccCCCCCCCcEEEcccCcCC
Q 003893          354 EGNHFVGEIPQSLSKCSSLQGLFLSNNSLS  383 (788)
Q Consensus       354 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  383 (788)
                      ++|.+. .+|..+.  ++|+.|++++|++.
T Consensus       249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~  275 (754)
T PRK15370        249 SINRIT-ELPERLP--SALQSLDLFHNKIS  275 (754)
T ss_pred             cCCccC-cCChhHh--CCCCEEECcCCccC
Confidence            666555 3333332  24555555555544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.72  E-value=2.3e-17  Score=184.70  Aligned_cols=159  Identities=25%  Similarity=0.341  Sum_probs=74.0

Q ss_pred             cCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEc
Q 003893          250 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLAL  329 (788)
Q Consensus       250 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l  329 (788)
                      ...|++++++++ .+|..+.   ++++.|++++|.++ .+|..+.  ++|+.|++++|.++ .+|..+.   ++|+.|++
T Consensus       180 ~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~L  248 (754)
T PRK15370        180 KTELRLKILGLT-TIPACIP---EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMEL  248 (754)
T ss_pred             ceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEEC
Confidence            344555555554 4444332   24555555555555 2333222  35555555555555 4554432   24555555


Q ss_pred             cccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccC
Q 003893          330 SNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGP  409 (788)
Q Consensus       330 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  409 (788)
                      ++|.+..+ +..+  ..+|+.|++++|++. .+|..+.  ++|+.|++++|+++. +|..+.  ++|+.|++++|.+.. 
T Consensus       249 s~N~L~~L-P~~l--~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-  318 (754)
T PRK15370        249 SINRITEL-PERL--PSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-  318 (754)
T ss_pred             cCCccCcC-ChhH--hCCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-
Confidence            55555532 2222  134566666666555 3343332  356666666665552 232221  245555555555542 


Q ss_pred             chhhhhcccCCcEEeccCCcCC
Q 003893          410 IPLEFCQLRILQILDISDNNIS  431 (788)
Q Consensus       410 ~~~~~~~l~~L~~L~l~~n~~~  431 (788)
                      +|..+  .++|+.|++++|.++
T Consensus       319 LP~~l--~~sL~~L~Ls~N~Lt  338 (754)
T PRK15370        319 LPETL--PPGLKTLEAGENALT  338 (754)
T ss_pred             CCccc--cccceeccccCCccc
Confidence            22211  134555555555443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.69  E-value=2.3e-18  Score=180.28  Aligned_cols=108  Identities=21%  Similarity=0.285  Sum_probs=56.4

Q ss_pred             CCceEECCCCccccc----CcccccccccCCeEeCCCCCCCCCCCcccC-----CCCCCCeeeCCCcccCc----cCchh
Q 003893          592 LLSGLDLSCNRLIGH----IPPQIGNLTKIQTLNLSHNNLAGPIPSTFS-----NLRNIESLDLSYNKLSW----KIPYQ  658 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~----~~~~~  658 (788)
                      +|+.|++++|.+++.    .+..+..+++|++|++++|.+++.....+.     ..+.|++|++++|.++.    .+...
T Consensus       194 ~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~  273 (319)
T cd00116         194 NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEV  273 (319)
T ss_pred             CCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHH
Confidence            455566665555422    223344556666666666666542111111     23567777777776651    22334


Q ss_pred             hhcCCCCcEEecccCcCccc----CCCCcccc-CCCCcCCcCCCCC
Q 003893          659 LVELNTLAVFSVAYNNLSGK----IPERAAQF-ATFNESSYEGNPF  699 (788)
Q Consensus       659 l~~l~~L~~L~l~~N~l~~~----~~~~~~~~-~~l~~~~~~~Np~  699 (788)
                      +..+++|+.+++++|+++..    ....+..+ ..+..+++.+|||
T Consensus       274 ~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         274 LAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            44556677777777776643    22222223 4556666666665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.69  E-value=1.1e-17  Score=175.25  Aligned_cols=260  Identities=22%  Similarity=0.254  Sum_probs=132.8

Q ss_pred             EEEcCCcccccC-ccchhHhhhcCCCCCEEeCCCCCCCCc-ccCCCCccCCCCCCCEEEcCCCCCCC------CccHhhh
Q 003893           23 ELYMDDARIALN-TSFLQIIGESMPSIQYLSLSNSSVSNN-SRTLDQGLCPLVHLQELHMADNDLRG------SLPWCLA   94 (788)
Q Consensus        23 ~L~L~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~~~l~~~-~~~l~~~l~~l~~L~~L~L~~n~i~~------~~~~~~~   94 (788)
                      .|+|.+  +.+. +.....+.. +.+|++|+++++.++.. ...++..+...++|++|+++++.+..      ..+..+.
T Consensus         2 ~l~L~~--~~l~~~~~~~~~~~-l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~   78 (319)
T cd00116           2 QLSLKG--ELLKTERATELLPK-LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT   78 (319)
T ss_pred             cccccc--CcccccchHHHHHH-HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH
Confidence            355555  4443 223333444 66788888888776432 11222445666777888887776652      2344566


Q ss_pred             cCCCCCEEeCCCCcCcCCCChhhhcCCCC---CCEEEcCCCcccCccC---ccccCCC-CCccEEEccCCccchhhhccc
Q 003893           95 NMTSLRILDVSSNQLIGSISSSPLIHLTS---IEDLILSDNHFQIPIS---LEPLFNH-SRLKIFDAENNEINAEIIESH  167 (788)
Q Consensus        95 ~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~---L~~L~l~~n~~~~~~~---~~~l~~l-~~L~~L~l~~n~~~~~~~~~~  167 (788)
                      .+++|++|++++|.+.+..+. .+..+.+   |++|++++|++.+...   ...+..+ ++|+.|++++|.+++....  
T Consensus        79 ~~~~L~~L~l~~~~~~~~~~~-~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~--  155 (319)
T cd00116          79 KGCGLQELDLSDNALGPDGCG-VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE--  155 (319)
T ss_pred             hcCceeEEEccCCCCChhHHH-HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH--
Confidence            777888888887776643333 4444444   7777777776652100   0123334 5666666666665422111  


Q ss_pred             cCCCCcccccEEEccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHH---hhcCCCCCEEEccCCcccCcC----
Q 003893          168 SLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWL---LENNTKLRQLSLVNDSLVGPF----  240 (788)
Q Consensus       168 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~----  240 (788)
                                            .++..+..+.+|++|++++|.+++.....+   +..+++|++|++++|.+.+..    
T Consensus       156 ----------------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  213 (319)
T cd00116         156 ----------------------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASAL  213 (319)
T ss_pred             ----------------------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHH
Confidence                                  012233444556666666666654322221   123346666666666554321    


Q ss_pred             ccCccCCCCcCEEEccCCcCcccCChhhhhcC----CCCcEEEeeCCcCCC----CCCccccCCCCCCEEEccCCcCC
Q 003893          241 RLPIHSHKQLRLLDVSKNNFQGHIPLEIGDIL----SRLTVFNISMNALDG----SIPSSFGNMNFLQFLDLSNNQLT  310 (788)
Q Consensus       241 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~----~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~  310 (788)
                      ...+..+++|++|++++|.+++.....+...+    +.|++|++++|.++.    .+...+..+++|+++++++|.+.
T Consensus       214 ~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         214 AETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             HHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            12234455666666666655532222222221    455555555555541    11223334455555555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.58  E-value=5.1e-17  Score=139.52  Aligned_cols=87  Identities=28%  Similarity=0.452  Sum_probs=52.8

Q ss_pred             CCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCC
Q 003893          437 CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQL  516 (788)
Q Consensus       437 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  516 (788)
                      .+.+..++.|.+++|+++ .+|+ .+..+.+|+.|++++|++. ..|..++.++.|+.|++.-|++. ..|..|+.+|.|
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vpp-nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l  104 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPP-NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL  104 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCC-cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence            333444444445555444 2333 4556666677777777766 45566666677777777766665 566667777777


Q ss_pred             CEEEccCCcCC
Q 003893          517 QLLDLSNNNLH  527 (788)
Q Consensus       517 ~~L~L~~n~l~  527 (788)
                      +.||+.+|++.
T Consensus       105 evldltynnl~  115 (264)
T KOG0617|consen  105 EVLDLTYNNLN  115 (264)
T ss_pred             hhhhccccccc
Confidence            77777666654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.56  E-value=7.6e-17  Score=138.48  Aligned_cols=181  Identities=29%  Similarity=0.456  Sum_probs=146.3

Q ss_pred             cccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchh
Q 003893          461 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLH  540 (788)
Q Consensus       461 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~  540 (788)
                      .+.++..++.|.+++|+++ .+|..+..+.+|+.|++.+|++. ..|..++.++.|+.|+++-|++. ..|.-|+...  
T Consensus        28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p--  102 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP--  102 (264)
T ss_pred             cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc--
Confidence            3455677888999999998 56667888999999999999998 78889999999999999988875 4555555443  


Q ss_pred             hhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccc-cCcccccccccCCe
Q 003893          541 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIG-HIPPQIGNLTKIQT  619 (788)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~  619 (788)
                                                                         .|+.|||+.|++.+ ..|..|..++.|+.
T Consensus       103 ---------------------------------------------------~levldltynnl~e~~lpgnff~m~tlra  131 (264)
T KOG0617|consen  103 ---------------------------------------------------ALEVLDLTYNNLNENSLPGNFFYMTTLRA  131 (264)
T ss_pred             ---------------------------------------------------hhhhhhccccccccccCCcchhHHHHHHH
Confidence                                                               78889999888874 56888888999999


Q ss_pred             EeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCC---CcCCcCC
Q 003893          620 LNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATF---NESSYEG  696 (788)
Q Consensus       620 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l---~~~~~~~  696 (788)
                      |+|++|.+. .+|..++++++|+.|.+..|.+. ..|..++.+..|+.|.+.+|+++...|+ ++++.-.   .......
T Consensus       132 lyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe-l~~l~l~~~k~v~r~E~  208 (264)
T KOG0617|consen  132 LYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE-LANLDLVGNKQVMRMEE  208 (264)
T ss_pred             HHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh-hhhhhhhhhHHHHhhhh
Confidence            999999998 77888999999999999999987 6899999999999999999999976665 3433221   2334556


Q ss_pred             CCCC
Q 003893          697 NPFL  700 (788)
Q Consensus       697 Np~~  700 (788)
                      |||.
T Consensus       209 NPwv  212 (264)
T KOG0617|consen  209 NPWV  212 (264)
T ss_pred             CCCC
Confidence            7775

>PLN03150 hypothetical protein; Provisional

Probab=99.47  E-value=9.4e-14  Score=155.69  Aligned_cols=114  Identities=34%  Similarity=0.585  Sum_probs=105.1

Q ss_pred             CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecc
Q 003893          592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  671 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  671 (788)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|..+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcCcccCCCCcccc-CCCCcCCcCCCCCCCCCCC
Q 003893          672 YNNLSGKIPERAAQF-ATFNESSYEGNPFLCGPPL  705 (788)
Q Consensus       672 ~N~l~~~~~~~~~~~-~~l~~~~~~~Np~~C~~~~  705 (788)
                      +|+++|.+|..+... ..+..+++.+|+..|+++.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~  533 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG  533 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence            999999999877553 4556788999999998754

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=1.3e-11  Score=122.80  Aligned_cols=164  Identities=21%  Similarity=0.185  Sum_probs=91.7

Q ss_pred             CCCCCCEEEcCCCCCCCCcc-HhhhcCCCCCEEeCCCCcCcCCCChh-hhcCCCCCCEEEcCCCcccCccCccccCCCCC
Q 003893           71 PLVHLQELHMADNDLRGSLP-WCLANMTSLRILDVSSNQLIGSISSS-PLIHLTSIEDLILSDNHFQIPISLEPLFNHSR  148 (788)
Q Consensus        71 ~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~  148 (788)
                      ++.+|+++.|.++.+..... +....|++++.||||+|-+..--+.. ...++++|+.|+++.|.+........-.    
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~----  194 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL----  194 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh----
Confidence            46667777777776653221 35566777777777777554221211 2345677777777776654222211111    


Q ss_pred             ccEEEccCCccchhhhccccCCCCcccccEEEccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCCE
Q 003893          149 LKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQ  228 (788)
Q Consensus       149 L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  228 (788)
                                                                      .++.|+.|.++.|.++.....++...+|+|+.
T Consensus       195 ------------------------------------------------~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~  226 (505)
T KOG3207|consen  195 ------------------------------------------------LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEV  226 (505)
T ss_pred             ------------------------------------------------hhhhhheEEeccCCCCHHHHHHHHHhCCcHHH
Confidence                                                            23445666666666655555555667777777


Q ss_pred             EEccCCcccCcCccCccCCCCcCEEEccCCcCcccCCh-hhhhcCCCCcEEEeeCCcCCC
Q 003893          229 LSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPL-EIGDILSRLTVFNISMNALDG  287 (788)
Q Consensus       229 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~~L~~L~L~~n~l~~  287 (788)
                      |++..|............+..|++|||++|.+. ..+. ..-..++.|+.|+++.+.+..
T Consensus       227 L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~s  285 (505)
T KOG3207|consen  227 LYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIAS  285 (505)
T ss_pred             hhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcch
Confidence            777777533333334445566777777777665 2221 112235666666666666653

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.13  E-value=3.2e-12  Score=130.93  Aligned_cols=156  Identities=31%  Similarity=0.478  Sum_probs=87.2

Q ss_pred             cccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchh
Q 003893          461 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLH  540 (788)
Q Consensus       461 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~  540 (788)
                      .+..+..|+.+.+..|.+. .+|..+..+..|+.|+++.|++. ..|..++.+| |+.|-+++|+++..++ ..+..   
T Consensus        93 ~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~~lp~-~ig~~---  165 (722)
T KOG0532|consen   93 EACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLTSLPE-EIGLL---  165 (722)
T ss_pred             HHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccccCCc-ccccc---
Confidence            3444445555555555555 45555555666666666666655 4454555444 5566666665543221 11111   


Q ss_pred             hhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeE
Q 003893          541 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTL  620 (788)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  620 (788)
                                                                        ..|..||.+.|.+. ..|..++++.+|+.|
T Consensus       166 --------------------------------------------------~tl~~ld~s~nei~-slpsql~~l~slr~l  194 (722)
T KOG0532|consen  166 --------------------------------------------------PTLAHLDVSKNEIQ-SLPSQLGYLTSLRDL  194 (722)
T ss_pred             --------------------------------------------------hhHHHhhhhhhhhh-hchHHhhhHHHHHHH
Confidence                                                              14555666666665 445556666666666


Q ss_pred             eCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcc
Q 003893          621 NLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG  677 (788)
Q Consensus       621 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~  677 (788)
                      ++..|++.. .|..+..| .|.+||+|.|+++ .+|..|.+++.|++|.|.+|+++.
T Consensus       195 ~vrRn~l~~-lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  195 NVRRNHLED-LPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             HHhhhhhhh-CCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence            666666663 33344432 4566666666666 566666666666666666666663

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.13  E-value=1.9e-12  Score=132.54  Aligned_cols=174  Identities=28%  Similarity=0.465  Sum_probs=150.1

Q ss_pred             ccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccC
Q 003893          466 LTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNN  545 (788)
Q Consensus       466 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~  545 (788)
                      .--...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..+..+..|+.+||+.|+++..++ .+..+        
T Consensus        75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~-~lC~l--------  143 (722)
T KOG0532|consen   75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPD-GLCDL--------  143 (722)
T ss_pred             cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCCh-hhhcC--------
Confidence            33456899999998 78888899999999999999998 788899999999999999999974433 22222        


Q ss_pred             CCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCC
Q 003893          546 GSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN  625 (788)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  625 (788)
                                                                    -|+.|-+++|+++ .+|+.++.+..|..||.+.|
T Consensus       144 ----------------------------------------------pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~n  176 (722)
T KOG0532|consen  144 ----------------------------------------------PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKN  176 (722)
T ss_pred             ----------------------------------------------cceeEEEecCccc-cCCcccccchhHHHhhhhhh
Confidence                                                          3889999999998 77888999999999999999


Q ss_pred             CCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCC
Q 003893          626 NLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLC  701 (788)
Q Consensus       626 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C  701 (788)
                      .+. .+|..++.+.+|+.|.++.|++. ..|+.+..++ |..||+|.|+++ .+|..|..+..+..+.++.||..-
T Consensus       177 ei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  177 EIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence            999 56777999999999999999998 5677777655 899999999999 578778999999999999999874

>PLN03150 hypothetical protein; Provisional

Probab=99.12  E-value=2.2e-10  Score=128.66  Aligned_cols=113  Identities=33%  Similarity=0.502  Sum_probs=101.3

Q ss_pred             CCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCc
Q 003893          515 QLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS  594 (788)
Q Consensus       515 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~  594 (788)
                      .++.|+|++|.+.+.+|..+..+.                                                     +|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~-----------------------------------------------------~L~  445 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLR-----------------------------------------------------HLQ  445 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCC-----------------------------------------------------CCC
Confidence            477899999999988888776665                                                     899


Q ss_pred             eEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcC-CCCcEEecccC
Q 003893          595 GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVEL-NTLAVFSVAYN  673 (788)
Q Consensus       595 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l-~~L~~L~l~~N  673 (788)
                      .|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|+.++++++|++|+|++|++++.+|..+... .++..+++.+|
T Consensus       446 ~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             EEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999988764 46788999999


Q ss_pred             cCcccCC
Q 003893          674 NLSGKIP  680 (788)
Q Consensus       674 ~l~~~~~  680 (788)
                      +..|..|
T Consensus       526 ~~lc~~p  532 (623)
T PLN03150        526 AGLCGIP  532 (623)
T ss_pred             ccccCCC
Confidence            8766444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.09  E-value=2.5e-11  Score=114.37  Aligned_cols=59  Identities=42%  Similarity=0.464  Sum_probs=38.2

Q ss_pred             ccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCC
Q 003893          466 LTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH  527 (788)
Q Consensus       466 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  527 (788)
                      ..|+++|+|+|.|+ .+.++..-.|.++.|++++|.++..  ..+..+++|+.||+++|.++
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls  342 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA  342 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH
Confidence            34667777777776 4455556667777777777776622  23666677777777777665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.09  E-value=1.1e-10  Score=106.52  Aligned_cols=132  Identities=22%  Similarity=0.310  Sum_probs=46.0

Q ss_pred             CCCCCCccEEEcCCcccccCccchhHhhhcCCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhh
Q 003893           15 FPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLA   94 (788)
Q Consensus        15 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~   94 (788)
                      +.+..++++|+|++  +.+...  ..++..+.+|+.|++++|.|...     +.+..+++|++|++++|++++..+....
T Consensus        15 ~~n~~~~~~L~L~~--n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l-----~~l~~L~~L~~L~L~~N~I~~i~~~l~~   85 (175)
T PF14580_consen   15 YNNPVKLRELNLRG--NQISTI--ENLGATLDKLEVLDLSNNQITKL-----EGLPGLPRLKTLDLSNNRISSISEGLDK   85 (175)
T ss_dssp             -------------------------S--TT-TT--EEE-TTS--S-------TT----TT--EEE--SS---S-CHHHHH
T ss_pred             cccccccccccccc--cccccc--cchhhhhcCCCEEECCCCCCccc-----cCccChhhhhhcccCCCCCCccccchHH
Confidence            44556678888888  333222  22332266788888888877643     3567778888888888888754332234


Q ss_pred             cCCCCCEEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCc--cccCCCCCccEEEcc
Q 003893           95 NMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISL--EPLFNHSRLKIFDAE  155 (788)
Q Consensus        95 ~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~--~~l~~l~~L~~L~l~  155 (788)
                      .+++|++|++++|+|...-....+..+++|++|++.+|+++.....  ..+..+++|+.||-.
T Consensus        86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            6788888888888776433333567788888888888877633221  134457777777643

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.05  E-value=2.1e-11  Score=117.92  Aligned_cols=92  Identities=21%  Similarity=0.204  Sum_probs=43.7

Q ss_pred             ccCCCCCcEEEecCCCCCccCc---hHHhhcCCCCCEEEccCCcccCcC----ccCccCCCCcCEEEccCCcCcccCChh
Q 003893          195 LYNQHDLEYVRLSHIKMNEEFP---NWLLENNTKLRQLSLVNDSLVGPF----RLPIHSHKQLRLLDVSKNNFQGHIPLE  267 (788)
Q Consensus       195 l~~~~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~  267 (788)
                      +..++.|+.+.+..|.+.....   ..-+..|++|+.|+|.+|.++...    ...+..++.|++|++++|.+.......
T Consensus       181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a  260 (382)
T KOG1909|consen  181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA  260 (382)
T ss_pred             HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence            3444566666666665533222   111345666666666666554321    233444555555555555554332222


Q ss_pred             hh----hcCCCCcEEEeeCCcCC
Q 003893          268 IG----DILSRLTVFNISMNALD  286 (788)
Q Consensus       268 ~~----~~~~~L~~L~L~~n~l~  286 (788)
                      +.    ...|.|++|.+.+|.++
T Consensus       261 ~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  261 FVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             HHHHHhccCCCCceeccCcchhH
Confidence            22    12344555555555444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.05  E-value=1.1e-10  Score=106.45  Aligned_cols=108  Identities=28%  Similarity=0.406  Sum_probs=46.0

Q ss_pred             CCCCCEEeCCCCCCCCcccCCCCccC-CCCCCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhh-cCCC
Q 003893           45 MPSIQYLSLSNSSVSNNSRTLDQGLC-PLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPL-IHLT  122 (788)
Q Consensus        45 l~~L~~L~L~~~~l~~~~~~l~~~l~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l-~~l~  122 (788)
                      ...+|.|+|+++.|..+     +.++ .+.+|+.|+|++|.++..  +.+..+++|++|++++|.|+ .+.. .+ ..++
T Consensus        18 ~~~~~~L~L~~n~I~~I-----e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~-~l~~~lp   88 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTI-----ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISE-GLDKNLP   88 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CH-HHHHH-T
T ss_pred             ccccccccccccccccc-----cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-cccc-chHHhCC
Confidence            45689999999998654     3465 588999999999999865  35888999999999999998 5654 44 4699


Q ss_pred             CCCEEEcCCCcccCccCccccCCCCCccEEEccCCccch
Q 003893          123 SIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINA  161 (788)
Q Consensus       123 ~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~  161 (788)
                      +|++|++++|++........++.+++|+.|++.+|++..
T Consensus        89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            999999999999866666778899999999999999864

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.04  E-value=2.6e-10  Score=122.78  Aligned_cols=199  Identities=33%  Similarity=0.454  Sum_probs=107.1

Q ss_pred             EEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCc
Q 003893          398 HIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNH  477 (788)
Q Consensus       398 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~  477 (788)
                      .+....+.+... .......+.++.|++.+|.++...+......                        ++|+.|++++|.
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~------------------------~nL~~L~l~~N~  151 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPLIGLLK------------------------SNLKELDLSDNK  151 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccccCccccccch------------------------hhcccccccccc
Confidence            466666655322 2233444667777777777763333222221                        255566666665


Q ss_pred             cCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCccccee
Q 003893          478 LNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFV  557 (788)
Q Consensus       478 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  557 (788)
                      +. .+|..+..+++|+.|++++|++. .++......+.|+.|++++|++....+..                        
T Consensus       152 i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~------------------------  205 (394)
T COG4886         152 IE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEI------------------------  205 (394)
T ss_pred             hh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchhh------------------------
Confidence            55 33344555666666666666665 33333335556666666666655332211                        


Q ss_pred             ecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCC
Q 003893          558 IMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSN  637 (788)
Q Consensus       558 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  637 (788)
                                                    ..+..|++|++++|.+. ..+..+..+.++..|.+++|++.. .+..++.
T Consensus       206 ------------------------------~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~  253 (394)
T COG4886         206 ------------------------------ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGN  253 (394)
T ss_pred             ------------------------------hhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhcc
Confidence                                          01124556666666433 334455666666666666666652 2455566


Q ss_pred             CCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCC
Q 003893          638 LRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE  681 (788)
Q Consensus       638 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  681 (788)
                      ++++++|++++|.++...+  +..+.+++.|++++|.++...|.
T Consensus       254 l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         254 LSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             ccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence            6666666666666663332  55666666666666666655444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=4.6e-11  Score=118.86  Aligned_cols=163  Identities=26%  Similarity=0.226  Sum_probs=91.4

Q ss_pred             hcCCCCCEEEccCCcccCcCc-cCccCCCCcCEEEccCCcCcccCC-hhhhhcCCCCcEEEeeCCcCCCCCCc-cccCCC
Q 003893          221 ENNTKLRQLSLVNDSLVGPFR-LPIHSHKQLRLLDVSKNNFQGHIP-LEIGDILSRLTVFNISMNALDGSIPS-SFGNMN  297 (788)
Q Consensus       221 ~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~  297 (788)
                      .++.+|+++.|.++....... .....|++++.||++.|-+....+ ..+.+.+|+|+.|+++.|++..-... .-..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            456677777777766543322 244567777888888776653221 22344577777777777776522111 123556


Q ss_pred             CCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCC-ccCCCCCCCcEEE
Q 003893          298 FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIP-QSLSKCSSLQGLF  376 (788)
Q Consensus       298 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~  376 (788)
                      +|+.|.++.|.++-.--......+|+|+.|++..|...........-+..|++|+|++|.+..... .....++.|+.|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            777777777776522222233346777777777764332333333345666777777666653211 2344556666666


Q ss_pred             cccCcCC
Q 003893          377 LSNNSLS  383 (788)
Q Consensus       377 l~~n~l~  383 (788)
                      ++.+.+.
T Consensus       278 ls~tgi~  284 (505)
T KOG3207|consen  278 LSSTGIA  284 (505)
T ss_pred             ccccCcc
Confidence            6666554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.99  E-value=9e-11  Score=110.74  Aligned_cols=84  Identities=30%  Similarity=0.273  Sum_probs=45.6

Q ss_pred             CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccC-chhhhcCCCCcEEec
Q 003893          592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKI-PYQLVELNTLAVFSV  670 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~l  670 (788)
                      +|+.||||+|.++.. ..+-..+-+.+.|.|++|.|...  ++++.+-+|..||+++|+|.... -..+++++-|+.+.+
T Consensus       330 ~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L  406 (490)
T KOG1259|consen  330 QLQLLDLSGNLLAEC-VGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRL  406 (490)
T ss_pred             cceEeecccchhHhh-hhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhh
Confidence            566666666666522 22333455666666666666522  34555566666666666664221 224555566666666


Q ss_pred             ccCcCccc
Q 003893          671 AYNNLSGK  678 (788)
Q Consensus       671 ~~N~l~~~  678 (788)
                      .+|++.+.
T Consensus       407 ~~NPl~~~  414 (490)
T KOG1259|consen  407 TGNPLAGS  414 (490)
T ss_pred             cCCCcccc
Confidence            66666543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.96  E-value=1e-09  Score=118.13  Aligned_cols=60  Identities=32%  Similarity=0.470  Sum_probs=25.9

Q ss_pred             CccCceeccCccCcccCCccCCCCC-CCcEEEcccCcCCCCCCccccCCCCccEEEccCCeec
Q 003893          346 TNLIWLQLEGNHFVGEIPQSLSKCS-SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE  407 (788)
Q Consensus       346 ~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  407 (788)
                      +.++.|++.+|.+. .++....... +|+.|++++|.+. .+|..+..+++|+.|++++|++.
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~  176 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS  176 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh
Confidence            44555555555554 2233233332 4555555555444 22223344444444444444443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.95  E-value=1.4e-10  Score=112.27  Aligned_cols=235  Identities=18%  Similarity=0.165  Sum_probs=141.8

Q ss_pred             cccCCCCCcEEEecCCCCCccCchHH---hhcCCCCCEEEccCCcccCcC-----------ccCccCCCCcCEEEccCCc
Q 003893          194 FLYNQHDLEYVRLSHIKMNEEFPNWL---LENNTKLRQLSLVNDSLVGPF-----------RLPIHSHKQLRLLDVSKNN  259 (788)
Q Consensus       194 ~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~-----------~~~~~~~~~L~~L~l~~n~  259 (788)
                      .+.....++.+++++|.+......++   +.+.++|+..++++- ++|..           ...+..++.|+++|||+|-
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            34456677888888887755444443   234455666555542 22211           1234456678888888887


Q ss_pred             CcccCChhhhh---cCCCCcEEEeeCCcCCCCCC-------------ccccCCCCCCEEEccCCcCCCccc----hHHhh
Q 003893          260 FQGHIPLEIGD---ILSRLTVFNISMNALDGSIP-------------SSFGNMNFLQFLDLSNNQLTGEIP----EHLAM  319 (788)
Q Consensus       260 l~~~~~~~~~~---~~~~L~~L~L~~n~l~~~~~-------------~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~  319 (788)
                      +.-..+..+..   .+..|++|.|.+|.+.....             .-...-+.|+.+...+|++. ..+    ...++
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle-n~ga~~~A~~~~  182 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE-NGGATALAEAFQ  182 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc-cccHHHHHHHHH
Confidence            65444444332   25577888888887652211             12334567888888888776 333    22344


Q ss_pred             CCCCCcEEEccccccCccc----cccccCCCccCceeccCccCccc----CCccCCCCCCCcEEEcccCcCCCCCCccc-
Q 003893          320 GCVSLRSLALSNNNLEGHM----FSRNFNLTNLIWLQLEGNHFVGE----IPQSLSKCSSLQGLFLSNNSLSGKIPRWL-  390 (788)
Q Consensus       320 ~l~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-  390 (788)
                      ..+.|+.+.++.|.|....    ...+..++.|+.|||.+|.++..    +...++.+++|+.|++++|.+.......+ 
T Consensus       183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~  262 (382)
T KOG1909|consen  183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV  262 (382)
T ss_pred             hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence            5678888888888765332    23455778888888888877642    23456667778888888877765444333 


Q ss_pred             ----cCCCCccEEEccCCeeccCch----hhhhcccCCcEEeccCCcC
Q 003893          391 ----GNLTVLRHIIMPKNHIEGPIP----LEFCQLRILQILDISDNNI  430 (788)
Q Consensus       391 ----~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~~  430 (788)
                          ...++|+.|.+.+|.++....    ..+...+.|..|++++|.+
T Consensus       263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence                225677777777777764322    2234456777777777766

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.86  E-value=1e-09  Score=82.04  Aligned_cols=60  Identities=48%  Similarity=0.646  Sum_probs=34.6

Q ss_pred             CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCccc
Q 003893          592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL  651 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  651 (788)
                      +|++|++++|+++...+..|.++++|++|++++|+++.+.|..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455566666665555555555555666666665555555555555555555555555543

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.84  E-value=1.5e-09  Score=81.25  Aligned_cols=61  Identities=39%  Similarity=0.573  Sum_probs=56.8

Q ss_pred             ccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcC
Q 003893          615 TKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNL  675 (788)
Q Consensus       615 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l  675 (788)
                      ++|++|++++|+++.+.+..|.++++|++|++++|.++...|..|..+++|+.|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5789999999999988888999999999999999999988888999999999999999975

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.83  E-value=3.1e-09  Score=121.83  Aligned_cols=132  Identities=24%  Similarity=0.290  Sum_probs=86.2

Q ss_pred             CCCCccEEEcCCcccccCccchhHhhhcCCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcC
Q 003893           17 HFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANM   96 (788)
Q Consensus        17 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l   96 (788)
                      .++.|++|-+.+|.- +....+..+...++.||+|||++|.-.+   .+|+.++.+-+||+|+++++.+. .+|..++++
T Consensus       543 ~~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~~~l~---~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~L  617 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGNSSLS---KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNL  617 (889)
T ss_pred             CCCccceEEEeecch-hhhhcCHHHHhhCcceEEEECCCCCccC---cCChHHhhhhhhhcccccCCCcc-ccchHHHHH
Confidence            445677777777221 2233344444448888888888865332   45578888888888888888887 778888888


Q ss_pred             CCCCEEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCccc-CccCccccCCCCCccEEEc
Q 003893           97 TSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ-IPISLEPLFNHSRLKIFDA  154 (788)
Q Consensus        97 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~l~~l~~L~~L~l  154 (788)
                      +.|.+||+..+.....++. ....+++|++|.+...... +......+.++++|+.+..
T Consensus       618 k~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  618 KKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             Hhhheeccccccccccccc-hhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            8888888888765544443 5556888888888765421 1222233445555555554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.78  E-value=6.9e-10  Score=119.40  Aligned_cols=85  Identities=26%  Similarity=0.305  Sum_probs=56.8

Q ss_pred             CceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCcc---Cchh-hhcCCCCcEE
Q 003893          593 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK---IPYQ-LVELNTLAVF  668 (788)
Q Consensus       593 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~-l~~l~~L~~L  668 (788)
                      |+.+++++|++. ..+..+..+..+..|++++|++...  ..+...+.+..+..+.|.+...   .... ....+.+...
T Consensus       234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (414)
T KOG0531|consen  234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL  310 (414)
T ss_pred             HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence            677888888877 3335567778888888888888743  3355567777777787776522   1111 3445677788


Q ss_pred             ecccCcCcccCC
Q 003893          669 SVAYNNLSGKIP  680 (788)
Q Consensus       669 ~l~~N~l~~~~~  680 (788)
                      .+.+|+.....+
T Consensus       311 ~~~~~~~~~~~~  322 (414)
T KOG0531|consen  311 TLELNPIRKISS  322 (414)
T ss_pred             ccccCccccccc
Confidence            888887776554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.70  E-value=1.8e-09  Score=116.22  Aligned_cols=263  Identities=26%  Similarity=0.222  Sum_probs=149.3

Q ss_pred             CccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEec
Q 003893          346 TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI  425 (788)
Q Consensus       346 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  425 (788)
                      +.++.++...+.+...... ...+..++.+.+..|.+.. ....+..+++|+.+++.+|.+..+.. .+..+++|++|++
T Consensus        49 ~~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~l  125 (414)
T KOG0531|consen   49 SDLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDL  125 (414)
T ss_pred             chhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheec
Confidence            3445555544433321111 1345556666666666652 23335556666777777776653322 1455666666666


Q ss_pred             cCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCccc
Q 003893          426 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGE  505 (788)
Q Consensus       426 ~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~  505 (788)
                      ++|.|+..                        .  .+..++.|+.|++++|.|+..  ..+..+++|+.+++++|.+...
T Consensus       126 s~N~I~~i------------------------~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~i  177 (414)
T KOG0531|consen  126 SFNKITKL------------------------E--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDI  177 (414)
T ss_pred             cccccccc------------------------c--chhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhh
Confidence            66666421                        1  244455577777777777633  3455567777777777777633


Q ss_pred             Cc-ccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceec
Q 003893          506 VP-IQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYT  584 (788)
Q Consensus       506 ~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  584 (788)
                      -+ . ...+.+++.+++.+|.+.........                                                 
T Consensus       178 e~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~-------------------------------------------------  207 (414)
T KOG0531|consen  178 ENDE-LSELISLEELDLGGNSIREIEGLDLL-------------------------------------------------  207 (414)
T ss_pred             hhhh-hhhccchHHHhccCCchhcccchHHH-------------------------------------------------
Confidence            33 2 45667777777777776533211110                                                 


Q ss_pred             ccCCccCCCceEECCCCcccccCccccccccc--CCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcC
Q 003893          585 YQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTK--IQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVEL  662 (788)
Q Consensus       585 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l  662 (788)
                            ..+..+++..|.++...+  +..+..  |+.+++++|++.. .++.+..+..+..|++++|++...-  .+...
T Consensus       208 ------~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~  276 (414)
T KOG0531|consen  208 ------KKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLE--GLERL  276 (414)
T ss_pred             ------HHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhccccccc--ccccc
Confidence                  023344777777764332  223333  8889999999883 3366777888999999999887432  34445


Q ss_pred             CCCcEEecccCcCccc---CCCC-ccccCCCCcCCcCCCCCC
Q 003893          663 NTLAVFSVAYNNLSGK---IPER-AAQFATFNESSYEGNPFL  700 (788)
Q Consensus       663 ~~L~~L~l~~N~l~~~---~~~~-~~~~~~l~~~~~~~Np~~  700 (788)
                      ..+..+....|.+...   .... ......+....+.+||..
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (414)
T KOG0531|consen  277 PKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIR  318 (414)
T ss_pred             chHHHhccCcchhcchhhhhccccccccccccccccccCccc
Confidence            6666677777766522   1110 233445555556666543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.68  E-value=8.5e-09  Score=118.36  Aligned_cols=128  Identities=27%  Similarity=0.301  Sum_probs=70.5

Q ss_pred             CCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccc--cCccccccccCCCccCceeccCccCcccCCccCCCCCCCcE
Q 003893          297 NFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN--LEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQG  374 (788)
Q Consensus       297 ~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  374 (788)
                      ...+...+-+|.+. .++...  .++.|++|-+..|.  +.......|..++.|+.||+++|.-.+.+|..++.+-+|+.
T Consensus       523 ~~~rr~s~~~~~~~-~~~~~~--~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIE-HIAGSS--ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY  599 (889)
T ss_pred             hheeEEEEeccchh-hccCCC--CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence            44555555555554 444433  24456666665554  33333333455666666666665555556666666666666


Q ss_pred             EEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCC
Q 003893          375 LFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDN  428 (788)
Q Consensus       375 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  428 (788)
                      |++++..+. .+|..+.++..|.+|++..+......+.....+.+|++|.+...
T Consensus       600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            666666665 55566666666666666655544344444455666666665543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.61  E-value=9.1e-10  Score=116.25  Aligned_cols=129  Identities=24%  Similarity=0.315  Sum_probs=94.8

Q ss_pred             cccceEeeecCceecc-cCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCC
Q 003893          570 ILESFDFTTKSITYTY-QGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSY  648 (788)
Q Consensus       570 ~l~~l~~~~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  648 (788)
                      .+...++++|.+..+. .-.+.+.++.|||++|+++..  +.+..++.|++|||++|.++...--...++. |+.|.+++
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN  241 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence            3444455555544332 234556899999999999854  3789999999999999999944332334444 99999999


Q ss_pred             cccCccCchhhhcCCCCcEEecccCcCcccCC-CCccccCCCCcCCcCCCCCCCCC
Q 003893          649 NKLSWKIPYQLVELNTLAVFSVAYNNLSGKIP-ERAAQFATFNESSYEGNPFLCGP  703 (788)
Q Consensus       649 N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~~~~~~Np~~C~~  703 (788)
                      |.++..  ..+.++.+|+.||+++|-+.+... ..+..+..+..+.+.|||..|.+
T Consensus       242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            999843  467889999999999998876433 22345666788899999999964

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=1.1e-09  Score=103.47  Aligned_cols=159  Identities=24%  Similarity=0.207  Sum_probs=103.1

Q ss_pred             CCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCcCEEEccCC-cCcccCChhhhhcCCCCcE
Q 003893          199 HDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKN-NFQGHIPLEIGDILSRLTV  277 (788)
Q Consensus       199 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~L~~  277 (788)
                      ..|+++|++...++..-...++..|.+|+.|.+.++++.+.+...+....+|+.|+++.+ +++......++..++.|.+
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            468999999988877666677889999999999999998888888888899999999987 4543333344556788889


Q ss_pred             EEeeCCcCCCCCCcc-cc-CCCCCCEEEccCCcCC--CccchHHhhCCCCCcEEEccccc-cCccccccccCCCccCcee
Q 003893          278 FNISMNALDGSIPSS-FG-NMNFLQFLDLSNNQLT--GEIPEHLAMGCVSLRSLALSNNN-LEGHMFSRNFNLTNLIWLQ  352 (788)
Q Consensus       278 L~L~~n~l~~~~~~~-~~-~l~~L~~L~L~~n~i~--~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~  352 (788)
                      |++++|.+....-.. .. --++|+.|+++++.-.  ..--..+...|++|.+||++.|. ++......|..++.|++|.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            999988766432211 11 1246777777765311  11112233456677777776553 2222223344555555555


Q ss_pred             ccCcc
Q 003893          353 LEGNH  357 (788)
Q Consensus       353 l~~n~  357 (788)
                      ++.|.
T Consensus       345 lsRCY  349 (419)
T KOG2120|consen  345 LSRCY  349 (419)
T ss_pred             hhhhc
Confidence            55553

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=2.9e-09  Score=100.74  Aligned_cols=180  Identities=18%  Similarity=0.162  Sum_probs=93.7

Q ss_pred             CCCEEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCccccCCCCCccEEEccCCcc-chhhhccccCCCCcccc
Q 003893           98 SLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEI-NAEIIESHSLTTPNFQL  176 (788)
Q Consensus        98 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~-~~~~~~~~~~~~~~~~L  176 (788)
                      +|++||||+..|+..---..+.+|.+|+.|.+.++++...+. ..+++-.+|+.|+++++.- +....            
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~-~~iAkN~~L~~lnlsm~sG~t~n~~------------  252 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV-NTIAKNSNLVRLNLSMCSGFTENAL------------  252 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH-HHHhccccceeeccccccccchhHH------------
Confidence            466666666655422222234556666666666666654433 2455566666666666541 11100            


Q ss_pred             cEEEccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhc-CCCCCEEEccCCcc---cCcCccCccCCCCcCE
Q 003893          177 QSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLEN-NTKLRQLSLVNDSL---VGPFRLPIHSHKQLRL  252 (788)
Q Consensus       177 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~---~~~~~~~~~~~~~L~~  252 (788)
                                     -..+..|+.|..|+++.|..+.+........ -++|+.|+++++.-   ......-...+++|.+
T Consensus       253 ---------------~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~  317 (419)
T KOG2120|consen  253 ---------------QLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVH  317 (419)
T ss_pred             ---------------HHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceee
Confidence                           0123445556666666665543332222222 24566666665531   1111112245677777


Q ss_pred             EEccCCc-CcccCChhhhhcCCCCcEEEeeCCcCCCCCCcc---ccCCCCCCEEEccCCc
Q 003893          253 LDVSKNN-FQGHIPLEIGDILSRLTVFNISMNALDGSIPSS---FGNMNFLQFLDLSNNQ  308 (788)
Q Consensus       253 L~l~~n~-l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~n~  308 (788)
                      ||+++|. ++...-..+++ ++.|++|.++.|-.  ++|..   +...|.|.+|++.++-
T Consensus       318 LDLSD~v~l~~~~~~~~~k-f~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  318 LDLSDSVMLKNDCFQEFFK-FNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             eccccccccCchHHHHHHh-cchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            7777764 33222223333 67788888887753  34443   5667888888887763

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=1.8e-07  Score=88.90  Aligned_cols=224  Identities=19%  Similarity=0.141  Sum_probs=125.2

Q ss_pred             CCCEEEccCCcCCCccc-hHHhhCCCCCcEEEccccccCccc--cccccCCCccCceeccCccCcccCCccCCCCCCCcE
Q 003893          298 FLQFLDLSNNQLTGEIP-EHLAMGCVSLRSLALSNNNLEGHM--FSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQG  374 (788)
Q Consensus       298 ~L~~L~L~~n~i~~~~~-~~~~~~l~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  374 (788)
                      .++.|.+.++.|..... ..+...+..++++|+.+|.|+...  ...+.++|.|+.|+++.|.+...+...-....+|++
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            44455555555542221 222334566777777777766422  223346777788888777776433322135667788


Q ss_pred             EEcccCcCCCC-CCccccCCCCccEEEccCCeeccCc--hhhhhc-ccCCcEEeccCCcCCCCC--CC-CCCCCcccEEE
Q 003893          375 LFLSNNSLSGK-IPRWLGNLTVLRHIIMPKNHIEGPI--PLEFCQ-LRILQILDISDNNISGSL--PS-CYDFVCIEQVH  447 (788)
Q Consensus       375 L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~--~~~~~~-l~~L~~L~l~~n~~~~~~--~~-~~~~~~L~~L~  447 (788)
                      |.+.+..+.-. ....+..+|.+++|+++.|......  ...... -+.+++|....|....-.  .. ...++++..+.
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~  205 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF  205 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence            87777665422 2234456777777777777433211  111111 123444444444221000  00 01256677777


Q ss_pred             ccCcccccccCcccccccccccEEeCCCCccCCC-CCccccCCcCCcEEEccCccCcccCcc------cccCCCCCCEEE
Q 003893          448 LSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGN-IPDRVDGLSQLSYLILAHNNLEGEVPI------QLCRLNQLQLLD  520 (788)
Q Consensus       448 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~  520 (788)
                      +..|++...-....+..+|.+..|+++.++|..- .-+.+.++++|+.|.++++++......      .++.+++++.|+
T Consensus       206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             eecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            7777766555555666777777888888887632 224567788888888888887633321      246677777776


Q ss_pred             c
Q 003893          521 L  521 (788)
Q Consensus       521 L  521 (788)
                      =
T Consensus       286 G  286 (418)
T KOG2982|consen  286 G  286 (418)
T ss_pred             C
Confidence            3

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.21  E-value=8.5e-08  Score=95.53  Aligned_cols=303  Identities=18%  Similarity=0.100  Sum_probs=169.2

Q ss_pred             CCccEEEcCCcccccCc-cchhHhhhcCCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCC-CCCCccH-hhhc
Q 003893           19 KSLKELYMDDARIALNT-SFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADND-LRGSLPW-CLAN   95 (788)
Q Consensus        19 ~~L~~L~L~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~-i~~~~~~-~~~~   95 (788)
                      ..||.|.+.+  +.-.+ .-...+...+++++.|++.+|....... +...-..+++|++|+|..|. +++..-. ....
T Consensus       138 g~lk~LSlrG--~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s-~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g  214 (483)
T KOG4341|consen  138 GFLKELSLRG--CRAVGDSSLRTFASNCPNIEHLALYGCKKITDSS-LLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG  214 (483)
T ss_pred             cccccccccc--cccCCcchhhHHhhhCCchhhhhhhcceeccHHH-HHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence            3578888888  54211 1223333348888888888876211110 00112457788888888863 4433323 2347


Q ss_pred             CCCCCEEeCCCCc-CcCCCChhhhcCCCCCCEEEcCCCcccCccCccc----cCCCCCccEEEccCCc-cchhhhccccC
Q 003893           96 MTSLRILDVSSNQ-LIGSISSSPLIHLTSIEDLILSDNHFQIPISLEP----LFNHSRLKIFDAENNE-INAEIIESHSL  169 (788)
Q Consensus        96 l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~----l~~l~~L~~L~l~~n~-~~~~~~~~~~~  169 (788)
                      +++|++|+++.+. +++.--..-+..+..++.+.+.+|.=   .+...    -+.+.-+..+++..+. +++...-.  .
T Consensus       215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e---~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~--i  289 (483)
T KOG4341|consen  215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE---LELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL--I  289 (483)
T ss_pred             hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccc---ccHHHHHHHhccChHhhccchhhhccccchHHHH--H
Confidence            8888888888774 22211111345566677776665531   11111    1233444455544443 33222110  0


Q ss_pred             CCCcccccEEEccCCCcCCccCCccc-cCCCCCcEEEecCCC-CCccCchHHhhcCCCCCEEEccCCcccCc--CccCcc
Q 003893          170 TTPNFQLQSLLLSSGYRDGITFPKFL-YNQHDLEYVRLSHIK-MNEEFPNWLLENNTKLRQLSLVNDSLVGP--FRLPIH  245 (788)
Q Consensus       170 ~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~  245 (788)
                      ......++.+..++....+......+ ..+++|+.+.++.|+ +++.....+..+++.|+.+++..+.....  ....-.
T Consensus       290 ~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~  369 (483)
T KOG4341|consen  290 ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSR  369 (483)
T ss_pred             hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhcc
Confidence            11122566777644444333333334 467899999999987 44444455567889999999998865432  222335


Q ss_pred             CCCCcCEEEccCCcC-cccC---ChhhhhcCCCCcEEEeeCCcCCC-CCCccccCCCCCCEEEccCCcCC-CccchHHhh
Q 003893          246 SHKQLRLLDVSKNNF-QGHI---PLEIGDILSRLTVFNISMNALDG-SIPSSFGNMNFLQFLDLSNNQLT-GEIPEHLAM  319 (788)
Q Consensus       246 ~~~~L~~L~l~~n~l-~~~~---~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~  319 (788)
                      +++.|+++.++.|.. ++..   -.........++.+.+++++... ..-+.+..+++|+.+++-+++-. .+--..+..
T Consensus       370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~  449 (483)
T KOG4341|consen  370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFAT  449 (483)
T ss_pred             CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHh
Confidence            789999999998854 2210   01111235689999999998653 23345678899999999887532 122223334


Q ss_pred             CCCCCcEEEc
Q 003893          320 GCVSLRSLAL  329 (788)
Q Consensus       320 ~l~~L~~L~l  329 (788)
                      ++|+++...+
T Consensus       450 ~lp~i~v~a~  459 (483)
T KOG4341|consen  450 HLPNIKVHAY  459 (483)
T ss_pred             hCccceehhh
Confidence            5677665543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.20  E-value=8.1e-08  Score=80.37  Aligned_cols=82  Identities=23%  Similarity=0.338  Sum_probs=38.9

Q ss_pred             CceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEeccc
Q 003893          593 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAY  672 (788)
Q Consensus       593 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~  672 (788)
                      |+..+|++|.+....++.-...+..+.|+|++|.|+ .+|..+..++.|+.|+++.|++. ..|..+..+.++..|+..+
T Consensus        55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~  132 (177)
T KOG4579|consen   55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPE  132 (177)
T ss_pred             EEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCC
Confidence            334444444444222222222334555555555555 23444555555555555555555 3444444455555555555


Q ss_pred             CcCc
Q 003893          673 NNLS  676 (788)
Q Consensus       673 N~l~  676 (788)
                      |.+.
T Consensus       133 na~~  136 (177)
T KOG4579|consen  133 NARA  136 (177)
T ss_pred             Cccc
Confidence            5443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.18  E-value=1e-07  Score=95.02  Aligned_cols=110  Identities=14%  Similarity=-0.002  Sum_probs=55.9

Q ss_pred             CCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCC-CCCCccHhh-hcCCCCCEEeCCCCc-CcCCCChhhhcCCCC
Q 003893           47 SIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADND-LRGSLPWCL-ANMTSLRILDVSSNQ-LIGSISSSPLIHLTS  123 (788)
Q Consensus        47 ~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~  123 (788)
                      .||.|.++|+.-.+. ..+-....+++++++|++.+|. +++..-..+ ..+++|++|++..|. +++..-..-...+++
T Consensus       139 ~lk~LSlrG~r~v~~-sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGD-SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             ccccccccccccCCc-chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            467777777753222 1111223467777777777774 333322233 367777777777753 221111111234777


Q ss_pred             CCEEEcCCCcc-cCccCccccCCCCCccEEEccCC
Q 003893          124 IEDLILSDNHF-QIPISLEPLFNHSRLKIFDAENN  157 (788)
Q Consensus       124 L~~L~l~~n~~-~~~~~~~~l~~l~~L~~L~l~~n  157 (788)
                      |++++++.+.- ++.---....+++.++.+.+++|
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC  252 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC  252 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhccc
Confidence            77777777652 22111112344555666655544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.08  E-value=4.7e-08  Score=103.63  Aligned_cols=178  Identities=24%  Similarity=0.198  Sum_probs=117.3

Q ss_pred             ChhhhhcCCCCcEEEeeCCcCCCCCCccccCC-CCCCEEEccCCcCC----------CccchHHhhCCCCCcEEEccccc
Q 003893          265 PLEIGDILSRLTVFNISMNALDGSIPSSFGNM-NFLQFLDLSNNQLT----------GEIPEHLAMGCVSLRSLALSNNN  333 (788)
Q Consensus       265 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~i~----------~~~~~~~~~~l~~L~~L~l~~n~  333 (788)
                      |..++. +.+|++|.+.+|.+..  ...+..+ ..|++|-..+ .+.          +.+.....  .-.|...+.++|.
T Consensus       102 pi~ifp-F~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~--Wn~L~~a~fsyN~  175 (1096)
T KOG1859|consen  102 PISIFP-FRSLRVLELRGCDLST--AKGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPV--WNKLATASFSYNR  175 (1096)
T ss_pred             Cceecc-ccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchh--hhhHhhhhcchhh
Confidence            445555 6788888888887763  1112111 2344443322 111          11111111  1257788888888


Q ss_pred             cCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhh
Q 003893          334 LEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLE  413 (788)
Q Consensus       334 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  413 (788)
                      +.. ....+.-++.|+.|+|++|+++...  .+..++.|++||+++|.+....--...++. |..|.+++|.++..  ..
T Consensus       176 L~~-mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~g  249 (1096)
T KOG1859|consen  176 LVL-MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RG  249 (1096)
T ss_pred             HHh-HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hh
Confidence            774 3345566789999999999998543  788899999999999998843323333444 99999999988733  45


Q ss_pred             hhcccCCcEEeccCCcCCCC--CCCCCCCCcccEEEccCcccc
Q 003893          414 FCQLRILQILDISDNNISGS--LPSCYDFVCIEQVHLSKNMLH  454 (788)
Q Consensus       414 ~~~l~~L~~L~l~~n~~~~~--~~~~~~~~~L~~L~l~~n~~~  454 (788)
                      +.++.+|+.||+++|-+.+.  +...+.+..|..|.+.+|.+.
T Consensus       250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            77899999999999977643  223344677888888888764

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.06  E-value=1.4e-06  Score=81.85  Aligned_cols=88  Identities=15%  Similarity=0.070  Sum_probs=41.7

Q ss_pred             CCCcEEEecCCCCCccCchHH----hhcCCCCCEEEccCCcccCcC----ccCccCCCCcCEEEccCCcCcccCChhhhh
Q 003893          199 HDLEYVRLSHIKMNEEFPNWL----LENNTKLRQLSLVNDSLVGPF----RLPIHSHKQLRLLDVSKNNFQGHIPLEIGD  270 (788)
Q Consensus       199 ~~L~~L~l~~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  270 (788)
                      ..|+.+.+..|.+.......+    +..+.+|+.|++..|.++...    ...+...+.|++|.+.+|-++......+++
T Consensus       185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~  264 (388)
T COG5238         185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLR  264 (388)
T ss_pred             cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHH
Confidence            356666666665543221111    123456666666666554321    122333445666666666555433333332


Q ss_pred             c-----CCCCcEEEeeCCcCC
Q 003893          271 I-----LSRLTVFNISMNALD  286 (788)
Q Consensus       271 ~-----~~~L~~L~L~~n~l~  286 (788)
                      .     .|+|..|-..+|.+.
T Consensus       265 ~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         265 RFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             HhhhhcCCCccccccchhhhc
Confidence            1     345555555555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.06  E-value=9.8e-07  Score=84.00  Aligned_cols=86  Identities=21%  Similarity=0.316  Sum_probs=51.1

Q ss_pred             CCCCCCEEEcCCCCCCCC--ccHhhhcCCCCCEEeCCCCcCcCCCChhhh-cCCCCCCEEEcCCCcccCccCccccCCCC
Q 003893           71 PLVHLQELHMADNDLRGS--LPWCLANMTSLRILDVSSNQLIGSISSSPL-IHLTSIEDLILSDNHFQIPISLEPLFNHS  147 (788)
Q Consensus        71 ~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~~l~~l~  147 (788)
                      .+++++++||.+|.|++-  +...+.++|.|++|+++.|.+...|..  + ....+|++|-|.+..+.-......+..++
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP  146 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--CcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence            456677777777777642  333446777777777777776644332  2 34556777777666553211223455666


Q ss_pred             CccEEEccCCc
Q 003893          148 RLKIFDAENNE  158 (788)
Q Consensus       148 ~L~~L~l~~n~  158 (788)
                      .++.|.++.|.
T Consensus       147 ~vtelHmS~N~  157 (418)
T KOG2982|consen  147 KVTELHMSDNS  157 (418)
T ss_pred             hhhhhhhccch
Confidence            77777777664

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.99  E-value=1.7e-06  Score=81.35  Aligned_cols=189  Identities=22%  Similarity=0.244  Sum_probs=117.8

Q ss_pred             ccCCCCCcEEEecCCCCCccCchHHhhcC---CCCCEEEccCCcccCc-----------CccCccCCCCcCEEEccCCcC
Q 003893          195 LYNQHDLEYVRLSHIKMNEEFPNWLLENN---TKLRQLSLVNDSLVGP-----------FRLPIHSHKQLRLLDVSKNNF  260 (788)
Q Consensus       195 l~~~~~L~~L~l~~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~-----------~~~~~~~~~~L~~L~l~~n~l  260 (788)
                      +..+..+..+++++|.+......++....   .+|+..+++.- +++.           ....+-.||.|+..++|+|.+
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            34467788889999888766666653333   45555555432 2221           123456789999999999988


Q ss_pred             cccCChhhhhc---CCCCcEEEeeCCcCCCCCCcc-------------ccCCCCCCEEEccCCcCCCccchHHh----hC
Q 003893          261 QGHIPLEIGDI---LSRLTVFNISMNALDGSIPSS-------------FGNMNFLQFLDLSNNQLTGEIPEHLA----MG  320 (788)
Q Consensus       261 ~~~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~-------------~~~l~~L~~L~L~~n~i~~~~~~~~~----~~  320 (788)
                      ....|+.+...   -..|++|.+++|.+.......             ..+-|.|+.....+|++. ..+....    ..
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~s  183 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLES  183 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHh
Confidence            76777665543   347889999998876322211             234478888888888887 5543322    22


Q ss_pred             CCCCcEEEccccccCcccc-----ccccCCCccCceeccCccCcccC----CccCCCCCCCcEEEcccCcCCCC
Q 003893          321 CVSLRSLALSNNNLEGHMF-----SRNFNLTNLIWLQLEGNHFVGEI----PQSLSKCSSLQGLFLSNNSLSGK  385 (788)
Q Consensus       321 l~~L~~L~l~~n~i~~~~~-----~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~l~~~  385 (788)
                      -.+|+++.+..|.|.-...     ..++.+.+|+.||+.+|.++...    ..++...+.|+.|.+..|-++..
T Consensus       184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~  257 (388)
T COG5238         184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNE  257 (388)
T ss_pred             hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccc
Confidence            2578888888887763321     12335677777888777766322    23344555667777766655543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.96  E-value=3e-06  Score=95.18  Aligned_cols=160  Identities=21%  Similarity=0.316  Sum_probs=106.7

Q ss_pred             CCCCEEeCCCCCCCCcccCCCCcc-CCCCCCCEEEcCCCCCCCC-ccHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCCC
Q 003893           46 PSIQYLSLSNSSVSNNSRTLDQGL-CPLVHLQELHMADNDLRGS-LPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTS  123 (788)
Q Consensus        46 ~~L~~L~L~~~~l~~~~~~l~~~l-~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~  123 (788)
                      .+|++||++|......  ..+..+ ..||.|+.|.+++-.+... ......++++|+.||+|+++++ .+.  .++++++
T Consensus       122 ~nL~~LdI~G~~~~s~--~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl~--GIS~Lkn  196 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSN--GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NLS--GISRLKN  196 (699)
T ss_pred             HhhhhcCccccchhhc--cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-CcH--HHhcccc
Confidence            5799999998653221  111233 3589999999998776533 3444578999999999999987 342  7899999


Q ss_pred             CCEEEcCCCcccCccCccccCCCCCccEEEccCCccchhhhccccCCCCcccccEEEccCCCcCCccCCccccCCCCCcE
Q 003893          124 IEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEY  203 (788)
Q Consensus       124 L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  203 (788)
                      |+.|.+.+-.+........+.++++|+.||+|........                      .......+.-..+++|+.
T Consensus       197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~----------------------~ii~qYlec~~~LpeLrf  254 (699)
T KOG3665|consen  197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT----------------------KIIEQYLECGMVLPELRF  254 (699)
T ss_pred             HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccch----------------------HHHHHHHHhcccCccccE
Confidence            9999998877664444457788999999999876532211                      000001111224667888


Q ss_pred             EEecCCCCCccCchHHhhcCCCCCEEEcc
Q 003893          204 VRLSHIKMNEEFPNWLLENNTKLRQLSLV  232 (788)
Q Consensus       204 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  232 (788)
                      ||.++..+.+.+...+...-|+|+.+..-
T Consensus       255 LDcSgTdi~~~~le~ll~sH~~L~~i~~~  283 (699)
T KOG3665|consen  255 LDCSGTDINEEILEELLNSHPNLQQIAAL  283 (699)
T ss_pred             EecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence            88888777766666665555666655443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.96  E-value=1.5e-05  Score=72.05  Aligned_cols=109  Identities=17%  Similarity=0.207  Sum_probs=82.7

Q ss_pred             CCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCCCC
Q 003893           45 MPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSI  124 (788)
Q Consensus        45 l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L  124 (788)
                      ......+||++|.+...     ..|..++.|.+|.|++|+|+.+.|..-..+++|..|.|.+|.|..-.....+..|++|
T Consensus        41 ~d~~d~iDLtdNdl~~l-----~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L  115 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKL-----DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL  115 (233)
T ss_pred             ccccceecccccchhhc-----ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence            45677899999987533     3577788899999999999987777666788899999999987633333357789999


Q ss_pred             CEEEcCCCcccCccCc--cccCCCCCccEEEccCCc
Q 003893          125 EDLILSDNHFQIPISL--EPLFNHSRLKIFDAENNE  158 (788)
Q Consensus       125 ~~L~l~~n~~~~~~~~--~~l~~l~~L~~L~l~~n~  158 (788)
                      ++|.+-+|+++.....  ..+..+++|+.||+..-.
T Consensus       116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            9999999987633222  245678999999987654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.88  E-value=1.2e-06  Score=73.55  Aligned_cols=103  Identities=21%  Similarity=0.290  Sum_probs=68.7

Q ss_pred             CCceEECCCCcccccCcccc---cccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEE
Q 003893          592 LLSGLDLSCNRLIGHIPPQI---GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVF  668 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  668 (788)
                      .+..++|+.|++. .+++..   .....|+..+|++|.+....+..-...+.++.|++++|.|+ .+|..+..++.|+.+
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            3556777777765 333333   33445666688888888544333334457888888888888 577778888888888


Q ss_pred             ecccCcCcccCCCCccccCCCCcCCcCCC
Q 003893          669 SVAYNNLSGKIPERAAQFATFNESSYEGN  697 (788)
Q Consensus       669 ~l~~N~l~~~~~~~~~~~~~l~~~~~~~N  697 (788)
                      +++.|++.. .|+.+.++.+|..++..+|
T Consensus       106 Nl~~N~l~~-~p~vi~~L~~l~~Lds~~n  133 (177)
T KOG4579|consen  106 NLRFNPLNA-EPRVIAPLIKLDMLDSPEN  133 (177)
T ss_pred             ccccCcccc-chHHHHHHHhHHHhcCCCC
Confidence            888888874 4444555666666655544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.85  E-value=4e-05  Score=79.06  Aligned_cols=54  Identities=13%  Similarity=0.108  Sum_probs=25.9

Q ss_pred             cccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCC
Q 003893          465 CLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNN  524 (788)
Q Consensus       465 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  524 (788)
                      +..++.|++++|.++ .+|.   -.++|+.|.+++|.-....|..+  .++|++|++++|
T Consensus        51 ~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            455556666665554 2331   12346666665543222344333  135566666655

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.83  E-value=1.2e-05  Score=54.69  Aligned_cols=36  Identities=42%  Similarity=0.736  Sum_probs=15.8

Q ss_pred             cCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccC
Q 003893          616 KIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS  652 (788)
Q Consensus       616 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  652 (788)
                      +|++|++++|+|+. +|..++++++|+.|++++|+|+
T Consensus         2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            34444555554442 2333444555555555555444

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.81  E-value=3e-05  Score=70.12  Aligned_cols=103  Identities=24%  Similarity=0.298  Sum_probs=64.6

Q ss_pred             EEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccc
Q 003893          252 LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN  331 (788)
Q Consensus       252 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~  331 (788)
                      ++++.+.++. .+ ...+....+...+||++|.+..  .+.|..++.|.+|.+.+|.|+ .+...+...+++|+.|.+.+
T Consensus        23 e~~LR~lkip-~i-enlg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   23 ELDLRGLKIP-VI-ENLGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             cccccccccc-ch-hhccccccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecC
Confidence            4555555443 11 1233335567778888887762  234677788888888888888 67666666677888888888


Q ss_pred             cccCccc-cccccCCCccCceeccCccCc
Q 003893          332 NNLEGHM-FSRNFNLTNLIWLQLEGNHFV  359 (788)
Q Consensus       332 n~i~~~~-~~~~~~l~~L~~L~l~~n~~~  359 (788)
                      |.+.... ...+..+|.|++|.+-+|.+.
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecCCchh
Confidence            8765432 123445566666666666554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.76  E-value=1.4e-05  Score=89.74  Aligned_cols=143  Identities=19%  Similarity=0.304  Sum_probs=101.8

Q ss_pred             CCccEEEcCCcccccCccchhHhhhcCCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcCCC
Q 003893           19 KSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTS   98 (788)
Q Consensus        19 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~   98 (788)
                      .+|++|+++|. -.+....+..++.-+|+|+.|.+++-.+...-  ......++++|+.||+|+++++..  ..++++++
T Consensus       122 ~nL~~LdI~G~-~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d--F~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lkn  196 (699)
T KOG3665|consen  122 QNLQHLDISGS-ELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD--FSQLCASFPNLRSLDISGTNISNL--SGISRLKN  196 (699)
T ss_pred             HhhhhcCcccc-chhhccHHHHHhhhCcccceEEecCceecchh--HHHHhhccCccceeecCCCCccCc--HHHhcccc
Confidence            57899999982 22556667778777999999999987654321  113456799999999999998865  67889999


Q ss_pred             CCEEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCcc-----CccccCCCCCccEEEccCCccchhhhcc
Q 003893           99 LRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPI-----SLEPLFNHSRLKIFDAENNEINAEIIES  166 (788)
Q Consensus        99 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-----~~~~l~~l~~L~~L~l~~n~~~~~~~~~  166 (788)
                      |+.|.+.+=.+...-....+.++++|+.||+|........     ....-..+++|+.||.++..+.....+.
T Consensus       197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~  269 (699)
T KOG3665|consen  197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEE  269 (699)
T ss_pred             HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHH
Confidence            9999888766653222235778999999999976533111     1122334889999999998887665554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.74  E-value=2.2e-05  Score=53.32  Aligned_cols=38  Identities=34%  Similarity=0.611  Sum_probs=32.4

Q ss_pred             CCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcc
Q 003893          639 RNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG  677 (788)
Q Consensus       639 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~  677 (788)
                      ++|++|++++|+|+ .+|..+.++++|+.|++++|+++.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            57999999999999 466679999999999999999984

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.62  E-value=9.7e-05  Score=65.26  Aligned_cols=104  Identities=21%  Similarity=0.243  Sum_probs=29.8

Q ss_pred             ccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCcccc
Q 003893          312 EIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLG  391 (788)
Q Consensus       312 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~  391 (788)
                      .++...|.++++|+.+.+..+ +..+....|.++++++.+.+.+ .+.......|..+++|+.+++..+ +.......|.
T Consensus        25 ~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~  101 (129)
T PF13306_consen   25 KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFS  101 (129)
T ss_dssp             EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTT
T ss_pred             EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhc
Confidence            333333333334444444332 3333333333333444444432 222222333444444444444332 2222223333


Q ss_pred             CCCCccEEEccCCeeccCchhhhhcccCC
Q 003893          392 NLTVLRHIIMPKNHIEGPIPLEFCQLRIL  420 (788)
Q Consensus       392 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  420 (788)
                      ++ .++.+.+.. .+..+....|.++++|
T Consensus       102 ~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen  102 NC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             T--T--EEE-TT-B-SS----GGG-----
T ss_pred             CC-CceEEEECC-CccEECCccccccccC
Confidence            43 444444443 2222333344444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.60  E-value=0.00011  Score=64.99  Aligned_cols=123  Identities=24%  Similarity=0.246  Sum_probs=50.1

Q ss_pred             hhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCC
Q 003893          267 EIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLT  346 (788)
Q Consensus       267 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~  346 (788)
                      ..+..+++|+.+.+.. .+.......|..+++|+.+.+..+ +. .++...+.++++++.+.+.+ .+.......|..++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccc
Confidence            3333344555555543 334344445566656666666553 44 55555555555666666644 33334444555566


Q ss_pred             ccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCc
Q 003893          347 NLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVL  396 (788)
Q Consensus       347 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  396 (788)
                      +|+.+.+..+ +.......|.++ .|+.+.+.. .+.......|.++++|
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            6666666544 333444556665 666666654 3333444555555554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.35  E-value=0.0011  Score=68.78  Aligned_cols=135  Identities=17%  Similarity=0.192  Sum_probs=63.8

Q ss_pred             cCCCCCEEEccCCcccCcCccCccCCCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCC-cCCCCCCccccCCCCCC
Q 003893          222 NNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMN-ALDGSIPSSFGNMNFLQ  300 (788)
Q Consensus       222 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~  300 (788)
                      .+.++++|++++|.++...    .-.++|++|.+++|.--..+|..+   .++|++|++++| .+. .+|      ++|+
T Consensus        50 ~~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP------~sLe  115 (426)
T PRK15386         50 EARASGRLYIKDCDIESLP----VLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLP------ESVR  115 (426)
T ss_pred             HhcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-ccc------cccc
Confidence            4566666666666555432    122357777776643222455433   246777777776 333 333      2456


Q ss_pred             EEEccCCcCCCccchHHhhCCCCCcEEEccccc-cCcc-ccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcc
Q 003893          301 FLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN-LEGH-MFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLS  378 (788)
Q Consensus       301 ~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~-i~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  378 (788)
                      .|+++.+... .++. +   .++|+.|.+.+++ .... .+..  -.++|++|++++|... ..|..+.  .+|+.|+++
T Consensus       116 ~L~L~~n~~~-~L~~-L---PssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls  185 (426)
T PRK15386        116 SLEIKGSATD-SIKN-V---PNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH  185 (426)
T ss_pred             eEEeCCCCCc-cccc-C---cchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence            6666555432 2211 0   1245556654322 1000 0000  1245666666666544 2333333  356666665


Q ss_pred             cC
Q 003893          379 NN  380 (788)
Q Consensus       379 ~n  380 (788)
                      .+
T Consensus       186 ~n  187 (426)
T PRK15386        186 IE  187 (426)
T ss_pred             cc
Confidence            44

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.22  E-value=8.6e-05  Score=70.39  Aligned_cols=104  Identities=21%  Similarity=0.301  Sum_probs=60.0

Q ss_pred             CCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCC--CCCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCC
Q 003893           45 MPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADN--DLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLT  122 (788)
Q Consensus        45 l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~  122 (788)
                      +..|+.|++.++.++..     ..+-.+++|++|.++.|  ++.+.++-...++++|++|++++|++...-....+..+.
T Consensus        42 ~~~le~ls~~n~gltt~-----~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~  116 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL-----TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE  116 (260)
T ss_pred             ccchhhhhhhccceeec-----ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence            56677777777665433     23555677777777777  555555444556677777777777765211111355666


Q ss_pred             CCCEEEcCCCcccCccCc--cccCCCCCccEEE
Q 003893          123 SIEDLILSDNHFQIPISL--EPLFNHSRLKIFD  153 (788)
Q Consensus       123 ~L~~L~l~~n~~~~~~~~--~~l~~l~~L~~L~  153 (788)
                      +|..|++.+|..+.....  ..+.-+++|++|+
T Consensus       117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             chhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            777777777765421111  1233455666555

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.05  E-value=8.3e-05  Score=82.81  Aligned_cols=112  Identities=28%  Similarity=0.229  Sum_probs=51.8

Q ss_pred             cCCCCCEEEccCCcccCc--CccCccCCCCcCEEEccCC-cCcccCC---hhhhhcCCCCcEEEeeCCc-CCCCCCcccc
Q 003893          222 NNTKLRQLSLVNDSLVGP--FRLPIHSHKQLRLLDVSKN-NFQGHIP---LEIGDILSRLTVFNISMNA-LDGSIPSSFG  294 (788)
Q Consensus       222 ~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~n-~l~~~~~---~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~  294 (788)
                      .++.|+.+.+.++.-...  .......++.|+.|+++++ ......+   ......+++|+.|+++++. ++...-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            345555555554432221  1222334555555555542 1110111   1223334566666666665 3333222222


Q ss_pred             -CCCCCCEEEccCCc-CCCccchHHhhCCCCCcEEEccccc
Q 003893          295 -NMNFLQFLDLSNNQ-LTGEIPEHLAMGCVSLRSLALSNNN  333 (788)
Q Consensus       295 -~l~~L~~L~L~~n~-i~~~~~~~~~~~l~~L~~L~l~~n~  333 (788)
                       .+++|+.|.+.++. +++..-..+...++.|++|+++.+.
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence             25666666655555 4444444444556666666666554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.89  E-value=0.00054  Score=65.11  Aligned_cols=90  Identities=22%  Similarity=0.238  Sum_probs=70.2

Q ss_pred             ccCCCCCCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCC--cCcCCCChhhhcCCCCCCEEEcCCCcccCccCccccCC
Q 003893           68 GLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSN--QLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFN  145 (788)
Q Consensus        68 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~  145 (788)
                      ....+..|+.|.+.++.++..  ..|..+++|++|++|.|  .+.+.++. -...+++|+++++++|++...-.+..+..
T Consensus        38 l~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~  114 (260)
T KOG2739|consen   38 LTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKE  114 (260)
T ss_pred             ccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhh
Confidence            345577788888888887754  34678999999999999  66655555 45667999999999999875555567788


Q ss_pred             CCCccEEEccCCccc
Q 003893          146 HSRLKIFDAENNEIN  160 (788)
Q Consensus       146 l~~L~~L~l~~n~~~  160 (788)
                      +++|..|++..|..+
T Consensus       115 l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  115 LENLKSLDLFNCSVT  129 (260)
T ss_pred             hcchhhhhcccCCcc
Confidence            889999999888754

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.84  E-value=0.00024  Score=79.05  Aligned_cols=38  Identities=24%  Similarity=0.230  Sum_probs=18.9

Q ss_pred             CCCCcEEEecCCCCCc--cCchHHhhcCCCCCEEEccCCc
Q 003893          198 QHDLEYVRLSHIKMNE--EFPNWLLENNTKLRQLSLVNDS  235 (788)
Q Consensus       198 ~~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~  235 (788)
                      +..++.+.+..+....  .........+++++.+.+..+.
T Consensus       334 c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  334 CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG  373 (482)
T ss_pred             CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence            3344444444433221  2333334566777777666665

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.42  E-value=0.00011  Score=69.67  Aligned_cols=102  Identities=20%  Similarity=0.149  Sum_probs=64.6

Q ss_pred             CCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCCCC
Q 003893           45 MPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSI  124 (788)
Q Consensus        45 l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L  124 (788)
                      +.+.+.|+.-||.+.++     .-..+++.|++|.|+-|+|+...|  +..|++|+.|.|..|.|.+.-...-+.++++|
T Consensus        18 l~~vkKLNcwg~~L~DI-----sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsL   90 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI-----SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSL   90 (388)
T ss_pred             HHHhhhhcccCCCccHH-----HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence            44567777777777554     235567777888888887775533  67778888888887776632222235667777


Q ss_pred             CEEEcCCCcccCccCc----cccCCCCCccEEE
Q 003893          125 EDLILSDNHFQIPISL----EPLFNHSRLKIFD  153 (788)
Q Consensus       125 ~~L~l~~n~~~~~~~~----~~l~~l~~L~~L~  153 (788)
                      +.|-|..|.-.+..+.    ..+.-+++|++||
T Consensus        91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            7777777765433221    1344567777765

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.05  E-value=0.00057  Score=65.05  Aligned_cols=61  Identities=25%  Similarity=0.269  Sum_probs=27.8

Q ss_pred             hcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHH-hhCCCCCcEEEccccc
Q 003893          270 DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHL-AMGCVSLRSLALSNNN  333 (788)
Q Consensus       270 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~l~~L~~L~l~~n~  333 (788)
                      ..++.|++|.|+-|+|+..-  .+..|++|++|.|..|.|. .+.+.. ..++|+|+.|.|..|.
T Consensus        38 ~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   38 EKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENP   99 (388)
T ss_pred             HhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCC
Confidence            33455555555555554322  2445555555555555554 332221 2234444444444443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.70  E-value=0.013  Score=32.94  Aligned_cols=12  Identities=58%  Similarity=0.708  Sum_probs=5.8

Q ss_pred             CCeeeCCCcccC
Q 003893          641 IESLDLSYNKLS  652 (788)
Q Consensus       641 L~~L~Ls~N~l~  652 (788)
                      |++||+++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            444445555444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.09  E-value=0.013  Score=32.84  Aligned_cols=19  Identities=58%  Similarity=0.889  Sum_probs=9.0

Q ss_pred             CCeEeCCCCCCCCCCCcccC
Q 003893          617 IQTLNLSHNNLAGPIPSTFS  636 (788)
Q Consensus       617 L~~L~Ls~N~l~~~~~~~~~  636 (788)
                      |++|||++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 3333343

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.19  E-value=0.0011  Score=71.56  Aligned_cols=67  Identities=31%  Similarity=0.207  Sum_probs=35.3

Q ss_pred             cccccccccEEeCCCCccCCCCCcc----ccCC-cCCcEEEccCccCccc----CcccccCCCCCCEEEccCCcCC
Q 003893          461 TFFNCLTLMILDLSYNHLNGNIPDR----VDGL-SQLSYLILAHNNLEGE----VPIQLCRLNQLQLLDLSNNNLH  527 (788)
Q Consensus       461 ~~~~~~~L~~L~l~~n~i~~~~~~~----~~~l-~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~  527 (788)
                      .+...+.|+.|++++|.+.+.....    +... ..+++|++..|.++..    +...+.....++.++++.|.+.
T Consensus       110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~  185 (478)
T KOG4308|consen  110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLI  185 (478)
T ss_pred             HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccc
Confidence            3444556666666666665321111    1111 3455566666666533    2334445666777777777664

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.16  E-value=0.0047  Score=57.42  Aligned_cols=80  Identities=23%  Similarity=0.251  Sum_probs=37.7

Q ss_pred             CceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEeccc
Q 003893          593 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAY  672 (788)
Q Consensus       593 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~  672 (788)
                      .+.||++.|++. .....|+-++.|..|+++.|.+. ..|..++.+..+..+++..|..+ ..|.++...+.++++++-+
T Consensus        44 ~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~  120 (326)
T KOG0473|consen   44 VTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKK  120 (326)
T ss_pred             eeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhcc
Confidence            344555555444 22233444444555555555544 34444444444555555544444 3444445555555555555


Q ss_pred             CcC
Q 003893          673 NNL  675 (788)
Q Consensus       673 N~l  675 (788)
                      |++
T Consensus       121 ~~~  123 (326)
T KOG0473|consen  121 TEF  123 (326)
T ss_pred             Ccc
Confidence            443

>TIGR00864 PCC polycystin cation channel protein

Probab=91.93  E-value=0.08  Score=67.00  Aligned_cols=36  Identities=28%  Similarity=0.444  Sum_probs=20.0

Q ss_pred             cccCcCcccCCCCccccCCCCcCCcCCCCCCCCCCC
Q 003893          670 VAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL  705 (788)
Q Consensus       670 l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~  705 (788)
                      |++|+|+...+..|..+.++..+++++|||.|+|.+
T Consensus         2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L   37 (2740)
T TIGR00864         2 ISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL   37 (2740)
T ss_pred             CCCCcCCccChHHhccCCCceEEEeeCCcccccccc
Confidence            445555544444444455555555566666666665

Note: this model has been restricted to the amino half because for technical reasons.

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=90.70  E-value=2.1  Score=44.93  Aligned_cols=108  Identities=19%  Similarity=0.120  Sum_probs=62.3

Q ss_pred             CCCCCEEeCCCCCCCCccc-CCCCccCCCCCCCEEEcCCCCCCCCccHhh---hcCCCCCEEeCCCCcCcCCCChhhhcC
Q 003893           45 MPSIQYLSLSNSSVSNNSR-TLDQGLCPLVHLQELHMADNDLRGSLPWCL---ANMTSLRILDVSSNQLIGSISSSPLIH  120 (788)
Q Consensus        45 l~~L~~L~L~~~~l~~~~~-~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~l~~  120 (788)
                      -+.++++|++.+.+....+ ++++....      +.++.|..++.....+   ..-..++++|++.|...+.+|. .+..
T Consensus       164 npr~r~~dls~npi~dkvpihl~~p~~p------l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~-~~n~  236 (553)
T KOG4242|consen  164 NPRARQHDLSPNPIGDKVPIHLPQPGNP------LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPR-TLNK  236 (553)
T ss_pred             cchhhhhccCCCcccccCCccccCCCCc------cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchh-HHHH
Confidence            4568888999887755432 23233222      6777777664322221   1223588899999887777775 3322


Q ss_pred             ---CCCCCEEEcCCCcccCccCcc--ccCCCCCccEEEccCCcc
Q 003893          121 ---LTSIEDLILSDNHFQIPISLE--PLFNHSRLKIFDAENNEI  159 (788)
Q Consensus       121 ---l~~L~~L~l~~n~~~~~~~~~--~l~~l~~L~~L~l~~n~~  159 (788)
                         -.-++.++.+...++.+....  ..+..++|...+++.|..
T Consensus       237 ~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~  280 (553)
T KOG4242|consen  237 KAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT  280 (553)
T ss_pred             hhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence               234777777776654222211  233456777777766654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.56  E-value=0.21  Score=29.32  Aligned_cols=14  Identities=36%  Similarity=0.681  Sum_probs=6.6

Q ss_pred             cCCeEeCCCCCCCC
Q 003893          616 KIQTLNLSHNNLAG  629 (788)
Q Consensus       616 ~L~~L~Ls~N~l~~  629 (788)
                      +|+.|+|++|+|+.
T Consensus         3 ~L~~L~L~~N~l~~   16 (26)
T smart00369        3 NLRELDLSNNQLSS   16 (26)
T ss_pred             CCCEEECCCCcCCc
Confidence            44444444444443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.56  E-value=0.21  Score=29.32  Aligned_cols=14  Identities=36%  Similarity=0.681  Sum_probs=6.6

Q ss_pred             cCCeEeCCCCCCCC
Q 003893          616 KIQTLNLSHNNLAG  629 (788)
Q Consensus       616 ~L~~L~Ls~N~l~~  629 (788)
                      +|+.|+|++|+|+.
T Consensus         3 ~L~~L~L~~N~l~~   16 (26)
T smart00370        3 NLRELDLSNNQLSS   16 (26)
T ss_pred             CCCEEECCCCcCCc
Confidence            44444444444443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=89.76  E-value=0.25  Score=25.61  Aligned_cols=11  Identities=73%  Similarity=0.948  Sum_probs=3.5

Q ss_pred             CCEEEccCCcC
Q 003893          299 LQFLDLSNNQL  309 (788)
Q Consensus       299 L~~L~L~~n~i  309 (788)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            44444444443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.48  E-value=0.47  Score=27.78  Aligned_cols=21  Identities=48%  Similarity=0.532  Sum_probs=14.1

Q ss_pred             CCCCEEEccCCcCCCccchHHh
Q 003893          297 NFLQFLDLSNNQLTGEIPEHLA  318 (788)
Q Consensus       297 ~~L~~L~L~~n~i~~~~~~~~~  318 (788)
                      ++|++|++++|+++ .+|...|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            56677777777776 6666655

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.48  E-value=0.47  Score=27.78  Aligned_cols=21  Identities=48%  Similarity=0.532  Sum_probs=14.1

Q ss_pred             CCCCEEEccCCcCCCccchHHh
Q 003893          297 NFLQFLDLSNNQLTGEIPEHLA  318 (788)
Q Consensus       297 ~~L~~L~L~~n~i~~~~~~~~~  318 (788)
                      ++|++|++++|+++ .+|...|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            56677777777776 6666655

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.96  E-value=0.2  Score=46.16  Aligned_cols=80  Identities=24%  Similarity=0.214  Sum_probs=35.0

Q ss_pred             CCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCC-CCCccHhhh-cCCCCCEEeCCCCc-CcCCCChhhhcCCCCC
Q 003893           48 IQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDL-RGSLPWCLA-NMTSLRILDVSSNQ-LIGSISSSPLIHLTSI  124 (788)
Q Consensus        48 L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i-~~~~~~~~~-~l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L  124 (788)
                      ++.+|-+++.|....-   +-+..++.++.|.+.+|.- .+..-+.++ -.++|+.|++++|. |+ .-....+..+++|
T Consensus       103 IeaVDAsds~I~~eGl---e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~L~~lknL  178 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGL---EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLACLLKLKNL  178 (221)
T ss_pred             EEEEecCCchHHHHHH---HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec-hhHHHHHHHhhhh
Confidence            4455555555433322   2344455555555555532 111111111 23556666666553 22 2222244555555


Q ss_pred             CEEEcCC
Q 003893          125 EDLILSD  131 (788)
Q Consensus       125 ~~L~l~~  131 (788)
                      +.|.+.+
T Consensus       179 r~L~l~~  185 (221)
T KOG3864|consen  179 RRLHLYD  185 (221)
T ss_pred             HHHHhcC
Confidence            5555544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.41  E-value=0.099  Score=48.05  Aligned_cols=85  Identities=16%  Similarity=0.122  Sum_probs=61.4

Q ss_pred             CCCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhhc-CCCCCCEEEcCCCcccCccCccccCCCCCccE
Q 003893           73 VHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLI-HLTSIEDLILSDNHFQIPISLEPLFNHSRLKI  151 (788)
Q Consensus        73 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~  151 (788)
                      ..++.+|-+++.|..+.-+.+..++.++.|.+.+|.-.+.-....++ -.++|+.|++++|.-..+.....+.++++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            45789999999998888888889999999999888533221111222 26789999999987333445556777888888


Q ss_pred             EEccCC
Q 003893          152 FDAENN  157 (788)
Q Consensus       152 L~l~~n  157 (788)
                      |.+.+-
T Consensus       181 L~l~~l  186 (221)
T KOG3864|consen  181 LHLYDL  186 (221)
T ss_pred             HHhcCc
Confidence            887654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.01  E-value=0.024  Score=52.87  Aligned_cols=89  Identities=22%  Similarity=0.314  Sum_probs=61.2

Q ss_pred             ccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCC
Q 003893          609 PQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFAT  688 (788)
Q Consensus       609 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~  688 (788)
                      ..+......+.||++.|++.. ....|+-++.|..||++.|++. ..|.++.....+..+++.+|..+ ..|..+.+.+.
T Consensus        36 ~ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~  112 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH  112 (326)
T ss_pred             hhhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence            345556677777887777763 3445666777777788877776 56777777777777777777766 45555677777


Q ss_pred             CCcCCcCCCCCC
Q 003893          689 FNESSYEGNPFL  700 (788)
Q Consensus       689 l~~~~~~~Np~~  700 (788)
                      ....+..+||+.
T Consensus       113 ~k~~e~k~~~~~  124 (326)
T KOG0473|consen  113 PKKNEQKKTEFF  124 (326)
T ss_pred             cchhhhccCcch
Confidence            777777777654

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=86.64  E-value=0.15  Score=29.20  Aligned_cols=15  Identities=20%  Similarity=0.510  Sum_probs=6.1

Q ss_pred             CCCCEEEcCCCCCCC
Q 003893           73 VHLQELHMADNDLRG   87 (788)
Q Consensus        73 ~~L~~L~L~~n~i~~   87 (788)
                      ++|++|+|++|++++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            344455555554443

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=86.17  E-value=0.0075  Score=65.23  Aligned_cols=138  Identities=27%  Similarity=0.301  Sum_probs=65.8

Q ss_pred             ccEEEcCCcccccCcc----chhHhhhcCCCCCEEeCCCCCCCCccc-CCCCccCCC-CCCCEEEcCCCCCCCC----cc
Q 003893           21 LKELYMDDARIALNTS----FLQIIGESMPSIQYLSLSNSSVSNNSR-TLDQGLCPL-VHLQELHMADNDLRGS----LP   90 (788)
Q Consensus        21 L~~L~L~~~~~~~~~~----~~~~~~~~l~~L~~L~L~~~~l~~~~~-~l~~~l~~l-~~L~~L~L~~n~i~~~----~~   90 (788)
                      +..|.|.+  |.+...    ...++.. ..+|..|++++|.+.+... .+-+.+... ..|++|++..|.+++.    +.
T Consensus        89 l~~L~L~~--~~l~~~~~~~l~~~l~t-~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~  165 (478)
T KOG4308|consen   89 LLHLSLAN--NRLGDRGAEELAQALKT-LPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLA  165 (478)
T ss_pred             HHHhhhhh--CccccchHHHHHHHhcc-cccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHH
Confidence            56666666  443322    2233333 5566667777766653211 111122222 3456666666666554    33


Q ss_pred             HhhhcCCCCCEEeCCCCcCcCC----CChhhhc----CCCCCCEEEcCCCcccCccC---ccccCCCCC-ccEEEccCCc
Q 003893           91 WCLANMTSLRILDVSSNQLIGS----ISSSPLI----HLTSIEDLILSDNHFQIPIS---LEPLFNHSR-LKIFDAENNE  158 (788)
Q Consensus        91 ~~~~~l~~L~~L~Ls~n~l~~~----~~~~~l~----~l~~L~~L~l~~n~~~~~~~---~~~l~~l~~-L~~L~l~~n~  158 (788)
                      ..+.....++.+|++.|.+...    ++. .+.    ...++++|++.+|.++....   ...+...+. +..+++..|.
T Consensus       166 ~~L~~~~~l~~l~l~~n~l~~~g~~~l~~-~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~  244 (478)
T KOG4308|consen  166 AVLEKNEHLTELDLSLNGLIELGLLVLSQ-ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK  244 (478)
T ss_pred             HHHhcccchhHHHHHhcccchhhhHHHhh-hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence            4444566666666666654200    000 112    34556666776665541100   012233333 5556666666


Q ss_pred             cchh
Q 003893          159 INAE  162 (788)
Q Consensus       159 ~~~~  162 (788)
                      +.+.
T Consensus       245 l~d~  248 (478)
T KOG4308|consen  245 LGDV  248 (478)
T ss_pred             cchH
Confidence            6544

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=85.94  E-value=0.21  Score=28.63  Aligned_cols=16  Identities=44%  Similarity=0.624  Sum_probs=8.2

Q ss_pred             CCCCeeeCCCcccCcc
Q 003893          639 RNIESLDLSYNKLSWK  654 (788)
Q Consensus       639 ~~L~~L~Ls~N~l~~~  654 (788)
                      ++|++|+|++|+|+..
T Consensus         2 ~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    2 PNLETLDLSNNQITDE   17 (24)
T ss_dssp             TT-SEEE-TSSBEHHH
T ss_pred             CCCCEEEccCCcCCHH
Confidence            4566666666666543

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	788
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-47
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		7e-47
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-13
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-05

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  186 bits (471), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 169/559 (30%), Positives = 253/559 (45%), Gaps = 72/559 (12%)
Query: 194 FLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLL 253
           FL +   L+++ +S  K++ +F +  +   T+L+ L++ ++  VGP  +P    K L+ L
Sbjct: 218 FLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKSLQYL 274
Query: 254 DVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFG------------------- 294
            +++N F G IP  +      LT  ++S N   G++P  FG                   
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 295 ------NMNFLQFLDLSNNQLTGEIPEHLAMGCVXXXXXXXXXXXXEGHMF---SRNFNL 345
                  M  L+ LDLS N+ +GE+PE L                  G +     +N   
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 346 TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNH 405
           T L  L L+ N F G+IP +LS CS L  L LS N LSG IP  LG+L+ LR + +  N 
Sbjct: 395 T-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 406 IEGPIPLEFCQLRILQILDISDNNISGSLPSCY-DFVCIEQVHLSKNMLHGQLKE--GTF 462
           +EG IP E   ++ L+ L +  N+++G +PS   +   +  + LS N L G++ +  G  
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 463 FNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXX 522
            N   L IL LS N  +GNIP  +     L +L L  N   G +P               
Sbjct: 514 EN---LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 570
Query: 523 XXXXHGHIPSCFDNTTLH-------------ERYNNGSSLQPFETSFVIMGGMDVDPKKQ 569
               + +I +       H             E+ N  S+  P   +  + GG        
Sbjct: 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH------- 623
Query: 570 ILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAG 629
                     S T+   G     +  LD+S N L G+IP +IG++  +  LNL HN+++G
Sbjct: 624 ---------TSPTFDNNGS----MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670
Query: 630 PIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATF 689
            IP    +LR +  LDLS NKL  +IP  +  L  L    ++ NNLSG IPE   QF TF
Sbjct: 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETF 729
Query: 690 NESSYEGNPFLCGPPLPIC 708
             + +  NP LCG PLP C
Sbjct: 730 PPAKFLNNPGLCGYPLPRC 748

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  185 bits (470), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 169/559 (30%), Positives = 253/559 (45%), Gaps = 72/559 (12%)
Query: 194 FLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLL 253
           FL +   L+++ +S  K++ +F +  +   T+L+ L++ ++  VGP  +P    K L+ L
Sbjct: 215 FLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKSLQYL 271
Query: 254 DVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFG------------------- 294
            +++N F G IP  +      LT  ++S N   G++P  FG                   
Sbjct: 272 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 331
Query: 295 ------NMNFLQFLDLSNNQLTGEIPEHLAMGCVXXXXXXXXXXXXEGHMF---SRNFNL 345
                  M  L+ LDLS N+ +GE+PE L                  G +     +N   
Sbjct: 332 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 391
Query: 346 TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNH 405
           T L  L L+ N F G+IP +LS CS L  L LS N LSG IP  LG+L+ LR + +  N 
Sbjct: 392 T-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 406 IEGPIPLEFCQLRILQILDISDNNISGSLPSCY-DFVCIEQVHLSKNMLHGQLKE--GTF 462
           +EG IP E   ++ L+ L +  N+++G +PS   +   +  + LS N L G++ +  G  
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 463 FNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXX 522
            N   L IL LS N  +GNIP  +     L +L L  N   G +P               
Sbjct: 511 EN---LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 567
Query: 523 XXXXHGHIPSCFDNTTLH-------------ERYNNGSSLQPFETSFVIMGGMDVDPKKQ 569
               + +I +       H             E+ N  S+  P   +  + GG        
Sbjct: 568 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH------- 620
Query: 570 ILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAG 629
                     S T+   G     +  LD+S N L G+IP +IG++  +  LNL HN+++G
Sbjct: 621 ---------TSPTFDNNGS----MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 667
Query: 630 PIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATF 689
            IP    +LR +  LDLS NKL  +IP  +  L  L    ++ NNLSG IPE   QF TF
Sbjct: 668 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETF 726
Query: 690 NESSYEGNPFLCGPPLPIC 708
             + +  NP LCG PLP C
Sbjct: 727 PPAKFLNNPGLCGYPLPRC 745

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 104/257 (40%), Gaps = 55/257 (21%)
Query: 476 NHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGHIPSCFD 535
           N+L G IP  +  L+QL YL + H N+ G +P                            
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL------------------- 127
Query: 536 NTTLHERYNN-GSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS 594
             TL   YN    +L P  +S   + G+  D  +         + +I  +Y G    L +
Sbjct: 128 -VTLDFSYNALSGTLPPSISSLPNLVGITFDGNR--------ISGAIPDSY-GSFSKLFT 177
Query: 595 GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSN----------------- 637
            + +S NRL G IPP   NL  +  ++LS N L G     F +                 
Sbjct: 178 SMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236
Query: 638 ------LRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNE 691
                  +N+  LDL  N++   +P  L +L  L   +V++NNL G+IP+       F+ 
Sbjct: 237 LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDV 295
Query: 692 SSYEGNPFLCGPPLPIC 708
           S+Y  N  LCG PLP C
Sbjct: 296 SAYANNKCLCGSPLPAC 312

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 607 IPPQIGNLTKIQTLNLSH-NNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTL 665
           IP  + NL  +  L +   NNL GPIP   + L  +  L +++  +S  IP  L ++ TL
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 666 AVFSVAYNNLSGKIPERAAQFATFNESSYEGN 697
                +YN LSG +P   +        +++GN
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	788
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-158
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-113
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-77
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-55
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-68
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-61
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-55
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-54
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-47
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-63
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-56
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-52
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-50
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-32
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-62
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-57
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-57
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-62
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-46
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-45
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-43
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-42
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-59
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-54
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-51
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-50
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-48
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-47
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-43
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-22
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-40
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-36
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-38
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-28
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-25
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-24
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-21
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	5e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	9e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  477 bits (1229), Expect = e-158
 Identities = 200/707 (28%), Positives = 306/707 (43%), Gaps = 63/707 (8%)

Query: 44  SMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPW-CLANMTSLRIL 102
              S+  L LS +S+S    TL   L     L+ L+++ N L           + SL +L
Sbjct: 98  CSASLTSLDLSRNSLSGPVTTLTS-LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156

Query: 103 DVSSNQLIGSISSSPLI--HLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEIN 160
           D+S+N + G+     ++      ++ L +S N     +    +     L+  D  +N  +
Sbjct: 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV---DVSRCVNLEFLDVSSNNFS 213

Query: 161 AEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLL 220
             I      +     LQ L +S     G  F + +    +L+ + +S  +     P   L
Sbjct: 214 TGIPFLGDCS----ALQHLDISGNKLSG-DFSRAISTCTELKLLNISSNQFVGPIPPLPL 268

Query: 221 ENNTKLRQLSLVNDSLVGPFRLPI-HSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFN 279
                L+ LSL  +   G     +  +   L  LD+S N+F G +P   G   S L    
Sbjct: 269 ---KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS-CSLLESLA 324

Query: 280 ISMNALDGSIP-SSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHM 338
           +S N   G +P  +   M  L+ LDLS N+ +GE+PE L     SL +L LS+NN  G +
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384

Query: 339 FSR--NFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVL 396
                      L  L L+ N F G+IP +LS CS L  L LS N LSG IP  LG+L+ L
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444

Query: 397 RHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQ 456
           R + +  N +EG IP E   ++ L+ L +  N+++G +PS                    
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG------------------- 485

Query: 457 LKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQL 516
                  NC  L  + LS N L G IP  +  L  L+ L L++N+  G +P +L     L
Sbjct: 486 -----LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540

Query: 517 QLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFE------TSFVIMGGMDVDPKKQI 570
             LDL+ N  +G IP+     +     N  +  +                G  ++ +   
Sbjct: 541 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600

Query: 571 LESFDFTTKSITY-----TYQGRVP------SLLSGLDLSCNRLIGHIPPQIGNLTKIQT 619
            E  +  +           Y G           +  LD+S N L G+IP +IG++  +  
Sbjct: 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI 660

Query: 620 LNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKI 679
           LNL HN+++G IP    +LR +  LDLS NKL  +IP  +  L  L    ++ NNLSG I
Sbjct: 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720

Query: 680 PERAAQFATFNESSYEGNPFLCGPPLPICISPTTMPEASPSNEGDNN 726
           PE   QF TF  + +  NP LCG PLP C  P+     +      ++
Sbjct: 721 PEM-GQFETFPPAKFLNNPGLCGYPLPRC-DPSNADGYAHHQRSHHH 765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  360 bits (927), Expect = e-113
 Identities = 165/667 (24%), Positives = 262/667 (39%), Gaps = 123/667 (18%)

Query: 51  LSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLI 110
           + LS+  ++     +   L  L  L+ L ++++ + GS+        SL  LD+S N L 
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLS 113

Query: 111 GSISSSPLI-HLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSL 169
           G +++   +   + ++ L +S N    P  +      + L++ D   N I+   +     
Sbjct: 114 GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW-- 171

Query: 170 TTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQL 229
                                                            L +   +L+ L
Sbjct: 172 ------------------------------------------------VLSDGCGELKHL 183

Query: 230 SLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSI 289
           ++  + + G   + +     L  LDVS NNF   IP  +GD  S L   +IS N L G  
Sbjct: 184 AISGNKISGD--VDVSRCVNLEFLDVSSNNFSTGIP-FLGD-CSALQHLDISGNKLSGDF 239

Query: 290 PSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHM-FSRNFNLTNL 348
             +      L+ L++S+NQ  G IP        SL+ L+L+ N   G +    +     L
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIPPLP---LKSLQYLSLAENKFTGEIPDFLSGACDTL 296

Query: 349 IWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPR-WLGNLTVLRHIIMPKNHIE 407
             L L GNHF G +P     CS L+ L LS+N+ SG++P   L  +  L+ + +  N   
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356

Query: 408 GPIPLEFCQLRI-LQILDISDNNISGSLPS---CYDFVCIEQVHLSKNMLHGQLKEGTFF 463
           G +P     L   L  LD+S NN SG +           +++++L  N   G++   T  
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TLS 415

Query: 464 NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSN 523
           NC  L+ L LS+N+L+G IP  +  LS+L  L L  N LEGE+P +L  +  L+ L L  
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475

Query: 524 NNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITY 583
           N+L G IPS   N T                                L            
Sbjct: 476 NDLTGEIPSGLSNCTN-------------------------------LNWIS-------- 496

Query: 584 TYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIES 643
                         LS NRL G IP  IG L  +  L LS+N+ +G IP+   + R++  
Sbjct: 497 --------------LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542

Query: 644 LDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGP 703
           LDL+ N  +  IP  + + +      +A N ++GK            E    GN      
Sbjct: 543 LDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598

Query: 704 PLPICIS 710
                ++
Sbjct: 599 IRSEQLN 605

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  316 bits (811), Expect = 2e-96
 Identities = 125/477 (26%), Positives = 216/477 (45%), Gaps = 57/477 (11%)

Query: 222 NNTKLRQLSLVNDSL---VGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVF 278
            + K+  + L +  L          + S   L  L +S ++  G +        + LT  
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKC-SASLTSL 105

Query: 279 NISMNALDGSIPS--SFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG 336
           ++S N+L G + +  S G+ + L+FL++S+N L         +   SL  L LS N++ G
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165

Query: 337 HM---FSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNL 393
                +  +     L  L + GN   G++   +S+C +L+ L +S+N+ S  IP +LG+ 
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDC 222

Query: 394 TVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNML 453
           + L+H+ +  N + G           L++L+IS N   G +P       ++ + L++N  
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKF 281

Query: 454 HGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQ-LCR 512
            G++ +     C TL  LDLS NH  G +P      S L  L L+ NN  GE+P+  L +
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341

Query: 513 LNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILE 572
           +  L++LDLS N   G +P    N +                                L 
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSAS------------------------------LL 371

Query: 573 SFDFTTKSITYTYQGRVP--------SLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSH 624
           + D ++ + +    G +         + L  L L  N   G IPP + N +++ +L+LS 
Sbjct: 372 TLDLSSNNFS----GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427

Query: 625 NNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE 681
           N L+G IPS+  +L  +  L L  N L  +IP +L+ + TL    + +N+L+G+IP 
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.7 bits (200), Expect = 7e-16
 Identities = 37/183 (20%), Positives = 66/183 (36%), Gaps = 47/183 (25%)

Query: 511 CRLNQLQLLDLSNNNLH---GHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMD 563
           CR +++  +DLS+  L+     + S   +     +L    ++ +                
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCS------- 99

Query: 564 VDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPP--QIGNLTKIQTLN 621
                                      + L+ LDLS N L G +     +G+ + ++ LN
Sbjct: 100 ---------------------------ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLN 132

Query: 622 LSHNNLAGPIP-STFSNLRNIESLDLSYNKLSWKIPYQLVE---LNTLAVFSVAYNNLSG 677
           +S N L  P   S    L ++E LDLS N +S       V       L   +++ N +SG
Sbjct: 133 VSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG 192

Query: 678 KIP 680
            + 
Sbjct: 193 DVD 195

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  263 bits (673), Expect = 2e-77
 Identities = 122/686 (17%), Positives = 219/686 (31%), Gaps = 106/686 (15%)

Query: 18  FKSLKELYMDDARIA--LNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHL 75
             ++  L +   ++      +F          +  L +  +++S       +    L  L
Sbjct: 24  PTNITVLNLTHNQLRRLPAANF-----TRYSQLTSLDVGFNTISKLE---PELCQKLPML 75

Query: 76  QELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ 135
           + L++  N+L        A  T+L  L + SN  I  I ++P +   ++  L LS N   
Sbjct: 76  KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLS 134

Query: 136 IPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFL 195
               L        L+     NN+I   +         N  L+ L LSS        P   
Sbjct: 135 S-TKLGTQVQLENLQELLLSNNKIQ-ALKSEELDIFANSSLKKLELSSNQIKEF-SPGCF 191

Query: 196 YNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDV 255
           +    L  + L+++++       L                          ++  +R L +
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLE----------------------LANTSIRNLSL 229

Query: 256 SKNNFQGHIPLEIGDI-LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIP 314
           S +            +  + LT+ ++S N L+     SF  +  L++  L  N +     
Sbjct: 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289

Query: 315 EHLAMGCVSLRSLALSNNNLEGHMFSRNF---------NLTNLIWLQLEGNHFVGEIPQS 365
             L  G  ++R L L  +  +  +   +           L  L  L +E N   G     
Sbjct: 290 HSLH-GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM 348

Query: 366 LSKCSSLQGLFLSNNSLSGK--IPRWLGNL--TVLRHIIMPKNHIEGPIPLEFCQLRILQ 421
            +   +L+ L LSN+  S +        +L  + L  + + KN I       F  L  L+
Sbjct: 349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408

Query: 422 ILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGN 481
           +LD+  N I   L                           +     +  + LSYN     
Sbjct: 409 VLDLGLNEIGQELTG-----------------------QEWRGLENIFEIYLSYNKYLQL 445

Query: 482 IPDRVDGLSQLSYLILAHNNLEG--EVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN--- 536
             +    +  L  L+L    L+     P     L  L +LDLSNNN+        +    
Sbjct: 446 TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 505

Query: 537 -TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSG 595
              L  ++NN                         L             Y  +  S L  
Sbjct: 506 LEILDLQHNN-------------------------LARLWKHANPGGPIYFLKGLSHLHI 540

Query: 596 LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKI 655
           L+L  N           +L +++ ++L  NNL     S F+N  +++SL+L  N ++   
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600

Query: 656 PYQL-VELNTLAVFSVAYNNLSGKIP 680
                     L    + +N       
Sbjct: 601 KKVFGPAFRNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  202 bits (515), Expect = 2e-55
 Identities = 88/453 (19%), Positives = 158/453 (34%), Gaps = 50/453 (11%)

Query: 249 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ 308
              + D S       +P    D+ + +TV N++ N L     ++F   + L  LD+  N 
Sbjct: 5   SHEVADCSHLKLT-QVP---DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 309 LTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSK 368
           ++   PE                             L  L  L L+ N       ++ + 
Sbjct: 61  ISKLEPELCQ-------------------------KLPMLKVLNLQHNELSQLSDKTFAF 95

Query: 369 CSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDN 428
           C++L  L L +NS+             L  + +  N +         QL  LQ L +S+N
Sbjct: 96  CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155

Query: 429 NISGSLPSCYDFVC---IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDR 485
            I        D      ++++ LS N +      G F     L  L L+   L  ++ ++
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEK 214

Query: 486 V---DGLSQLSYLILAHNNLEGEVP--IQLCRLNQLQLLDLSNNNLHGHIPSCFDN---- 536
           +      + +  L L+++ L           +   L +LDLS NNL+      F      
Sbjct: 215 LCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQL 274

Query: 537 TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSL--LS 594
                 YNN   L     S   +  +     K+       +  S+          L  L 
Sbjct: 275 EYFFLEYNNIQHLFS--HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332

Query: 595 GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN--NLAGPIPSTFSNLRN--IESLDLSYNK 650
            L++  N + G        L  ++ L+LS++  +L      TF +L +  +  L+L+ NK
Sbjct: 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392

Query: 651 LSWKIPYQLVELNTLAVFSVAYNNLSGKIPERA 683
           +S         L  L V  +  N +  ++  + 
Sbjct: 393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.9 bits (182), Expect = 1e-13
 Identities = 35/172 (20%), Positives = 55/172 (31%), Gaps = 35/172 (20%)

Query: 511 CRLNQLQLLDLSNNNLHGHIPSCFDNTT-LHERYNNGSSLQPFETSFVIMGGMDVDPKKQ 569
           C ++  ++ D S+  L         N T L+  +N    L                    
Sbjct: 2   CTVS-HEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPA------------------ 42

Query: 570 ILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAG 629
              +F             R   L S LD+  N +    P     L  ++ LNL HN L+ 
Sbjct: 43  --ANF------------TRYSQLTS-LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ 87

Query: 630 PIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE 681
               TF+   N+  L L  N +        V+   L    +++N LS     
Sbjct: 88  LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.5 bits (181), Expect = 1e-13
 Identities = 51/243 (20%), Positives = 91/243 (37%), Gaps = 21/243 (8%)

Query: 1   MTNCEVNGVLSGQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSN 60
           +   E+   L+GQ +   +++ E+Y+   +        +     +PS+Q L L   ++ N
Sbjct: 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKY---LQLTRNSFALVPSLQRLMLRRVALKN 468

Query: 61  NSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQL-------IGSI 113
              +      PL +L  L +++N++       L  +  L ILD+  N L           
Sbjct: 469 VDSSPSP-FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527

Query: 114 SSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPN 173
               L  L+ +  L L  N F   I +E   +   LKI D   N +N       +     
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDE-IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV-- 584

Query: 174 FQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSH------IKMNEEFPNWLLENNTKLR 227
             L+SL L       +    F     +L  + +         +    F NW+ E +T + 
Sbjct: 585 -SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIP 643

Query: 228 QLS 230
           +LS
Sbjct: 644 ELS 646

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  236 bits (605), Expect = 2e-68
 Identities = 94/635 (14%), Positives = 176/635 (27%), Gaps = 124/635 (19%)

Query: 74  HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSP---LIHLTSIEDLILS 130
            +  L +      G +P  +  +T L +L + S+    +        +    S E     
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 131 DNHFQ-IPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGI 189
             H+Q   +  +P  + S L      ++     I +S  +T    +   +   S     +
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL---KDTQIGQLSNNITFV 198

Query: 190 TFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQ 249
              K +     L    + +     E      EN       +           L   + K 
Sbjct: 199 --SKAVMRLTKLRQFYMGNSPFVAENICEAWEN------ENSEYAQQYKTEDLKWDNLKD 250

Query: 250 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNAL--------DGSIPSSFGNMNFLQF 301
           L  ++V        +P  +   L  + + N++ N          D    +       +Q 
Sbjct: 251 LTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 302 LDLSNNQL-TGEIPEHLAMGCVSLRSLALSNNNLEGHM--FSRNFNLTNLIWLQLEGNHF 358
           + +  N L T  +   L      L  L    N LEG +  F    +   L  L L  N  
Sbjct: 310 IYIGYNNLKTFPVETSLQ-KMKKLGMLECLYNQLEGKLPAFG---SEIKLASLNLAYNQI 365

Query: 359 VGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWL--GNLTVLRHIIMPKNHIEG-------P 409
                        ++ L  ++N L   IP      +++V+  I    N I         P
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424

Query: 410 IPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLM 469
           +     +   +  +++S+N IS                              F     L 
Sbjct: 425 LDPTPFKGINVSSINLSNNQISKFPKE------------------------LFSTGSPLS 460

Query: 470 ILDLSYNHLNG-------NIPDRVDGLSQLSYLILAHNNLEG-EVPIQLCRLNQLQLLDL 521
            ++L  N L         +  +       L+ + L  N L       +   L  L  +DL
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520

Query: 522 SNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSI 581
           S N+     P+            N S+L+ F                             
Sbjct: 521 SYNSFSK-FPTQP---------LNSSTLKGF----------------------------- 541

Query: 582 TYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNI 641
                     + +  D   NR +   P  I     +  L +  N++         N+   
Sbjct: 542 ---------GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI--- 589

Query: 642 ESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 676
             LD+  N         +       ++ + Y+   
Sbjct: 590 SVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  217 bits (555), Expect = 3e-61
 Identities = 85/666 (12%), Positives = 168/666 (25%), Gaps = 167/666 (25%)

Query: 44  SMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRG----SLPWCLANMTSL 99
           S   +  LSL        S  +   +  L  L+ L +  +  +       P  ++   S 
Sbjct: 79  SNGRVTGLSLEGF---GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 100 RILDVSSNQLIGSI-SSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNE 158
                       +     P    + +    ++ +  Q  I         +       +N 
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS-SRITLKDTQIGQLSNN 194

Query: 159 INAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNW 218
           I                                 K +     L    + +     E    
Sbjct: 195 I-----------------------------TFVSKAVMRLTKLRQFYMGNSPFVAENICE 225

Query: 219 LLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVF 278
             EN       +           L   + K L  ++V        +P  +   L  + + 
Sbjct: 226 AWEN------ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA-LPEMQLI 278

Query: 279 NISMNAL--------DGSIPSSFGNMNFLQFLDLSNNQL-TGEIPEHLAMGCVSLRSLAL 329
           N++ N          D    +       +Q + +  N L T  +   L            
Sbjct: 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL------------ 326

Query: 330 SNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRW 389
                          +  L  L+   N   G++P +      L  L L+ N ++     +
Sbjct: 327 -------------QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANF 372

Query: 390 LGNLTVLRHIIMPKNHIEG-PIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHL 448
            G    + ++    N ++  P   +   + ++  +D S N I                 +
Sbjct: 373 CGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGS---------------V 417

Query: 449 SKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEG---- 504
                         F  + +  ++LS N ++    +     S LS + L  N L      
Sbjct: 418 DGKNFDPLDPT--PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475

Query: 505 ---EVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGG 561
              +          L  +DL  N L   +   F  TTL                      
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPY-------------------- 514

Query: 562 MDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLN 621
                                          L G+DLS N      P Q  N + ++   
Sbjct: 515 -------------------------------LVGIDLSYNSF-SKFPTQPLNSSTLKGFG 542

Query: 622 LSH------NNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNL 675
           + +      N      P   +   ++  L +  N +  K+  ++     ++V  +  N  
Sbjct: 543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKDNPN 599

Query: 676 SGKIPE 681
                 
Sbjct: 600 ISIDLS 605

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  203 bits (518), Expect = 3e-56
 Identities = 76/551 (13%), Positives = 171/551 (31%), Gaps = 58/551 (10%)

Query: 17  HFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLV--H 74
               L+ L +      +N        + + +            +  +T            
Sbjct: 103 QLTELEVLALGSHGEKVN--ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160

Query: 75  LQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHF 134
           L +  +  +  + S+            +   SN +   +S + ++ LT +    + ++ F
Sbjct: 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKA-VMRLTKLRQFYMGNSPF 218

Query: 135 --QIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFP 192
             +         N    + +  E+ + +       +L      L  + + +        P
Sbjct: 219 VAENICEAWENENSEYAQQYKTEDLKWD-------NLK----DLTDVEVYNCPNLT-KLP 266

Query: 193 KFLYNQHDLEYVRLSH--IKMNEEFPNWL-----LENNTKLRQLSLVNDSL-VGPFRLPI 244
            FL    +++ + ++       E+  +            K++ + +  ++L   P    +
Sbjct: 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326

Query: 245 HSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDL 304
              K+L +L+   N  +G +P   G    +L   N++ N +     +  G    ++ L  
Sbjct: 327 QKMKKLGMLECLYNQLEGKLP-AFGS-EIKLASLNLAYNQITEIPANFCGFTEQVENLSF 384

Query: 305 SNNQLTGEIPEHLAMG-CVSLRSLALSNNNLEG-------HMFSRNFNLTNLIWLQLEGN 356
           ++N+L   IP          + ++  S N +          +    F   N+  + L  N
Sbjct: 385 AHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443

Query: 357 HFVGEIPQSLSKCSSLQGLFLSNNSLSG-------KIPRWLGNLTVLRHIIMPKNHIEG- 408
                  +  S  S L  + L  N L+               N  +L  I +  N +   
Sbjct: 444 QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL 503

Query: 409 PIPLEFCQLRILQILDISDNNIS------GSLPSCYDFVCIEQVHLSKNMLHGQLKEGTF 462
                   L  L  +D+S N+ S       +  +   F    Q     N    +  E   
Sbjct: 504 SDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE-GI 562

Query: 463 FNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLS 522
             C +L  L +  N +   + +++     +S L +  N         +C   +  +  L 
Sbjct: 563 TLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLF 619

Query: 523 NNNLHGHIPSC 533
            +     I  C
Sbjct: 620 YDKTQ-DIRGC 629

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  201 bits (513), Expect = 1e-55
 Identities = 58/470 (12%), Positives = 146/470 (31%), Gaps = 72/470 (15%)

Query: 244 IHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDG----SIPSSFGNMNFL 299
           ++S+ ++  L +      G +P  IG  L+ L V  +  +          P         
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 300 QFLDLSNNQLTGEIPEHLAMG-CVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHF 358
           +              ++        L    ++++  +  +   +        +    N+ 
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 359 VGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLR 418
              + +++ + + L+  ++ N+    +            +             L++  L+
Sbjct: 196 -TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY-----AQQYKTEDLKWDNLK 249

Query: 419 ILQILDISDNNISGSLPSC-YDFVCIEQVHLSKNMLHGQLKEGTFFNCLT-------LMI 470
            L  +++ +      LP+       ++ ++++ N      +    +  L        + I
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 471 LDLSYNHL-NGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGH 529
           + + YN+L    +   +  + +L  L   +N LEG++P       +L  L+L+ N +   
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEI 368

Query: 530 IPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITY----TY 585
             +    T                                 +E+  F    + Y      
Sbjct: 369 PANFCGFTEQ-------------------------------VENLSFAHNKLKYIPNIFD 397

Query: 586 QGRVPSLLSGLDLSCNRL-------IGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNL 638
              V  + + +D S N +          + P       + ++NLS+N ++      FS  
Sbjct: 398 AKSVSVMSA-IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456

Query: 639 RNIESLDLSYNKLS-------WKIPYQLVELNTLAVFSVAYNNLSGKIPE 681
             + S++L  N L+                   L    + +N L+    +
Sbjct: 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  196 bits (501), Expect = 5e-54
 Identities = 78/609 (12%), Positives = 170/609 (27%), Gaps = 175/609 (28%)

Query: 93  LANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIF 152
           L +   +  L +      G +  + +  LT +E L L  +  ++                
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDA-IGQLTELEVLALGSHGEKVNER------------- 122

Query: 153 DAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMN 212
                                               +  PK +      E  +   +   
Sbjct: 123 ------------------------------------LFGPKGISANMSDEQKQKMRMHYQ 146

Query: 213 EEFPNWL-LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDI 271
           + F ++   E+ + L +  + +D      +       +   +    NN            
Sbjct: 147 KTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI----------- 195

Query: 272 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN 331
                            +  +   +  L+   + N+    E        C +  +     
Sbjct: 196 ---------------TFVSKAVMRLTKLRQFYMGNSPFVAENI------CEAWENENSEY 234

Query: 332 NNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSL--------S 383
                    +  NL +L  +++     + ++P  L     +Q + ++ N           
Sbjct: 235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD 294

Query: 384 GKIPRWLGNLTVLRHIIMPKNHI-EGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVC 442
            +          ++ I +  N++   P+     +++ L +L+   N + G LP+      
Sbjct: 295 WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA------ 348

Query: 443 IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNL 502
                              F + + L  L+L+YN +     +      Q+  L  AHN L
Sbjct: 349 -------------------FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL 389

Query: 503 EGEVP-IQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGG 561
           +          ++ +  +D S N +       FD   L      G ++            
Sbjct: 390 KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP--LDPTPFKGINVS----------- 436

Query: 562 MDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLN 621
                                             ++LS N++           + + ++N
Sbjct: 437 ---------------------------------SINLSNNQISKFPKELFSTGSPLSSIN 463

Query: 622 LSHNNLAG-------PIPSTFSNLRNIESLDLSYNKLSWKIP--YQLVELNTLAVFSVAY 672
           L  N L              F N   + S+DL +NKL+ K+   ++   L  L    ++Y
Sbjct: 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSY 522

Query: 673 NNLSGKIPE 681
           N+ S   P 
Sbjct: 523 NSFSK-FPT 530

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  176 bits (449), Expect = 5e-47
 Identities = 56/418 (13%), Positives = 129/418 (30%), Gaps = 73/418 (17%)

Query: 278 FNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGH 337
           FN  ++        S  +   +  L L     +G +P+ +      L  LAL ++  + +
Sbjct: 62  FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIG-QLTELEVLALGSHGEKVN 120

Query: 338 MFSRNF----NLTNLIWLQLEGNHFVGEIPQSLSK--CSSLQGLFLSNNSLSGKIPRWLG 391
                        +    Q    H+         +   S L    ++++     I +   
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180

Query: 392 NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKN 451
                  I    N+I   +     +L  L+   + ++                       
Sbjct: 181 ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENI---------------- 223

Query: 452 MLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC 511
                        C      +  Y         + D L  L+ + + +     ++P  L 
Sbjct: 224 -------------CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270

Query: 512 RLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQIL 571
            L ++QL++++ N             +  +  ++  +L                P  + +
Sbjct: 271 ALPEMQLINVACNRG----------ISGEQLKDDWQALADA-------------PVGEKI 307

Query: 572 ESFDFTTKSITYTYQGRVPSLLSG------LDLSCNRLIGHIPPQIGNLTKIQTLNLSHN 625
           +       ++       V + L        L+   N+L G   P  G+  K+ +LNL++N
Sbjct: 308 QIIYIGYNNLKT---FPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYN 363

Query: 626 NLAGPIPSTFSNLRNIESLDLSYNKLSWKIP--YQLVELNTLAVFSVAYNNLSGKIPE 681
            +     +       +E+L  ++NKL   IP  +    ++ ++    +YN +     +
Sbjct: 364 QITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  212 bits (543), Expect = 5e-63
 Identities = 69/294 (23%), Positives = 113/294 (38%), Gaps = 56/294 (19%)

Query: 243 PIHSHKQLRLLDVSKNNFQG--HIPLEIGDILSRLTVFNIS-MNALDGSIPSSFGNMNFL 299
                 ++  LD+S  N      IP  + + L  L    I  +N L G IP +   +  L
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 300 QFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFV 359
            +L +++  ++G IP+ L+                          +  L+ L    N   
Sbjct: 104 HYLYITHTNVSGAIPDFLS-------------------------QIKTLVTLDFSYNALS 138

Query: 360 GEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVL-RHIIMPKNHIEGPIPLEFCQLR 418
           G +P S+S   +L G+    N +SG IP   G+ + L   + + +N + G IP  F  L 
Sbjct: 139 GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198

Query: 419 ILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHL 478
            L  +D+S N + G                             F +      + L+ N L
Sbjct: 199 -LAFVDLSRNMLEGDASV------------------------LFGSDKNTQKIHLAKNSL 233

Query: 479 NGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPS 532
             ++   V     L+ L L +N + G +P  L +L  L  L++S NNL G IP 
Sbjct: 234 AFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  195 bits (499), Expect = 1e-56
 Identities = 71/378 (18%), Positives = 123/378 (32%), Gaps = 108/378 (28%)

Query: 361 EIPQSLSKCSSLQ----GLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEG--PIPLEF 414
           +I + L   ++L          N +  G +         + ++ +   ++    PIP   
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 415 CQLRILQILDISD-NNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDL 473
             L  L  L I   NN+ G +P                                L  L +
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPP------------------------AIAKLTQLHYLYI 108

Query: 474 SYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSC 533
           ++ +++G IPD +  +  L  L  ++N L G +P  +  L  L  +    N + G IP  
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 534 FDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLL 593
           +                                                    G    L 
Sbjct: 169 Y----------------------------------------------------GSFSKLF 176

Query: 594 SGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW 653
           + + +S NRL G IPP   NL  +  ++LS N L G     F + +N + + L+ N L++
Sbjct: 177 TSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235

Query: 654 KIPYQLVELNTLAVFSVAYNNLSGKIPE-----------------------RAAQFATFN 690
            +  ++     L    +  N + G +P+                       +      F+
Sbjct: 236 DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFD 294

Query: 691 ESSYEGNPFLCGPPLPIC 708
            S+Y  N  LCG PLP C
Sbjct: 295 VSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  183 bits (466), Expect = 4e-52
 Identities = 84/358 (23%), Positives = 133/358 (37%), Gaps = 71/358 (19%)

Query: 288 SIPSSFGNMNFLQ----FLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF 343
            I    GN   L       D  N    G + +        + +L LS  NL       + 
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSS 71

Query: 344 --NLTNLIWLQLEG-NHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHII 400
             NL  L +L + G N+ VG IP +++K + L  L++++ ++SG IP +L  +  L  + 
Sbjct: 72  LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 401 MPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVC---IEQVHLSKNMLHGQL 457
              N + G +P     L  L  +    N ISG++P  Y          + +S+N L G++
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKI 190

Query: 458 KEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQ 517
              TF N L L  +DLS N L G+             + LA N+L  ++  ++     L 
Sbjct: 191 PP-TFAN-LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLN 247

Query: 518 LLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFT 577
            LDL NN ++G +P                                       L S +  
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKF-------------------------------LHSLN-- 274

Query: 578 TKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNL--AGPIPS 633
                               +S N L G I PQ GNL +      ++N      P+P+
Sbjct: 275 --------------------VSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSPLPA 311

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  178 bits (453), Expect = 3e-50
 Identities = 63/290 (21%), Positives = 105/290 (36%), Gaps = 55/290 (18%)

Query: 224 TKLRQLSLVND-SLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISM 282
             L  L +    +LVGP    I    QL  L ++  N  G IP  +   +  L   + S 
Sbjct: 76  PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSY 134

Query: 283 NALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRN 342
           NAL G++P S  ++  L  +    N+++G IP+                           
Sbjct: 135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY------------------------- 169

Query: 343 FNLTNLI-WLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIM 401
            + + L   + +  N   G+IP + +   +L  + LS N L G      G+    + I +
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 402 PKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGT 461
            KN +   +  +    + L  LD+ +N I G+LP                          
Sbjct: 229 AKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQ------------------------G 263

Query: 462 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC 511
                 L  L++S+N+L G IP     L +      A+N      P+  C
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  153 bits (390), Expect = 1e-41
 Identities = 69/366 (18%), Positives = 112/366 (30%), Gaps = 90/366 (24%)

Query: 78  LHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLI-HLTSIEDLILSD-NHF- 134
               +    G L         +  LD+S   L         + +L  +  L +   N+  
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 135 -QIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPK 193
             IP +   +   ++L      +  ++  I                            P 
Sbjct: 91  GPIPPA---IAKLTQLHYLYITHTNVSGAI----------------------------PD 119

Query: 194 FLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLL 253
           FL     L  +  S+  ++   P  +                      LP      L  +
Sbjct: 120 FLSQIKTLVTLDFSYNALSGTLPPSI--------------------SSLP-----NLVGI 154

Query: 254 DVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEI 313
               N   G IP   G      T   IS N L G IP +F N+N L F+DLS N L G+ 
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDA 213

Query: 314 PEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQ 373
                                         +  N   + L  N    ++   +    +L 
Sbjct: 214 SVLF-------------------------GSDKNTQKIHLAKNSLAFDLG-KVGLSKNLN 247

Query: 374 GLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNI--S 431
           GL L NN + G +P+ L  L  L  + +  N++ G IP     L+   +   ++N     
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNKCLCG 306

Query: 432 GSLPSC 437
             LP+C
Sbjct: 307 SPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  125 bits (316), Expect = 7e-32
 Identities = 64/332 (19%), Positives = 111/332 (33%), Gaps = 71/332 (21%)

Query: 44  SMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMAD-NDLRGSLPWCLANMTSLRIL 102
               +  L LS  ++      +   L  L +L  L++   N+L G +P  +A +T L  L
Sbjct: 48  QTYRVNNLDLSGLNLPK-PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 103 DVSSNQLIGSISSSPLIHLTSIEDLILSDNHF--QIPISLEPLFNHSRLKIFDAENNEIN 160
            ++   + G+I    L  + ++  L  S N     +P S   + +   L     + N I+
Sbjct: 107 YITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPS---ISSLPNLVGITFDGNRIS 162

Query: 161 AEIIESHSLTTPN--FQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNW 218
             I        P+       L                        + +S  ++  + P  
Sbjct: 163 GAI--------PDSYGSFSKL---------------------FTSMTISRNRLTGKIPPT 193

Query: 219 LLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVF 278
               N  L  + L                        S+N  +G   +  G         
Sbjct: 194 F--ANLNLAFVDL------------------------SRNMLEGDASVLFGS-DKNTQKI 226

Query: 279 NISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHM 338
           +++ N+L   +    G    L  LDL NN++ G +P+ L      L SL +S NNL G +
Sbjct: 227 HLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNNLCGEI 284

Query: 339 FSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCS 370
             +  NL          N  +   P  L  C+
Sbjct: 285 -PQGGNLQRFDVSAYANNKCLCGSP--LPACT 313

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  219 bits (560), Expect = 2e-62
 Identities = 117/623 (18%), Positives = 199/623 (31%), Gaps = 107/623 (17%)

Query: 74  HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNH 133
             + L ++ N LR    +   +   L++LD+S  ++      +    L+ +  LIL+ N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTGNP 87

Query: 134 FQIPISLEPLFNHSRLKIFDAENNEINAEIIES-HSLTTPNFQLQSLLLSSGYRDGITFP 192
            Q  ++L      S L+   A    + +        L      L+ L ++         P
Sbjct: 88  IQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLK----TLKELNVAHNLIQSFKLP 142

Query: 193 KFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRL 252
           ++  N  +LE++ LS  K+   +   L      L Q+ L+N SL                
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDL----RVLHQMPLLNLSL---------------- 182

Query: 253 LDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPS-SFGNMNFLQFLDLSNNQLTG 311
            D+S N      P    +I  RL    +  N    ++       +  L+   L   +   
Sbjct: 183 -DLSLNPMNFIQPGAFKEI--RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

Query: 312 E--IPEHLAMGCVSLRSLALSNNNLEGHMFSRNF------NLTNLIWLQLEGNHFVGEIP 363
           E  + +        L +L +    L    +  +        LTN+    L          
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299

Query: 364 QSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQIL 423
              S     Q L L N          L +L  L          +G        L  L+ L
Sbjct: 300 --FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF-----TSNKGGNAFSEVDLPSLEFL 352

Query: 424 DISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP 483
           D+S N +S                             + F   +L  LDLS+N +   + 
Sbjct: 353 DLSRNGLSFK----------------------GCCSQSDFGTTSLKYLDLSFNGVIT-MS 389

Query: 484 DRVDGLSQLSYLILAHNNLEGEVPIQ-LCRLNQLQLLDLSNNNLHGHIPSCFDN----TT 538
               GL QL +L   H+NL+          L  L  LD+S+ +        F+       
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449

Query: 539 LHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDL 598
           L    N+                          + F                  L+ LDL
Sbjct: 450 LKMAGNSFQENFL-------------------PDIFTELRN-------------LTFLDL 477

Query: 599 SCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQ 658
           S  +L    P    +L+ +Q LN+SHNN        +  L +++ LD S N +      +
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537

Query: 659 LVELNT-LAVFSVAYNNLSGKIP 680
           L    + LA  ++  N+ +    
Sbjct: 538 LQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  205 bits (523), Expect = 4e-57
 Identities = 113/611 (18%), Positives = 197/611 (32%), Gaps = 80/611 (13%)

Query: 120 HLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIES-HSLTTPNFQLQS 178
            + +I    +  N ++IP +L         K  D   N +      S  S      +LQ 
Sbjct: 6   VVPNITYQCMELNFYKIPDNL-----PFSTKNLDLSFNPLRHLGSYSFFSFP----ELQV 56

Query: 179 LLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVG 238
           L LS      I       +   L  + L+   +            + L++L  V  +L  
Sbjct: 57  LDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVAVETNLAS 114

Query: 239 PFRLPIHSHKQLRLLDVSKNNFQG-HIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMN 297
               PI   K L+ L+V+ N  Q   +P    + L+ L   ++S N +     +    ++
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYCTDLRVLH 173

Query: 298 FLQF----LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF-NLTNLIWLQ 352
            +      LDLS N +    P       + L  L L NN    ++       L  L   +
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 353 LEGNHFVGEIPQ---SLSKCSSLQGLFLSNNSLS------GKIPRWLGNLTVLRHIIMPK 403
           L    F  E        S    L  L +    L+        I      LT +    +  
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291

Query: 404 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF 463
             IE      +      Q L++ +               ++++  + N         +  
Sbjct: 292 VTIERVKDFSY--NFGWQHLELVNCKFGQFPTLK--LKSLKRLTFTSNKGGNAF---SEV 344

Query: 464 NCLTLMILDLSYNHLN--GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDL 521
           +  +L  LDLS N L+  G       G + L YL L+ N +   +      L QL+ LD 
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDF 403

Query: 522 SNNNLHGHIP-SCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDF 576
            ++NL      S F +      L   + +                            F+ 
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--------------------GIFNG 443

Query: 577 TTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTF 635
            +              L  L ++ N    +  P I   L  +  L+LS   L    P+ F
Sbjct: 444 LSS-------------LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490

Query: 636 SNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSY- 694
           ++L +++ L++S+N       +    LN+L V   + N++     +    F +       
Sbjct: 491 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 550

Query: 695 EGNPFLCGPPL 705
             N F C    
Sbjct: 551 TQNDFACTCEH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  204 bits (522), Expect = 5e-57
 Identities = 113/647 (17%), Positives = 206/647 (31%), Gaps = 92/647 (14%)

Query: 33  LNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWC 92
           +  +F +I      S + L LS + + +              LQ L ++  +++      
Sbjct: 15  MELNFYKIPDNLPFSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIEDGA 71

Query: 93  LANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIF 152
             +++ L  L ++ N +      +    L+S++ L+  + +     +  P+ +   LK  
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGA-FSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKEL 129

Query: 153 DAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQH---DLEYVRLSHI 209
           +  +N I +  +  +     N  L+ L LSS     I                 + LS  
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTN--LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 210 KMNEEFPNWLLENNTKLRQLSLVNDSLVGPF-RLPIHSHKQLRLLDVSKNNFQGHIPLEI 268
            MN   P        +L +L+L N+       +  I     L +  +    F+    LE 
Sbjct: 188 PMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 269 GDI-----LSRLTVFNISMNALDGS---IPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMG 320
            D      L  LT+    +  LD     I   F  +  +    L +  +           
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS---Y 302

Query: 321 CVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNN 380
               + L L N         +  +L  L +   +G         S     SL+ L LS N
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG-----NAFSEVDLPSLEFLDLSRN 357

Query: 381 SLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDF 440
            LS                       +G           L+ LD+S N +     +    
Sbjct: 358 GLS----------------------FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395

Query: 441 VCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHN 500
             +E +    + L    +   F +   L+ LD+S+ H         +GLS L  L +A N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 501 NLEGEV-PIQLCRLNQLQLLDLSNNNLHGHIPSCFDN----TTLHERYNNGSSLQPFETS 555
           + +    P     L  L  LDLS   L    P+ F++      L+  +NN  SL      
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT---- 511

Query: 556 FVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNL- 614
                             +                  L  LD S N ++     ++ +  
Sbjct: 512 ----------------FPYKCLNS-------------LQVLDYSLNHIMTSKKQELQHFP 542

Query: 615 TKIQTLNLSHNNLAGPIPST--FSNLRNIESLDLSYNKLSWKIPYQL 659
           + +  LNL+ N+ A           +++   L +   ++    P   
Sbjct: 543 SSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  123 bits (310), Expect = 2e-29
 Identities = 65/391 (16%), Positives = 123/391 (31%), Gaps = 52/391 (13%)

Query: 15  FPHFKSLKELYMDDARIALNTSFLQIIGES---MPSIQYLSLSNSSVSNNSRTLDQGLCP 71
               + L  L +++ R+A    +L  I +    + ++   SL      + +    +    
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL-----VSVTIERVKDFSY 302

Query: 72  LVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSD 131
               Q L + +          L ++  L                   + L S+E L LS 
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF------SEVDLPSLEFLDLSR 356

Query: 132 NHFQ-IPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGIT 190
           N         +  F  + LK  D   N +                             IT
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGV-----------------------------IT 387

Query: 191 FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL 250
                     LE++   H  + +     +  +   L  L + +      F    +    L
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 251 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLT 310
            +L ++ N+FQ +   +I   L  LT  ++S   L+   P++F +++ LQ L++S+N   
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507

Query: 311 GEIPEHLAMGCVSLRSLALSNNNLEG---HMFSRNFNLTNLIWLQLEGNHFVGEIPQS-- 365
                       SL+ L  S N++              ++L +L L  N F         
Sbjct: 508 SLDTFPYK-CLNSLQVLDYSLNHIMTSKKQELQHFP--SSLAFLNLTQNDFACTCEHQSF 564

Query: 366 LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVL 396
           L      + L +    +    P     + VL
Sbjct: 565 LQWIKDQRQLLVEVERMECATPSDKQGMPVL 595

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  224 bits (572), Expect = 3e-62
 Identities = 87/648 (13%), Positives = 176/648 (27%), Gaps = 138/648 (21%)

Query: 55  NSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSIS 114
           N  +          L     +  L +A    +G +P  +  +T L++L   ++    S  
Sbjct: 305 NKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGR 364

Query: 115 SSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINA--EIIESHSLTTP 172
                 L + +      +  ++      L    RL + D   + IN   E+      +  
Sbjct: 365 LFGDEEL-TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 173 NFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLV 232
           + +   +   +     I   K +     L+ +  ++        +    +N  +      
Sbjct: 424 SLKDTQIGNLTNRITFI--SKAIQRLTKLQIIYFAN--------SPFTYDNIAV------ 467

Query: 233 NDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSS 292
                                +        +  L   + L  LT   +        +P  
Sbjct: 468 ----------------DWEDANSDYAKQYENEELSWSN-LKDLTDVELYNCPNMTQLPDF 510

Query: 293 FGNMNFLQFLDLSNNQLTGEIPEHLAM--------GCVSLRSLALSNNNLEGHMFSRNF- 343
             ++  LQ L+++ N+                       ++   +  NNLE    S +  
Sbjct: 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ 570

Query: 344 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLG-NLTVLRHIIMP 402
            +  L  L    N       ++      L  L L  N +   IP         +  +   
Sbjct: 571 KMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFS 627

Query: 403 KNHIEG-PIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGT 461
            N ++  P       + ++  +D S N I                               
Sbjct: 628 HNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGR-------------------NISCSMD 668

Query: 462 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLE-------GEVPIQLCRLN 514
            +  +    + LSYN +     +     S +S +IL++N +                   
Sbjct: 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTY 728

Query: 515 QLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESF 574
            L  +DL  N L   +   F  TTL                                   
Sbjct: 729 LLTTIDLRFNKLTS-LSDDFRATTLPY--------------------------------- 754

Query: 575 DFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSH------NNLA 628
                             LS +D+S N      P Q  N ++++   + H      N + 
Sbjct: 755 ------------------LSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRIL 795

Query: 629 GPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 676
              P+  +   ++  L +  N +  K+  +L     L +  +A N   
Sbjct: 796 RQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNI 840

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  177 bits (451), Expect = 2e-46
 Identities = 80/549 (14%), Positives = 170/549 (30%), Gaps = 69/549 (12%)

Query: 14  GFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLV 73
                   +EL  D +    +   +      +   Q L+LS+  +  ++   +  + P+ 
Sbjct: 361 VSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD--LLQDAINRNPEMKPIK 418

Query: 74  HLQELHMADNDLRG------SLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDL 127
               + + D  +         +   +  +T L+I+  +++       +       S    
Sbjct: 419 KDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK 478

Query: 128 ILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIES-HSLTTPNFQLQSLLLSSGYR 186
                     +S   L     L   +  N     ++ +  + L     +LQSL ++    
Sbjct: 479 QYE----NEELSWSNL---KDLTDVELYNCPNMTQLPDFLYDLP----ELQSLNIA---- 523

Query: 187 DGITFPKFLYNQ-HDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVG-PFRLPI 244
                     N+      ++    ++ ++      +   K++   +  ++L   P    +
Sbjct: 524 ---------CNRGISAAQLKADWTRLADDE-----DTGPKIQIFYMGYNNLEEFPASASL 569

Query: 245 HSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDL 304
               +L LLD   N  + H+    G    +LT   +  N ++          + ++ L  
Sbjct: 570 QKMVKLGLLDCVHNKVR-HLE-AFGT-NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGF 626

Query: 305 SNNQLTGEIPEHLAMG-CVSLRSLALSNNNLEGH-----MFSRNFNLTNLIWLQLEGNHF 358
           S+N+L   IP          + S+  S N +            ++   N   + L  N  
Sbjct: 627 SHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI 685

Query: 359 VGEIPQSLSKCSSLQGLFLSNNSLS-------GKIPRWLGNLTVLRHIIMPKNHIEG-PI 410
                +  +  S +  + LSNN ++               N  +L  I +  N +     
Sbjct: 686 QKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSD 745

Query: 411 PLEFCQLRILQILDISDNNIS------GSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFN 464
                 L  L  +D+S N  S       +      F    Q     N +  Q        
Sbjct: 746 DFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT-GITT 804

Query: 465 CLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNN 524
           C +L+ L +  N +   + +      QL  L +A N         +C   +  +  L  +
Sbjct: 805 CPSLIQLQIGSNDIR-KVDE--KLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYD 861

Query: 525 NLHGHIPSC 533
                I  C
Sbjct: 862 KTQ-DIRGC 869

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  174 bits (443), Expect = 2e-45
 Identities = 74/525 (14%), Positives = 157/525 (29%), Gaps = 121/525 (23%)

Query: 175 QLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVND 234
           ++  L L+     G   P  +    +L+ +             +  E  T        + 
Sbjct: 324 RVTGLSLAGFGAKGR-VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHR 382

Query: 235 SLVGPFRLPIHSHKQLRLLDVSKNNFQGH---IPLEIGDILS-RLTVFNISMNALDGSIP 290
             +   ++ +   ++L L D+ ++    +    P++    +S + T      N +   I 
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI-TFIS 441

Query: 291 SSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIW 350
            +   +  LQ +  +N+  T +         V              +      NL +L  
Sbjct: 442 KAIQRLTKLQIIYFANSPFTYDNIA------VDWEDANSDYAKQYENEELSWSNLKDLTD 495

Query: 351 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPI 410
           ++L     + ++P  L     LQ L ++ N       +   + T               +
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS-AAQLKADWT--------------RL 540

Query: 411 PLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMI 470
             +      +QI  +  NN+    P+                        +    + L +
Sbjct: 541 ADDEDTGPKIQIFYMGYNNLE-EFPA----------------------SASLQKMVKLGL 577

Query: 471 LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCR-LNQLQLLDLSNNNLHGH 529
           LD  +N +     +      +L+ L L +N +E E+P   C   +Q++ L  S+N L   
Sbjct: 578 LDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY- 633

Query: 530 IPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRV 589
           IP+ F+  +++                                                 
Sbjct: 634 IPNIFNAKSVYV------------------------------------------------ 645

Query: 590 PSLLSGLDLSCNRLIGHIPPQIG------NLTKIQTLNLSHNNLAGPIPSTFSNLRNIES 643
              +  +D S N+ IG     I             T+ LS+N +       F+    I +
Sbjct: 646 ---MGSVDFSYNK-IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701

Query: 644 LDLSYNKLS-------WKIPYQLVELNTLAVFSVAYNNLSGKIPE 681
           + LS N ++                   L    + +N L+  + +
Sbjct: 702 IILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSD 745

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  167 bits (425), Expect = 3e-43
 Identities = 76/559 (13%), Positives = 176/559 (31%), Gaps = 99/559 (17%)

Query: 156 NNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEF 215
            + I    +E+ S+   +F +    L+      I   +      D  Y  L  I    + 
Sbjct: 226 QSGIKRSELETQSVRGESFTVIDNKLTKDANVPIQLKETAEYIKD--YKALKAIWEALDG 283

Query: 216 PNWLLENNTKLRQLSLVN-------DSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEI 268
            NW   + T    +  +N       D       + + ++ ++  L ++    +G +P  I
Sbjct: 284 KNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAI 343

Query: 269 GDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLA 328
           G  L+ L V +   ++   S              +   +++     +        L    
Sbjct: 344 GQ-LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402

Query: 329 LSNNNLEGH---MFSRNFNLTNLIWLQLEGNH-FVGEIPQSLSKCSSLQGLFLSNNSLSG 384
           L  + +  +      +  +  +L   Q+      +  I +++ + + LQ ++ +N+  + 
Sbjct: 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY 462

Query: 385 KIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIE 444
                        +             L +  L+ L  +++ +      LP         
Sbjct: 463 DNIAVDWEDANSDY-----AKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-------- 509

Query: 445 QVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG---------NIPDRVDGLSQLSYL 495
                             ++   L  L+++ N              + D  D   ++   
Sbjct: 510 ----------------FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553

Query: 496 ILAHNNLEG-EVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE---RYNNGSSLQP 551
            + +NNLE       L ++ +L LLD  +N +  H+ +   N  L +    YN    + P
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIEEI-P 611

Query: 552 FETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPP-- 609
            +                                       + GL  S N+L  +IP   
Sbjct: 612 EDF--------------------------------CAFTDQVEGLGFSHNKL-KYIPNIF 638

Query: 610 QIGNLTKIQTLNLSHNNLAGPIPSTFS-----NLRNIESLDLSYNKLSWKIPYQLVELNT 664
              ++  + +++ S+N +     +           N  ++ LSYN++           + 
Sbjct: 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP 698

Query: 665 LAVFSVAYNNLSGKIPERA 683
           ++   ++ N ++  IPE +
Sbjct: 699 ISTIILSNNLMT-SIPENS 716

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  163 bits (414), Expect = 8e-42
 Identities = 61/424 (14%), Positives = 118/424 (27%), Gaps = 73/424 (17%)

Query: 272 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN 331
             R+T  +++     G +P + G +  L+ L    +  T               S    +
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKH 381

Query: 332 NNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLG 391
                              +++       +  Q L+    LQ     N  +         
Sbjct: 382 R------------------IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 392 NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKN 451
           +L     I    N I   I     +L  LQI+  +++  +                    
Sbjct: 424 SLKDT-QIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNI---------------- 465

Query: 452 MLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC 511
                         +     +  Y     N       L  L+ + L +     ++P  L 
Sbjct: 466 -------------AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512

Query: 512 RLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQIL 571
            L +LQ L+++ N          D T L +  + G  +Q F   +  +         Q +
Sbjct: 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKM 572

Query: 572 ESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPI 631
                                L  LD   N++        G   K+  L L +N +    
Sbjct: 573 VK-------------------LGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEEIP 611

Query: 632 PSTFSNLRNIESLDLSYNKLSWKIP--YQLVELNTLAVFSVAYNNLSGKIPERAAQFATF 689
               +    +E L  S+NKL   IP  +    +  +     +YN +  +    +     +
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670

Query: 690 NESS 693
              +
Sbjct: 671 KGIN 674

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  160 bits (407), Expect = 6e-41
 Identities = 73/454 (16%), Positives = 135/454 (29%), Gaps = 79/454 (17%)

Query: 13  QGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPL 72
           +       L+ +Y  ++                        +NS  +      +     L
Sbjct: 442 KAIQRLTKLQIIYFANSPF-----------TYDNIAVDWEDANSDYAKQYENEELSWSNL 490

Query: 73  VHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSP--------LIHLTSI 124
             L ++ + +      LP  L ++  L+ L+++ N+ I +                   I
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550

Query: 125 EDLILSDNHF-QIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSS 183
           +   +  N+  + P S   L    +L + D  +N++   +    +      +L  L L  
Sbjct: 551 QIFYMGYNNLEEFPASAS-LQKMVKLGLLDCVHNKVR-HLEAFGTNV----KLTDLKLD- 603

Query: 184 GYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVG-PFRL 242
                       YNQ       +  I      P        ++  L   ++ L   P   
Sbjct: 604 ------------YNQ-------IEEI------PEDFCAFTDQVEGLGFSHNKLKYIPNIF 638

Query: 243 PIHSHKQLRLLDVSKNNFQGHIPLEIGDILS-----RLTVFNISMNALDGSIPSSFGNMN 297
              S   +  +D S N         I   +        +   +S N +       F   +
Sbjct: 639 NAKSVYVMGSVDFSYNKIGS-EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS 697

Query: 298 FLQFLDLSNNQLTGEIPEHLAM-------GCVSLRSLALSNNNLEGHMFSRNF-NLTNLI 349
            +  + LSNN +T  IPE+              L ++ L  N L           L  L 
Sbjct: 698 PISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLS 756

Query: 350 WLQLEGNHFVGEIPQSLSKCSSLQGL------FLSNNSLSGKIPRWLGNLTVLRHIIMPK 403
            + +  N F    P      S L+            N +  + P  +     L  + +  
Sbjct: 757 NMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815

Query: 404 NHIEGPIPLEFCQLRILQILDISDNNI-SGSLPS 436
           N I   +  +      L ILDI+DN   S  + S
Sbjct: 816 NDIRK-VDEKLTPQ--LYILDIADNPNISIDVTS 846

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  212 bits (541), Expect = 1e-59
 Identities = 99/534 (18%), Positives = 186/534 (34%), Gaps = 31/534 (5%)

Query: 18  FKSLKELYMDDARIA--LNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQG-LCPLVH 74
             S + L      +    NT+F       + ++ +L L+          + +        
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTF-----SRLINLTFLDLTR----CQIYWIHEDTFQSQHR 82

Query: 75  LQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHF 134
           L  L +  N L       L+   +L+ L       I SI   PL +  ++E L L  NH 
Sbjct: 83  LDTLVLTANPLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHI 141

Query: 135 QIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKF 194
              I L   F   +LK+ D +NN I    +    +++   Q  +L L+    D       
Sbjct: 142 SS-IKLPKGFPTEKLKVLDFQNNAI--HYLSKEDMSSLQ-QATNLSLNLNGNDIAGIEPG 197

Query: 195 LYNQHDLEYVRLSHIKMNEEFPNWLLENN-TKLRQLSLVNDSLVGPFRLPIHSHKQLRL- 252
            ++    + +     +        L  +    L   +  +               ++ + 
Sbjct: 198 AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE 257

Query: 253 -LDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTG 311
            +++ K+ F   I        S L   +++   L   +PS    ++ L+ L LS N+   
Sbjct: 258 SINLQKHYFFN-ISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFEN 315

Query: 312 EIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGNH--FVGEIPQSLSK 368
            + +  A    SL  L++  N     + +    NL NL  L L  +           L  
Sbjct: 316 -LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

Query: 369 CSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLE-FCQLRILQILDISD 427
            S LQ L LS N               L  + +    ++       F  L +L++L++S 
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434

Query: 428 NNISGSLP-SCYDFVCIEQVHLSKNMLHG--QLKEGTFFNCLTLMILDLSYNHLNGNIPD 484
           + +  S          ++ ++L  N        K  +      L IL LS+  L+     
Sbjct: 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494

Query: 485 RVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTT 538
               L  ++++ L+HN L       L  L  +  L+L++N++   +PS     +
Sbjct: 495 AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILS 547

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  196 bits (501), Expect = 3e-54
 Identities = 110/623 (17%), Positives = 195/623 (31%), Gaps = 89/623 (14%)

Query: 100 RILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEI 159
           +  +  +  L    +  P     S E L  S N     I          L   D    +I
Sbjct: 15  KTYNCENLGL----NEIPGTLPNSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQI 69

Query: 160 NAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWL 219
               I   +                            +QH L+ + L+   +       L
Sbjct: 70  --YWIHEDTF--------------------------QSQHRLDTLVLTANPLIFMAETAL 101

Query: 220 LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFN 279
                 L+ L  +   +     +P+H+ K L  L +  N+    I L  G    +L V +
Sbjct: 102 -SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLD 159

Query: 280 ISMNALDGSIPSSFGNMNFLQ--FLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGH 337
              NA+         ++       L+L+ N + G  P   A      +SL          
Sbjct: 160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPG--AFDSAVFQSLNFGGTQNLLV 217

Query: 338 MFS--RNFNLTNLIWLQLEGNHFVGEIPQSLSKCS--SLQGLFLSNNSLSGKIPRWLGNL 393
           +F   +N  + +L     E        P         S++ + L  +             
Sbjct: 218 IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCF 277

Query: 394 TVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLP-SCYDFVCIEQVHLSKNM 452
           + L+ + +   H+   +P     L  L+ L +S N        S  +F  +  + +  N 
Sbjct: 278 SGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336

Query: 453 LHGQLKEGTFFNCLTLMILDLSYNHLN--GNIPDRVDGLSQLSYLILAHNNLEGEVPIQL 510
              +L  G   N   L  LDLS++ +        ++  LS L  L L++N          
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396

Query: 511 CRLNQLQLLDLSNNNLHGHIP-SCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVD 565
               QL+LLDL+   L      S F N      L+  ++                     
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE-------------- 442

Query: 566 PKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRL---IGHIPPQIGNLTKIQTLNL 622
                 + FD                 L  L+L  N            +  L +++ L L
Sbjct: 443 ------QLFDGLPA-------------LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483

Query: 623 SHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPER 682
           S  +L+      F++L+ +  +DLS+N+L+      L  L  +   ++A N++S  +P  
Sbjct: 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL 542

Query: 683 AAQFATFNESSYEGNPFLCGPPL 705
               +     +   NP  C    
Sbjct: 543 LPILSQQRTINLRQNPLDCTCSN 565

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  160 bits (406), Expect = 1e-41
 Identities = 80/525 (15%), Positives = 166/525 (31%), Gaps = 49/525 (9%)

Query: 10  LSGQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGL 69
           +      + K+L+ LY+    I   +S     G     ++ L   N+++   S+     L
Sbjct: 120 IDFIPLHNQKTLESLYLGSNHI---SSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL 176

Query: 70  CPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIG-SISSSPLIHLTSIEDLI 128
                   L++  ND+   +     +    + L+    Q +           + S+    
Sbjct: 177 QQA-TNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234

Query: 129 LSDNHF-QIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRD 187
             D     I  ++        ++  + + +        +                     
Sbjct: 235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT--------------------- 273

Query: 188 GITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSH 247
                   +    L+ + L+   ++ E P+  L   + L++L L  +      ++   + 
Sbjct: 274 -------FHCFSGLQELDLTATHLS-ELPSG-LVGLSTLKKLVLSANKFENLCQISASNF 324

Query: 248 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGS--IPSSFGNMNFLQFLDLS 305
             L  L +  N  +  +     + L  L   ++S + ++ S        N++ LQ L+LS
Sbjct: 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384

Query: 306 NNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEIPQ 364
            N+      E     C  L  L L+   L+       F NL  L  L L  +       Q
Sbjct: 385 YNEPLSLKTEAFK-ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443

Query: 365 SLSKCSSLQGLFLSNNSLSGKI---PRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQ 421
                 +LQ L L  N            L  L  L  +++    +       F  L+++ 
Sbjct: 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN 503

Query: 422 ILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGN 481
            +D+S N ++ S       +    ++L+ N +   +             ++L  N L+  
Sbjct: 504 HVDLSHNRLTSSSIEALSHLKGIYLNLASNHISI-ILPSLLPILSQQRTINLRQNPLDCT 562

Query: 482 IPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 526
                  +  L +       LE            L+ + LS+  L
Sbjct: 563 C----SNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  123 bits (312), Expect = 1e-29
 Identities = 65/346 (18%), Positives = 126/346 (36%), Gaps = 21/346 (6%)

Query: 43  ESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRIL 102
                +Q L L+      +   L  GL  L  L++L ++ N          +N  SL  L
Sbjct: 275 HCFSGLQELDLTA----THLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330

Query: 103 DVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ-IPISLEPLFNHSRLKIFDAENNEINA 161
            +  N     + +  L +L ++ +L LS +  +        L N S L+  +   NE   
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL- 389

Query: 162 EIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLE 221
             +++ +      QL+ L L+              N H L+ + LSH  ++      L +
Sbjct: 390 -SLKTEAFKE-CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD-ISSEQLFD 446

Query: 222 NNTKLRQLSLVNDSLVGPFRLPIHS---HKQLRLLDVSKNNFQGHIPLEIGDILSRLTVF 278
               L+ L+L  +          +S     +L +L +S  +            L  +   
Sbjct: 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS-LKMMNHV 505

Query: 279 NISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHM 338
           ++S N L  S   +  ++  +  L+L++N ++  +P  L       R++ L  N L+   
Sbjct: 506 DLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLP-ILSQQRTINLRQNPLDC-- 561

Query: 339 FSRNFNLTNLI-WLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS 383
                +    + W +                   L+G+ LS+ +LS
Sbjct: 562 ---TCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  189 bits (481), Expect = 2e-51
 Identities = 95/538 (17%), Positives = 175/538 (32%), Gaps = 62/538 (11%)

Query: 15  FPHFKSLKELYMDDARIALNTSFLQIIGES---MPSIQYLSLSNSSVSNNSRTLDQGLCP 71
           F +F  L+ L +             I  ++   +  +  L L+ + + + S         
Sbjct: 52  FSNFSELQWLDLS------RCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS---FSG 102

Query: 72  LVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSD 131
           L  L+ L   +  L     + +  + +L+ L+V+ N +      +   +LT++  + LS 
Sbjct: 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162

Query: 132 NHFQ--IPISLEPLFN-HSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDG 188
           N+ Q      L+ L          D   N I  + I+  +      +L  L L   +   
Sbjct: 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPI--DFIQDQAFQ--GIKLHELTLRGNFNSS 218

Query: 189 ITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNT-------KLRQLSLVNDSLVGPFR 241
                 L N   L   RL   +  +E    + E +         + +  L   +      
Sbjct: 219 NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI 278

Query: 242 LPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQF 301
           +  H    +  + ++  + +    LE      +    +I    L         ++ FL+ 
Sbjct: 279 VKFHCLANVSAMSLAGVSIKY---LEDVPKHFKWQSLSIIRCQLKQF---PTLDLPFLKS 332

Query: 302 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLE--GHMFSRNFNLTNLIWLQLEGNHFV 359
           L L+ N+ +    +   +   SL  L LS N L   G     +    +L  L L  N  +
Sbjct: 333 LTLTMNKGSISFKK---VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389

Query: 360 GEIPQSLSKCSSLQGLFLSNNSLSGKIPRW-LGNLTVLRHIIMPKNHIEGPIPLEFCQLR 418
             +  +      LQ L   +++L          +L  L ++ +   + +      F  L 
Sbjct: 390 -IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448

Query: 419 ILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHL 478
            L  L ++ N+   +  S                         F N   L  LDLS   L
Sbjct: 449 SLNTLKMAGNSFKDNTLS-----------------------NVFANTTNLTFLDLSKCQL 485

Query: 479 NGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN 536
                   D L +L  L ++HNNL         +L  L  LD S N +          
Sbjct: 486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  184 bits (468), Expect = 8e-50
 Identities = 108/622 (17%), Positives = 204/622 (32%), Gaps = 115/622 (18%)

Query: 74  HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNH 133
             + + ++ N L+    +  +N + L+ LD+S  + I +I       L  + +LIL+ N 
Sbjct: 33  STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNP 91

Query: 134 FQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPK 193
            Q   S       + L+   A   ++ +  +ES  +      L+ L ++           
Sbjct: 92  IQS-FSPGSFSGLTSLENLVAVETKLAS--LESFPIG-QLITLKKLNVA----------- 136

Query: 194 FLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLL 253
             +N        +   K+   F N                                L  +
Sbjct: 137 --HNF-------IHSCKLPAYFSNL-----------------------------TNLVHV 158

Query: 254 DVSKNNFQGHIPLEIGDILSRLTVF----NISMNALDGSIPSSFGNMNFLQFLDLSNNQL 309
           D+S N  Q  I +     L          ++S+N +D     +F  +  L  L L  N  
Sbjct: 159 DLSYNYIQ-TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFN 216

Query: 310 TGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLT--------NLIWLQLEGNHFVGE 361
           +  I +        L    L     +       F  +         +   +L   +   +
Sbjct: 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD 276

Query: 362 IPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQ 421
                   +++  + L+  S+       +      + + + +  ++         L  L+
Sbjct: 277 DIVKFHCLANVSAMSLAGVSIKYLED--VPKHFKWQSLSIIRCQLKQ---FPTLDLPFLK 331

Query: 422 ILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFN--CLTLMILDLSYNHLN 479
            L ++ N  S S         +  + LS+N L       ++ +    +L  LDLS+N   
Sbjct: 332 SLTLTMNKGSISFKKV-ALPSLSYLDLSRNALSF-SGCCSYSDLGTNSLRHLDLSFNGAI 389

Query: 480 GNIPDRVDGLSQLSYLILAHNNLEGEVPIQ-LCRLNQLQLLDLSNNNLHGHIPSCFDN-- 536
             +     GL +L +L   H+ L+          L +L  LD+S  N        F    
Sbjct: 390 I-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448

Query: 537 --TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS 594
              TL    N+                            F  TT              L+
Sbjct: 449 SLNTLKMAGNSFKDNTL-------------------SNVFANTTN-------------LT 476

Query: 595 GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK 654
            LDLS  +L          L ++Q LN+SHNNL     S ++ L ++ +LD S+N++   
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536

Query: 655 IPYQLVELNTLAVFSVAYNNLS 676
                    +LA F++  N+++
Sbjct: 537 KGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  179 bits (457), Expect = 3e-48
 Identities = 112/640 (17%), Positives = 192/640 (30%), Gaps = 99/640 (15%)

Query: 87  GSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNH 146
           GSL  C+  + ++        +L    S  P    +S +++ LS N  +I +      N 
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKL----SKVPDDIPSSTKNIDLSFNPLKI-LKSYSFSNF 55

Query: 147 SRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRL 206
           S L+  D    EI                                 K  +  H L  + L
Sbjct: 56  SELQWLDLSRCEIETIE----------------------------DKAWHGLHHLSNLIL 87

Query: 207 SHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPL 266
           +   +   F        T L  L  V   L      PI     L+ L+V+ N        
Sbjct: 88  TGNPIQS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP 146

Query: 267 EIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQF----LDLSNNQLTGEIPEHLAMGCV 322
                L+ L   ++S N +     +    +         LD+S N +     +  A   +
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQ--AFQGI 204

Query: 323 SLRSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLF----- 376
            L  L L  N    ++      NL  L   +L    F  E    + + S ++GL      
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264

Query: 377 ---LSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGS 433
              L+  +           L  +  + +    I+    +        Q L I    +   
Sbjct: 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFK--WQSLSIIRCQLK-Q 321

Query: 434 LPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN--GNIPDRVDGLSQ 491
            P+  D   ++ + L+ N               +L  LDLS N L+  G       G + 
Sbjct: 322 FPT-LDLPFLKSLTLTMNKGSISF---KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377

Query: 492 LSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIP-SCFDN----TTLHERYNNG 546
           L +L L+ N     +      L +LQ LD  ++ L      S F +      L   Y N 
Sbjct: 378 LRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436

Query: 547 SSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGH 606
                                      F   T              L+ L ++ N    +
Sbjct: 437 KIDFD--------------------GIFLGLTS-------------LNTLKMAGNSFKDN 463

Query: 607 IPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTL 665
               +  N T +  L+LS   L       F  L  ++ L++S+N L +       +L +L
Sbjct: 464 TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523

Query: 666 AVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL 705
           +    ++N +            +    +   N   C    
Sbjct: 524 STLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH 563

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  145 bits (367), Expect = 1e-36
 Identities = 76/429 (17%), Positives = 143/429 (33%), Gaps = 31/429 (7%)

Query: 15  FPHFKSLKELYMDDARI-ALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLV 73
           F +  +L  + +    I  +  + LQ + E+      L +S     N    +       +
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL----NPIDFIQDQAFQGI 204

Query: 74  HLQELHMADNDLRGSLPW-CLANMTSLRILDVSSNQL-----IGSISSSPLIHLTSIEDL 127
            L EL +  N    ++   CL N+  L +  +   +      +     S +  L  +   
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264

Query: 128 ILSDNHFQI-PISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYR 186
                +       +      + +         I    +E       +F+ QSL +     
Sbjct: 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK--YLEDV---PKHFKWQSLSIIRCQL 319

Query: 187 DGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSL--VGPFRLPI 244
                    +    L+ + L+  K +  F    L +   L  L L  ++L   G      
Sbjct: 320 KQFPTLDLPF----LKSLTLTMNKGSISFKKVALPS---LSYLDLSRNALSFSGCCSYSD 372

Query: 245 HSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIP-SSFGNMNFLQFLD 303
                LR LD+S N     +       L  L   +   + L      S+F ++  L +LD
Sbjct: 373 LGTNSLRHLDLSFNGAI-IMSANFMG-LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430

Query: 304 LSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEI 362
           +S      +       G  SL +L ++ N+ + +  S  F N TNL +L L         
Sbjct: 431 ISYTNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS 489

Query: 363 PQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQI 422
                    LQ L +S+N+L          L  L  +    N IE    +     + L  
Sbjct: 490 WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAF 549

Query: 423 LDISDNNIS 431
            ++++N+++
Sbjct: 550 FNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 69.3 bits (170), Expect = 2e-12
 Identities = 36/216 (16%), Positives = 79/216 (36%), Gaps = 16/216 (7%)

Query: 20  SLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELH 79
           SL+ L +      + ++        +  +Q+L   +S++   +         L  L  L 
Sbjct: 377 SLRHLDLSFNGAIIMSANFM----GLEELQHLDFQHSTLKRVTEF--SAFLSLEKLLYLD 430

Query: 80  MADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPIS 139
           ++  + +         +TSL  L ++ N    +  S+   + T++  L LS    +  IS
Sbjct: 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-IS 489

Query: 140 LEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQH 199
                   RL++ +  +N +   +  SH     +  L +L  S    +        +   
Sbjct: 490 WGVFDTLHRLQLLNMSHNNLL-FLDSSHYNQLYS--LSTLDCSFNRIETS-KGILQHFPK 545

Query: 200 DLEYVRLSH-----IKMNEEFPNWLLENNTKLRQLS 230
            L +  L++     I  +++F  W+ E    L  + 
Sbjct: 546 SLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVE 581

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  180 bits (459), Expect = 1e-47
 Identities = 109/753 (14%), Positives = 213/753 (28%), Gaps = 136/753 (18%)

Query: 52  SLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIG 111
           S            L Q    L   + L ++ N +R         +  L++L++ S     
Sbjct: 3   SFDGRIAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL 62

Query: 112 SISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTT 171
           +I      +L ++  L L  +     +  +       L         ++  +++      
Sbjct: 63  TIDKEAFRNLPNLRILDLGSSKIYF-LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR- 120

Query: 172 PNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSL 231
               L  L LS      +         + L+ +  S  ++                   +
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-----------------LV 163

Query: 232 VNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPS 291
               L           K L    ++ N+    + ++ G  ++                  
Sbjct: 164 CEHELEPL------QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV------------ 205

Query: 292 SFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWL 351
                  L+ LD+S N  T +I                 +N +            +++  
Sbjct: 206 -------LEILDVSGNGWTVDITG-------------NFSNAISKSQAFSLILAHHIMGA 245

Query: 352 QLEGNHFVGEIPQSLS--KCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGP 409
               ++       + +    SS++ L LS+  +     R    L  L+ + +  N I   
Sbjct: 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI 305

Query: 410 IPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLM 469
               F  L  LQ+L++S N +                         +L    F+    + 
Sbjct: 306 ADEAFYGLDNLQVLNLSYNLLG------------------------ELYSSNFYGLPKVA 341

Query: 470 ILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGH 529
            +DL  NH+          L +L  L L  N L       +  +  +  + LS N L   
Sbjct: 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTL 396

Query: 530 IPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRV 589
                    +H   N   +L         +  +        L+         +     + 
Sbjct: 397 PKINLTANLIHLSENRLENLDIL----YFLLRV------PHLQILILNQNRFSSCSGDQT 446

Query: 590 PSLLSG---LDLSCNRLIGHIPPQI-----GNLTKIQTLNLSHNNLAGPIPSTFSNLRNI 641
           PS       L L  N L      ++       L+ +Q L L+HN L    P  FS+L  +
Sbjct: 447 PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL 506

Query: 642 ESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLC 701
             L L+ N+L+      L     L +  ++ N L    P+    F + +      N F+C
Sbjct: 507 RGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPD---VFVSLSVLDITHNKFIC 561

Query: 702 ------------GPPLPICISPTTMPEASPSNEGDNNLIDMDI-------------FFIT 736
                          + I   P  +    P +    +L  +               F + 
Sbjct: 562 ECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLF 621

Query: 737 FTTSYVIVIFGIVAVLYVNARWRRRWFYLVEMW 769
              +  + +F +  +     R      Y     
Sbjct: 622 IVCTVTLTLFLMTILTVTKFRGFCFICYKTAQR 654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  169 bits (429), Expect = 1e-43
 Identities = 102/558 (18%), Positives = 195/558 (34%), Gaps = 76/558 (13%)

Query: 43  ESMPSIQYLSLSNSSVS---------------------NNSRTLDQGLC-PLVHLQELHM 80
           + + + + L LS + +                          T+D+     L +L+ L +
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 81  ADNDLRGSLPWCLANMTSLRILDVSSNQL-IGSISSSPLIHLTSIEDLILSDNHFQIPIS 139
             + +    P     +  L  L +    L    +      +L ++  L LS N  +  + 
Sbjct: 81  GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS-LY 139

Query: 140 LEPLFNH-SRLKIFDAENNEINAEIIESHSLTT-PNFQLQSLLLSSGYRDGITFPKFLYN 197
           L P F   + LK  D  +N+I   ++  H L       L    L++          +   
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQI--FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197

Query: 198 QHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSK 257
            +    + L  +         +  N   +      ++++       +     +       
Sbjct: 198 MNPFRNMVLEILD--------VSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249

Query: 258 NNFQGHIPLEI--GDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPE 315
           +N +         G   S +   ++S   +       F  +  L+ L+L+ N++  +I +
Sbjct: 250 HNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIAD 307

Query: 316 HLAMGCVSLRSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQG 374
               G  +L+ L LS N L   ++S NF  L  + ++ L+ NH      Q+      LQ 
Sbjct: 308 EAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366

Query: 375 LFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEG---------------------PIPLE 413
           L L +N+L+      +  +  +  I +  N +                        I   
Sbjct: 367 LDLRDNALTT-----IHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYF 421

Query: 414 FCQLRILQILDISDNNISGSLPS--CYDFVCIEQVHLSKNMLHG----QLKEGTFFNCLT 467
             ++  LQIL ++ N  S         +   +EQ+ L +NML      +L    F     
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481

Query: 468 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 527
           L +L L++N+LN   P     L+ L  L L  N L       L     L++LD+S N L 
Sbjct: 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLL 539

Query: 528 GHIPSCFDNTTLHERYNN 545
              P  F + ++ +  +N
Sbjct: 540 APNPDVFVSLSVLDITHN 557

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  101 bits (253), Expect = 4e-22
 Identities = 72/428 (16%), Positives = 134/428 (31%), Gaps = 76/428 (17%)

Query: 20  SLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQEL 78
           S++ L +    +    S    + E++  ++ L+L+     N    +       L +LQ L
Sbjct: 267 SVRHLDLSHGFV---FSLNSRVFETLKDLKVLNLAY----NKINKIADEAFYGLDNLQVL 319

Query: 79  HMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPI 138
           +++ N L          +  +  +D+  N  I  I       L  ++ L L DN      
Sbjct: 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDN------ 372

Query: 139 SLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQ 198
           +L  +     +       N++        +L   N     + LS    + +    FL   
Sbjct: 373 ALTTIHFIPSIPDIFLSGNKLV-------TLPKINLTANLIHLSENRLENLDILYFLLRV 425

Query: 199 HDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKN 258
             L+ + L+              N          + S              L  L + +N
Sbjct: 426 PHLQILILNQ-------------NR-------FSSCSGDQTPSEN----PSLEQLFLGEN 461

Query: 259 NFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLA 318
             Q     E+                        F  ++ LQ L L++N L   +P  + 
Sbjct: 462 MLQLAWETELC--------------------WDVFEGLSHLQVLYLNHNYLN-SLPPGVF 500

Query: 319 MGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLS 378
               +LR L+L++N L   + S N    NL  L +  N  +   P       SL  L ++
Sbjct: 501 SHLTALRGLSLNSNRL--TVLSHNDLPANLEILDISRNQLLAPNPDVF---VSLSVLDIT 555

Query: 379 NNSLSGKIP-RWLGNLTVLRHIIMPKN--HIEGPIPLEFCQLRILQILDISDNNISGSLP 435
           +N    +       N     ++ +      I    P  F  + +   L     +    L 
Sbjct: 556 HNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFS-LSTEGCDEEEVLK 614

Query: 436 SCYDFVCI 443
           S    + I
Sbjct: 615 SLKFSLFI 622

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 73.3 bits (180), Expect = 2e-13
 Identities = 62/332 (18%), Positives = 122/332 (36%), Gaps = 37/332 (11%)

Query: 10  LSGQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGL 69
           ++ + F    +L+ L +    +             +P + Y+ L  + ++          
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLL---GELYSSNFYGLPKVAYIDLQKNHIAIIQDQT---F 358

Query: 70  CPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLIL 129
             L  LQ L + DN L       +  + S+  + +S N+L+ ++    L    +   + L
Sbjct: 359 KFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV-TLPKINL----TANLIHL 408

Query: 130 SDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSS-----G 184
           S+N  +    L  L     L+I     N             + N  L+ L L        
Sbjct: 409 SENRLENLDILYFLLRVPHLQILILNQNRF--SSCSGDQTPSENPSLEQLFLGENMLQLA 466

Query: 185 YRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPI 244
           +   + +  F    H L+ + L+H  +    P  +  + T LR LSL ++ L     L  
Sbjct: 467 WETELCWDVFEGLSH-LQVLYLNHNYL-NSLPPGVFSHLTALRGLSLNSNRLT---VLSH 521

Query: 245 HSHK-QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLD 303
           +     L +LD+S+N      P    D+   L+V +I+ N              F+ +L+
Sbjct: 522 NDLPANLEILDISRNQLLAPNP----DVFVSLSVLDITHNKFICECE----LSTFINWLN 573

Query: 304 LSNNQLTGEIPEHLAMGCVSLRSLALSNNNLE 335
            +N  + G   +   +   S   ++L + + E
Sbjct: 574 HTNVTIAGPPADIYCVYPDSFSGVSLFSLSTE 605

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  154 bits (391), Expect = 7e-40
 Identities = 89/560 (15%), Positives = 178/560 (31%), Gaps = 81/560 (14%)

Query: 97  TSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAEN 156
            +++ LD+S N+ I  I    L    +++ LIL  +     I  +  ++   L+  D  +
Sbjct: 26  AAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSD 83

Query: 157 NEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFP 216
           N +++  + S     P   L+ L L       +       N  +L+ +R+ +++   E  
Sbjct: 84  NHLSS--LSSSWFG-PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140

Query: 217 NWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLT 276
                  T L +L +   SL       + S + +  L +  +     +     DILS + 
Sbjct: 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVR 199

Query: 277 VFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG 336
              +    L     S          +     + +  + +      + L    L  + +E 
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYILELSEVE- 257

Query: 337 HMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVL 396
                +  L  L       +  V E+ +   +  +++ L +    L   +      L  +
Sbjct: 258 ---FDDCTLNGLGDFNPSESDVVSELGKV--ETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 397 RHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQ 456
           + I +  + +          L+ L+ LD+S+N +                          
Sbjct: 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV----------------------EEY 350

Query: 457 LKEGTFFNCLT-LMILDLSYNHLN--GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRL 513
           LK          L  L LS NHL       + +  L  L+ L ++ N     +P      
Sbjct: 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP 409

Query: 514 NQLQLLDLSNNNLHGHIPSC-FDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQIL 571
            +++ L+LS+  +   + +C       L    NN  S   F                   
Sbjct: 410 EKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPR---------------- 452

Query: 572 ESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPI 631
                                L  L +S N+L   +P        +  + +S N L    
Sbjct: 453 ---------------------LQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVP 489

Query: 632 PSTFSNLRNIESLDLSYNKL 651
              F  L +++ + L  N  
Sbjct: 490 DGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  142 bits (361), Expect = 4e-36
 Identities = 94/503 (18%), Positives = 181/503 (35%), Gaps = 42/503 (8%)

Query: 59  SNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPL 118
           S +  ++  GL     ++ L ++ N +       L    +L++L + S++ I +I     
Sbjct: 14  SRSFTSIPSGLTA--AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAF 70

Query: 119 IHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQS 178
             L S+E L LSDNH    +S       S LK  +   N      +   SL      LQ+
Sbjct: 71  YSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQT--LGVTSLFPNLTNLQT 127

Query: 179 LLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVG 238
           L + +                 L  + +  + +   + +  L++   +  L+L       
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSL-RNYQSQSLKSIRDIHHLTLHLSESAF 186

Query: 239 PFRLPIHSHKQLRLLDVSKNNFQG--HIPLEIGDILSRLTVFNISMNALDG-------SI 289
              +       +R L++   N       PL + ++ S +       + L          +
Sbjct: 187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246

Query: 290 PSSFGNMNFLQFLDLSNNQLT-------GEIPEHLAMGCVSLRSLALSNNNLEGHMFSRN 342
                 ++ ++F D + N L          + E   +  V++R L +    L   + +  
Sbjct: 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306

Query: 343 FNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRW---LGNLTVLRHI 399
             L  +  + +E +              SL+ L LS N +  +  +     G    L+ +
Sbjct: 307 SLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366

Query: 400 IMPKNHIE--GPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQL 457
           ++ +NH+            L+ L  LDIS N       SC     +  ++LS   +    
Sbjct: 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR--- 423

Query: 458 KEGTFFNCL--TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQ 515
                  C+  TL +LD+S N+L+ +       L +L  L ++ N L+  +P        
Sbjct: 424 ---VVKTCIPQTLEVLDVSNNNLD-SFSL---FLPRLQELYISRNKLK-TLP-DASLFPV 474

Query: 516 LQLLDLSNNNLHGHIPSCFDNTT 538
           L ++ +S N L       FD  T
Sbjct: 475 LLVMKISRNQLKSVPDGIFDRLT 497

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  142 bits (361), Expect = 5e-36
 Identities = 84/460 (18%), Positives = 159/460 (34%), Gaps = 68/460 (14%)

Query: 244 IHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLD 303
           + +   L++L +  +     I  +    L  L   ++S N L     S FG ++ L++L+
Sbjct: 46  LRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104

Query: 304 LSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEI 362
           L  N         L     +L++L + N      +   +F  LT+L  L+++        
Sbjct: 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164

Query: 363 PQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEG-----------PIP 411
            QSL     +  L L  +  +  +  +   L+ +R++ +   ++               P
Sbjct: 165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224

Query: 412 LEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNML-------HGQLKEGTFFN 464
           ++    R   + D S N +   L    +   +E    + N L          + E     
Sbjct: 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284

Query: 465 CLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCR-LNQLQLLDLSN 523
            +T+  L +   +L  ++      L ++  + + ++ +   VP    + L  L+ LDLS 
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSE 343

Query: 524 NNL---HGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDF 576
           N +   +    +C        TL    N+  S+Q      + +                 
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL----------------- 386

Query: 577 TTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFS 636
                         +L S LD+S N     +P       K++ LNLS   +         
Sbjct: 387 -------------KNLTS-LDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQ 431

Query: 637 NLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 676
            L   E LD+S N L       L  L  L    ++ N L 
Sbjct: 432 TL---EVLDVSNNNLD-SFSLFLPRLQEL---YISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  142 bits (359), Expect = 8e-36
 Identities = 83/481 (17%), Positives = 173/481 (35%), Gaps = 41/481 (8%)

Query: 44  SMPSIQYLSLSNSSVSNNSRTLDQGLC-PLVHLQELHMADNDLRGSLPWCLANMTSLRIL 102
           +  ++Q L L +    +   T++      L  L+ L ++DN L          ++SL+ L
Sbjct: 48  ACANLQVLILKS----SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103

Query: 103 DVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAE 162
           ++  N       +S   +LT+++ L + +      I        + L   + +   +   
Sbjct: 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN- 162

Query: 163 IIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWL--- 219
             +S SL      +  L L       +    F      + Y+ L    +     + L   
Sbjct: 163 -YQSQSL-KSIRDIHHLTLHLSESAFL-LEIFADILSSVRYLELRDTNLARFQFSPLPVD 219

Query: 220 ----LENNTKLRQLSLVNDSLVGPFRLP--IHSHKQLRLLDVSKNNFQGHIPLEIGDI-- 271
                      R   L ++S     +L   I    ++   D + N      P E   +  
Sbjct: 220 EVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE 279

Query: 272 -----LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRS 326
                   +   +I    L   + + +  +  ++ + + N+++   +P   +    SL  
Sbjct: 280 LGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEF 338

Query: 327 LALSNNNLE---GHMFSRNFNLTNLIWLQLEGNHF--VGEIPQSLSKCSSLQGLFLSNNS 381
           L LS N +        +      +L  L L  NH   + +  + L    +L  L +S N+
Sbjct: 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398

Query: 382 LSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFV 441
               +P        +R + +    I     ++ C  + L++LD+S+NN+  S        
Sbjct: 399 FH-PMPDSCQWPEKMRFLNLSSTGIRV---VKTCIPQTLEVLDVSNNNLD-SFSL--FLP 451

Query: 442 CIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNN 501
            ++++++S+N L   L + + F  L   ++ +S N L        D L+ L  + L  N 
Sbjct: 452 RLQELYISRNKLK-TLPDASLFPVLL--VMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508

Query: 502 L 502
            
Sbjct: 509 W 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  141 bits (356), Expect = 2e-35
 Identities = 71/438 (16%), Positives = 142/438 (32%), Gaps = 53/438 (12%)

Query: 250 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQL 309
           ++ LD+S N    +I        + L V  +  + ++     +F ++  L+ LDLS+N L
Sbjct: 28  MKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 310 TGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEIP-QSLS 367
           +  +         SL+ L L  N  +    +  F NLTNL  L++       EI     +
Sbjct: 87  S-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 368 KCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISD 427
             +SL  L +   SL     + L ++  + H+ +  +     + +    L  ++ L++ D
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 428 NNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVD 487
            N++    S      +             L + +F   L L+   L  + +        D
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE------FD 259

Query: 488 GLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN----TTLHERY 543
             +         +  +    +       ++ L +    L   + + +        +    
Sbjct: 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319

Query: 544 NNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRL 603
           +    +                                           L  LDLS N +
Sbjct: 320 SKVFLVPC--------------------SFSQHLKS-------------LEFLDLSENLM 346

Query: 604 IGHIPPQ---IGNLTKIQTLNLSHNNLA--GPIPSTFSNLRNIESLDLSYNKLSWKIPYQ 658
           +          G    +QTL LS N+L            L+N+ SLD+S N     +P  
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDS 405

Query: 659 LVELNTLAVFSVAYNNLS 676
                 +   +++   + 
Sbjct: 406 CQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  132 bits (334), Expect = 1e-32
 Identities = 64/387 (16%), Positives = 119/387 (30%), Gaps = 28/387 (7%)

Query: 299 LQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN---LEGHMFSRNFNLTNLIWLQLEG 355
               D  +   T  IP  L     +++SL LS N    +            NL  L L+ 
Sbjct: 7   SGVCDGRSRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLR---ACANLQVLILKS 59

Query: 356 NHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHI-EGPIPLEF 414
           +        +     SL+ L LS+N LS     W G L+ L+++ +  N      +   F
Sbjct: 60  SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 415 CQLRILQILDISDNNISGSLPSCY--DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILD 472
             L  LQ L I +      +          + ++ +    L    +  +  +   +  L 
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLT 178

Query: 473 LSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPS 532
           L  +     +    D LS + YL L   NL       L        +             
Sbjct: 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238

Query: 533 CFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSL 592
            F+   L +       L   E     + G+      +     +                 
Sbjct: 239 SFNE--LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT--------- 287

Query: 593 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 652
           +  L +    L   +      L K++ + + ++ +     S   +L+++E LDLS N + 
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347

Query: 653 WKIPYQLVELNTLA---VFSVAYNNLS 676
            +                  ++ N+L 
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 35/220 (15%), Positives = 67/220 (30%), Gaps = 42/220 (19%)

Query: 463 FNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLS 522
            +C    + D        +IP  +   + +  L L+ N +       L     LQ+L L 
Sbjct: 2   LSCDASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILK 58

Query: 523 NNNLHGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTT 578
           ++ ++      F +      L    N+ SSL                        F   +
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS--------------------SWFGPLS 98

Query: 579 KSITYTYQGRVPSLLSGLDLSCNRLIG-HIPPQIGNLTKIQTLNLSHNNLAGPIP-STFS 636
                         L  L+L  N      +     NLT +QTL + +      I    F+
Sbjct: 99  S-------------LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 637 NLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 676
            L ++  L++    L       L  +  +   ++  +  +
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.2 bits (115), Expect = 9e-06
 Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 16/122 (13%)

Query: 14  GFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLV 73
                + ++ L +    I        +      +++ L +SN    NN  +    L    
Sbjct: 405 SCQWPEKMRFLNLSSTGIR------VVKTCIPQTLEVLDVSN----NNLDSFSLFL---P 451

Query: 74  HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNH 133
            LQEL+++ N L+ +LP   +    L ++ +S NQ + S+       LTS++ + L  N 
Sbjct: 452 RLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQ-LKSVPDGIFDRLTSLQKIWLHTNP 508

Query: 134 FQ 135
           + 
Sbjct: 509 WD 510

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  152 bits (385), Expect = 5e-39
 Identities = 106/523 (20%), Positives = 189/523 (36%), Gaps = 49/523 (9%)

Query: 15  FPHFKSLKELYMDDARIAL--NTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQG-LCP 71
           F  F  L+ L +    I    + ++     +S+  +  L L+     N  ++L  G    
Sbjct: 48  FFSFPELQVLDLSRCEIQTIEDGAY-----QSLSHLSTLILTG----NPIQSLALGAFSG 98

Query: 72  LVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSD 131
           L  LQ+L   + +L     + + ++ +L+ L+V+ N +          +LT++E L LS 
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 132 NHFQ--IPISLEPLFNHSRLKIF-DAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDG 188
           N  Q      L  L     L +  D   N +N   I+  +      +L  L L + +   
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF--IQPGAFK--EIRLHKLTLRNNFDSL 214

Query: 189 ITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHK 248
                 +     LE  RL   +           N   L +             L    + 
Sbjct: 215 NVMKTCIQGLAGLEVHRLVLGE---------FRNEGNLEKFD--------KSALEGLCNL 257

Query: 249 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ 308
            +    ++  ++     +++ + L+ ++ F++    ++     S+      Q L+L N +
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCK 315

Query: 309 LTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGN--HFVGEIPQSL 366
                   L     SL+ L  ++N           +L +L +L L  N   F G   QS 
Sbjct: 316 FGQFPTLKL----KSLKRLTFTSNKG--GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 367 SKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLE-FCQLRILQILDI 425
              +SL+ L LS N +   +      L  L H+    ++++       F  LR L  LDI
Sbjct: 370 FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 426 SDNNISGSLPSCYD-FVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPD 484
           S  +   +    ++    +E + ++ N          F     L  LDLS   L    P 
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

Query: 485 RVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 527
             + LS L  L +A N L+        RL  LQ + L  N   
Sbjct: 489 AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  146 bits (371), Expect = 3e-37
 Identities = 104/603 (17%), Positives = 180/603 (29%), Gaps = 122/603 (20%)

Query: 97  TSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAEN 156
            S + LD+S N  +  + S        ++ L LS    Q  I      + S L       
Sbjct: 28  FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTG 85

Query: 157 NEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFP 216
           N                  +QSL                                     
Sbjct: 86  N-----------------PIQSL------------------------------------A 92

Query: 217 NWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLT 276
                  + L++L  V  +L      PI   K L+ L+V+ N  Q     E    L+ L 
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 277 VFNISMNALDGSIPSSFGNMNFLQF----LDLSNNQLTGEIPEHLAMGCVSLRSLALSNN 332
             ++S N +     +    ++ +      LDLS N +    P       + L  L L NN
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE--IRLHKLTLRNN 210

Query: 333 NLEGHMFSRNF-NLTNLIWLQLEGNHFVGEI------PQSLSKCSSLQGLFLSNNSLSG- 384
               ++       L  L   +L    F  E         +L    +L         L   
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270

Query: 385 --KIPRWLGNLTVLRHIIMPKNHIEGPIPLEF-CQLRILQILDISDNNISGSLPSCYDFV 441
              I      LT +    +    IE      +    + L++++                 
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL-----KLK 325

Query: 442 CIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN--GNIPDRVDGLSQLSYLILAH 499
            ++++  + N         +  +  +L  LDLS N L+  G       G + L YL L+ 
Sbjct: 326 SLKRLTFTSNKGG---NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 500 NNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIP-SCFDN----TTLHERYNNGSSLQPFET 554
           N +   +      L QL+ LD  ++NL      S F +      L   + +         
Sbjct: 383 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--- 438

Query: 555 SFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GN 613
                              F+  +              L  L ++ N    +  P I   
Sbjct: 439 -----------------GIFNGLSS-------------LEVLKMAGNSFQENFLPDIFTE 468

Query: 614 LTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYN 673
           L  +  L+LS   L    P+ F++L +++ L+++ N+L          L +L    +  N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

Query: 674 NLS 676
              
Sbjct: 529 PWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  144 bits (366), Expect = 1e-36
 Identities = 99/505 (19%), Positives = 180/505 (35%), Gaps = 49/505 (9%)

Query: 74  HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNH 133
             + L ++ N LR    +   +   L++LD+S  + I +I       L+ +  LIL+ N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP 87

Query: 134 FQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPK 193
            Q  ++L      S L+   A    +    +E+  +      L+ L ++         P+
Sbjct: 88  IQS-LALGAFSGLSSLQKLVAVETNL--ASLENFPIGHLK-TLKELNVAHNLIQSFKLPE 143

Query: 194 FLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSL-----------VGPFRL 242
           +  N  +LE++ LS  K+   +   L      L Q+ L+N SL            G F+ 
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDL----RVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

Query: 243 PIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSI------PSSFGNM 296
                 +L  L +  N    ++       L+ L V  + +              S+   +
Sbjct: 200 I-----RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 297 NFLQF--LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG-HMFSRNFNLTNLIWLQL 353
             L      L+      +    L     ++ S +L +  +E    FS NF   +L  +  
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 314

Query: 354 EGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE--GPIP 411
           +   F         K  SL+ L  ++N           +L  L  + + +N +   G   
Sbjct: 315 KFGQF------PTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 412 LEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMIL 471
                   L+ LD+S N +     +      +E +    + L    +   F +   L+ L
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426

Query: 472 DLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQ-LCRLNQLQLLDLSNNNLHGHI 530
           D+S+ H         +GLS L  L +A N+ +          L  L  LDLS   L    
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486

Query: 531 PSCFDN----TTLHERYNNGSSLQP 551
           P+ F++      L+   N   S+  
Sbjct: 487 PTAFNSLSSLQVLNMASNQLKSVPD 511

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  137 bits (348), Expect = 3e-34
 Identities = 82/467 (17%), Positives = 156/467 (33%), Gaps = 40/467 (8%)

Query: 250 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQL 309
            + LD+S N  + H+          L V ++S   +      ++ +++ L  L L+ N +
Sbjct: 30  TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 310 TGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHF-VGEIPQSLSK 368
              +      G  SL+ L     NL         +L  L  L +  N     ++P+  S 
Sbjct: 89  Q-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 369 CSSLQGLFLSNNSLSGKIPRWLGNLTVLR----HIIMPKNHIEGPIPLEFCQLRILQILD 424
            ++L+ L LS+N +       L  L  +      + +  N +    P  F ++R L  L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLT 206

Query: 425 ISDNNISGSLPS--CYDFVCIEQVHLSKNMLHGQ-----LKEGTFFNCLTLMILDLSYNH 477
           + +N  S ++          +E   L       +       +        L I +    +
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 478 LNG---NIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCF 534
           L+    +I D  + L+ +S   L    +E             Q L+L N           
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKL 324

Query: 535 DN-TTLHERYNNGSSLQPFET----SFVIMGGMDVDPKKQILESFDFTTK----SITYTY 585
            +   L    N G +           F+ +    +  K    +S   TT      +++  
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 586 QGRVPSLLSG------LDLSCNRLIGHIPPQI--GNLTKIQTLNLSHNNLAGPIPSTFSN 637
              + S   G      LD   + L   +       +L  +  L++SH +        F+ 
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443

Query: 638 LRNIESLDLSYNKLSWKI-PYQLVELNTLAVFSVAYNNLSGKIPERA 683
           L ++E L ++ N       P    EL  L    ++   L  ++   A
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTA 489

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  131 bits (332), Expect = 3e-32
 Identities = 103/489 (21%), Positives = 179/489 (36%), Gaps = 43/489 (8%)

Query: 15  FPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQG-LCPLV 73
           +     L  L +    I    S        + S+Q L         N  +L+   +  L 
Sbjct: 72  YQSLSHLSTLILTGNPI---QSLALGAFSGLSSLQKLVAVE----TNLASLENFPIGHLK 124

Query: 74  HLQELHMADNDLR-GSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTS----IEDLI 128
            L+EL++A N ++   LP   +N+T+L  LD+SSN+ I SI  + L  L         L 
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLD 183

Query: 129 LSDNHFQIPISLEP-LFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRD 187
           LS N       ++P  F   RL      NN  +  ++++        ++  L+L     +
Sbjct: 184 LSLNPMN---FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 188 G-ITFPKFLYNQH----DLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVG-PFR 241
           G +        +      +E  RL+++    +    L    T +   SLV+ ++      
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300

Query: 242 LPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQF 301
                 + L L++     F           L  L     + N    +   S  ++  L+F
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLK-------LKSLKRLTFTSNKGGNAF--SEVDLPSLEF 351

Query: 302 LDLSNNQLTG-EIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFV 359
           LDLS N L+          G  SL+ L LS N +     S NF  L  L  L  + ++  
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--ITMSSNFLGLEQLEHLDFQHSNLK 409

Query: 360 GEIPQS-LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLE-FCQL 417
                S      +L  L +S+             L+ L  + M  N  +     + F +L
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 418 RILQILDISDNNISGSLPSC--YDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSY 475
           R L  LD+S   +   L          ++ ++++ N L   + +G F    +L  + L  
Sbjct: 470 RNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHT 527

Query: 476 NHLNGNIPD 484
           N  + + P 
Sbjct: 528 NPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  127 bits (322), Expect = 5e-31
 Identities = 82/441 (18%), Positives = 162/441 (36%), Gaps = 33/441 (7%)

Query: 10  LSGQGFPHFKSLKELYMDD---ARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLD 66
           L      H K+LKEL +         L   F      ++ ++++L LS++ + +   T  
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYF-----SNLTNLEHLDLSSNKIQSIYCTDL 169

Query: 67  QGLCPL-VHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIE 125
           + L  + +    L ++ N +    P     +  L  L + +N    ++  + +  L  +E
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLE 228

Query: 126 DLILSDNHFQI-----PISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLL 180
              L    F+            L     L I +     ++  + +   L      + S  
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288

Query: 181 LSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPF 240
           L S   + +    + +    LE V         +FP   L++  +L   S    +     
Sbjct: 289 LVSVTIERVKDFSYNFGWQHLELVNCKF----GQFPTLKLKSLKRLTFTSNKGGNAFSEV 344

Query: 241 RLPIHSHKQLRLLDVSKNNFQG-HIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFL 299
            LP      L  LD+S+N         +     + L   ++S N +  ++ S+F  +  L
Sbjct: 345 DLP-----SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQL 398

Query: 300 QFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG---HMFSRNFNLTNLIWLQLEGN 356
           + LD  ++ L       + +   +L  L +S+ +       +F+    L++L  L++ GN
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN---GLSSLEVLKMAGN 455

Query: 357 HFVGEIPQ-SLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFC 415
            F         ++  +L  L LS   L    P    +L+ L+ + M  N ++      F 
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515

Query: 416 QLRILQILDISDNNISGSLPS 436
           +L  LQ + +  N    S P 
Sbjct: 516 RLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  125 bits (316), Expect = 3e-30
 Identities = 75/411 (18%), Positives = 136/411 (33%), Gaps = 51/411 (12%)

Query: 303 DLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEI 362
                    +IP++L     S ++L LS N L        F+   L  L L         
Sbjct: 13  QCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 363 PQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQI 422
             +    S L  L L+ N +          L+ L+ ++  + ++          L+ L+ 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 423 LDISDNNISGSLPSCYDFVC---IEQVHLSKNMLHGQLKEGTFFN----CLTLMILDLSY 475
           L+++ N I  S      F     +E + LS N +   +            L  + LDLS 
Sbjct: 129 LNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 476 NHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCR-LNQLQLLDL------SNNNLHG 528
           N +N  I        +L  L L +N     V     + L  L++  L      +  NL  
Sbjct: 187 NPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 529 HIPSCFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQG 587
              S  +    L       + L  +         +D+      + SF   + +I      
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDI-----IDLFNCLTNVSSFSLVSVTIERVKDF 300

Query: 588 RVPSLLSGLDLSCNRL--------------------IGHIPPQIGNLTKIQTLNLSHNNL 627
                   L+L   +                      G+   ++ +L  ++ L+LS N L
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGL 359

Query: 628 A--GPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 676
           +  G    +     +++ LDLS+N +   +    + L  L      ++NL 
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 409

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  149 bits (378), Expect = 1e-38
 Identities = 67/393 (17%), Positives = 133/393 (33%), Gaps = 30/393 (7%)

Query: 267 EIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRS 326
           EI    +R  +  ++ ++L  ++ S   +   ++ LDLS N L+      LA     L  
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-PFTKLEL 62

Query: 327 LALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKI 386
           L LS+N L         +L+ L  L L  N+      Q L    S++ L  +NN++S   
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVS 115

Query: 387 PRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVC---I 443
                    +    +  N I     L+      +Q LD+  N I  ++           +
Sbjct: 116 CSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTL 171

Query: 444 EQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLE 503
           E ++L  N ++  +K         L  LDLS N L   +       + ++++ L +N L 
Sbjct: 172 EHLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

Query: 504 GEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMD 563
             +   L     L+  DL  N  H     C        +     ++       +     +
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFH-----CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281

Query: 564 VDPKKQILESFDFTTKSITYTYQGRVPSL----LSGLDLSCNRLIGHIPPQIGNLTKIQT 619
                 +     +  + +   +  R+ +L     + L    +     +  +  N  + + 
Sbjct: 282 ECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSE-TERLECERENQARQRE 340

Query: 620 LNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 652
           ++         I       +   +L+     L 
Sbjct: 341 IDALKEQYRTVIDQVTLRKQAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  120 bits (303), Expect = 5e-29
 Identities = 66/449 (14%), Positives = 141/449 (31%), Gaps = 63/449 (14%)

Query: 88  SLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ--IPISLEPLFN 145
           ++     N    +I  V+ +  +    +S      ++++L LS N         L P   
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF-- 57

Query: 146 HSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVR 205
            ++L++ +  +N +  E ++  SL+     L++L L+              N        
Sbjct: 58  -TKLELLNLSSNVLY-ETLDLESLS----TLRTLDLN-------------NNY------- 91

Query: 206 LSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIP 265
           +  +                +  L   N+++    R+     +  + + ++ N       
Sbjct: 92  VQEL-----------LVGPSIETLHAANNNIS---RVSCSRGQGKKNIYLANNKITMLRD 137

Query: 266 LEIGDILSRLTVFNISMNALDG-SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSL 324
           L+ G   SR+   ++ +N +D  +      + + L+ L+L  N +  ++   +      L
Sbjct: 138 LDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV--VFAKL 193

Query: 325 RSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS 383
           ++L LS+N L        F +   + W+ L  N  V  I ++L    +L+   L  N   
Sbjct: 194 KTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

Query: 384 -GKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVC 442
            G +  +      ++ +             E C +    +           LP+ +    
Sbjct: 251 CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV--PTLGHYGAYCCE-DLPAPFADRL 307

Query: 443 IEQVHLSKNMLHGQLK-----EGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLIL 497
           I        +L GQ       E    N      +D         I            L  
Sbjct: 308 IALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQ 367

Query: 498 AHNNLEGEVPIQLCRLNQLQLLDLSNNNL 526
               L+ +V        +L          
Sbjct: 368 KKKALDEQVSNGRRAHAELDGTLQQAVGQ 396

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  116 bits (291), Expect = 2e-27
 Identities = 59/399 (14%), Positives = 117/399 (29%), Gaps = 27/399 (6%)

Query: 145 NHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYV 204
           N +R KI    ++ +   +            ++ L LS      I+    L     LE +
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAW---NVKELDLSGNPLSQIS-AADLAPFTKLELL 63

Query: 205 RLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHI 264
            LS   + E      LE+ + LR L L N+ +       +     +  L  + NN    +
Sbjct: 64  NLSSNVLYETLD---LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RV 114

Query: 265 PLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSL 324
               G     +    ++ N +        G  + +Q+LDL  N++       LA    +L
Sbjct: 115 SCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 325 RSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSG 384
             L L  N +             L  L L  N     +       + +  + L NN L  
Sbjct: 172 EHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 385 KIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISG-SLPSCYDFVCI 443
            I + L     L H  +  N        +F   +  ++  ++   +   +  +  +    
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 444 EQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGN----IPDRVDGLSQLSYLILAH 499
              H         L        + L   + +     G+    +    +  ++   +    
Sbjct: 287 TLGHYGAYCC-EDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALK 345

Query: 500 NNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTT 538
                 +     R      L+     L   + +      
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHA 384

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  116 bits (291), Expect = 2e-27
 Identities = 65/489 (13%), Positives = 153/489 (31%), Gaps = 77/489 (15%)

Query: 41  IGESMPSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPWCLANMTSL 99
           I ++    +   +++    ++ +           +++EL ++ N L       LA  T L
Sbjct: 5   IKQNGNRYKIEKVTD----SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 100 RILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEI 159
            +L++SSN L     +  L  L+++  L L++N+      ++ L     ++   A NN I
Sbjct: 61  ELLNLSSNVL---YETLDLESLSTLRTLDLNNNY------VQELLVGPSIETLHAANNNI 111

Query: 160 NAEIIESHSLTTPNFQ-LQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNW 218
           +        ++    Q  +++ L+              N+       ++ +       + 
Sbjct: 112 S-------RVSCSRGQGKKNIYLA-------------NNK-------ITML------RDL 138

Query: 219 LLENNTKLRQLSLVNDSLVG-PFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTV 277
                ++++ L L  + +    F     S   L  L++  N     +  ++    ++L  
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV--FAKLKT 195

Query: 278 FNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGH 337
            ++S N L   +   F +   + ++ L NN+L   I + L     +L    L  N     
Sbjct: 196 LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFH-C 251

Query: 338 MFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLR 397
              R+F   N     +          Q+  +C+                  +   L  L+
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALK 311

Query: 398 HIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQL 457
                               +   +L    +          +     ++   K      +
Sbjct: 312 -------------------RKEHALLSGQGSETERLECERENQARQREIDALKEQYR-TV 351

Query: 458 KEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQ 517
            +         + L+     L+  + +     ++L   +        E+       + LQ
Sbjct: 352 IDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI-ELQHATEEQSPLQ 410

Query: 518 LLDLSNNNL 526
           LL       
Sbjct: 411 LLRAIVKRY 419

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 83.7 bits (207), Expect = 6e-17
 Identities = 38/219 (17%), Positives = 74/219 (33%), Gaps = 24/219 (10%)

Query: 462 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDL 521
             N     I  ++ + L   +         +  L L+ N L       L    +L+LL+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 522 SNNNLHGHIPSCFDNTTLHE---RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTT 578
           S+N L+         +TL       N    L    +                +E+     
Sbjct: 66  SSNVLY-ETLDLESLSTLRTLDLNNNYVQELLVGPS----------------IETLHAAN 108

Query: 579 KSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAG-PIPSTFSN 637
            +I+     R     + + L+ N++        G  +++Q L+L  N +         ++
Sbjct: 109 NNISRVSCSRGQGKKN-IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 638 LRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 676
              +E L+L YN +   +    V    L    ++ N L+
Sbjct: 168 SDTLEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLA 204

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.8 bits (124), Expect = 7e-07
 Identities = 15/67 (22%), Positives = 29/67 (43%)

Query: 611 IGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSV 670
             N  + +   ++ ++L   + S   +  N++ LDLS N LS      L     L + ++
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 671 AYNNLSG 677
           + N L  
Sbjct: 66  SSNVLYE 72

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  144 bits (366), Expect = 4e-37
 Identities = 101/497 (20%), Positives = 177/497 (35%), Gaps = 72/497 (14%)

Query: 31  IALNTSFLQIIG-ESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSL 89
           I  +T   QI    ++       L  ++V++           L  +  L      ++ S+
Sbjct: 8   ITQDTPINQIFTDTALAEKMKTVLGKTNVTDTV-----SQTDLDQVTTLQADRLGIK-SI 61

Query: 90  PWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRL 149
              +  + +L  ++ S+NQL      +PL +LT + D+++++N       + PL N + L
Sbjct: 62  D-GVEYLNNLTQINFSNNQLT---DITPLKNLTKLVDILMNNNQIA---DITPLANLTNL 114

Query: 150 KIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHI 209
                 NN+I  +I    +LT     L  L LSS   + I+    L     L+ +   + 
Sbjct: 115 TGLTLFNNQIT-DIDPLKNLT----NLNRLELSS---NTISDISALSGLTSLQQLSFGN- 165

Query: 210 KMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIG 269
           ++ +  P   L N T L +L + ++ +       +     L  L  + N      PL I 
Sbjct: 166 QVTDLKP---LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI- 219

Query: 270 DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLAL 329
             L+ L   +++ N L      +  ++  L  LDL+NNQ++   P     G   L  L L
Sbjct: 220 --LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKL 272

Query: 330 SNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRW 389
             N +     S    LT L  L+L  N      P  +S   +L  L L  N++S   P  
Sbjct: 273 GANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-- 326

Query: 390 LGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLS 449
           + +LT L+ +    N +     L    L  +  L    N IS   P              
Sbjct: 327 VSSLTKLQRLFFYNNKVSDVSSLA--NLTNINWLSAGHNQISDLTP-------------- 370

Query: 450 KNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQ 509
                         N   +  L L+         +    +S  + +      L    P  
Sbjct: 371 ------------LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APAT 416

Query: 510 LCRLNQLQLLDLSNNNL 526
           +         D++ N  
Sbjct: 417 ISDGGSYTEPDITWNLP 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  142 bits (360), Expect = 2e-36
 Identities = 90/457 (19%), Positives = 166/457 (36%), Gaps = 66/457 (14%)

Query: 93  LANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIF 152
              +       +    +  ++       L  +  L       +   S++ +   + L   
Sbjct: 20  DTALAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQI 73

Query: 153 DAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMN 212
           +  NN++  +I    +LT    +L  +L+++     I     L N  +L  + L + ++ 
Sbjct: 74  NFSNNQLT-DITPLKNLT----KLVDILMNNNQ---IADITPLANLTNLTGLTLFNNQIT 125

Query: 213 EEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDIL 272
           +  P   L+N T L +L L ++++       +     L+ L    N      PL     L
Sbjct: 126 DIDP---LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLKPLA---NL 176

Query: 273 SRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN 332
           + L   +IS N +  S  S    +  L+ L  +NNQ++   P        +L  L+L+ N
Sbjct: 177 TTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITPLG---ILTNLDELSLNGN 231

Query: 333 NLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGN 392
            L+        +LTNL  L L  N      P  LS  + L  L L  N +S   P  L  
Sbjct: 232 QLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG 285

Query: 393 LTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNM 452
           LT L ++ + +N +E   P+    L+ L  L +  NNIS   P                 
Sbjct: 286 LTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP----------------- 326

Query: 453 LHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCR 512
                      +   L  L    N ++      +  L+ +++L   HN +    P+    
Sbjct: 327 ---------VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPLA--N 373

Query: 513 LNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSL 549
           L ++  L L++        +   N ++     N +  
Sbjct: 374 LTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGA 410

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  139 bits (353), Expect = 2e-35
 Identities = 97/440 (22%), Positives = 155/440 (35%), Gaps = 66/440 (15%)

Query: 243 PIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFL 302
              +  +     + K N    +       L ++T        +          +N L  +
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVSQTD---LDQVTTLQADRLGI--KSIDGVEYLNNLTQI 73

Query: 303 DLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEI 362
           + SNNQLT   P  L      L  + ++NN +     +   NLTNL  L L  N      
Sbjct: 74  NFSNNQLTDITP--LK-NLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDID 128

Query: 363 PQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQI 422
           P  L   ++L  L LS+N++S      L  LT L+ +    N +    PL    L  L+ 
Sbjct: 129 P--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSF-GNQVTDLKPLA--NLTTLER 181

Query: 423 LDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLT-LMILDLSYNHLNGN 481
           LDIS N +S  +        +E +  + N    Q+ + T    LT L  L L+ N L   
Sbjct: 182 LDISSNKVS-DISVLAKLTNLESLIATNN----QISDITPLGILTNLDELSLNGNQLKD- 235

Query: 482 IPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE 541
               +  L+ L+ L LA+N +    P+    L +L  L L  N +   I      T L  
Sbjct: 236 -IGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISN-ISPLAGLTALTN 291

Query: 542 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCN 601
              N + L                   + +                     L+ L L  N
Sbjct: 292 LELNENQL-------------------EDISPISNLKN-------------LTYLTLYFN 319

Query: 602 RLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVE 661
            +    P  + +LTK+Q L   +N ++       +NL NI  L   +N++S   P  L  
Sbjct: 320 NISDISP--VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LAN 373

Query: 662 LNTLAVFSVAYNNLSGKIPE 681
           L  +    +     +     
Sbjct: 374 LTRITQLGLNDQAWTNAPVN 393

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  137 bits (346), Expect = 1e-34
 Identities = 104/482 (21%), Positives = 178/482 (36%), Gaps = 47/482 (9%)

Query: 220 LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFN 279
                +  +  L   ++     +      Q+  L   +   +    +E    L+ LT  N
Sbjct: 20  DTALAEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGIKSIDGVEY---LNNLTQIN 74

Query: 280 ISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMF 339
            S N L    P    N+  L  + ++NNQ+    P  LA    +L  L L NN +     
Sbjct: 75  FSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LA-NLTNLTGLTLFNNQITD--I 127

Query: 340 SRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHI 399
               NLTNL  L+L  N        +LS  +SLQ L   N  ++   P  L NLT L  +
Sbjct: 128 DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQ-VTDLKP--LANLTTLERL 182

Query: 400 IMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKE 459
            +  N +     L   +L  L+ L  ++N IS  +        ++++ L+ N L      
Sbjct: 183 DISSNKVSDISVLA--KLTNLESLIATNNQIS-DITPLGILTNLDELSLNGNQLK---DI 236

Query: 460 GTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLL 519
           GT  +   L  LDL+ N ++   P  + GL++L+ L L  N +    P+    L  L  L
Sbjct: 237 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNL 292

Query: 520 DLSNNNLHG--HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFT 577
           +L+ N L     I +  + T L   +NN S + P                   L+   F 
Sbjct: 293 ELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS-------------SLTKLQRLFFY 339

Query: 578 TKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSN 637
              ++        + ++ L    N++    P  + NLT+I  L L+         +  +N
Sbjct: 340 NNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKAN 397

Query: 638 LRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGN 697
           +    ++      L    P  + +  +     + +N  S    E +  F+          
Sbjct: 398 VSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTT 454

Query: 698 PF 699
            F
Sbjct: 455 TF 456

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  130 bits (329), Expect = 2e-32
 Identities = 92/458 (20%), Positives = 168/458 (36%), Gaps = 62/458 (13%)

Query: 17  HFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQ 76
               +  L  D   I           E + ++  ++ SN+ +++ +      L  L  L 
Sbjct: 44  DLDQVTTLQADRLGIKSIDGV-----EYLNNLTQINFSNNQLTDIT-----PLKNLTKLV 93

Query: 77  ELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQI 136
           ++ M +N +    P  LAN+T+L  L + +NQ+       PL +LT++  L LS N    
Sbjct: 94  DILMNNNQIADITP--LANLTNLTGLTLFNNQIT---DIDPLKNLTNLNRLELSSNTIS- 147

Query: 137 PISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLY 196
              +  L   + L+     N   + + + + +       L+ L +SS     ++    L 
Sbjct: 148 --DISALSGLTSLQQLSFGNQVTDLKPLANLT------TLERLDISSNK---VSDISVLA 196

Query: 197 NQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVS 256
              +LE +  ++ ++++  P   L   T L +LSL  + L       + S   L  LD++
Sbjct: 197 KLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLA 251

Query: 257 KNNFQGHIPLE--------------IGDI-----LSRLTVFNISMNALDGSIPSSFGNMN 297
            N      PL               I +I     L+ LT   ++ N L+   P    N+ 
Sbjct: 252 NNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLK 309

Query: 298 FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNH 357
            L +L L  N ++   P         L+ L   NN +     S   NLTN+ WL    N 
Sbjct: 310 NLTYLTLYFNNISDISPVS---SLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ 364

Query: 358 FVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQL 417
                P  L+  + +  L L++ + +     +  N+++   +      +  P        
Sbjct: 365 ISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPA--TISDG 420

Query: 418 RILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHG 455
                 DI+ N  S +    Y F     +        G
Sbjct: 421 GSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSG 458

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.4 bits (160), Expect = 3e-11
 Identities = 58/303 (19%), Positives = 113/303 (37%), Gaps = 57/303 (18%)

Query: 13  QGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPL 72
                  +L EL ++  ++                          +          L  L
Sbjct: 215 TPLGILTNLDELSLNGNQL------------------------KDIGT--------LASL 242

Query: 73  VHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDN 132
            +L +L +A+N +    P  L+ +T L  L + +NQ+    + SPL  LT++ +L L++N
Sbjct: 243 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI---SNISPLAGLTALTNLELNEN 297

Query: 133 HFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFP 192
             +    + P+ N   L       N I+ +I    SLT    +LQ L   +   + ++  
Sbjct: 298 QLE---DISPISNLKNLTYLTLYFNNIS-DISPVSSLT----KLQRLFFYN---NKVSDV 346

Query: 193 KFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRL 252
             L N  ++ ++   H ++++  P   L N T++ QL L + +       P++    + +
Sbjct: 347 SSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTN---APVNYKANVSI 400

Query: 253 LDVSKNNFQGHI-PLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTG 311
            +  KN     I P  I D     T  +I+ N L           +    +       +G
Sbjct: 401 PNTVKNVTGALIAPATISD-GGSYTEPDITWN-LPSYTNEVSYTFSQPVTIGKGTTTFSG 458

Query: 312 EIP 314
            + 
Sbjct: 459 TVT 461

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  133 bits (336), Expect = 4e-34
 Identities = 74/390 (18%), Positives = 140/390 (35%), Gaps = 63/390 (16%)

Query: 291 SSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIW 350
               ++       L    +T  + +       S+  L ++   +          LTNL +
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVTQE---ELESITKLVVAGEKVAS--IQGIEYLTNLEY 70

Query: 351 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPI 410
           L L GN      P  LS    L  L++  N ++      L NLT LR + + +++I    
Sbjct: 71  LNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDIS 126

Query: 411 PLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLT-LM 469
           PL    L  +  L++  N+    L    +   +  + ++++    ++K+ T    LT L 
Sbjct: 127 PLA--NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES----KVKDVTPIANLTDLY 180

Query: 470 ILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGH 529
            L L+YN +    P  +  L+ L Y     N +    P  +  + +L  L + NN +   
Sbjct: 181 SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD- 235

Query: 530 IPSCFDNTTLHE---RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQ 586
           +    + + L       N  S +   +                                 
Sbjct: 236 LSPLANLSQLTWLEIGTNQISDINAVKDL------------------------------- 264

Query: 587 GRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDL 646
               + L  L++  N+ I  I   + NL+++ +L L++N L          L N+ +L L
Sbjct: 265 ----TKLKMLNVGSNQ-ISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318

Query: 647 SYNKLSWKIPYQLVELNTLAVFSVAYNNLS 676
           S N ++   P  L  L+ +     A   + 
Sbjct: 319 SQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  132 bits (334), Expect = 7e-34
 Identities = 83/379 (21%), Positives = 136/379 (35%), Gaps = 34/379 (8%)

Query: 53  LSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGS 112
            +  +              L       +    +   +      + S+  L V+  + + S
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEK-VAS 58

Query: 113 ISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTP 172
           I    + +LT++E L L+ N       + PL N  +L       N+I  +I    +LT  
Sbjct: 59  IQ--GIEYLTNLEYLNLNGNQIT---DISPLSNLVKLTNLYIGTNKIT-DISALQNLT-- 110

Query: 173 NFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLV 232
              L+ L L     D I+    L N   +  + L       +     L N T L  L++ 
Sbjct: 111 --NLRELYL---NEDNISDISPLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVT 163

Query: 233 NDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSS 292
              +      PI +   L  L ++ N  +   PL     L+ L  F   +N +    P  
Sbjct: 164 ESKVKDVT--PIANLTDLYSLSLNYNQIEDISPL---ASLTSLHYFTAYVNQITDITP-- 216

Query: 293 FGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQ 352
             NM  L  L + NN++T   P         L  L +  N +     +   +LT L  L 
Sbjct: 217 VANMTRLNSLKIGNNKITDLSPLA---NLSQLTWLEIGTNQISD--INAVKDLTKLKMLN 271

Query: 353 LEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPL 412
           +  N         L+  S L  LFL+NN L  +    +G LT L  + + +NHI    PL
Sbjct: 272 VGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPL 329

Query: 413 EFCQLRILQILDISDNNIS 431
               L  +   D ++  I 
Sbjct: 330 A--SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  128 bits (325), Expect = 1e-32
 Identities = 76/400 (19%), Positives = 154/400 (38%), Gaps = 59/400 (14%)

Query: 127 LILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYR 186
           L            + P  + +       +   +  +++    L      +  L+++    
Sbjct: 5   LATLPAPIN---QIFPDADLAEGIRAVLQKASVT-DVVTQEELE----SITKLVVAG--- 53

Query: 187 DGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHS 246
           + +   + +    +LEY+ L+  ++ +  P   L N  KL  L +  + +       + +
Sbjct: 54  EKVASIQGIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITDI--SALQN 108

Query: 247 HKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSN 306
              LR L ++++N     PL     L+++   N+  N    S  S   NM  L +L ++ 
Sbjct: 109 LTNLRELYLNEDNISDISPL---ANLTKMYSLNLGANHN-LSDLSPLSNMTGLNYLTVTE 164

Query: 307 NQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSL 366
           +++    P  +A     L SL+L+ N +E    S   +LT+L +     N      P  +
Sbjct: 165 SKVKDVTP--IA-NLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITP--V 217

Query: 367 SKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDIS 426
           +  + L  L + NN ++   P  L NL+ L  + +  N I     ++   L  L++L++ 
Sbjct: 218 ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVK--DLTKLKMLNVG 273

Query: 427 DNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV 486
            N IS  +                             N   L  L L+ N L     + +
Sbjct: 274 SNQIS-DISV-------------------------LNNLSQLNSLFLNNNQLGNEDMEVI 307

Query: 487 DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 526
            GL+ L+ L L+ N++    P+    L+++   D +N  +
Sbjct: 308 GGLTNLTTLFLSQNHITDIRPLA--SLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  124 bits (315), Expect = 2e-31
 Identities = 71/386 (18%), Positives = 133/386 (34%), Gaps = 63/386 (16%)

Query: 299 LQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHF 358
              L      +    P+             L   ++          L ++  L + G   
Sbjct: 2   AATLATLPAPINQIFPD---ADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKV 56

Query: 359 VGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLR 418
                Q +   ++L+ L L+ N ++   P  L NL  L ++ +  N I     L+   L 
Sbjct: 57  --ASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISALQ--NLT 110

Query: 419 ILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHL 478
            L+ L ++++NIS  +    +   +  ++L  N     L      N   L  L ++ + +
Sbjct: 111 NLRELYLNEDNIS-DISPLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKV 167

Query: 479 NGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN-- 536
               P  +  L+ L  L L +N +E   P  L  L  L       N +    P    N  
Sbjct: 168 KDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMT 221

Query: 537 --TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS 594
              +L    N  + L P                   L                     L+
Sbjct: 222 RLNSLKIGNNKITDLSPLAN----------------LSQ-------------------LT 246

Query: 595 GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK 654
            L++  N++       + +LTK++ LN+  N ++    S  +NL  + SL L+ N+L  +
Sbjct: 247 WLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNE 302

Query: 655 IPYQLVELNTLAVFSVAYNNLSGKIP 680
               +  L  L    ++ N+++   P
Sbjct: 303 DMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  124 bits (313), Expect = 4e-31
 Identities = 73/356 (20%), Positives = 131/356 (36%), Gaps = 29/356 (8%)

Query: 176 LQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDS 235
             +L       + I     L          L    + +       E    + +L +  + 
Sbjct: 2   AATLATLPAPINQIFPDADLAE---GIRAVLQKASVTDVVT---QEELESITKLVVAGEK 55

Query: 236 LVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGN 295
           +       I     L  L+++ N      PL     L +LT   I  N +  +  S+  N
Sbjct: 56  VASI--QGIEYLTNLEYLNLNGNQITDISPLSN---LVKLTNLYIGTNKI--TDISALQN 108

Query: 296 MNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEG 355
           +  L+ L L+ + ++   P  LA     + SL L  N+    + S   N+T L +L +  
Sbjct: 109 LTNLRELYLNEDNISDISP--LA-NLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTE 164

Query: 356 NHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFC 415
           +      P  ++  + L  L L+ N +    P  L +LT L +     N I    P+   
Sbjct: 165 SKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPV--A 218

Query: 416 QLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSY 475
            +  L  L I +N I+  L    +   +  + +  N +          +   L +L++  
Sbjct: 219 NMTRLNSLKIGNNKIT-DLSPLANLSQLTWLEIGTNQIS---DINAVKDLTKLKMLNVGS 274

Query: 476 NHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIP 531
           N ++      ++ LSQL+ L L +N L  E    +  L  L  L LS N++    P
Sbjct: 275 NQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  106 bits (268), Expect = 4e-25
 Identities = 67/330 (20%), Positives = 137/330 (41%), Gaps = 38/330 (11%)

Query: 7   NGVLSGQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLD 66
             V S QG  +  +L+ L ++  +I   +        ++  +  L +  + +++ S    
Sbjct: 54  EKVASIQGIEYLTNLEYLNLNGNQITDISPL-----SNLVKLTNLYIGTNKITDIS---- 104

Query: 67  QGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIED 126
             L  L +L+EL++ ++++    P  LAN+T +  L++ +N  +  +S  PL ++T +  
Sbjct: 105 -ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS--PLSNMTGLNY 159

Query: 127 LILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYR 186
           L ++++  +    + P+ N + L       N+I  +I    SLT     L          
Sbjct: 160 LTVTESKVK---DVTPIANLTDLYSLSLNYNQIE-DISPLASLT----SLHYFTAYV--- 208

Query: 187 DGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHS 246
           + IT    + N   L  +++ + K+ +  P   L N ++L  L +  + +       +  
Sbjct: 209 NQITDITPVANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISDIN--AVKD 263

Query: 247 HKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSN 306
             +L++L+V  N       L     LS+L    ++ N L        G +  L  L LS 
Sbjct: 264 LTKLKMLNVGSNQISDISVLNN---LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320

Query: 307 NQLTGEIP-EHLAMGCVSLRSLALSNNNLE 335
           N +T   P   L      + S   +N  ++
Sbjct: 321 NHITDIRPLASL----SKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  105 bits (265), Expect = 7e-25
 Identities = 85/377 (22%), Positives = 146/377 (38%), Gaps = 62/377 (16%)

Query: 7   NGVLSGQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLD 66
             V         +S+ +L +   ++    S   I  E + +++YL+L+ + +++ S    
Sbjct: 32  ASVTDVVTQEELESITKLVVAGEKV---ASIQGI--EYLTNLEYLNLNGNQITDIS---- 82

Query: 67  QGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIED 126
             L  LV L  L++  N +       L N+T+LR L ++ + +      SPL +LT +  
Sbjct: 83  -PLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNI---SDISPLANLTKMYS 136

Query: 127 LILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYR 186
           L L  N       L PL N + L       +++  ++    +LT     L SL L+    
Sbjct: 137 LNLGAN--HNLSDLSPLSNMTGLNYLTVTESKVK-DVTPIANLT----DLYSLSLN---- 185

Query: 187 DGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHS 246
                    YNQ       +  I          L + T L   +   + +      P+ +
Sbjct: 186 ---------YNQ-------IEDISP--------LASLTSLHYFTAYVNQITDI--TPVAN 219

Query: 247 HKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSN 306
             +L  L +  N      PL     LS+LT   I  N +  S  ++  ++  L+ L++ +
Sbjct: 220 MTRLNSLKIGNNKITDLSPLA---NLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGS 274

Query: 307 NQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSL 366
           NQ++      L      L SL L+NN L          LTNL  L L  NH     P  L
Sbjct: 275 NQISD--ISVLN-NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--L 329

Query: 367 SKCSSLQGLFLSNNSLS 383
           +  S +     +N  + 
Sbjct: 330 ASLSKMDSADFANQVIK 346

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  129 bits (325), Expect = 2e-32
 Identities = 64/338 (18%), Positives = 130/338 (38%), Gaps = 25/338 (7%)

Query: 220 LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFN 279
           L+ +     + +   +    F     +    +++    +  +  +P  + D   ++ + N
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 75

Query: 280 ISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLE---G 336
           ++   ++     +F   + +Q L +  N +   +P H+      L  L L  N+L     
Sbjct: 76  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPR 134

Query: 337 HMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVL 396
            +F    N   L  L +  N+       +    +SLQ L LS+N L+  +   L  +  L
Sbjct: 135 GIFH---NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSL 188

Query: 397 RHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQ 456
            H  +  N +             ++ LD S N+I+  +      V +  + L  N L   
Sbjct: 189 FHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG-PVNVELTILKLQHNNLT-- 239

Query: 457 LKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQL 516
                  N   L+ +DLSYN L   +      + +L  L +++N L   + +    +  L
Sbjct: 240 -DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTL 297

Query: 517 QLLDLSNNNLHGHIPSCFDNTTLHE---RYNNGSSLQP 551
           ++LDLS+N+L     +      L      +N+  +L+ 
Sbjct: 298 KVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL 335

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  124 bits (313), Expect = 9e-31
 Identities = 78/382 (20%), Positives = 129/382 (33%), Gaps = 62/382 (16%)

Query: 279 NISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL---E 335
           +I M   D         +N  + +   N+ +  ++P  L      +  L L++  +   +
Sbjct: 27  HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEID 85

Query: 336 GHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTV 395
            + F+       +  L +  N      P        L  L L  N LS        N   
Sbjct: 86  TYAFA---YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 142

Query: 396 LRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHG 455
           L  + M  N++E      F     LQ L +S N ++  +        +   ++S N+L  
Sbjct: 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL-SLIPSLFHANVSYNLLS- 199

Query: 456 QLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQ 515
                T    + +  LD S+N +N  +   V    +L+ L L HNNL  +    L     
Sbjct: 200 -----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT-DTA-WLLNYPG 249

Query: 516 LQLLDLSNNNLHGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQIL 571
           L  +DLS N L   +   F        L+   N                          L
Sbjct: 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-------------------------L 284

Query: 572 ESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPI 631
            + +   + I           L  LDLS N  + H+        +++ L L HN++    
Sbjct: 285 VALNLYGQPIPT---------LKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTLK 334

Query: 632 PSTFSNLRNIESLDLSYNKLSW 653
            ST   L+N   L LS+N    
Sbjct: 335 LSTHHTLKN---LTLSHNDWDC 353

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  118 bits (297), Expect = 9e-29
 Identities = 70/357 (19%), Positives = 139/357 (38%), Gaps = 26/357 (7%)

Query: 173 NFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLV 232
           +     + +    +D     + +   +  + V   +  M  + P  LL++  ++  L+L 
Sbjct: 20  DCVFYDVHIDMQTQDVYFGFEDITLNN-QKIVTFKNSTM-RKLPAALLDSFRQVELLNLN 77

Query: 233 NDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSS 292
           +  +             ++ L +  N  + ++P  +   +  LTV  +  N L       
Sbjct: 78  DLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGI 136

Query: 293 FGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQ 352
           F N   L  L +SNN L   I +       SL++L LS+N L     S    + +L    
Sbjct: 137 FHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLS---LIPSLFHAN 192

Query: 353 LEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPL 412
           +  N        +L+   +++ L  S+NS++  +         L  + +  N++      
Sbjct: 193 VSYNLL-----STLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLT-DTA- 242

Query: 413 EFCQLRILQILDISDNNISGSLP--SCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMI 470
                  L  +D+S N +   +          +E++++S N L             TL +
Sbjct: 243 WLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKV 299

Query: 471 LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 527
           LDLS+NHL  ++        +L  L L HN++     ++L   + L+ L LS+N+  
Sbjct: 300 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  112 bits (282), Expect = 8e-27
 Identities = 75/418 (17%), Positives = 145/418 (34%), Gaps = 58/418 (13%)

Query: 64  TLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTS 123
            +D  L       ++H+          +    + + +I+   ++  +  + ++ L     
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQ 70

Query: 124 IEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSS 183
           +E L L+D   +  I          ++      N I    +  H        L  L+L  
Sbjct: 71  VELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVP-LLTVLVLER 126

Query: 184 GYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLP 243
                        N        LS +      P  +  N  KL  LS+ N++L       
Sbjct: 127 -------------ND-------LSSL------PRGIFHNTPKLTTLSMSNNNLERIEDDT 160

Query: 244 IHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLD 303
             +   L+ L +S N    H+ L    ++  L   N+S N L     S+      ++ LD
Sbjct: 161 FQATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLL-----STLAIPIAVEELD 211

Query: 304 LSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIP 363
            S+N +   +   +    V L  L L +NNL     +   N   L+ + L  N     + 
Sbjct: 212 ASHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY 265

Query: 364 QSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQIL 423
               K   L+ L++SNN L   +  +   +  L+ + +  NH+   +     Q   L+ L
Sbjct: 266 HPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENL 323

Query: 424 DISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGN 481
            +  N+I  +L        ++ + LS N            N L  +  +++   ++  
Sbjct: 324 YLDHNSIV-TLKL-STHHTLKNLTLSHNDWD--------CNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  110 bits (278), Expect = 2e-26
 Identities = 61/365 (16%), Positives = 116/365 (31%), Gaps = 70/365 (19%)

Query: 323 SLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSL 382
               + +     + +    +  L N   +  + +         L     ++ L L++  +
Sbjct: 22  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 81

Query: 383 SGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVC 442
                        ++ + M  N I    P  F  + +L +L +  N++S           
Sbjct: 82  EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS----------- 130

Query: 443 IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNN 501
                         L  G F N   L  L +S N+L   I D      + L  L L+ N 
Sbjct: 131 -------------SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNR 176

Query: 502 LEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGG 561
           L     + L  +  L   ++S N L   +        L   +N+ + ++           
Sbjct: 177 LTH---VDLSLIPSLFHANVSYNLLS-TLAIPIAVEELDASHNSINVVRG---------- 222

Query: 562 MDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLN 621
                                      V   L+ L L  N L       + N   +  ++
Sbjct: 223 --------------------------PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVD 254

Query: 622 LSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE 681
           LS+N L   +   F  ++ +E L +S N+L   +      + TL V  +++N+L   +  
Sbjct: 255 LSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVER 312

Query: 682 RAAQF 686
              QF
Sbjct: 313 NQPQF 317

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  108 bits (273), Expect = 1e-25
 Identities = 73/424 (17%), Positives = 147/424 (34%), Gaps = 63/424 (14%)

Query: 15  FPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQG-LCPLV 73
             +     ++++D     +   F  I   ++ + + ++  N    +  R L    L    
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDI---TLNNQKIVTFKN----STMRKLPAALLDSFR 69

Query: 74  HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNH 133
            ++ L++ D  +     +  A   +++ L +  N  I  +      ++  +  L+L  N 
Sbjct: 70  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERND 128

Query: 134 FQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPK 193
               +      N  +L      NN +  E IE  +       LQ+L LS           
Sbjct: 129 LSS-LPRGIFHNTPKLTTLSMSNNNL--ERIEDDTF-QATTSLQNLQLS----------- 173

Query: 194 FLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLL 253
              N+       L+H+          L     L   ++  + L       +     +  L
Sbjct: 174 --SNR-------LTHVD---------LSLIPSLFHANVSYNLLST-----LAIPIAVEEL 210

Query: 254 DVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEI 313
           D S N+    +    G +   LT+  +  N L  +  +   N   L  +DLS N+L  +I
Sbjct: 211 DASHNSIN-VVR---GPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELE-KI 263

Query: 314 PEHLAMGCVSLRSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEIPQSLSKCSSL 372
             H  +    L  L +SNN L     +     +  L  L L  NH +  + ++  +   L
Sbjct: 264 MYHPFVKMQRLERLYISNNRLV--ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 320

Query: 373 QGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISG 432
           + L+L +NS+   +   L     L+++ +  N  +          R +    + D +   
Sbjct: 321 ENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHC 375

Query: 433 SLPS 436
            +  
Sbjct: 376 KIDY 379

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 26/132 (19%), Positives = 59/132 (44%), Gaps = 12/132 (9%)

Query: 10  LSGQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGL 69
           +    F   + L+ LY+ + R+      L + G+ +P+++ L LS+    N+   +++  
Sbjct: 263 IMYHPFVKMQRLERLYISNNRL----VALNLYGQPIPTLKVLDLSH----NHLLHVERNQ 314

Query: 70  CPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLIL 129
                L+ L++  N +  +L   L+   +L+ L +S N    +   +   ++     +  
Sbjct: 315 PQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARP-AVDD 370

Query: 130 SDNHFQIPISLE 141
           +D H +I   LE
Sbjct: 371 ADQHCKIDYQLE 382

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  129 bits (326), Expect = 7e-32
 Identities = 70/292 (23%), Positives = 127/292 (43%), Gaps = 12/292 (4%)

Query: 241 RLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQ 300
            +P     + RLLD+ KN  +  +  +       L    ++ N +    P +F N+  L+
Sbjct: 25  AVPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83

Query: 301 FLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL---EGHMFSRNFNLTNLIWLQLEGNH 357
            L L +N+L   IP  +  G  +L  L +S N +     +MF    +L NL  L++  N 
Sbjct: 84  TLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQ---DLYNLKSLEVGDND 139

Query: 358 FVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQL 417
            V    ++ S  +SL+ L L   +L+      L +L  L  + +   +I       F +L
Sbjct: 140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL 199

Query: 418 RILQILDISDNNISGSL-PSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYN 476
             L++L+IS      ++ P+C   + +  + ++   L   +      + + L  L+LSYN
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYN 258

Query: 477 HLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 527
            ++  I   +   L +L  + L    L    P     LN L++L++S N L 
Sbjct: 259 PIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  123 bits (311), Expect = 5e-30
 Identities = 72/384 (18%), Positives = 126/384 (32%), Gaps = 75/384 (19%)

Query: 302 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN---LEGHMFSRNFNLTNLIWLQLEGNHF 358
           +     +    +PE +       R L L  N    L    F+   +  +L  L+L  N  
Sbjct: 16  VLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFA---SFPHLEELELNENIV 68

Query: 359 VGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLR 418
               P + +   +L+ L L +N L          L+ L  + + +N I   +   F  L 
Sbjct: 69  SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128

Query: 419 ILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHL 478
            L+ L++ DN++                          +    F    +L  L L   +L
Sbjct: 129 NLKSLEVGDNDLV------------------------YISHRAFSGLNSLEQLTLEKCNL 164

Query: 479 NGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI-PSCFDN 536
             +IP      L  L  L L H N+         RL +L++L++S+      + P+C   
Sbjct: 165 T-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223

Query: 537 TTLHE---RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLL 593
             L      + N +++                       +                   L
Sbjct: 224 LNLTSLSITHCNLTAVPY--------------------LAVRHLVY-------------L 250

Query: 594 SGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 652
             L+LS N  I  I   +   L ++Q + L    LA   P  F  L  +  L++S N+L+
Sbjct: 251 RFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

Query: 653 WKIPYQLVELNTLAVFSVAYNNLS 676
                    +  L    +  N L+
Sbjct: 310 TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  122 bits (309), Expect = 8e-30
 Identities = 56/286 (19%), Positives = 108/286 (37%), Gaps = 14/286 (4%)

Query: 248 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNN 307
             L  L++++N     +     + L  L    +  N L       F  ++ L  LD+S N
Sbjct: 56  PHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114

Query: 308 QLTGEIPEHLAMGCVSLRSLALSNNNL---EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ 364
           ++   + +++     +L+SL + +N+L       FS    L +L  L LE  +      +
Sbjct: 115 KIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS---GLNSLEQLTLEKCNLTSIPTE 170

Query: 365 SLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILD 424
           +LS    L  L L + +++         L  L+ + +        +         L  L 
Sbjct: 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230

Query: 425 ISDNNISGSLPS--CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNI 482
           I+  N++ ++P       V +  ++LS N +   ++       L L  + L    L   +
Sbjct: 231 ITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLA-VV 287

Query: 483 PDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 527
                 GL+ L  L ++ N L          +  L+ L L +N L 
Sbjct: 288 EPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  107 bits (269), Expect = 1e-24
 Identities = 60/329 (18%), Positives = 106/329 (32%), Gaps = 68/329 (20%)

Query: 361 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 420
            +P+ +   +  + L L  N +         +   L  + + +N +    P  F  L  L
Sbjct: 25  AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82

Query: 421 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG 480
           + L +  N +                          +  G F     L  LD+S N +  
Sbjct: 83  RTLGLRSNRLK------------------------LIPLGVFTGLSNLTKLDISENKIV- 117

Query: 481 NIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPS-CFDN-- 536
            + D +   L  L  L +  N+L          LN L+ L L   NL   IP+    +  
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLH 176

Query: 537 --TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS 594
               L  R+ N ++++                      SF    +             L 
Sbjct: 177 GLIVLRLRHLNINAIRD--------------------YSFKRLYR-------------LK 203

Query: 595 GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK 654
            L++S    +  + P       + +L+++H NL         +L  +  L+LSYN +S  
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI 263

Query: 655 IPYQLVELNTLAVFSVAYNNLSGKIPERA 683
               L EL  L    +    L+  +   A
Sbjct: 264 EGSMLHELLRLQEIQLVGGQLA-VVEPYA 291

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  103 bits (259), Expect = 2e-23
 Identities = 61/360 (16%), Positives = 125/360 (34%), Gaps = 60/360 (16%)

Query: 97  TSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAEN 156
           T  R+LD+  N+ I +++         +E+L L++N     +      N   L+     +
Sbjct: 32  TETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIVSA-VEPGAFNNLFNLRTLGLRS 89

Query: 157 NEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFP 216
           N +  ++I     T  +  L  L +S              N+       +  +       
Sbjct: 90  NRL--KLIPLGVFTGLS-NLTKLDIS-------------ENK-------IVIL------L 120

Query: 217 NWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLT 276
           +++ ++   L+ L + ++                 L+ +S   F G         L+ L 
Sbjct: 121 DYMFQDLYNLKSLEVGDN----------------DLVYISHRAFSG---------LNSLE 155

Query: 277 VFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG 336
              +    L      +  +++ L  L L +  +   I ++       L+ L +S+     
Sbjct: 156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLD 214

Query: 337 HMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVL 396
            M        NL  L +   +       ++     L+ L LS N +S      L  L  L
Sbjct: 215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274

Query: 397 RHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLP--SCYDFVCIEQVHLSKNMLH 454
           + I +    +    P  F  L  L++L++S N ++ +L     +    +E + L  N L 
Sbjct: 275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  101 bits (254), Expect = 9e-23
 Identities = 60/316 (18%), Positives = 123/316 (38%), Gaps = 21/316 (6%)

Query: 74  HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNH 133
             + L +  N ++       A+   L  L+++ N  + ++      +L ++  L L  N 
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 134 FQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITF-- 191
            ++ I L      S L   D   N+I   I+  +      + L+SL +     + + +  
Sbjct: 92  LKL-IPLGVFTGLSNLTKLDISENKI--VILLDYMF-QDLYNLKSLEVG---DNDLVYIS 144

Query: 192 PKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLR 251
            +     + LE + L    +    P   L +   L  L L + ++            +L+
Sbjct: 145 HRAFSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203

Query: 252 LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPS-SFGNMNFLQFLDLSNNQLT 310
           +L++S   +   +       L+ LT  +I+   L  ++P  +  ++ +L+FL+LS N ++
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLN-LTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS 261

Query: 311 GEIPEHLAMGCVSLRSLALSNNNL---EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLS 367
             I   +    + L+ + L    L   E + F     L  L  L + GN           
Sbjct: 262 -TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR---GLNYLRVLNVSGNQLTTLEESVFH 317

Query: 368 KCSSLQGLFLSNNSLS 383
              +L+ L L +N L+
Sbjct: 318 SVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 93.6 bits (233), Expect = 3e-20
 Identities = 70/329 (21%), Positives = 133/329 (40%), Gaps = 45/329 (13%)

Query: 9   VLSGQGFPHFKSLKELYMDDARIAL--NTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLD 66
            L+   F  F  L+EL +++  ++     +F      ++ +++ L L +    N  + + 
Sbjct: 46  TLNQDEFASFPHLEELELNENIVSAVEPGAF-----NNLFNLRTLGLRS----NRLKLIP 96

Query: 67  QG-LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIE 125
            G    L +L +L +++N +   L +   ++ +L+ L+V  N  +  IS      L S+E
Sbjct: 97  LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLE 155

Query: 126 DLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGY 185
            L L   +    I  E L +   L +    +  INA  I  +S     ++L+ L +S   
Sbjct: 156 QLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINA--IRDYSF-KRLYRLKVLEISHWP 211

Query: 186 RDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIH 245
                 P  LY  + L  + ++H  +    P   + +   LR L+L              
Sbjct: 212 YLDTMTPNCLYGLN-LTSLSITHCNL-TAVPYLAVRHLVYLRFLNL-------------- 255

Query: 246 SHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLS 305
           S+  +    +  +             L RL    +    L    P +F  +N+L+ L++S
Sbjct: 256 SYNPIS--TIEGSMLHE---------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304

Query: 306 NNQLTGEIPEHLAMGCVSLRSLALSNNNL 334
            NQLT  + E +     +L +L L +N L
Sbjct: 305 GNQLT-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.1 bits (159), Expect = 4e-11
 Identities = 35/231 (15%), Positives = 85/231 (36%), Gaps = 17/231 (7%)

Query: 9   VLSGQGFPHFKSLKELYMDDARIA-LNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQ 67
           +L    F    +LK L + D  +  ++          + S++ L+L       N  ++  
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS----GLNSLEQLTLEK----CNLTSIPT 169

Query: 68  G-LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIED 126
             L  L  L  L +   ++     +    +  L++L++S    + +++ +  ++  ++  
Sbjct: 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN-CLYGLNLTS 228

Query: 127 LILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYR 186
           L ++  +    +    + +   L+  +   N I    IE   L     +LQ + L  G  
Sbjct: 229 LSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPI--STIEGSML-HELLRLQEIQLVGGQL 284

Query: 187 DGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLV 237
             +  P      + L  + +S  ++       +  +   L  L L ++ L 
Sbjct: 285 AVVE-PYAFRGLNYLRVLNVSGNQL-TTLEESVFHSVGNLETLILDSNPLA 333

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  120 bits (303), Expect = 4e-29
 Identities = 92/477 (19%), Positives = 161/477 (33%), Gaps = 97/477 (20%)

Query: 222 NNTKLRQLSLVNDSLVGPFRLP--IHSHKQLRLLDVSKNNFQGHIPLEIGDILS------ 273
           +NT L++    + +L     +P    + K       + + ++ + P   G+         
Sbjct: 9   SNTFLQEPLRHSSNLT---EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 274 ------RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSL 327
                 +     ++   L  S+P    +   L+ L  S N LT E+PE       SL   
Sbjct: 66  RDCLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQ-SLKSLLVD 119

Query: 328 ALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIP 387
             +   L             L +L +  N    ++P  L   S L+ + + NNSL  K+P
Sbjct: 120 NNNLKALSD-------LPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLP 169

Query: 388 RWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVH 447
               +L  +       N +E  +P E   L  L  +   +N++   LP     + +E + 
Sbjct: 170 DLPPSLEFIA---AGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPDL--PLSLESIV 221

Query: 448 LSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP 507
              N+L  +L E    N   L  +    N L   +PD       L  L +  N L  ++P
Sbjct: 222 AGNNILE-ELPE--LQNLPFLTTIYADNNLLK-TLPD---LPPSLEALNVRDNYLT-DLP 273

Query: 508 IQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPK 567
                L  L + +   + L    P+      L+   N   SL     S            
Sbjct: 274 ELPQSLTFLDVSENIFSGLSELPPNL---YYLNASSNEIRSLCDLPPS------------ 318

Query: 568 KQILESFDFTTKSITYTYQGRVPSLLSGL---DLSCNRLIGHIPPQIGNLTKIQTLNLSH 624
              LE  + +   +       +P+L   L     S N L   +P    NL +   L++ +
Sbjct: 319 ---LEELNVSNNKLI-----ELPALPPRLERLIASFNHL-AEVPELPQNLKQ---LHVEY 366

Query: 625 NNLAGPIPSTFSNLR----------------NIESLDLSYNKLSWKIPYQLVELNTL 665
           N L    P    ++                 N++ L +  N L  + P     +  L
Sbjct: 367 NPLRE-FPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVEDL 421

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  120 bits (303), Expect = 4e-29
 Identities = 94/581 (16%), Positives = 176/581 (30%), Gaps = 137/581 (23%)

Query: 72  LVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSD 131
              LQE     ++L   +P    N+ S      + ++   +           +    L D
Sbjct: 10  NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRD 67

Query: 132 NHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITF 191
                           +    +  N  ++                             + 
Sbjct: 68  C------------LDRQAHELELNNLGLS-----------------------------SL 86

Query: 192 PKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLR 251
           P+   +   LE +  S   +  E P         L+ L + N++L     LP      L 
Sbjct: 87  PELPPH---LESLVASCNSL-TELPELP----QSLKSLLVDNNNLKALSDLP----PLLE 134

Query: 252 LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTG 311
            L VS N  +  +P E+ +  S L + ++  N+L   +P    +   L+F+   NNQL  
Sbjct: 135 YLGVSNNQLE-KLP-ELQN-SSFLKIIDVDNNSLK-KLPDLPPS---LEFIAAGNNQLE- 186

Query: 312 EIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSS 371
           E+PE        L ++   NN+L+           +L  +    N    E    L     
Sbjct: 187 ELPEL--QNLPFLTAIYADNNSLK----KLPDLPLSLESIVAGNNIL--EELPELQNLPF 238

Query: 372 LQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS 431
           L  ++  NN L   +P    +L  L    +  N++   +P     L  L + +   + +S
Sbjct: 239 LTTIYADNNLLK-TLPDLPPSLEALN---VRDNYLTD-LPELPQSLTFLDVSENIFSGLS 293

Query: 432 GSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQ 491
              P+      +  ++ S N +             +L  L++S N L   +P       +
Sbjct: 294 ELPPN------LYYLNASSNEI-----RSLCDLPPSLEELNVSNNKLI-ELPA---LPPR 338

Query: 492 LSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQP 551
           L  LI + N+L  EVP        L+ L +  N L    P   ++       ++ + +  
Sbjct: 339 LERLIASFNHLA-EVPELPQ---NLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPE 393

Query: 552 FETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI 611
                                                 P  L  L +  N L    P   
Sbjct: 394 L-------------------------------------PQNLKQLHVETNPLR-EFPDIP 415

Query: 612 GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 652
            ++     L ++   +  P          +E     ++   
Sbjct: 416 ESVED---LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  112 bits (283), Expect = 1e-26
 Identities = 90/471 (19%), Positives = 151/471 (32%), Gaps = 104/471 (22%)

Query: 223 NTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISM 282
           + +  +L L N  L     LP      L  L  S N+    +P      L  L V N ++
Sbjct: 70  DRQAHELELNNLGLS---SLP-ELPPHLESLVASCNSLT-ELPELPQS-LKSLLVDNNNL 123

Query: 283 NALDGSIPS---------------SFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSL 327
            AL    P                   N +FL+ +D+ NN L  ++P+       SL  +
Sbjct: 124 KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPP----SLEFI 178

Query: 328 ALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIP 387
           A  NN LE        NL  L  +  + N    ++P       SL+ +   NN L     
Sbjct: 179 AAGNNQLEE--LPELQNLPFLTAIYADNNSLK-KLPDLPL---SLESIVAGNNILE--EL 230

Query: 388 RWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVH 447
             L NL  L  I    N ++  +P     L  L + D    ++     S      ++   
Sbjct: 231 PELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTF---LDVSE 286

Query: 448 LSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP 507
              + L              L  L+ S N +  ++ D       L  L +++N L  E+P
Sbjct: 287 NIFSGLSELPPN--------LYYLNASSNEIR-SLCDL---PPSLEELNVSNNKLI-ELP 333

Query: 508 IQLCRLNQLQLLDLSNNNLHGHIPSCFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDP 566
                  +L+ L  S N+L   +P    N   LH  YN                      
Sbjct: 334 ALPP---RLERLIASFNHLA-EVPELPQNLKQLHVEYNPLREF----------------- 372

Query: 567 KKQILESFDFTTKSITYTYQGRVPSLLSGL-DLSCNRLIGHIPPQIGNLTKIQTLNLSHN 625
                                  P +   + DL  N  +  +P    NL   + L++  N
Sbjct: 373 -----------------------PDIPESVEDLRMNSHLAEVPELPQNL---KQLHVETN 406

Query: 626 NLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 676
            L    P    ++ +   L ++  ++     +     + L      +++  
Sbjct: 407 PLRE-FPDIPESVED---LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  112 bits (281), Expect = 3e-26
 Identities = 96/495 (19%), Positives = 162/495 (32%), Gaps = 99/495 (20%)

Query: 33  LNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWC 92
              +  ++          L L+N        +L +      HL+ L  + N L   LP  
Sbjct: 58  REMAVSRLRDCLDRQAHELELNN----LGLSSLPELPP---HLESLVASCNSLT-ELPEL 109

Query: 93  LANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIF 152
             ++ SL + + +   L              +E L +S+N  +    L  L N S LKI 
Sbjct: 110 PQSLKSLLVDNNNLKALSDLPPL--------LEYLGVSNNQLE---KLPELQNSSFLKII 158

Query: 153 DAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMN 212
           D +NN +                                P    +   LE++   + ++ 
Sbjct: 159 DVDNNSLK-----------------------------KLPDLPPS---LEFIAAGNNQL- 185

Query: 213 EEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDIL 272
           EE P   L+N   L  +   N+SL     LP      L  +    N        E+ + L
Sbjct: 186 EELPE--LQNLPFLTAIYADNNSLKKLPDLP----LSLESIVAGNNIL--EELPELQN-L 236

Query: 273 SRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN 332
             LT      N L  ++P    +   L+ L++ +N LT ++PE       SL  L +S N
Sbjct: 237 PFLTTIYADNNLL-KTLPDLPPS---LEALNVRDNYLT-DLPELPQ----SLTFLDVSEN 287

Query: 333 NLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGN 392
                    +    NL +L    N     +        SL+ L +SNN L  ++P     
Sbjct: 288 IFS----GLSELPPNLYYLNASSNEIR-SLCDLPP---SLEELNVSNNKLI-ELPALPPR 338

Query: 393 LTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNM 452
           L  L   I   NH+   +P     L+ L    +  N +    P            +    
Sbjct: 339 LERL---IASFNHLAE-VPELPQNLKQL---HVEYNPLR-EFPD-------IPESVEDLR 383

Query: 453 LHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCR 512
           ++  L E        L  L +  N L    PD       +  L +    +          
Sbjct: 384 MNSHLAEVPEL-PQNLKQLHVETNPLR-EFPD---IPESVEDLRMNSERVVDPYEFAHET 438

Query: 513 LNQLQLLDLSNNNLH 527
            ++L+     +++ H
Sbjct: 439 TDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  111 bits (279), Expect = 5e-26
 Identities = 90/437 (20%), Positives = 152/437 (34%), Gaps = 92/437 (21%)

Query: 246 SHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLS 305
           S+  L+      +N    +P+E  + +   T +  + +  + + P   G    +    L 
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 306 NNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQS 365
           +                    L L+N  L     S      +L  L    N    E+P+ 
Sbjct: 67  DCLDR------------QAHELELNNLGLS----SLPELPPHLESLVASCNSLT-ELPEL 109

Query: 366 LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI 425
                SL     +  +LS   P        L ++ +  N +E  +P E      L+I+D+
Sbjct: 110 PQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLEK-LP-ELQNSSFLKIIDV 160

Query: 426 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDR 485
            +N++   LP       +E +    N L  +L E    N   L  +    N L   +PD 
Sbjct: 161 DNNSLK-KLPDL--PPSLEFIAAGNNQLE-ELPE--LQNLPFLTAIYADNNSLK-KLPD- 212

Query: 486 VDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN-TTLHERYN 544
                 L  ++  +N LE E+P +L  L  L  +   NN L   +P    +   L+ R N
Sbjct: 213 --LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDN 267

Query: 545 NGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLI 604
             + L                                       +P  L+ LD+S N   
Sbjct: 268 YLTDLPE-------------------------------------LPQSLTFLDVSENIFS 290

Query: 605 GHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNT 664
             +     NL     LN S N     I S      ++E L++S NKL  ++P     L  
Sbjct: 291 -GLSELPPNLYY---LNASSNE----IRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER 341

Query: 665 LAVFSVAYNNLSGKIPE 681
           L     ++N+L+ ++PE
Sbjct: 342 L---IASFNHLA-EVPE 354

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 93.9 bits (234), Expect = 2e-20
 Identities = 67/345 (19%), Positives = 124/345 (35%), Gaps = 56/345 (16%)

Query: 341 RNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHII 400
           RN + T L       ++   E+P       S    + + +      P   G    +    
Sbjct: 6   RNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 401 MPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEG 460
           +             C  R    L++++  +S SLP       +E +  S N L  +L E 
Sbjct: 65  LRD-----------CLDRQAHELELNNLGLS-SLPE--LPPHLESLVASCNSLT-ELPEL 109

Query: 461 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLD 520
              +  +L++ + +   L+   P        L YL +++N LE ++P +L   + L+++D
Sbjct: 110 -PQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLP-ELQNSSFLKIID 159

Query: 521 LSNNNLHGHIPSCFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTK 579
           + NN+L   +P    +   +    N    L                     L +      
Sbjct: 160 VDNNSLK-KLPDLPPSLEFIAAGNNQLEELPEL-------------QNLPFLTAIYADNN 205

Query: 580 SITYTYQGRVPSLLSGL---DLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFS 636
           S+      ++P L   L       N L     P++ NL  + T+   +N L   +P    
Sbjct: 206 SLK-----KLPDLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLKT-LPDLPP 257

Query: 637 NLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE 681
           +L   E+L++  N L+  +P     L  L V    ++ LS   P 
Sbjct: 258 SL---EALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPN 298

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  116 bits (293), Expect = 8e-28
 Identities = 88/436 (20%), Positives = 143/436 (32%), Gaps = 75/436 (17%)

Query: 288 SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF-NLT 346
            +P+       + ++DLS N +  E+ E        L+ L +        + +  F  L+
Sbjct: 27  ELPAH------VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79

Query: 347 NLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSL-SGKIPR-WLGNLTVLRHIIMPKN 404
           +LI L+L+ N F+     + +  ++L+ L L+  +L    +   +   LT L  +++  N
Sbjct: 80  SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 405 HIEGPIPLE-FCQLRILQILDISDNNISGSLPSCYDFVCIEQV---HLSKNMLH------ 454
           +I+   P   F  +R   +LD++ N +             +      LS   L       
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199

Query: 455 -GQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRL 513
            G  K G  F   ++  LDLS N    ++  R       + +     +            
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN---SYNMGSSF 256

Query: 514 NQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILES 573
                 D  N    G   S     T     +   +L                        
Sbjct: 257 GHTNFKDPDNFTFKGLEAS--GVKTCDLSKSKIFALLK--------------------SV 294

Query: 574 FDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIP 632
           F   T              L  L L+ N  I  I       LT +  LNLS N L     
Sbjct: 295 FSHFTD-------------LEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340

Query: 633 STFSNLRNIESLDLSYNKLSWKIPYQ----LVELNTLAVFSVAYNNLSGKIPERAAQFAT 688
             F NL  +E LDLSYN +   +  Q    L  L  L   ++  N L   +P+    F  
Sbjct: 341 RMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKEL---ALDTNQLK-SVPDGI--FDR 393

Query: 689 FNESSY---EGNPFLC 701
                      NP+ C
Sbjct: 394 LTSLQKIWLHTNPWDC 409

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 99.8 bits (249), Expect = 3e-22
 Identities = 86/463 (18%), Positives = 147/463 (31%), Gaps = 92/463 (19%)

Query: 73  VHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDN 132
            H+  + ++ N +        + +  L+ L V        I ++    L+S+  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 133 HFQIPISLEP-LFNH-SRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGIT 190
            F     LE   FN  + L++                        L   +LS  +   +T
Sbjct: 90  QFL---QLETGAFNGLANLEVLTLTQC-----------------NLDGAVLSGNFFKPLT 129

Query: 191 FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL 250
                     LE + L    + +  P     N  +   L L  + +     +        
Sbjct: 130 ---------SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK---SICEEDLLNF 177

Query: 251 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLT 310
           +    +               LS +T+ +++   L      +      +  LDLS N   
Sbjct: 178 QGKHFTLLR------------LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225

Query: 311 GEIPEHL--AMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSK 368
             + +    A+    ++SL LSN+   G  F          +   +   F G       +
Sbjct: 226 ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT------NFKDPDNFTFKG------LE 273

Query: 369 CSSLQGLFLSNN---SLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI 425
            S ++   LS +   +L   +     +L  L    + +N I       F  L  L  L++
Sbjct: 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLT---LAQNEINKIDDNAFWGLTHLLKLNL 330

Query: 426 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDR 485
           S N +  S+                           F N   L +LDLSYNH+   + D+
Sbjct: 331 SQNFLG-SID-----------------------SRMFENLDKLEVLDLSYNHI-RALGDQ 365

Query: 486 V-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 527
              GL  L  L L  N L+        RL  LQ + L  N   
Sbjct: 366 SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 95.2 bits (237), Expect = 8e-21
 Identities = 74/390 (18%), Positives = 131/390 (33%), Gaps = 45/390 (11%)

Query: 46  PSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPW-CLANMTSLRILD 103
             + Y+ LS     N+   L++     L  LQ L +        +       ++SL IL 
Sbjct: 30  AHVNYVDLSL----NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK 85

Query: 104 VSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNH-SRLKIFDAENNEINAE 162
           +  NQ    + +     L ++E L L+  +    +     F   + L++    +N I  +
Sbjct: 86  LDYNQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI--K 142

Query: 163 IIESHSLTTPNFQLQSLLLS--------SGYRDGITFPKFLYNQHDLEYVRLSHIKMNEE 214
            I+  S      +   L L+                   F   +     ++  +      
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW 202

Query: 215 FPNWLLENNTKLRQLSLVN-----------DSLVGPFRLP--IHSHKQLRLLDVSKNNFQ 261
                   NT +  L L                +   ++   I S+           NF+
Sbjct: 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262

Query: 262 GHIPLE-IGDILSRLTVFNISMNALDGSIPS-SFGNMNFLQFLDLSNNQLTGEIPEHLAM 319
                   G   S +   ++S + +  ++    F +   L+ L L+ N++  +I ++   
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKI-FALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFW 320

Query: 320 GCVSLRSLALSNNNL---EGHMFSRNFNLTNLIWLQLEGNHFVGEIP-QSLSKCSSLQGL 375
           G   L  L LS N L   +  MF    NL  L  L L  NH    +  QS     +L+ L
Sbjct: 321 GLTHLLKLNLSQNFLGSIDSRMFE---NLDKLEVLDLSYNHI-RALGDQSFLGLPNLKEL 376

Query: 376 FLSNNSLSGKIPR-WLGNLTVLRHIIMPKN 404
            L  N L   +P      LT L+ I +  N
Sbjct: 377 ALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 69/360 (19%), Positives = 114/360 (31%), Gaps = 93/360 (25%)

Query: 15  FPHFKSLKELYMDD---ARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCP 71
           F    SL+ L + D    +I   + F      +M     L L+ + V +           
Sbjct: 125 FKPLTSLEMLVLRDNNIKKIQPASFF-----LNMRRFHVLDLTFNKVKSICEEDLLNFQG 179

Query: 72  LVHLQELHMADNDLRGSLPW---------CLANMTSLRILDVSSNQLIGSISSSPLIHLT 122
             H   L ++   L+  +                TS+  LD+S N    S++      + 
Sbjct: 180 K-HFTLLRLSSITLQ-DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIA 237

Query: 123 SIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLS 182
             +   L  ++     S     N                           NF  + L  S
Sbjct: 238 GTKIQSLILSNSYNMGSSFGHTNFKDP----------------------DNFTFKGLEAS 275

Query: 183 SGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRL 242
                             ++   LS  K+       +  + T L QL+L           
Sbjct: 276 G-----------------VKTCDLSKSKIF-ALLKSVFSHFTDLEQLTL----------- 306

Query: 243 PIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPS-SFGNMNFLQF 301
                        ++N     I       L+ L   N+S N L GSI S  F N++ L+ 
Sbjct: 307 -------------AQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEV 351

Query: 302 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLE---GHMFSRNFNLTNLIWLQLEGNHF 358
           LDLS N +   + +   +G  +L+ LAL  N L+     +F     LT+L  + L  N +
Sbjct: 352 LDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFD---RLTSLQKIWLHTNPW 407

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  118 bits (296), Expect = 1e-27
 Identities = 76/432 (17%), Positives = 138/432 (31%), Gaps = 80/432 (18%)

Query: 279 NISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN---NLE 335
           +I M   D         +N  + +   N+ +  ++P  L      +  L L++     ++
Sbjct: 33  HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEID 91

Query: 336 GHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTV 395
            + F+       +  L +  N      P        L  L L  N LS        N   
Sbjct: 92  TYAFA---YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 148

Query: 396 LRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHG 455
           L  + M  N++E      F     LQ L +S N ++  +        +   ++S N+L  
Sbjct: 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL-SLIPSLFHANVSYNLLS- 205

Query: 456 QLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQ 515
                T    + +  LD S+N +N  +   V    +L+ L L HNNL  +    L     
Sbjct: 206 -----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT-DTA-WLLNYPG 255

Query: 516 LQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFD 575
           L  +DLS                    YN    +                        F 
Sbjct: 256 LVEVDLS--------------------YNELEKIMY--------------------HPFV 275

Query: 576 FTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTF 635
              +             L  L +S NR +  +      +  ++ L+LSHN+L   +    
Sbjct: 276 KMQR-------------LERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLLH-VERNQ 320

Query: 636 SNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYE 695
                +E+L L +N +   +       +TL   ++++N+         A F      + +
Sbjct: 321 PQFDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWDC--NSLRALFRNVARPAVD 375

Query: 696 GNPFLCGPPLPI 707
                C     +
Sbjct: 376 DADQHCKIDYQL 387

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  109 bits (274), Expect = 5e-25
 Identities = 75/419 (17%), Positives = 146/419 (34%), Gaps = 58/419 (13%)

Query: 63  RTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLT 122
           + +D  L       ++H+          +    + + +I+   ++  +  + ++ L    
Sbjct: 17  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFR 75

Query: 123 SIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLS 182
            +E L L+D   +  I          ++      N I    +  H        L  L+L 
Sbjct: 76  QVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAI--RYLPPHVF-QNVPLLTVLVLE 131

Query: 183 SGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRL 242
                         N        LS +      P  +  N  KL  LS+ N++L      
Sbjct: 132 -------------RND-------LSSL------PRGIFHNTPKLTTLSMSNNNLERIEDD 165

Query: 243 PIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFL 302
              +   L+ L +S N    H+ L    ++  L   N+S N L     S+      ++ L
Sbjct: 166 TFQATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLL-----STLAIPIAVEEL 216

Query: 303 DLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEI 362
           D S+N +   +   +    V L  L L +NNL     +   N   L+ + L  N     +
Sbjct: 217 DASHNSIN-VVRGPV---NVELTILKLQHNNLT--DTAWLLNYPGLVEVDLSYNELEKIM 270

Query: 363 PQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQI 422
                K   L+ L++SNN L   +  +   +  L+ + +  NH+   +     Q   L+ 
Sbjct: 271 YHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLEN 328

Query: 423 LDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGN 481
           L +  N+I  +L        ++ + LS N            N L  +  +++   ++  
Sbjct: 329 LYLDHNSIV-TLKL-STHHTLKNLTLSHNDWD--------CNSLRALFRNVARPAVDDA 377

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  109 bits (274), Expect = 5e-25
 Identities = 64/392 (16%), Positives = 121/392 (30%), Gaps = 78/392 (19%)

Query: 304 LSNNQLTGEIPEHLAMGCV--------SLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEG 355
           +   Q     P      C+            + +     + +    +  L N   +  + 
Sbjct: 1   VGGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN 60

Query: 356 NHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFC 415
           +         L     ++ L L++  +             ++ + M  N I    P  F 
Sbjct: 61  STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 120

Query: 416 QLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSY 475
            + +L +L +  N++S                         L  G F N   L  L +S 
Sbjct: 121 NVPLLTVLVLERNDLS------------------------SLPRGIFHNTPKLTTLSMSN 156

Query: 476 NHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCF 534
           N+L   I D      + L  L L+ N L     + L  +  L   ++S N L   +    
Sbjct: 157 NNLE-RIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLS-TLAIPI 211

Query: 535 DNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS 594
               L   +N+ + ++                                      V   L+
Sbjct: 212 AVEELDASHNSINVVRG------------------------------------PVNVELT 235

Query: 595 GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK 654
            L L  N L       + N   +  ++LS+N L   +   F  ++ +E L +S N+L   
Sbjct: 236 ILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-A 292

Query: 655 IPYQLVELNTLAVFSVAYNNLSGKIPERAAQF 686
           +      + TL V  +++N+L   +     QF
Sbjct: 293 LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 323

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  104 bits (261), Expect = 2e-23
 Identities = 82/502 (16%), Positives = 173/502 (34%), Gaps = 51/502 (10%)

Query: 44  SMPSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPWCLANMTSLRIL 102
           ++ + + ++  N    +  R L    L     ++ L++ D  +     +  A   +++ L
Sbjct: 49  TLNNQKIVTFKN----STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKL 104

Query: 103 DVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAE 162
            +  N  I  +      ++  +  L+L  N     +      N  +L      NN +  E
Sbjct: 105 YMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNL--E 160

Query: 163 IIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLEN 222
            IE  +       LQ+L LSS     +           L +  +S+  ++       L  
Sbjct: 161 RIEDDTFQ-ATTSLQNLQLSSNRLTHVDLSLI----PSLFHANVSYNLLST------LAI 209

Query: 223 NTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISM 282
              + +L   ++S+     +    + +L +L +  NN        +      L   ++S 
Sbjct: 210 PIAVEELDASHNSIN---VVRGPVNVELTILKLQHNNLT-DTAWLLN--YPGLVEVDLSY 263

Query: 283 NALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRN 342
           N L+  +   F  M  L+ L +SNN+L   +  +      +L+ L LS+N+L  H+    
Sbjct: 264 NELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ-PIPTLKVLDLSHNHLL-HVERNQ 320

Query: 343 FNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSG----KIPRWLGNLTVL-- 396
                L  L L+ N  V  +   LS   +L+ L LS+N         + R +    V   
Sbjct: 321 PQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDA 377

Query: 397 -RHIIMPKN------HIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLS 449
            +H  +           E   P     L+ + +  + +                + ++  
Sbjct: 378 DQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRC----SATDTINSV 433

Query: 450 KNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPD-RVDGLSQLSYLILAHNNLEGEVPI 508
           +++ H  + +           L+   N L   +     + + Q   L   H  ++  +  
Sbjct: 434 QSLSH-YITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRR 492

Query: 509 QLCRLNQLQLLDLSNNNLHGHI 530
                + L     + N +  H+
Sbjct: 493 YRLPKDGLARSSDNLNKVFTHL 514

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 51/336 (15%), Positives = 113/336 (33%), Gaps = 23/336 (6%)

Query: 15  FPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVH 74
           F   + L+ LY+ + R+      L + G+ +P+++ L LS+    N+   +++       
Sbjct: 274 FVKMQRLERLYISNNRL----VALNLYGQPIPTLKVLDLSH----NHLLHVERNQPQFDR 325

Query: 75  LQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHF 134
           L+ L++  N +  +L   L+   +L+ L +S N    +   +   ++     +  +D H 
Sbjct: 326 LENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARP-AVDDADQHC 381

Query: 135 QIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKF 194
           +I   LE              +      +++  +LT+   ++Q         D I   + 
Sbjct: 382 KIDYQLEHGLCCKES------DKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQS 435

Query: 195 LYNQ-HDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLL 253
           L +       V L   +  E   N L     +L    +  + L+    L       LR  
Sbjct: 436 LSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQ--GLHAEIDTNLRRY 493

Query: 254 DVSKNNFQGHIPLEIGDILSRLTVFNISMNALD-GSIPSSFGNMNFLQFLDLSNNQLTGE 312
            + K+         +  + + L                 +       + L+  N  L  +
Sbjct: 494 RLPKDGL-ARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQ 552

Query: 313 IPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNL 348
           +    A      +  +L    ++     +N N    
Sbjct: 553 LDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTR 588

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  111 bits (279), Expect = 7e-27
 Identities = 51/346 (14%), Positives = 102/346 (29%), Gaps = 70/346 (20%)

Query: 201 LEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNF 260
            E +          + + L    ++ ++    + +         +S+   ++   +    
Sbjct: 14  RENLYFQGSTALRPYHDVL----SQWQRHYNADRNRWHSAWRQANSNN-PQIETRTGRAL 68

Query: 261 QGHIPLEIGDI-LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAM 319
           +      + D          +    L    P     ++ LQ + +    L  E+P+ +  
Sbjct: 69  K-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ- 124

Query: 320 GCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSN 379
                                       L  L L  N     +P S++  + L+ L +  
Sbjct: 125 ------------------------QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159

Query: 380 NSLSGKIPRWLGNLTV---------LRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNI 430
                ++P  L +            L+ + +    I   +P     L+ L+ L I ++ +
Sbjct: 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPL 218

Query: 431 SGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLS 490
           S +L                             +   L  LDL       N P    G +
Sbjct: 219 S-ALGP------------------------AIHHLPKLEELDLRGCTALRNYPPIFGGRA 253

Query: 491 QLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN 536
            L  LIL   +    +P+ + RL QL+ LDL        +PS    
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  110 bits (278), Expect = 1e-26
 Identities = 52/397 (13%), Positives = 103/397 (25%), Gaps = 89/397 (22%)

Query: 272 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPE--HLAMGCVSLRSLAL 329
            S         +                   D +            +  +   + R+L  
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKA 70

Query: 330 SNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRW 389
           + + LE      +      + L+L       + P    + S LQ + +    L  ++P  
Sbjct: 71  TADLLE------DATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDT 122

Query: 390 LGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLS 449
           +     L  + + +N +   +P     L  L+ L I        LP              
Sbjct: 123 MQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPE------------- 168

Query: 450 KNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQ 509
                                        + +      GL  L  L L    +   +P  
Sbjct: 169 --------------------------PLASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS 201

Query: 510 LCRLNQLQLLDLSNNNLHGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVD 565
           +  L  L+ L + N+ L   +     +      L  R     +L+ +   F         
Sbjct: 202 IANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCT--ALRNYPPIF--------- 249

Query: 566 PKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN 625
                                G    L   L L     +  +P  I  LT+++ L+L   
Sbjct: 250 ---------------------GGRAPLKR-LILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287

Query: 626 NLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVEL 662
                +PS  + L     + +  +  +    ++ V  
Sbjct: 288 VNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  105 bits (264), Expect = 8e-25
 Identities = 49/340 (14%), Positives = 99/340 (29%), Gaps = 56/340 (16%)

Query: 344 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 403
           + +    L  +G+  +      LS+         +    + +      N    +      
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTG 65

Query: 404 NHIEG-PIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTF 462
             ++     LE         L++    +    P                           
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLP-QFPD------------------------QA 100

Query: 463 FNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLS 522
           F    L  + +    L   +PD +   + L  L LA N L   +P  +  LN+L+ L + 
Sbjct: 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158

Query: 523 NNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSIT 582
                  +P    +T     +    +LQ     +  +        + +  S         
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI--------RSLPASI-------- 202

Query: 583 YTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIE 642
                 + +L S L +  + L   + P I +L K++ L+L         P  F     ++
Sbjct: 203 ----ANLQNLKS-LKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256

Query: 643 SLDLS-YNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE 681
            L L   + L   +P  +  L  L    +       ++P 
Sbjct: 257 RLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  104 bits (261), Expect = 2e-24
 Identities = 58/359 (16%), Positives = 109/359 (30%), Gaps = 52/359 (14%)

Query: 87  GSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNH 146
           GS      + +    L    +  +          L+  +    +D       S     N 
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDV----LSQWQRHYNADR--NRWHSAWRQANS 55

Query: 147 SRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRL 206
           +  +I       + A        T P     +L L         FP   +    L+++ +
Sbjct: 56  NNPQIETRTGRALKATADLLEDATQPG--RVALELR--SVPLPQFPDQAFRLSHLQHMTI 111

Query: 207 SHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLP--IHSHKQLRLLDVSKNNFQGHI 264
               +  E P+ + +    L  L+L  + L     LP  I S  +LR L +        +
Sbjct: 112 DAAGL-MELPDTM-QQFAGLETLTLARNPLR---ALPASIASLNRLRELSIRACPELTEL 166

Query: 265 PLEIGDI--------LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEH 316
           P  +           L  L    +    +  S+P+S  N+  L+ L + N+ L+  +   
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPA 224

Query: 317 LAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLF 376
           +                          +L  L  L L G   +   P      + L+ L 
Sbjct: 225 IH-------------------------HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259

Query: 377 LSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLP 435
           L + S    +P  +  LT L  + +        +P    QL    I+ +  +  +    
Sbjct: 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 91.9 bits (229), Expect = 2e-20
 Identities = 53/340 (15%), Positives = 99/340 (29%), Gaps = 61/340 (17%)

Query: 72  LVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSD 131
           L   Q  + AD +      W  AN  + +I   +   L  +              L L  
Sbjct: 32  LSQWQRHYNADRNRW-HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS 90

Query: 132 NHFQ-IPISLEPLFNHSRLKIFDAENNEIN---AEIIESHSLTTPNFQLQSLLLSSGYRD 187
                 P   +  F  S L+    +   +      +            L++L L+     
Sbjct: 91  VPLPQFP---DQAFRLSHLQHMTIDAAGLMELPDTM---QQFA----GLETLTLA--RNP 138

Query: 188 GITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSH 247
               P  + + + L  + +       E P  L   +       LVN              
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN-------------- 184

Query: 248 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNN 307
             L+ L +     +  +P  I + L  L    I  + L  ++  +  ++  L+ LDL   
Sbjct: 185 --LQSLRLEWTGIR-SLPASIAN-LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGC 239

Query: 308 QLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLS 367
                 P     G   L+ L L + +          NL                +P  + 
Sbjct: 240 TALRNYPPIFG-GRAPLKRLILKDCS----------NLL--------------TLPLDIH 274

Query: 368 KCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE 407
           + + L+ L L       ++P  +  L     I++P +   
Sbjct: 275 RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 50.7 bits (122), Expect = 7e-07
 Identities = 23/158 (14%), Positives = 50/158 (31%), Gaps = 14/158 (8%)

Query: 5   EVNGVLSGQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRT 64
            +    +        +L+ L ++   I    S    I   + +++ L + N    +    
Sbjct: 169 PLASTDASGEHQGLVNLQSLRLEWTGI---RSLPASIAN-LQNLKSLKIRN----SPLSA 220

Query: 65  LDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSI 124
           L   +  L  L+EL +       + P        L+ L +     + ++    +  LT +
Sbjct: 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQL 279

Query: 125 EDLILSDNHF--QIPISLEPLFNHSRLKIFDAENNEIN 160
           E L L       ++P  +  L       I     +   
Sbjct: 280 EKLDLRGCVNLSRLPSLIAQL---PANCIILVPPHLQA 314

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  108 bits (273), Expect = 3e-26
 Identities = 50/352 (14%), Positives = 112/352 (31%), Gaps = 57/352 (16%)

Query: 361 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 420
           EI Q+ +     +   ++++SL   +     +   ++ + +  N +      +      L
Sbjct: 4   EIKQNGN---RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 421 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG 480
           ++L++S N +            +  + L+ N +             ++  L  + N+++ 
Sbjct: 61  ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNIS- 112

Query: 481 NIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHG-HIPSCFDN--- 536
            +            + LA+N +     +     +++Q LDL  N +   +      +   
Sbjct: 113 RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 537 -TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSG 595
              L+ +YN    +                  + +                      L  
Sbjct: 171 LEHLNLQYNFIYDV----------------KGQVVFAK-------------------LKT 195

Query: 596 LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKI 655
           LDLS N+L   + P+  +   +  ++L +N L   I       +N+E  DL  N      
Sbjct: 196 LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT 253

Query: 656 PYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPI 707
                      V +VA   +  K+  +  +  T     + G       P P 
Sbjct: 254 LRDFF-SKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 97.0 bits (242), Expect = 4e-22
 Identities = 50/289 (17%), Positives = 92/289 (31%), Gaps = 25/289 (8%)

Query: 145 NHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYV 204
           N +R KI    ++ +   +            ++ L LS      I+    L     LE +
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAW---NVKELDLSGNPLSQIS-AADLAPFTKLELL 63

Query: 205 RLSH--IKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQG 262
            LS   +    +      E+ + LR L L N+ +       +     +  L  + NN   
Sbjct: 64  NLSSNVLYETLDL-----ESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS- 112

Query: 263 HIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCV 322
            +    G     +    ++ N +        G  + +Q+LDL  N++       LA    
Sbjct: 113 RVSCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 323 SLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSL 382
           +L  L L  N +             L  L L  N     +       + +  + L NN L
Sbjct: 170 TLEHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

Query: 383 SGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS 431
              I + L     L H  +  N       L     +  ++  ++   + 
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 93.5 bits (233), Expect = 6e-21
 Identities = 53/349 (15%), Positives = 122/349 (34%), Gaps = 56/349 (16%)

Query: 38  LQIIGESMPSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPWCLANM 96
           +  I ++    +   +++    ++ +           +++EL ++ N L       LA  
Sbjct: 2   IHEIKQNGNRYKIEKVTD----SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF 57

Query: 97  TSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAEN 156
           T L +L++SSN L     +  L  L+++  L L++N+      ++ L     ++   A N
Sbjct: 58  TKLELLNLSSNVL---YETLDLESLSTLRTLDLNNNY------VQELLVGPSIETLHAAN 108

Query: 157 NEINAEIIESHSLTTPNFQ-LQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEF 215
           N I+        ++    Q  +++ L+              N+       ++ +      
Sbjct: 109 NNIS-------RVSCSRGQGKKNIYLA-------------NNK-------ITML------ 135

Query: 216 PNWLLENNTKLRQLSLVNDSLVG-PFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSR 274
            +      ++++ L L  + +    F     S   L  L++  N     +  ++    ++
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV--FAK 192

Query: 275 LTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL 334
           L   ++S N L   +   F +   + ++ L NN+L   I + L     +L    L  N  
Sbjct: 193 LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGF 249

Query: 335 EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS 383
                 R+F   N     +          Q+  +C+             
Sbjct: 250 H-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.9 bits (125), Expect = 4e-07
 Identities = 16/70 (22%), Positives = 30/70 (42%)

Query: 607 IPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLA 666
           I     N  + +   ++ ++L   + S   +  N++ LDLS N LS      L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 667 VFSVAYNNLS 676
           + +++ N L 
Sbjct: 62  LLNLSSNVLY 71

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.8 bits (122), Expect = 7e-07
 Identities = 30/169 (17%), Positives = 60/169 (35%), Gaps = 19/169 (11%)

Query: 18  FKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQG--LCPLVHL 75
            +  K +Y+ + +I   T    +       +QYL L      N   T++          L
Sbjct: 119 GQGKKNIYLANNKI---TMLRDLDEGCRSRVQYLDLKL----NEIDTVNFAELAASSDTL 171

Query: 76  QELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ 135
           + L++  N +   +         L+ LD+SSN+L   +          +  + L +N   
Sbjct: 172 EHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLA-FMGPE-FQSAAGVTWISLRNNKLV 227

Query: 136 -IPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSS 183
            I  +L        L+ FD   N  +          + N ++Q++   +
Sbjct: 228 LIEKALRFS---QNLEHFDLRGNGFH--CGTLRDFFSKNQRVQTVAKQT 271

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  113 bits (283), Expect = 4e-26
 Identities = 79/428 (18%), Positives = 126/428 (29%), Gaps = 104/428 (24%)

Query: 272 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN 331
            +   V N+  + L  ++P        +  L + +N LT  +P         LR+L +S 
Sbjct: 39  NNGNAVLNVGESGL-TTLPDCLPA--HITTLVIPDNNLT-SLPALPP----ELRTLEVSG 90

Query: 332 NNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWL 390
           N L           L  L        H            S L  L++  N L+  +P   
Sbjct: 91  NQLT--SLPVLPPGLLELSIFSNPLTHLPALP-------SGLCKLWIFGNQLT-SLPVLP 140

Query: 391 GNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSK 450
             L  L    +  N +   +P    +L     L   +N ++ SLP               
Sbjct: 141 PGLQELS---VSDNQLAS-LPALPSEL---CKLWAYNNQLT-SLPM-------------- 178

Query: 451 NMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQL 510
             L   L+E           L +S N L  ++P      S+L  L   +N L   +P   
Sbjct: 179 --LPSGLQE-----------LSVSDNQLA-SLPT---LPSELYKLWAYNNRLT-SLPALP 220

Query: 511 CRLNQLQLLDLSNNNLHGHIPSCFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQ 569
                L+ L +S N L   +P        L    N  +SL P                  
Sbjct: 221 S---GLKELIVSGNRL-TSLPVLPSELKELMVSGNRLTSL-PML---------------- 259

Query: 570 ILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAG 629
                               PS L  L +  N+L   +P  + +L+   T+NL  N L+ 
Sbjct: 260 --------------------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298

Query: 630 PIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATF 689
                   + +         +          E   L     A + L        A    +
Sbjct: 299 RTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH--LAAADWLVPAREGEPAPADRW 356

Query: 690 NESSYEGN 697
           +    E N
Sbjct: 357 HMFGQEDN 364

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  103 bits (257), Expect = 6e-23
 Identities = 74/409 (18%), Positives = 118/409 (28%), Gaps = 83/409 (20%)

Query: 88  SLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ-IPISLEPLFNH 146
            +  CL N     +L+V  + L    ++ P      I  L++ DN+   +P         
Sbjct: 33  KMRACLNN--GNAVLNVGESGL----TTLPDCLPAHITTLVIPDNNLTSLPALP------ 80

Query: 147 SRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRL 206
             L+  +   N                 QL SL            P       +L     
Sbjct: 81  PELRTLEVSGN-----------------QLTSL------------PVLPPGLLELSIFSN 111

Query: 207 SHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPL 266
                       L    + L +L +  + L     LP      L+ L VS N     +P 
Sbjct: 112 PL--------THLPALPSGLCKLWIFGNQLT---SLP-VLPPGLQELSVSDNQLA-SLPA 158

Query: 267 EIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRS 326
                   L       N L  S+P        LQ L +S+NQL   +P   +     L  
Sbjct: 159 LPS----ELCKLWAYNNQLT-SLPMLPSG---LQELSVSDNQLA-SLPTLPS----ELYK 205

Query: 327 LALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKI 386
           L   NN L     S     + L  L + GN     +P      S L+ L +S N L+  +
Sbjct: 206 LWAYNNRLT----SLPALPSGLKELIVSGNRL-TSLPVLP---SELKELMVSGNRLT-SL 256

Query: 387 PRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQV 446
           P     L  L    + +N +   +P     L     +++  N +S           I   
Sbjct: 257 PMLPSGLLSLS---VYRNQLTR-LPESLIHLSSETTVNLEGNPLS-ERT-LQALREITSA 310

Query: 447 HLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYL 495
                 +      G      T  +   + + L            +    
Sbjct: 311 PGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMF 359

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 93.4 bits (232), Expect = 6e-20
 Identities = 72/405 (17%), Positives = 121/405 (29%), Gaps = 107/405 (26%)

Query: 19  KSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQEL 78
                L + ++ +   T+    +      I  L + +    NN  +L         L+ L
Sbjct: 40  NGNAVLNVGESGL---TTLPDCLP---AHITTLVIPD----NNLTSLPALPP---ELRTL 86

Query: 79  HMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPI 138
            ++ N L  SLP     +  L I       L            + +  L +  N      
Sbjct: 87  EVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPAL--------PSGLCKLWIFGNQLT--- 134

Query: 139 SLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQ 198
           SL  L     L+     +N++        SL     +L  L                   
Sbjct: 135 SLPVLPPG--LQELSVSDNQLA-------SLPALPSELCKLWAY---------------- 169

Query: 199 HDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKN 258
                                  NN    QL+ +                 L+ L VS N
Sbjct: 170 -----------------------NN----QLTSLPMLP-----------SGLQELSVSDN 191

Query: 259 NFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLA 318
                +P    + L +L  +N  + +L             L+ L +S N+LT  +P   +
Sbjct: 192 QLA-SLPTLPSE-LYKLWAYNNRLTSLPALPSG-------LKELIVSGNRLT-SLPVLPS 241

Query: 319 MGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLS 378
                L+ L +S N L     S     + L+ L +  N     +P+SL   SS   + L 
Sbjct: 242 ----ELKELMVSGNRLT----SLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292

Query: 379 NNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQIL 423
            N LS +  + L  +T       P    +        + R L + 
Sbjct: 293 GNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLA 337

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 78.4 bits (193), Expect = 4e-15
 Identities = 48/268 (17%), Positives = 88/268 (32%), Gaps = 70/268 (26%)

Query: 412 LEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMIL 471
           +  C      +L++ ++ ++ +LP C                            +T   L
Sbjct: 34  MRACLNNGNAVLNVGESGLT-TLPDC------------------------LPAHIT--TL 66

Query: 472 DLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIP 531
            +  N+L  ++P       +L  L ++ N L   +P+    L +L +      +L     
Sbjct: 67  VIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPS 121

Query: 532 SCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPS 591
                  L    N  +SL                     L+    +   +       +P+
Sbjct: 122 GL---CKLWIFGNQLTSLPVLPPG---------------LQELSVSDNQLA-----SLPA 158

Query: 592 LLSG---LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSY 648
           L S    L    N+L   +P     L +   L++S N LA  +P+  S L     L    
Sbjct: 159 LPSELCKLWAYNNQLT-SLPMLPSGLQE---LSVSDNQLAS-LPTLPSELYK---LWAYN 210

Query: 649 NKLSWKIPYQLVELNTLAVFSVAYNNLS 676
           N+L+  +P     L  L    V+ N L+
Sbjct: 211 NRLT-SLPALPSGLKEL---IVSGNRLT 234

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.4 bits (115), Expect = 8e-06
 Identities = 28/155 (18%), Positives = 48/155 (30%), Gaps = 20/155 (12%)

Query: 20  SLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELH 79
            LKEL +   R       L  +      ++ L +S     N   +L         L  L 
Sbjct: 222 GLKELIVSGNR-------LTSLPVLPSELKELMVSG----NRLTSLPMLPS---GLLSLS 267

Query: 80  MADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHF-QIPI 138
           +  N L   LP  L +++S   +++  N L    S   L  L  I           +  +
Sbjct: 268 VYRNQLT-RLPESLIHLSSETTVNLEGNPL----SERTLQALREITSAPGYSGPIIRFDM 322

Query: 139 SLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPN 173
           +       +R     A +  + A   E       +
Sbjct: 323 AGASAPRETRALHLAAADWLVPAREGEPAPADRWH 357

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  110 bits (277), Expect = 1e-25
 Identities = 85/498 (17%), Positives = 166/498 (33%), Gaps = 73/498 (14%)

Query: 44  SMPSIQYLSLSNSSVSNNSRTLDQGLC-PLVHLQELHMADNDLRGSLPWCLANMTSLRIL 102
           S+  ++ L +S+    N  + LD  +      L+ L ++ N L   +        +L+ L
Sbjct: 43  SLSKLRILIISH----NRIQYLDISVFKFNQELEYLDLSHNKLV-KISC--HPTVNLKHL 95

Query: 103 DVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAE 162
           D+S N            +++ ++ L LS  H +   S+ P+ + +  K+          E
Sbjct: 96  DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-SSVLPIAHLNISKVLLVLGET-YGE 153

Query: 163 IIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWL--- 219
             +   L   N +   ++  +           +    +LE   +  +  + +   +L   
Sbjct: 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL 213

Query: 220 --LENNTKLRQLSLVNDSLVGPF---RLPIHSHKQLRLLDVSKNNFQGHIPLEIGDI--- 271
             L+ N KL  L+L N           L +  H  +    +S    QG +     D    
Sbjct: 214 AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT 273

Query: 272 -LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALS 330
            L  L++  +  +         +   + +   + + +     +             L  S
Sbjct: 274 SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFS 332

Query: 331 NNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWL 390
           NN L   +F    +LT L  L L+ N       + LSK +    +               
Sbjct: 333 NNLLTDTVFENCGHLTELETLILQMNQL-----KELSKIA---EMTT------------- 371

Query: 391 GNLTVLRHIIMPKNHIEGPIPLEFC-QLRILQILDISDNNISGSLPSCYDFVCIEQVHLS 449
             +  L+ + + +N +        C   + L  L++S N ++ ++  C            
Sbjct: 372 -QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP---------- 420

Query: 450 KNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQ 509
                             + +LDL  N +  +IP +V  L  L  L +A N L+      
Sbjct: 421 ----------------PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGI 463

Query: 510 LCRLNQLQLLDLSNNNLH 527
             RL  LQ + L  N   
Sbjct: 464 FDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  107 bits (268), Expect = 2e-24
 Identities = 83/446 (18%), Positives = 147/446 (32%), Gaps = 48/446 (10%)

Query: 244 IHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLD 303
           I S  +LR+L +S N  Q ++ + +      L   ++S N L   I         L+ LD
Sbjct: 41  ILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL-VKIS--CHPTVNLKHLD 96

Query: 304 LSNNQLTGEIPEHLAMGC-VSLRSLALSNNNLEGHMFSRNFNLTNL-IWLQLEGNHFVGE 361
           LS N     +P     G    L+ L LS  +LE        +L    + L L   +   E
Sbjct: 97  LSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKE 155

Query: 362 IPQSLSKC--SSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEG------PIPLE 413
            P+ L      SL  +F +N      +   +  +  L    +     +        I  +
Sbjct: 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAK 215

Query: 414 FCQLRILQILDISDNNISG----SLPSCYDFVCIEQVHLSKNMLHGQLK----EGTFFNC 465
                 L  L +++   +      +        +    +S   L GQL     + +  + 
Sbjct: 216 LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSL 275

Query: 466 LTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNN 525
             L I  +  +          +  S ++      +       +   +++    LD SNN 
Sbjct: 276 KALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL 335

Query: 526 LHGHIPSCFDN----TTLHERYNNGSSLQPFETSF------------------VIMGGMD 563
           L   +     +     TL  + N    L                             G  
Sbjct: 336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395

Query: 564 VDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLS 623
              K   L S + ++  +T T    +P  +  LDL  N++   IP Q+  L  +Q LN++
Sbjct: 396 SWTKS--LLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKI-KSIPKQVVKLEALQELNVA 452

Query: 624 HNNLAGPIPSTFSNLRNIESLDLSYN 649
            N L       F  L +++ + L  N
Sbjct: 453 SNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  104 bits (262), Expect = 9e-24
 Identities = 86/450 (19%), Positives = 158/450 (35%), Gaps = 44/450 (9%)

Query: 252 LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTG 311
           L+D SKN    H+P    D+  + T+ NIS N +     S   +++ L+ L +S+N++  
Sbjct: 4   LVDRSKNGLI-HVP---KDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ- 58

Query: 312 EIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQS--LSKC 369
            +   +      L  L LS+N L            NL  L L  N F   +P        
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLVKISCHP---TVNLKHLDLSFNAF-DALPICKEFGNM 114

Query: 370 SSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHI---EGPIPLEFCQLRILQILDIS 426
           S L+ L LS   L       + +L + + +++        E P  L+      L I+  +
Sbjct: 115 SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174

Query: 427 DNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMI------LDLSYNHLNG 480
           +      L      V   ++   K +L              L        L L+      
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234

Query: 481 NIPDRVDGL---SQLSYLILAHNNLEG-----EVPIQLCRLNQLQLLDLSNNNLHGHIPS 532
           N   R+  L   + + Y  +++  L+G     +       L  L +  + ++        
Sbjct: 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY 294

Query: 533 CFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPS 591
            ++  + ++ +    S  +           M    K       DF+   +T T       
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVH--------MLCPSKISPFLHLDFSNNLLTDTVFENCGH 346

Query: 592 L--LSGLDLSCNRL--IGHIPPQIGNLTKIQTLNLSHNNL-AGPIPSTFSNLRNIESLDL 646
           L  L  L L  N+L  +  I      +  +Q L++S N++         S  +++ SL++
Sbjct: 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406

Query: 647 SYNKLSWKIPYQLVELNTLAVFSVAYNNLS 676
           S N L+  I   L     + V  +  N + 
Sbjct: 407 SSNILTDTIFRCL--PPRIKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 90.3 bits (224), Expect = 5e-19
 Identities = 83/540 (15%), Positives = 164/540 (30%), Gaps = 89/540 (16%)

Query: 97  TSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEP-LFNH-SRLKIFDA 154
               IL++S N  I  + +S ++ L+ +  LI+S N  Q    L+  +F     L+  D 
Sbjct: 21  QKTTILNISQNY-ISELWTSDILSLSKLRILIISHNRIQ---YLDISVFKFNQELEYLDL 76

Query: 155 ENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEE 214
            +N++    I  H        L+ L LS             +N           + + +E
Sbjct: 77  SHNKLVK--ISCHPTV----NLKHLDLS-------------FNA-------FDALPICKE 110

Query: 215 FPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSR 274
           F N      ++L+ L L    L    +  +     L +  V     + +   E  + L  
Sbjct: 111 FGNM-----SQLKFLGLSTTHLE---KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD 162

Query: 275 LTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL 334
               ++ +            +++     +L  + +   + ++     +S+ +   +N  L
Sbjct: 163 FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKL 222

Query: 335 EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLT 394
                  N  L N+          +  +  +     S+  + L              +L 
Sbjct: 223 ------SNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK 276

Query: 395 VLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYD-FVCIEQVHLSKNML 453
            L    +  +    P    +     + I + + +        C         +  S N+L
Sbjct: 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336

Query: 454 HGQLKEGTFFNCLTLMILDLSYNHLN--GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC 511
                     +   L  L L  N L     I +    +  L  L ++ N++  +     C
Sbjct: 337 T-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395

Query: 512 -RLNQLQLLDLSNNNLHGHIPSCFDN--TTLHERYNNGSSLQPFETSFVIMGGMDVDPKK 568
                L  L++S+N L   I  C       L    N   S+                   
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPK----------------- 438

Query: 569 QILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNL 627
              +                    L  L+++ N+L   +P  I   LT +Q + L  N  
Sbjct: 439 ---QVVKLEA--------------LQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 87.6 bits (217), Expect = 4e-18
 Identities = 74/404 (18%), Positives = 140/404 (34%), Gaps = 25/404 (6%)

Query: 15  FPHFKSLKELYMDD---ARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCP 71
                +LK L +       + +   F      +M  +++L LS + +  +S      L  
Sbjct: 86  CHPTVNLKHLDLSFNAFDALPICKEF-----GNMSQLKFLGLSTTHLEKSSVLPIAHLNI 140

Query: 72  LVHLQELHMADNDLRGSLPWCLAN--MTSLRILDVSSNQLI----GSISSSPLIHLTSIE 125
              L  L + +       P  L +    SL I+  ++ +       S+ +   + L++I+
Sbjct: 141 SKVL--LVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198

Query: 126 DLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSS-G 184
            ++  +        L  L  + +L      N E              +  +    +S+  
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258

Query: 185 YRDGITFPKFLYNQHDLEYVRLSHIKMNE--EFPNWLLENNTKLRQLSLVNDSLVGPFRL 242
            +  + F  F Y+   L+ + +  +  +      +++ E  + +   +           L
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML 318

Query: 243 PIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALD--GSIPSSFGNMNFLQ 300
                     LD S N        E    L+ L    + MN L     I      M  LQ
Sbjct: 319 CPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQ 377

Query: 301 FLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVG 360
            LD+S N ++ +  +       SL SL +S+N L   +F        +  L L  N    
Sbjct: 378 QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC--LPPRIKVLDLHSNKIK- 434

Query: 361 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKN 404
            IP+ + K  +LQ L +++N L          LT L+ I +  N
Sbjct: 435 SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  106 bits (267), Expect = 2e-25
 Identities = 58/265 (21%), Positives = 95/265 (35%), Gaps = 35/265 (13%)

Query: 270 DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLT-GEIPEHLAMGCVSLRSLA 328
            I S  T   +  N L       F  +  L  L LS+N L+          G  SL+ L 
Sbjct: 25  GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 329 LSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEIPQSL-SKCSSLQGLFLSNNSLSGKI 386
           LS N +     S NF  L  L  L  + ++       S+     +L  L +S+       
Sbjct: 85  LSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142

Query: 387 PRWLGNLTVLRHIIMPKN-HIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQ 445
                 L+ L  + M  N   E  +P  F +LR L  LD+S   +               
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-------------- 188

Query: 446 VHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEG 504
                     QL    F +  +L +L++S+N+   ++       L+ L  L  + N++  
Sbjct: 189 ----------QLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM- 236

Query: 505 EVPIQLCR--LNQLQLLDLSNNNLH 527
               Q  +   + L  L+L+ N+  
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  103 bits (260), Expect = 2e-24
 Identities = 60/246 (24%), Positives = 90/246 (36%), Gaps = 19/246 (7%)

Query: 300 QFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN---LEGHMFSRNFNLTNLIWLQLEGN 356
             +  ++  LT  +P  +     S   L L +N    L   +F     LT L  L L  N
Sbjct: 10  TEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFD---KLTQLTKLSLSSN 62

Query: 357 H--FVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLE- 413
              F G   QS    +SL+ L LS N +   +      L  L H+    ++++       
Sbjct: 63  GLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 121

Query: 414 FCQLRILQILDISDNNISGSLPS--CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMIL 471
           F  LR L  LDIS  +      +        +E + ++ N          F     L  L
Sbjct: 122 FLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180

Query: 472 DLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI 530
           DLS   L   +     + LS L  L ++HNN           LN LQ+LD S N++    
Sbjct: 181 DLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239

Query: 531 PSCFDN 536
                +
Sbjct: 240 KQELQH 245

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 88.9 bits (221), Expect = 2e-19
 Identities = 57/293 (19%), Positives = 100/293 (34%), Gaps = 66/293 (22%)

Query: 367 SKCS-SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI 425
           S+CS S   +  ++  L+  +P  +   +    + +  N ++      F +L  L  L +
Sbjct: 3   SRCSCSGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSL 59

Query: 426 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDR 485
           S N +S                             + F   +L  LDLS+N +   +   
Sbjct: 60  SSNGLS----------------------FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN 96

Query: 486 VDGLSQLSYLILAHNNLEGEVPIQLCR-LNQLQLLDLSNNNLHGHIPSCFDN----TTLH 540
             GL QL +L   H+NL+      +   L  L  LD+S+ +        F+       L 
Sbjct: 97  FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156

Query: 541 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSC 600
              N+       +                    F                  L+ LDLS 
Sbjct: 157 MAGNSFQENFLPDI-------------------FTELRN-------------LTFLDLSQ 184

Query: 601 NRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 652
            + +  + P    +L+ +Q LN+SHNN        +  L +++ LD S N + 
Sbjct: 185 CQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 87.8 bits (218), Expect = 5e-19
 Identities = 54/276 (19%), Positives = 93/276 (33%), Gaps = 52/276 (18%)

Query: 443 IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN-GNIPDRV-DGLSQLSYLILAHN 500
             ++ L  N L   L  G F     L  L LS N L+      +   G + L YL L+ N
Sbjct: 30  ATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 501 NLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSC--FDN----TTLHERYNNGSSLQPFET 554
            +   +      L QL+ LD  ++NL   +     F +      L   + +         
Sbjct: 89  GVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFN--- 143

Query: 555 SFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GN 613
                              F+  +              L  L ++ N    +  P I   
Sbjct: 144 -----------------GIFNGLSS-------------LEVLKMAGNSFQENFLPDIFTE 173

Query: 614 LTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYN 673
           L  +  L+LS   L    P+ F++L +++ L++S+N       +    LN+L V   + N
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233

Query: 674 NLSGKIPERAAQFATFNES----SYEGNPFLCGPPL 705
           ++     ++      F  S    +   N F C    
Sbjct: 234 HIM-TSKKQE--LQHFPSSLAFLNLTQNDFACTCEH 266

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 53/290 (18%), Positives = 97/290 (33%), Gaps = 63/290 (21%)

Query: 74  HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQL-IGSISSSPLIHLTSIEDLILSDN 132
               L +  N L+         +T L  L +SSN L      S      TS++ L LS N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 133 HFQIPISLEPLFNH-SRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITF 191
                 ++   F    +L+  D +++ +    +   S+      L  L            
Sbjct: 89  GVI---TMSSNFLGLEQLEHLDFQHSNLKQ--MSEFSVFLSLRNLIYL------------ 131

Query: 192 PKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLR 251
                   D+ +             N +    + L  L +                    
Sbjct: 132 --------DISHTHTRVA------FNGIFNGLSSLEVLKM-------------------- 157

Query: 252 LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTG 311
               + N+FQ +   +I   L  LT  ++S   L+   P++F +++ LQ L++S+N    
Sbjct: 158 ----AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF- 212

Query: 312 EIPEHLAMGCVSLRSLALSNNNL---EGHMFSRNFNLTNLIWLQLEGNHF 358
            +         SL+ L  S N++   +          ++L +L L  N F
Sbjct: 213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH--FPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 40/220 (18%), Positives = 76/220 (34%), Gaps = 13/220 (5%)

Query: 192 PKFLYNQHDLEYVRLSHIKMNE-EFPNWLLENNTKLRQLSLVNDSLVGPFRLP--IHSHK 248
                    L  + LS   ++     +      T L+ L L  + ++    +       +
Sbjct: 45  HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI---TMSSNFLGLE 101

Query: 249 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ 308
           QL  LD   +N +      +   L  L   +IS      +    F  ++ L+ L ++ N 
Sbjct: 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161

Query: 309 LTGEIPEHLAMGCVSLRSLALSNNNL---EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQS 365
                   +     +L  L LS   L       F+   +L++L  L +  N+F       
Sbjct: 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN---SLSSLQVLNMSHNNFFSLDTFP 218

Query: 366 LSKCSSLQGLFLSNNSLSGKIPRWLGNL-TVLRHIIMPKN 404
               +SLQ L  S N +     + L +  + L  + + +N
Sbjct: 219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 34/232 (14%), Positives = 83/232 (35%), Gaps = 27/232 (11%)

Query: 10  LSGQGFPHFKSLKELYMDDARI-ALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQG 68
              Q      SLK L +    +  ++++F       +  +++L   +    +N + + + 
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVITMSSNF-----LGLEQLEHLDFQH----SNLKQMSEF 119

Query: 69  --LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIED 126
                L +L  L ++    R +       ++SL +L ++ N    +        L ++  
Sbjct: 120 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179

Query: 127 LILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYR 186
           L LS    +  +S     + S L++ +  +N   +  +++         LQ L  S  + 
Sbjct: 180 LDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFS--LDTFPY-KCLNSLQVLDYSLNHI 235

Query: 187 DGITFPKFLYNQHDLEYVRLSHIKMN--------EEFPNWLLENNTKLRQLS 230
                 +  +    L ++ L+    N        + F  W+ +    L ++ 
Sbjct: 236 MTSKKQELQHFPSSLAFLNLTQ---NDFACTCEHQSFLQWIKDQRQLLVEVE 284

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 54.2 bits (131), Expect = 6e-08
 Identities = 36/222 (16%), Positives = 67/222 (30%), Gaps = 48/222 (21%)

Query: 471 LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL-HGH 529
           +  +   L  ++P  +   S  + L L  N L+        +L QL  L LS+N L    
Sbjct: 12  IRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 530 IPS-CFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYT 584
             S           L   +N   ++                       +F    +     
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVITMS---------------------SNFLGLEQ----- 102

Query: 585 YQGRVPSLLSGLDLSCNRLIGHIPPQ--IGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIE 642
                   L  LD   +  +  +       +L  +  L++SH +        F+ L ++E
Sbjct: 103 --------LEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153

Query: 643 SLDLSYNKLSWKIPYQ-LVELNTLAVFSVAYNNLSGKIPERA 683
            L ++ N            EL  L    ++   L  ++   A
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTA 194

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 5/86 (5%)

Query: 594 SGLDLSCNRL-IGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 652
           SG ++ CN   +  +P  I   +    L L  N L       F  L  +  L LS N LS
Sbjct: 8   SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 653 WK--IPYQLVELNTLAVFSVAYNNLS 676
           +K           +L    +++N + 
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVI 91

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  106 bits (266), Expect = 4e-25
 Identities = 54/291 (18%), Positives = 100/291 (34%), Gaps = 30/291 (10%)

Query: 249 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ 308
            LR++  S    +  +P    D+     + ++  N +       F N+  L  L L NN+
Sbjct: 32  HLRVVQCSDLGLE-KVP---KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 309 LTGEIPEHLAMGCVSLRSLALSNNNLE---GHMFSRNFNLTNLIWLQLEGNHFVGEIPQS 365
           ++ +I        V L  L LS N L+     M         L  L++  N         
Sbjct: 88  IS-KISPGAFAPLVKLERLYLSKNQLKELPEKMPK------TLQELRVHENEITKVRKSV 140

Query: 366 LSKCSSLQGLFLSNNSLSGKI--PRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQIL 423
            +  + +  + L  N L            +  L +I +   +I   IP        L  L
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTEL 197

Query: 424 DISDNNISGSLPSCY--DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGN 481
            +  N I+  + +        + ++ LS N +   +  G+  N   L  L L+ N L   
Sbjct: 198 HLDGNKIT-KVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-K 254

Query: 482 IPDRVDGLSQLSYLILAHNNLEG------EVPIQLCRLNQLQLLDLSNNNL 526
           +P  +     +  + L +NN+          P    +      + L +N +
Sbjct: 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  104 bits (262), Expect = 1e-24
 Identities = 68/366 (18%), Positives = 111/366 (30%), Gaps = 80/366 (21%)

Query: 298 FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN---LEGHMFSRNFNLTNLIWLQLE 354
            L+ +  S+  L  ++P+ L         L L NN    ++   F    NL NL  L L 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFK---NLKNLHTLILI 84

Query: 355 GNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEF 414
            N      P + +    L+ L+LS N L     +    L  LR   + +N I       F
Sbjct: 85  NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR---VHENEITKVRKSVF 141

Query: 415 CQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLS 474
             L  + ++++  N +  S                       ++ G F     L  + ++
Sbjct: 142 NGLNQMIVVELGTNPLKSS----------------------GIENGAFQGMKKLSYIRIA 179

Query: 475 YNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCF 534
             ++   IP  +     L+ L L  N +       L  LN L  L LS N++        
Sbjct: 180 DTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236

Query: 535 DN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLL 593
            N   L E + N + L                                           +
Sbjct: 237 ANTPHLRELHLNNNKLVKVPGGLADH-------------------------------KYI 265

Query: 594 SGLDLSCNRLIGHIPPQ-------IGNLTKIQTLNLSHNNL-AGPI-PSTFSNLRNIESL 644
             + L  N  I  I                   ++L  N +    I PSTF  +    ++
Sbjct: 266 QVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 324

Query: 645 DLSYNK 650
            L   K
Sbjct: 325 QLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 99.3 bits (248), Expect = 9e-23
 Identities = 60/309 (19%), Positives = 114/309 (36%), Gaps = 55/309 (17%)

Query: 361 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 420
           ++P+ L        L L NN ++        NL  L  +I+  N I    P  F  L  L
Sbjct: 45  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102

Query: 421 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHL-N 479
           + L +S N +   LP       ++++ + +N +  ++++  F     +++++L  N L +
Sbjct: 103 ERLYLSKNQLK-ELPE-KMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKS 159

Query: 480 GNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN-- 536
             I +    G+ +LSY+ +A  N+   +P  L     L  L L  N +     +      
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLN 216

Query: 537 --TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS 594
               L   +N+ S++                       S   T               L 
Sbjct: 217 NLAKLGLSFNSISAVDN--------------------GSLANTPH-------------LR 243

Query: 595 GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNL------AGPIPSTFSNLRNIESLDLSY 648
            L L+ N+L+  +P  + +   IQ + L +NN+          P   +   +   + L  
Sbjct: 244 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302

Query: 649 NKLS-WKIP 656
           N +  W+I 
Sbjct: 303 NPVQYWEIQ 311

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 84.3 bits (209), Expect = 8e-18
 Identities = 64/374 (17%), Positives = 128/374 (34%), Gaps = 84/374 (22%)

Query: 70  CPLV---HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIED 126
           CP     HL+ +  +D  L   +P  L       +LD+ +N+ I  I      +L ++  
Sbjct: 25  CPFRCQCHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNK-ITEIKDGDFKNLKNLHT 80

Query: 127 LILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYR 186
           LIL +N     IS        +L+      N++  + +      T    LQ L +     
Sbjct: 81  LILINNKISK-ISPGAFAPLVKLERLYLSKNQL--KELPEKMPKT----LQELRVH---- 129

Query: 187 DGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHS 246
                     N+       ++ +         +     ++  + L               
Sbjct: 130 ---------ENE-------ITKV------RKSVFNGLNQMIVVEL--------------G 153

Query: 247 HKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSS-FGNMNFLQFLDLS 305
              L+   +    FQG         + +L+   I+   +  +IP     +   L  L L 
Sbjct: 154 TNPLKSSGIENGAFQG---------MKKLSYIRIADTNIT-TIPQGLPPS---LTELHLD 200

Query: 306 NNQLTGEIPEHLAMGCVSLRSLALSNNNL---EGHMFSRNFNLTNLIWLQLEGNHFVGEI 362
            N++T ++      G  +L  L LS N++   +    +   N  +L  L L  N  V ++
Sbjct: 201 GNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLA---NTPHLRELHLNNNKLV-KV 255

Query: 363 PQSLSKCSSLQGLFLSNNSLSG------KIPRWLGNLTVLRHIIMPKNHIE-GPIPLE-F 414
           P  L+    +Q ++L NN++S         P +         + +  N ++   I    F
Sbjct: 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315

Query: 415 CQLRILQILDISDN 428
             + +   + + + 
Sbjct: 316 RCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.9 bits (208), Expect = 1e-17
 Identities = 56/240 (23%), Positives = 93/240 (38%), Gaps = 23/240 (9%)

Query: 443 IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNN 501
              + L  N +  ++K+G F N   L  L L  N ++  I       L +L  L L+ N 
Sbjct: 54  TALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQ 111

Query: 502 LEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN----TTLHERYNNGSSLQPFETSFV 557
           L+ E+P ++     LQ L +  N +     S F+       +    N   S      +F 
Sbjct: 112 LK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 558 IMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTK 616
            M           L        +IT      +P  L+ L L  N+ I  +       L  
Sbjct: 169 GMKK---------LSYIRIADTNITTI-PQGLPPSLTELHLDGNK-ITKVDAASLKGLNN 217

Query: 617 IQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 676
           +  L LS N+++     + +N  ++  L L+ NKL  K+P  L +   + V  +  NN+S
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 70.8 bits (174), Expect = 3e-13
 Identities = 57/328 (17%), Positives = 111/328 (33%), Gaps = 70/328 (21%)

Query: 10  LSGQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGL 69
           +    F + K+L  L + + +I   +         +  ++ L LS     N  + L + +
Sbjct: 67  IKDGDFKNLKNLHTLILINNKI---SKISPGAFAPLVKLERLYLSK----NQLKELPEKM 119

Query: 70  CPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQL-IGSISSSPLIHLTSIEDLI 128
                LQEL + +N++          +  + ++++ +N L    I +     +  +  + 
Sbjct: 120 --PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177

Query: 129 LSDNHFQ-IPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRD 187
           ++D +   IP     L     L     + N+I    +++ SL      L  L LS     
Sbjct: 178 IADTNITTIPQG---LP--PSLTELHLDGNKI--TKVDAASL-KGLNNLAKLGLS----- 224

Query: 188 GITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLP--IH 245
                   +N        +S +       N  L N   LR+L L N+ LV   ++P  + 
Sbjct: 225 --------FNS-------ISAV------DNGSLANTPHLRELHLNNNKLV---KVPGGLA 260

Query: 246 SHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLS 305
            HK ++++ +  NN                    I  N      P           + L 
Sbjct: 261 DHKYIQVVYLHNNNIS-----------------AIGSNDFCP--PGYNTKKASYSGVSLF 301

Query: 306 NNQLT-GEIPEHLAMGCVSLRSLALSNN 332
           +N +   EI            ++ L N 
Sbjct: 302 SNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 589 VPSLLSGLDLSCNRLIGHIPP-QIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLS 647
           +P   + LDL  N+ I  I      NL  + TL L +N ++   P  F+ L  +E L LS
Sbjct: 50  LPPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108

Query: 648 YNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERA 683
            N+L  ++P ++    TL    V  N ++ K+ +  
Sbjct: 109 KNQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSV 140

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 34/187 (18%), Positives = 65/187 (34%), Gaps = 19/187 (10%)

Query: 3   NCEVNGVLSGQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNS 62
           N   +  +    F   K L  + + D  I        I     PS+  L L      N  
Sbjct: 155 NPLKSSGIENGAFQGMKKLSYIRIADTNIT------TIPQGLPPSLTELHLDG----NKI 204

Query: 63  RTLDQG-LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHL 121
             +D   L  L +L +L ++ N +       LAN   LR L +++N+L+  +    L   
Sbjct: 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG-LADH 262

Query: 122 TSIEDLILSDNHFQ-IPIS----LEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQL 176
             I+ + L +N+   I  +           +        +N +    I+  +     +  
Sbjct: 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF-RCVYVR 321

Query: 177 QSLLLSS 183
            ++ L +
Sbjct: 322 AAVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 38/174 (21%), Positives = 56/174 (32%), Gaps = 43/174 (24%)

Query: 516 LQLLDLSNNNLHGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQIL 571
             LLDL NN +       F N     TL    N  S + P                    
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-------------------- 93

Query: 572 ESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPI 631
            +F    K             L  L LS N+L   +P        +Q L +  N +    
Sbjct: 94  GAFAPLVK-------------LERLYLSKNQL-KELPE--KMPKTLQELRVHENEITKVR 137

Query: 632 PSTFSNLRNIESLDLSYNKL-SWKIPYQ-LVELNTLAVFSVAYNNLSGKIPERA 683
            S F+ L  +  ++L  N L S  I       +  L+   +A  N++  IP+  
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL 190

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  108 bits (272), Expect = 7e-25
 Identities = 88/498 (17%), Positives = 159/498 (31%), Gaps = 79/498 (15%)

Query: 44  SMPSIQYLSLSNSSVSNNSRTLDQGLC-PLVHLQELHMADNDLRGSLPWCLANMTSLRIL 102
            +  ++ L LS+    N  R+LD  +      L+ L ++ N L+ ++      M SLR L
Sbjct: 74  FLSELRVLRLSH----NRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRHL 126

Query: 103 DVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPL-FNHSRLKIFDAENNEINA 161
           D+S N            +LT +  L LS   F+    L+ L   H  L     +    + 
Sbjct: 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR---QLDLLPVAHLHLSCILLDLVSYHI 183

Query: 162 EIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLE 221
           +  E+ SL  PN  +  L+        +     +     L+   +     N +     L 
Sbjct: 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS 243

Query: 222 N---NTKLRQLSLVNDSLVGPFRLPIHS---HKQLRLLDVSKNNFQGHIPLEIGDI---- 271
                  L  ++L +        + +      + +  L++        I  E        
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETA 303

Query: 272 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN 331
           L  L + ++       S  + +     +    LS +     I         S   L  + 
Sbjct: 304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVCPPSPSSFTFLNFTQ 362

Query: 332 NNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWL 390
           N        +    L  L  L L+ N       ++  K + +                  
Sbjct: 363 NVFT-DSVFQGCSTLKRLQTLILQRNGL-----KNFFKVALM-----------------T 399

Query: 391 GNLTVLRHIIMPKNHIE-GPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLS 449
            N++ L  + +  N +              + +L++S N ++GS+               
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV--------------- 444

Query: 450 KNMLHGQLKEGTFFNCLT--LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP 507
                        F CL   + +LDL  N +  +IP  V  L  L  L +A N L+    
Sbjct: 445 -------------FRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPD 490

Query: 508 IQLCRLNQLQLLDLSNNN 525
               RL  LQ + L +N 
Sbjct: 491 GVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  105 bits (264), Expect = 6e-24
 Identities = 76/428 (17%), Positives = 154/428 (35%), Gaps = 34/428 (7%)

Query: 244 IHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLD 303
           I    +LR+L +S N  +  +   +      L   ++S N L  +I      M  L+ LD
Sbjct: 72  ISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL-QNIS--CCPMASLRHLD 127

Query: 304 LSNNQLTGEIPEHLAMGC-VSLRSLALSNNNLEGHMFSRNFNL-TNLIWLQLEGNHFVGE 361
           LS N     +P     G    L  L LS             +L  + I L L   H  G 
Sbjct: 128 LSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGG 186

Query: 362 IPQSLS--KCSSLQGLFLSNNSLSGKIPRWLGNLTVL--RHIIMPKNHIEGPIPLEFCQL 417
             +SL     + L  +F  N+  S ++   +  L  L   +I +   + +  +       
Sbjct: 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT 246

Query: 418 RILQILDISDNNISGSLPSCYDFV------CIEQVHLSKNMLHGQLKEGTFFNCLT---- 467
           R   +L+++  +I  +               +E +++    +  ++    F    T    
Sbjct: 247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS 306

Query: 468 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 527
           LMI  +       +        ++++  +L+ ++      +     +    L+ + N   
Sbjct: 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT 366

Query: 528 GHIPSCFDNTT-LHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQ 586
             +         L       + L+ F    ++   M        LE+ D +  S+     
Sbjct: 367 DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNM------SSLETLDVSLNSLNSHAY 420

Query: 587 GRV---PSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIES 643
            R       +  L+LS N L G +   +    K++ L+L +N +   IP   ++L+ ++ 
Sbjct: 421 DRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIMS-IPKDVTHLQALQE 477

Query: 644 LDLSYNKL 651
           L+++ N+L
Sbjct: 478 LNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 81.5 bits (201), Expect = 3e-16
 Identities = 59/412 (14%), Positives = 123/412 (29%), Gaps = 33/412 (8%)

Query: 301 FLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN---LEGHMFSRNFNLTNLIWLQLEGNH 357
            +D SN  LT  +P+ L       ++L+LS N+   L     S    L+ L  L+L  N 
Sbjct: 35  MVDYSNRNLT-HVPKDL---PPRTKALSLSQNSISELRMPDISF---LSELRVLRLSHNR 87

Query: 358 FVGEIPQSL-SKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEG-PIPLEFC 415
               +   +      L+ L +S+N L   I      +  LRH+ +  N  +  P+  EF 
Sbjct: 88  I-RSLDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRHLDLSFNDFDVLPVCKEFG 143

Query: 416 QLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSY 475
            L  L  L +S              + +  + L     H +  E          +L L +
Sbjct: 144 NLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203

Query: 476 NHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFD 535
           +  +         ++ L +L L++  L  E   +L           +  N+         
Sbjct: 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263

Query: 536 NTTLH-ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS 594
             ++   ++     ++      + +        +   E F ++  ++           L 
Sbjct: 264 KCSVKLFQFFWPRPVEYLNIYNLTITE------RIDREEFTYSETALKS---------LM 308

Query: 595 GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK 654
              +     +           ++    LS ++          +  +   L+ + N  +  
Sbjct: 309 IEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS 368

Query: 655 IPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLP 706
           +      L  L    +  N L     + A      +                
Sbjct: 369 VFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHA 419

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 78.4 bits (193), Expect = 4e-15
 Identities = 85/452 (18%), Positives = 148/452 (32%), Gaps = 68/452 (15%)

Query: 224 TKLRQLSLVNDSL----VGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFN 279
           ++LR L L ++ +       F      ++ L  LDVS N  Q +I       ++ L   +
Sbjct: 76  SELRVLRLSHNRIRSLDFHVF----LFNQDLEYLDVSHNRLQ-NISC---CPMASLRHLD 127

Query: 280 ISMNALDGSIPSS--FGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGH 337
           +S N  D  +P    FGN+  L FL LS  +        +A   +S   L L + +++G 
Sbjct: 128 LSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGG 186

Query: 338 MFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSG-------KIPRWL 390
               +  + N   L L  +       Q     ++L  L LSN  L+             L
Sbjct: 187 ET-ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSEL 245

Query: 391 GNLTVLRHIIMPKNHIEGPIP---LEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVH 447
                L ++ +              +F   R ++ L+I +  I+       +F   E   
Sbjct: 246 TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE-RIDREEFTYSETAL 304

Query: 448 LSKNMLHGQ------LKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNN 501
            S  + H +       KE  +     + I  LS +             S  ++L    N 
Sbjct: 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364

Query: 502 LEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTT----LHERYNNGSSLQPFETSFV 557
               V      L +LQ L L  N L  +       T     L     + +SL        
Sbjct: 365 FTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423

Query: 558 IMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRL-------------- 603
                      + +   + ++  +T +    +P  +  LDL  NR+              
Sbjct: 424 CAW-------AESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQ 476

Query: 604 --------IGHIPPQI-GNLTKIQTLNLSHNN 626
                   +  +P  +   LT +Q + L  N 
Sbjct: 477 ELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 57.6 bits (139), Expect = 1e-08
 Identities = 59/359 (16%), Positives = 119/359 (33%), Gaps = 27/359 (7%)

Query: 15  FPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVH 74
                 L    +    ++ +    +     +P+   L L     S  S  ++  +  L H
Sbjct: 163 LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGH 222

Query: 75  LQ---------ELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIE 125
           LQ                 L            +L+ ++ +    +             +E
Sbjct: 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ---FFWPRPVE 279

Query: 126 DLILSDNHFQIPISLEPL-FNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSG 184
            L + +      I  E   ++ + LK    E+ +    +    +L +   ++   +LS  
Sbjct: 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339

Query: 185 YRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSL--VGPFRL 242
               I       +     ++  +     +           +L+ L L  + L       L
Sbjct: 340 DTPFIHMVCPP-SPSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNGLKNFFKVAL 397

Query: 243 PIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFL 302
              +   L  LDVS N+   H           + V N+S N L GS+         ++ L
Sbjct: 398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK--VKVL 455

Query: 303 DLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLE---GHMFSRNFNLTNLIWLQLEGNHF 358
           DL NN++   IP+ +     +L+ L +++N L+     +F     LT+L ++ L  N +
Sbjct: 456 DLHNNRIM-SIPKDV-THLQALQELNVASNQLKSVPDGVFD---RLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 43/335 (12%), Positives = 97/335 (28%), Gaps = 90/335 (26%)

Query: 19  KSLKELYMDDARIA--LNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQ 76
           + ++ L + +  I   ++         ++ S+    + N     +   L         + 
Sbjct: 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF---AEMN 332

Query: 77  ELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQI 136
              ++ +D       C  + +S   L+ + N             L  ++ LIL  N  + 
Sbjct: 333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLK- 390

Query: 137 PISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLY 196
             +   +   ++                   SL T +  L SL       +   + +   
Sbjct: 391 --NFFKVALMTK----------------NMSSLETLDVSLNSL-------NSHAYDRTCA 425

Query: 197 NQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVS 256
               +  + LS   +                    V   L            ++++LD+ 
Sbjct: 426 WAESILVLNLSSNMLT-----------------GSVFRCLP----------PKVKVLDLH 458

Query: 257 KNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEH 316
            N                             SIP    ++  LQ L++++NQL   +P+ 
Sbjct: 459 NNRIM--------------------------SIPKDVTHLQALQELNVASNQLK-SVPDG 491

Query: 317 LAMGCVSLRSLALSNNN----LEGHMFSRNFNLTN 347
           +     SL+ + L +N       G  +   +   +
Sbjct: 492 VFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKH 526

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  105 bits (263), Expect = 5e-24
 Identities = 60/284 (21%), Positives = 102/284 (35%), Gaps = 40/284 (14%)

Query: 249 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ 308
           Q   +  ++      +P     I S     N+  N +      +F +++ L+ L L  N 
Sbjct: 55  QFSKVVCTRRGLS-EVP---QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 309 LTGEIPEHLAMGCVSLRSLALSNNNL---EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQS 365
           +  +I      G  SL +L L +N L       F     L+ L  L L  N        +
Sbjct: 111 IR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFE---YLSKLRELWLRNNPIESIPSYA 166

Query: 366 LSKCSSLQGLFLS-NNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILD 424
            ++  SL  L L     L          L  L+++ +   +I+  +P     L  L+ L+
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELE 224

Query: 425 ISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPD 484
           +S N+                          +++ G+F    +L  L +  + ++  I  
Sbjct: 225 MSGNHFP------------------------EIRPGSFHGLSSLKKLWVMNSQVS-LIER 259

Query: 485 RV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 527
              DGL+ L  L LAHNNL          L  L  L L +N  +
Sbjct: 260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 89.8 bits (223), Expect = 5e-19
 Identities = 60/276 (21%), Positives = 101/276 (36%), Gaps = 50/276 (18%)

Query: 361 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 420
           E+PQ +   S+ + L L  N++         +L  L  + + +N I       F  L  L
Sbjct: 68  EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASL 125

Query: 421 QILDISDNNISGSLPSC--YDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLS-YNH 477
             L++ DN ++  +PS        + ++ L  N +   +    F    +LM LDL     
Sbjct: 126 NTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKK 183

Query: 478 LNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN 536
           L   I +   +GL  L YL L   N++ ++P  L  L  L+ L++S N+     P  F  
Sbjct: 184 LE-YISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHG 240

Query: 537 ----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSL 592
                 L    +  S ++                      +FD                 
Sbjct: 241 LSSLKKLWVMNSQVSLIER--------------------NAFDGLAS------------- 267

Query: 593 LSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNL 627
           L  L+L+ N L   +P  +   L  +  L+L HN  
Sbjct: 268 LVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.1 bits (203), Expect = 1e-16
 Identities = 52/267 (19%), Positives = 94/267 (35%), Gaps = 47/267 (17%)

Query: 443 IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNN 501
              ++L +N +   ++  TF +   L +L L  N +   I     +GL+ L+ L L  N 
Sbjct: 77  TRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNW 134

Query: 502 LEGEVPIQLCRLNQLQLLDLSNNNLHGHIPS-CFDN----TTLH-ERYNNGSSLQPFETS 555
           L          L++L+ L L NN +   IPS  F+       L          +      
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISE---- 189

Query: 556 FVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLT 615
                            +F+                 L  L+L    +     P +  L 
Sbjct: 190 ----------------GAFEGLFN-------------LKYLNLGMCNI--KDMPNLTPLV 218

Query: 616 KIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNL 675
            ++ L +S N+     P +F  L +++ L +  +++S         L +L   ++A+NNL
Sbjct: 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278

Query: 676 SGKIPERAAQFATFNES-SYEGNPFLC 701
           S  +P        +        NP+ C
Sbjct: 279 S-SLPHDLFTPLRYLVELHLHHNPWNC 304

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.4 bits (183), Expect = 4e-14
 Identities = 50/184 (27%), Positives = 76/184 (41%), Gaps = 9/184 (4%)

Query: 248 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPS-SFGNMNFLQFLDLSN 306
             L  L++  N     IP    + LS+L    +  N +  SIPS +F  +  L  LDL  
Sbjct: 123 ASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGE 180

Query: 307 -NQLTGEIPEHLAMGCVSLRSLALSNNNLEG-HMFSRNFNLTNLIWLQLEGNHFVGEIPQ 364
             +L   I E    G  +L+ L L   N++     +    L  L  L++ GNHF    P 
Sbjct: 181 LKKLE-YISEGAFEGLFNLKYLNLGMCNIKDMPNLT---PLVGLEELEMSGNHFPEIRPG 236

Query: 365 SLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILD 424
           S    SSL+ L++ N+ +S         L  L  + +  N++       F  LR L  L 
Sbjct: 237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296

Query: 425 ISDN 428
           +  N
Sbjct: 297 LHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.4 bits (183), Expect = 4e-14
 Identities = 52/262 (19%), Positives = 94/262 (35%), Gaps = 36/262 (13%)

Query: 74  HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNH 133
           + + L++ +N+++        ++  L +L +  N  I  I       L S+  L L DN 
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNW 134

Query: 134 FQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPK 193
             + I        S+L+     NN I +  I S++       L  L L            
Sbjct: 135 LTV-IPSGAFEYLSKLRELWLRNNPIES--IPSYAF-NRVPSLMRLDLGE---------- 180

Query: 194 FLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSH-KQLRL 252
               +       L +I           E    L+ L+L   ++     +P  +    L  
Sbjct: 181 --LKK-------LEYI------SEGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEE 222

Query: 253 LDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGE 312
           L++S N+F   I       LS L    +  + +     ++F  +  L  L+L++N L+  
Sbjct: 223 LEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-S 280

Query: 313 IPEHLAMGCVSLRSLALSNNNL 334
           +P  L      L  L L +N  
Sbjct: 281 LPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 41/231 (17%), Positives = 77/231 (33%), Gaps = 20/231 (8%)

Query: 10  LSGQGFPHFKSLKELYMDDARIAL--NTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQ 67
           +    F H   L+ L +    I      +F       + S+  L L +    N    +  
Sbjct: 90  IQADTFRHLHHLEVLQLGRNSIRQIEVGAF-----NGLASLNTLELFD----NWLTVIPS 140

Query: 68  G-LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIED 126
           G    L  L+EL + +N +     +    + SL  LD+   + +  IS      L +++ 
Sbjct: 141 GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200

Query: 127 LILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYR 186
           L L   + +    +  L     L+  +   N      I   S    +  L+ L + +   
Sbjct: 201 LNLGMCNIK---DMPNLTPLVGLEELEMSGNHF--PEIRPGSFHGLS-SLKKLWVMNSQV 254

Query: 187 DGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLV 237
             I           L  + L+H  +    P+ L      L +L L ++   
Sbjct: 255 SLIE-RNAFDGLASLVELNLAHNNL-SSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.8 bits (158), Expect = 5e-11
 Identities = 40/219 (18%), Positives = 72/219 (32%), Gaps = 46/219 (21%)

Query: 471 LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI 530
           +  +   L+  +P  +   S   YL L  NN++         L+ L++L L  N++    
Sbjct: 59  VVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE 115

Query: 531 PSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQ 586
              F+      TL    N  + +                       +F++ +K       
Sbjct: 116 VGAFNGLASLNTLELFDNWLTVIPS--------------------GAFEYLSK------- 148

Query: 587 GRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPS-TFSNLRNIESL 644
                 L  L L  N  I  IP      +  +  L+L        I    F  L N++ L
Sbjct: 149 ------LRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201

Query: 645 DLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERA 683
           +L    +   +P  L  L  L    ++ N+   +I   +
Sbjct: 202 NLGMCNIK-DMPN-LTPLVGLEELEMSGNHFP-EIRPGS 237

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  104 bits (261), Expect = 7e-24
 Identities = 59/263 (22%), Positives = 98/263 (37%), Gaps = 36/263 (13%)

Query: 270 DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLAL 329
            I +   + N+  N +     +SF ++  L+ L LS N +   I      G  +L +L L
Sbjct: 61  GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL 119

Query: 330 SNNNL---EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLS-NNSLSGK 385
            +N L       F     L+ L  L L  N        + ++  SL+ L L     LS  
Sbjct: 120 FDNRLTTIPNGAFV---YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI 176

Query: 386 IPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQ 445
                  L+ LR++ +   ++   IP     L  L  LD+S N++S              
Sbjct: 177 SEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLS-------------- 220

Query: 446 VHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEG 504
                      ++ G+F   + L  L +  + +   I     D L  L  + LAHNNL  
Sbjct: 221 ----------AIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTL 269

Query: 505 EVPIQLCRLNQLQLLDLSNNNLH 527
                   L+ L+ + L +N  +
Sbjct: 270 LPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 90.6 bits (225), Expect = 2e-19
 Identities = 58/292 (19%), Positives = 100/292 (34%), Gaps = 75/292 (25%)

Query: 370 SSLQGLFLSNNSLSGKIPRWL-GNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDN 428
           +    +     +L  ++P  +  N  +L    + +N I+      F  LR L+IL +S N
Sbjct: 43  NQFSKVICVRKNLR-EVPDGISTNTRLLN---LHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 429 NISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-D 487
           +I                          ++ G F     L  L+L  N L   IP+    
Sbjct: 99  HIR------------------------TIEIGAFNGLANLNTLELFDNRLT-TIPNGAFV 133

Query: 488 GLSQLSYLILAHNNLEGEVPIQL-CRLNQLQLLDLSNNNLHGHIPS-CFDN----TTLHE 541
            LS+L  L L +N +E  +P     R+  L+ LDL       +I    F+       L+ 
Sbjct: 134 YLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL 192

Query: 542 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCN 601
              N   +                                       +  L   LDLS N
Sbjct: 193 AMCNLREIPNLT----------------------------------PLIKLDE-LDLSGN 217

Query: 602 RLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 652
             +  I P     L  +Q L +  + +     + F NL+++  ++L++N L+
Sbjct: 218 H-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.1 bits (190), Expect = 5e-15
 Identities = 47/220 (21%), Positives = 71/220 (32%), Gaps = 43/220 (19%)

Query: 470 ILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHG 528
           +L+L  N +   I       L  L  L L+ N++          L  L  L+L +N L  
Sbjct: 68  LLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT 126

Query: 529 HIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYT 584
                F        L  R N   S+                       +F+         
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIESIPS--------------------YAFNRIPS----- 161

Query: 585 YQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIES 643
                   L  LDL   + + +I       L+ ++ LNL+  NL   IP   + L  ++ 
Sbjct: 162 --------LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDE 211

Query: 644 LDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERA 683
           LDLS N LS   P     L  L    +  + +   I   A
Sbjct: 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNA 250

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 75.6 bits (186), Expect = 2e-14
 Identities = 56/262 (21%), Positives = 97/262 (37%), Gaps = 36/262 (13%)

Query: 74  HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNH 133
           + + L++ +N ++        ++  L IL +S N  I +I       L ++  L L DN 
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNR 123

Query: 134 FQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPK 193
               I        S+LK     NN I +  I S++       L+ L L            
Sbjct: 124 LTT-IPNGAFVYLSKLKELWLRNNPIES--IPSYAF-NRIPSLRRLDLGE---------- 169

Query: 194 FLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSH-KQLRL 252
               +       LS+I           E  + LR L+L   +L     +P  +   +L  
Sbjct: 170 --LKR-------LSYI------SEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDE 211

Query: 253 LDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGE 312
           LD+S N+    I       L  L    +  + +     ++F N+  L  ++L++N LT  
Sbjct: 212 LDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-L 269

Query: 313 IPEHLAMGCVSLRSLALSNNNL 334
           +P  L      L  + L +N  
Sbjct: 270 LPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 75.2 bits (185), Expect = 2e-14
 Identities = 45/182 (24%), Positives = 69/182 (37%), Gaps = 7/182 (3%)

Query: 249 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLS-NN 307
            L  L++  N     IP      LS+L    +  N ++     +F  +  L+ LDL    
Sbjct: 113 NLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK 171

Query: 308 QLTGEIPEHLAMGCVSLRSLALSNNNLEG-HMFSRNFNLTNLIWLQLEGNHFVGEIPQSL 366
           +L+  I E    G  +LR L L+  NL      +    L  L  L L GNH     P S 
Sbjct: 172 RLS-YISEGAFEGLSNLRYLNLAMCNLREIPNLT---PLIKLDELDLSGNHLSAIRPGSF 227

Query: 367 SKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDIS 426
                LQ L++  + +         NL  L  I +  N++       F  L  L+ + + 
Sbjct: 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH 287

Query: 427 DN 428
            N
Sbjct: 288 HN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.2 bits (159), Expect = 3e-11
 Identities = 44/231 (19%), Positives = 81/231 (35%), Gaps = 20/231 (8%)

Query: 10  LSGQGFPHFKSLKELYMDDARIAL--NTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQ 67
           +    F H + L+ L +    I      +F       + ++  L L +    N   T+  
Sbjct: 79  IKVNSFKHLRHLEILQLSRNHIRTIEIGAF-----NGLANLNTLELFD----NRLTTIPN 129

Query: 68  G-LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIED 126
           G    L  L+EL + +N +     +    + SLR LD+   + +  IS      L+++  
Sbjct: 130 GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189

Query: 127 LILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYR 186
           L L+  + +    +  L    +L   D   N +    I   S       LQ L +     
Sbjct: 190 LNLAMCNLR---EIPNLTPLIKLDELDLSGNHL--SAIRPGSFQGLM-HLQKLWMIQSQI 243

Query: 187 DGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLV 237
             I       N   L  + L+H  +    P+ L      L ++ L ++   
Sbjct: 244 QVIE-RNAFDNLQSLVEINLAHNNL-TLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.4 bits (131), Expect = 9e-08
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 589 VPSLLSGLDLSCNRLIGHIPP-QIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLS 647
           + +    L+L  N+ I  I      +L  ++ L LS N++       F+ L N+ +L+L 
Sbjct: 62  ISTNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120

Query: 648 YNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERA 683
            N+L+       V L+ L    +  N +   IP  A
Sbjct: 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYA 155

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  102 bits (257), Expect = 8e-24
 Identities = 53/284 (18%), Positives = 105/284 (36%), Gaps = 29/284 (10%)

Query: 250 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPS-SFGNMNFLQFLDLSNNQ 308
           ++ LD+S N    +I          L    ++ N ++ +I   SF ++  L+ LDLS N 
Sbjct: 54  VKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNY 111

Query: 309 LTGEIPEHLAMGCVSLRSLALSNNNL----EGHMFSRNFNLTNLIWLQLEGNHFVGEIP- 363
           L+  +         SL  L L  N      E  +FS   +LT L  L++       +I  
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS---HLTKLQILRVGNMDTFTKIQR 167

Query: 364 QSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQIL 423
           +  +  + L+ L +  + L    P+ L ++  + H+I+        + +       ++ L
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227

Query: 424 DISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP 483
           ++ D ++                    + L    +  +     T   + ++   L   + 
Sbjct: 228 ELRDTDLD---------------TFHFSELS-TGETNSLIKKFTFRNVKITDESLF-QVM 270

Query: 484 DRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 527
             ++ +S L  L  + N L+        RL  LQ + L  N   
Sbjct: 271 KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 87.5 bits (217), Expect = 1e-18
 Identities = 52/301 (17%), Positives = 101/301 (33%), Gaps = 44/301 (14%)

Query: 362 IPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQ 421
           IP  L+   +++ L LSNN ++      L     L+ +++  N I       F  L  L+
Sbjct: 46  IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103

Query: 422 ILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGN 481
            LD+S N +S +L S                         F    +L  L+L  N     
Sbjct: 104 HLDLSYNYLS-NLSS-----------------------SWFKPLSSLTFLNLLGNPYKTL 139

Query: 482 IPDRV-DGLSQLSYLILAHNNLEGEVPIQ-LCRLNQLQLLDLSNNNLHGHIPSCFDN--- 536
               +   L++L  L + + +   ++  +    L  L+ L++  ++L  + P    +   
Sbjct: 140 GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQN 199

Query: 537 -TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSL--- 592
            + L         L        +   +    +   L   D  T   +    G   SL   
Sbjct: 200 VSHLILHMKQHILLLE--IFVDVTSSV----ECLELRDTDLDTFHFSELSTGETNSLIKK 253

Query: 593 --LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNK 650
                + ++   L   +   +  ++ +  L  S N L       F  L +++ + L  N 
Sbjct: 254 FTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312

Query: 651 L 651
            
Sbjct: 313 W 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 72.5 bits (178), Expect = 1e-13
 Identities = 58/314 (18%), Positives = 108/314 (34%), Gaps = 70/314 (22%)

Query: 97  TSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAEN 156
            +++ LD+S+N+ I  IS+S L    +++ L+L+ N      ++E          F    
Sbjct: 52  EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGIN---TIEE-------DSFS--- 97

Query: 157 NEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFP 216
                      SL      L+ L LS              N        LS++       
Sbjct: 98  -----------SLG----SLEHLDLSY-------------NY-------LSNL------S 116

Query: 217 NWLLENNTKLRQLSLVNDSL--VGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSR 274
           +   +  + L  L+L+ +    +G   L      +L++L V   +    I  +    L+ 
Sbjct: 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLF-SHLTKLQILRVGNMDTFTKIQRKDFAGLTF 175

Query: 275 LTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL 334
           L    I  + L    P S  ++  +  L L   Q    + E       S+  L L + +L
Sbjct: 176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDL 234

Query: 335 EGH--------MFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKI 386
           +            +          +++       ++ + L++ S L  L  S N L   +
Sbjct: 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-V 292

Query: 387 PRW-LGNLTVLRHI 399
           P      LT L+ I
Sbjct: 293 PDGIFDRLTSLQKI 306

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.5 bits (173), Expect = 4e-13
 Identities = 45/255 (17%), Positives = 75/255 (29%), Gaps = 51/255 (20%)

Query: 467 TLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQL-CRLNQLQLLDLSNN 524
            +  LDLS N +   I +        L  L+L  N +   +       L  L+ LDLS N
Sbjct: 53  AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 525 NLHGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKS 580
            L     S F      T L+   N   +L                        F   TK 
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL-------------------FSHLTK- 150

Query: 581 ITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLR 639
                       L  L +        I  +    LT ++ L +  ++L    P +  +++
Sbjct: 151 ------------LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198

Query: 640 NIESLDLSYNKLSWKIPY---------QLVELNTLAVFSVAYNNLSGKIPERAAQFATFN 690
           N+  L L   +    +           + +EL    + +  ++ LS        +  TF 
Sbjct: 199 NVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257

Query: 691 ESSYEGNPFLCGPPL 705
                         L
Sbjct: 258 NVKITDESLFQVMKL 272

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.1 bits (172), Expect = 6e-13
 Identities = 54/321 (16%), Positives = 99/321 (30%), Gaps = 55/321 (17%)

Query: 54  SNSSVSNNSRTLD---QGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLI 110
            N     +S +L+    GL     ++ L +++N +       L    +L+ L ++SN  I
Sbjct: 32  RNGICKGSSGSLNSIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-I 88

Query: 111 GSISSSPLIHLTSIEDLILSDNHFQIPISLEP-LFNH-SRLKIFDAENNEINAEIIESHS 168
            +I       L S+E L LS N+     +L    F   S L   +   N           
Sbjct: 89  NTIEEDSFSSLGSLEHLDLSYNYLS---NLSSSWFKPLSSLTFLNLLGN----------- 134

Query: 169 LTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQ 228
                   ++L  +S +         L           + I              T L +
Sbjct: 135 ------PYKTLGETSLFSH----LTKLQILRVGNMDTFTKI------QRKDFAGLTFLEE 178

Query: 229 LSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDG- 287
           L +    L       + S + +  L +        +     D+ S +    +    LD  
Sbjct: 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTF 237

Query: 288 ---SIPS----SFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG---H 337
               + +    S       + + +++  L       L      L  L  S N L+     
Sbjct: 238 HFSELSTGETNSLIKKFTFRNVKITDESLFQ--VMKLLNQISGLLELEFSRNQLKSVPDG 295

Query: 338 MFSRNFNLTNLIWLQLEGNHF 358
           +F     LT+L  + L  N +
Sbjct: 296 IFD---RLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.3 bits (123), Expect = 7e-07
 Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 10/126 (7%)

Query: 15  FPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRT-----LDQGL 69
               +++  L +   +       L+I  +   S++ L L ++ +     +         L
Sbjct: 194 LKSIQNVSHLILHMKQH---ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250

Query: 70  CPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLIL 129
                 + + + D  L   +   L  ++ L  L+ S NQL  S+       LTS++ + L
Sbjct: 251 IKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWL 308

Query: 130 SDNHFQ 135
             N + 
Sbjct: 309 HTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.4 bits (113), Expect = 9e-06
 Identities = 28/179 (15%), Positives = 54/179 (30%), Gaps = 22/179 (12%)

Query: 15  FPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSR--TLDQG-LCP 71
           F    SL  L +            + +GE+        L    V N      + +     
Sbjct: 120 FKPLSSLTFLNLLGNPY-------KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172

Query: 72  LVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSD 131
           L  L+EL +  +DL+   P  L ++ ++  L +   Q    +    +   +S+E L L D
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRD 231

Query: 132 NHFQI-------PISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSS 183
                             L      +     +  +   +   + ++     L  L  S 
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS----GLLELEFSR 286

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  101 bits (253), Expect = 9e-23
 Identities = 66/395 (16%), Positives = 127/395 (32%), Gaps = 49/395 (12%)

Query: 283 NALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRN 342
             +  +   S   +  L  LD  N+ +T ++          L  L  ++NN+     S  
Sbjct: 28  FEMQATDTISEEQLATLTSLDCHNSSIT-DMTG--IEKLTGLTKLICTSNNITTLDLS-- 82

Query: 343 FNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMP 402
              TNL +L  + N     +   ++  + L  L    N L+ K+   +    +L ++   
Sbjct: 83  -QNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCA 135

Query: 403 KNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTF 462
           +N +     ++      L  LD   N    +         +  +  S N    ++ E   
Sbjct: 136 RNTLT---EIDVSHNTQLTELDCHLNKKI-TKLDVTPQTQLTTLDCSFN----KITELDV 187

Query: 463 FNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLS 522
                L  L+   N++   +   ++   QL++L  + N L     I +  L QL   D S
Sbjct: 188 SQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCS 241

Query: 523 NNNLHGHIPSCFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSI 581
            N L     S     TTLH    +   +             D+    Q++       + I
Sbjct: 242 VNPLTELDVSTLSKLTTLHCIQTDLLEI-------------DLTHNTQLIYFQAEGCRKI 288

Query: 582 TYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNI 641
                     L   LD     +   +   +    K+  L L++  L   +    S+   +
Sbjct: 289 KELDVTHNTQLYL-LDCQAAGIT-ELD--LSQNPKLVYLYLNNTELTE-LD--VSHNTKL 341

Query: 642 ESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 676
           +SL      +       + ++  L     A     
Sbjct: 342 KSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 96.7 bits (241), Expect = 3e-21
 Identities = 79/462 (17%), Positives = 145/462 (31%), Gaps = 81/462 (17%)

Query: 71  PLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILS 130
           P  +      A  +++ +       + +L  LD  ++ +      + +  LT +  LI +
Sbjct: 16  PDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSI---TDMTGIEKLTGLTKLICT 72

Query: 131 DNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGIT 190
            N+    I+   L  ++ L     ++N++    +      TP  +L  L   +     + 
Sbjct: 73  SNN----ITTLDLSQNTNLTYLACDSNKLTNLDV------TPLTKLTYLNCDTNKLTKLD 122

Query: 191 FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL 250
             +       L Y+  +   + E      + +NT+L +L    +  +    L +    QL
Sbjct: 123 VSQN----PLLTYLNCARNTLTE----IDVSHNTQLTELDCHLNKKITK--LDVTPQTQL 172

Query: 251 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLT 310
             LD S N       L++      L   N   N +   +         L FLD S+N+LT
Sbjct: 173 TTLDCSFNKITE---LDVSQ-NKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT 225

Query: 311 GEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCS 370
            EI          L     S N L     S    L+ L  L       + EI   L+  +
Sbjct: 226 -EIDVT---PLTQLTYFDCSVNPLTELDVS---TLSKLTTLHCIQTDLL-EID--LTHNT 275

Query: 371 SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNI 430
            L            ++   + + T L  +      I     L+  Q   L  L +++  +
Sbjct: 276 QLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTEL 330

Query: 431 SGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLS 490
           +  L                             +   L  L     H+  +    V  + 
Sbjct: 331 T-ELD--------------------------VSHNTKLKSLSCVNAHIQ-DFSS-VGKIP 361

Query: 491 QLSYLILAHNNLEGEVPIQLCRLNQL------QLLDLSNNNL 526
            L+    A       +P +    N L       LLD   N +
Sbjct: 362 ALNNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLLDQFGNPM 402

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 96.3 bits (240), Expect = 4e-21
 Identities = 84/469 (17%), Positives = 159/469 (33%), Gaps = 82/469 (17%)

Query: 43  ESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRIL 102
           E + ++  L   NSS+++ +     G+  L  L +L    N++  +L   L+  T+L  L
Sbjct: 39  EQLATLTSLDCHNSSITDMT-----GIEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYL 90

Query: 103 DVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAE 162
              SN+L    ++  +  LT +  L    N     ++   +  +  L   +   N     
Sbjct: 91  ACDSNKL----TNLDVTPLTKLTYLNCDTNK----LTKLDVSQNPLLTYLNCARN----- 137

Query: 163 IIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLEN 222
                        L  + +S              +   L  +     K   +     +  
Sbjct: 138 ------------TLTEIDVS--------------HNTQLTELDCHLNKKITKLD---VTP 168

Query: 223 NTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISM 282
            T+L  L    + +     L +  +K L  L+   NN      L++     +LT  + S 
Sbjct: 169 QTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNITK---LDLNQ-NIQLTFLDCSS 221

Query: 283 NALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRN 342
           N L   I      +  L + D S N LT E+          L +L     +L     +  
Sbjct: 222 NKLT-EID--VTPLTQLTYFDCSVNPLT-ELDVS---TLSKLTTLHCIQTDLLEIDLT-- 272

Query: 343 FNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMP 402
            + T LI+ Q EG   + E+   ++  + L  L      ++ ++   L     L ++ + 
Sbjct: 273 -HNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLN 326

Query: 403 KNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTF 462
              +     L+      L+ L   + +I     S      +     ++       KE   
Sbjct: 327 NTELTE---LDVSHNTKLKSLSCVNAHIQ-DFSSVGKIPALNNNFEAEGQTITMPKETLT 382

Query: 463 FNCLTLMI----LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP 507
            N LT+ +    LD   N +  NI     G+   +   +   NL  + P
Sbjct: 383 NNSLTIAVSPDLLDQFGNPM--NIEPGDGGVYDQATNTITWENLSTDNP 429

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 92.8 bits (231), Expect = 6e-20
 Identities = 79/468 (16%), Positives = 132/468 (28%), Gaps = 51/468 (10%)

Query: 226 LRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNAL 285
                     +     +       L  LD   ++      +E    L+ LT    + N +
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEK---LTGLTKLICTSNNI 76

Query: 286 DGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNL 345
             ++         L +L   +N+LT  +          L  L    N L     S     
Sbjct: 77  T-TLD--LSQNTNLTYLACDSNKLT-NLDVT---PLTKLTYLNCDTNKLTKLDVS---QN 126

Query: 346 TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNH 405
             L +L    N    EI   +S  + L  L    N    K+   +   T L  +    N 
Sbjct: 127 PLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK 181

Query: 406 IEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNC 465
           I     L+  Q ++L  L+   NNI+  L      + +  +  S N    +L E      
Sbjct: 182 ITE---LDVSQNKLLNRLNCDTNNIT-KLDLN-QNIQLTFLDCSSN----KLTEIDVTPL 232

Query: 466 LTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNN 525
             L   D S N L   +   V  LS+L+ L     +L     I L    QL         
Sbjct: 233 TQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCR 286

Query: 526 LHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTY 585
               +     NT L+      + +   + S           +   L         +T   
Sbjct: 287 KIKELDVT-HNTQLYLLDCQAAGITELDLS-----------QNPKLVYLYLNNTELTELD 334

Query: 586 QGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLD 645
                 L S L      +       +G +  +     +          T +N     ++ 
Sbjct: 335 VSHNTKLKS-LSCVNAHIQD-FSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVS 391

Query: 646 LSYNKLSW---KIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFN 690
                       I      +   A  ++ + NLS   P     F + N
Sbjct: 392 PDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSEN 439

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 89.0 bits (221), Expect = 9e-19
 Identities = 67/435 (15%), Positives = 122/435 (28%), Gaps = 74/435 (17%)

Query: 220 LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFN 279
           +E  T L +L   ++++     L +  +  L  L    N    ++ +     L++LT  N
Sbjct: 60  IEKLTGLTKLICTSNNITT---LDLSQNTNLTYLACDSNKLT-NLDV---TPLTKLTYLN 112

Query: 280 ISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMF 339
              N L             L +L+ + N LT EI          L  L    N       
Sbjct: 113 CDTNKL---TKLDVSQNPLLTYLNCARNTLT-EIDVS---HNTQLTELDCHLNKKIT--K 163

Query: 340 SRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHI 399
                 T L  L    N         +S+   L  L    N+++ K+   L     L  +
Sbjct: 164 LDVTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFL 217

Query: 400 IMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKE 459
               N +     ++   L  L   D S N ++  L        +  +H  +      L E
Sbjct: 218 DCSSNKLTE---IDVTPLTQLTYFDCSVNPLT-ELDVS-TLSKLTTLHCIQT----DLLE 268

Query: 460 GTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLL 519
               +   L+            +   V   +QL  L      +     + L +  +L  L
Sbjct: 269 IDLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYL 323

Query: 520 DLSNNNLHGHIPSCFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTT 578
            L+N  L     S      +L     +                                 
Sbjct: 324 YLNNTELTELDVSHNTKLKSLSCVNAHIQDFSSVGKI----------------------- 360

Query: 579 KSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNL 638
                         L+    +  + I  +P +      + T+ +S + L           
Sbjct: 361 ------------PALNNNFEAEGQTI-TMPKETLTNNSL-TIAVSPDLLDQFGNPMNIEP 406

Query: 639 RNIESLDLSYNKLSW 653
            +    D + N ++W
Sbjct: 407 GDGGVYDQATNTITW 421

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 72.8 bits (179), Expect = 1e-13
 Identities = 60/310 (19%), Positives = 96/310 (30%), Gaps = 62/310 (20%)

Query: 344 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 403
           N  + +    E          S  + ++L  L   N+S++      +  LT L  +I   
Sbjct: 19  NFASEVAAAFEMQAT---DTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTS 73

Query: 404 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF 463
           N+I     L+  Q   L  L    N ++ +L        +  ++   N    +L +    
Sbjct: 74  NNITT---LDLSQNTNLTYLACDSNKLT-NLD-VTPLTKLTYLNCDTN----KLTKLDVS 124

Query: 464 NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSN 523
               L  L+ + N L   I   V   +QL+ L    N       + +    QL  LD S 
Sbjct: 125 QNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKIT--KLDVTPQTQLTTLDCSF 179

Query: 524 NNLHGHIPSCFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSIT 582
           N +     S       L+   NN                         +   D       
Sbjct: 180 NKITELDVSQNKLLNRLNCDTNN-------------------------ITKLDLNQ---- 210

Query: 583 YTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIE 642
                     L+ LD S N+L   I   +  LT++   + S N L     ST S L    
Sbjct: 211 -------NIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDVSTLSKL---T 257

Query: 643 SLDLSYNKLS 652
           +L      L 
Sbjct: 258 TLHCIQTDLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 71.3 bits (175), Expect = 4e-13
 Identities = 64/367 (17%), Positives = 110/367 (29%), Gaps = 75/367 (20%)

Query: 17  HFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQ 76
              +L  L  D  ++        +    +  + YL+       N    LD    P   L 
Sbjct: 83  QNTNLTYLACDSNKLT------NLDVTPLTKLTYLNCDT----NKLTKLDVSQNP--LLT 130

Query: 77  ELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQI 136
            L+ A N L   +   +++ T L  LD   N+    I+   +   T +  L  S N    
Sbjct: 131 YLNCARNTLT-EID--VSHNTQLTELDCHLNKK---ITKLDVTPQTQLTTLDCSFNK--- 181

Query: 137 PISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLY 196
            I+   +  +  L   + + N I    ++ +       QL  L  S              
Sbjct: 182 -ITELDVSQNKLLNRLNCDTNNI--TKLDLNQNI----QLTFLDCS-------------S 221

Query: 197 NQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVS 256
           N+       L+ I          +   T+L       + L     L + +  +L  L   
Sbjct: 222 NK-------LTEID---------VTPLTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCI 262

Query: 257 KNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEH 316
           + +    I L      ++L  F          +     +   L  LD     +T E+   
Sbjct: 263 QTDLL-EIDLT---HNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-ELDLS 315

Query: 317 LAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLF 376
                  L  L L+N  L     S   + T L  L     H   +   S+ K  +L   F
Sbjct: 316 ---QNPKLVYLYLNNTELTELDVS---HNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNF 367

Query: 377 LSNNSLS 383
            +     
Sbjct: 368 EAEGQTI 374

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 94.7 bits (236), Expect = 2e-21
 Identities = 53/240 (22%), Positives = 80/240 (33%), Gaps = 38/240 (15%)

Query: 270 DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLAL 329
            I +      +  N +     +SF     L  L L +N L   I      G   L  L L
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDL 87

Query: 330 SNNN----LEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ-SLSKCSSLQGLFLSNNSLSG 384
           S+N     ++   F     L  L  L L+      E+        ++LQ L+L +N+L  
Sbjct: 88  SDNAQLRSVDPATFH---GLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ- 142

Query: 385 KIP-RWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCI 443
            +P     +L  L H+ +  N I       F  L  L  L +  N ++            
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA------------ 190

Query: 444 EQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNL 502
                        +    F +   LM L L  N+L+  +P      L  L YL L  N  
Sbjct: 191 ------------HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 92.4 bits (230), Expect = 9e-21
 Identities = 53/246 (21%), Positives = 84/246 (34%), Gaps = 38/246 (15%)

Query: 288 SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL---EGHMFSRNFN 344
           ++P         Q + L  N+++  +P      C +L  L L +N L   +   F+    
Sbjct: 25  AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFT---G 78

Query: 345 LTNLIWLQLEGNHFVGEIPQS-LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 403
           L  L  L L  N  +  +  +       L  L L    L    P     L  L+++ +  
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138

Query: 404 NHIEGPIPLE-FCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTF 462
           N ++  +P + F  L  L  L +  N IS                         + E  F
Sbjct: 139 NALQA-LPDDTFRDLGNLTHLFLHGNRIS------------------------SVPERAF 173

Query: 463 FNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDL 521
               +L  L L  N +  ++       L +L  L L  NNL       L  L  LQ L L
Sbjct: 174 RGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232

Query: 522 SNNNLH 527
           ++N   
Sbjct: 233 NDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 84.7 bits (210), Expect = 3e-18
 Identities = 48/211 (22%), Positives = 81/211 (38%), Gaps = 12/211 (5%)

Query: 250 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQL 309
            + + +  N    H+P         LT+  +  N L     ++F  +  L+ LDLS+N  
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 310 TGEIPEHLAMGCVSLRSLALSNNNL---EGHMFSRNFNLTNLIWLQLEGNHFVGEIP-QS 365
              +      G   L +L L    L      +F     L  L +L L+ N     +P  +
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR---GLAALQYLYLQDNALQ-ALPDDT 148

Query: 366 LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI 425
                +L  LFL  N +S    R    L  L  +++ +N +    P  F  L  L  L +
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 426 SDNNISGSLPSC--YDFVCIEQVHLSKNMLH 454
             NN+S +LP+        ++ + L+ N   
Sbjct: 209 FANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.7 bits (205), Expect = 1e-17
 Identities = 48/198 (24%), Positives = 75/198 (37%), Gaps = 11/198 (5%)

Query: 361 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 420
            +P  +   ++ Q +FL  N +S            L  + +  N +       F  L +L
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 421 QILDISDNNISGSLPSC--YDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHL 478
           + LD+SDN    S+     +    +  +HL +  L  +L  G F     L  L L  N L
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL 141

Query: 479 NGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN- 536
              +PD     L  L++L L  N +          L+ L  L L  N +    P  F + 
Sbjct: 142 Q-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 537 ---TTLHERYNNGSSLQP 551
               TL+   NN S+L  
Sbjct: 201 GRLMTLYLFANNLSALPT 218

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 47/242 (19%), Positives = 73/242 (30%), Gaps = 42/242 (17%)

Query: 467 TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 526
               + L  N ++            L+ L L  N L          L  L+ LDLS+N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 527 HGHIPS-CFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSI 581
              +    F       TLH        L P                      F       
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGP--------------------GLFRGLAA-- 130

Query: 582 TYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRN 640
                      L  L L  N  +  +P     +L  +  L L  N ++      F  L +
Sbjct: 131 -----------LQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178

Query: 641 IESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSY-EGNPF 699
           ++ L L  N+++   P+   +L  L    +  NNLS  +P  A       +      NP+
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

Query: 700 LC 701
           +C
Sbjct: 238 VC 239

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 66.2 bits (162), Expect = 6e-12
 Identities = 49/290 (16%), Positives = 79/290 (27%), Gaps = 85/290 (29%)

Query: 46  PSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDV 104
            + Q + L      N    +         +L  L +  N L          +  L  LD+
Sbjct: 32  AASQRIFLHG----NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 105 SSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEII 164
           S N  + S+  +    L  +  L L     Q    L P        +F            
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ---ELGP-------GLFR----------- 126

Query: 165 ESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNT 224
               L      LQ L L               N        L  +      P+    +  
Sbjct: 127 ---GLA----ALQYLYLQ-------------DNA-------LQAL------PDDTFRDLG 153

Query: 225 KLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNA 284
            L  L L                 ++    V +  F+G         L  L    +  N 
Sbjct: 154 NLTHLFL--------------HGNRIS--SVPERAFRG---------LHSLDRLLLHQNR 188

Query: 285 LDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL 334
           +    P +F ++  L  L L  N L+  +P        +L+ L L++N  
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 59.6 bits (145), Expect = 8e-10
 Identities = 35/200 (17%), Positives = 58/200 (29%), Gaps = 41/200 (20%)

Query: 490 SQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN----TTLHERYNN 545
           +    + L  N +             L +L L +N L     + F        L    N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 546 G-SSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLI 604
              S+ P                     +F    +             L  L L     +
Sbjct: 92  QLRSVDP--------------------ATFHGLGR-------------LHTLHLDRCG-L 117

Query: 605 GHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELN 663
             + P +   L  +Q L L  N L      TF +L N+  L L  N++S         L+
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177

Query: 664 TLAVFSVAYNNLSGKIPERA 683
           +L    +  N ++  +   A
Sbjct: 178 SLDRLLLHQNRVA-HVHPHA 196

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.5 bits (129), Expect = 8e-08
 Identities = 26/128 (20%), Positives = 52/128 (40%), Gaps = 11/128 (8%)

Query: 10  LSGQGFPHFKSLKELYMDDARI-ALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQG 68
           L    F    +L+ LY+ D  + AL     +     + ++ +L L      N   ++ + 
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQALPDDTFR----DLGNLTHLFLHG----NRISSVPER 171

Query: 69  -LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDL 127
               L  L  L +  N +    P    ++  L  L + +N L  ++ +  L  L +++ L
Sbjct: 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYL 230

Query: 128 ILSDNHFQ 135
            L+DN + 
Sbjct: 231 RLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 10/100 (10%)

Query: 589 VPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLS 647
           +P+    + L  NR I H+P         +  L L  N LA    + F+ L  +E LDLS
Sbjct: 30  IPAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 648 YNKLSWKIP----YQLVELNTLAVFSVAYNNLSGKIPERA 683
            N     +     + L  L+TL    +    L  ++    
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTL---HLDRCGLQ-ELGPGL 124

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 94.2 bits (234), Expect = 3e-21
 Identities = 62/271 (22%), Positives = 93/271 (34%), Gaps = 25/271 (9%)

Query: 250 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQL 309
           L+ +D   +  Q    ++    L RLTV    + +           ++ LQ L L N ++
Sbjct: 49  LKRVDTEADLGQFTDIIKSLS-LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV 107

Query: 310 TGEIP-EHLAMGCVSLRSLALSNNNLEGHMFS----RNFNLTNLIWLQLEGNHFVGEIPQ 364
           TG  P   L      L  L L N +           + +    L  L +   H +    +
Sbjct: 108 TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167

Query: 365 SLSKCSSLQGLFLSNNSLSGKI-------PRWLGNLTVLRHIIMPKNHIEGPIPLEFCQL 417
            +    +L  L LS+N   G+        P     L VL           G         
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227

Query: 418 RILQILDISDNNISGSLP--SCYDFVCIEQVHLSKNMLHGQLKEGTFFNCL--TLMILDL 473
             LQ LD+S N++  +    SC     +  ++LS   L            L   L +LDL
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK------QVPKGLPAKLSVLDL 281

Query: 474 SYNHLNGNIPDRVDGLSQLSYLILAHNNLEG 504
           SYN L+   P   D L Q+  L L  N    
Sbjct: 282 SYNRLDR-NPS-PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 87.6 bits (217), Expect = 6e-19
 Identities = 61/304 (20%), Positives = 88/304 (28%), Gaps = 17/304 (5%)

Query: 92  CLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKI 151
           C  N +  +    S+   +G+          S+E L+   +          +     LK 
Sbjct: 13  CSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKR 72

Query: 152 FDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQH-DLEYVRLSHIK 210
                  I + I+           LQ L L +    G   P  L     DL  + L ++ 
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 211 MNEEFPNWLLE----NNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPL 266
                  WL E        L+ LS+     +      +     L  LD+S N   G   L
Sbjct: 133 WAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191

Query: 267 EIGDI------LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMG 320
                      L  L + N  M    G   +       LQ LDLS+N L           
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 321 CVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNN 380
              L SL LS   L+  +         L  L L  N      P    +   +  L L  N
Sbjct: 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRL-DRNPSPD-ELPQVGNLSLKGN 306

Query: 381 SLSG 384
               
Sbjct: 307 PFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 80.3 bits (198), Expect = 1e-16
 Identities = 52/296 (17%), Positives = 93/296 (31%), Gaps = 60/296 (20%)

Query: 47  SIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPW-----CLANMTSLRI 101
           S++ L++  + + +        +  +  LQEL + + ++ G+ P         ++  L +
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 102 LDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINA 161
            +VS       ++         ++ L ++  H     S E +     L   D  +N    
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN-FSCEQVRVFPALSTLDLSDNPELG 187

Query: 162 EIIESHSLTTPNF-QLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLL 220
           E     +L    F  LQ L L                                       
Sbjct: 188 ERGLISALCPLKFPTLQVLALR-------------------------------------- 209

Query: 221 ENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNI 280
             N  +   S V  +L         +  QL+ LD+S N+ +        D  S+L   N+
Sbjct: 210 --NAGMETPSGVCSAL-------AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260

Query: 281 SMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG 336
           S   L             L  LDLS N+L    P    +    + +L+L  N    
Sbjct: 261 SFTGLKQVPKGLPAK---LSVLDLSYNRLD-RNPSPDEL--PQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.0 bits (192), Expect = 9e-16
 Identities = 67/368 (18%), Positives = 105/368 (28%), Gaps = 95/368 (25%)

Query: 278 FNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGH 337
           ++ + N L  +    +G    L++L    +           +  +SL+ L +    +   
Sbjct: 24  WSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSR 83

Query: 338 MFS---RNFNLTNLIWLQLEGNHFVGEIPQSLSKCS--SLQGLFLSNNSLSGKIPRWLGN 392
           +     R   ++ L  L LE     G  P  L + +   L  L L N S +     WL  
Sbjct: 84  ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAE 142

Query: 393 L-----TVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVH 447
           L       L+ + + + H       +      L  LD+SDN   G               
Sbjct: 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG------------ 190

Query: 448 LSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP 507
                L   L    F     L +L L    +                         G   
Sbjct: 191 -----LISALCPLKFPT---LQVLALRNAGME---------------------TPSGVCS 221

Query: 508 IQLCRLNQLQLLDLSNNNLHGHIP--SCFDNTTLHE---RYNNGSSLQPFETSFVIMGGM 562
                  QLQ LDLS+N+L       SC   + L+     +     +             
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG---------- 271

Query: 563 DVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNL 622
                                     +P+ LS LDLS NRL     P    L ++  L+L
Sbjct: 272 --------------------------LPAKLSVLDLSYNRL--DRNPSPDELPQVGNLSL 303

Query: 623 SHNNLAGP 630
             N     
Sbjct: 304 KGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.0 bits (166), Expect = 2e-12
 Identities = 58/360 (16%), Positives = 103/360 (28%), Gaps = 83/360 (23%)

Query: 326 SLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGK 385
           S        +  ++    +L  L  L+             + K  SL+ L +    +  +
Sbjct: 26  SAFNCLGAADVELYGGGRSLEYL--LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSR 83

Query: 386 IPRW---LGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVC 442
           I      +  ++ L+ + +    + G  P    +     +  ++  N+S +         
Sbjct: 84  ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-------- 135

Query: 443 IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNL 502
                         L E   +    L +L ++  H      ++V     LS L L+ N  
Sbjct: 136 ----------RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185

Query: 503 EGEVP----IQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVI 558
            GE      +   +   LQ+L L N                        +     ++   
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRN--------------------AGMETPSGVCSALA- 224

Query: 559 MGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKI 617
                                             L GLDLS N L            +++
Sbjct: 225 -----------------------------AARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255

Query: 618 QTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG 677
            +LNLS   L        + L     LDLSYN+L  + P    EL  +   S+  N    
Sbjct: 256 NSLNLSFTGLKQVPKGLPAKL---SVLDLSYNRLD-RNP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.4 bits (141), Expect = 3e-09
 Identities = 37/171 (21%), Positives = 59/171 (34%), Gaps = 20/171 (11%)

Query: 19  KSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCP--LVHLQ 76
             LK L +  A      +F        P++  L LS++        L   LCP     LQ
Sbjct: 149 PGLKVLSIAQAHS---LNFSCEQVRVFPALSTLDLSDNPELGER-GLISALCPLKFPTLQ 204

Query: 77  ELHMADNDLR---GSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNH 133
            L + +  +    G      A    L+ LD+S N L  +  +      + +  L LS   
Sbjct: 205 VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264

Query: 134 F-QIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSS 183
             Q+P  L       +L + D   N ++        L     Q+ +L L  
Sbjct: 265 LKQVPKGLPA-----KLSVLDLSYNRLD-RNPSPDELP----QVGNLSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 28/151 (18%), Positives = 49/151 (32%), Gaps = 20/151 (13%)

Query: 7   NGVLSGQGFPHFKSLKELYMDDARIALNTSFL-QIIGESMPSIQYLSLSNSSVSNNSRTL 65
           +   S +    F +L  L + D         +  +     P++Q L+L N+ +   S   
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 66  DQGLCPLVHLQELHMADNDLRGSLP-WCLANMTSLRILDVSSNQLIG------------- 111
                  V LQ L ++ N LR +         + L  L++S   L               
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLD 280

Query: 112 ----SISSSPLI-HLTSIEDLILSDNHFQIP 137
                +  +P    L  + +L L  N F   
Sbjct: 281 LSYNRLDRNPSPDELPQVGNLSLKGNPFLDS 311

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 94.3 bits (235), Expect = 4e-21
 Identities = 70/368 (19%), Positives = 114/368 (30%), Gaps = 85/368 (23%)

Query: 298 FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN---LEGHMFSRNFNLTNLIWLQLE 354
            L+ +  S+  L   +P+ ++        L L NN+   L    F     L +L  L L 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFK---GLQHLYALVLV 86

Query: 355 GNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEF 414
            N       ++ S    LQ L++S N L  +IP  L           P +          
Sbjct: 87  NNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL-----------PSS---------- 124

Query: 415 CQLRILQILDISDNNISGSLP--SCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILD 472
                L  L I DN I   +P         +  + +  N L     E   F+ L L  L 
Sbjct: 125 -----LVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLR 178

Query: 473 LSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPS 532
           +S   L   IP  +     L+ L L HN ++      L R ++L  L L +N +      
Sbjct: 179 ISEAKLT-GIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG 235

Query: 533 CFDN-TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPS 591
                 TL E + + + L         +                                
Sbjct: 236 SLSFLPTLRELHLDNNKLSRVPAGLPDL-------------------------------K 264

Query: 592 LLSGLDLSCNRLIGHIPPQI-------GNLTKIQTLNLSHNNLAGPI--PSTFSNLRNIE 642
           LL  + L  N  I  +                   ++L +N +      P+TF  + +  
Sbjct: 265 LLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323

Query: 643 SLDLSYNK 650
           ++     K
Sbjct: 324 AIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 87.4 bits (217), Expect = 1e-18
 Identities = 47/256 (18%), Positives = 85/256 (33%), Gaps = 30/256 (11%)

Query: 248 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNN 307
           ++L+ L +SKN+    IP    ++ S L    I  N +       F  +  +  +++  N
Sbjct: 102 RKLQKLYISKNHLV-EIP---PNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN 157

Query: 308 QLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ-SL 366
            L     E  A   + L  L +S   L   +         L  L L+ N     I    L
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQ-AIELEDL 213

Query: 367 SKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDIS 426
            + S L  L L +N +       L  L  LR + +  N +   +P     L++LQ++ + 
Sbjct: 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLH 272

Query: 427 DNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHL-NGNIPDR 485
            NNI+                +  N        G          + L  N +    +   
Sbjct: 273 TNNIT---------------KVGVNDFCPV---GFGVKRAYYNGISLFNNPVPYWEVQPA 314

Query: 486 V-DGLSQLSYLILAHN 500
               ++    +   + 
Sbjct: 315 TFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 82.8 bits (205), Expect = 3e-17
 Identities = 53/247 (21%), Positives = 93/247 (37%), Gaps = 25/247 (10%)

Query: 443 IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNN 501
              + L  N +  +L++  F     L  L L  N ++  I ++    L +L  L ++ N+
Sbjct: 56  TTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNH 113

Query: 502 LEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN----TTLHERYNNGSSLQPFETSFV 557
           L  E+P  L   + L  L + +N +       F        +    N   +      +F 
Sbjct: 114 LV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 558 IMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTK 616
            +           L     +   +T      +P  L+ L L  N+ I  I  +     +K
Sbjct: 171 GLK----------LNYLRISEAKLT-GIPKDLPETLNELHLDHNK-IQAIELEDLLRYSK 218

Query: 617 IQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 676
           +  L L HN +      + S L  +  L L  NKLS ++P  L +L  L V  +  NN++
Sbjct: 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

Query: 677 GKIPERA 683
            K+    
Sbjct: 278 -KVGVND 283

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 78.9 bits (195), Expect = 7e-16
 Identities = 57/375 (15%), Positives = 106/375 (28%), Gaps = 87/375 (23%)

Query: 70  CPLV---HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIED 126
           CP     HL+ +  +D  L+ ++P  ++      +LD+ +N  I  +       L  +  
Sbjct: 27  CPFGCHCHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNND-ISELRKDDFKGLQHLYA 82

Query: 127 LILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQ-LQSLLLSSGY 185
           L+L +N     I  +      +L+      N +         +       L  L +    
Sbjct: 83  LVLVNNKISK-IHEKAFSPLRKLQKLYISKNHL-------VEIPPNLPSSLVELRIH--- 131

Query: 186 RDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIH 245
                      N+       +  +      P  +      +  + +              
Sbjct: 132 ----------DNR-------IRKV------PKGVFSGLRNMNCIEM-------------- 154

Query: 246 SHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLS 305
               L         F G           +L    IS   L G           L  L L 
Sbjct: 155 GGNPLENSGFEPGAFDG----------LKLNYLRISEAKLTGIPKDLPET---LNELHLD 201

Query: 306 NNQLTGEIPEHLAMGCVSLRSLALSNNNL---EGHMFSRNFNLTNLIWLQLEGNHFVGEI 362
           +N++   I     +    L  L L +N +   E    S    L  L  L L+ N     +
Sbjct: 202 HNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLS---FLPTLRELHLDNNKLS-RV 256

Query: 363 PQSLSKCSSLQGLFLSNNSLSGKIP-------RWLGNLTVLRHIIMPKNHIEGPI--PLE 413
           P  L     LQ ++L  N+++ K+         +         I +  N +      P  
Sbjct: 257 PAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315

Query: 414 FCQLRILQILDISDN 428
           F  +     +   + 
Sbjct: 316 FRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.5 bits (155), Expect = 7e-11
 Identities = 50/357 (14%), Positives = 103/357 (28%), Gaps = 105/357 (29%)

Query: 10  LSGQGFPHFKSLKELYMDDARIAL--NTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQ 67
           L    F   + L  L + + +I+     +F       +  +Q L +S     N+   +  
Sbjct: 69  LRKDDFKGLQHLYALVLVNNKISKIHEKAF-----SPLRKLQKLYISK----NHLVEIPP 119

Query: 68  GLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDL 127
            L     L EL + DN +R       + + ++  +++  N           +  +  E  
Sbjct: 120 NL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP----------LENSGFEPG 167

Query: 128 ILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRD 187
                           F+  +L        ++    I      T    L  L        
Sbjct: 168 A---------------FDGLKLNYLRISEAKLTG--IPKDLPET----LNEL-------- 198

Query: 188 GITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSH 247
                        L++ ++  I          L   +KL +L L               H
Sbjct: 199 ------------HLDHNKIQAI------ELEDLLRYSKLYRLGL--------------GH 226

Query: 248 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNN 307
            Q+R   +   +            L  L   ++  N L   +P+   ++  LQ + L  N
Sbjct: 227 NQIR--MIENGSLSF---------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN 274

Query: 308 QLTGEIPE------HLAMGCVSLRSLALSNNNLEGHMFSRN--FNLTNLIWLQLEGN 356
            +T ++           +       ++L NN +            +T+ + +Q    
Sbjct: 275 NIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 41/221 (18%), Positives = 66/221 (29%), Gaps = 52/221 (23%)

Query: 470 ILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGH 529
           ++  S   L   +P  +      + L L +N++          L  L  L L NN +   
Sbjct: 37  VVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI 93

Query: 530 IPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTY 585
               F        L+   N+   + P                                  
Sbjct: 94  HEKAFSPLRKLQKLYISKNHLVEIPP---------------------------------- 119

Query: 586 QGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPI--PSTFSNLRNIE 642
              +PS L  L +  NR I  +P  +   L  +  + +  N L      P  F  L  + 
Sbjct: 120 --NLPSSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN 175

Query: 643 SLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERA 683
            L +S  KL+  IP  L    TL    + +N +   I    
Sbjct: 176 YLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIELED 212

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 97.0 bits (241), Expect = 4e-21
 Identities = 59/315 (18%), Positives = 103/315 (32%), Gaps = 73/315 (23%)

Query: 219 LLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVF 278
             +   K        +  V    L      Q   L +++ N    +P  +     ++TV 
Sbjct: 32  AWDKWEKQALPGENRNEAVS--LLKECLINQFSELQLNRLNLS-SLPDNLP---PQITVL 85

Query: 279 NISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHM 338
            I+ NAL  S+P    +   L++LD  +N+L+  +PE  A    SL+ L + NN L    
Sbjct: 86  EITQNALI-SLPELPAS---LEYLDACDNRLS-TLPELPA----SLKHLDVDNNQLT--- 133

Query: 339 FSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRH 398
                                  +P+  +    L+ +   NN L+  +P    +L VL  
Sbjct: 134 ----------------------MLPELPA---LLEYINADNNQLT-MLPELPTSLEVLS- 166

Query: 399 IIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLK 458
             +  N +     L       L+ LD+S N +  SLP+        + H S+        
Sbjct: 167 --VRNNQLTFLPEL----PESLEALDVSTNLLE-SLPAV-----PVRNHHSEETE----- 209

Query: 459 EGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQL 518
                     +      N +  +IP+ +  L     +IL  N L   +   L +      
Sbjct: 210 ----------IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPD 258

Query: 519 LDLSNNNLHGHIPSC 533
                          
Sbjct: 259 YHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 89.3 bits (221), Expect = 1e-18
 Identities = 60/365 (16%), Positives = 99/365 (27%), Gaps = 100/365 (27%)

Query: 295 NMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHM-FSRNFNLTNLIWLQL 353
           N NF    +   N ++                 AL   N    +   +   +     LQL
Sbjct: 8   NNNFSLSQNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQL 66

Query: 354 EGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLE 413
              +    +P +L     +  L ++ N+L   +P    +L  L       N +   +P  
Sbjct: 67  NRLNLS-SLPDNL--PPQITVLEITQNALI-SLPELPASLEYL---DACDNRLST-LPEL 118

Query: 414 FCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDL 473
              L   + LD+ +N ++  LP                 L   L+            ++ 
Sbjct: 119 PASL---KHLDVDNNQLT-MLPE----------------LPALLEY-----------INA 147

Query: 474 SYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSC 533
             N L   +P+     + L  L + +N L   +P        L+ LD+S N L   +P+ 
Sbjct: 148 DNNQLT-MLPEL---PTSLEVLSVRNNQLT-FLPELP---ESLEALDVSTNLLE-SLPAV 198

Query: 534 FDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLL 593
                  E                                                    
Sbjct: 199 PVRNHHSEE-------------------------------------------------TE 209

Query: 594 SGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW 653
                  NR I HIP  I +L    T+ L  N L+  I  + S               S 
Sbjct: 210 IFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSM 268

Query: 654 KIPYQ 658
               Q
Sbjct: 269 SDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 80.4 bits (198), Expect = 8e-16
 Identities = 55/304 (18%), Positives = 92/304 (30%), Gaps = 73/304 (24%)

Query: 374 GLFLSNNSLSGKIPRWLGNLTVLRHIIMPK-NHIEGPIPLEFCQLRILQILDISDNNISG 432
                 N++SG    +           +P  N  E    L+ C +     L ++  N+S 
Sbjct: 14  SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS- 72

Query: 433 SLPSCYDFVCIEQVHLSKNMLH------GQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV 486
           SLP       I  + +++N L         L+            LD   N L+  +P+  
Sbjct: 73  SLPDN-LPPQITVLEITQNALISLPELPASLEY-----------LDACDNRLS-TLPEL- 118

Query: 487 DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN-TTLHERYNN 545
              + L +L + +N L   +P        L+ ++  NN L   +P    +   L  R N 
Sbjct: 119 --PASLKHLDVDNNQLT-MLPELPA---LLEYINADNNQLT-MLPELPTSLEVLSVRNNQ 171

Query: 546 GSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIG 605
            + L                                        P  L  LD+S N L  
Sbjct: 172 LTFLPEL-------------------------------------PESLEALDVSTNLLE- 193

Query: 606 HIPPQIGNLTKIQT----LNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVE 661
            +P         +          N +   IP    +L    ++ L  N LS +I   L +
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQ 252

Query: 662 LNTL 665
               
Sbjct: 253 QTAQ 256

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 75.0 bits (184), Expect = 4e-14
 Identities = 59/343 (17%), Positives = 105/343 (30%), Gaps = 88/343 (25%)

Query: 83  NDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ-IPISLE 141
           +                 +   + N+ +  +       +    +L L+  +   +P +L 
Sbjct: 23  SGTYADYFSAWDKWEKQALPGENRNEAVSLL---KECLINQFSELQLNRLNLSSLPDNLP 79

Query: 142 PLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDL 201
           P     ++ + +   N                  L SL            P+   +   L
Sbjct: 80  P-----QITVLEITQN-----------------ALISL------------PELPAS---L 102

Query: 202 EYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQ 261
           EY+     +++      L E    L+ L +               + QL +L        
Sbjct: 103 EYLDACDNRLST-----LPELPASLKHLDV--------------DNNQLTML-------- 135

Query: 262 GHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGC 321
              P         L   N   N L   +P    +   L+ L + NNQLT  +PE      
Sbjct: 136 ---PELPA----LLEYINADNNQL-TMLPELPTS---LEVLSVRNNQLT-FLPELPE--- 180

Query: 322 VSLRSLALSNNNLEG--HMFSRNFNLTNL-IWLQLEGNHFVGEIPQSLSKCSSLQGLFLS 378
            SL +L +S N LE    +  RN +     I+ +   N     IP+++        + L 
Sbjct: 181 -SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILE 238

Query: 379 NNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQ 421
           +N LS +I   L   T       P+ +       +    R L 
Sbjct: 239 DNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLA 281

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 68.1 bits (166), Expect = 6e-12
 Identities = 68/342 (19%), Positives = 113/342 (33%), Gaps = 65/342 (19%)

Query: 49  QYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQ 108
           +  +L   + +     L +  C +    EL +   +L  SLP  L     + +L+++ N 
Sbjct: 37  EKQALPGENRNEAVSLLKE--CLINQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNA 91

Query: 109 LIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHS 168
           LI S+   P     S+E L   DN      +L  L   + LK  D +NN           
Sbjct: 92  LI-SLPELP----ASLEYLDACDNRLS---TLPELP--ASLKHLDVDNN----------- 130

Query: 169 LTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQ 228
                 QL  L            P+       LEY+   + ++    P       T L  
Sbjct: 131 ------QLTML------------PELPAL---LEYINADNNQL-TMLPELP----TSLEV 164

Query: 229 LSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILS---RLTVFNISMNAL 285
           LS+ N+ L     LP    + L  LDVS N  +  +P               F    N +
Sbjct: 165 LSVRNNQLTFLPELP----ESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI 219

Query: 286 DGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGC----VSLRSLALSNNNLEGHMFSR 341
              IP +  +++    + L +N L+  I E L+            +  S ++ + +   R
Sbjct: 220 -THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHR 278

Query: 342 NFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS 383
                   W        V +I  +              + LS
Sbjct: 279 PLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLS 320

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 65.0 bits (158), Expect = 5e-11
 Identities = 48/221 (21%), Positives = 75/221 (33%), Gaps = 54/221 (24%)

Query: 464 NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP-IQLCRLNQLQLLDLS 522
           N    +  +  YN ++G   D      +     L   N    V  ++ C +NQ   L L+
Sbjct: 8   NNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLN 67

Query: 523 NNNLHGHIPSCFDN--TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKS 580
             NL   +P       T L    N   SL                P+             
Sbjct: 68  RLNLS-SLPDNLPPQITVLEITQNALISL----------------PE------------- 97

Query: 581 ITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRN 640
                   +P+ L  LD   NRL   +P    +L     L++ +N L   +P   + L  
Sbjct: 98  --------LPASLEYLDACDNRLS-TLPELPASLKH---LDVDNNQLTM-LPELPALL-- 142

Query: 641 IESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE 681
            E ++   N+L+  +P     L  L   SV  N L+  +PE
Sbjct: 143 -EYINADNNQLT-MLPELPTSLEVL---SVRNNQLT-FLPE 177

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.9 bits (124), Expect = 6e-07
 Identities = 46/217 (21%), Positives = 74/217 (34%), Gaps = 40/217 (18%)

Query: 16  PHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHL 75
               SLK L +D+ +       L ++ E    ++Y++  N    N    L +       L
Sbjct: 117 ELPASLKHLDVDNNQ-------LTMLPELPALLEYINADN----NQLTMLPELPT---SL 162

Query: 76  QELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSP--LIHLTSIE-DLILSDN 132
           + L + +N L   LP       SL  LDVS+N L  S+ + P    H    E      +N
Sbjct: 163 EVLSVRNNQLT-FLP---ELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCREN 217

Query: 133 HF-QIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITF 191
               IP +   + +         E+N +++ I ES S      Q  +     G R   + 
Sbjct: 218 RITHIPEN---ILSLDPTCTIILEDNPLSSRIRESLS------QQTAQPDYHGPRIYFSM 268

Query: 192 PKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQ 228
                N          H  + +    W  EN      
Sbjct: 269 SDGQQNTL--------HRPLADAVTAWFPENKQSDVS 297

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 91.3 bits (226), Expect = 3e-19
 Identities = 60/334 (17%), Positives = 113/334 (33%), Gaps = 27/334 (8%)

Query: 267 EIGDI-----LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGC 321
            I  I      +     N+   ++  ++      +N +  +  +N+ +   + + +    
Sbjct: 10  PIKQIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQ-YL 64

Query: 322 VSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNS 381
            ++  L L+ N L         NL NL WL L+ N  + ++  SL     L+ L L +N 
Sbjct: 65  PNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDENK-IKDL-SSLKDLKKLKSLSLEHNG 120

Query: 382 LSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFV 441
           +S  I   L +L  L  + +  N I     L   +L  L  L + DN IS  +       
Sbjct: 121 IS-DIN-GLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQIS-DIVPLAGLT 175

Query: 442 CIEQVHLSKNMLHGQLKEGTFFNCLT-LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHN 500
            ++ ++LSKN     + +      L  L +L+L          +    L   + +     
Sbjct: 176 KLQNLYLSKN----HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 231

Query: 501 NLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSS---LQPFETSFV 557
           +L     I      +   +          +   F       +          QP +  + 
Sbjct: 232 SLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYT 291

Query: 558 IMGGMDVDPKKQILESFDFTTKSITYTYQGRVPS 591
           +   +D    K  +E+    T     T QG V  
Sbjct: 292 VSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFK 325

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 75.1 bits (184), Expect = 3e-14
 Identities = 58/314 (18%), Positives = 118/314 (37%), Gaps = 38/314 (12%)

Query: 21  LKELYMDDARIALNTSFLQIIG-ESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELH 79
           + E       I       QI   ++       +L   SV++           L  + ++ 
Sbjct: 1   MGETITVSTPIK------QIFPDDAFAETIKDNLKKKSVTDAV-----TQNELNSIDQII 49

Query: 80  MADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPIS 139
             ++D++ S+   +  + ++  L ++ N+ +  I   PL +L ++  L L +N  +I   
Sbjct: 50  ANNSDIK-SVQ-GIQYLPNVTKLFLNGNK-LTDI--KPLTNLKNLGWLFLDEN--KI-KD 101

Query: 140 LEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQH 199
           L  L +  +LK    E+N I+ +I     L     QL+SL L +   + IT    L    
Sbjct: 102 LSSLKDLKKLKSLSLEHNGIS-DINGLVHLP----QLESLYLGN---NKITDITVLSRLT 153

Query: 200 DLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNN 259
            L+ + L   ++++  P   L   TKL+ L L  + +       +   K L +L++    
Sbjct: 154 KLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQE 208

Query: 260 FQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAM 319
                  +  +  S L V N   N  DGS+ +     +   +   +      E    ++ 
Sbjct: 209 ----CLNKPINHQSNLVVPNTVKN-TDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSF 263

Query: 320 GCVSLRSLALSNNN 333
                 ++  +   
Sbjct: 264 IFYQPVTIGKAKAR 277

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.8 bits (178), Expect = 2e-13
 Identities = 50/348 (14%), Positives = 91/348 (26%), Gaps = 67/348 (19%)

Query: 372 LQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS 431
           +      +  +    P             + K  +   +     +L  +  +  ++++I 
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 56

Query: 432 GSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLT-LMILDLSYNHLNGNIPDRVDGLS 490
            S+        + ++ L+ N    +L +      L  L  L L  N +  ++   +  L 
Sbjct: 57  -SVQGIQYLPNVTKLFLNGN----KLTDIKPLTNLKNLGWLFLDENKIK-DLSS-LKDLK 109

Query: 491 QLSYLILAHNN---LEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN----TTLHERY 543
           +L  L L HN    + G     L  L QL+ L L NN +     +         TL    
Sbjct: 110 KLKSLSLEHNGISDING-----LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLED 162

Query: 544 NNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRL 603
           N  S + P                                       + L  L LS N  
Sbjct: 163 NQISDIVPLAGL-----------------------------------TKLQNLYLSKNH- 186

Query: 604 IGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL----SWKIPYQL 659
           I  +   +  L  +  L L          +  SNL    ++  +   L            
Sbjct: 187 ISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDY 245

Query: 660 VELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPI 707
            + N         N +S    +                  L       
Sbjct: 246 EKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVS 293

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 71.3 bits (174), Expect = 5e-13
 Identities = 42/226 (18%), Positives = 84/226 (37%), Gaps = 26/226 (11%)

Query: 220 LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDI-----LSR 274
           ++    + +L L  + L      P+ + K L  L + +N         I D+     L +
Sbjct: 61  IQYLPNVTKLFLNGNKLTDIK--PLTNLKNLGWLFLDENK--------IKDLSSLKDLKK 110

Query: 275 LTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL 334
           L   ++  N +  S  +   ++  L+ L L NN++T      L+     L +L+L +N +
Sbjct: 111 LKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKIT--DITVLS-RLTKLDTLSLEDNQI 165

Query: 335 EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLT 394
                     LT L  L L  NH + ++ ++L+   +L  L L +     K      NL 
Sbjct: 166 SD--IVPLAGLTKLQNLYLSKNH-ISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLV 221

Query: 395 VLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDF 440
           V   +      +  P  +        +  ++  +    +    + F
Sbjct: 222 VPNTVKNTDGSLVTPEIISDDG--DYEKPNVKWHLPEFTNEVSFIF 265

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 71.3 bits (174), Expect = 6e-13
 Identities = 45/215 (20%), Positives = 89/215 (41%), Gaps = 18/215 (8%)

Query: 13  QGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPL 72
           +   + K+L  L++D+ +I  + S L    + +  ++ LSL ++ +S+ +     GL  L
Sbjct: 81  KPLTNLKNLGWLFLDENKIK-DLSSL----KDLKKLKSLSLEHNGISDIN-----GLVHL 130

Query: 73  VHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDN 132
             L+ L++ +N +       L+ +T L  L +  NQ I  I   PL  LT +++L LS N
Sbjct: 131 PQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQ-ISDI--VPLAGLTKLQNLYLSKN 185

Query: 133 HFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFP 192
           H      L  L     L + +  + E   + I   S       +++   S    + I+  
Sbjct: 186 HIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDD 242

Query: 193 KFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLR 227
                 +   ++     +++  F   +     K R
Sbjct: 243 GDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKAR 277

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.8 bits (126), Expect = 3e-07
 Identities = 29/149 (19%), Positives = 63/149 (42%), Gaps = 13/149 (8%)

Query: 3   NCEVNGVLSGQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNS 62
           + E NG+    G  H   L+ LY+ + +I  + + L      +  +  LSL ++ +S+  
Sbjct: 115 SLEHNGISDINGLVHLPQLESLYLGNNKIT-DITVL----SRLTKLDTLSLEDNQISDIV 169

Query: 63  RTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLT 122
                 L  L  LQ L+++ N +   L   LA + +L +L++ S +   +   +   +L 
Sbjct: 170 -----PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQE-CLNKPINHQSNLV 221

Query: 123 SIEDLILSDNHFQIPISLEPLFNHSRLKI 151
               +  +D     P  +    ++ +  +
Sbjct: 222 VPNTVKNTDGSLVTPEIISDDGDYEKPNV 250

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 82.3 bits (204), Expect = 1e-16
 Identities = 77/467 (16%), Positives = 156/467 (33%), Gaps = 83/467 (17%)

Query: 19  KSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNS-RTLDQGLCPLVHLQE 77
             ++ L +    +  + +    +   +   Q + L +  ++    + +   L     L E
Sbjct: 3   LDIQSLDIQCEEL--SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 78  LHMADNDLRGSLPWCLANM-----TSLRILDVSSNQL----IGSISSSPLIHLTSIEDLI 128
           L++  N+L      C+          ++ L + +  L     G +SS+ L  L ++++L 
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELH 119

Query: 129 LSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSS---GY 185
           LSDN                         +   +++    L  P  +L+ L L       
Sbjct: 120 LSDNLLG----------------------DAGLQLL-CEGLLDPQCRLEKLQLEYCSLSA 156

Query: 186 RDGITFPKFLYNQHDLEYVRLSHIKMNEE----FPNWLLENNTKLRQLSLVNDSL----V 237
                    L  + D + + +S+  +NE         L ++  +L  L L +  +     
Sbjct: 157 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216

Query: 238 GPFRLPIHSHKQLRLLDVSKNNFQG----HIPLEIGDILSRLTVFNISMNALD----GSI 289
                 + S   LR L +  N         +   +    SRL    I    +     G +
Sbjct: 217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL 276

Query: 290 PSSFGNMNFLQFLDLSNNQLTGE----IPEHLAMGCVSLRSLALSNNNLE-------GHM 338
                    L+ L L+ N+L  E    + E L      L SL + + +           +
Sbjct: 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 336

Query: 339 FSRNFNLTNLIWLQLEGNHFVGEIPQSLSK-----CSSLQGLFLSNNSLSGK----IPRW 389
            ++N     L+ LQ+  N       + L +      S L+ L+L++  +S      +   
Sbjct: 337 LAQN---RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393

Query: 390 LGNLTVLRHIIMPKNHIEGPIPLEFCQL-----RILQILDISDNNIS 431
           L     LR + +  N +     L+  +       +L+ L + D   S
Sbjct: 394 LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 76.9 bits (190), Expect = 7e-15
 Identities = 82/488 (16%), Positives = 141/488 (28%), Gaps = 109/488 (22%)

Query: 97  TSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLF----NHSRLKIF 152
             ++ LD+   +L  +  +  L  L   + + L D         + +      +  L   
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT-EARCKDISSALRVNPALAEL 61

Query: 153 DAENNEINAEIIE--SHSLTTPNFQLQSLLLSS---GYRDGITFPKFLYNQHDLEYVRLS 207
           +  +NE+    +      L TP+ ++Q L L +              L     L+ + LS
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 208 HIKMNEE----FPNWLLENNTKLRQLSLVNDSL----VGPFRLPIHSHKQLRLLDVSKNN 259
              + +         LL+   +L +L L   SL      P    + +    + L VS N+
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 260 FQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLA- 318
                   +   L                      +   L+ L L +  +T +    L  
Sbjct: 182 INEAGVRVLCQGLKD--------------------SPCQLEALKLESCGVTSDNCRDLCG 221

Query: 319 --MGCVSLRSLALSNNNL--EGHMF---SRNFNLTNLIWLQLEGNHF----VGEIPQSLS 367
                 SLR LAL +N L   G            + L  L +          G++ + L 
Sbjct: 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281

Query: 368 KCSSLQGLFLSNNSLSGKIPRWLGNL-----TVLRHIIMPKNHIEGPIPLEFCQ------ 416
              SL+ L L+ N L  +  R L          L  + +             C       
Sbjct: 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA----ACCSHFSSVL 337

Query: 417 --LRILQILDISDNNISGS----------LPSCYDFVCIEQVHLSKNMLHGQLKEGTFF- 463
              R L  L IS+N +  +           P       +  + L+   +           
Sbjct: 338 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGS----VLRVLWLADCDVSD---SSCSSL 390

Query: 464 -----NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQL 518
                   +L  LDLS N L         G+ QL    +                  L+ 
Sbjct: 391 AATLLANHSLRELDLSNNCLG------DAGILQLV-ESVRQPG------------CLLEQ 431

Query: 519 LDLSNNNL 526
           L L +   
Sbjct: 432 LVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 72.7 bits (179), Expect = 1e-13
 Identities = 76/454 (16%), Positives = 139/454 (30%), Gaps = 94/454 (20%)

Query: 248 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALD----GSIPSSFGNMNFLQFLD 303
             ++ LD+           E+  +L +  V  +    L       I S+      L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 304 LSNNQLTGE----IPEHLAMGCVSLRSLALSNNNLE-------GHMFSRNFNLTNLIWLQ 352
           L +N+L       + + L      ++ L+L N  L                    L  L 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL---PTLQELH 119

Query: 353 LEGNHFVGEIPQSLSK-----CSSLQGLFLSNNSLSGK----IPRWLGNLTVLRHIIMPK 403
           L  N       Q L +        L+ L L   SLS      +   L      + + +  
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179

Query: 404 NHIEGPIPLEFCQL-----RILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLK 458
           N I        CQ        L+ L +    ++    +C D   I    ++         
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD--NCRDLCGI----VASKA------ 227

Query: 459 EGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQL 518
                   +L  L L  N L         G+++L   +L  ++             +L+ 
Sbjct: 228 --------SLRELALGSNKLGD------VGMAELCPGLLHPSS-------------RLRT 260

Query: 519 LDLSNNNLH----GHIPSCF-DNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILES 573
           L +    +     G +        +L E    G+ L       +    ++   +   LES
Sbjct: 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ---LES 317

Query: 574 FDFTTKSITYTYQGRVPSLLSG------LDLSCNRLIGHIPPQIG-----NLTKIQTLNL 622
               + S T        S+L+       L +S NRL      ++        + ++ L L
Sbjct: 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 377

Query: 623 SHNNL----AGPIPSTFSNLRNIESLDLSYNKLS 652
           +  ++       + +T     ++  LDLS N L 
Sbjct: 378 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 64.6 bits (158), Expect = 5e-11
 Identities = 81/419 (19%), Positives = 139/419 (33%), Gaps = 58/419 (13%)

Query: 12  GQGFPHFKSLKELYMDDARIALNTSFLQIIGESM----PSIQYLSLSNSSVSNNS-RTLD 66
                   +L EL +    +      +  + + +      IQ LSL N  ++      L 
Sbjct: 49  SSALRVNPALAELNLRSNEL--GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106

Query: 67  QGLCPLVHLQELHMADNDLRGSLPWCLANM-----TSLRILDVSSNQLIGSIS----SSP 117
             L  L  LQELH++DN L  +    L          L  L +     + + S    +S 
Sbjct: 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASV 165

Query: 118 LIHLTSIEDLILSDNHFQ----IPISLEPLFNHSRLKIFDAENNEINAEIIE--SHSLTT 171
           L      ++L +S+N         +      +  +L+    E+  + ++        + +
Sbjct: 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS 225

Query: 172 PNFQLQSLLLSSGYR--DGITF--PKFLYNQHDLEYVRLSHIKMNEEFPNWL---LENNT 224
               L+ L L S      G+    P  L+    L  + +    +  +    L   L    
Sbjct: 226 -KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284

Query: 225 KLRQLSLVNDSLVGP-----FRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSR---LT 276
            L++LSL  + L            +    QL  L V   +F          +L++   L 
Sbjct: 285 SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLL 344

Query: 277 VFNISMNALDGS----IPSSFGNMNF-LQFLDLSNNQLTGEIPEHLA---MGCVSLRSLA 328
              IS N L+ +    +    G     L+ L L++  ++      LA   +   SLR L 
Sbjct: 345 ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404

Query: 329 LSNNNLE---GHMFSRNF--NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSL 382
           LSNN L          +       L  L L   ++  E+         LQ L     SL
Sbjct: 405 LSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM------EDRLQALEKDKPSL 457

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 75.4 bits (186), Expect = 4e-15
 Identities = 53/236 (22%), Positives = 95/236 (40%), Gaps = 31/236 (13%)

Query: 270 DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLAL 329
           ++       ++S N L      SF +   LQ LDLS  ++   I +        L +L L
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLIL 83

Query: 330 SNNNL---EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSL-SGK 385
           + N +       FS    L++L  L     +        +    +L+ L +++N + S K
Sbjct: 84  TGNPIQSLALGAFS---GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 386 IPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQ 445
           +P +  NLT L H+ +  N I+     +   L  + +L++                    
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL-------------------S 181

Query: 446 VHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHN 500
           + LS N ++  ++ G F   + L  L L  N L  ++PD + D L+ L  + L  N
Sbjct: 182 LDLSLNPMN-FIQPGAFKE-IRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 48/238 (20%), Positives = 86/238 (36%), Gaps = 41/238 (17%)

Query: 420 LQILDISDNNISGSLPSC--YDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNH 477
            + LD+S N +   L S   + F  ++ + LS+  +   +++G + +   L  L L+ N 
Sbjct: 30  TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 478 LNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHG-HIPSCFD 535
           +  ++      GLS L  L+    NL       +  L  L+ L++++N +    +P  F 
Sbjct: 88  IQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 536 N----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPS 591
           N      L    N   S+                             +         +P 
Sbjct: 147 NLTNLEHLDLSSNKIQSIYC--------------------TDLRVLHQ---------MPL 177

Query: 592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYN 649
           L   LDLS N  +  I P      +++ L L  N L       F  L +++ + L  N
Sbjct: 178 LNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 38/189 (20%), Positives = 63/189 (33%), Gaps = 58/189 (30%)

Query: 467 TLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNN 525
           +   LDLS+N L  ++         +L  L L+   ++         L+ L  L L+ N 
Sbjct: 29  STKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 526 LHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTY 585
           +                     SL                       +F   +       
Sbjct: 88  I--------------------QSLAL--------------------GAFSGLSS------ 101

Query: 586 QGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNL-AGPIPSTFSNLRNIES 643
                  L  L       +  +     G+L  ++ LN++HN + +  +P  FSNL N+E 
Sbjct: 102 -------LQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153

Query: 644 LDLSYNKLS 652
           LDLS NK+ 
Sbjct: 154 LDLSSNKIQ 162

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.8 bits (130), Expect = 6e-08
 Identities = 54/266 (20%), Positives = 97/266 (36%), Gaps = 65/266 (24%)

Query: 73  VHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDN 132
              + L ++ N LR    +   +   L++LD+S  + I +I       L+ +  LIL+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN 86

Query: 133 HFQIPISLEP-LFNH-SRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGIT 190
             Q   SL    F+  S L+   A    +    +E+  +      L+ L ++        
Sbjct: 87  PIQ---SLALGAFSGLSSLQKLVAVETNL--ASLENFPIGHLK-TLKELNVA-------- 132

Query: 191 FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL 250
                +N        +   K+ E F                   +L             L
Sbjct: 133 -----HNL-------IQSFKLPEYF------------------SNLT-----------NL 151

Query: 251 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISM----NALDGSIPSSFGNMNFLQFLDLSN 306
             LD+S N  Q  I      +L ++ + N+S+    N ++   P +F  +  L+ L L  
Sbjct: 152 EHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDT 209

Query: 307 NQLTGEIPEHLAMGCVSLRSLALSNN 332
           NQL   +P+ +     SL+ + L  N
Sbjct: 210 NQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 39/153 (25%), Positives = 62/153 (40%), Gaps = 20/153 (13%)

Query: 15  FPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGL-CPLV 73
           +     L  L +    I    S        + S+Q L         N  +L+      L 
Sbjct: 72  YQSLSHLSTLILTGNPI---QSLALGAFSGLSSLQKLVAVE----TNLASLENFPIGHLK 124

Query: 74  HLQELHMADNDLRGSLPW--CLANMTSLRILDVSSNQLIGSISSSPLIHLTSIE----DL 127
            L+EL++A N ++ S       +N+T+L  LD+SSN+ I SI  + L  L  +      L
Sbjct: 125 TLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSL 182

Query: 128 ILSDNHFQIPISLEP-LFNHSRLKIFDAENNEI 159
            LS N       ++P  F   RLK    + N++
Sbjct: 183 DLSLNPMN---FIQPGAFKEIRLKELALDTNQL 212

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 75.5 bits (186), Expect = 4e-15
 Identities = 48/257 (18%), Positives = 94/257 (36%), Gaps = 21/257 (8%)

Query: 272 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN 331
            +     N+   ++      +   +N +  +  +N+ +   + + +     ++  L L+ 
Sbjct: 23  FAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SV-QGIQ-YLPNVTKLFLNG 77

Query: 332 NNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLG 391
           N L         NL NL WL L+ N  V ++  SL     L+ L L +N +S  I   L 
Sbjct: 78  NKLT--DIKPLANLKNLGWLFLDENK-VKDL-SSLKDLKKLKSLSLEHNGIS-DIN-GLV 131

Query: 392 NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKN 451
           +L  L  + +  N I     L   +L  L  L + DN IS  +        ++ ++LSKN
Sbjct: 132 HLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKN 188

Query: 452 MLHGQLKEGTFFNCLT-LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQL 510
                + +      L  L +L+L          +    L   + +     +L    P  +
Sbjct: 189 ----HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEII 242

Query: 511 CRLNQLQLLDLSNNNLH 527
                 +  ++  +   
Sbjct: 243 SDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 18/173 (10%)

Query: 7   NGVLSGQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLD 66
           N +   +   + K+L  L++D+ ++  + S L    + +  ++ LSL ++ +S+ +    
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVK-DLSSL----KDLKKLKSLSLEHNGISDIN---- 128

Query: 67  QGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIED 126
            GL  L  L+ L++ +N +       L+ +T L  L +  NQ I  I   PL  LT +++
Sbjct: 129 -GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQ-ISDI--VPLAGLTKLQN 182

Query: 127 LILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSL 179
           L LS NH      L  L     L + +  + E   + I   S       +++ 
Sbjct: 183 LYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 232

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 52/249 (20%), Positives = 102/249 (40%), Gaps = 31/249 (12%)

Query: 43  ESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRIL 102
           ++       +L   SV++           L  + ++   ++D++ S+   +  + ++  L
Sbjct: 21  DAFAETIKDNLKKKSVTDAV-----TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKL 73

Query: 103 DVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAE 162
            ++ N+ +  I   PL +L ++  L L +N  +    L  L +  +LK    E+N I+ +
Sbjct: 74  FLNGNK-LTDI--KPLANLKNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHNGIS-D 126

Query: 163 IIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLEN 222
           I     L     QL+SL L     + IT    L     L+ + L   ++++  P   L  
Sbjct: 127 INGLVHLP----QLESLYLG---NNKITDITVLSRLTKLDTLSLEDNQISDIVP---LAG 176

Query: 223 NTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISM 282
            TKL+ L L  + +       +   K L +L++           +  +  S L V N   
Sbjct: 177 LTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQE----CLNKPINHQSNLVVPNTVK 230

Query: 283 NALDGSIPS 291
           N  DGS+ +
Sbjct: 231 N-TDGSLVT 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 47/291 (16%), Positives = 93/291 (31%), Gaps = 55/291 (18%)

Query: 366 LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI 425
               +      L   S++  +      L  +  II   + I+    ++   L  +  L +
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFL 75

Query: 426 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLT-LMILDLSYNHLNGNIPD 484
           + N ++  +    +   +  + L +N    ++K+ +    L  L  L L +N ++ +I  
Sbjct: 76  NGNKLT-DIKPLANLKNLGWLFLDEN----KVKDLSSLKDLKKLKSLSLEHNGIS-DING 129

Query: 485 RVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE--- 541
            +  L QL  L L +N +       L RL +L  L L +N +   I      T L     
Sbjct: 130 -LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYL 185

Query: 542 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCN 601
             N+ S L+                                          L  L+L   
Sbjct: 186 SKNHISDLRALAGL-----------------------------------KNLDVLELFSQ 210

Query: 602 RLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 652
             +        NL    T+  +  +L    P   S+  + E  ++ ++   
Sbjct: 211 ECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 41/226 (18%), Positives = 84/226 (37%), Gaps = 26/226 (11%)

Query: 220 LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDI-----LSR 274
           ++    + +L L  + L      P+ + K L  L + +N         + D+     L +
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENK--------VKDLSSLKDLKK 113

Query: 275 LTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL 334
           L   ++  N +  S  +   ++  L+ L L NN++T      L+     L +L+L +N +
Sbjct: 114 LKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKIT--DITVLS-RLTKLDTLSLEDNQI 168

Query: 335 EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLT 394
                     LT L  L L  NH + ++ ++L+   +L  L L +     K      NL 
Sbjct: 169 S--DIVPLAGLTKLQNLYLSKNH-ISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLV 224

Query: 395 VLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDF 440
           V   +      +  P  +        +  ++  +    +    + F
Sbjct: 225 VPNTVKNTDGSLVTPEIISD--DGDYEKPNVKWHLPEFTNEVSFIF 268

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 45/309 (14%), Positives = 87/309 (28%), Gaps = 59/309 (19%)

Query: 375 LFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSL 434
                  +                  + K  +   +     +L  +  +  ++++I  S+
Sbjct: 7   TITVPTPIKQIFS--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SV 61

Query: 435 PSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLT-LMILDLSYNHLNGNIPDRVDGLSQLS 493
                   + ++ L+ N    +L +      L  L  L L  N +  ++   +  L +L 
Sbjct: 62  QGIQYLPNVTKLFLNGN----KLTDIKPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLK 115

Query: 494 YLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN----TTLHERYNNGSSL 549
            L L HN +     +    L QL+ L L NN +     +         TL    N  S +
Sbjct: 116 SLSLEHNGISDINGLV--HLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDI 171

Query: 550 QPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPP 609
            P                                       + L  L LS N  I  +  
Sbjct: 172 VPLAG-----------------------------------LTKLQNLYLSKNH-ISDLRA 195

Query: 610 QIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFS 669
            +  L  +  L L          +  SNL    ++  +   L    P  + +       +
Sbjct: 196 -LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TPEIISDDGDYEKPN 252

Query: 670 VAYNNLSGK 678
           V ++     
Sbjct: 253 VKWHLPEFT 261

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.1 bits (182), Expect = 2e-14
 Identities = 45/282 (15%), Positives = 89/282 (31%), Gaps = 45/282 (15%)

Query: 251 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLT 310
           R+    ++     IP    D+          +  L      +F     L+ +++S N + 
Sbjct: 12  RVFLCQESKVT-EIP---SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 311 GEIPEHLAMGCVSLRSLALSNNN----LEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ-S 365
             I   +      L  + +   N    +    F    NL NL +L +        +P   
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ---NLPNLQYLLISNTGIK-HLPDVH 123

Query: 366 LSKCSSLQGLFLSNNSLSGKIP-RWLGNLTV-LRHIIMPKNHIEGPIPLEFCQLRILQIL 423
                    L + +N     I       L+     + + KN I+      F   ++ ++ 
Sbjct: 124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELN 183

Query: 424 DISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP 483
              +NN+                         +L    F      +ILD+S   ++ ++P
Sbjct: 184 LSDNNNLE------------------------ELPNDVFHGASGPVILDISRTRIH-SLP 218

Query: 484 DRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNN 524
               + L +L        NL+ ++P  L +L  L    L+  
Sbjct: 219 SYGLENLKKLRARST--YNLK-KLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 68.3 bits (167), Expect = 2e-12
 Identities = 51/300 (17%), Positives = 80/300 (26%), Gaps = 77/300 (25%)

Query: 361 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLE-FCQLRI 419
           EIP  L    +   L      L             L  I + +N +   I  + F  L  
Sbjct: 23  EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 420 LQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN 479
           L  + I   N    +                           F N   L  L +S   + 
Sbjct: 81  LHEIRIEKANNLLYINP-----------------------EAFQNLPNLQYLLISNTGIK 117

Query: 480 GNIPDRV-DGLSQLSYLILAHNN----LEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCF 534
            ++PD       Q   L +  N     +E    + L    +  +L L+ N +     S F
Sbjct: 118 -HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--FESVILWLNKNGIQEIHNSAF 174

Query: 535 DNTTLHE----RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVP 590
           + T L E      NN   L                      + F   +            
Sbjct: 175 NGTQLDELNLSDNNNLEELPN--------------------DVFHGASG----------- 203

Query: 591 SLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYN 649
                LD+S  R I  +P     NL K++  +  +             L  +    L+Y 
Sbjct: 204 --PVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPT----LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.1 bits (156), Expect = 5e-11
 Identities = 40/257 (15%), Positives = 77/257 (29%), Gaps = 48/257 (18%)

Query: 420 LQILDISDNNISGSLPSC--YDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLS-YN 476
              L      +   +       F  +E++ +S+N +   ++   F N   L  + +   N
Sbjct: 32  AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 477 HLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPS-CF 534
           +L   I       L  L YL++++  ++    +      Q  LLD+ +N     I    F
Sbjct: 91  NLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 535 DN-----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRV 589
                    L    N    +                       +F+ T            
Sbjct: 150 VGLSFESVILWLNKNGIQEIHN--------------------SAFNGTQ----------- 178

Query: 590 PSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSY 648
              L  L+LS N  +  +P  +    +    L++S   +         NL+ + +     
Sbjct: 179 ---LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 235

Query: 649 NKLSWKIPYQLVELNTL 665
            K       +LV L   
Sbjct: 236 LK-KLPTLEKLVALMEA 251

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 40/265 (15%), Positives = 79/265 (29%), Gaps = 43/265 (16%)

Query: 97  TSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAEN 156
            +   L     + +  I          +E + +S N     I  +   N  +L     E 
Sbjct: 30  RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 157 NEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFP 216
                              L  +            P+   N  +L+Y+ +S+  + +  P
Sbjct: 89  AN----------------NLLYIN-----------PEAFQNLPNLQYLLISNTGI-KHLP 120

Query: 217 NWLLENNTKLRQLSLV-NDSLV----GPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDI 271
           +    ++ +   L +  N ++       F        +  +L ++KN  Q  I     + 
Sbjct: 121 DVHKIHSLQKVLLDIQDNINIHTIERNSFV---GLSFESVILWLNKNGIQ-EIHNSAFNG 176

Query: 272 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN 331
                +     N L+      F   +    LD+S  ++   +P +       LR  A S 
Sbjct: 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLR--ARST 233

Query: 332 NNLEGHMFSRNFNLTNLIWLQLEGN 356
            NL+         L  L+   L   
Sbjct: 234 YNLK--KLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.2 bits (133), Expect = 4e-08
 Identities = 33/245 (13%), Positives = 64/245 (26%), Gaps = 59/245 (24%)

Query: 443 IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNN 501
             ++      L   +++G F     L  +++S N +   I   V   L +L  + +   N
Sbjct: 32  AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 502 LEGEVPIQLCR-LNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMG 560
               +  +  + L  LQ L +SN  +                      L           
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGI--------------------KHLPDV-------- 122

Query: 561 GMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI--GNLTKIQ 618
                           + +                LD+  N  I  I      G   +  
Sbjct: 123 ------------HKIHSLQ-------------KVLLDIQDNINIHTIERNSFVGLSFESV 157

Query: 619 TLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGK 678
            L L+ N +     S F+  +  E      N L           +   +  ++   +   
Sbjct: 158 ILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-S 216

Query: 679 IPERA 683
           +P   
Sbjct: 217 LPSYG 221

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.5 bits (126), Expect = 3e-07
 Identities = 40/261 (15%), Positives = 89/261 (34%), Gaps = 54/261 (20%)

Query: 9   VLSGQGFPHFKSLKELYMDDARIALNTSFLQIIGES----MPSIQYLSLSNSSVSNNSRT 64
           V+    F  F  L+++ +    +      L++I       +P +  + +  +   NN   
Sbjct: 44  VIQKGAFSGFGDLEKIEISQNDV------LEVIEADVFSNLPKLHEIRIEKA---NNLLY 94

Query: 65  LDQGLC-PLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTS 123
           ++      L +LQ L +++  ++        +     +LD+  N  I +I  +  + L+ 
Sbjct: 95  INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF 154

Query: 124 -IEDLILSDNHFQIPISLEP-LFNHSRL-KIFDAENNEINAEIIESHSLTTPNFQLQSLL 180
               L L+ N  Q    +    FN ++L ++  ++NN +  E + +              
Sbjct: 155 ESVILWLNKNGIQ---EIHNSAFNGTQLDELNLSDNNNL--EELPNDV------------ 197

Query: 181 LSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPF 240
                          +       + +S  ++    P++ LEN  KLR  S  N   +   
Sbjct: 198 --------------FHGASGPVILDISRTRI-HSLPSYGLENLKKLRARSTYNLKKLPTL 242

Query: 241 RLPIHSHKQLRLLDVSKNNFQ 261
                    L    ++     
Sbjct: 243 ----EKLVALMEASLT-YPSH 258

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.4 bits (173), Expect = 5e-14
 Identities = 25/161 (15%), Positives = 56/161 (34%), Gaps = 8/161 (4%)

Query: 272 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN 331
           ++ LT   ++   +   + +     + ++ L ++N   T      ++ G  +L  L +  
Sbjct: 43  MNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHATN--YNPIS-GLSNLERLRIMG 97

Query: 332 NNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLG 391
            ++          LT+L  L +  +     I   ++    +  + LS N     I   L 
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LK 156

Query: 392 NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISG 432
            L  L+ + +  + +     +E      L  L      I G
Sbjct: 157 TLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.3 bits (165), Expect = 7e-13
 Identities = 24/160 (15%), Positives = 59/160 (36%), Gaps = 13/160 (8%)

Query: 3   NCEVNGVLSGQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNS 62
                 V    G  +  ++K+L +++     N + +      + +++ L +    V+++ 
Sbjct: 50  TLANINVTDLTGIEYAHNIKDLTINNIHAT-NYNPI----SGLSNLERLRIMGKDVTSDK 104

Query: 63  RTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLT 122
                 L  L  L  L ++ +    S+   +  +  +  +D+S N  I  I   PL  L 
Sbjct: 105 IP---NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--MPLKTLP 159

Query: 123 SIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAE 162
            ++ L +  +          + +  +L    A +  I  +
Sbjct: 160 ELKSLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 27/183 (14%), Positives = 62/183 (33%), Gaps = 31/183 (16%)

Query: 344 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 403
            + +L ++ L   + V ++   +    +++ L ++N   +   P  +  L+ L  + +  
Sbjct: 42  QMNSLTYITLANIN-VTDL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMG 97

Query: 404 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF 463
             +          L  L +LDIS +    S+ +                           
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT------------------------KIN 133

Query: 464 NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSN 523
               +  +DLSYN    +I   +  L +L  L +  + +     I+     +L  L   +
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFS 190

Query: 524 NNL 526
             +
Sbjct: 191 QTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 1/84 (1%)

Query: 593 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 652
           L  L +    +     P +  LT +  L++SH+     I +  + L  + S+DLSYN   
Sbjct: 90  LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149

Query: 653 WKIPYQLVELNTLAVFSVAYNNLS 676
             I   L  L  L   ++ ++ + 
Sbjct: 150 TDIM-PLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 593 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 652
           +  L ++      +  P I  L+ ++ L +   ++        S L ++  LD+S++   
Sbjct: 68  IKDLTINNIH-ATNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 653 WKIPYQLVELNTLAVFSVAYNNLSGKI 679
             I  ++  L  +    ++YN     I
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 30/224 (13%), Positives = 67/224 (29%), Gaps = 73/224 (32%)

Query: 94  ANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFD 153
           A M SL  + +++   +  ++   + +  +I+DL +++ H     +  P+   S L+   
Sbjct: 41  AQMNSLTYITLANIN-VTDLT--GIEYAHNIKDLTINNIHAT---NYNPISGLSNLERLR 94

Query: 154 AENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNE 213
               ++ ++ I +                                               
Sbjct: 95  IMGKDVTSDKIPN----------------------------------------------- 107

Query: 214 EFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDI-- 271
                 L   T L  L + + +        I++  ++  +D+S N         I DI  
Sbjct: 108 ------LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG-------AITDIMP 154

Query: 272 ---LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGE 312
              L  L   NI  + +         +   L  L   +  + G+
Sbjct: 155 LKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 21/166 (12%), Positives = 60/166 (36%), Gaps = 12/166 (7%)

Query: 392 NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKN 451
                 + ++ ++       +   Q+  L  + +++ N++  L        I+ + ++  
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT-DLTGIEYAHNIKDLTINNI 76

Query: 452 MLHGQLKEGTFFNCLT-LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQL 510
                       + L+ L  L +    +  +    + GL+ L+ L ++H+  +  +  ++
Sbjct: 77  ----HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 511 CRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE---RYNNGSSLQPFE 553
             L ++  +DLS N     I        L     +++     +  E
Sbjct: 133 NTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIE 178

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 29/220 (13%), Positives = 65/220 (29%), Gaps = 51/220 (23%)

Query: 416 QLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLT-LMILDLS 474
             +      +  ++ +    +      +  + L+       + + T       +  L ++
Sbjct: 21  TFKAYLNGLLGQSSTANITEA--QMNSLTYITLANI----NVTDLTGIEYAHNIKDLTIN 74

Query: 475 YNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCF 534
             H     P  + GLS L  L +   ++  +    L  L  L LLD+S++     I +  
Sbjct: 75  NIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 535 DN----TTLHERYNNG-SSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRV 589
           +      ++   YN   + + P +T                L                  
Sbjct: 133 NTLPKVNSIDLSYNGAITDIMPLKT----------------LPE---------------- 160

Query: 590 PSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAG 629
              L  L++  +  +      I +  K+  L      + G
Sbjct: 161 ---LKSLNIQFDG-VHDYRG-IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 14/89 (15%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 593 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 652
           L+ + L+    +  +   I     I+ L +++ +      +  S L N+E L +    ++
Sbjct: 46  LTYITLANIN-VTDLTG-IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVT 101

Query: 653 WKIPYQLVELNTLAVFSVAYNNLSGKIPE 681
                 L  L +L +  ++++     I  
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILT 130

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 73.3 bits (180), Expect = 5e-14
 Identities = 45/184 (24%), Positives = 71/184 (38%), Gaps = 34/184 (18%)

Query: 361 EIPQSLSKCSSLQGLFLSNNSLSGKIPRW-LGNLTVLRHIIMPKNHIEGPIPLEFCQLRI 419
            +PQSL   S    L LS+N+LS     W    LT L  +++  NH+       F  +  
Sbjct: 32  NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89

Query: 420 LQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN 479
           L+ LD+S N++  +L                           F +   L +L L  NH+ 
Sbjct: 90  LRYLDLSSNHLH-TLDE-----------------------FLFSDLQALEVLLLYNNHIV 125

Query: 480 GNIPDRV-DGLSQLSYLILAHNNLEGEVP----IQLCRLNQLQLLDLSNNNLHGHIPSCF 534
             +     + ++QL  L L+ N +    P        +L +L LLDLS+N L     +  
Sbjct: 126 -VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDL 183

Query: 535 DNTT 538
               
Sbjct: 184 QKLP 187

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.5 bits (170), Expect = 9e-13
 Identities = 43/157 (27%), Positives = 63/157 (40%), Gaps = 14/157 (8%)

Query: 250 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPS-SFGNMNFLQFLDLSNNQ 308
             LLD+S NN            L+ L    +S N L+  I S +F  +  L++LDLS+N 
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH 99

Query: 309 LTGEIPEHLAMGCVSLRSLALSNNNL---EGHMFSRNFNLTNLIWLQLEGNHFVGEIP-- 363
           L   + E L     +L  L L NN++   + + F    ++  L  L L  N      P  
Sbjct: 100 LH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE---DMAQLQKLYLSQNQIS-RFPVE 154

Query: 364 --QSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRH 398
             +  +K   L  L LS+N L       L  L     
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 63.3 bits (154), Expect = 9e-11
 Identities = 63/259 (24%), Positives = 90/259 (34%), Gaps = 53/259 (20%)

Query: 300 QFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL----EGHMFSRNFNLTNLIWLQLEG 355
             L  S  QL   +P+ L         L LS+NNL         +    LTNL  L L  
Sbjct: 21  NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPT---RLTNLHSLLLSH 73

Query: 356 NHFVGEIP-QSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLE- 413
           NH +  I  ++     +L+ L LS+N L         +L  L  +++  NHI   +    
Sbjct: 74  NH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNA 131

Query: 414 FCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCL---TLMI 470
           F  +  LQ L +S N IS   P                            +      LM+
Sbjct: 132 FEDMAQLQKLYLSQNQIS-RFP-----------------------VELIKDGNKLPKLML 167

Query: 471 LDLSYNHLNGNIPDRVDGLSQLSYLILA-HNNLEGEVPIQ-LCRL----NQLQLLDLSNN 524
           LDLS N L       +  L       L  HNN     P++  C+L    +  Q   LS+ 
Sbjct: 168 LDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN-----PLECDCKLYQLFSHWQYRQLSSV 222

Query: 525 NLHGHIPSCFDNTTLHERY 543
                   C  +  LH  +
Sbjct: 223 MDFQEDLYCMHSKKLHNIF 241

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 40/189 (21%), Positives = 61/189 (32%), Gaps = 33/189 (17%)

Query: 200 DLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNN 259
               + LSH  ++     W     T L  L L              SH  L  +      
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLL--------------SHNHLNFIS--SEA 83

Query: 260 FQGHIPLEIGDILSRLTVFNISMNALDGSIPS-SFGNMNFLQFLDLSNNQLTGEIPEHLA 318
           F           +  L   ++S N L  ++    F ++  L+ L L NN +   +  +  
Sbjct: 84  FVP---------VPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAF 132

Query: 319 MGCVSLRSLALSNNNL---EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSL--Q 373
                L+ L LS N +      +      L  L+ L L  N         L K  +    
Sbjct: 133 EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192

Query: 374 GLFLSNNSL 382
           GL+L NN L
Sbjct: 193 GLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.9 bits (145), Expect = 1e-09
 Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 11/140 (7%)

Query: 299 LQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL---EGHMFSRNFNLTNLIWLQLEG 355
              LDLS+N L+    E       +L SL LS+N+L       F     + NL +L L  
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV---PVPNLRYLDLSS 97

Query: 356 NHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLE-- 413
           NH         S   +L+ L L NN +         ++  L+ + + +N I    P+E  
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELI 156

Query: 414 --FCQLRILQILDISDNNIS 431
               +L  L +LD+S N + 
Sbjct: 157 KDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 40/200 (20%), Positives = 70/200 (35%), Gaps = 51/200 (25%)

Query: 516 LQLLDLSNNNLHGHIPS--CFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQ 569
             LLDLS+NNL   + +           +L   +N+ + +                    
Sbjct: 41  TALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISS------------------ 81

Query: 570 ILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLA 628
             E+F                  L  LDLS N L   +   +  +L  ++ L L +N++ 
Sbjct: 82  --EAFVPVPN-------------LRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIV 125

Query: 629 GPIPSTFSNLRNIESLDLSYNKLSWKIP----YQLVELNTLAVFSVAYNNLSGKIPERAA 684
               + F ++  ++ L LS N++S   P        +L  L +  ++ N L  K+P    
Sbjct: 126 VVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDL 183

Query: 685 QFATFNESSY---EGNPFLC 701
           Q       +      NP  C
Sbjct: 184 QKLPAWVKNGLYLHNNPLEC 203

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 10/100 (10%)

Query: 589 VPSLLSGLDLSCNRLIGHIPPQI--GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDL 646
           +PS  + LDLS N  +  +  +     LT + +L LSHN+L       F  + N+  LDL
Sbjct: 37  LPSYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95

Query: 647 SYNKLS---WKIPYQLVELNTLAVFSVAYNNLSGKIPERA 683
           S N L      +   L  L  L    +  N++   +   A
Sbjct: 96  SSNHLHTLDEFLFSDLQALEVL---LLYNNHIV-VVDRNA 131

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 12/118 (10%)

Query: 46  PSIQYLSLSNSSVSNNSRTLDQG--LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILD 103
                L LS+    NN   L        L +L  L ++ N L          + +LR LD
Sbjct: 39  SYTALLDLSH----NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94

Query: 104 VSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEP-LFNH-SRLKIFDAENNEI 159
           +SSN L  ++       L ++E L+L +NH      ++   F   ++L+      N+I
Sbjct: 95  LSSNHL-HTLDEFLFSDLQALEVLLLYNNHIV---VVDRNAFEDMAQLQKLYLSQNQI 148

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 29/140 (20%), Positives = 58/140 (41%), Gaps = 18/140 (12%)

Query: 15  FPHFKSLKELYMDDARI-ALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQG-LCPL 72
           F    +L+ L +    +  L+          + +++ L L N    N+   +D+     +
Sbjct: 84  FVPVPNLRYLDLSSNHLHTLDEFLFS----DLQALEVLLLYN----NHIVVVDRNAFEDM 135

Query: 73  VHLQELHMADNDLRGSLPW----CLANMTSLRILDVSSNQLIGSISSSPLIHLTSI--ED 126
             LQ+L+++ N +    P         +  L +LD+SSN+ +  +  + L  L +     
Sbjct: 136 AQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKNG 193

Query: 127 LILSDNHFQIPISLEPLFNH 146
           L L +N  +    L  LF+H
Sbjct: 194 LYLHNNPLECDCKLYQLFSH 213

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.9 bits (174), Expect = 1e-13
 Identities = 55/254 (21%), Positives = 79/254 (31%), Gaps = 59/254 (23%)

Query: 292 SFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWL 351
               +     ++     LT  +P  L         L LS N L     +     T L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 352 QLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIP 411
            L+    + ++         L  L LS+N L                           +P
Sbjct: 61  NLDRAE-LTKLQ-VDGTLPVLGTLDLSHNQLQS-------------------------LP 93

Query: 412 LEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMIL 471
           L    L  L +LD+S N ++ SLP                        G       L  L
Sbjct: 94  LLGQTLPALTVLDVSFNRLT-SLP-----------------------LGALRGLGELQEL 129

Query: 472 DLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLC-RLNQLQLLDLSNNNLHGH 529
            L  N L   +P  +     +L  L LA+NNL  E+P  L   L  L  L L  N+L+  
Sbjct: 130 YLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTI 187

Query: 530 IPSCFDNTTLHERY 543
               F +  L   +
Sbjct: 188 PKGFFGSHLLPFAF 201

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 44/185 (23%), Positives = 70/185 (37%), Gaps = 14/185 (7%)

Query: 224 TKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMN 283
                L L  + L       +  + +L  L++ +        L++   L  L   ++S N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK---LQVDGTLPVLGTLDLSHN 87

Query: 284 ALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN---NLEGHMFS 340
            L  S+P     +  L  LD+S N+LT  +P     G   L+ L L  N    L   + +
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 341 RNFNLTNLIWLQLEGNHFVGEIPQSL-SKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHI 399
                  L  L L  N+   E+P  L +   +L  L L  NSL   IP+      +L   
Sbjct: 146 P---TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFA 200

Query: 400 IMPKN 404
            +  N
Sbjct: 201 FLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 43/191 (22%), Positives = 67/191 (35%), Gaps = 42/191 (21%)

Query: 467 TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 526
              IL LS N L       +   ++L+ L L    L  ++ +    L  L  LDLS+N L
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQL 89

Query: 527 HGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSIT 582
              +P         T L   +N  +SL                       +     +   
Sbjct: 90  Q-SLPLLGQTLPALTVLDVSFNRLTSLPL--------------------GALRGLGE--- 125

Query: 583 YTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNI 641
                     L  L L  N L   +PP +     K++ L+L++NNL        + L N+
Sbjct: 126 ----------LQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174

Query: 642 ESLDLSYNKLS 652
           ++L L  N L 
Sbjct: 175 DTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 39/189 (20%), Positives = 65/189 (34%), Gaps = 18/189 (9%)

Query: 270 DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLAL 329
           D+    T+ ++S N L     ++      L  L+L   +LT ++     +    L +L L
Sbjct: 28  DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTL--PVLGTLDL 84

Query: 330 SNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEIPQSLS-----KCSSLQGLFLSNNSLS 383
           S+N L           L  L  L +  N        SL          LQ L+L  N L 
Sbjct: 85  SHNQL--QSLPLLGQTLPALTVLDVSFNRL-----TSLPLGALRGLGELQELYLKGNELK 137

Query: 384 GKIPRWLGNLTVLRHIIMPKNHIEGPIPLE-FCQLRILQILDISDNNISGSLPSCYDFVC 442
              P  L     L  + +  N++   +P      L  L  L + +N++       +    
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196

Query: 443 IEQVHLSKN 451
           +    L  N
Sbjct: 197 LPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 49/252 (19%), Positives = 81/252 (32%), Gaps = 61/252 (24%)

Query: 463 FNCLT-LMILDLSYNHLN---GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQL 518
            + +   + ++    +L     ++P         + L L+ N L       L    +L  
Sbjct: 6   VSKVASHLEVNCDKRNLTALPPDLP------KDTTILHLSENLLYTFSLATLMPYTRLTQ 59

Query: 519 LDLSNNNLHGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESF 574
           L+L    L   +           TL   +N   SL                         
Sbjct: 60  LNLDRAEL-TKLQV-DGTLPVLGTLDLSHNQLQSLPL---------------------LG 96

Query: 575 DFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPS 633
                             L+ LD+S NR +  +P      L ++Q L L  N L    P 
Sbjct: 97  QTLPA-------------LTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPG 142

Query: 634 TFSNLRNIESLDLSYNKLSWKIPY----QLVELNTLAVFSVAYNNLSGKIPERAAQFATF 689
             +    +E L L+ N L+ ++P      L  L+TL +     N+L   IP+        
Sbjct: 143 LLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE---NSLYT-IPKGFFGSHLL 197

Query: 690 NESSYEGNPFLC 701
             +   GNP+LC
Sbjct: 198 PFAFLHGNPWLC 209

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 33/146 (22%), Positives = 57/146 (39%), Gaps = 15/146 (10%)

Query: 18  FKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQE 77
            K    L++ +  +    +F          +  L+L          T  Q    L  L  
Sbjct: 30  PKDTTILHLSENLL---YTFSLATLMPYTRLTQLNLDR-----AELTKLQVDGTLPVLGT 81

Query: 78  LHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIP 137
           L ++ N L+ SLP     + +L +LDVS N+ + S+    L  L  +++L L  N  +  
Sbjct: 82  LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELK-- 137

Query: 138 ISLEP-LFNH-SRLKIFDAENNEINA 161
            +L P L     +L+     NN +  
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNNLTE 162

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 53/236 (22%), Positives = 74/236 (31%), Gaps = 62/236 (26%)

Query: 73  VHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDN 132
                LH+++N L       L   T L  L++   +L           L  +  L LS N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL---TKLQVDGTLPVLGTLDLSHN 87

Query: 133 HFQIPISLEPLFNH-SRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITF 191
             Q   SL  L      L + D   N                 +L S  L  G   G+  
Sbjct: 88  QLQ---SLPLLGQTLPALTVLDVSFN-----------------RLTS--LPLGALRGLGE 125

Query: 192 PKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLR 251
            + LY    L+   L  +      P  LL    KL +LSL N                  
Sbjct: 126 LQELY----LKGNELKTL------PPGLLTPTPKLEKLSLAN------------------ 157

Query: 252 LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNN 307
                 NN    +P  + + L  L    +  N+L  +IP  F   + L F  L  N
Sbjct: 158 ------NNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 43/213 (20%), Positives = 81/213 (38%), Gaps = 20/213 (9%)

Query: 299 LQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN----LEGHMFSRNFNLTNLIWLQLE 354
            Q L L    L   IP H      ++  + +S +     LE H F    NL+ +  +++ 
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY---NLSKVTHIEIR 88

Query: 355 GNHFVGEIPQS-LSKCSSLQGLFLSNNSLSGKIP--RWLGNLTVLRHIIMPKNHIEGPIP 411
               +  I    L +   L+ L + N  L    P    + +  +   + +  N     IP
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIP 147

Query: 412 LE-FCQLR-ILQILDISDNNISGSLPSC-YDFVCIEQVHLSKNMLHGQLKEGTFFNCLT- 467
           +  F  L      L + +N  + S+    ++   ++ V+L+KN     + +  F    + 
Sbjct: 148 VNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG 206

Query: 468 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHN 500
             +LD+S   +   +P    GL  L  LI  + 
Sbjct: 207 PSLLDVSQTSVT-ALPS--KGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.0 bits (159), Expect = 7e-12
 Identities = 35/290 (12%), Positives = 79/290 (27%), Gaps = 87/290 (30%)

Query: 369 CSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDN 428
           C   +   ++   +  +IP    +   L+   + + H+       F  L  +  + +S +
Sbjct: 10  CHQEEDFRVTCKDIQ-RIPSLPPSTQTLK---LIETHLRTIPSHAFSNLPNISRIYVSID 65

Query: 429 NISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-D 487
                L S                        +F+N   +  +++        I      
Sbjct: 66  VTLQQLES-----------------------HSFYNLSKVTHIEIRNTRNLTYIDPDALK 102

Query: 488 GLSQLSYLILAHNNLEGEVP--IQLCRLNQLQLLDLSNNNLHGHI-PSCFDNTTLHERYN 544
            L  L +L + +  L+   P   ++   +   +L++++N     I  + F          
Sbjct: 103 ELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQG-------- 153

Query: 545 NGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLI 604
                                                       + +    L L  N   
Sbjct: 154 --------------------------------------------LCNETLTLKLYNNG-F 168

Query: 605 GHIPPQIGNLTKIQTLNLSHNNLAGPIPS-TFSNLRN-IESLDLSYNKLS 652
             +     N TK+  + L+ N     I    F  + +    LD+S   ++
Sbjct: 169 TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 36/193 (18%), Positives = 81/193 (41%), Gaps = 9/193 (4%)

Query: 250 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPS-SFGNMNFLQFLDLSNNQ 308
            + L + + + +  IP      L  ++   +S++     + S SF N++ +  +++ N +
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 309 LTGEIPEHLAMGCVSLRSLALSNNNLEG-HMFSRNFNLTNLIWLQLEGNHFVGEIPQSL- 366
               I          L+ L + N  L+     ++ ++      L++  N ++  IP +  
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 367 -SKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKN-HIEGPIPLEFCQLR-ILQIL 423
              C+    L L NN  +  +  +  N T L  + + KN ++       F  +     +L
Sbjct: 152 QGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL 210

Query: 424 DISDNNISGSLPS 436
           D+S  +++ +LPS
Sbjct: 211 DVSQTSVT-ALPS 222

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 5/95 (5%)

Query: 593 LSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPS-TFSNLRNIESLDLSYNK 650
           +S + +S +  +  +      NL+K+  + + +      I       L  ++ L +    
Sbjct: 57  ISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG 116

Query: 651 LSWKIP--YQLVELNTLAVFSVAYNNLSGKIPERA 683
           L    P   ++   +   +  +  N     IP  A
Sbjct: 117 LK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 20/141 (14%), Positives = 55/141 (39%), Gaps = 9/141 (6%)

Query: 46  PSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPW-CLANMTSLRILD 103
           PS Q L L       + RT+       L ++  ++++ +     L      N++ +  ++
Sbjct: 31  PSTQTLKLIE----THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIE 86

Query: 104 VSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFD-AENNEINAE 162
           + + + +  I    L  L  ++ L + +   ++   L  +++     I +  +N  +   
Sbjct: 87  IRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYM--T 144

Query: 163 IIESHSLTTPNFQLQSLLLSS 183
            I  ++      +  +L L +
Sbjct: 145 SIPVNAFQGLCNETLTLKLYN 165

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.9 bits (170), Expect = 2e-12
 Identities = 87/538 (16%), Positives = 180/538 (33%), Gaps = 124/538 (23%)

Query: 19  KSLKELYMDDARIALNTSFL------QIIGESMPSIQYLSLSNSSVSNN--------SR- 63
           + + + ++++  + +N  FL      +    SM +  Y+   +   ++N        SR 
Sbjct: 76  EEMVQKFVEEV-LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134

Query: 64  ----TLDQGLCPLVHLQE--LH-MADNDLRGSLPWCLANMT--SLRILDVSSNQL----I 110
                L Q L  L   +   +  +      GS    +A     S ++      ++    +
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVL-----GSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189

Query: 111 GSISSSPLIHLTSIEDL---------ILSDNHFQIPISLEPLFNHSRLKIFDAENNE--- 158
            + +S   + L  ++ L           SD+   I + +  +    R  +          
Sbjct: 190 KNCNSPETV-LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 159 I-----NAEIIESHSLTTPNFQLQS-LLLSSGYRDGITFPKFLYNQH-DLEYVR--LSHI 209
           +     NA+   +       F L   +LL++ ++    F       H  L++    L+  
Sbjct: 249 VLLNVQNAKAWNA-------FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 210 KMNEEFPNWLLENNTKLRQ---------LSLVNDSL-VGPFR----LPIHSHKQLRLLDV 255
           ++      +L      L +         LS++ +S+  G         ++  K   +++ 
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 256 SKNNFQGHIPLEIGDILSRLTVF----NISMNAL-------DGSIPSSFGNMNFLQ---F 301
           S N  +   P E   +  RL+VF    +I    L         S       +N L     
Sbjct: 362 SLNVLE---PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV--VNKLHKYSL 416

Query: 302 LDLSNNQLTGEIPE-HLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEG---NH 357
           ++    + T  IP  +L +        AL  + ++ +   + F+  +LI   L+    +H
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476

Query: 358 FV---GEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEF 414
                  I     + +  + +FL    L  KI          RH     N     +    
Sbjct: 477 IGHHLKNIEHP-ERMTLFRMVFLDFRFLEQKI----------RHDSTAWNASGSILNT-L 524

Query: 415 CQLRILQ--ILDISDNNISGSLPSCYDFV--CIEQVHLSK--NMLHGQL--KEGTFFN 464
            QL+  +  I D +D      + +  DF+    E +  SK  ++L   L  ++   F 
Sbjct: 525 QQLKFYKPYICD-NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.4 bits (148), Expect = 1e-09
 Identities = 94/668 (14%), Positives = 193/668 (28%), Gaps = 220/668 (32%)

Query: 136 IPISLEPLFNHSRLK-IFDAENNEINAEIIESHSLTTPNFQLQS-----LLLSSGYRDGI 189
           + +  +   ++   K + D   + ++ E I+ H + + +    +      LLS       
Sbjct: 22  LSVFEDAFVDNFDCKDVQDMPKSILSKEEID-HIIMSKDAVSGTLRLFWTLLSKQEE--- 77

Query: 190 TFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLEN-NTKLRQLSLVNDSLVGPFRLPIHSHK 248
              KF+     + Y              +L+    T+ RQ S++    +   R  +++  
Sbjct: 78  MVQKFVEEVLRINY-------------KFLMSPIKTEQRQPSMMTRMYI-EQRDRLYNDN 123

Query: 249 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ 308
           Q+     +K N            +SRL  +     AL                L+L   +
Sbjct: 124 QV----FAKYN------------VSRLQPYLKLRQAL----------------LELRPAK 151

Query: 309 ---LTGEIPEHLAM-GC--VSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGN----HF 358
              + G       + G     +      +  ++  M  + F      WL L  N      
Sbjct: 152 NVLIDG-------VLGSGKTWVALDVCLSYKVQCKMDFKIF------WLNL-KNCNSPET 197

Query: 359 VGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNL-TVLRHIIMPKNHIEGPIPL-EFCQ 416
           V E+ Q L     +   + S +  S  I   + ++   LR ++  K +    + L     
Sbjct: 198 VLEMLQKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255

Query: 417 LRILQILDIS--------DNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKE--GTFFNC- 465
            +     ++S           ++  L +      I   H S  +   ++K     + +C 
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH-ISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 466 -------------LTL--------------------------MILDLSYNHL-------- 478
                          L                           I++ S N L        
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 479 ---------NGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGH 529
                    + +IP  +     LS  ++  + ++ +V + + +L++  L++         
Sbjct: 375 FDRLSVFPPSAHIPTIL-----LS--LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427

Query: 530 IPSCF--------DNTTLH----ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFT 577
           IPS +        +   LH    + YN   +                D     L+ + ++
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD------------DLIPPYLDQYFYS 475

Query: 578 TKSITY----TYQGRVPSLLSG--LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPI 631
              I +           +L     LD    R +           KI+  + + N  +G I
Sbjct: 476 --HIGHHLKNIEHPERMTLFRMVFLDF---RFLE---------QKIRHDSTAWNA-SGSI 520

Query: 632 PSTFSNLRN----IESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE-RAAQF 686
            +T   L+     I   D  Y +L          +N +  F                 + 
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERL----------VNAILDFLPKIEENLICSKYTDLLRI 570

Query: 687 ATFNESSY 694
           A   E   
Sbjct: 571 ALMAEDEA 578

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 66.6 bits (163), Expect = 5e-12
 Identities = 49/280 (17%), Positives = 90/280 (32%), Gaps = 55/280 (19%)

Query: 390 LGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLS 449
              L     I   K+++   +      L  +  L      ++ ++        +  + L 
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELK 71

Query: 450 KNMLHGQLKEGTFFNCLT-LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPI 508
            N    Q+ +      LT +  L+LS N L  N+   + GL  +  L L    +    P 
Sbjct: 72  DN----QITDLAPLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITDVTP- 124

Query: 509 QLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE---RYNNGSSLQPFETSFVIMGGMDVD 565
            L  L+ LQ+L L  N +  +I      T L          S L P              
Sbjct: 125 -LAGLSNLQVLYLDLNQIT-NISPLAGLTNLQYLSIGNAQVSDLTPLANL---------- 172

Query: 566 PKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN 625
                                    S L+ L    N+ I  I P + +L  +  ++L +N
Sbjct: 173 -------------------------SKLTTLKADDNK-ISDISP-LASLPNLIEVHLKNN 205

Query: 626 NLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTL 665
            ++   P   +N  N+  + L+   ++ +  +    L   
Sbjct: 206 QISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVP 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 51/313 (16%), Positives = 100/313 (31%), Gaps = 57/313 (18%)

Query: 344 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 403
            L N I +    ++    +    +    +  L      ++      +  L  L  + +  
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72

Query: 404 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF 463
           N I    PL+   L  +  L++S N +  ++ +      I+ + L+   +          
Sbjct: 73  NQITDLAPLK--NLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQITDV---TPLA 126

Query: 464 NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSN 523
               L +L L  N +  NI   + GL+ L YL + +  +    P+    L++L  L   +
Sbjct: 127 GLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTPLA--NLSKLTTLKADD 182

Query: 524 NNLHGHIPSCFDNTTLHE---RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKS 580
           N +   I        L E   + N  S + P   +                         
Sbjct: 183 NKIS-DISPLASLPNLIEVHLKNNQISDVSPLANT------------------------- 216

Query: 581 ITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPI-PSTFSNLR 639
                     S L  + L+   +       +     +   N+       PI P+T S+  
Sbjct: 217 ----------SNLFIVTLTNQTITN---QPVFYNNNLVVPNVVKGPSGAPIAPATISDNG 263

Query: 640 NIESLDLSYNKLS 652
              S +L++N  S
Sbjct: 264 TYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 59/301 (19%), Positives = 114/301 (37%), Gaps = 27/301 (8%)

Query: 140 LEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQH 199
           + P    +      A  + +  + +    L      + +L        G+T  + +   +
Sbjct: 12  IFPDPALANAIKIAAGKSNVT-DTVTQADLD----GITTLSAFG---TGVTTIEGVQYLN 63

Query: 200 DLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNN 259
           +L  + L   ++ +  P   L+N TK+ +L L  + L       I   + ++ LD++   
Sbjct: 64  NLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQ 118

Query: 260 FQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAM 319
                PL     LS L V  + +N +  +  S    +  LQ+L + N Q++   P  LA 
Sbjct: 119 ITDVTPLAG---LSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDLTP--LA- 170

Query: 320 GCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSN 379
               L +L   +N +     S   +L NLI + L+ N      P  L+  S+L  + L+N
Sbjct: 171 NLSKLTTLKADDNKIS--DISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

Query: 380 NSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYD 439
            +++ +   +  NL V    ++         P            +++ N  S      Y 
Sbjct: 227 QTITNQPVFYNNNLVVP--NVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYT 284

Query: 440 F 440
           F
Sbjct: 285 F 285

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 49/277 (17%), Positives = 98/277 (35%), Gaps = 26/277 (9%)

Query: 72  LVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSD 131
           L +  ++    +++  ++    A++  +  L      +    +   + +L ++  L L D
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKD 72

Query: 132 NHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITF 191
           N       L PL N +++   +   N +   +     L      +++L L+S     IT 
Sbjct: 73  NQIT---DLAPLKNLTKITELELSGNPLK-NVSAIAGLQ----SIKTLDLTST---QITD 121

Query: 192 PKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLR 251
              L    +L+ + L   ++    P   L   T L+ LS+ N  +      P+ +  +L 
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDL--TPLANLSKLT 176

Query: 252 LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTG 311
            L    N      PL     L  L   ++  N +  S  S   N + L  + L+N  +T 
Sbjct: 177 TLKADDNKISDISPLAS---LPNLIEVHLKNNQI--SDVSPLANTSNLFIVTLTNQTITN 231

Query: 312 EIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNL 348
           +   +     V       S   +     S N    + 
Sbjct: 232 QPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASP 268

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 46/277 (16%), Positives = 90/277 (32%), Gaps = 55/277 (19%)

Query: 366 LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI 425
               ++   +    ++++  +     +L  +  +      +     ++   L  L  L++
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLEL 70

Query: 426 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLT-LMILDLSYNHLNGNIPD 484
            DN I+  L    +   I ++ LS N     LK  +    L  +  LDL+   +    P 
Sbjct: 71  KDNQIT-DLAPLKNLTKITELELSGN----PLKNVSAIAGLQSIKTLDLTSTQITDVTP- 124

Query: 485 RVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE--- 541
            + GLS L  L L  N +    P  L  L  LQ L + N  +   +    + + L     
Sbjct: 125 -LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DLTPLANLSKLTTLKA 180

Query: 542 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCN 601
             N  S + P  +                                      L  + L  N
Sbjct: 181 DDNKISDISPLASL-----------------------------------PNLIEVHLKNN 205

Query: 602 RLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNL 638
           + I  + P + N + +  + L++  +        +NL
Sbjct: 206 Q-ISDVSP-LANTSNLFIVTLTNQTITNQPVFYNNNL 240

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 42/212 (19%), Positives = 79/212 (37%), Gaps = 27/212 (12%)

Query: 468 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 527
            + +    +++   +      L  ++ L      +     +Q   LN L  L+L +N + 
Sbjct: 21  AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKDNQIT 76

Query: 528 GHIPSCFDNTTLHE---RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYT 584
             +    + T + E     N   ++                   Q +++ D T+  IT  
Sbjct: 77  -DLAPLKNLTKITELELSGNPLKNVSAIAGL-------------QSIKTLDLTSTQITDV 122

Query: 585 YQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESL 644
                 S L  L L  N+ I +I P +  LT +Q L++ +  ++   P   +NL  + +L
Sbjct: 123 TPLAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTL 178

Query: 645 DLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 676
               NK+S  I   L  L  L    +  N +S
Sbjct: 179 KADDNKIS-DISP-LASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 31/198 (15%), Positives = 64/198 (32%), Gaps = 35/198 (17%)

Query: 487 DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE---RY 543
             L+    +    +N+   V      L+ +  L      +   I        L     + 
Sbjct: 16  PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKD 72

Query: 544 NNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSL-----LSGLDL 598
           N  + L P +                 +   + +   +       V ++     +  LDL
Sbjct: 73  NQITDLAPLK-------------NLTKITELELSGNPLK-----NVSAIAGLQSIKTLDL 114

Query: 599 SCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQ 658
           +  + I  + P +  L+ +Q L L  N +    P   + L N++ L +   ++S  +   
Sbjct: 115 TSTQ-ITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DLT-P 168

Query: 659 LVELNTLAVFSVAYNNLS 676
           L  L+ L       N +S
Sbjct: 169 LANLSKLTTLKADDNKIS 186

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 47/267 (17%), Positives = 85/267 (31%), Gaps = 62/267 (23%)

Query: 220 LENNTKLRQLSLVNDSL-------VGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDIL 272
           L  +  ++++ L  +++       +      I S K L + + S + F G +  EI + L
Sbjct: 28  LLEDDSVKEIVLSGNTIGTEAARWLSEN---IASKKDLEIAEFS-DIFTGRVKDEIPEAL 83

Query: 273 ----------SRLTVFNISMNAL--DG--SIPSSFGNMNFLQFLDLSNNQLTGE------ 312
                      +L    +S NA        +         L+ L L NN L  +      
Sbjct: 84  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 143

Query: 313 ------IPEHLAMGCVSLRSLALSNNNLE-------GHMFSRNFNLTNLIWLQLEGNHF- 358
                      A     LRS+    N LE          F  +     L  +++  N   
Sbjct: 144 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH---RLLHTVKMVQNGIR 200

Query: 359 ----VGEIPQSLSKCSSLQGLFLSNNSLSGK----IPRWLGNLTVLRHIIMPKNHI--EG 408
                  + + L+ C  L+ L L +N+ +      +   L +   LR + +    +   G
Sbjct: 201 PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260

Query: 409 PIP----LEFCQLRILQILDISDNNIS 431
                      +   LQ L +  N I 
Sbjct: 261 AAAVVDAFSKLENIGLQTLRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 48/272 (17%), Positives = 80/272 (29%), Gaps = 55/272 (20%)

Query: 295 NMNFLQFLDLSNNQLTGEIPEHLAMG---CVSLRSLALSNNNL-----EGHMFSRNF--- 343
             + ++ + LS N +  E    L+        L     S+        E     R     
Sbjct: 30  EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89

Query: 344 --NLTNLIWLQLEGNHF----VGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLR 397
                 L  ++L  N F       +   LSK + L+ L+L NN L  +    +     L+
Sbjct: 90  LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQ 147

Query: 398 HIIMPKNHIEGPIPLEFCQLRILQILDISDNNI--------SGSLPSCYDFVCIEQVHLS 449
            + + K     P          L+ +    N +        + +  S      +  V + 
Sbjct: 148 ELAVNKKAKNAP---------PLRSIICGRNRLENGSMKEWAKTFQSH---RLLHTVKMV 195

Query: 450 KNMLHGQ-----LKEGTFFNCLTLMILDLSYNHLNGN----IPDRVDGLSQLSYLILAHN 500
           +N +  +     L EG    C  L +LDL  N         +   +     L  L L   
Sbjct: 196 QNGIRPEGIEHLLLEG-LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254

Query: 501 NLEGE------VPIQLCRLNQLQLLDLSNNNL 526
            L                   LQ L L  N +
Sbjct: 255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.8 bits (140), Expect = 6e-09
 Identities = 51/319 (15%), Positives = 96/319 (30%), Gaps = 65/319 (20%)

Query: 173 NFQLQSLLLSS---GYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWL---LENNTKL 226
            F ++   L        D  +    L     ++ + LS   +  E   WL   + +   L
Sbjct: 3   RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 62

Query: 227 RQLSLVNDSLVGPFRLPI-----------HSHKQLRLLDVSKNNFQGHIPLEIGDILSR- 274
                 +D   G  +  I               +L  + +S N F       + D LS+ 
Sbjct: 63  EIAEF-SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 121

Query: 275 --LTVFNISMN------------ALDGSIPSSFGNMNF-LQFLDLSNNQLTGEIPEHLAM 319
             L    +  N            AL     +        L+ +    N+L     +  A 
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181

Query: 320 G---CVSLRSLALSNNNLE--------GHMFSRNFNLTNLIWLQLEGNHF----VGEIPQ 364
                  L ++ +  N +             +       L  L L+ N F       +  
Sbjct: 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC---QELKVLDLQDNTFTHLGSSALAI 238

Query: 365 SLSKCSSLQGLFLSNNSLS-------GKIPRWLGNLTVLRHIIMPKNHI--EGPIPLEFC 415
           +L    +L+ L L++  LS             L N+  L+ + +  N I  +    L+  
Sbjct: 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNEIELDAVRTLKTV 297

Query: 416 ---QLRILQILDISDNNIS 431
              ++  L  L+++ N  S
Sbjct: 298 IDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.7 bits (132), Expect = 6e-08
 Identities = 49/328 (14%), Positives = 108/328 (32%), Gaps = 57/328 (17%)

Query: 47  SIQYLSLSNSSVSNNS-RTLDQGLCPLVHLQELHMADNDL--RG--SLPWCLANMTSLRI 101
           SI+  SL   +++    +++   L     ++E+ ++ N +       L   +A+   L I
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 102 LDVSSNQLIGSIS----------SSPLIHLTSIEDLILSDNHF----QIPISLEPLFNHS 147
            + S     G +              L+    +  + LSDN F    Q P+  + L  H+
Sbjct: 65  AEFSDIF-TGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI-DFLSKHT 122

Query: 148 RLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLS 207
            L+     NN +  +                  ++   ++     K       L  +   
Sbjct: 123 PLEHLYLHNNGLGPQAGAK--------------IARALQELAVNKKAKNAPP-LRSIICG 167

Query: 208 HIKMNEEFPNWL---LENNTKLRQLSLVNDSL-----VGPFRLPIHSHKQLRLLDVSKNN 259
             ++            +++  L  + +V + +            +   ++L++LD+  N 
Sbjct: 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227

Query: 260 FQGHIPLEIGDILSR---LTVFNISMNAL--DG--SIPSSFGNMNF--LQFLDLSNNQLT 310
           F       +   L     L    ++   L   G  ++  +F  +    LQ L L  N++ 
Sbjct: 228 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287

Query: 311 GE----IPEHLAMGCVSLRSLALSNNNL 334
            +    +   +      L  L L+ N  
Sbjct: 288 LDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 34/191 (17%), Positives = 68/191 (35%), Gaps = 28/191 (14%)

Query: 19  KSLKELYMDDARI----------ALNTSFLQIIGESMPSIQYLSLSNSSVSNNS-RTLDQ 67
             L+ LY+ +  +          AL    +    ++ P ++ +    + + N S +   +
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181

Query: 68  GLCPLVHLQELHMADNDLR-----GSLPWCLANMTSLRILDVSSNQL--IGSIS-SSPLI 119
                  L  + M  N +R       L   LA    L++LD+  N    +GS + +  L 
Sbjct: 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241

Query: 120 HLTSIEDLILSDNHFQ------IPISLEPLFNHSRLKIFDAENNEINAEIIE--SHSLTT 171
              ++ +L L+D          +  +   L N   L+    + NEI  + +      +  
Sbjct: 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNEIELDAVRTLKTVIDE 300

Query: 172 PNFQLQSLLLS 182
               L  L L+
Sbjct: 301 KMPDLLFLELN 311

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 62.9 bits (152), Expect = 2e-10
 Identities = 39/261 (14%), Positives = 80/261 (30%), Gaps = 15/261 (5%)

Query: 423 LDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNI 482
               ++ +              Q          +           L   +LS       +
Sbjct: 306 AASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VL 364

Query: 483 PDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHER 542
              ++   +L  L   +      + + +  L+ L     +              +TL   
Sbjct: 365 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF----------STLKAV 414

Query: 543 YNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNR 602
               ++      S  ++    +  +   +       K +T         L++ LDLS NR
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR 474

Query: 603 LIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS-WKIPYQLVE 661
           L   +PP +  L  ++ L  S N L   +    +NL  ++ L L  N+L        LV 
Sbjct: 475 LR-ALPPALAALRCLEVLQASDNALEN-VDG-VANLPRLQELLLCNNRLQQSAAIQPLVS 531

Query: 662 LNTLAVFSVAYNNLSGKIPER 682
              L + ++  N+L  +   +
Sbjct: 532 CPRLVLLNLQGNSLCQEEGIQ 552

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 61.3 bits (148), Expect = 7e-10
 Identities = 28/138 (20%), Positives = 60/138 (43%), Gaps = 9/138 (6%)

Query: 22  KELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMA 81
                 D   +       ++      ++ L L++  ++         L  L+ +  L ++
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC-----HLEQLLLVTHLDLS 471

Query: 82  DNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLE 141
            N LR +LP  LA +  L +L  S N L    +   + +L  +++L+L +N  Q   +++
Sbjct: 472 HNRLR-ALPPALAALRCLEVLQASDNALE---NVDGVANLPRLQELLLCNNRLQQSAAIQ 527

Query: 142 PLFNHSRLKIFDAENNEI 159
           PL +  RL + + + N +
Sbjct: 528 PLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.2 bits (140), Expect = 7e-09
 Identities = 46/299 (15%), Positives = 96/299 (32%), Gaps = 20/299 (6%)

Query: 59  SNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPL 118
                +    L  +V    L +      G        +  L    ++      +      
Sbjct: 264 PLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWT 323

Query: 119 IHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQS 178
              +  E ++L D                R ++   ++  + +E+     L     + + 
Sbjct: 324 GSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKW 383

Query: 179 LLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVG 238
            LL+      I   + L +    E   L +    +            LR   L+      
Sbjct: 384 CLLTI-----ILLMRAL-DPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE----- 432

Query: 239 PFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNF 298
              +    +  +R+L ++  +      L   + L  +T  ++S N L  ++P +   +  
Sbjct: 433 -NSVLKMEYADVRVLHLAHKDLTV---LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRC 487

Query: 299 LQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGN 356
           L+ L  S+N L   +   +A     L+ L L NN L+     +   +   L+ L L+GN
Sbjct: 488 LEVLQASDNALE-NVDG-VA-NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 7/113 (6%)

Query: 290 PSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLE---GHMFSRNFNLT 346
           P +F     L+ +DLSNNQ++ E+      G  SL SL L  N +      +F     L 
Sbjct: 49  PGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEG---LF 104

Query: 347 NLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHI 399
           +L  L L  N        +     +L  L L +N L          L  ++ +
Sbjct: 105 SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 38/165 (23%), Positives = 57/165 (34%), Gaps = 28/165 (16%)

Query: 361 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 420
           EIP +L    ++  + L  N++    P        LR I +  N I    P  F  LR L
Sbjct: 25  EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82

Query: 421 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG 480
             L +  N I+  LP                          F    +L +L L+ N +N 
Sbjct: 83  NSLVLYGNKIT-ELPK-----------------------SLFEGLFSLQLLLLNANKIN- 117

Query: 481 NIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNN 524
            +       L  L+ L L  N L+         L  +Q + L+ N
Sbjct: 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 10/132 (7%)

Query: 253 LDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPS-SFGNMNFLQFLDLSNNQLTG 311
           + + +N  +  IP        +L   ++S N +   +   +F  +  L  L L  N++T 
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 312 EIPEHLAMGCVSLRSLALSNNNLEG---HMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSK 368
           E+P+ L  G  SL+ L L+ N +       F    +L NL  L L  N        + S 
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ---DLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 369 CSSLQGLFLSNN 380
             ++Q + L+ N
Sbjct: 151 LRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 32/182 (17%), Positives = 54/182 (29%), Gaps = 59/182 (32%)

Query: 471 LDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLC-RLNQLQLLDLSNNNLHG 528
           + L  N +   IP        +L  + L++N +  E+       L  L  L L  N +  
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI-- 92

Query: 529 HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGR 588
                             + L                        F+             
Sbjct: 93  ------------------TELPK--------------------SLFEGLFS--------- 105

Query: 589 VPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLS 647
               L  L L+ N++   +      +L  +  L+L  N L      TFS LR I+++ L+
Sbjct: 106 ----LQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160

Query: 648 YN 649
            N
Sbjct: 161 QN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 10/121 (8%)

Query: 421 QILDISDNNISGSLPSCYDFVCIEQV---HLSKNMLHGQLKEGTFFNCLTLMILDLSYNH 477
             + +  N I   +P    F   +++    LS N +  +L    F    +L  L L  N 
Sbjct: 35  TEIRLEQNTIK-VIPP-GAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNK 91

Query: 478 LNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQL-CRLNQLQLLDLSNNNLHGHIPSCFD 535
           +   +P  + +GL  L  L+L  N +   + +     L+ L LL L +N L       F 
Sbjct: 92  IT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149

Query: 536 N 536
            
Sbjct: 150 P 150

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 593 LSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 651
           L+ L L  N++   +P  +   L  +Q L L+ N +       F +L N+  L L  NKL
Sbjct: 82  LNSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140

Query: 652 S 652
            
Sbjct: 141 Q 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 9/133 (6%)

Query: 300 QFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN---NLEGHMFSRNFNLTNLIWLQLEGN 356
             + L  N +   IP         LR + LSNN    L    F     L +L  L L GN
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG---LRSLNSLVLYGN 90

Query: 357 HFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWL-GNLTVLRHIIMPKNHIEGPIPLEFC 415
                         SLQ L L+ N ++  +      +L  L  + +  N ++      F 
Sbjct: 91  KITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149

Query: 416 QLRILQILDISDN 428
            LR +Q + ++ N
Sbjct: 150 PLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 44  SMPSIQYLSLSNSSVSNNSRTLDQGLC-PLVHLQELHMADNDLRGSLPW-CLANMTSLRI 101
               ++ + LSN    N    L       L  L  L +  N +   LP      + SL++
Sbjct: 54  PYKKLRRIDLSN----NQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQL 108

Query: 102 LDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ 135
           L +++N++   +       L ++  L L DN  Q
Sbjct: 109 LLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 596 LDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS-- 652
           + L  N  I  IPP       K++ ++LS+N ++   P  F  LR++ SL L  NK++  
Sbjct: 37  IRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 653 -WKIPYQLVELNTLAVFSVAYNNLSGKIPERA 683
              +   L  L  L    +  N ++  +   A
Sbjct: 96  PKSLFEGLFSLQLL---LLNANKIN-CLRVDA 123

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 14/122 (11%)

Query: 18  FKSLKELYMDDARIALNTSFLQIIGE----SMPSIQYLSLSNSSVSNNSRTLDQGL-CPL 72
           F   K+L     RI L+ + +  +       + S+  L L      N    L + L   L
Sbjct: 52  FSPYKKL----RRIDLSNNQISELAPDAFQGLRSLNSLVLYG----NKITELPKSLFEGL 103

Query: 73  VHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDN 132
             LQ L +  N +         ++ +L +L +  N+L  +I+      L +I+ + L+ N
Sbjct: 104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL-QTIAKGTFSPLRAIQTMHLAQN 162

Query: 133 HF 134
            F
Sbjct: 163 PF 164

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 49/198 (24%), Positives = 78/198 (39%), Gaps = 34/198 (17%)

Query: 346 TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNN---SLSGKIPRWLGNLTVLRHIIMP 402
            +   L L+ N       ++  + + L+ L+L++N   +L   I + L NL  L    + 
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW---VT 93

Query: 403 KNHIEGPIPLE-FCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGT 461
            N ++  +P+  F QL  L  L +  N +  SLP                          
Sbjct: 94  DNKLQA-LPIGVFDQLVNLAELRLDRNQLK-SLPP-----------------------RV 128

Query: 462 FFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLD 520
           F +   L  L L YN L  ++P  V D L+ L  L L +N L+        +L +L+ L 
Sbjct: 129 FDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187

Query: 521 LSNNNLHGHIPSCFDNTT 538
           L NN L       FD+  
Sbjct: 188 LDNNQLKRVPEGAFDSLE 205

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.6 bits (145), Expect = 8e-10
 Identities = 54/210 (25%), Positives = 73/210 (34%), Gaps = 44/210 (20%)

Query: 447 HLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGE 505
            L  N L   L    F     L +L L+ N L   +P  +   L  L  L +  N L+  
Sbjct: 43  DLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-A 99

Query: 506 VPIQL-CRLNQLQLLDLSNNNLHGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMG 560
           +PI +  +L  L  L L  N L    P  FD+    T L   YN   SL           
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK--------- 150

Query: 561 GMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQT 619
                        FD  T              L  L L  N+L   +P      LT+++T
Sbjct: 151 -----------GVFDKLTS-------------LKELRLYNNQL-KRVPEGAFDKLTELKT 185

Query: 620 LNLSHNNLAGPIPSTFSNLRNIESLDLSYN 649
           L L +N L       F +L  ++ L L  N
Sbjct: 186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.5 bits (137), Expect = 8e-09
 Identities = 48/193 (24%), Positives = 69/193 (35%), Gaps = 43/193 (22%)

Query: 467 TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC-RLNQLQLLDLSNNN 525
               LDL  N L+         L++L  L L  N L+  +P  +   L  L+ L +++N 
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96

Query: 526 LHGHIPSC-FDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKS 580
           L   +P   FD       L    N   SL P            V         FD  TK 
Sbjct: 97  LQ-ALPIGVFDQLVNLAELRLDRNQLKSLPP-----------RV---------FDSLTK- 134

Query: 581 ITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLR 639
                       L+ L L  N L   +P  +   LT ++ L L +N L       F  L 
Sbjct: 135 ------------LTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181

Query: 640 NIESLDLSYNKLS 652
            +++L L  N+L 
Sbjct: 182 ELKTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 56/214 (26%), Positives = 83/214 (38%), Gaps = 36/214 (16%)

Query: 303 DLSNNQLT---GEIPEHLAMGCVSLRSLALSNNN---LEGHMFSRNFNLTNLIWLQLEGN 356
           D S+ +LT     IP          + L L +N    L    F R   LT L  L L  N
Sbjct: 22  DCSSKKLTAIPSNIP-------ADTKKLDLQSNKLSSLPSKAFHR---LTKLRLLYLNDN 71

Query: 357 HFVGEIPQSLS-----KCSSLQGLFLSNN---SLSGKIPRWLGNLTVLRHIIMPKNHIEG 408
                  Q+L      +  +L+ L++++N   +L   +   L NL  LR   + +N ++ 
Sbjct: 72  KL-----QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR---LDRNQLKS 123

Query: 409 PIPLEFCQLRILQILDISDNNISGSLPS--CYDFVCIEQVHLSKNMLHGQLKEGTFFNCL 466
             P  F  L  L  L +  N +  SLP         ++++ L  N L  ++ EG F    
Sbjct: 124 LPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLT 181

Query: 467 TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHN 500
            L  L L  N L        D L +L  L L  N
Sbjct: 182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.4 bits (129), Expect = 8e-08
 Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 20/174 (11%)

Query: 271 ILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALS 330
           I +     ++  N L      +F  +  L+ L L++N+L   +P  +     +L +L ++
Sbjct: 35  IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT 93

Query: 331 NNNLE---GHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLS-----KCSSLQGLFLSNNSL 382
           +N L+     +F     L NL  L+L+ N       +SL        + L  L L  N L
Sbjct: 94  DNKLQALPIGVFD---QLVNLAELRLDRNQL-----KSLPPRVFDSLTKLTYLSLGYNEL 145

Query: 383 SGKIPRWL-GNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLP 435
              +P+ +   LT L+ + +  N ++      F +L  L+ L + +N +   +P
Sbjct: 146 Q-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVP 197

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 56/240 (23%), Positives = 84/240 (35%), Gaps = 65/240 (27%)

Query: 97  TSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEP-LFNH-SRLKIFDA 154
              + LD+ SN+ + S+ S     LT +  L L+DN  Q   +L   +F     L+    
Sbjct: 37  ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQ---TLPAGIFKELKNLETLWV 92

Query: 155 ENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEE 214
            +N                 +LQ+L    G  D +     L                   
Sbjct: 93  TDN-----------------KLQAL--PIGVFDQLVNLAELR------------------ 115

Query: 215 FPNWLLENNTKLRQLSL-VNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILS 273
                L+ N +L+ L   V DSL            +L  L +  N  Q  +P  + D L+
Sbjct: 116 -----LDRN-QLKSLPPRVFDSLT-----------KLTYLSLGYNELQ-SLPKGVFDKLT 157

Query: 274 RLTVFNISMNALDGSIPSS-FGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN 332
            L    +  N L   +P   F  +  L+ L L NNQL   +PE        L+ L L  N
Sbjct: 158 SLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 38/177 (21%), Positives = 56/177 (31%), Gaps = 48/177 (27%)

Query: 516 LQLLDLSNNNLHGHIPSCFDN----TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQIL 571
            + LDL +N L       F        L+   N   +L                      
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA-------------------- 78

Query: 572 ESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGP 630
             F                  L  L ++ N+L   +P  +   L  +  L L  N L   
Sbjct: 79  GIFKELKN-------------LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSL 124

Query: 631 IPSTFSNLRNIESLDLSYNKLSWKIPY----QLVELNTLAVFSVAYNNLSGKIPERA 683
            P  F +L  +  L L YN+L   +P     +L  L  L +    YNN   ++PE A
Sbjct: 125 PPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRL----YNNQLKRVPEGA 176

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 11/133 (8%)

Query: 1   MTNCEVNGVLSGQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSN 60
           M       +     + +    +EL +   +I      ++ +G ++     +  S+    N
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKI----PVIENLGATLDQFDAIDFSD----N 52

Query: 61  NSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISS-SPLI 119
             R LD G   L  L+ L + +N +          +  L  L +++N  +  +    PL 
Sbjct: 53  EIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLA 110

Query: 120 HLTSIEDLILSDN 132
            L S+  L +  N
Sbjct: 111 SLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 23/117 (19%), Positives = 43/117 (36%), Gaps = 7/117 (5%)

Query: 43  ESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRIL 102
            +    + L L           ++     L     +  +DN++R  L      +  L+ L
Sbjct: 16  TNAVRDRELDLRG----YKIPVIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTL 69

Query: 103 DVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEI 159
            V++N+ I  I       L  + +LIL++N       L+PL +   L       N +
Sbjct: 70  LVNNNR-ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 3/88 (3%)

Query: 344 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 403
           N      L L G   +  I    +       +  S+N +  K+      L  L+ +++  
Sbjct: 17  NAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVNN 73

Query: 404 NHIEGPIPLEFCQLRILQILDISDNNIS 431
           N I          L  L  L +++N++ 
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 9/107 (8%)

Query: 422 ILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN-- 479
           ++ ++   I        + V   ++ L    +   + E           +D S N +   
Sbjct: 1   MVKLTAELIE-QAAQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIRKL 57

Query: 480 GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 526
              P     L +L  L++ +N +          L  L  L L+NN+L
Sbjct: 58  DGFP----LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 8/115 (6%)

Query: 220 LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFN 279
             N  + R+L L    +     L   +  Q   +D S N  +    L+   +L RL    
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIR---KLDGFPLLRRLKTLL 70

Query: 280 ISMNALDGSIPSSFGNMNFLQFLDLSNNQLT--GEIPEHLAMGCVSLRSLALSNN 332
           ++ N +          +  L  L L+NN L   G++ + LA    SL  L +  N
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLA-SLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 596 LDLSCNRL--IGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 652
           +D S N +  +   P     L +++TL +++N +          L ++  L L+ N L 
Sbjct: 47  IDFSDNEIRKLDGFP----LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 56.6 bits (137), Expect = 5e-09
 Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 7/131 (5%)

Query: 253 LDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGE 312
           L ++ N F       I   L +L   N S N +      +F   + +  + L++N+L   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 313 IPEHLAMGCVSLRSLALSNNNLE---GHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKC 369
           +   +  G  SL++L L +N +       F     L+++  L L  N      P +    
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFI---GLSSVRLLSLYDNQITTVAPGAFDTL 152

Query: 370 SSLQGLFLSNN 380
            SL  L L  N
Sbjct: 153 HSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 7/120 (5%)

Query: 421 QILDISDNNISGSLPSCYDFVCIEQVH---LSKNMLHGQLKEGTFFNCLTLMILDLSYNH 477
             L +++N  +  L +   F  + Q+     S N +   ++EG F     +  + L+ N 
Sbjct: 35  AELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNR 92

Query: 478 LNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN 536
           L  N+  ++  GL  L  L+L  N +          L+ ++LL L +N +    P  FD 
Sbjct: 93  LE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 26/181 (14%), Positives = 50/181 (27%), Gaps = 56/181 (30%)

Query: 471 LDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGH 529
           L L+ N         +   L QL  +  ++N +           + +  + L++N L   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL--- 93

Query: 530 IPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRV 589
                    +  +                               F               
Sbjct: 94  -------ENVQHK------------------------------MFKGLES---------- 106

Query: 590 PSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSY 648
              L  L L  NR+   +       L+ ++ L+L  N +    P  F  L ++ +L+L  
Sbjct: 107 ---LKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162

Query: 649 N 649
           N
Sbjct: 163 N 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 8/92 (8%)

Query: 46  PSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPW-CLANMTSLRILD 103
           P ++ ++ SN    N    +++G       + E+ +  N L  ++       + SL+ L 
Sbjct: 57  PQLRKINFSN----NKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLM 111

Query: 104 VSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ 135
           + SN++   + +   I L+S+  L L DN   
Sbjct: 112 LRSNRI-TCVGNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 593 LSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 651
           ++ + L+ NRL   +  ++   L  ++TL L  N +      +F  L ++  L L  N++
Sbjct: 83  VNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141

Query: 652 S 652
           +
Sbjct: 142 T 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 6/132 (4%)

Query: 300 QFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN---NLEGHMFSRNFNLTNLIWLQLEGN 356
             L L+NN+ T      +      LR +  SNN   ++E   F      + +  + L  N
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG---ASGVNEILLTSN 91

Query: 357 HFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQ 416
                  +      SL+ L L +N ++         L+ +R + +  N I    P  F  
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151

Query: 417 LRILQILDISDN 428
           L  L  L++  N
Sbjct: 152 LHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 9/86 (10%)

Query: 596 LDLSCNRLIGHIPPQIG--NLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS- 652
           L L+ N     +        L +++ +N S+N +       F     +  + L+ N+L  
Sbjct: 37  LRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 653 --WKIPYQLVELNTLAVFSVAYNNLS 676
              K+   L  L TL    +  N ++
Sbjct: 96  VQHKMFKGLESLKTL---MLRSNRIT 118

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 56.3 bits (135), Expect = 1e-08
 Identities = 17/84 (20%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 593 LSGLDLSCNRLIGHIPPQ-IGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 651
           L+ L +   + + H+  + +  L +++ L +  + L    P  F     +  L+LS+N L
Sbjct: 33  LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92

Query: 652 SWKIPYQLVELNTLAVFSVAYNNL 675
              + ++ V+  +L    ++ N L
Sbjct: 93  ES-LSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.9 bits (134), Expect = 2e-08
 Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 3/107 (2%)

Query: 597 DLSC-NRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPS-TFSNLRNIESLDLSYNKLSWK 654
            L C           +     +  L + +      +       L  + +L +  + L + 
Sbjct: 12  GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 655 IPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLC 701
            P        L+  ++++N L   +  +  Q  +  E    GNP  C
Sbjct: 72  APDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.7 bits (131), Expect = 4e-08
 Identities = 22/98 (22%), Positives = 29/98 (29%), Gaps = 7/98 (7%)

Query: 288 SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL---EGHMFSRNFN 344
                      L  L + N Q    +      G   LR+L +  + L       F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH---F 78

Query: 345 LTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSL 382
              L  L L  N     +     +  SLQ L LS N L
Sbjct: 79  TPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 3e-06
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 1/84 (1%)

Query: 468 LMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 526
           L  L +       ++  R   GL +L  L +  + L    P       +L  L+LS N L
Sbjct: 33  LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92

Query: 527 HGHIPSCFDNTTLHERYNNGSSLQ 550
                      +L E   +G+ L 
Sbjct: 93  ESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 4e-06
 Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 6/96 (6%)

Query: 67  QGLCPLVHLQELHMADNDLRGSLPW-CLANMTSLRILDVSSNQLIGSISSSPLIHLTSIE 125
             L    +L EL++ +      L    L  +  LR L +  +  +  ++         + 
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLS 83

Query: 126 DLILSDNHFQIPISLEP-LFNHSRLKIFDAENNEIN 160
            L LS N  +   SL         L+      N ++
Sbjct: 84  RLNLSFNALE---SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 1/95 (1%)

Query: 361 EIPQSLSKCSSLQGLFLSNNSLSGKIPRW-LGNLTVLRHIIMPKNHIEGPIPLEFCQLRI 419
           +    L    +L  L++ N      +    L  L  LR++ + K+ +    P  F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 420 LQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLH 454
           L  L++S N +          + ++++ LS N LH
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 5e-05
 Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 2/87 (2%)

Query: 248 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNN 307
           + L  L +       H+ L     L  L    I  + L    P +F     L  L+LS N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 308 QLTGEIPEHLAMGCVSLRSLALSNNNL 334
            L     + +    +SL+ L LS N L
Sbjct: 91  ALESLSWKTVQG--LSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 22/119 (18%), Positives = 31/119 (26%), Gaps = 26/119 (21%)

Query: 410 IPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLM 469
                     L  L I +      L                                 L 
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLEL-----------------------RDLRGLGELR 59

Query: 470 ILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 527
            L +  + L   +         +LS L L+ N LE  +  +  +   LQ L LS N LH
Sbjct: 60  NLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 61/400 (15%), Positives = 132/400 (33%), Gaps = 41/400 (10%)

Query: 17  HFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNS-RTLDQGLCPLVHL 75
            FK+ K L +       +T  L  I  +  +++ L L  S V + S   L         L
Sbjct: 128 SFKNFKVLVLSSCE-GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSL 186

Query: 76  QELHMADNDLR---GSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDN 132
             L+++         +L   +    +L+ L ++    +  +++  L     +E+L     
Sbjct: 187 VSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGY 245

Query: 133 HFQIPISL-----EPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRD 187
             ++   +       L     L+      + + A +   +S+ +   +L +L LS     
Sbjct: 246 TAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCS---RLTTLNLSYATVQ 302

Query: 188 GITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLP---- 243
                K L     L+ + +     +      L      LR+L +                
Sbjct: 303 SYDLVKLLCQCPKLQRLWVLDYIEDAGL-EVLASTCKDLRELRVFPSEPFVMEPNVALTE 361

Query: 244 ------IHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNIS-----------MNALD 286
                      +L  +            + I      +T F +            +  LD
Sbjct: 362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD 421

Query: 287 GSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL--EGHMFSRNFN 344
               +   +   L+ L LS   LT ++ E++      +  L+++       G M      
Sbjct: 422 IGFGAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYAKKMEMLSVAFAGDSDLG-MHHVLSG 479

Query: 345 LTNLIWLQLEGNHFVGE-IPQSLSKCSSLQGLFLSNNSLS 383
             +L  L++    F  + +  + SK  +++ L++S+ S+S
Sbjct: 480 CDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 50/347 (14%), Positives = 109/347 (31%), Gaps = 35/347 (10%)

Query: 17  HFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRT---LDQGLCPLV 73
              +LK L ++ A        L  + +  P ++ L     +          L   L    
Sbjct: 209 RCPNLKSLKLNRAV---PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCK 265

Query: 74  HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLIL---- 129
            L+ L    + +   LP   +  + L  L++S   +        L     ++ L +    
Sbjct: 266 ELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI 325

Query: 130 SDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIES--HSLTTPNFQLQSLLLSSGYRD 187
            D   ++  S        R+   +    E N  + E    S++    +L+S+L    +  
Sbjct: 326 EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY---FCR 382

Query: 188 GIT---FPKFLYNQHDLEYVRLSHIKMNEEFPNW----------LLENNTKLRQLSL--- 231
            +T         N+ ++   RL  I+                  ++E+   LR+LSL   
Sbjct: 383 QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL 442

Query: 232 VNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNIS-MNALDGSIP 290
           + D +           K++ +L V+           +      L    I      D ++ 
Sbjct: 443 LTDKVFEYI---GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALL 499

Query: 291 SSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGH 337
           ++   +  ++ L +S+  ++    + L      L    +        
Sbjct: 500 ANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDS 546

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 37/237 (15%), Positives = 82/237 (34%), Gaps = 30/237 (12%)

Query: 299 LQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNL--EGHMFSRNFNLTNLIWLQLEGN 356
           L+ + L    +T +  E +A    + + L LS+        + +      NL  L L  +
Sbjct: 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES 166

Query: 357 HFVGEIPQSLS----KCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPL 412
                    LS      +SL  L +S   L+ ++     + + L  +            +
Sbjct: 167 DVDDVSGHWLSHFPDTYTSLVSLNISC--LASEV-----SFSALERL------------V 207

Query: 413 EFC-QLRILQILD-ISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLK--EGTFFNCLTL 468
             C  L+ L++   +    ++  L        +     +  +              C  L
Sbjct: 208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKEL 267

Query: 469 MILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQL-CRLNQLQLLDLSNN 524
             L   ++ +   +P      S+L+ L L++  ++    ++L C+  +LQ L + + 
Sbjct: 268 RCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 37/227 (16%), Positives = 72/227 (31%), Gaps = 16/227 (7%)

Query: 172 PNFQLQSLLLSS-GYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLS 230
           P+F   +L+    G            +   LE +RL  + + ++    + ++    + L 
Sbjct: 77  PHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLV 136

Query: 231 LVNDSLVGP--FRLPIHSHKQLRLLDVSKNNFQ---GHIPLEIGDILSRLTVFNISMNAL 285
           L +              + + L+ LD+ +++     GH      D  + L   NIS  A 
Sbjct: 137 LSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLAS 196

Query: 286 ---DGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALS------NNNLEG 336
                ++         L+ L L+      ++   L      L  L           ++  
Sbjct: 197 EVSFSALERLVTRCPNLKSLKLNRAVPLEKL-ATLLQRAPQLEELGTGGYTAEVRPDVYS 255

Query: 337 HMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS 383
            +         L  L    +     +P   S CS L  L LS  ++ 
Sbjct: 256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ 302

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 55.7 bits (134), Expect = 4e-08
 Identities = 52/389 (13%), Positives = 115/389 (29%), Gaps = 52/389 (13%)

Query: 17  HFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNS-RTLDQGLCPLVHL 75
               L+ L +D       T  L  I      I+ L +  SS S    + L +       L
Sbjct: 136 RADDLETLKLDKCS-GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSL 194

Query: 76  QELHMADNDLRG----SLPWCLANMTSLRILDVSSNQLI---GSISSSPLIHLTSIEDLI 128
           + L+    +        L     N  SL  + V   +++   G   ++  +       L 
Sbjct: 195 EVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLN 254

Query: 129 LSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNF-------------- 174
                 +  ++L       RL +     NE+      +  +   +               
Sbjct: 255 EDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLI 314

Query: 175 ----QLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNW-----------L 219
                L+ L   +   D             L+ +R+      +   +            L
Sbjct: 315 QKCPNLEVLETRNVIGD-RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL 373

Query: 220 LENNTKLRQLSL----VNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDI---- 271
            +   +L  +++    + +  +      + +    RL+ + +      +PL+ G      
Sbjct: 374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI 433

Query: 272 ----LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSL 327
               L R   +       D  +         ++++ L     + E     + GC +L+ L
Sbjct: 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL 493

Query: 328 ALSNNNL-EGHMFSRNFNLTNLIWLQLEG 355
            +      E  + +    L +L +L ++G
Sbjct: 494 EMRGCCFSERAIAAAVTKLPSLRYLWVQG 522

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 55.1 bits (133), Expect = 4e-08
 Identities = 53/276 (19%), Positives = 94/276 (34%), Gaps = 49/276 (17%)

Query: 299 LQFLDLSNNQLTGEIPEHLAMG----CVSLRSLALSNNNLE---GHMFSR--NFNLTNLI 349
           +  LDLS N L       L         S+ SL LS N+L         +       N+ 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 350 WLQLEGNHF----VGEIPQSLSKC-SSLQGLFLSNNSLSGKIPRWLGNL-----TVLRHI 399
            L L GN        E+ ++L+    ++  L L  N  S K               +  +
Sbjct: 84  SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143

Query: 400 IMPKNHIEGPIPLEFCQL-----RILQILDISDNNI--------SGSLPSCYDFVCIEQV 446
            +  N +      E  Q+       +  L++  NN+        +  L S      +  +
Sbjct: 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP--ASVTSL 201

Query: 447 HLSKNMLHGQ----LKEGTFFNCLTLMILDLSYNHLNG----NIPDRVDGLSQLSYLILA 498
            LS N+L  +    L          ++ L+L  N L+G    N+    D L  L  + L 
Sbjct: 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261

Query: 499 HNNLEGEVPIQ-------LCRLNQLQLLDLSNNNLH 527
           ++ ++     Q          + ++ L+D +   +H
Sbjct: 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.9 bits (122), Expect = 9e-07
 Identities = 64/379 (16%), Positives = 116/379 (30%), Gaps = 87/379 (22%)

Query: 219 LLENNTKLRQLSLVNDSLVGP------FRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDIL 272
                  +  L L  ++L          +   ++   +  L++S N+       E+  IL
Sbjct: 17  FTSIPHGVTSLDLSLNNL-YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75

Query: 273 ----SRLTVFNISMNALDG----SIPSSFGNMNF-LQFLDLSNNQLTGEIPEHLAMG--- 320
               + +T  N+S N L       +  +   + F +  LDL  N  + +           
Sbjct: 76  AAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSN 135

Query: 321 -CVSLRSLALSNNNLE---GHMFS---RNFNLTNLIWLQLEGNHF----VGEIPQSL-SK 368
              S+ SL L  N+L                  N+  L L GN+       E+ + L S 
Sbjct: 136 LPASITSLNLRGNDLGIKSSDELIQILAAIP-ANVNSLNLRGNNLASKNCAELAKFLASI 194

Query: 369 CSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDN 428
            +S+  L LS N L  K    L    +        NH              +  L++  N
Sbjct: 195 PASVTSLDLSANLLGLKSYAELAY--IFSS---IPNH--------------VVSLNLCLN 235

Query: 429 NISGS--------LPSCYDFVCIEQVHLSKNMLHGQLKEG------TFFNCLTLMILDLS 474
            + G           S      ++ V+L  +++    KE        F N   ++++D +
Sbjct: 236 CLHGPSLENLKLLKDSLK---HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKN 292

Query: 475 YNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCF 534
              ++            +S LI   +           + +   LL+        H  +  
Sbjct: 293 GKEIH------PSHSIPISNLIRELS----------GKADVPSLLNQCLIFAQKHQTNIE 336

Query: 535 D---NTTLHERYNNGSSLQ 550
           D      L E       L 
Sbjct: 337 DLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 52/362 (14%), Positives = 99/362 (27%), Gaps = 71/362 (19%)

Query: 93  LANMTSLRILDVSSNQL----IGSISSSPLIHLTSIEDLILSDNHFQ----IPISLEPLF 144
            +    +  LD+S N L       +  +      S+  L LS N         +      
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 145 NHSRLKIFDAENNEINAEIIE--SHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLE 202
             + +   +   N ++ +  +    +L    F +  L L              +N    +
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLG-------------WNDFSSK 124

Query: 203 YVRLSHIKMNEEFPNWLLENNTKLRQLSLVN--------DSLVGPFRLPIHSHKQLRLLD 254
                      EF          +  L+L          D L+            +  L+
Sbjct: 125 SS--------SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA---AIPANVNSLN 173

Query: 255 VSKNNFQGHIPLEIGDIL----SRLTVFNISMNALDGSIPSSFG-----NMNFLQFLDLS 305
           +  NN       E+   L    + +T  ++S N L     +          N +  L+L 
Sbjct: 174 LRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233

Query: 306 NNQLTGEIPEHLAMG---CVSLRSLALSNNNLEG-------HMFSRNFNLTNLIWLQLEG 355
            N L G   E+L +       L+++ L  + ++         + +   N+  +I +   G
Sbjct: 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293

Query: 356 NHFVGEIPQSLSK-----CSSLQGLFLSNNSLS-----GKIPRWLGNLTVLRHIIMPKNH 405
                     +S              L N  L            L     LR  I     
Sbjct: 294 KEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKP 353

Query: 406 IE 407
           + 
Sbjct: 354 LL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.8 bits (114), Expect = 9e-06
 Identities = 46/344 (13%), Positives = 102/344 (29%), Gaps = 44/344 (12%)

Query: 43  ESMPSIQYLSLSNSSVSNNS-RTLDQGLC-PLVHLQELHMADNDLRGSLPWCLANM---- 96
                +  L LS +++ + S   L Q        +  L+++ N L       L  +    
Sbjct: 19  SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78

Query: 97  -TSLRILDVSSNQL----IGSISSSPLIHLTSIEDLILSDNHFQ----IPISLEPLFNHS 147
             ++  L++S N L       +  +      +I  L L  N F                +
Sbjct: 79  PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138

Query: 148 RLKIFDAENNEINAEIIE--SHSLTTPNFQLQSLLLSS---GYRDGITFPKFLYNQHD-L 201
            +   +   N++  +  +     L      + SL L       ++     KFL +    +
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198

Query: 202 EYVRLSHIKMNEEFPNWLLE----NNTKLRQLSLVNDSL----VGPFRLPIHSHKQLRLL 253
             + LS   +  +    L          +  L+L  + L    +   +L   S K L+ +
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258

Query: 254 DVSKNNFQGHIPLEIGDILS------RLTVFNISMNALDGS----IPSSFGNMNF-LQFL 302
            +  +  +     +   + +      ++ + + +   +  S    I +    ++      
Sbjct: 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVP 318

Query: 303 DLSNNQLTGE----IPEHLAMGCVSLRSLALSNNNLEGHMFSRN 342
            L N  L                  LR    +   L  H    +
Sbjct: 319 SLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLLEHHHHHH 362

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 51.6 bits (124), Expect = 5e-08
 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 5/122 (4%)

Query: 38  LQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMT 97
           L++   +   ++ L L NS   +N   L+        L+ L   +  L  S+   L  + 
Sbjct: 9   LELRNRTPSDVKELVLDNSR--SNEGKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKLN 64

Query: 98  SLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENN 157
            L+ L++S N+ +            ++  L LS N  +   ++EPL     LK  D  N 
Sbjct: 65  KLKKLELSDNR-VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

Query: 158 EI 159
           E+
Sbjct: 124 EV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 5e-07
 Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 9/117 (7%)

Query: 17  HFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQ 76
               +KEL +D++R   N   L+ + +    +++LS  N        ++   L  L  L+
Sbjct: 15  TPSDVKELVLDNSRS--NEGKLEGLTDEFEELEFLSTIN----VGLTSIA-NLPKLNKLK 67

Query: 77  ELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISS-SPLIHLTSIEDLILSDN 132
           +L ++DN + G L        +L  L++S N+ I  +S+  PL  L +++ L L + 
Sbjct: 68  KLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 5/107 (4%)

Query: 302 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVG 360
           L L N++      E L      L  L+  N  L       N   L  L  L+L  N   G
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA---NLPKLNKLKKLELSDNRVSG 78

Query: 361 EIPQSLSKCSSLQGLFLSNNSLSG-KIPRWLGNLTVLRHIIMPKNHI 406
            +     KC +L  L LS N +        L  L  L+ + +    +
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 593 LSGLDLSCNRL--IGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNK 650
           L  L      L  I ++P     L K++ L LS N ++G +        N+  L+LS NK
Sbjct: 44  LEFLSTINVGLTSIANLP----KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK 99

Query: 651 L-SWKIPYQLVELNTLAVFSVAYN 673
           +        L +L  L    +   
Sbjct: 100 IKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 18/99 (18%), Positives = 40/99 (40%), Gaps = 3/99 (3%)

Query: 579 KSITYTYQGRVPSLLSGLDLSCNRL-IGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSN 637
           + I    + R PS +  L L  +R   G +        +++ L+  +  L     +    
Sbjct: 5   RRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPK 62

Query: 638 LRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 676
           L  ++ L+LS N++S  +     +   L   +++ N + 
Sbjct: 63  LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 6/114 (5%)

Query: 221 ENNTKLRQLSL-VNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFN 279
              + +++L L  + S  G         ++L  L            +     L++L    
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS---IANLPKLNKLKKLE 70

Query: 280 ISMNALDGSIPSSFGNMNFLQFLDLSNNQLTG-EIPEHLAMGCVSLRSLALSNN 332
           +S N + G +         L  L+LS N++      E L     +L+SL L N 
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLK-KLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 8/87 (9%)

Query: 443 IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLS---QLSYLILAH 499
           ++++ L  +  +    EG       L  L      L       +  L    +L  L L+ 
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-----TSIANLPKLNKLKKLELSD 73

Query: 500 NNLEGEVPIQLCRLNQLQLLDLSNNNL 526
           N + G + +   +   L  L+LS N +
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKI 100

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 36/245 (14%), Positives = 84/245 (34%), Gaps = 29/245 (11%)

Query: 68  GLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDL 127
               L +  + ++    +   +      ++ ++  +  ++  I S+  + +   T++++L
Sbjct: 14  PDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSN-IQSL--AGMQFFTNLKEL 68

Query: 128 ILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRD 187
            LS N  QI   L PL + ++L+      N +  + +           L  L L +   +
Sbjct: 69  HLSHN--QI-SDLSPLKDLTKLEELSVNRNRL--KNLNGIPSAC----LSRLFLDN---N 116

Query: 188 GITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSH 247
            +     L +  +LE + + + K+        L   +KL  L L  + +       +   
Sbjct: 117 ELRDTDSLIHLKNLEILSIRNNKLKSIVM---LGFLSKLEVLDLHGNEITNT--GGLTRL 171

Query: 248 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSI--PSSFGNMNFLQFLDLS 305
           K++  +D++          E       L + N   +  DG    P    N        + 
Sbjct: 172 KKVNWIDLTGQK----CVNEPVKYQPELYITNTVKD-PDGRWISPYYISNGGSYVDGCVL 226

Query: 306 NNQLT 310
                
Sbjct: 227 WELPV 231

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 40/224 (17%), Positives = 84/224 (37%), Gaps = 28/224 (12%)

Query: 16  PHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHL 75
           P   +  +  +    +    S      + +  +Q  +  NS++ + +     G+    +L
Sbjct: 16  PGLANAVKQNLGKQSVTDLVSQ-----KELSGVQNFNGDNSNIQSLA-----GMQFFTNL 65

Query: 76  QELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ 135
           +ELH++ N +    P  L ++T L  L V+ N+    + +   I    +  L L +N  +
Sbjct: 66  KELHLSHNQISDLSP--LKDLTKLEELSVNRNR----LKNLNGIPSACLSRLFLDNNELR 119

Query: 136 IPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFL 195
                + L +   L+I    NN++   I+    L+    +L+ L L     + IT    L
Sbjct: 120 ---DTDSLIHLKNLEILSIRNNKLK-SIVMLGFLS----KLEVLDLHG---NEITNTGGL 168

Query: 196 YNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGP 239
                + ++ L+  K   E P            +   +   + P
Sbjct: 169 TRLKKVNWIDLTGQKCVNE-PVKYQPELYITNTVKDPDGRWISP 211

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 35/159 (22%), Positives = 71/159 (44%), Gaps = 19/159 (11%)

Query: 7   NGVLSGQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLD 66
           + + S  G   F +LKEL++   +I+ + S L    + +  ++ LS++ + + N +    
Sbjct: 51  SNIQSLAGMQFFTNLKELHLSHNQIS-DLSPL----KDLTKLEELSVNRNRLKNLN---- 101

Query: 67  QGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIED 126
               P   L  L + +N+LR +    L ++ +L IL + +N+ + SI    L  L+ +E 
Sbjct: 102 --GIPSACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNK-LKSI--VMLGFLSKLEV 154

Query: 127 LILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIE 165
           L L  N      +   L    ++   D    +   E ++
Sbjct: 155 LDLHGNEIT---NTGGLTRLKKVNWIDLTGQKCVNEPVK 190

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 47/270 (17%), Positives = 81/270 (30%), Gaps = 49/270 (18%)

Query: 116 SPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQ 175
            P   L +     L          L      S ++ F+ +N+ I   +      T     
Sbjct: 13  FPDPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQ-SLAGMQFFT----N 64

Query: 176 LQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDS 235
           L+ L LS             +NQ       +S +          L++ TKL +LS+  + 
Sbjct: 65  LKELHLS-------------HNQ-------ISDLSP--------LKDLTKLEELSVNRNR 96

Query: 236 LVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGN 295
           L     L       L  L +  N  +    L     L  L + +I  N L  SI    G 
Sbjct: 97  LK---NLNGIPSACLSRLFLDNNELRDTDSLI---HLKNLEILSIRNNKLK-SI-VMLGF 148

Query: 296 MNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEG 355
           ++ L+ LDL  N++T             +  + L+              L     ++   
Sbjct: 149 LSKLEVLDLHGNEITNTGGLT---RLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPD 205

Query: 356 NHFVGEIPQSLSKCSSLQGLFLSNNSLSGK 385
             ++   P  +S   S     +        
Sbjct: 206 GRWIS--PYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 36/269 (13%), Positives = 74/269 (27%), Gaps = 76/269 (28%)

Query: 400 IMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKE 459
           I     I    P     L      ++   +++       D V  +               
Sbjct: 3   IQRPTPINQVFPDP--GLANAVKQNLGKQSVT-------DLVSQK--------------- 38

Query: 460 GTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLL 519
                   +   +   +++  ++   +   + L  L L+HN +    P  L  L +L+ L
Sbjct: 39  ----ELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90

Query: 520 DLSNNNLHGHIPSCFDNTTLHE---RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDF 576
            ++ N L     +   +  L       N                                
Sbjct: 91  SVNRNRLK--NLNGIPSACLSRLFLDNNELRDTDSLIHL--------------------- 127

Query: 577 TTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFS 636
                           L  L +  N+ +  I   +G L+K++ L+L  N +        +
Sbjct: 128 --------------KNLEILSIRNNK-LKSIVM-LGFLSKLEVLDLHGNEITNTGG--LT 169

Query: 637 NLRNIESLDLSYNKLSWKIPYQLVELNTL 665
            L+ +  +DL+  K   +      EL   
Sbjct: 170 RLKKVNWIDLTGQKCVNEPVKYQPELYIT 198

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 33/221 (14%), Positives = 70/221 (31%), Gaps = 39/221 (17%)

Query: 220 LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFN 279
           ++  T L++L L ++ +      P+    +L  L V++N  +    +      + L+   
Sbjct: 59  MQFFTNLKELHLSHNQISDLS--PLKDLTKLEELSVNRNRLKNLNGIP----SACLSRLF 112

Query: 280 ISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMF 339
           +  N L      S  ++  L+ L + NN+L             S+  L            
Sbjct: 113 LDNNEL--RDTDSLIHLKNLEILSIRNNKLK------------SIVMLG----------- 147

Query: 340 SRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHI 399
                L+ L  L L GN  +      L++   +  + L+      +  ++   L +   +
Sbjct: 148 ----FLSKLEVLDLHGNE-ITNTG-GLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201

Query: 400 IMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDF 440
             P      P  +            +       +    Y F
Sbjct: 202 KDPDGRWISPYYIS--NGGSYVDGCVLWELPVYTDEVSYKF 240

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 37/194 (19%), Positives = 65/194 (33%), Gaps = 48/194 (24%)

Query: 486 VDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE---R 542
             GL+      L   ++   V  +   L+ +Q  +  N+N+   +      T L E    
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLS 71

Query: 543 YNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNR 602
           +N  S L P +                 L                     L  L ++ NR
Sbjct: 72  HNQISDLSPLKD----------------LTK-------------------LEELSVNRNR 96

Query: 603 LIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVEL 662
            + ++         +  L L +N L      +  +L+N+E L +  NKL   I   L  L
Sbjct: 97  -LKNLNG--IPSACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK-SIV-MLGFL 149

Query: 663 NTLAVFSVAYNNLS 676
           + L V  +  N ++
Sbjct: 150 SKLEVLDLHGNEIT 163

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 14/135 (10%)

Query: 271 ILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLT---GEIPEHLAMGCVSLRSL 327
           I +   +  +  N +    P  F ++  L+ L L +NQL      + + L      L  L
Sbjct: 38  IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL----TQLTVL 93

Query: 328 ALSNN---NLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSG 384
            L  N    L   +F R   L +L  L +  N    E+P+ + + + L  L L  N L  
Sbjct: 94  DLGTNQLTVLPSAVFDR---LVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKS 149

Query: 385 KIPRWLGNLTVLRHI 399
                   L+ L H 
Sbjct: 150 IPHGAFDRLSSLTHA 164

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 39/118 (33%), Positives = 54/118 (45%), Gaps = 5/118 (4%)

Query: 421 QILDISDNNISGSLPSCYD-FVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN 479
           QIL + DN I+   P  +D  + +++++L  N L   L  G F +   L +LDL  N L 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 480 GNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN 536
             +P  V D L  L  L +  N L  E+P  + RL  L  L L  N L       FD 
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 41/181 (22%), Positives = 54/181 (29%), Gaps = 56/181 (30%)

Query: 470 ILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC-RLNQLQLLDLSNNNLHG 528
           IL L  N +    P   D L  L  L L  N L   +P+ +   L QL +LDL  N L  
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQL-- 100

Query: 529 HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGR 588
                             + L            +           FD             
Sbjct: 101 ------------------TVLPS---------AV-----------FDRLVH--------- 113

Query: 589 VPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSY 648
               L  L + CN+L   +P  I  LT +  L L  N L       F  L ++    L  
Sbjct: 114 ----LKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168

Query: 649 N 649
           N
Sbjct: 169 N 169

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 28/136 (20%), Positives = 62/136 (45%), Gaps = 16/136 (11%)

Query: 18  FKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQE 77
             +++EL +D+ +   N   ++ +     ++++LSL N        ++   L  L  L++
Sbjct: 23  PAAVRELVLDNCKS--NDGKIEGLTAEFVNLEFLSLIN----VGLISVS-NLPKLPKLKK 75

Query: 78  LHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISS-SPLIHLTSIEDLILSDNHFQI 136
           L +++N + G L      + +L  L++S N+ +  IS+  PL  L  ++ L L +     
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC---- 130

Query: 137 PISLEPLFNHSRLKIF 152
            ++        R  +F
Sbjct: 131 EVTNLN---DYRESVF 143

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 5/122 (4%)

Query: 38  LQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMT 97
           L++   +  +++ L L N    +N   ++      V+L+ L + +  L  S+   L  + 
Sbjct: 16  LELRNRTPAAVRELVLDNCK--SNDGKIEGLTAEFVNLEFLSLINVGLI-SVS-NLPKLP 71

Query: 98  SLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENN 157
            L+ L++S N+ I          L ++  L LS N  +   +LEPL     LK  D  N 
Sbjct: 72  KLKKLELSENR-IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

Query: 158 EI 159
           E+
Sbjct: 131 EV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 28/107 (26%), Positives = 38/107 (35%), Gaps = 5/107 (4%)

Query: 302 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVG 360
           L L N +      E L    V+L  L+L N  L       N   L  L  L+L  N   G
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS---VSNLPKLPKLKKLELSENRIFG 85

Query: 361 EIPQSLSKCSSLQGLFLSNNSLSG-KIPRWLGNLTVLRHIIMPKNHI 406
            +     K  +L  L LS N L        L  L  L+ + +    +
Sbjct: 86  GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 5/114 (4%)

Query: 412 LEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMIL 471
                +R L +LD   +N         +FV +E + L    L              L  L
Sbjct: 21  RTPAAVREL-VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI---SVSNLPKLPKLKKL 76

Query: 472 DLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQ-LCRLNQLQLLDLSNN 524
           +LS N + G +    + L  L++L L+ N L+    ++ L +L  L+ LDL N 
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 8/114 (7%)

Query: 222 NNTKLRQLSLVNDSLVGPFRLPIHSH-KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNI 280
               +R+L L N          + +    L  L +          +     L +L    +
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS---VSNLPKLPKLKKLEL 78

Query: 281 SMNALDGSIPSSFGNMNFLQFLDLSNNQLT--GEIPEHLAMGCVSLRSLALSNN 332
           S N + G +      +  L  L+LS N+L     + E L      L+SL L N 
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLK-KLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 3/99 (3%)

Query: 579 KSITYTYQGRVPSLLSGLDLSCNRL-IGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSN 637
           + I    + R P+ +  L L   +   G I         ++ L+L +  L     S    
Sbjct: 12  RRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPK 69

Query: 638 LRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS 676
           L  ++ L+LS N++   +     +L  L   +++ N L 
Sbjct: 70  LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 6/86 (6%)

Query: 443 IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN--GNIPDRVDGLSQLSYLILAHN 500
           + ++ L     +    EG     + L  L L    L    N+P     L +L  L L+ N
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP----KLPKLKKLELSEN 81

Query: 501 NLEGEVPIQLCRLNQLQLLDLSNNNL 526
            + G + +   +L  L  L+LS N L
Sbjct: 82  RIFGGLDMLAEKLPNLTHLNLSGNKL 107

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 9/97 (9%)

Query: 288 SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLE---GHMFSRNFN 344
            +P    N   L  +DLSNN+++  +          L +L LS N L       F     
Sbjct: 45  LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDG--- 100

Query: 345 LTNLIWLQLEGNHFVGEIPQ-SLSKCSSLQGLFLSNN 380
           L +L  L L GN  +  +P+ + +  S+L  L +  N
Sbjct: 101 LKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 447 HLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGE 505
           +L  N     L      N   L ++DLS N ++  + ++    ++QL  LIL++N L   
Sbjct: 37  YLDGNQF--TLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 506 VPIQLCRLNQLQLLDLSNNNLHGHIP-SCFDN 536
            P     L  L+LL L  N++   +P   F++
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDISV-VPEGAFND 124

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 596 LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 652
           L L  N+    +P ++ N   +  ++LS+N ++     +FSN+  + +L LSYN+L 
Sbjct: 36  LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 38/137 (27%), Positives = 54/137 (39%), Gaps = 8/137 (5%)

Query: 404 NHIEGPIPLEFCQLRILQILDISDNNISGSLPS--CYDFVCIEQVHLSKNMLHGQLKEGT 461
             +       F  L  L  L++  N +  +L +    D   +  + L+ N L   L  G 
Sbjct: 45  TGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-SLPLGV 102

Query: 462 FFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLC-RLNQLQLL 519
           F +   L  L L  N L   +P  V D L++L  L L  N L+  +P     +L  LQ L
Sbjct: 103 FDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTL 160

Query: 520 DLSNNNLHGHIPSCFDN 536
            LS N L       FD 
Sbjct: 161 SLSTNQLQSVPHGAFDR 177

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 23/157 (14%)

Query: 283 NALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN---NLEGHMF 339
             L     ++F  +  L +L+L  NQL   +   +      L +L L+NN   +L   +F
Sbjct: 45  TGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASLPLGVF 103

Query: 340 SRNFNLTNLIWLQLEGNHFVGEIPQSLS-----KCSSLQGLFLSNNSLSGKIPRWLG--- 391
                LT L  L L GN       +SL      + + L+ L L+ N L   IP   G   
Sbjct: 104 DH---LTQLDKLYLGGNQL-----KSLPSGVFDRLTKLKELRLNTNQLQ-SIPA--GAFD 152

Query: 392 NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDN 428
            LT L+ + +  N ++      F +L  LQ + +  N
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 48/201 (23%), Positives = 64/201 (31%), Gaps = 50/201 (24%)

Query: 325 RSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSG 384
             L L +  L     +    LT L WL L+ N               LQ       +LS 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYN--------------QLQ-------TLSA 76

Query: 385 KIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIE 444
            +   L  L  L    +  N +       F  L  L  L +  N +  SLP         
Sbjct: 77  GVFDDLTELGTLG---LANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLP--------- 123

Query: 445 QVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLE 503
                          G F     L  L L+ N L  +IP    D L+ L  L L+ N L+
Sbjct: 124 --------------SGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ 168

Query: 504 GEVPIQLCRLNQLQLLDLSNN 524
                   RL +LQ + L  N
Sbjct: 169 SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 50/184 (27%), Positives = 69/184 (37%), Gaps = 39/184 (21%)

Query: 471 LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI 530
           LDL    L         GL++L++L L +N L+         L +L  L L+NN L    
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 531 PSCFDNTT----LHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQ 586
              FD+ T    L+   N   SL           G+           FD  TK       
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPS---------GV-----------FDRLTK------- 132

Query: 587 GRVPSLLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLD 645
                 L  L L+ N+L   IP      LT +QTL+LS N L       F  L  ++++ 
Sbjct: 133 ------LKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185

Query: 646 LSYN 649
           L  N
Sbjct: 186 LFGN 189

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 39/138 (28%), Positives = 56/138 (40%), Gaps = 19/138 (13%)

Query: 271 ILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALS 330
           I ++ T  ++  N+L       F  +  L  L L  N+L   +P  +     SL  L LS
Sbjct: 26  IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS 84

Query: 331 NN---NLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLS-----KCSSLQGLFLSNNSL 382
            N   +L   +F +   LT L  L L  N       QSL      K + L+ L L  N L
Sbjct: 85  TNQLQSLPNGVFDK---LTQLKELALNTNQL-----QSLPDGVFDKLTQLKDLRLYQNQL 136

Query: 383 SGKIPR-WLGNLTVLRHI 399
              +P      LT L++I
Sbjct: 137 KS-VPDGVFDRLTSLQYI 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 21/140 (15%)

Query: 17  HFKSLKELYMDDARIALNTSFLQIIG-ESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHL 75
             K+ K L +    I       +I     M +++ LSL      N  + ++        L
Sbjct: 46  TLKACKHLALSTNNIE------KISSLSGMENLRILSLGR----NLIKKIENLDAVADTL 95

Query: 76  QELHMADN---DLRGSLPWCLANMTSLRILDVSSNQLIGSISS-SPLIHLTSIEDLILSD 131
           +EL ++ N    L G     +  + +LR+L +S+N+ I +      L  L  +EDL+L+ 
Sbjct: 96  EELWISYNQIASLSG-----IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAG 149

Query: 132 NHFQIPISLEPLFNHSRLKI 151
           N            +  R+++
Sbjct: 150 NPLYNDYKENNATSEYRIEV 169

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 26/128 (20%), Positives = 58/128 (45%), Gaps = 9/128 (7%)

Query: 43  ESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRIL 102
            ++ + ++L+LS     NN   +   L  + +L+ L +  N ++  +    A   +L  L
Sbjct: 45  STLKACKHLALST----NNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEEL 98

Query: 103 DVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAE 162
            +S NQ I S+S   +  L ++  L +S+N       ++ L    +L+      N +  +
Sbjct: 99  WISYNQ-IASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155

Query: 163 IIESHSLT 170
             E+++ +
Sbjct: 156 YKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 37/171 (21%), Positives = 65/171 (38%), Gaps = 40/171 (23%)

Query: 361 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 420
           ++  +LS   + + L LS N++  KI   L  +  LR + + +N I+    L+      L
Sbjct: 39  KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIKKIENLDAV-ADTL 95

Query: 421 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG 480
           + L IS N I+           +  +                   + L +L +S N +  
Sbjct: 96  EELWISYNQIA----------SLSGIE----------------KLVNLRVLYMSNNKITN 129

Query: 481 -NIPDRVDGLSQLSYLILAHNNLEGEVPIQ----------LCRLNQLQLLD 520
               D++  L +L  L+LA N L  +              + RL  L+ LD
Sbjct: 130 WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 18/119 (15%)

Query: 244 IHSHKQLRLLDVSKNNFQGHIPLEIGDI-----LSRLTVFNISMNALDGSIPSSFGNMNF 298
           + + K  + L +S NN        I  I     +  L + ++  N +   I +     + 
Sbjct: 44  LSTLKACKHLALSTNN--------IEKISSLSGMENLRILSLGRNLIK-KIENLDAVADT 94

Query: 299 LQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG-HMFSRNFNLTNLIWLQLEGN 356
           L+ L +S NQ+   +   +    V+LR L +SNN +       +   L  L  L L GN
Sbjct: 95  LEELWISYNQIA-SL-SGIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 596 LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKI 655
           L LS N  I  I   +  +  ++ L+L  N +   I +  +    +E L +SYN+++  +
Sbjct: 53  LALSTNN-IEKISS-LSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIA-SL 108

Query: 656 PYQLVELNTLAVFSVAYNNLS 676
              + +L  L V  ++ N ++
Sbjct: 109 S-GIEKLVNLRVLYMSNNKIT 128

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 42/255 (16%), Positives = 81/255 (31%), Gaps = 27/255 (10%)

Query: 295 NMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLE-------GHMFSRNFNLTN 347
             + L  ++L++ QL       L    +  R L L  N+L          +     +   
Sbjct: 99  GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH--DQCQ 156

Query: 348 LIWLQLEGNHF----VGEIPQSLSKCSSLQGLFLSNNSLSGK----IPRWLGNLTVLRHI 399
           +  L+L  N      V  + + L+  +S+  L L +  L  +    +   L     L+ +
Sbjct: 157 ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQEL 216

Query: 400 IMPKNHIEGPIPLEFCQL----RILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHG 455
            +  N       L   +       L++L +  N +S           +         +  
Sbjct: 217 NVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE--GRQVLRDLGGAAEGGARVVV 274

Query: 456 QLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQL---CR 512
            L EGT  +    +IL     +LN     RV    +L    L  +      P +     R
Sbjct: 275 SLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLR 334

Query: 513 LNQ-LQLLDLSNNNL 526
           +   ++ L     + 
Sbjct: 335 VEGEVRALLEQLGSS 349

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 47.6 bits (113), Expect = 9e-06
 Identities = 39/187 (20%), Positives = 71/187 (37%), Gaps = 8/187 (4%)

Query: 201 LEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSK-NN 259
           ++++ LS+  +     + +L   +KL+ LSL    L  P    +  +  L  L++S  + 
Sbjct: 95  VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG 154

Query: 260 FQGHIPLEIGDILSRLTVFNIS--MNALDGSIPSSFG-NMNFLQFLDLS--NNQLTGEIP 314
           F       +    SRL   N+S   +  +  +  +       +  L+LS     L     
Sbjct: 155 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL 214

Query: 315 EHLAMGCVSLRSLALSN-NNLEGHMFSRNFNLTNLIWLQLEGNHFVGEI-PQSLSKCSSL 372
             L   C +L  L LS+   L+   F   F L  L  L L   + +       L +  +L
Sbjct: 215 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 274

Query: 373 QGLFLSN 379
           + L +  
Sbjct: 275 KTLQVFG 281

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 447 HLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV-DGLSQLSYLILAHNNLEGE 505
            L+ N L     +G F     L+ L+L  N L   I     +G S +  L L  N ++ E
Sbjct: 35  LLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK-E 92

Query: 506 VPIQLC-RLNQLQLLDLSNNNLHGHIPSCFDN 536
           +  ++   L+QL+ L+L +N +   +P  F++
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 30/150 (20%)

Query: 300 QFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN---NLEGHMFSRNFNLTNLIWLQLEGN 356
             L L++N+L     + L      L  L L  N    +E + F      +++  LQL  N
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG---ASHIQELQLGEN 88

Query: 357 HFVGEIPQSLS-----KCSSLQGLFLSNNSLSGKIPRWLG---NLTVLRHIIMPKNHIEG 408
                  + +S         L+ L L +N +S  +    G   +L  L  + +  N    
Sbjct: 89  KI-----KEISNKMFLGLHQLKTLNLYDNQISC-VMP--GSFEHLNSLTSLNLASN---- 136

Query: 409 PIPLEFCQLRILQILD-ISDNNISGSLPSC 437
             P   C   +    + +   +++G    C
Sbjct: 137 --PFN-CNCHLAWFAEWLRKKSLNGGAARC 163

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 9/92 (9%)

Query: 293 FGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLE---GHMFSRNFNLTNLI 349
           FG +  L  L+L  NQLT  I  +   G   ++ L L  N ++     MF     L  L 
Sbjct: 50  FGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIKEISNKMFLG---LHQLK 105

Query: 350 WLQLEGNHFVGEIPQ-SLSKCSSLQGLFLSNN 380
            L L  N  +  +   S    +SL  L L++N
Sbjct: 106 TLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASN 136

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.3 bits (111), Expect = 1e-05
 Identities = 20/178 (11%), Positives = 51/178 (28%), Gaps = 35/178 (19%)

Query: 218 WLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGD----ILS 273
            +L+    L  L +   +      +       L+ L++        +  +I       L 
Sbjct: 166 PVLDAMPLLNNLKIKGTN---NLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLE 222

Query: 274 RLTVFNISMNALDGSIPSSF------GNMNFLQFLDLSNNQLTGEIPEHLAMGCV--SLR 325
           +L ++    +       + F           L++L + + +    + E      +   L 
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE 282

Query: 326 SLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS 383
           ++ +S   L                     +     +   + K   L+ + +  N LS
Sbjct: 283 TMDISAGVL--------------------TDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.6 bits (99), Expect = 4e-04
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 6/104 (5%)

Query: 242 LPIHSHKQLRLLDVSKNNFQGHIPLEIG--DILSRLTVFNISMNALDGS----IPSSFGN 295
                   L+ L +     Q  +       DIL +L   +IS   L       +      
Sbjct: 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDK 305

Query: 296 MNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMF 339
           +  L+F+++  N L+ E+ + L         ++ S    + + +
Sbjct: 306 IKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQEYDDDYSY 349

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.9 bits (97), Expect = 6e-04
 Identities = 31/228 (13%), Positives = 72/228 (31%), Gaps = 29/228 (12%)

Query: 432 GSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQ 491
           G      +        + +N       EG F+  +     ++S+     ++   +D +  
Sbjct: 115 GXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQ-VDLSPVLDAMPL 173

Query: 492 LSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQP 551
           L+ L +   N    + I       L+ L++ +  L   +                 S  P
Sbjct: 174 LNNLKIKGTN---NLSIGKKPRPNLKSLEIISGGLPDSVVEDI-----------LGSDLP 219

Query: 552 FETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI 611
                V+  G++          FD         +       L  L +        +    
Sbjct: 220 NLEKLVLYVGVEDY-------GFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF 272

Query: 612 GN---LTKIQTLNLSHNNL----AGPIPSTFSNLRNIESLDLSYNKLS 652
                L +++T+++S   L    A  +      +++++ +++ YN LS
Sbjct: 273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 52/242 (21%), Positives = 93/242 (38%), Gaps = 69/242 (28%)

Query: 302 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFN-LTNLIWLQLEGNHFVG 360
            +L    +T  + ++      S+  +  +N++++     +    L N+ +L L GN    
Sbjct: 24  ANLKKKSVTDAVTQN---ELNSIDQIIANNSDIK---SVQGIQYLPNVRYLALGGNKL-- 75

Query: 361 EIPQSLS---KCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQL 417
                +S   + ++L  L L+ N L   +P                          F +L
Sbjct: 76  ---HDISALKELTNLTYLILTGNQLQ-SLP-----------------------NGVFDKL 108

Query: 418 RILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNH 477
             L+ L + +N +  SLP                        G F     L  L+L++N 
Sbjct: 109 TNLKELVLVENQLQ-SLPD-----------------------GVFDKLTNLTYLNLAHNQ 144

Query: 478 LNGNIPDRV-DGLSQLSYLILAHNNLEGEVPIQLC-RLNQLQLLDLSNNNLHGHIPS-CF 534
           L  ++P  V D L+ L+ L L++N L+  +P  +  +L QL+ L L  N L   +P   F
Sbjct: 145 LQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVF 201

Query: 535 DN 536
           D 
Sbjct: 202 DR 203

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 45/175 (25%), Positives = 69/175 (39%), Gaps = 11/175 (6%)

Query: 367 SKCS-SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI 425
                      L   S++  + +    L  +  II   + I+         L  ++ L +
Sbjct: 15  DDAFAETIKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVRYLAL 70

Query: 426 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDR 485
             N +   + +  +   +  + L+ N L   L  G F     L  L L  N L  ++PD 
Sbjct: 71  GGNKLH-DISALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQ-SLPDG 127

Query: 486 V-DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPS-CFDNTT 538
           V D L+ L+YL LAHN L+        +L  L  LDLS N L   +P   FD  T
Sbjct: 128 VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLT 181

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 13/134 (9%)

Query: 530 IPS-CFDNTT-LHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSIT-YTYQ 586
            P   F  T   + +  + +          I   +  +   + ++   +           
Sbjct: 13  FPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGG 72

Query: 587 GRVPSL--------LSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPSTFSN 637
            ++  +        L+ L L+ N+L   +P  +   LT ++ L L  N L       F  
Sbjct: 73  NKLHDISALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK 131

Query: 638 LRNIESLDLSYNKL 651
           L N+  L+L++N+L
Sbjct: 132 LTNLTYLNLAHNQL 145

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	788
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.84
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.82
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.69
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.67
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.66
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.65
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.64
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.64
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.64
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.62
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.58
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.55
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.55
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.53
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.44
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.41
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.4
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.35
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.32
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.21
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.2
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.19
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.19
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.73
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.57
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.4
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.33
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.28
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.14
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.01
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.97
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.09
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.94
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.85

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=6.7e-73  Score=660.22  Aligned_cols=683  Identities=29%  Similarity=0.408  Sum_probs=575.3

Q ss_pred             CCceeeecCCCCCCCCCCccEEEcCCcccccCcc---chhHhhhcCCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEE
Q 003893            3 NCEVNGVLSGQGFPHFKSLKELYMDDARIALNTS---FLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELH   79 (788)
Q Consensus         3 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~---~~~~~~~~l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~   79 (788)
                      -|.|.|+.+.     -.++++|+|++  ..+.+.   ++..+.. +++|+.++++.+.+.    .+|..++++++|++|+
T Consensus        39 ~C~w~gv~C~-----~~~v~~L~L~~--~~l~g~~~~l~~~l~~-L~~L~~l~~~~~~~~----~l~~~~~~l~~L~~L~  106 (768)
T 3rgz_A           39 PCTFDGVTCR-----DDKVTSIDLSS--KPLNVGFSAVSSSLLS-LTGLESLFLSNSHIN----GSVSGFKCSASLTSLD  106 (768)
T ss_dssp             GGGSTTEEEE-----TTEEEEEECTT--SCCCEEHHHHHHHTTT-CTTCCEEECTTSCEE----ECCCCCCCCTTCCEEE
T ss_pred             CcCCcceEEC-----CCcEEEEECCC--CCcCCccCccChhHhc-cCcccccCCcCCCcC----CCchhhccCCCCCEEE
Confidence            4888888774     26899999999  777777   7888888 899999999887652    2447899999999999


Q ss_pred             cCCCCCCCCccH--hhhcCCCCCEEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCcc--ccCCCCCccEEEcc
Q 003893           80 MADNDLRGSLPW--CLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLE--PLFNHSRLKIFDAE  155 (788)
Q Consensus        80 L~~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~--~l~~l~~L~~L~l~  155 (788)
                      |++|.+.+.+|.  .++++++|++|++++|.+.+.++...+.++++|++|++++|.+++..+..  .+.++++|++|+++
T Consensus       107 Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls  186 (768)
T 3rgz_A          107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS  186 (768)
T ss_dssp             CCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECC
T ss_pred             CCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECC
Confidence            999999988888  89999999999999999988887633488999999999999998655422  17889999999999


Q ss_pred             CCccchhhhccccCCCCcccccEEEccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCc
Q 003893          156 NNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDS  235 (788)
Q Consensus       156 ~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  235 (788)
                      +|.+.+..+.     ....+|++|++ .++...+.+|. +..+++|++|++++|.+++..+..+ .++++|++|++++|.
T Consensus       187 ~n~l~~~~~~-----~~l~~L~~L~L-s~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~  258 (768)
T 3rgz_A          187 GNKISGDVDV-----SRCVNLEFLDV-SSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQ  258 (768)
T ss_dssp             SSEEESCCBC-----TTCTTCCEEEC-CSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCSSC
T ss_pred             CCcccccCCc-----ccCCcCCEEEC-cCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEECCCCc
Confidence            9998764332     33448999999 77888887777 9999999999999999988888775 899999999999999


Q ss_pred             ccCcCccCccCCCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccch
Q 003893          236 LVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPE  315 (788)
Q Consensus       236 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~  315 (788)
                      +.+..+..  .+++|++|++++|.+++.+|..++..+++|++|++++|.+.+..|..++.+++|++|++++|.+++.+|.
T Consensus       259 l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~  336 (768)
T 3rgz_A          259 FVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM  336 (768)
T ss_dssp             CEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCH
T ss_pred             ccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCH
Confidence            98766554  8899999999999999899998887679999999999999999999999999999999999999889998


Q ss_pred             HHhhCCCCCcEEEccccccCccccccccCCC-ccCceeccCccCcccCCccCCC--CCCCcEEEcccCcCCCCCCccccC
Q 003893          316 HLAMGCVSLRSLALSNNNLEGHMFSRNFNLT-NLIWLQLEGNHFVGEIPQSLSK--CSSLQGLFLSNNSLSGKIPRWLGN  392 (788)
Q Consensus       316 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~l~~  392 (788)
                      ..+..+++|++|++++|.+.+..+..+.+++ +|++|++++|.+.+..+..+..  +++|++|++++|.+.+..|..+..
T Consensus       337 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~  416 (768)
T 3rgz_A          337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN  416 (768)
T ss_dssp             HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG
T ss_pred             HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc
Confidence            8777899999999999999988888888887 9999999999999888887776  889999999999999999999999


Q ss_pred             CCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCC-CCCcccEEEccCcccccccCcccccccccccEE
Q 003893          393 LTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCY-DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMIL  471 (788)
Q Consensus       393 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  471 (788)
                      +++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+ .+++|++|++++|.+.+.+|. .+.++++|++|
T Consensus       417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L  495 (768)
T 3rgz_A          417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS-GLSNCTNLNWI  495 (768)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEE
T ss_pred             CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCH-HHhcCCCCCEE
Confidence            9999999999999999999999999999999999999998888755 489999999999999988887 89999999999


Q ss_pred             eCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCC----
Q 003893          472 DLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGS----  547 (788)
Q Consensus       472 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~----  547 (788)
                      ++++|++++.+|.++..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+.............    
T Consensus       496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~  575 (768)
T 3rgz_A          496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY  575 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEE
T ss_pred             EccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999988765433111100000    


Q ss_pred             ------CCC---CcccceeecCCc-cc-CcccccccceEeeecCceeccc--CCccCCCceEECCCCcccccCccccccc
Q 003893          548 ------SLQ---PFETSFVIMGGM-DV-DPKKQILESFDFTTKSITYTYQ--GRVPSLLSGLDLSCNRLIGHIPPQIGNL  614 (788)
Q Consensus       548 ------~~~---~~~~~~~~~~~~-~~-~~~~~~l~~l~~~~~~~~~~~~--~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  614 (788)
                            ...   ..........+. .. ..........++..+...-...  ....++|+.||+++|++++.+|..++.+
T Consensus       576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l  655 (768)
T 3rgz_A          576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM  655 (768)
T ss_dssp             EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC
T ss_pred             cccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc
Confidence                  000   000000000000 00 0000011111111111111000  1112479999999999999999999999


Q ss_pred             ccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCc
Q 003893          615 TKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSY  694 (788)
Q Consensus       615 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~  694 (788)
                      ++|+.|+|++|++++.+|..|+++++|++|||++|++++.+|..+..+++|++||+++|+++|.+|+. .++.++...++
T Consensus       656 ~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~  734 (768)
T 3rgz_A          656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKF  734 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGG
T ss_pred             ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999986 78899999999


Q ss_pred             CCCCCCCCCCCCCCCC
Q 003893          695 EGNPFLCGPPLPICIS  710 (788)
Q Consensus       695 ~~Np~~C~~~~~~~~~  710 (788)
                      .|||..||.++. .|.
T Consensus       735 ~gN~~Lcg~~l~-~C~  749 (768)
T 3rgz_A          735 LNNPGLCGYPLP-RCD  749 (768)
T ss_dssp             CSCTEEESTTSC-CCC
T ss_pred             cCCchhcCCCCc-CCC
Confidence            999999998876 443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5e-66  Score=602.29  Aligned_cols=593  Identities=27%  Similarity=0.383  Sum_probs=476.4

Q ss_pred             CCCCCCCCccEEEcCCcccccCccchh--HhhhcCCCCCEEeCCCCCCCCcccCCCCc-cCCCCCCCEEEcCCCCCCCCc
Q 003893           13 QGFPHFKSLKELYMDDARIALNTSFLQ--IIGESMPSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSL   89 (788)
Q Consensus        13 ~~l~~l~~L~~L~L~~~~~~~~~~~~~--~~~~~l~~L~~L~L~~~~l~~~~~~l~~~-l~~l~~L~~L~L~~n~i~~~~   89 (788)
                      +.|.++++|++|+|++  +.+.+.+|.  .++. +++|++|++++|.+.+..+   .. +.++++|++|++++|++++..
T Consensus        94 ~~~~~l~~L~~L~Ls~--n~l~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~  167 (768)
T 3rgz_A           94 SGFKCSASLTSLDLSR--NSLSGPVTTLTSLGS-CSGLKFLNVSSNTLDFPGK---VSGGLKLNSLEVLDLSANSISGAN  167 (768)
T ss_dssp             CCCCCCTTCCEEECCS--SEEEEEGGGGGGGGG-CTTCCEEECCSSEEECCSS---CCSCCCCTTCSEEECCSSCCEEET
T ss_pred             hhhccCCCCCEEECCC--CcCCCcCCChHHHhC-CCCCCEEECcCCccCCcCC---HHHhccCCCCCEEECCCCccCCcC
Confidence            4688888888888888  666676776  7777 8888888888888766554   33 377888888888888888777


Q ss_pred             cHh---hhcCCCCCEEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCccccCCCCCccEEEccCCccchhhhcc
Q 003893           90 PWC---LANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIES  166 (788)
Q Consensus        90 ~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  166 (788)
                      |..   +.++++|++|++++|.+.+..+   +..+++|++|++++|.+++.++.  +.++++|++|++++|.+.+..+..
T Consensus       168 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~  242 (768)
T 3rgz_A          168 VVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRA  242 (768)
T ss_dssp             HHHHHHTTCCTTCCEEECCSSEEESCCB---CTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHH
T ss_pred             ChhhhhhccCCCCCEEECCCCcccccCC---cccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHH
Confidence            766   6788888888888888876544   37788888888888888766653  788888888888888887655544


Q ss_pred             ccCCCCcccccEEEccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccC
Q 003893          167 HSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHS  246 (788)
Q Consensus       167 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  246 (788)
                      +   ....+|++|++ ..+...+..|..  .+++|++|++++|.+++.+|..+...+++|++|++++|.+++..+..+..
T Consensus       243 l---~~l~~L~~L~L-s~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~  316 (768)
T 3rgz_A          243 I---STCTELKLLNI-SSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS  316 (768)
T ss_dssp             T---TTCSSCCEEEC-CSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG
T ss_pred             H---hcCCCCCEEEC-CCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc
Confidence            3   23347888888 666666666655  77888888888888887788776555688888888888888888888888


Q ss_pred             CCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCC-CCCEEEccCCcCCCccchHHhh-CCCCC
Q 003893          247 HKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMN-FLQFLDLSNNQLTGEIPEHLAM-GCVSL  324 (788)
Q Consensus       247 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~-~l~~L  324 (788)
                      +++|++|++++|.+.+.+|...+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+++.+|..+.. .+++|
T Consensus       317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L  396 (768)
T 3rgz_A          317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL  396 (768)
T ss_dssp             CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred             CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence            888888888888888788877555578888888888888877888887776 8888888888887666666542 15678


Q ss_pred             cEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCC
Q 003893          325 RSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKN  404 (788)
Q Consensus       325 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  404 (788)
                      ++|++++|.+++..+..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|
T Consensus       397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N  476 (768)
T 3rgz_A          397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN  476 (768)
T ss_dssp             CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred             cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence            88888888888777888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             eeccCchhhhhcccCCcEEeccCCcCCCCCCCCC-CCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCC
Q 003893          405 HIEGPIPLEFCQLRILQILDISDNNISGSLPSCY-DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP  483 (788)
Q Consensus       405 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~  483 (788)
                      .+.+..|..+..+++|++|++++|++.+..|..+ .+++|+.|++++|.+.+.+|. .+..+++|++|++++|++.+.+|
T Consensus       477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~g~ip  555 (768)
T 3rgz_A          477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA-ELGDCRSLIWLDLNTNLFNGTIP  555 (768)
T ss_dssp             CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG-GGGGCTTCCEEECCSSEEESBCC
T ss_pred             cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH-HHcCCCCCCEEECCCCccCCcCC
Confidence            8888888888888888888888888887777655 478888888888888877776 78888888888888888887777


Q ss_pred             ccccCCcCCc----------------------------------------------EEEccCccCcccCcccccCCCCCC
Q 003893          484 DRVDGLSQLS----------------------------------------------YLILAHNNLEGEVPIQLCRLNQLQ  517 (788)
Q Consensus       484 ~~~~~l~~L~----------------------------------------------~L~L~~n~l~~~~~~~~~~l~~L~  517 (788)
                      ..+.....+.                                              .+++..|.+.+..|..+..+++|+
T Consensus       556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~  635 (768)
T 3rgz_A          556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM  635 (768)
T ss_dssp             GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred             hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence            7655433322                                              233344556666777788889999


Q ss_pred             EEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEE
Q 003893          518 LLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLD  597 (788)
Q Consensus       518 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~  597 (788)
                      .||+++|++++.+|..+..++                                                     .|+.|+
T Consensus       636 ~LdLs~N~l~g~ip~~l~~l~-----------------------------------------------------~L~~L~  662 (768)
T 3rgz_A          636 FLDMSYNMLSGYIPKEIGSMP-----------------------------------------------------YLFILN  662 (768)
T ss_dssp             EEECCSSCCBSCCCGGGGGCT-----------------------------------------------------TCCEEE
T ss_pred             EEECcCCcccccCCHHHhccc-----------------------------------------------------cCCEEe
Confidence            999999999999998887776                                                     899999


Q ss_pred             CCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcc
Q 003893          598 LSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG  677 (788)
Q Consensus       598 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~  677 (788)
                      |++|.+++.+|..++.+++|+.|||++|++++.+|..++.+++|++||+++|++++.+|.. ..+.++....+.+|+--|
T Consensus       663 Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lc  741 (768)
T 3rgz_A          663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLC  741 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEE
T ss_pred             CcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhc
Confidence            9999999999999999999999999999999999999999999999999999999999975 334455556677886443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.1e-60  Score=549.49  Aligned_cols=594  Identities=20%  Similarity=0.222  Sum_probs=481.6

Q ss_pred             cEEEcCCcccccCccchhHhhhcCCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcCCCCCE
Q 003893           22 KELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRI  101 (788)
Q Consensus        22 ~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  101 (788)
                      +.++.++  ..+. .+|..+.   +++++|++++|.+.+..+   ..+.++++|++|++++|.+++..|..|+++++|++
T Consensus         7 ~~~~cs~--~~L~-~ip~~~~---~~l~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~   77 (680)
T 1ziw_A            7 EVADCSH--LKLT-QVPDDLP---TNITVLNLTHNQLRRLPA---ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKV   77 (680)
T ss_dssp             SEEECCS--SCCS-SCCSCSC---TTCSEEECCSSCCCCCCG---GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCE
T ss_pred             CeeECCC--CCcc-ccccccC---CCCcEEECCCCCCCCcCH---HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCE
Confidence            4566666  3332 2343333   478899999888876554   56888889999999999888888888889999999


Q ss_pred             EeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCccccCCCCCccEEEccCCccchhhhccccCCCCcccccEEEc
Q 003893          102 LDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLL  181 (788)
Q Consensus       102 L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l  181 (788)
                      |++++|.+. .+|...|.++++|++|++++|.+++ ++...+.++++|++|++++|.+.+                    
T Consensus        78 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~--------------------  135 (680)
T 1ziw_A           78 LNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSS--------------------  135 (680)
T ss_dssp             EECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSC--------------------
T ss_pred             EECCCCccC-ccChhhhccCCCCCEEECCCCccCc-cChhHccccCCCCEEECCCCcccc--------------------
Confidence            999988887 5565468888999999999888864 443567888888888888887532                    


Q ss_pred             cCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHH-hhcCCCCCEEEccCCcccCcCccCccCCCCcCEEEccCCcC
Q 003893          182 SSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWL-LENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNF  260 (788)
Q Consensus       182 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  260 (788)
                              ..+..+..+++|++|++++|.+++..+..+ ...+++|++|++++|.+++..+..+..+++|+.++++++.+
T Consensus       136 --------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l  207 (680)
T 1ziw_A          136 --------TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL  207 (680)
T ss_dssp             --------CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCC
T ss_pred             --------cCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcccccc
Confidence                    234456678889999999998876655543 12568899999999998888888888888999999988877


Q ss_pred             cccCChhhhh--cCCCCcEEEeeCCcCCCCCCccccCCCC--CCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCc
Q 003893          261 QGHIPLEIGD--ILSRLTVFNISMNALDGSIPSSFGNMNF--LQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG  336 (788)
Q Consensus       261 ~~~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~  336 (788)
                      .......+..  ..++|++|++++|.+.+..+..+..++.  |++|++++|.++ .++...+..+++|++|++++|.+.+
T Consensus       208 ~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~  286 (680)
T 1ziw_A          208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQH  286 (680)
T ss_dssp             HHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSCCBSE
T ss_pred             ChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC-ccCcccccCcccccEeeCCCCccCc
Confidence            5332222211  1368999999999998888888887755  999999999988 5554455678999999999999988


Q ss_pred             cccccccCCCccCceeccCccCcc-----cCC----ccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeec
Q 003893          337 HMFSRNFNLTNLIWLQLEGNHFVG-----EIP----QSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE  407 (788)
Q Consensus       337 ~~~~~~~~l~~L~~L~l~~n~~~~-----~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  407 (788)
                      ..+..+.++++|++|++++|...+     .+|    ..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus       287 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~  366 (680)
T 1ziw_A          287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS  366 (680)
T ss_dssp             ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSC
T ss_pred             cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchh
Confidence            888888899999999998875442     122    36788999999999999999888888999999999999998753


Q ss_pred             c--Cchhhhhcc--cCCcEEeccCCcCCCCCCCCC-CCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCC
Q 003893          408 G--PIPLEFCQL--RILQILDISDNNISGSLPSCY-DFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNI  482 (788)
Q Consensus       408 ~--~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~  482 (788)
                      .  .....|..+  ++|+.|++++|++.+..+..+ .+++|+.|++++|.+.+.++...|.++++|++|++++|++.+..
T Consensus       367 ~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  446 (680)
T 1ziw_A          367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT  446 (680)
T ss_dssp             CCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC
T ss_pred             hhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeC
Confidence            2  223344433  589999999999988777655 48999999999999988888778999999999999999998888


Q ss_pred             CccccCCcCCcEEEccCccCc--ccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecC
Q 003893          483 PDRVDGLSQLSYLILAHNNLE--GEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMG  560 (788)
Q Consensus       483 ~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (788)
                      +..|..+++|+.|++++|.+.  +..|..+..+++|++|++++|++++..+..|..+.                      
T Consensus       447 ~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~----------------------  504 (680)
T 1ziw_A          447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE----------------------  504 (680)
T ss_dssp             TTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT----------------------
T ss_pred             hhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccc----------------------
Confidence            889999999999999999986  46788899999999999999999988887776665                      


Q ss_pred             CcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCc--------ccccccccCCeEeCCCCCCCCCCC
Q 003893          561 GMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIP--------PQIGNLTKIQTLNLSHNNLAGPIP  632 (788)
Q Consensus       561 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~  632 (788)
                                                     +|++|++++|.+++..+        ..|.++++|+.|+|++|+++.+.+
T Consensus       505 -------------------------------~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~  553 (680)
T 1ziw_A          505 -------------------------------KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV  553 (680)
T ss_dssp             -------------------------------TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             -------------------------------ccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH
Confidence                                           89999999999986522        347889999999999999997767


Q ss_pred             cccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCcc-ccCCCCcCCcCCCCCCCCCCC-CCC
Q 003893          633 STFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAA-QFATFNESSYEGNPFLCGPPL-PIC  708 (788)
Q Consensus       633 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~-~~~~l~~~~~~~Np~~C~~~~-~~~  708 (788)
                      ..|.++++|++|++++|++++..+..|..+++|+.|++++|++++..|..+. .+++++.+++.+|||.|+|+. .+.
T Consensus       554 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~  631 (680)
T 1ziw_A          554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWF  631 (680)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSE
T ss_pred             HHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHH
Confidence            7899999999999999999987777889999999999999999998887776 789999999999999999985 443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.6e-57  Score=525.00  Aligned_cols=583  Identities=21%  Similarity=0.175  Sum_probs=400.9

Q ss_pred             CCccEEEcCCcccccCccchhHhhhcCCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcCCC
Q 003893           19 KSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTS   98 (788)
Q Consensus        19 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~   98 (788)
                      +++++|++++  +.+.+..+..+.. +++|++|++++|.+.+..+   ..+.++++|++|+|++|++++..+..|+++++
T Consensus        25 ~~l~~L~Ls~--n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~   98 (680)
T 1ziw_A           25 TNITVLNLTH--NQLRRLPAANFTR-YSQLTSLDVGFNTISKLEP---ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN   98 (680)
T ss_dssp             TTCSEEECCS--SCCCCCCGGGGGG-GTTCSEEECCSSCCCCCCT---THHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCCcEEECCC--CCCCCcCHHHHhC-CCcCcEEECCCCccCccCH---HHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence            6899999999  6777777777888 9999999999999987665   67899999999999999999777778999999


Q ss_pred             CCEEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCccccCCCCCccEEEccCCccchhhhccccCCCCcccccE
Q 003893           99 LRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQS  178 (788)
Q Consensus        99 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~  178 (788)
                      |++|++++|.+.+ ++...++++++|++|++++|.+++..+ ..+.++++|++|++++|.+.+..+..+.. ....+|++
T Consensus        99 L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~  175 (680)
T 1ziw_A           99 LTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKL-GTQVQLENLQELLLSNNKIQALKSEELDI-FANSSLKK  175 (680)
T ss_dssp             CSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCCCC-CSSSCCTTCCEEECCSSCCCCBCHHHHGG-GTTCEESE
T ss_pred             CCEEECCCCccCc-cChhHccccCCCCEEECCCCcccccCc-hhhcccccCCEEEccCCcccccCHHHhhc-cccccccE
Confidence            9999999999984 554389999999999999999986544 57889999999999999876543332111 01124444


Q ss_pred             EEccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCcCEEEccCC
Q 003893          179 LLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKN  258 (788)
Q Consensus       179 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n  258 (788)
                      |++ ..+...+..+..+..+.+|+.+++.++.+.+.....+..                     . ...++|+.|++++|
T Consensus       176 L~L-~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~---------------------~-l~~~~L~~L~L~~n  232 (680)
T 1ziw_A          176 LEL-SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCL---------------------E-LANTSIRNLSLSNS  232 (680)
T ss_dssp             EEC-TTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHH---------------------H-HTTSCCCEEECTTS
T ss_pred             EEC-CCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHH---------------------H-hhhccccEEEccCC
Confidence            554 333444444444444444444444444432211111100                     0 01244555555555


Q ss_pred             cCcccCChhhhhc-CCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccC--
Q 003893          259 NFQGHIPLEIGDI-LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLE--  335 (788)
Q Consensus       259 ~l~~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~--  335 (788)
                      .+.+..|..+... .++|++|++++|.+.+..+..|..+++|++|++++|.++ .++...+.++++|++|++++|...  
T Consensus       233 ~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~~~~~~~  311 (680)
T 1ziw_A          233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ-HLFSHSLHGLFNVRYLNLKRSFTKQS  311 (680)
T ss_dssp             CCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBS-EECTTTTTTCTTCCEEECTTCBCCC-
T ss_pred             cccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccC-ccChhhhcCCCCccEEeccchhhhcc
Confidence            5544333333321 123555555555555444455555555555555555555 222222334555555555544322  


Q ss_pred             -------ccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCC--CCCccccC--CCCccEEEccCC
Q 003893          336 -------GHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSG--KIPRWLGN--LTVLRHIIMPKN  404 (788)
Q Consensus       336 -------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~--l~~L~~L~l~~n  404 (788)
                             ......+..+++|++|++++|.+.+..+..|.++++|++|++++|.+..  .....+..  .++|+.|++++|
T Consensus       312 ~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n  391 (680)
T 1ziw_A          312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN  391 (680)
T ss_dssp             -----CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS
T ss_pred             cccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC
Confidence                   1112245556666666666666666666666666666666666665331  11122222  246677777777


Q ss_pred             eeccCchhhhhcccCCcEEeccCCcCCCCCC--CCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccC--C
Q 003893          405 HIEGPIPLEFCQLRILQILDISDNNISGSLP--SCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN--G  480 (788)
Q Consensus       405 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~--~  480 (788)
                      .+.+..+.++..+++|+.|++++|.+.+..+  .+..+++|++|++++|.+.+. +...|..+++|++|++++|.+.  +
T Consensus       392 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~  470 (680)
T 1ziw_A          392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL-TRNSFALVPSLQRLMLRRVALKNVD  470 (680)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEEC-CTTTTTTCTTCCEEECTTSCCBCTT
T ss_pred             CCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCccee-ChhhhhcCcccccchhccccccccc
Confidence            7766666666677777777777776665443  223466777777777776543 3348888999999999999886  4


Q ss_pred             CCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecC
Q 003893          481 NIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMG  560 (788)
Q Consensus       481 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (788)
                      ..|..+..+++|+.|++++|++++..+..+.++++|++|++++|++++..+..+.....                     
T Consensus       471 ~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~---------------------  529 (680)
T 1ziw_A          471 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI---------------------  529 (680)
T ss_dssp             CSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCC---------------------
T ss_pred             cCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcc---------------------
Confidence            67888999999999999999999888888999999999999999998654332211000                     


Q ss_pred             CcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCC
Q 003893          561 GMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRN  640 (788)
Q Consensus       561 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  640 (788)
                                             ... .-.++|++|++++|+++...+..|.++++|+.|+|++|+++++.+..|..+++
T Consensus       530 -----------------------~~~-~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~  585 (680)
T 1ziw_A          530 -----------------------YFL-KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS  585 (680)
T ss_dssp             -----------------------CTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             -----------------------hhh-cCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCC
Confidence                                   000 01137999999999999766678999999999999999999888888999999


Q ss_pred             CCeeeCCCcccCccCchhhh-cCCCCcEEecccCcCcccCC
Q 003893          641 IESLDLSYNKLSWKIPYQLV-ELNTLAVFSVAYNNLSGKIP  680 (788)
Q Consensus       641 L~~L~Ls~N~l~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~  680 (788)
                      |++|++++|++++..+..+. .+++|+.+++++|++.|..+
T Consensus       586 L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          586 LKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             CCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             CCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            99999999999988888887 78999999999999999866

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.3e-55  Score=519.77  Aligned_cols=522  Identities=22%  Similarity=0.191  Sum_probs=355.8

Q ss_pred             CCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCc-cHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCCC
Q 003893           45 MPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSL-PWCLANMTSLRILDVSSNQLIGSISSSPLIHLTS  123 (788)
Q Consensus        45 l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~  123 (788)
                      .++|++|+|++|.++...+   .++.++++|++|+|++|...+.+ |.+|.++++|++|+|++|.+.+..|. .|.++++
T Consensus        23 p~~l~~LdLs~N~i~~i~~---~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~-~~~~l~~   98 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTA---SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD-AFQGLFH   98 (844)
T ss_dssp             CTTCCEEEEESCCCCEECS---SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT-SSCSCSS
T ss_pred             CCCcCEEECCCCcCCccCh---hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh-HccCCcc
Confidence            4689999999998876655   67889999999999999655444 78889999999999999988866565 8889999


Q ss_pred             CCEEEcCCCcccCccCc-cccCCCCCccEEEccCCccchhhhccccCCCCcccccEEEccCCCcCCccCCccccCCCCCc
Q 003893          124 IEDLILSDNHFQIPISL-EPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLE  202 (788)
Q Consensus       124 L~~L~l~~n~~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  202 (788)
                      |++|++++|.+++..+. ..+.++++|+.|++++|.+.+.                           ..+..+.++++|+
T Consensus        99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~---------------------------~~~~~~~~L~~L~  151 (844)
T 3j0a_A           99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL---------------------------YLHPSFGKLNSLK  151 (844)
T ss_dssp             CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC---------------------------CCCGGGGTCSSCC
T ss_pred             cCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc---------------------------ccchhHhhCCCCC
Confidence            99999999988764432 2477888888888888876321                           1234567888888


Q ss_pred             EEEecCCCCCccCchHHhhcC--CCCCEEEccCCcccCcCccCccCCCC------cCEEEccCCcCcccCChhhhhcC--
Q 003893          203 YVRLSHIKMNEEFPNWLLENN--TKLRQLSLVNDSLVGPFRLPIHSHKQ------LRLLDVSKNNFQGHIPLEIGDIL--  272 (788)
Q Consensus       203 ~L~l~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~------L~~L~l~~n~l~~~~~~~~~~~~--  272 (788)
                      +|++++|.+++..+..+ ..+  ++|+.|++++|.+.+..+..+..+++      |+.|++++|.+.+..+..+...+  
T Consensus       152 ~L~Ls~N~i~~~~~~~l-~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~  230 (844)
T 3j0a_A          152 SIDFSSNQIFLVCEHEL-EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK  230 (844)
T ss_dssp             EEEEESSCCCCCCSGGG-HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred             EEECCCCcCCeeCHHHc-ccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence            99998888877666654 444  78888888888887766665555544      78888888877766666655432  


Q ss_pred             CCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCC--CCCcEEEccccccCccccccccCCCccCc
Q 003893          273 SRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGC--VSLRSLALSNNNLEGHMFSRNFNLTNLIW  350 (788)
Q Consensus       273 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~  350 (788)
                      .+++.+.++.+.....               +..+.+. ......+.++  ++|++|++++|.+.+..+..+..+++|+.
T Consensus       231 ~~l~~L~l~~~~~~~~---------------~~~~~l~-~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  294 (844)
T 3j0a_A          231 SQAFSLILAHHIMGAG---------------FGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV  294 (844)
T ss_dssp             CCBSEEECCSSCCBCS---------------SSCSSST-TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCE
T ss_pred             ccccceeccccccccc---------------ccccccC-CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCE
Confidence            3566666654332210               1122232 2222222222  57888888888777777777777788888


Q ss_pred             eeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcC
Q 003893          351 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNI  430 (788)
Q Consensus       351 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  430 (788)
                      |++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+
T Consensus       295 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l  374 (844)
T 3j0a_A          295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL  374 (844)
T ss_dssp             EEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred             EECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCC
Confidence            88888888777777777888888888888888777777777788888888888877766666777778888888888776


Q ss_pred             CCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccC-ccc
Q 003893          431 SGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEV-PIQ  509 (788)
Q Consensus       431 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~  509 (788)
                      ++.                             ..+++|+.|++++|+++ .+|..   ..+++.|++++|++.+.. +..
T Consensus       375 ~~i-----------------------------~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~  421 (844)
T 3j0a_A          375 TTI-----------------------------HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYF  421 (844)
T ss_dssp             CCC-----------------------------SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHH
T ss_pred             Ccc-----------------------------cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhh
Confidence            521                             11344555555555554 22221   234555555555555321 112


Q ss_pred             ccCCCCCCEEEccCCcCCccCccc-ccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCC
Q 003893          510 LCRLNQLQLLDLSNNNLHGHIPSC-FDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGR  588 (788)
Q Consensus       510 ~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~  588 (788)
                      +..+++|++|++++|++++..+.. +..                                                    
T Consensus       422 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~----------------------------------------------------  449 (844)
T 3j0a_A          422 LLRVPHLQILILNQNRFSSCSGDQTPSE----------------------------------------------------  449 (844)
T ss_dssp             HTTCTTCCEEEEESCCCCCCCSSSSSCS----------------------------------------------------
T ss_pred             hhcCCccceeeCCCCccccccccccccc----------------------------------------------------
Confidence            345566666666666655432211 100                                                    


Q ss_pred             ccCCCceEECCCCccc-----ccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCC
Q 003893          589 VPSLLSGLDLSCNRLI-----GHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELN  663 (788)
Q Consensus       589 ~~~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~  663 (788)
                       .++|+.|++++|.++     +..+..|.++++|+.|+|++|++++..|..|.++++|++|+|++|++++..+..+.  +
T Consensus       450 -~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~  526 (844)
T 3j0a_A          450 -NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--A  526 (844)
T ss_dssp             -CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--S
T ss_pred             -CCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--c
Confidence             125666666666654     33445677777888888888888877777777888888888888888766655554  6


Q ss_pred             CCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCCCCCC
Q 003893          664 TLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL  705 (788)
Q Consensus       664 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~  705 (788)
                      +|+.|++++|++++.+|..+   ..+..+++.+|||.|+|+.
T Consensus       527 ~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          527 NLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             CCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSC
T ss_pred             cccEEECCCCcCCCCChhHh---CCcCEEEecCCCccccccc
Confidence            78888888888887777654   3566777888888887764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.2e-54  Score=490.66  Aligned_cols=541  Identities=19%  Similarity=0.202  Sum_probs=342.8

Q ss_pred             EEEcCCcccccCccchhHhhhcCCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcCCCCCEE
Q 003893           23 ELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRIL  102 (788)
Q Consensus        23 ~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  102 (788)
                      .++.++  ..+ ..+|..++.   ++++|++++|.+++..+   .++.++++|++|+|++|++.+..|.+|+++++|++|
T Consensus        16 ~~~c~~--~~l-~~iP~~l~~---~l~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   86 (606)
T 3t6q_A           16 TYNCEN--LGL-NEIPGTLPN---STECLEFSFNVLPTIQN---TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTL   86 (606)
T ss_dssp             EEECTT--SCC-SSCCTTSCT---TCCEEECTTCCCSEECT---TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             eEECCC--CCc-ccCcCCCCC---cCcEEEccCCccCcCCh---hHhccCccceEEECCCCccceeChhhccCccccCee
Confidence            455555  322 234444444   67888888887765544   567788888888888888777777778888888888


Q ss_pred             eCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCccccCCCCCccEEEccCCccchhhhccccCCCCcccccEEEcc
Q 003893          103 DVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLS  182 (788)
Q Consensus       103 ~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~  182 (788)
                      ++++|.+.+..|. .++++++|++|++++|.+++..+ ..+.++++|++|++++|.+.+..                   
T Consensus        87 ~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~l~~-~~~~~l~~L~~L~L~~n~l~~~~-------------------  145 (606)
T 3t6q_A           87 VLTANPLIFMAET-ALSGPKALKHLFFIQTGISSIDF-IPLHNQKTLESLYLGSNHISSIK-------------------  145 (606)
T ss_dssp             ECTTCCCSEECTT-TTSSCTTCCEEECTTSCCSCGGG-SCCTTCTTCCEEECCSSCCCCCC-------------------
T ss_pred             eCCCCcccccChh-hhcccccccEeeccccCcccCCc-chhccCCcccEEECCCCcccccC-------------------
Confidence            8888877755454 67778888888888887764222 35667777777777776653210                   


Q ss_pred             CCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCC--EEEccCCcccCcCccCccCCCCcCEEEccCCcC
Q 003893          183 SGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLR--QLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNF  260 (788)
Q Consensus       183 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  260 (788)
                              .|.. ..+++|++|++++|.+++..+.. ++.+++|+  +|++++|.+.+..+..+.. ..|+.|++++|..
T Consensus       146 --------~~~~-~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~  214 (606)
T 3t6q_A          146 --------LPKG-FPTEKLKVLDFQNNAIHYLSKED-MSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN  214 (606)
T ss_dssp             --------CCTT-CCCTTCCEEECCSSCCCEECHHH-HHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC
T ss_pred             --------cccc-cCCcccCEEEcccCcccccChhh-hhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchh
Confidence                    1111 22556666666666665444433 35566666  5566666555544444322 3555555555531


Q ss_pred             cccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCC--CCcEEEccccccCccc
Q 003893          261 QGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCV--SLRSLALSNNNLEGHM  338 (788)
Q Consensus       261 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~--~L~~L~l~~n~i~~~~  338 (788)
                         ++..+. .+.+++...+.......           +        ... .++...+.++.  +|++|++++|.+++..
T Consensus       215 ---~~~~~~-~l~~~~l~~l~~~~~~~-----------~--------~~~-~i~~~~~~~l~~~~L~~L~l~~n~l~~~~  270 (606)
T 3t6q_A          215 ---LLVIFK-GLKNSTIQSLWLGTFED-----------M--------DDE-DISPAVFEGLCEMSVESINLQKHYFFNIS  270 (606)
T ss_dssp             ---HHHHHH-HTTTCEEEEEECCCCTT-----------S--------CCC-CCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred             ---HHHHhh-hccccchhheechhhcc-----------c--------ccc-ccChhHhchhhcCceeEEEeecCccCccC
Confidence               111111 12333322222111110           0        000 11222222222  4566666666666555


Q ss_pred             cccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchh-hhhcc
Q 003893          339 FSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPL-EFCQL  417 (788)
Q Consensus       339 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~l  417 (788)
                      +..|.++++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+. .+..+
T Consensus       271 ~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l  349 (606)
T 3t6q_A          271 SNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL  349 (606)
T ss_dssp             TTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred             HHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence            555555666666666666655 4455555666666666666666555555555566666666666655533322 35555


Q ss_pred             cCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEc
Q 003893          418 RILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLIL  497 (788)
Q Consensus       418 ~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L  497 (788)
                      ++|++|++++|.+.+..                     ..+ ..+..+++|++|++++|++.+..+..+..+++|++|++
T Consensus       350 ~~L~~L~l~~n~l~~~~---------------------~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  407 (606)
T 3t6q_A          350 ENLRELDLSHDDIETSD---------------------CCN-LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL  407 (606)
T ss_dssp             TTCCEEECCSSCCCEEE---------------------EST-TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEEC
T ss_pred             CcCCEEECCCCcccccc---------------------Ccc-hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEEC
Confidence            66666666665554221                     002 25666777777777777777666777777777777777


Q ss_pred             cCccCcccCcc-cccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEe
Q 003893          498 AHNNLEGEVPI-QLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDF  576 (788)
Q Consensus       498 ~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  576 (788)
                      ++|++.+..+. .+..+++|++|++++|.+.+..|..+..++                                      
T Consensus       408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--------------------------------------  449 (606)
T 3t6q_A          408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP--------------------------------------  449 (606)
T ss_dssp             TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT--------------------------------------
T ss_pred             CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCC--------------------------------------
Confidence            77777655443 367777778888877777766666655544                                      


Q ss_pred             eecCceecccCCccCCCceEECCCCccccc---CcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCc
Q 003893          577 TTKSITYTYQGRVPSLLSGLDLSCNRLIGH---IPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW  653 (788)
Q Consensus       577 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  653 (788)
                                     +|++|++++|.+++.   .+..+..+++|+.|++++|++++..|..|..+++|++|++++|++++
T Consensus       450 ---------------~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  514 (606)
T 3t6q_A          450 ---------------ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS  514 (606)
T ss_dssp             ---------------TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred             ---------------CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc
Confidence                           677788888877652   23567888888888888888888888888888889999999998888


Q ss_pred             cCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCCCCCC
Q 003893          654 KIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL  705 (788)
Q Consensus       654 ~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~  705 (788)
                      ..|..+..+++| .|++++|++++.+|..+..+++++.+++.+|||.|+|+.
T Consensus       515 ~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          515 SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             GGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             CChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            888888888888 889999988888888788888888888999999998874

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=8.4e-52  Score=472.42  Aligned_cols=519  Identities=22%  Similarity=0.227  Sum_probs=355.8

Q ss_pred             CCccEEEcCCcccccCccchhHhhhcCCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcCCC
Q 003893           19 KSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTS   98 (788)
Q Consensus        19 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~   98 (788)
                      +++++|++++  +.+.+..+..+.. +++|++|++++|.+....+   .+|.++++|++|+|++|++.+..|..|+++++
T Consensus        33 ~~l~~L~Ls~--n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  106 (606)
T 3t6q_A           33 NSTECLEFSF--NVLPTIQNTTFSR-LINLTFLDLTRCQIYWIHE---DTFQSQHRLDTLVLTANPLIFMAETALSGPKA  106 (606)
T ss_dssp             TTCCEEECTT--CCCSEECTTTSTT-CTTCSEEECTTCCCCEECT---TTTTTCTTCCEEECTTCCCSEECTTTTSSCTT
T ss_pred             CcCcEEEccC--CccCcCChhHhcc-CccceEEECCCCccceeCh---hhccCccccCeeeCCCCcccccChhhhccccc
Confidence            3799999999  7777777788888 9999999999999877655   78999999999999999999888999999999


Q ss_pred             CCEEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCccccCCCCCccEEEccCCccchhhhccccCCCCcccccE
Q 003893           99 LRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQS  178 (788)
Q Consensus        99 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~  178 (788)
                      |++|++++|.+.+..+. .+.++++|++|++++|.+++ ++...+..+++|+.|++++|.+.+.                
T Consensus       107 L~~L~L~~n~i~~l~~~-~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~----------------  168 (606)
T 3t6q_A          107 LKHLFFIQTGISSIDFI-PLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYL----------------  168 (606)
T ss_dssp             CCEEECTTSCCSCGGGS-CCTTCTTCCEEECCSSCCCC-CCCCTTCCCTTCCEEECCSSCCCEE----------------
T ss_pred             ccEeeccccCcccCCcc-hhccCCcccEEECCCCcccc-cCcccccCCcccCEEEcccCccccc----------------
Confidence            99999999999853334 78999999999999999975 2323555699999999999987532                


Q ss_pred             EEccCCCcCCccCCccccCCCCCc--EEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCcCEEEcc
Q 003893          179 LLLSSGYRDGITFPKFLYNQHDLE--YVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVS  256 (788)
Q Consensus       179 L~l~~~~~~~~~~~~~l~~~~~L~--~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  256 (788)
                                  .+..+..+++|+  .|++++|.+++..+..+  ...+|++|++++|...   +..+..+..++...+.
T Consensus       169 ------------~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~~~~~---~~~~~~l~~~~l~~l~  231 (606)
T 3t6q_A          169 ------------SKEDMSSLQQATNLSLNLNGNDIAGIEPGAF--DSAVFQSLNFGGTQNL---LVIFKGLKNSTIQSLW  231 (606)
T ss_dssp             ------------CHHHHHTTTTCCSEEEECTTCCCCEECTTTT--TTCEEEEEECTTCSCH---HHHHHHTTTCEEEEEE
T ss_pred             ------------ChhhhhhhcccceeEEecCCCccCccChhHh--hhccccccccCCchhH---HHHhhhccccchhhee
Confidence                        234466777888  89999999988776654  5578999999988622   2223333333333222


Q ss_pred             CCcCc----ccCChhhhhcCC--CCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEcc
Q 003893          257 KNNFQ----GHIPLEIGDILS--RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALS  330 (788)
Q Consensus       257 ~n~l~----~~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~  330 (788)
                      ...+.    ..++...+..+.  +|++|++++|.+.+..+..|+.+++|++|++++|.++ .+|..+. .+++|++|+++
T Consensus       232 ~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~-~l~~L~~L~l~  309 (606)
T 3t6q_A          232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV-GLSTLKKLVLS  309 (606)
T ss_dssp             CCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCC-SCTTCCEEECT
T ss_pred             chhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhc-ccccCCEEECc
Confidence            22111    022222222222  6777777777777666666777777777777777776 6666543 46667777777


Q ss_pred             ccccCccccccccCCCccCceeccCccCcccCC-ccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccC
Q 003893          331 NNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIP-QSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGP  409 (788)
Q Consensus       331 ~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  409 (788)
                      +|.+.+..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..                      .
T Consensus       310 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------------------~  367 (606)
T 3t6q_A          310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD----------------------C  367 (606)
T ss_dssp             TCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE----------------------E
T ss_pred             cCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc----------------------C
Confidence            776666555556666666666666665553333 23555555555555555554332                      0


Q ss_pred             chhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCc-cccC
Q 003893          410 IPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPD-RVDG  488 (788)
Q Consensus       410 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~-~~~~  488 (788)
                      .+..+..+++|++|++++|.+.+..                        ...+..+++|++|++++|++.+..+. .+..
T Consensus       368 ~~~~~~~l~~L~~L~l~~n~l~~~~------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  423 (606)
T 3t6q_A          368 CNLQLRNLSHLQSLNLSYNEPLSLK------------------------TEAFKECPQLELLDLAFTRLKVKDAQSPFQN  423 (606)
T ss_dssp             STTTTTTCTTCCEEECCSCSCEEEC------------------------TTTTTTCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred             cchhcccCCCCCEEECCCCcCCcCC------------------------HHHhcCCccCCeEECCCCcCCCcccchhhhC
Confidence            0334445555555555555443211                        11344455555555555555443332 2555


Q ss_pred             CcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccC---cccccccchhhhccCCCCCCCcccceeecCCcccC
Q 003893          489 LSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI---PSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVD  565 (788)
Q Consensus       489 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  565 (788)
                      +++|++|++++|.+.+..+..+..+++|++|++++|++.+..   +..+..++                           
T Consensus       424 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~---------------------------  476 (606)
T 3t6q_A          424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG---------------------------  476 (606)
T ss_dssp             CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT---------------------------
T ss_pred             cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCC---------------------------
Confidence            566666666666665555555666666666666666665421   12222222                           


Q ss_pred             cccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeee
Q 003893          566 PKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLD  645 (788)
Q Consensus       566 ~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  645 (788)
                                                +|++|++++|.+++..|..|..+++|+.|+|++|++++..|..|.++++| +|+
T Consensus       477 --------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~  529 (606)
T 3t6q_A          477 --------------------------RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN  529 (606)
T ss_dssp             --------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEE
T ss_pred             --------------------------CccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEE
Confidence                                      67777888888877777888888888888888888888888888888888 888


Q ss_pred             CCCcccCccCchhhhcCCCCcEEecccCcCcccCC
Q 003893          646 LSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIP  680 (788)
Q Consensus       646 Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  680 (788)
                      +++|++++..|..+..+++|+.|++++|+++|..+
T Consensus       530 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          530 LASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             CcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            88888888888888888888889999988887655

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5.5e-52  Score=473.92  Aligned_cols=514  Identities=18%  Similarity=0.199  Sum_probs=336.4

Q ss_pred             CCCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCccccCCCCCccEE
Q 003893           73 VHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIF  152 (788)
Q Consensus        73 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L  152 (788)
                      ++|++|++++|++++..+..|+++++|++|++++|.+.+..+. .|.++++|++|++++|.+++..+ ..++++++|++|
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~-~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L  109 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK-AWHGLHHLSNLILTGNPIQSFSP-GSFSGLTSLENL  109 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCCCCCT-TSSTTCTTCCEE
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHH-HhhchhhcCEeECCCCcccccCh-hhcCCcccCCEE
Confidence            4555555555555555555555555555555555555533232 45555555555555555543222 345555555555


Q ss_pred             EccCCccchhhhccccCCCCcccccEEEccCCCcCCccCCccccCCCCCcEEEecCCCCCc-cCchHHhhcCCCCCEEEc
Q 003893          153 DAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNE-EFPNWLLENNTKLRQLSL  231 (788)
Q Consensus       153 ~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l  231 (788)
                      ++++|.+.+.                            .+..+..+++|++|++++|.+.+ .+|..+ +++++|++|++
T Consensus       110 ~L~~n~l~~~----------------------------~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~L  160 (606)
T 3vq2_A          110 VAVETKLASL----------------------------ESFPIGQLITLKKLNVAHNFIHSCKLPAYF-SNLTNLVHVDL  160 (606)
T ss_dssp             ECTTSCCCCS----------------------------SSSCCTTCTTCCEEECCSSCCCCCCCCGGG-GTCTTCCEEEC
T ss_pred             EccCCccccc----------------------------cccccCCCCCCCEEeCCCCcccceechHhH-hhcCCCCEEEc
Confidence            5555544211                            11224455666666666666654 345553 68888888888


Q ss_pred             cCCcccCcCccCccCCCCcC----EEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCC-CCCCccccCCCCCCEEEccC
Q 003893          232 VNDSLVGPFRLPIHSHKQLR----LLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALD-GSIPSSFGNMNFLQFLDLSN  306 (788)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~L~----~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~  306 (788)
                      ++|.+++..+..+..+++|+    +|++++|.++ .++...+.. .+|++|++++|.+. +..+..+..++.|+.+++..
T Consensus       161 s~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~  238 (606)
T 3vq2_A          161 SYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL  238 (606)
T ss_dssp             CSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEE
T ss_pred             cCCcceecChhhhhhhhccccccceeeccCCCcc-eeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccc
Confidence            88888777666665554443    7888888876 455555543 37788888887765 34556677777777777654


Q ss_pred             CcCCC-----ccchHHhhCCC--CCcEEEc-cccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcc
Q 003893          307 NQLTG-----EIPEHLAMGCV--SLRSLAL-SNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLS  378 (788)
Q Consensus       307 n~i~~-----~~~~~~~~~l~--~L~~L~l-~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  378 (788)
                      +.+.+     .++...+.++.  .++.+++ ..+.+.+..+. +..+++|+.|++++|.+. .++ .+..+++|++|+++
T Consensus       239 ~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~  315 (606)
T 3vq2_A          239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSII  315 (606)
T ss_dssp             ECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEE
T ss_pred             cccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcc
Confidence            43321     12222222221  2334444 34444444433 555555666666655554 233 45555555555555


Q ss_pred             cCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccc--
Q 003893          379 NNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQ--  456 (788)
Q Consensus       379 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~--  456 (788)
                      +|.+ +.+| .+ .+++|++|++++|...+..  .+..+++|++|++++|.+                       .+.  
T Consensus       316 ~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l-----------------------~~~~~  367 (606)
T 3vq2_A          316 RCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNAL-----------------------SFSGC  367 (606)
T ss_dssp             SCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCE-----------------------EEEEE
T ss_pred             cccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCcc-----------------------CCCcc
Confidence            5555 2444 22 5555555555555332211  334455555555555544                       332  


Q ss_pred             cCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCc-ccccCCCCCCEEEccCCcCCccCccccc
Q 003893          457 LKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP-IQLCRLNQLQLLDLSNNNLHGHIPSCFD  535 (788)
Q Consensus       457 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~  535 (788)
                      ++. .+..+++|++|++++|.+++ .|..+..+++|+.|++++|++.+..+ ..+..+++|++|++++|.+.+..|..+.
T Consensus       368 ~~~-~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  445 (606)
T 3vq2_A          368 CSY-SDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL  445 (606)
T ss_dssp             CCH-HHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred             hhh-hhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc
Confidence            133 67788889999999998874 55778888999999999998887766 5788889999999999998887777766


Q ss_pred             ccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccc-cCccccccc
Q 003893          536 NTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIG-HIPPQIGNL  614 (788)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l  614 (788)
                      .++                                                     +|++|++++|.+++ ..|..+..+
T Consensus       446 ~l~-----------------------------------------------------~L~~L~l~~n~l~~~~~~~~~~~l  472 (606)
T 3vq2_A          446 GLT-----------------------------------------------------SLNTLKMAGNSFKDNTLSNVFANT  472 (606)
T ss_dssp             TCT-----------------------------------------------------TCCEEECTTCEEGGGEECSCCTTC
T ss_pred             CCC-----------------------------------------------------CCCEEECCCCcCCCcchHHhhccC
Confidence            655                                                     78999999999887 468888999


Q ss_pred             ccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccC-CCCcCC
Q 003893          615 TKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFA-TFNESS  693 (788)
Q Consensus       615 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~l~~~~  693 (788)
                      ++|+.|+|++|++++..|..|..+++|++|++++|++++..|..+..+++|+.|++++|+++. +|..+..++ +++.++
T Consensus       473 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~  551 (606)
T 3vq2_A          473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFN  551 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEE
T ss_pred             CCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEE
Confidence            999999999999998888889999999999999999998888999999999999999999984 555577776 589999


Q ss_pred             cCCCCCCCCCCCC
Q 003893          694 YEGNPFLCGPPLP  706 (788)
Q Consensus       694 ~~~Np~~C~~~~~  706 (788)
                      +.+|||.|+|+..
T Consensus       552 l~~N~~~c~c~~~  564 (606)
T 3vq2_A          552 LTNNSVACICEHQ  564 (606)
T ss_dssp             CCSCCCCCSSTTH
T ss_pred             ccCCCcccCCccH
Confidence            9999999999864

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-51  Score=485.14  Aligned_cols=521  Identities=18%  Similarity=0.134  Sum_probs=371.6

Q ss_pred             CCCccEEEcCCcccccCccchhHhhhcCCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcCC
Q 003893           18 FKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMT   97 (788)
Q Consensus        18 l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~   97 (788)
                      .++|++|+|++  +.+.+..+..+.. +++|++|++++|.....++  |.++.++++|++|+|++|.+.+..|..|++++
T Consensus        23 p~~l~~LdLs~--N~i~~i~~~~~~~-l~~L~~LdLs~n~~~~~i~--~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~   97 (844)
T 3j0a_A           23 LNTTERLLLSF--NYIRTVTASSFPF-LEQLQLLELGSQYTPLTID--KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF   97 (844)
T ss_dssp             CTTCCEEEEES--CCCCEECSSSCSS-CCSCSEEEECTTCCCCEEC--TTTTSSCTTCCEEECTTCCCCEECTTSSCSCS
T ss_pred             CCCcCEEECCC--CcCCccChhHCcc-cccCeEEeCCCCCCccccC--HHHhcCCCCCCEEECCCCcCcccCHhHccCCc
Confidence            47899999999  6677777778888 9999999999996654442  26799999999999999999988899999999


Q ss_pred             CCCEEeCCCCcCcCCCCh-hhhcCCCCCCEEEcCCCcccCccCccccCCCCCccEEEccCCccchhhhccccCCCCcccc
Q 003893           98 SLRILDVSSNQLIGSISS-SPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQL  176 (788)
Q Consensus        98 ~L~~L~Ls~n~l~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L  176 (788)
                      +|++|+|++|.+.+.++. ..+.++++|++|++++|.+++..+...++++++|+.|++++|.+.+.              
T Consensus        98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~--------------  163 (844)
T 3j0a_A           98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV--------------  163 (844)
T ss_dssp             SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC--------------
T ss_pred             ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee--------------
Confidence            999999999999876654 23899999999999999998655545789999999999999987543              


Q ss_pred             cEEEccCCCcCCccCCccccCC--CCCcEEEecCCCCCccCchHHhhcCCC------CCEEEccCCcccCcCccCccC--
Q 003893          177 QSLLLSSGYRDGITFPKFLYNQ--HDLEYVRLSHIKMNEEFPNWLLENNTK------LRQLSLVNDSLVGPFRLPIHS--  246 (788)
Q Consensus       177 ~~L~l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~l~~------L~~L~l~~~~~~~~~~~~~~~--  246 (788)
                                    .+..+..+  ++|+.|++++|.+.+..+..+ ..+++      |++|++++|.+.+..+..+..  
T Consensus       164 --------------~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l  228 (844)
T 3j0a_A          164 --------------CEHELEPLQGKTLSFFSLAANSLYSRVSVDW-GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI  228 (844)
T ss_dssp             --------------CSGGGHHHHHCSSCCCEECCSBSCCCCCCCC-CSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTS
T ss_pred             --------------CHHHcccccCCccceEECCCCccccccccch-hhcCCccccCceeEEecCCCcCchhHHHHHHhhc
Confidence                          22333333  689999999999988776543 34444      999999999887766555432  


Q ss_pred             -CCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCC--CCCCEEEccCCcCCCccchHHhhCCCC
Q 003893          247 -HKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNM--NFLQFLDLSNNQLTGEIPEHLAMGCVS  323 (788)
Q Consensus       247 -~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~~l~~  323 (788)
                       ...++.+.++.+.+...                +..+.+.+.....|..+  ++|+.|++++|.+. .++...+..+++
T Consensus       229 ~~~~l~~L~l~~~~~~~~----------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~  291 (844)
T 3j0a_A          229 SKSQAFSLILAHHIMGAG----------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKD  291 (844)
T ss_dssp             CSCCBSEEECCSSCCBCS----------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC-EECSCCSSSCCC
T ss_pred             Ccccccceeccccccccc----------------ccccccCCCChhhhhccccCCccEEECCCCccc-ccChhhhhcCCC
Confidence             35788888875433211                01112222222223322  45666666666555 333333344566


Q ss_pred             CcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccC
Q 003893          324 LRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK  403 (788)
Q Consensus       324 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  403 (788)
                      |++|++++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus       292 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~  371 (844)
T 3j0a_A          292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD  371 (844)
T ss_dssp             CCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEET
T ss_pred             CCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCC
Confidence            66666666666655555566666666666666666655566666666666666666666655555666666666666666


Q ss_pred             CeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCC
Q 003893          404 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP  483 (788)
Q Consensus       404 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~  483 (788)
                      |.+.+.     ..+++|+.|++++|++...                        +.    ...+++.|++++|++.+...
T Consensus       372 N~l~~i-----~~~~~L~~L~l~~N~l~~l------------------------~~----~~~~l~~L~ls~N~l~~l~~  418 (844)
T 3j0a_A          372 NALTTI-----HFIPSIPDIFLSGNKLVTL------------------------PK----INLTANLIHLSENRLENLDI  418 (844)
T ss_dssp             CCSCCC-----SSCCSCSEEEEESCCCCCC------------------------CC----CCTTCCEEECCSCCCCSSTT
T ss_pred             CCCCcc-----cCCCCcchhccCCCCcccc------------------------cc----cccccceeecccCccccCch
Confidence            666532     1266777777777766521                        11    12346667777776664322


Q ss_pred             -ccccCCcCCcEEEccCccCcccCcc-cccCCCCCCEEEccCCcCCccCc-----ccccccchhhhccCCCCCCCcccce
Q 003893          484 -DRVDGLSQLSYLILAHNNLEGEVPI-QLCRLNQLQLLDLSNNNLHGHIP-----SCFDNTTLHERYNNGSSLQPFETSF  556 (788)
Q Consensus       484 -~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  556 (788)
                       ..+..+++|+.|++++|++++..+. .+..+++|+.|++++|.+++..+     ..|..+                   
T Consensus       419 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l-------------------  479 (844)
T 3j0a_A          419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL-------------------  479 (844)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCB-------------------
T ss_pred             hhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCc-------------------
Confidence             2344677777777777777644332 34557788888888888764332     222222                   


Q ss_pred             eecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccC
Q 003893          557 VIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFS  636 (788)
Q Consensus       557 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  636 (788)
                                                        ++|+.|+|++|.+++..|..|.++++|+.|+|++|++++..+..+.
T Consensus       480 ----------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~  525 (844)
T 3j0a_A          480 ----------------------------------SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP  525 (844)
T ss_dssp             ----------------------------------CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC
T ss_pred             ----------------------------------ccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh
Confidence                                              2789999999999999999999999999999999999988777776


Q ss_pred             CCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCC
Q 003893          637 NLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIP  680 (788)
Q Consensus       637 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  680 (788)
                        ++|+.|++++|++++..|..|   .+|+.+++++|++.|..+
T Consensus       526 --~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          526 --ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE  564 (844)
T ss_dssp             --SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred             --ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence              899999999999999888765   478999999999998755

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.7e-51  Score=467.14  Aligned_cols=532  Identities=20%  Similarity=0.165  Sum_probs=427.2

Q ss_pred             cEEEcCCcccccCccchhHhhhcCCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcCCCCCE
Q 003893           22 KELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRI  101 (788)
Q Consensus        22 ~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  101 (788)
                      ++++.++  ..+ ..+|..+.   +++++|++++|.+.+..+   ..+.++++|++|++++|++++..|.+|+++++|++
T Consensus        14 ~~~~c~~--~~l-~~ip~~~~---~~l~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~   84 (606)
T 3vq2_A           14 ITYQCMD--QKL-SKVPDDIP---SSTKNIDLSFNPLKILKS---YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSN   84 (606)
T ss_dssp             TEEECTT--SCC-SSCCTTSC---TTCCEEECTTSCCCEECT---TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             CceEccC--CCc-ccCCCCCC---CCcCEEECCCCCcCEeCh---hhccCCccCcEEeCCCCcccccCHHHhhchhhcCE
Confidence            4677777  433 23444443   589999999999876655   57899999999999999999888889999999999


Q ss_pred             EeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCccccCCCCCccEEEccCCccchhhhccccCCCCcccccEEEc
Q 003893          102 LDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLL  181 (788)
Q Consensus       102 L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l  181 (788)
                      |++++|.+.+..|. .|+++++|++|++++|.+++..+ ..++++++|++|++++|.+.+                    
T Consensus        85 L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~--------------------  142 (606)
T 3vq2_A           85 LILTGNPIQSFSPG-SFSGLTSLENLVAVETKLASLES-FPIGQLITLKKLNVAHNFIHS--------------------  142 (606)
T ss_dssp             EECTTCCCCCCCTT-SSTTCTTCCEEECTTSCCCCSSS-SCCTTCTTCCEEECCSSCCCC--------------------
T ss_pred             eECCCCcccccChh-hcCCcccCCEEEccCCccccccc-cccCCCCCCCEEeCCCCcccc--------------------
Confidence            99999998865565 89999999999999999875433 468899999999999887632                    


Q ss_pred             cCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhcCCC----CCEEEccCCcccCcCccCccCCCCcCEEEccC
Q 003893          182 SSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTK----LRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSK  257 (788)
Q Consensus       182 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~----L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  257 (788)
                             ..+|..+.++++|++|++++|.+++..+..+ +.+++    +.+|++++|.+++..+..+... +|++|++++
T Consensus       143 -------~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~  213 (606)
T 3vq2_A          143 -------CKLPAYFSNLTNLVHVDLSYNYIQTITVNDL-QFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRG  213 (606)
T ss_dssp             -------CCCCGGGGTCTTCCEEECCSSCCCEECTTTT-HHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEES
T ss_pred             -------eechHhHhhcCCCCEEEccCCcceecChhhh-hhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccC
Confidence                   1356778889999999999999877655543 44444    4589999999988777666555 899999999


Q ss_pred             CcCcccCChhhhhcCCCCcEEEeeCCcCCC------CCCccccCCC--CCCEEEc-cCCcCCCccchHHhhCCCCCcEEE
Q 003893          258 NNFQGHIPLEIGDILSRLTVFNISMNALDG------SIPSSFGNMN--FLQFLDL-SNNQLTGEIPEHLAMGCVSLRSLA  328 (788)
Q Consensus       258 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~------~~~~~~~~l~--~L~~L~L-~~n~i~~~~~~~~~~~l~~L~~L~  328 (788)
                      |.+.+.........++.++.+++..+.+..      ..+..+..+.  .++.+++ ..+.+.+.+|.  +..+++|+.|+
T Consensus       214 n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~  291 (606)
T 3vq2_A          214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMS  291 (606)
T ss_dssp             CCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEE
T ss_pred             CccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEE
Confidence            988744434444458899988886554432      1222233333  3566777 66778766776  55789999999


Q ss_pred             ccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeecc
Q 003893          329 LSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEG  408 (788)
Q Consensus       329 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~  408 (788)
                      +++|.+....  .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|...+..  .+..+++|++|++++|.+.+
T Consensus       292 l~~~~~~~l~--~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~  364 (606)
T 3vq2_A          292 LAGVSIKYLE--DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSF  364 (606)
T ss_dssp             EESCCCCCCC--CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEE
T ss_pred             ecCccchhhh--hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCC
Confidence            9999997654  778899999999999999 4677 45 9999999999999655433  57789999999999999986


Q ss_pred             Cc--hhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCC-cc
Q 003893          409 PI--PLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP-DR  485 (788)
Q Consensus       409 ~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~  485 (788)
                      ..  +..+..+++|++|++++|.+.+                        ++ ..+..+++|++|++++|++.+..+ ..
T Consensus       365 ~~~~~~~~~~~~~L~~L~L~~n~l~~------------------------~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~  419 (606)
T 3vq2_A          365 SGCCSYSDLGTNSLRHLDLSFNGAII------------------------MS-ANFMGLEELQHLDFQHSTLKRVTEFSA  419 (606)
T ss_dssp             EEECCHHHHCCSCCCEEECCSCSEEE------------------------EC-CCCTTCTTCCEEECTTSEEESTTTTTT
T ss_pred             CcchhhhhccCCcccEeECCCCcccc------------------------ch-hhccCCCCCCeeECCCCccCCccChhh
Confidence            63  7888999999999999998762                        23 267778888889999888887766 57


Q ss_pred             ccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCc-cCcccccccchhhhccCCCCCCCcccceeecCCccc
Q 003893          486 VDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHG-HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDV  564 (788)
Q Consensus       486 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  564 (788)
                      +..+++|++|++++|.+++..|..+..+++|++|++++|++.+ ..|..+..++                          
T Consensus       420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~--------------------------  473 (606)
T 3vq2_A          420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT--------------------------  473 (606)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT--------------------------
T ss_pred             hhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC--------------------------
Confidence            8888999999999999888888888889999999999998886 3566665554                          


Q ss_pred             CcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCee
Q 003893          565 DPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESL  644 (788)
Q Consensus       565 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  644 (788)
                                                 +|++|++++|.+++..|..+..+++|++|+|++|++++..|..|..+++|++|
T Consensus       474 ---------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  526 (606)
T 3vq2_A          474 ---------------------------NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL  526 (606)
T ss_dssp             ---------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEE
T ss_pred             ---------------------------CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEE
Confidence                                       89999999999998889999999999999999999999889999999999999


Q ss_pred             eCCCcccCccCchhhhcCC-CCcEEecccCcCcccCCC
Q 003893          645 DLSYNKLSWKIPYQLVELN-TLAVFSVAYNNLSGKIPE  681 (788)
Q Consensus       645 ~Ls~N~l~~~~~~~l~~l~-~L~~L~l~~N~l~~~~~~  681 (788)
                      ++++|+++ .+|..+..++ +|+.|++++|++.|..+.
T Consensus       527 ~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          527 DCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             ECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             ECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            99999999 5677788887 699999999999987664

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-45  Score=417.97  Aligned_cols=493  Identities=19%  Similarity=0.246  Sum_probs=243.2

Q ss_pred             CCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCccccCCCCCccEEE
Q 003893           74 HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFD  153 (788)
Q Consensus        74 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~  153 (788)
                      ++++|++++|++++..+.+|.++++|++|++++|.+.+ ++...|.++++|++|++++|.++. ++...+.++++|++|+
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEE
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc-cCcccccCchhCCEEeCcCCcCCc-cCHhhhcCcccccccc
Confidence            45666666666655555556666666666666665553 322255566666666666665543 2223455566666666


Q ss_pred             ccCCccchhhhccccCCCCcccccEEEccCCCcCCccCCccccCCCCCcEEEecCCCCCc-cCchHHhhcCCCCCEEEcc
Q 003893          154 AENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNE-EFPNWLLENNTKLRQLSLV  232 (788)
Q Consensus       154 l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~  232 (788)
                      +++|.+....                            +..+..+++|++|++++|.+++ .+|..+ +++++|++|+++
T Consensus       107 L~~n~l~~l~----------------------------~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l~  157 (570)
T 2z63_A          107 AVETNLASLE----------------------------NFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLS  157 (570)
T ss_dssp             CTTSCCCCST----------------------------TCSCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECT
T ss_pred             ccccccccCC----------------------------CccccccccccEEecCCCccceecChhhh-cccCCCCEEeCc
Confidence            6555542210                            1123455566666666666554 345443 567777777777


Q ss_pred             CCcccCcCccCccCCCCc----CEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCC-CCCccccCCCCCCEEEccCC
Q 003893          233 NDSLVGPFRLPIHSHKQL----RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDG-SIPSSFGNMNFLQFLDLSNN  307 (788)
Q Consensus       233 ~~~~~~~~~~~~~~~~~L----~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n  307 (788)
                      +|.+++..+..+..+++|    +.+++++|.+.+..+ ..+... +|++|++++|.... ..+..+..++.++.+.+...
T Consensus       158 ~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~-~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~  235 (570)
T 2z63_A          158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP-GAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG  235 (570)
T ss_dssp             TSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECT-TTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEE
T ss_pred             CCccceecHHHccchhccchhhhhcccCCCCceecCH-HHhccC-cceeEecccccccccchhhhhcCccccceeeeccc
Confidence            777766655555555555    566666666653333 223222 56666666653221 12333444555544443322


Q ss_pred             cCCC-----ccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCc-cCcccCCccCCCCCCCcEEEcccCc
Q 003893          308 QLTG-----EIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGN-HFVGEIPQSLSKCSSLQGLFLSNNS  381 (788)
Q Consensus       308 ~i~~-----~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n~  381 (788)
                      .+..     .++...+.+++++                      .++.++++++ .+.+..+..+..+++|++|++++|.
T Consensus       236 ~~~~~~~l~~~~~~~~~~l~~l----------------------~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  293 (570)
T 2z63_A          236 EFRNEGNLEKFDKSALEGLCNL----------------------TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT  293 (570)
T ss_dssp             ECCCCSSCEECCTTTTGGGGGS----------------------EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE
T ss_pred             cccCchhhhhcchhhhcccccc----------------------chhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc
Confidence            1110     1111111111111                      1233333333 3333344444444444444444444


Q ss_pred             CCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccC-cc
Q 003893          382 LSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLK-EG  460 (788)
Q Consensus       382 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~  460 (788)
                      +. .+|..+..+ +|++|++++|.+. ..|.  ..+++|+.|++++|.+.+..+. ..+++|++|++++|.+.+... ..
T Consensus       294 l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~  367 (570)
T 2z63_A          294 IE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQ  367 (570)
T ss_dssp             EC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEH
T ss_pred             ch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccc
Confidence            44 234444444 4444444444444 2221  2344455555554444322221 223333333333333322110 11


Q ss_pred             cccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCc-ccccCCCCCCEEEccCCcCCccCcccccccch
Q 003893          461 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP-IQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTL  539 (788)
Q Consensus       461 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  539 (788)
                      .+.++++|++|++++|.+.+..+ .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..++ 
T Consensus       368 ~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-  445 (570)
T 2z63_A          368 SDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-  445 (570)
T ss_dssp             HHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT-
T ss_pred             cccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCC-
Confidence            34555566666666665553322 25555566666666665554433 3455555566666665555555444443333 


Q ss_pred             hhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCccc-ccCcccccccccCC
Q 003893          540 HERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLI-GHIPPQIGNLTKIQ  618 (788)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~  618 (788)
                                                                          +|++|++++|.++ +.+|..+..+++|+
T Consensus       446 ----------------------------------------------------~L~~L~l~~n~l~~~~~p~~~~~l~~L~  473 (570)
T 2z63_A          446 ----------------------------------------------------SLEVLKMAGNSFQENFLPDIFTELRNLT  473 (570)
T ss_dssp             ----------------------------------------------------TCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             ----------------------------------------------------cCcEEECcCCcCccccchhhhhcccCCC
Confidence                                                                5555555555554 34455555555566


Q ss_pred             eEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCC
Q 003893          619 TLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE  681 (788)
Q Consensus       619 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  681 (788)
                      .|++++|++++..|..|..+++|++|++++|++++..|..+..+++|+.|++++|+++|.+|.
T Consensus       474 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             EEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            666666555555555555555566666665555555555555555555555555555555443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-45  Score=416.41  Aligned_cols=466  Identities=21%  Similarity=0.192  Sum_probs=351.5

Q ss_pred             cccEEEccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCcCEEE
Q 003893          175 QLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLD  254 (788)
Q Consensus       175 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  254 (788)
                      +++.|++ .++...+..+..+..+++|++|++++|.+++..+.. ++++++|++|++++|.+++..+..+..+++|++|+
T Consensus        29 ~l~~L~L-s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           29 STKNLDL-SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SCCEEEC-CSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             cccEEEc-cCCccCccChhHhhCCCCceEEECCCCcCCccCccc-ccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence            6788888 666666666667788888888888888876544443 46788888888888888777777788888888888


Q ss_pred             ccCCcCcccCChhhhhcCCCCcEEEeeCCcCCC-CCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCC----cEEEc
Q 003893          255 VSKNNFQGHIPLEIGDILSRLTVFNISMNALDG-SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSL----RSLAL  329 (788)
Q Consensus       255 l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L----~~L~l  329 (788)
                      +++|.++ .++...+..+++|++|++++|.+.+ .+|..++++++|++|++++|.++ .++...+..+++|    ++|++
T Consensus       107 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~~~~~L~l  184 (570)
T 2z63_A          107 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDL  184 (570)
T ss_dssp             CTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCTTCCCEEEC
T ss_pred             ccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc-eecHHHccchhccchhhhhccc
Confidence            8888877 4444323347788888888888775 35777888888888888888887 4443333446666    78888


Q ss_pred             cccccCccccccccCCCccCceeccCccCcc-cCCccCCCCC--------------------------------CCcEEE
Q 003893          330 SNNNLEGHMFSRNFNLTNLIWLQLEGNHFVG-EIPQSLSKCS--------------------------------SLQGLF  376 (788)
Q Consensus       330 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~--------------------------------~L~~L~  376 (788)
                      ++|.+.+..+..+... +|++|++++|.... ..+..+..++                                .++.++
T Consensus       185 ~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~  263 (570)
T 2z63_A          185 SLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR  263 (570)
T ss_dssp             TTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred             CCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence            8888887776666544 78888887763221 0111111111                                134445


Q ss_pred             cccC-cCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCccccc
Q 003893          377 LSNN-SLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHG  455 (788)
Q Consensus       377 l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~  455 (788)
                      ++++ .+.+..+..+..+++|++|++++|.+. .+|..+..+ +|+.|++++|.+. .++. ..+++|+.|++++|.+.+
T Consensus       264 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~~  339 (570)
T 2z63_A          264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGN  339 (570)
T ss_dssp             EEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSCC
T ss_pred             hhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc-ccccccCEEeCcCCcccc
Confidence            5554 455566677777888888888888877 456666666 8888888888776 3333 357788888888887765


Q ss_pred             ccCcccccccccccEEeCCCCccCCCC--CccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCc-c
Q 003893          456 QLKEGTFFNCLTLMILDLSYNHLNGNI--PDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIP-S  532 (788)
Q Consensus       456 ~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~  532 (788)
                      ..+.   ..+++|++|++++|.+++..  +..+.++++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ .
T Consensus       340 ~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~  415 (570)
T 2z63_A          340 AFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFS  415 (570)
T ss_dssp             BCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSC
T ss_pred             cccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchh
Confidence            4433   56778888888888877443  55677788888888888887754443 7788888888888888776554 2


Q ss_pred             cccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCccccc
Q 003893          533 CFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIG  612 (788)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  612 (788)
                      .+..++                                                     +|++|++++|.+.+..|..+.
T Consensus       416 ~~~~l~-----------------------------------------------------~L~~L~l~~n~l~~~~~~~~~  442 (570)
T 2z63_A          416 VFLSLR-----------------------------------------------------NLIYLDISHTHTRVAFNGIFN  442 (570)
T ss_dssp             TTTTCT-----------------------------------------------------TCCEEECTTSCCEECCTTTTT
T ss_pred             hhhcCC-----------------------------------------------------CCCEEeCcCCcccccchhhhh
Confidence            333333                                                     899999999999999999999


Q ss_pred             ccccCCeEeCCCCCCC-CCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCc
Q 003893          613 NLTKIQTLNLSHNNLA-GPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNE  691 (788)
Q Consensus       613 ~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~  691 (788)
                      ++++|++|++++|+++ +.+|..|..+++|++|++++|++++..|..+..+++|+.|++++|++++.+|..+..+++++.
T Consensus       443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  522 (570)
T 2z63_A          443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK  522 (570)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcE
Confidence            9999999999999997 568899999999999999999999988999999999999999999999998888899999999


Q ss_pred             CCcCCCCCCCCCCCC
Q 003893          692 SSYEGNPFLCGPPLP  706 (788)
Q Consensus       692 ~~~~~Np~~C~~~~~  706 (788)
                      +++.+||+.|+|+..
T Consensus       523 L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          523 IWLHTNPWDCSCPRI  537 (570)
T ss_dssp             EECCSSCBCCCTTTT
T ss_pred             EEecCCcccCCCcch
Confidence            999999999999754

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.3e-45  Score=412.85  Aligned_cols=487  Identities=20%  Similarity=0.180  Sum_probs=243.7

Q ss_pred             CCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCCCC
Q 003893           45 MPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSI  124 (788)
Q Consensus        45 l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L  124 (788)
                      |+...+.+.+++.++.    +|..+.  ++|++|++++|++++..|..|+++++|++|++++|.+.+..+. .+..+++|
T Consensus         4 C~~~~~c~~~~~~l~~----ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L   76 (549)
T 2z81_A            4 CDASGVCDGRSRSFTS----IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD-AFYSLGSL   76 (549)
T ss_dssp             ECTTSEEECTTSCCSS----CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT-TTTTCTTC
T ss_pred             CCCCceEECCCCcccc----ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh-hccccccC
Confidence            3444556666666542    223332  5677777777777766666777777777777777776643333 56666677


Q ss_pred             CEEEcCCCcccCccCccccCCCCCccEEEccCCccchhhhccccCCCCcccccEEEccCCCcCCccCCccccCCCCCcEE
Q 003893          125 EDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYV  204 (788)
Q Consensus       125 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  204 (788)
                      ++|++++|.+++. +...++++++|++|++++|.                                              
T Consensus        77 ~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~----------------------------------------------  109 (549)
T 2z81_A           77 EHLDLSDNHLSSL-SSSWFGPLSSLKYLNLMGNP----------------------------------------------  109 (549)
T ss_dssp             CEEECTTSCCCSC-CHHHHTTCTTCCEEECTTCC----------------------------------------------
T ss_pred             CEEECCCCccCcc-CHHHhccCCCCcEEECCCCc----------------------------------------------
Confidence            7777766665532 21223344444444443333                                              


Q ss_pred             EecCCCCCccCchHHhhcCCCCCEEEccCCcccCc-CccCccCCCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCC
Q 003893          205 RLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGP-FRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMN  283 (788)
Q Consensus       205 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n  283 (788)
                                                     +++. .+..+..+++|++|++++|.+.+.+|...+..+++|++|++++|
T Consensus       110 -------------------------------l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n  158 (549)
T 2z81_A          110 -------------------------------YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL  158 (549)
T ss_dssp             -------------------------------CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             -------------------------------ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence                                           3221 12233344444444444444222333322233555666666666


Q ss_pred             cCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccc---cccccCCCccCceeccCccCcc
Q 003893          284 ALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHM---FSRNFNLTNLIWLQLEGNHFVG  360 (788)
Q Consensus       284 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~---~~~~~~l~~L~~L~l~~n~~~~  360 (788)
                      .+.+..|..+..+++|++|+++.|.+. .+|..++..+++|++|++++|.+.+..   ......+++|+.|++++|.+.+
T Consensus       159 ~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  237 (549)
T 2z81_A          159 SLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD  237 (549)
T ss_dssp             TCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH
T ss_pred             cccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccch
Confidence            665555556666666666666666655 555555555666666666666655432   1112234556666666665543


Q ss_pred             cCC----ccCCCCCCCcEEEcccCcCCCCC------CccccCCCCccEEEccCCeeccC-----chhhhhcccCCcEEec
Q 003893          361 EIP----QSLSKCSSLQGLFLSNNSLSGKI------PRWLGNLTVLRHIIMPKNHIEGP-----IPLEFCQLRILQILDI  425 (788)
Q Consensus       361 ~~~----~~~~~l~~L~~L~l~~n~l~~~~------~~~l~~l~~L~~L~l~~n~~~~~-----~~~~~~~l~~L~~L~l  425 (788)
                      ..+    ..+..+++|+.+++++|.+.+..      ...+..+++++.|.+.++.+...     .+..+...++|+.|++
T Consensus       238 ~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l  317 (549)
T 2z81_A          238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV  317 (549)
T ss_dssp             HHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEE
T ss_pred             hHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEe
Confidence            221    22344555666666665543211      11233445555555555544321     1111223345555555


Q ss_pred             cCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCC---ccccCCcCCcEEEccCccC
Q 003893          426 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP---DRVDGLSQLSYLILAHNNL  502 (788)
Q Consensus       426 ~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~L~~n~l  502 (788)
                      ++|.+.                        .+|...+.++++|++|++++|++++..|   ..+..+++|++|++++|++
T Consensus       318 ~~n~l~------------------------~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l  373 (549)
T 2z81_A          318 ENSKVF------------------------LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL  373 (549)
T ss_dssp             ESSCCC------------------------CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCC
T ss_pred             ccCccc------------------------cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcc
Confidence            555543                        2333223344555555555555543322   1234445555555555555


Q ss_pred             cccCc--ccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecC
Q 003893          503 EGEVP--IQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKS  580 (788)
Q Consensus       503 ~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~  580 (788)
                      ++..+  ..+..+++|++|++++|++++ +|..+...                                           
T Consensus       374 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~-------------------------------------------  409 (549)
T 2z81_A          374 RSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWP-------------------------------------------  409 (549)
T ss_dssp             CCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCC-------------------------------------------
T ss_pred             cccccchhhhhcCCCCCEEECCCCCCcc-CChhhccc-------------------------------------------
Confidence            43221  234455555555555555542 22222111                                           


Q ss_pred             ceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhh
Q 003893          581 ITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLV  660 (788)
Q Consensus       581 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~  660 (788)
                                ++|++|++++|++++. |..+  .++|+.|+|++|++++..    ..+++|++|++++|+++ .+|. ..
T Consensus       410 ----------~~L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~  470 (549)
T 2z81_A          410 ----------EKMRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-AS  470 (549)
T ss_dssp             ----------TTCCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GG
T ss_pred             ----------ccccEEECCCCCcccc-cchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cc
Confidence                      1455555555555422 2211  135555555555555432    34555566666666555 3343 23


Q ss_pred             cCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCCCCC
Q 003893          661 ELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPP  704 (788)
Q Consensus       661 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~  704 (788)
                      .+++|++|++++|++++.+|..+..+++++.+++++|||.|+|+
T Consensus       471 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          471 LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             cCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            45556666666666665555555555556666666666666654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.3e-44  Score=408.14  Aligned_cols=495  Identities=19%  Similarity=0.142  Sum_probs=349.2

Q ss_pred             ccEEEcCCcccccCccchhHhhhcCCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcCCCCC
Q 003893           21 LKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLR  100 (788)
Q Consensus        21 L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~  100 (788)
                      ..+.+.++  ..+. .+|..+   .++|++|++++|.+++..+   .++.++++|++|++++|++++..|..|+++++|+
T Consensus         7 ~~~c~~~~--~~l~-~ip~~~---~~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   77 (549)
T 2z81_A            7 SGVCDGRS--RSFT-SIPSGL---TAAMKSLDLSFNKITYIGH---GDLRACANLQVLILKSSRINTIEGDAFYSLGSLE   77 (549)
T ss_dssp             TSEEECTT--SCCS-SCCSCC---CTTCCEEECCSSCCCEECS---STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CceEECCC--Cccc-cccccC---CCCccEEECcCCccCccCh---hhhhcCCcccEEECCCCCcCccChhhccccccCC
Confidence            33456665  3332 344433   3589999999999876655   6799999999999999999988889999999999


Q ss_pred             EEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCccccCCCCCccEEEccCCccchhhhccccCCCCcccccEEE
Q 003893          101 ILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLL  180 (788)
Q Consensus       101 ~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~  180 (788)
                      +|++++|.+.+ ++...++++++|++|++++|.+++......+.++++|++|++++|.+                     
T Consensus        78 ~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~---------------------  135 (549)
T 2z81_A           78 HLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET---------------------  135 (549)
T ss_dssp             EEECTTSCCCS-CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS---------------------
T ss_pred             EEECCCCccCc-cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcc---------------------
Confidence            99999999985 45537999999999999999987422223566666777666666542                     


Q ss_pred             ccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCcCEEEccCCcC
Q 003893          181 LSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNF  260 (788)
Q Consensus       181 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  260 (788)
                                                     .+.++...+.++++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus       136 -------------------------------~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  184 (549)
T 2z81_A          136 -------------------------------FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES  184 (549)
T ss_dssp             -------------------------------CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred             -------------------------------ccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence                                           1222222234556666666666666665566666777788888888777


Q ss_pred             cccCChhhhhcCCCCcEEEeeCCcCCCCC--C-ccccCCCCCCEEEccCCcCCCccchHHh---hCCCCCcEEEcccccc
Q 003893          261 QGHIPLEIGDILSRLTVFNISMNALDGSI--P-SSFGNMNFLQFLDLSNNQLTGEIPEHLA---MGCVSLRSLALSNNNL  334 (788)
Q Consensus       261 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~---~~l~~L~~L~l~~n~i  334 (788)
                      . .+|..+...+++|++|++++|.+.+..  + .....+++|+.|++++|.+++..+..+.   ..+++|+.+++++|.+
T Consensus       185 ~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~  263 (549)
T 2z81_A          185 A-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL  263 (549)
T ss_dssp             T-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred             c-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence            5 566666666788999999998887532  1 2234578888999988887754444332   2456777777777766


Q ss_pred             CccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCC-----CCccccCCCCccEEEccCCeeccC
Q 003893          335 EGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGK-----IPRWLGNLTVLRHIIMPKNHIEGP  409 (788)
Q Consensus       335 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~l~~l~~L~~L~l~~n~~~~~  409 (788)
                      .+....     +   .          .....+..+++|+.|++.++.+...     .+..+...++|+.|++++|.+...
T Consensus       264 ~~~~~~-----~---~----------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~i  325 (549)
T 2z81_A          264 NGLGDF-----N---P----------SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV  325 (549)
T ss_dssp             ECCSCC-----C---C----------CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCC
T ss_pred             cccccc-----c---c----------cchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccC
Confidence            542110     0   0          0112234455666666666654421     111123356788888888888743


Q ss_pred             chhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCC--cccc
Q 003893          410 IPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP--DRVD  487 (788)
Q Consensus       410 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~~  487 (788)
                      ....+..+++|++|++++|++.+..+..                     ...+..+++|++|++++|++++..+  ..+.
T Consensus       326 p~~~~~~l~~L~~L~Ls~N~l~~~~~~~---------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  384 (549)
T 2z81_A          326 PCSFSQHLKSLEFLDLSENLMVEEYLKN---------------------SACKGAWPSLQTLVLSQNHLRSMQKTGEILL  384 (549)
T ss_dssp             CHHHHHHCTTCCEEECCSSCCCHHHHHH---------------------HTCTTSSTTCCEEECTTSCCCCHHHHHHHGG
T ss_pred             CHHHHhcCccccEEEccCCccccccccc---------------------hhhhhccccCcEEEccCCcccccccchhhhh
Confidence            3333467888999999888876322100                     1135567778888888888775432  4577


Q ss_pred             CCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcc
Q 003893          488 GLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPK  567 (788)
Q Consensus       488 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  567 (788)
                      .+++|++|++++|+++ .+|..+..+++|++|++++|++++...                                    
T Consensus       385 ~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~------------------------------------  427 (549)
T 2z81_A          385 TLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKT------------------------------------  427 (549)
T ss_dssp             GCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCT------------------------------------
T ss_pred             cCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccc------------------------------------
Confidence            7888888888888887 567777888888888888888764321                                    


Q ss_pred             cccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCC
Q 003893          568 KQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLS  647 (788)
Q Consensus       568 ~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  647 (788)
                                          .+|++|++|++++|++++..    ..+++|++|+|++|+++ .+|. ...+++|++|+++
T Consensus       428 --------------------~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls  481 (549)
T 2z81_A          428 --------------------CIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKIS  481 (549)
T ss_dssp             --------------------TSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECC
T ss_pred             --------------------hhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecC
Confidence                                12347899999999988643    57889999999999998 4554 4678999999999


Q ss_pred             CcccCccCchhhhcCCCCcEEecccCcCcccCC
Q 003893          648 YNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIP  680 (788)
Q Consensus       648 ~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  680 (788)
                      +|++++..|..+..+++|+.|++++|+++|..|
T Consensus       482 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          482 RNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             SSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            999998888889999999999999999998766

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.4e-43  Score=407.94  Aligned_cols=542  Identities=20%  Similarity=0.203  Sum_probs=341.3

Q ss_pred             CCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCcccCccCccccCCCCCccEEE
Q 003893           74 HLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFD  153 (788)
Q Consensus        74 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~  153 (788)
                      ++++|+|++|+|++..+.+|.++++|++|||++|.|. .++.++|.++++|++|+|++|++++ ++...|.++++|++|+
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCE-ECGGGGTTCTTCCEEE
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCC-CCHHHhcCCCCCCEEE
Confidence            5677777777776655666777777777777777666 3444366667777777777776653 3434566666666666


Q ss_pred             ccCCccchhhhccccCCCCcccccEEEccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccC
Q 003893          154 AENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVN  233 (788)
Q Consensus       154 l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  233 (788)
                      +++|++.+.                            .+..++.+++|++|++++|.+++......++.+++|++|++++
T Consensus       131 Ls~N~l~~l----------------------------~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~  182 (635)
T 4g8a_A          131 AVETNLASL----------------------------ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS  182 (635)
T ss_dssp             CTTSCCCCS----------------------------TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred             CCCCcCCCC----------------------------ChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC
Confidence            666654321                            1123445556666666666654432222235667777777777


Q ss_pred             CcccCcCccCccCCCC----cCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcC
Q 003893          234 DSLVGPFRLPIHSHKQ----LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQL  309 (788)
Q Consensus       234 ~~~~~~~~~~~~~~~~----L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i  309 (788)
                      |.+++..+..+..+..    ...++++.|.+. .++...+. ...++.+++.+|.                        .
T Consensus       183 N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~~-~~~~~~l~l~~n~------------------------~  236 (635)
T 4g8a_A          183 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK-EIRLHKLTLRNNF------------------------D  236 (635)
T ss_dssp             SCCCEECGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTTT-TCEEEEEEEESCC------------------------S
T ss_pred             ccccccccccccchhhhhhhhhhhhcccCccc-ccCccccc-chhhhhhhhhccc------------------------c
Confidence            7666555444433222    224555555554 23332222 1234444444443                        3


Q ss_pred             CCccchHHhhCCCCCcEEEcccccc------CccccccccCCCccCceeccCccCc---ccCCccCCCCCCCcEEEcccC
Q 003893          310 TGEIPEHLAMGCVSLRSLALSNNNL------EGHMFSRNFNLTNLIWLQLEGNHFV---GEIPQSLSKCSSLQGLFLSNN  380 (788)
Q Consensus       310 ~~~~~~~~~~~l~~L~~L~l~~n~i------~~~~~~~~~~l~~L~~L~l~~n~~~---~~~~~~~~~l~~L~~L~l~~n  380 (788)
                      ...++...+.++..++...+..+..      .......+.....+....+..+...   ......+....+++.+.+.++
T Consensus       237 ~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~  316 (635)
T 4g8a_A          237 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSV  316 (635)
T ss_dssp             SHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESC
T ss_pred             cccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccc
Confidence            2223333333344444333322211      1111122222233333333222211   112223444555666666655


Q ss_pred             cCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCccccccc-Cc
Q 003893          381 SLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQL-KE  459 (788)
Q Consensus       381 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~  459 (788)
                      .+...  ..+.....++.|++.+|.+....+   ..++.|+.+++..|.... ......+++|+.++++.|.+.... ..
T Consensus       317 ~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~~~  390 (635)
T 4g8a_A          317 TIERV--KDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCS  390 (635)
T ss_dssp             EEEEC--GGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCC-BCCCCBCTTCCEEECCSSCCBEEEECC
T ss_pred             ccccc--cccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCC-Ccccccccccccchhhccccccccccc
Confidence            54422  123444556666666666553332   234556666666665542 223334666666666666553211 11


Q ss_pred             ccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccC-cccccCCCCCCEEEccCCcCCccCcccccccc
Q 003893          460 GTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEV-PIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTT  538 (788)
Q Consensus       460 ~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  538 (788)
                      ..+..+.+|+++++..+.+.. .+..+..+++|+.+++.++...... +..+..+++++.+++++|.+.+..+..+....
T Consensus       391 ~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~  469 (635)
T 4g8a_A          391 QSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS  469 (635)
T ss_dssp             HHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred             cchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccch
Confidence            255667889999999998764 4556778899999999988765443 45678899999999999999887776665544


Q ss_pred             hhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCccc-ccCcccccccccC
Q 003893          539 LHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLI-GHIPPQIGNLTKI  617 (788)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L  617 (788)
                                                                           .++.|++++|.+. +..|..|..+++|
T Consensus       470 -----------------------------------------------------~L~~L~Ls~N~~~~~~~~~~~~~l~~L  496 (635)
T 4g8a_A          470 -----------------------------------------------------SLEVLKMAGNSFQENFLPDIFTELRNL  496 (635)
T ss_dssp             -----------------------------------------------------TCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             -----------------------------------------------------hhhhhhhhhcccccccCchhhhhcccc
Confidence                                                                 8999999999754 4678889999999


Q ss_pred             CeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCcccc-CCCCcCCcCC
Q 003893          618 QTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQF-ATFNESSYEG  696 (788)
Q Consensus       618 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~-~~l~~~~~~~  696 (788)
                      ++|+|++|++++..|..|.++++|++|+|++|+|++..|..|..+++|++|++++|++++..|..+..+ ++++.+++++
T Consensus       497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~  576 (635)
T 4g8a_A          497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ  576 (635)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred             CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence            999999999999999999999999999999999999889999999999999999999999999988887 6899999999


Q ss_pred             CCCCCCCCCCCC-----------CCCCCCCCCCCCCCCCCCccchh
Q 003893          697 NPFLCGPPLPIC-----------ISPTTMPEASPSNEGDNNLIDMD  731 (788)
Q Consensus       697 Np~~C~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~  731 (788)
                      |||.|+|+..+.           ..+....|++|...++..+.+++
T Consensus       577 Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g~~l~~~~  622 (635)
T 4g8a_A          577 NDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLN  622 (635)
T ss_dssp             CCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTTCBGGGCC
T ss_pred             CCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHHCCCEeeeec
Confidence            999999985321           12334567778778877766654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=6.9e-45  Score=414.03  Aligned_cols=240  Identities=18%  Similarity=0.208  Sum_probs=156.7

Q ss_pred             CcCCccCCccccCCCCCcEEEecCCCCCcc-----------------CchHHhh--cCCCCCEEEccCCcccCcCccCcc
Q 003893          185 YRDGITFPKFLYNQHDLEYVRLSHIKMNEE-----------------FPNWLLE--NNTKLRQLSLVNDSLVGPFRLPIH  245 (788)
Q Consensus       185 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~  245 (788)
                      +.+.+ +|..+.++++|++|++++|.+++.                 +|..+ +  ++++|++|++++|.+.+..+..+.
T Consensus       193 n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~  270 (636)
T 4eco_A          193 NNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLK  270 (636)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred             CCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHh
Confidence            34455 777788888888888888888774                 56554 4  677777777777777777777777


Q ss_pred             CCCCcCEEEccCCc-Ccc-cCChhhhhc-----CCCCcEEEeeCCcCCCCCCc--cccCCCCCCEEEccCCcCCCccchH
Q 003893          246 SHKQLRLLDVSKNN-FQG-HIPLEIGDI-----LSRLTVFNISMNALDGSIPS--SFGNMNFLQFLDLSNNQLTGEIPEH  316 (788)
Q Consensus       246 ~~~~L~~L~l~~n~-l~~-~~~~~~~~~-----~~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~~~~~  316 (788)
                      .+++|++|++++|. +++ .+|..+...     +++|++|++++|.++ .+|.  .++.+++|++|++++|.+++.+|  
T Consensus       271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--  347 (636)
T 4eco_A          271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--  347 (636)
T ss_dssp             TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--
T ss_pred             cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--
Confidence            77777777777776 766 566666542     267777777777776 5666  67777777777777777766666  


Q ss_pred             HhhCCCCCcEEEccccccCccccccccCCCc-cCceeccCccCcccCCccCCCCC--CCcEEEcccCcCCCCCCcccc--
Q 003893          317 LAMGCVSLRSLALSNNNLEGHMFSRNFNLTN-LIWLQLEGNHFVGEIPQSLSKCS--SLQGLFLSNNSLSGKIPRWLG--  391 (788)
Q Consensus       317 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~l~--  391 (788)
                      .+..+++|++|++++|.++ ..+..+..+++ |++|++++|.+. .+|..+...+  +|++|++++|.+.+..|..+.  
T Consensus       348 ~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~  425 (636)
T 4eco_A          348 AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL  425 (636)
T ss_dssp             CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred             hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence            3334666777777777666 34445666666 666666666666 5555555443  666666666666666665555  


Q ss_pred             -----CCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCC
Q 003893          392 -----NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS  431 (788)
Q Consensus       392 -----~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  431 (788)
                           .+++|++|++++|.+....+..+..+++|++|++++|+++
T Consensus       426 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred             ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence                 4555666666666555433334444555555555555554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.6e-42  Score=397.33  Aligned_cols=515  Identities=19%  Similarity=0.175  Sum_probs=365.3

Q ss_pred             CCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCCCCCE
Q 003893           47 SIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIED  126 (788)
Q Consensus        47 ~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~  126 (788)
                      ++++|||++|.|+...+   .+|.++++|++|+|++|+++++.+.+|.++++|++|+|++|++. .+|...|.++++|++
T Consensus        53 ~~~~LdLs~N~i~~l~~---~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~  128 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGS---YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQK  128 (635)
T ss_dssp             TCCEEECTTSCCCEECT---TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCE
T ss_pred             CCCEEEeeCCCCCCCCH---HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCE
Confidence            79999999999876655   67999999999999999999888888999999999999999988 566557899999999


Q ss_pred             EEcCCCcccCccCccccCCCCCccEEEccCCccchhhhccccCCCCcccccEEEccCCCcCCccCCccccCCCCCcEEEe
Q 003893          127 LILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRL  206 (788)
Q Consensus       127 L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l  206 (788)
                      |++++|.+++ ++...++++++|++|++++|.+...                           ..|..+..+++|++|++
T Consensus       129 L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~---------------------------~~~~~~~~l~~L~~L~L  180 (635)
T 4g8a_A          129 LVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSF---------------------------KLPEYFSNLTNLEHLDL  180 (635)
T ss_dssp             EECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCC---------------------------CCCGGGGGCTTCCEEEC
T ss_pred             EECCCCcCCC-CChhhhhcCcccCeeccccCccccC---------------------------CCchhhccchhhhhhcc
Confidence            9999999875 4445788999999999999876421                           24566778889999999


Q ss_pred             cCCCCCccCchHHhhcCC----CCCEEEccCCcccCcCccCccCCCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeC
Q 003893          207 SHIKMNEEFPNWLLENNT----KLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISM  282 (788)
Q Consensus       207 ~~~~~~~~~~~~~~~~l~----~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~  282 (788)
                      ++|.+++..+..+ +.+.    ....++++.|.+....+..+. ...++.+++.+|.....++...+..++.++...+..
T Consensus       181 ~~N~l~~~~~~~l-~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~  258 (635)
T 4g8a_A          181 SSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL  258 (635)
T ss_dssp             CSSCCCEECGGGG-HHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEE
T ss_pred             cCccccccccccc-cchhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccc
Confidence            9999877665543 3333    345788888888766554443 345678888888665444445555567777766654


Q ss_pred             CcC------CCCCCccccCCCCCCEEEccCCcCCCccc--hHHhhCCCCCcEEEccccccCccccccccCCCccCceecc
Q 003893          283 NAL------DGSIPSSFGNMNFLQFLDLSNNQLTGEIP--EHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLE  354 (788)
Q Consensus       283 n~l------~~~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~  354 (788)
                      +..      .......+.....+...++..+.......  ...+..+.+++.+.+.++.+....  .+.....|+.|++.
T Consensus       259 ~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~  336 (635)
T 4g8a_A          259 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELV  336 (635)
T ss_dssp             ECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEE
T ss_pred             cccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcc
Confidence            332      22233345555666666665443321111  112234567888888877765433  34456778888888


Q ss_pred             CccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeecc--CchhhhhcccCCcEEeccCCcCCC
Q 003893          355 GNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEG--PIPLEFCQLRILQILDISDNNISG  432 (788)
Q Consensus       355 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~  432 (788)
                      +|.+....+   ..++.|+.+++..|.....  .....+++|+.++++.|.+..  ..+..+..+.+|+.+++..+....
T Consensus       337 ~~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~  411 (635)
T 4g8a_A          337 NCKFGQFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT  411 (635)
T ss_dssp             SCEESSCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE
T ss_pred             cccccCcCc---ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc
Confidence            887764433   2456777888887776532  233467788888888777643  334455667777777777776543


Q ss_pred             CCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCC-ccccCCcCCcEEEccCccCcccCccccc
Q 003893          433 SLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP-DRVDGLSQLSYLILAHNNLEGEVPIQLC  511 (788)
Q Consensus       433 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~  511 (788)
                      ..+                         .+..+++|+.++++++......+ ..+..+++++.++++.|.+....+..+.
T Consensus       412 ~~~-------------------------~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~  466 (635)
T 4g8a_A          412 MSS-------------------------NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN  466 (635)
T ss_dssp             ECS-------------------------CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred             ccc-------------------------cccccccccchhhhhccccccccccccccccccccccccccccccccccccc
Confidence            222                         35556666777776665543332 3456667777777777777766666777


Q ss_pred             CCCCCCEEEccCCcCC-ccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCcc
Q 003893          512 RLNQLQLLDLSNNNLH-GHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVP  590 (788)
Q Consensus       512 ~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  590 (788)
                      .+++|+.|++++|.+. +..|..|..++                                                    
T Consensus       467 ~~~~L~~L~Ls~N~~~~~~~~~~~~~l~----------------------------------------------------  494 (635)
T 4g8a_A          467 GLSSLEVLKMAGNSFQENFLPDIFTELR----------------------------------------------------  494 (635)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCT----------------------------------------------------
T ss_pred             cchhhhhhhhhhcccccccCchhhhhcc----------------------------------------------------
Confidence            7777777777777643 33454554443                                                    


Q ss_pred             CCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcC-CCCcEEe
Q 003893          591 SLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVEL-NTLAVFS  669 (788)
Q Consensus       591 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l-~~L~~L~  669 (788)
                       +|++|+|++|++++..|..|.++++|++|+|++|+|++..|..|.++++|++|||++|+|++..|..+..+ ++|+.|+
T Consensus       495 -~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~  573 (635)
T 4g8a_A          495 -NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN  573 (635)
T ss_dssp             -TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEE
T ss_pred             -ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEE
Confidence             67888888888888888888888899999999999988888888888999999999999988888888887 6799999


Q ss_pred             cccCcCcccCC
Q 003893          670 VAYNNLSGKIP  680 (788)
Q Consensus       670 l~~N~l~~~~~  680 (788)
                      +++|+++|...
T Consensus       574 L~~Np~~C~C~  584 (635)
T 4g8a_A          574 LTQNDFACTCE  584 (635)
T ss_dssp             CTTCCBCCSGG
T ss_pred             eeCCCCcccCC
Confidence            99999987643

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.5e-43  Score=394.38  Aligned_cols=459  Identities=19%  Similarity=0.160  Sum_probs=278.0

Q ss_pred             CEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCCCCCEEE
Q 003893           49 QYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLI  128 (788)
Q Consensus        49 ~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~  128 (788)
                      ++|++++|.++.. |   ..+.  ++|++|++++|.+++..|..|.++++|++|++++|.+.+..|. .+.++++|++|+
T Consensus         3 ~~l~ls~n~l~~i-p---~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~   75 (520)
T 2z7x_B            3 FLVDRSKNGLIHV-P---KDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLD   75 (520)
T ss_dssp             CEEECTTSCCSSC-C---CSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEE
T ss_pred             ceEecCCCCcccc-c---cccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH-HhhcccCCCEEe
Confidence            5788888887632 3   4444  7888888888888877778888888888888888888754454 778888888888


Q ss_pred             cCCCcccCccCccccCCCCCccEEEccCCccchhhhccccCCCCcccccEEEccCCCcCCccCCccccCCCCCcEEEecC
Q 003893          129 LSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSH  208 (788)
Q Consensus       129 l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  208 (788)
                      +++|+++ .++..   .+++                                                    |++|++++
T Consensus        76 Ls~N~l~-~lp~~---~l~~----------------------------------------------------L~~L~L~~   99 (520)
T 2z7x_B           76 LSHNKLV-KISCH---PTVN----------------------------------------------------LKHLDLSF   99 (520)
T ss_dssp             CCSSCCC-EEECC---CCCC----------------------------------------------------CSEEECCS
T ss_pred             cCCCcee-ecCcc---ccCC----------------------------------------------------ccEEeccC
Confidence            8888765 23311   3444                                                    44444444


Q ss_pred             CCCCc-cCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCc--CEEEccCCcC--cccCChhhhhcCCCCcEEEeeCC
Q 003893          209 IKMNE-EFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL--RLLDVSKNNF--QGHIPLEIGDILSRLTVFNISMN  283 (788)
Q Consensus       209 ~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~n~l--~~~~~~~~~~~~~~L~~L~L~~n  283 (788)
                      |.+++ .+|.. ++++++|++|++++|.+++   ..+..+++|  ++|++++|.+  .+..|..+...-.+...+++++|
T Consensus       100 N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n  175 (520)
T 2z7x_B          100 NAFDALPICKE-FGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN  175 (520)
T ss_dssp             SCCSSCCCCGG-GGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSS
T ss_pred             Cccccccchhh-hccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccC
Confidence            44443 23444 3677888888888877764   234445555  6666666666  44444443321111224445555


Q ss_pred             cCCCCCC-ccccCCCCCCEEEccCCc-------CCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccC
Q 003893          284 ALDGSIP-SSFGNMNFLQFLDLSNNQ-------LTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEG  355 (788)
Q Consensus       284 ~l~~~~~-~~~~~l~~L~~L~L~~n~-------i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~  355 (788)
                      .+.+..+ ..+..+++|+.|++++|.       +.+.+| . +..+++|+.|++++|.+.+.....+             
T Consensus       176 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~-l~~l~~L~~L~l~~~~l~~~~~~~~-------------  240 (520)
T 2z7x_B          176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-K-LQTNPKLSNLTLNNIETTWNSFIRI-------------  240 (520)
T ss_dssp             SCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-G-GGGCTTCCEEEEEEEEEEHHHHHHH-------------
T ss_pred             cchhhhhhhhhhcccceeeccccccccccccceeecchh-h-hccccchhhccccccccCHHHHHHH-------------
Confidence            5443332 234455555555555554       222222 1 1234444444444444332111100             


Q ss_pred             ccCcccCCccCCCCCCCcEEEcccCcCCCCCCccc-----cCCCCccEEEccCCeeccCchhhhhcc---cCCcEEeccC
Q 003893          356 NHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWL-----GNLTVLRHIIMPKNHIEGPIPLEFCQL---RILQILDISD  427 (788)
Q Consensus       356 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~l~~  427 (788)
                            . .. ...++|++|++++|.+.+.+|..+     ..+++|+.+++++|.+ ......+..+   .+|+.|++++
T Consensus       241 ------~-~~-~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~  311 (520)
T 2z7x_B          241 ------L-QL-VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSG  311 (520)
T ss_dssp             ------H-HH-HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEES
T ss_pred             ------H-HH-hhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCC
Confidence                  0 00 012355556666665555555554     5666666666666666 2222333333   5677777777


Q ss_pred             CcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcc--c
Q 003893          428 NNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEG--E  505 (788)
Q Consensus       428 n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~  505 (788)
                      |.+...                        +  .+..+++|++|++++|++++..|..+..+++|++|++++|++++  .
T Consensus       312 n~l~~~------------------------~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~  365 (520)
T 2z7x_B          312 TRMVHM------------------------L--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK  365 (520)
T ss_dssp             SCCCCC------------------------C--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH
T ss_pred             Cccccc------------------------c--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcccc
Confidence            765421                        1  12466778888888888887777788888888888888888875  3


Q ss_pred             CcccccCCCCCCEEEccCCcCCccCcc-cccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceec
Q 003893          506 VPIQLCRLNQLQLLDLSNNNLHGHIPS-CFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYT  584 (788)
Q Consensus       506 ~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  584 (788)
                      .|..+..+++|++|++++|++++.+|. .+...+                                              
T Consensus       366 ~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~----------------------------------------------  399 (520)
T 2z7x_B          366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK----------------------------------------------  399 (520)
T ss_dssp             HHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT----------------------------------------------
T ss_pred             chHHHhhCCCCCEEECCCCcCCcccccchhccCc----------------------------------------------
Confidence            456677888888888888888763332 232222                                              


Q ss_pred             ccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCC
Q 003893          585 YQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNT  664 (788)
Q Consensus       585 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  664 (788)
                             +|++|++++|++++..|..+.  ++|+.|++++|+++ .+|..+..+++|++|++++|+++...+..+..+++
T Consensus       400 -------~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~  469 (520)
T 2z7x_B          400 -------SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS  469 (520)
T ss_dssp             -------TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             -------cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCc
Confidence                   677777777777766655543  57777777777777 45555557777777777777777433333666777


Q ss_pred             CcEEecccCcCcccCC
Q 003893          665 LAVFSVAYNNLSGKIP  680 (788)
Q Consensus       665 L~~L~l~~N~l~~~~~  680 (788)
                      |+.|++++|+++|..+
T Consensus       470 L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          470 LQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CCEEECCSSCBCCCHH
T ss_pred             ccEEECcCCCCcccCC
Confidence            7777777777766533

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.2e-43  Score=392.56  Aligned_cols=444  Identities=20%  Similarity=0.203  Sum_probs=364.8

Q ss_pred             CCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCcCEEEccCCcCcccCChhhhh
Q 003893          191 FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGD  270 (788)
Q Consensus       191 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  270 (788)
                      +|..+.  ++|++|++++|.+++..+.. +.++++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..   
T Consensus        15 ip~~~~--~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---   87 (520)
T 2z7x_B           15 VPKDLS--QKTTILNISQNYISELWTSD-ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---   87 (520)
T ss_dssp             CCCSCC--TTCSEEECCSSCCCCCCHHH-HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---
T ss_pred             cccccc--ccccEEECCCCcccccChhh-ccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---
Confidence            444443  78999999999997665555 489999999999999999988889999999999999999998 67766   


Q ss_pred             cCCCCcEEEeeCCcCCC-CCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCC--cEEEcccccc--CccccccccCC
Q 003893          271 ILSRLTVFNISMNALDG-SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSL--RSLALSNNNL--EGHMFSRNFNL  345 (788)
Q Consensus       271 ~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L--~~L~l~~n~i--~~~~~~~~~~l  345 (788)
                      .+++|++|++++|.+++ ..|..++.+++|++|++++|.+++    ..+..+++|  ++|++++|.+  .+..+..+..+
T Consensus        88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l  163 (520)
T 2z7x_B           88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF  163 (520)
T ss_dssp             CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTC
T ss_pred             ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeeccccccccccccccccc
Confidence            48899999999999987 467899999999999999999973    223457788  9999999999  66666666555


Q ss_pred             C-ccCceeccCccCcccCC-ccCCCCCCCcEEEcccCc-------CCCCCCccccCCCCccEEEccCCeeccCchhhhh-
Q 003893          346 T-NLIWLQLEGNHFVGEIP-QSLSKCSSLQGLFLSNNS-------LSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFC-  415 (788)
Q Consensus       346 ~-~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~-------l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-  415 (788)
                      . +...+++++|.+.+..+ ..+..+++|+.+++++|.       +.+.++ .+..+++|+.|++++|.+.+..+..+. 
T Consensus       164 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~  242 (520)
T 2z7x_B          164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQ  242 (520)
T ss_dssp             CEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHH
T ss_pred             ccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHH
Confidence            4 34467888888776444 467789999999999986       444444 678899999999999988754433222 


Q ss_pred             --cccCCcEEeccCCcCCCCCCCC------CCCCcccEEEccCcccccccCccccccc---ccccEEeCCCCccCCCCCc
Q 003893          416 --QLRILQILDISDNNISGSLPSC------YDFVCIEQVHLSKNMLHGQLKEGTFFNC---LTLMILDLSYNHLNGNIPD  484 (788)
Q Consensus       416 --~l~~L~~L~l~~n~~~~~~~~~------~~~~~L~~L~l~~n~~~~~~~~~~~~~~---~~L~~L~l~~n~i~~~~~~  484 (788)
                        ..++|++|++++|.+.+..|..      ..++.|+.+++++|.+  .+|...+..+   .+|+.|++++|.+....  
T Consensus       243 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--  318 (520)
T 2z7x_B          243 LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--  318 (520)
T ss_dssp             HHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--
T ss_pred             HhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--
Confidence              2569999999999998777664      3488999999999988  5563344444   67999999999987432  


Q ss_pred             cccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCc--cCcccccccchhhhccCCCCCCCcccceeecCCc
Q 003893          485 RVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHG--HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGM  562 (788)
Q Consensus       485 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  562 (788)
                      .+..+++|++|++++|++++..|..+..+++|++|++++|++++  ..|..+..++                        
T Consensus       319 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~------------------------  374 (520)
T 2z7x_B          319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK------------------------  374 (520)
T ss_dssp             CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT------------------------
T ss_pred             chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCC------------------------
Confidence            23678999999999999998889999999999999999999986  3345555544                        


Q ss_pred             ccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcc-cccccccCCeEeCCCCCCCCCCCcccCCCCCC
Q 003893          563 DVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPP-QIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNI  641 (788)
Q Consensus       563 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  641 (788)
                                                   +|++|++++|.+++.+|. .+..+++|++|++++|++++..|..+.  ++|
T Consensus       375 -----------------------------~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L  423 (520)
T 2z7x_B          375 -----------------------------SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRI  423 (520)
T ss_dssp             -----------------------------TCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTC
T ss_pred             -----------------------------CCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccC
Confidence                                         899999999999984554 588999999999999999987777664  799


Q ss_pred             CeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCCCCCCC
Q 003893          642 ESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLP  706 (788)
Q Consensus       642 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~  706 (788)
                      ++|++++|+++ .+|..+..+++|+.|++++|++++..+..+..+++++.+++.+||+.|+|+..
T Consensus       424 ~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~  487 (520)
T 2z7x_B          424 KVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  487 (520)
T ss_dssp             CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred             CEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCch
Confidence            99999999999 78888889999999999999999655555788999999999999999999753

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.1e-42  Score=400.99  Aligned_cols=439  Identities=19%  Similarity=0.235  Sum_probs=350.5

Q ss_pred             CCCcEEEecCCCCCccCchHHhhcCCCCCEEEc-cCCcccCcCccC----------------------------------
Q 003893          199 HDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSL-VNDSLVGPFRLP----------------------------------  243 (788)
Q Consensus       199 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l-~~~~~~~~~~~~----------------------------------  243 (788)
                      .+++.|+|+++.+.|.+|..+ +++++|++|+| ++|.+.+..+..                                  
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l-~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s  401 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAI-GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS  401 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGG-GGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEECccCCCCCcCchHH-hccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence            468889999999888888775 78999999999 777665542111                                  


Q ss_pred             -----------------ccCCCCcCEEEcc--CCcCcccCChhhhhcCCCCcEEEeeCCcCCC-----------------
Q 003893          244 -----------------IHSHKQLRLLDVS--KNNFQGHIPLEIGDILSRLTVFNISMNALDG-----------------  287 (788)
Q Consensus       244 -----------------~~~~~~L~~L~l~--~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~-----------------  287 (788)
                                       ......++.+.+.  .|.+++ +|..+.. +++|++|+|++|.+++                 
T Consensus       402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g  479 (876)
T 4ecn_A          402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ  479 (876)
T ss_dssp             HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred             HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccc
Confidence                             0111223333333  367775 8887766 8899999999999997                 


Q ss_pred             CCCcccc--CCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccc-cCc-ccccccc-------CCCccCceeccCc
Q 003893          288 SIPSSFG--NMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN-LEG-HMFSRNF-------NLTNLIWLQLEGN  356 (788)
Q Consensus       288 ~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~~~-------~l~~L~~L~l~~n  356 (788)
                      .+|..++  ++++|++|++++|.+.+.+|..+. ++++|++|++++|+ +++ ..|..+.       .+++|++|++++|
T Consensus       480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~-~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N  558 (876)
T 4ecn_A          480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN  558 (876)
T ss_dssp             HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG-GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred             cCChhhhhccCCCCCEEECcCCCCCccChHHHh-CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence            2788877  999999999999998888897665 69999999999998 876 5555444       4459999999999


Q ss_pred             cCcccCCc--cCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccC-CcEEeccCCcCCCC
Q 003893          357 HFVGEIPQ--SLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRI-LQILDISDNNISGS  433 (788)
Q Consensus       357 ~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~  433 (788)
                      .+. .+|.  .+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .
T Consensus       559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~  633 (876)
T 4ecn_A          559 NLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-Y  633 (876)
T ss_dssp             CCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-S
T ss_pred             cCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-c
Confidence            998 7787  8999999999999999998 677 8899999999999999998 77888999998 999999999998 5


Q ss_pred             CCCCCC-C--CcccEEEccCcccccccCcc--ccc--ccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccC
Q 003893          434 LPSCYD-F--VCIEQVHLSKNMLHGQLKEG--TFF--NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEV  506 (788)
Q Consensus       434 ~~~~~~-~--~~L~~L~l~~n~~~~~~~~~--~~~--~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~  506 (788)
                      +|..+. .  ++|+.|++++|.+.+.++..  .+.  .+++|++|++++|.++...+..+..+++|+.|++++|++. .+
T Consensus       634 lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~i  712 (876)
T 4ecn_A          634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SI  712 (876)
T ss_dssp             CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CC
T ss_pred             CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-cc
Confidence            555544 3  45999999999998766531  111  4458999999999999444344568999999999999998 45


Q ss_pred             cccccC--------CCCCCEEEccCCcCCccCccccc--ccchhhhccCCCCCCCcccceeecCCcccCcccccccceEe
Q 003893          507 PIQLCR--------LNQLQLLDLSNNNLHGHIPSCFD--NTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDF  576 (788)
Q Consensus       507 ~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  576 (788)
                      |..+..        +++|++|+|++|+++ .+|..+.  .++                                      
T Consensus       713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~--------------------------------------  753 (876)
T 4ecn_A          713 PENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP--------------------------------------  753 (876)
T ss_dssp             CTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCT--------------------------------------
T ss_pred             ChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCC--------------------------------------
Confidence            544332        238999999999998 4454443  333                                      


Q ss_pred             eecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCC------CCCCCCCCcccCCCCCCCeeeCCCcc
Q 003893          577 TTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSH------NNLAGPIPSTFSNLRNIESLDLSYNK  650 (788)
Q Consensus       577 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~~~~~~l~~L~~L~Ls~N~  650 (788)
                                     +|+.|+|++|.+++ +|..+..+++|+.|+|++      |++.+.+|..|..+++|++|+|++|+
T Consensus       754 ---------------~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~  817 (876)
T 4ecn_A          754 ---------------YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND  817 (876)
T ss_dssp             ---------------TCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred             ---------------CcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence                           89999999999997 788899999999999976      88888999999999999999999999


Q ss_pred             cCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCC--CCCC
Q 003893          651 LSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLC--GPPL  705 (788)
Q Consensus       651 l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C--~~~~  705 (788)
                      + +.+|..+.  ++|+.||+++|++....+..++.........+.+|++.|  +|+.
T Consensus       818 L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~~  871 (876)
T 4ecn_A          818 I-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDA  871 (876)
T ss_dssp             C-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCGG
T ss_pred             C-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCCC
Confidence            9 57888765  699999999999998887777776667777888888776  7763

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.9e-42  Score=397.42  Aligned_cols=392  Identities=17%  Similarity=0.216  Sum_probs=249.6

Q ss_pred             cCCccCCccccCCCCCcEEEecCCCCCc-----------------cCchHH-hhcCCCCCEEEccCCcccCcCccCccCC
Q 003893          186 RDGITFPKFLYNQHDLEYVRLSHIKMNE-----------------EFPNWL-LENNTKLRQLSLVNDSLVGPFRLPIHSH  247 (788)
Q Consensus       186 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----------------~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~  247 (788)
                      .+.+ +|..+.++++|++|++++|.+++                 .+|..+ +.++++|++|++++|.+.+..+..+..+
T Consensus       436 ~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L  514 (876)
T 4ecn_A          436 RITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL  514 (876)
T ss_dssp             EEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred             cccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence            3344 67777778888888888888776                 255554 2367777777777777766666667777


Q ss_pred             CCcCEEEccCCc-Ccc-cCChhhhhc------CCCCcEEEeeCCcCCCCCCc--cccCCCCCCEEEccCCcCCCccchHH
Q 003893          248 KQLRLLDVSKNN-FQG-HIPLEIGDI------LSRLTVFNISMNALDGSIPS--SFGNMNFLQFLDLSNNQLTGEIPEHL  317 (788)
Q Consensus       248 ~~L~~L~l~~n~-l~~-~~~~~~~~~------~~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~~~~~~  317 (788)
                      ++|+.|++++|. +++ .+|..+...      +++|++|++++|.+. .+|.  .+..+++|+.|++++|.++ .+|  .
T Consensus       515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~  590 (876)
T 4ecn_A          515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--A  590 (876)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--C
T ss_pred             CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--h
Confidence            777777777776 665 566555431      236677777776666 5555  6666666777777766666 666  3


Q ss_pred             hhCCCCCcEEEccccccCccccccccCCCc-cCceeccCccCcccCCccCCCCCC--CcEEEcccCcCCCCCCccc---c
Q 003893          318 AMGCVSLRSLALSNNNLEGHMFSRNFNLTN-LIWLQLEGNHFVGEIPQSLSKCSS--LQGLFLSNNSLSGKIPRWL---G  391 (788)
Q Consensus       318 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~l---~  391 (788)
                      +..+++|++|++++|.+. ..+..+.++++ |++|++++|.+. .+|..+..++.  |+.|++++|.+.+.+|...   .
T Consensus       591 ~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~  668 (876)
T 4ecn_A          591 FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD  668 (876)
T ss_dssp             CCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred             hcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence            345666666666666666 44445556666 666666666666 45555554433  6666666666655443211   1


Q ss_pred             --CCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCccccccccccc
Q 003893          392 --NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLM  469 (788)
Q Consensus       392 --~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  469 (788)
                        .+++|+.|++++|.+....+..+..+++|+.|++++|.+.......+..                 ....+.++++|+
T Consensus       669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~-----------------~~~~l~nl~~L~  731 (876)
T 4ecn_A          669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP-----------------KDGNYKNTYLLT  731 (876)
T ss_dssp             TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSC-----------------TTSCCTTGGGCC
T ss_pred             cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcc-----------------ccccccccCCcc
Confidence              2235666666666665333333445566666666666554221111100                 000122344666


Q ss_pred             EEeCCCCccCCCCCcccc--CCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCC
Q 003893          470 ILDLSYNHLNGNIPDRVD--GLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGS  547 (788)
Q Consensus       470 ~L~l~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~  547 (788)
                      +|++++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|++++|+                      
T Consensus       732 ~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~----------------------  787 (876)
T 4ecn_A          732 TIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR----------------------  787 (876)
T ss_dssp             EEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB----------------------
T ss_pred             EEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC----------------------
Confidence            6666666666 4555554  56666666666666664 45556666666666666653                      


Q ss_pred             CCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCC
Q 003893          548 SLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNL  627 (788)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  627 (788)
                                                                       ++++|.+.+.+|..+..+++|+.|+|++|++
T Consensus       788 -------------------------------------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          788 -------------------------------------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI  818 (876)
T ss_dssp             -------------------------------------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             -------------------------------------------------CcccccccccChHHHhcCCCCCEEECCCCCC
Confidence                                                             2345788888999999999999999999999


Q ss_pred             CCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcc
Q 003893          628 AGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG  677 (788)
Q Consensus       628 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~  677 (788)
                       +.+|..+.  ++|+.|||++|++....+..+.....+..+.+.+|++..
T Consensus       819 -~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~  865 (876)
T 4ecn_A          819 -RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD  865 (876)
T ss_dssp             -CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred             -CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence             46777765  699999999999987777777666667777788887654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.3e-42  Score=395.23  Aligned_cols=415  Identities=20%  Similarity=0.243  Sum_probs=261.2

Q ss_pred             CCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcC---------------------------------ccCc-
Q 003893          199 HDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPF---------------------------------RLPI-  244 (788)
Q Consensus       199 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---------------------------------~~~~-  244 (788)
                      .+++.|+++++.+.|.+|..+ +++++|++|++++|.+....                                 +..+ 
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l-~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~  159 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAI-GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS  159 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGG-GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEEecCcccCCcCChHH-hcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence            479999999999999999875 89999999999999652110                                 0000 


Q ss_pred             ------------------cCCCCcCEEEcc--CCcCcccCChhhhhcCCCCcEEEeeCCcCCCC----------------
Q 003893          245 ------------------HSHKQLRLLDVS--KNNFQGHIPLEIGDILSRLTVFNISMNALDGS----------------  288 (788)
Q Consensus       245 ------------------~~~~~L~~L~l~--~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~----------------  288 (788)
                                        .....++.+.+.  .|.+++ +|..+.. +++|++|++++|.+++.                
T Consensus       160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~  237 (636)
T 4eco_A          160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQ  237 (636)
T ss_dssp             HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred             HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhc-ccCCCEEECcCCccccccccccccccccchhcc
Confidence                              001112222222  456665 7776655 67788888888877764                


Q ss_pred             -CCcccc--CCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccc-cCc-cccccccCC------CccCceeccCcc
Q 003893          289 -IPSSFG--NMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNN-LEG-HMFSRNFNL------TNLIWLQLEGNH  357 (788)
Q Consensus       289 -~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~~~~l------~~L~~L~l~~n~  357 (788)
                       +|..++  ++++|++|++++|.+.+.+|..+. ++++|++|++++|+ +++ ..|..+..+      ++|++|++++|.
T Consensus       238 ~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~  316 (636)
T 4eco_A          238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN  316 (636)
T ss_dssp             HTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred             cCchhhhhcccCCCCEEEecCCcCCccChHHHh-cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence             677777  778888888888877777776554 57778888888877 766 555555554      778888888887


Q ss_pred             CcccCCc--cCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccC-CcEEeccCCcCCCCC
Q 003893          358 FVGEIPQ--SLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRI-LQILDISDNNISGSL  434 (788)
Q Consensus       358 ~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~  434 (788)
                      +. .+|.  .+..+++|++|++++|.+.+.+| .+..+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+
T Consensus       317 l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~l  392 (636)
T 4eco_A          317 LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YI  392 (636)
T ss_dssp             CS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SC
T ss_pred             CC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-cc
Confidence            77 6666  67777788888888887776666 6777777888888877777 56666777777 788888777776 34


Q ss_pred             CCCCC---CCcccEEEccCcccccccCccccc-------ccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcc
Q 003893          435 PSCYD---FVCIEQVHLSKNMLHGQLKEGTFF-------NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEG  504 (788)
Q Consensus       435 ~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~-------~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~  504 (788)
                      |..+.   +++|+.|++++|.+.+..|. .+.       .+++|++|++++|.++...+..+..+++|++|++++|+++.
T Consensus       393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~  471 (636)
T 4eco_A          393 PNIFDAKSVSVMSAIDFSYNEIGSVDGK-NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE  471 (636)
T ss_dssp             CSCCCTTCSSCEEEEECCSSCTTTTTTC-SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB
T ss_pred             chhhhhcccCccCEEECcCCcCCCcchh-hhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCC
Confidence            43332   23566666666666554443 343       44566666666666663333334455666666666666652


Q ss_pred             cCcccccCCC-------CCCEEEccCCcCCccCccccc--ccchhhhccCCCCCCCcccceeecCCcccCcccccccceE
Q 003893          505 EVPIQLCRLN-------QLQLLDLSNNNLHGHIPSCFD--NTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFD  575 (788)
Q Consensus       505 ~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  575 (788)
                      ..+..+....       +|++|++++|+++. +|..+.  .++                                     
T Consensus       472 i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l~-------------------------------------  513 (636)
T 4eco_A          472 IPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLP-------------------------------------  513 (636)
T ss_dssp             CCSSSSEETTEECTTGGGCCEEECCSSCCCB-CCGGGSTTTCT-------------------------------------
T ss_pred             cCHHHhccccccccccCCccEEECcCCcCCc-cChhhhhccCC-------------------------------------
Confidence            2222222221       56666666666652 332222  222                                     


Q ss_pred             eeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeC------CCCCCCCCCCcccCCCCCCCeeeCCCc
Q 003893          576 FTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNL------SHNNLAGPIPSTFSNLRNIESLDLSYN  649 (788)
Q Consensus       576 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~Ls~N  649 (788)
                                      +|+.|++++|++++ +|..+..+++|+.|+|      ++|++.+.+|..+..+++|++|++++|
T Consensus       514 ----------------~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  576 (636)
T 4eco_A          514 ----------------YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN  576 (636)
T ss_dssp             ----------------TCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred             ----------------CcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC
Confidence                            56666666666664 5555666666666666      345555556666666666666666666


Q ss_pred             ccCccCchhhhcCCCCcEEecccCcCcccCC
Q 003893          650 KLSWKIPYQLVELNTLAVFSVAYNNLSGKIP  680 (788)
Q Consensus       650 ~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  680 (788)
                      +++ .+|..+.  ++|+.|++++|++.+...
T Consensus       577 ~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~  604 (636)
T 4eco_A          577 DIR-KVNEKIT--PNISVLDIKDNPNISIDL  604 (636)
T ss_dssp             CCC-BCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred             cCC-ccCHhHh--CcCCEEECcCCCCccccH
Confidence            663 4555443  566666666666554433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=6.3e-40  Score=369.61  Aligned_cols=463  Identities=19%  Similarity=0.153  Sum_probs=283.3

Q ss_pred             CCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCCCC
Q 003893           45 MPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSI  124 (788)
Q Consensus        45 l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L  124 (788)
                      +...+++++++++++.. |   ..+.  ++|++|++++|.+++..|..|.++++|++|++++|.+++..|. .|.++++|
T Consensus        30 ~~~~~~l~ls~~~L~~i-p---~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L  102 (562)
T 3a79_B           30 NELESMVDYSNRNLTHV-P---KDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH-VFLFNQDL  102 (562)
T ss_dssp             ---CCEEECTTSCCCSC-C---TTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTT-TTTTCTTC
T ss_pred             cCCCcEEEcCCCCCccC-C---CCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHH-HhCCCCCC
Confidence            44557788887777542 2   3332  6777888888877776667777777788888877777744344 67777777


Q ss_pred             CEEEcCCCcccCccCccccCCCCCccEEEccCCccchhhhccccCCCCcccccEEEccCCCcCCccCCccccCCCCCcEE
Q 003893          125 EDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYV  204 (788)
Q Consensus       125 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  204 (788)
                      ++|++++|.++ .++..   .+++|                                                    ++|
T Consensus       103 ~~L~Ls~N~l~-~lp~~---~l~~L----------------------------------------------------~~L  126 (562)
T 3a79_B          103 EYLDVSHNRLQ-NISCC---PMASL----------------------------------------------------RHL  126 (562)
T ss_dssp             CEEECTTSCCC-EECSC---CCTTC----------------------------------------------------SEE
T ss_pred             CEEECCCCcCC-ccCcc---ccccC----------------------------------------------------CEE
Confidence            77777777765 23311   34444                                                    444


Q ss_pred             EecCCCCCc-cCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCc--CEEEccCCcC--cccCChhhhhcCC-CCcEE
Q 003893          205 RLSHIKMNE-EFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL--RLLDVSKNNF--QGHIPLEIGDILS-RLTVF  278 (788)
Q Consensus       205 ~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~n~l--~~~~~~~~~~~~~-~L~~L  278 (788)
                      ++++|.+++ ..|.. ++++++|++|++++|.+.+..   +..++.|  ++|++++|.+  ++..|..+.. +. ..-.+
T Consensus       127 ~Ls~N~l~~l~~p~~-~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~-l~~~~l~l  201 (562)
T 3a79_B          127 DLSFNDFDVLPVCKE-FGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYHIKGGETESLQI-PNTTVLHL  201 (562)
T ss_dssp             ECCSSCCSBCCCCGG-GGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSCCCCSSSCCEEEE-CCEEEEEE
T ss_pred             ECCCCCccccCchHh-hcccCcccEEecCCCccccCc---hhhhhhceeeEEEeecccccccccCcccccc-cCcceEEE
Confidence            444444433 22333 468888888888888876533   3333444  7777777776  5455544332 11 11244


Q ss_pred             EeeCCcCCCCCCc-cccCCCCCCEEEccCCcCCC-ccch--HHhhCCCCCcEEEccccccCccccccccCCCccCceecc
Q 003893          279 NISMNALDGSIPS-SFGNMNFLQFLDLSNNQLTG-EIPE--HLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLE  354 (788)
Q Consensus       279 ~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~-~~~~--~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~  354 (788)
                      ++++|.+.+..+. .+..+++|+.+++++|.... .++.  ..+.++++|+.++++++.+.+...               
T Consensus       202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~---------------  266 (562)
T 3a79_B          202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS---------------  266 (562)
T ss_dssp             EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHH---------------
T ss_pred             EecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHH---------------
Confidence            5666665543332 34566667777776664210 0111  112345566666665554432111               


Q ss_pred             CccCcccCCccCCCCCCCcEEEcccCcCCCCCCccc-----cCCCCccEEEccCCeeccCchhhhhc---ccCCcEEecc
Q 003893          355 GNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWL-----GNLTVLRHIIMPKNHIEGPIPLEFCQ---LRILQILDIS  426 (788)
Q Consensus       355 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~~~~~~~~~~~~---l~~L~~L~l~  426 (788)
                          .+. +.. ...++|++|++++|.+.+.+|..+     ..++.|+.+++..+.+ ......+..   ..+|+.|+++
T Consensus       267 ----~~~-~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~  339 (562)
T 3a79_B          267 ----VKL-FQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSIS  339 (562)
T ss_dssp             ----HHH-HHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEE
T ss_pred             ----HHH-HHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEcc
Confidence                000 000 112255555555555555555444     4444555555555544 121122222   2567777777


Q ss_pred             CCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCccc-
Q 003893          427 DNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGE-  505 (788)
Q Consensus       427 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-  505 (788)
                      +|.+...                        .  ....+++|++|++++|.+++..|..+..+++|++|++++|++++. 
T Consensus       340 ~n~~~~~------------------------~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  393 (562)
T 3a79_B          340 DTPFIHM------------------------V--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF  393 (562)
T ss_dssp             SSCCCCC------------------------C--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT
T ss_pred             CCCcccc------------------------c--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc
Confidence            7765411                        0  124677888888888888877788888888888888888888753 


Q ss_pred             -CcccccCCCCCCEEEccCCcCCccCc-ccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCcee
Q 003893          506 -VPIQLCRLNQLQLLDLSNNNLHGHIP-SCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITY  583 (788)
Q Consensus       506 -~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  583 (788)
                       .|..+..+++|++|++++|++++.+| ..+..+.                                             
T Consensus       394 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~---------------------------------------------  428 (562)
T 3a79_B          394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE---------------------------------------------  428 (562)
T ss_dssp             HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT---------------------------------------------
T ss_pred             cchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc---------------------------------------------
Confidence             24567888888888888888876333 3343332                                             


Q ss_pred             cccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchh-hhcC
Q 003893          584 TYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQ-LVEL  662 (788)
Q Consensus       584 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-l~~l  662 (788)
                              +|++|++++|++++..|..+.  ++|+.|+|++|+++ .+|..+..+++|++|++++|+++. +|.. +..+
T Consensus       429 --------~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l  496 (562)
T 3a79_B          429 --------SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRL  496 (562)
T ss_dssp             --------TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTC
T ss_pred             --------cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcC
Confidence                    788888888888766665544  68888888888888 455555588888888888888884 4444 7788


Q ss_pred             CCCcEEecccCcCcccCC
Q 003893          663 NTLAVFSVAYNNLSGKIP  680 (788)
Q Consensus       663 ~~L~~L~l~~N~l~~~~~  680 (788)
                      ++|+.|++++|+++|..+
T Consensus       497 ~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          497 TSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             TTCCCEECCSCCBCCCHH
T ss_pred             CCCCEEEecCCCcCCCcc
Confidence            888888888888887654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=5.2e-39  Score=353.21  Aligned_cols=371  Identities=20%  Similarity=0.198  Sum_probs=234.2

Q ss_pred             CEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEcc
Q 003893          251 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALS  330 (788)
Q Consensus       251 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~  330 (788)
                      +.++.++++++ .+|. +   .++|++|++++|.+++..|..|.++++|++|++++|.+.+.++...+.++++|++|+++
T Consensus        13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            35666777776 6665 2   36888888888888877788888888888888888888767776666778888888888


Q ss_pred             ccccCccccccccCCCccCceeccCccCcccCCc--cCCCCCCCcEEEcccCcCCCCCCcc-ccCCCCccEEEccCCeec
Q 003893          331 NNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ--SLSKCSSLQGLFLSNNSLSGKIPRW-LGNLTVLRHIIMPKNHIE  407 (788)
Q Consensus       331 ~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~  407 (788)
                      +|.+++..+..+.++++|++|++++|.+.+..+.  .+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            8888887778888888888888888888764333  3788888888888888888776665 778888888888888888


Q ss_pred             cCchhhhhcc--cCCcEEeccCCcCCCCCCCC---------CCCCcccEEEccCcccccccCcccccc---cccccEEeC
Q 003893          408 GPIPLEFCQL--RILQILDISDNNISGSLPSC---------YDFVCIEQVHLSKNMLHGQLKEGTFFN---CLTLMILDL  473 (788)
Q Consensus       408 ~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~---------~~~~~L~~L~l~~n~~~~~~~~~~~~~---~~~L~~L~l  473 (788)
                      +..+..+..+  .+|+.|++++|.+.+..+..         +.+++|++|++++|.+.+..+. .+..   .++|+.|++
T Consensus       168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~~~~~~L~~L~l  246 (455)
T 3v47_A          168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK-RFFDAIAGTKIQSLIL  246 (455)
T ss_dssp             CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH-HHHHHTTTCCEEEEEC
T ss_pred             ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchh-hhhccccccceeeEee
Confidence            7777777665  67888888888877554432         2345677777777766655444 3322   256777777


Q ss_pred             CCCccCCCC----------CccccC--CcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhh
Q 003893          474 SYNHLNGNI----------PDRVDG--LSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE  541 (788)
Q Consensus       474 ~~n~i~~~~----------~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  541 (788)
                      ++|...+..          +..+.+  .++|+.|++++|.+.+..|..+..+++|++|++++|++.+..|..+..+.   
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---  323 (455)
T 3v47_A          247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT---  323 (455)
T ss_dssp             TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT---
T ss_pred             ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc---
Confidence            766543221          111111  13455555555555544444455555555555555555444444433332   


Q ss_pred             hccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEe
Q 003893          542 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLN  621 (788)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  621 (788)
                                                                        +|++|++++|.+++..|..|..+++|++|+
T Consensus       324 --------------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          324 --------------------------------------------------HLLKLNLSQNFLGSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             --------------------------------------------------TCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred             --------------------------------------------------cCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence                                                              444555555555444444444455555555


Q ss_pred             CCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCC
Q 003893          622 LSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIP  680 (788)
Q Consensus       622 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  680 (788)
                      |++|++++..|..|..+++|++|++++|++++..+..+..+++|+.|++++|++++.+|
T Consensus       354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            55555544444444445555555555555544333344444455555555555544444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=7.4e-40  Score=369.08  Aligned_cols=437  Identities=21%  Similarity=0.194  Sum_probs=325.8

Q ss_pred             CCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCcCEEEccCCcCcccCChhhhhcCCCCcE
Q 003893          198 QHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTV  277 (788)
Q Consensus       198 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~  277 (788)
                      +...++++++++.+++ +|..+   .++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+.. +++|++
T Consensus        30 ~~~~~~l~ls~~~L~~-ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~  104 (562)
T 3a79_B           30 NELESMVDYSNRNLTH-VPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF-NQDLEY  104 (562)
T ss_dssp             ---CCEEECTTSCCCS-CCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTT-CTTCCE
T ss_pred             cCCCcEEEcCCCCCcc-CCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCC-CCCCCE
Confidence            4455889999998864 66543   378999999999998888888889999999999999988554554444 789999


Q ss_pred             EEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccch-HHhhCCCCCcEEEccccccCccccccccCCCcc--Cceecc
Q 003893          278 FNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPE-HLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNL--IWLQLE  354 (788)
Q Consensus       278 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L--~~L~l~  354 (788)
                      |++++|.++ .+|..  .+++|++|++++|.++ .++. ..+.++++|++|++++|.+...   .+..+++|  ++|+++
T Consensus       105 L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~-~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~  177 (562)
T 3a79_B          105 LDVSHNRLQ-NISCC--PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLD  177 (562)
T ss_dssp             EECTTSCCC-EECSC--CCTTCSEEECCSSCCS-BCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEE
T ss_pred             EECCCCcCC-ccCcc--ccccCCEEECCCCCcc-ccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEee
Confidence            999999988 45554  7899999999999988 5442 3445689999999999988763   34445555  999999


Q ss_pred             CccC--cccCCccCCCCC--CCcEEEcccCcCCCCCCc-cccCCCCccEEEccCCeec----cCchhhhhcccCCcEEec
Q 003893          355 GNHF--VGEIPQSLSKCS--SLQGLFLSNNSLSGKIPR-WLGNLTVLRHIIMPKNHIE----GPIPLEFCQLRILQILDI  425 (788)
Q Consensus       355 ~n~~--~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~----~~~~~~~~~l~~L~~L~l  425 (788)
                      +|.+  .+..+..+..+.  .+ .++++.|.+.+..+. .+..+++|+.+++++|...    ......+..++.|+.+++
T Consensus       178 ~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L  256 (562)
T 3a79_B          178 LVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL  256 (562)
T ss_dssp             ESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEE
T ss_pred             cccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEe
Confidence            9988  767777776654  23 557778877665443 4567889999999988511    122345778889999998


Q ss_pred             cCCcCCCCC----CCCCCCCcccEEEccCcccccccCcccc----cccc--------------------------cccEE
Q 003893          426 SDNNISGSL----PSCYDFVCIEQVHLSKNMLHGQLKEGTF----FNCL--------------------------TLMIL  471 (788)
Q Consensus       426 ~~n~~~~~~----~~~~~~~~L~~L~l~~n~~~~~~~~~~~----~~~~--------------------------~L~~L  471 (788)
                      +++.+.+..    +.....++|++|++++|.+.+.+|...|    ..++                          +|++|
T Consensus       257 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L  336 (562)
T 3a79_B          257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML  336 (562)
T ss_dssp             EEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEE
T ss_pred             cCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEE
Confidence            887665321    1122345899999999999887776432    2333                          35566


Q ss_pred             eCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccC--cccccccchhhhccCCCCC
Q 003893          472 DLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI--PSCFDNTTLHERYNNGSSL  549 (788)
Q Consensus       472 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~~~~~~~~~~~  549 (788)
                      ++++|.+....  ....+++|++|++++|.+++..|..+..+++|++|++++|++++..  |..+..++           
T Consensus       337 ~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-----------  403 (562)
T 3a79_B          337 SISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS-----------  403 (562)
T ss_dssp             EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT-----------
T ss_pred             EccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCC-----------
Confidence            66666554221  1256677777777777777667777777777777777777776543  23333333           


Q ss_pred             CCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCc-ccccccccCCeEeCCCCCCC
Q 003893          550 QPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIP-PQIGNLTKIQTLNLSHNNLA  628 (788)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~  628 (788)
                                                                +|++|++++|.+++.+| ..+..+++|++|++++|+++
T Consensus       404 ------------------------------------------~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~  441 (562)
T 3a79_B          404 ------------------------------------------SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT  441 (562)
T ss_dssp             ------------------------------------------TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCC
T ss_pred             ------------------------------------------CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCC
Confidence                                                      89999999999998444 45889999999999999998


Q ss_pred             CCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCCCCCC
Q 003893          629 GPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL  705 (788)
Q Consensus       629 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~  705 (788)
                      +..|..+.  ++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..+..++.++.+++++|||.|+|+.
T Consensus       442 ~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          442 GSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             GGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             cchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            77666554  79999999999999 6777777999999999999999965555488999999999999999999874

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=9.2e-38  Score=343.31  Aligned_cols=382  Identities=20%  Similarity=0.190  Sum_probs=309.1

Q ss_pred             EEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeC
Q 003893          203 YVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISM  282 (788)
Q Consensus       203 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~  282 (788)
                      .++.+++.++ .+|.    -.++|++|++++|.+++..+..+..+++|++|++++|.+.+.++...+..+++|++|++++
T Consensus        14 ~~~c~~~~l~-~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           14 NAICINRGLH-QVPE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             EEECCSSCCS-SCCC----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             ccCcCCCCcc-cCCC----CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            4555555553 3443    1267888888888888877778888888999999888887666655555588899999999


Q ss_pred             CcCCCCCCccccCCCCCCEEEccCCcCCCccchH-HhhCCCCCcEEEccccccCcccccc-ccCCCccCceeccCccCcc
Q 003893          283 NALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEH-LAMGCVSLRSLALSNNNLEGHMFSR-NFNLTNLIWLQLEGNHFVG  360 (788)
Q Consensus       283 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~~l~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~l~~n~~~~  360 (788)
                      |.+.+..|..|.++++|++|++++|.+++.++.. .+..+++|++|++++|.+.+..+.. +.++++|++|++++|.+.+
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            9888777888889999999999999887544433 3556888999999999988876655 7788999999999999887


Q ss_pred             cCCccCCCC--CCCcEEEcccCcCCCCCCccc--------cCCCCccEEEccCCeeccCchhhhhcc---cCCcEEeccC
Q 003893          361 EIPQSLSKC--SSLQGLFLSNNSLSGKIPRWL--------GNLTVLRHIIMPKNHIEGPIPLEFCQL---RILQILDISD  427 (788)
Q Consensus       361 ~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~l--------~~l~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~l~~  427 (788)
                      ..+..+..+  .+|+.|++++|.+.+..+..+        ..+++|++|++++|.+.+..+..+...   ++|+.|++++
T Consensus       169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~  248 (455)
T 3v47_A          169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN  248 (455)
T ss_dssp             CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred             cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence            777777665  688899999998886554432        356889999999999988888777654   8899999999


Q ss_pred             CcCCCCCCCCCCCCcccEEEccCcccccccCcccccc--cccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCccc
Q 003893          428 NNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFN--CLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGE  505 (788)
Q Consensus       428 n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~  505 (788)
                      |...+.......+..              .....+..  .++|++|++++|.+.+..|..+..+++|++|++++|.+++.
T Consensus       249 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  314 (455)
T 3v47_A          249 SYNMGSSFGHTNFKD--------------PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI  314 (455)
T ss_dssp             CTTTSCCTTCCSSCC--------------CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred             ccccccccchhhhcc--------------CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence            876543322111111              11112222  36899999999999988899999999999999999999988


Q ss_pred             CcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecc
Q 003893          506 VPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTY  585 (788)
Q Consensus       506 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  585 (788)
                      .+..+..+++|++|++++|.+++..|..+..++                                               
T Consensus       315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----------------------------------------------  347 (455)
T 3v47_A          315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD-----------------------------------------------  347 (455)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT-----------------------------------------------
T ss_pred             ChhHhcCcccCCEEECCCCccCCcChhHhcCcc-----------------------------------------------
Confidence            888999999999999999999988887776655                                               


Q ss_pred             cCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCc
Q 003893          586 QGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIP  656 (788)
Q Consensus       586 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  656 (788)
                            +|++|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..|
T Consensus       348 ------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          348 ------KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             ------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ------cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence                  89999999999999999999999999999999999998888889999999999999999998776

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=6.5e-37  Score=332.66  Aligned_cols=315  Identities=29%  Similarity=0.373  Sum_probs=147.0

Q ss_pred             CCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEE
Q 003893          248 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSL  327 (788)
Q Consensus       248 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L  327 (788)
                      ++|++|++++|.++ .++..    .++|++|++++|.+++ +| .++.+++|++|++++|+++ .+|..    .++|++|
T Consensus       111 ~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L  178 (454)
T 1jl5_A          111 QSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFI  178 (454)
T ss_dssp             TTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEE
T ss_pred             CCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEE
Confidence            45566666666555 23221    2466667776666664 44 4666677777777777666 45532    2466666


Q ss_pred             EccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeec
Q 003893          328 ALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE  407 (788)
Q Consensus       328 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  407 (788)
                      ++++|.+++. + .+.++++|++|++++|.+.+ +|..   .++|++|++++|.+. .+| .+..+++|++|++++|.+.
T Consensus       179 ~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~  250 (454)
T 1jl5_A          179 AAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK  250 (454)
T ss_dssp             ECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS
T ss_pred             ECcCCcCCcC-c-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC
Confidence            6666666653 2 45566666666666666653 2321   135666666666665 344 2555666666666666555


Q ss_pred             cCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCcccc
Q 003893          408 GPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVD  487 (788)
Q Consensus       408 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~  487 (788)
                      +. |.   ..++|+.|++++|++.+                        ++.    .+++|++|++++|.+++. +.   
T Consensus       251 ~l-~~---~~~~L~~L~l~~N~l~~------------------------l~~----~~~~L~~L~ls~N~l~~l-~~---  294 (454)
T 1jl5_A          251 TL-PD---LPPSLEALNVRDNYLTD------------------------LPE----LPQSLTFLDVSENIFSGL-SE---  294 (454)
T ss_dssp             SC-CS---CCTTCCEEECCSSCCSC------------------------CCC----CCTTCCEEECCSSCCSEE-SC---
T ss_pred             cc-cc---cccccCEEECCCCcccc------------------------cCc----ccCcCCEEECcCCccCcc-cC---
Confidence            32 21   12455666666655542                        111    124556666666655531 11   


Q ss_pred             CCcCCcEEEccCccCcccCcccccCC-CCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCc
Q 003893          488 GLSQLSYLILAHNNLEGEVPIQLCRL-NQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDP  566 (788)
Q Consensus       488 ~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  566 (788)
                      ..++|+.|++++|++++.     ..+ ++|++|++++|++++. |..                                 
T Consensus       295 ~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~l-p~~---------------------------------  335 (454)
T 1jl5_A          295 LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIEL-PAL---------------------------------  335 (454)
T ss_dssp             CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSCC-CCC---------------------------------
T ss_pred             cCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCccccc-ccc---------------------------------
Confidence            114566666666665531     122 3566666666666542 111                                 


Q ss_pred             ccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCC--CCCcccCCCCCCCee
Q 003893          567 KKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAG--PIPSTFSNLRNIESL  644 (788)
Q Consensus       567 ~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L  644 (788)
                                             +++|++|++++|.+++ +|.   .+++|++|++++|++++  .+|..+..       
T Consensus       336 -----------------------~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~-------  381 (454)
T 1jl5_A          336 -----------------------PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED-------  381 (454)
T ss_dssp             -----------------------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE-------
T ss_pred             -----------------------CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh-------
Confidence                                   1256666666666663 343   35667777777777765  34444332       


Q ss_pred             eCCCcccCccCchhhhcCCCCcEEecccCcCcc--cCCCCccccCCCCcCCcCCCCCCC
Q 003893          645 DLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG--KIPERAAQFATFNESSYEGNPFLC  701 (788)
Q Consensus       645 ~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~--~~~~~~~~~~~l~~~~~~~Np~~C  701 (788)
                       ++.|...+.+|..   +++|+.|++++|++++  .+|..      +..+.+.+|.+.|
T Consensus       382 -L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~  430 (454)
T 1jl5_A          382 -LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVD  430 (454)
T ss_dssp             -EECCC-----------------------------------------------------
T ss_pred             -hhhcccccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCC
Confidence             2234444445442   3667777777777776  44542      3344455554444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=4e-36  Score=326.42  Aligned_cols=385  Identities=23%  Similarity=0.272  Sum_probs=189.9

Q ss_pred             CCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCc-------------CEEEccCCcCcccCC
Q 003893          199 HDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQL-------------RLLDVSKNNFQGHIP  265 (788)
Q Consensus       199 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L-------------~~L~l~~n~l~~~~~  265 (788)
                      ..|+++++++|.+ +.+|..+ +++++|++|++++|.+.+..+..++.+.+|             ++|++++|.++ .+|
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp   87 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLP   87 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCC
T ss_pred             ccchhhhcccCch-hhCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCC
Confidence            4566666666666 5666553 566666666666666666666655555544             66777766665 344


Q ss_pred             hhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCC
Q 003893          266 LEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNL  345 (788)
Q Consensus       266 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l  345 (788)
                      .    ..++|++|++++|.+++ +|..   .++|++|++++|.++ .++..    .++|++|++++|.+++. + .+.++
T Consensus        88 ~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~l-p-~~~~l  152 (454)
T 1jl5_A           88 E----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEKL-P-ELQNS  152 (454)
T ss_dssp             S----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSSC-C-CCTTC
T ss_pred             C----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCCC-c-ccCCC
Confidence            3    13566677777666664 4432   356666777666666 44321    24666666666666653 2 36666


Q ss_pred             CccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEec
Q 003893          346 TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI  425 (788)
Q Consensus       346 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  425 (788)
                      ++|++|++++|++.+ +|..   ..+|++|++++|.+.+ +| .+..+++|++|++++|.+.+. |..   .++|++|++
T Consensus       153 ~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L~l  222 (454)
T 1jl5_A          153 SFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PDL---PLSLESIVA  222 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CCC---CTTCCEEEC
T ss_pred             CCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CCC---cCcccEEEC
Confidence            666666666666653 3332   2366666666666664 33 456666666666666666542 211   245666666


Q ss_pred             cCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCccc
Q 003893          426 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGE  505 (788)
Q Consensus       426 ~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~  505 (788)
                      ++|.+. .++.+..+++|++|++++|.+.+ ++.    ..++|++|++++|++++ +|..   +++|++|++++|++++.
T Consensus       223 ~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l  292 (454)
T 1jl5_A          223 GNNILE-ELPELQNLPFLTTIYADNNLLKT-LPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL  292 (454)
T ss_dssp             CSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE
T ss_pred             cCCcCC-cccccCCCCCCCEEECCCCcCCc-ccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc
Confidence            666665 33344445555555555555543 222    12456666666666653 3322   25566666666666532


Q ss_pred             CcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecc
Q 003893          506 VPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTY  585 (788)
Q Consensus       506 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  585 (788)
                       +..   .++|++|++++|++++..                                                       
T Consensus       293 -~~~---~~~L~~L~l~~N~l~~i~-------------------------------------------------------  313 (454)
T 1jl5_A          293 -SEL---PPNLYYLNASSNEIRSLC-------------------------------------------------------  313 (454)
T ss_dssp             -SCC---CTTCCEEECCSSCCSEEC-------------------------------------------------------
T ss_pred             -cCc---CCcCCEEECcCCcCCccc-------------------------------------------------------
Confidence             110   145666666666554311                                                       


Q ss_pred             cCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCc--cCchhhhcCC
Q 003893          586 QGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW--KIPYQLVELN  663 (788)
Q Consensus       586 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~l~~l~  663 (788)
                        .+|++|++|++++|++++ +|..   +++|+.|++++|++++ +|.   .+++|++|++++|++++  .+|.++.   
T Consensus       314 --~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~---  380 (454)
T 1jl5_A          314 --DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVE---  380 (454)
T ss_dssp             --CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCC---
T ss_pred             --CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHH---
Confidence              123366777777777764 3432   4667777777777763 343   35677777777777765  4444332   


Q ss_pred             CCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCC
Q 003893          664 TLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLC  701 (788)
Q Consensus       664 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C  701 (788)
                           +++.|.+.+.+|..   +++++.+++++|++..
T Consensus       381 -----~L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          381 -----DLRMNSHLAEVPEL---PQNLKQLHVETNPLRE  410 (454)
T ss_dssp             -----EEECCC---------------------------
T ss_pred             -----hhhhcccccccccc---cCcCCEEECCCCcCCc
Confidence                 22345566655552   3678899999999875

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.4e-36  Score=332.49  Aligned_cols=347  Identities=18%  Similarity=0.151  Sum_probs=229.4

Q ss_pred             cEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccC
Q 003893          276 TVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEG  355 (788)
Q Consensus       276 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~  355 (788)
                      +.++.+++.++ .+|..+.  ++++.|++++|.++ .++...+.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus        14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            34555555554 3343332  35555666665555 34333334455555555555555555555555555555555555


Q ss_pred             ccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCC
Q 003893          356 NHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLP  435 (788)
Q Consensus       356 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  435 (788)
                      |.+....+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|.++++|+.|++++|.++    
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----  165 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT----  165 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS----
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc----
Confidence            5555444444555555555555555555444555555555555555555555444445555555555555555443    


Q ss_pred             CCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCC
Q 003893          436 SCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQ  515 (788)
Q Consensus       436 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  515 (788)
                                          .++...+.++++|+.|++++|.+.+..+..|..+++|+.|++++|...+..+.......+
T Consensus       166 --------------------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  225 (477)
T 2id5_A          166 --------------------SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN  225 (477)
T ss_dssp             --------------------SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred             --------------------ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence                                234446778888888888888888777778888888888888888776666666666668


Q ss_pred             CCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCce
Q 003893          516 LQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSG  595 (788)
Q Consensus       516 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~  595 (788)
                      |++|++++|.+++..+..+..+.                                                     +|+.
T Consensus       226 L~~L~l~~n~l~~~~~~~~~~l~-----------------------------------------------------~L~~  252 (477)
T 2id5_A          226 LTSLSITHCNLTAVPYLAVRHLV-----------------------------------------------------YLRF  252 (477)
T ss_dssp             CSEEEEESSCCCSCCHHHHTTCT-----------------------------------------------------TCCE
T ss_pred             ccEEECcCCcccccCHHHhcCcc-----------------------------------------------------ccCe
Confidence            88888888888866655555544                                                     7888


Q ss_pred             EECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcC
Q 003893          596 LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNL  675 (788)
Q Consensus       596 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l  675 (788)
                      |++++|.+++..+..|..+++|+.|+|++|++++..|..|..+++|++|++++|++++..+..|..+++|+.|++++|++
T Consensus       253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             EECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred             eECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence            88888888888888888888888888888888888888888888888888888888877777778888888888888888


Q ss_pred             cccCCCCccccCCCCcCCcCCCCCCCCCC
Q 003893          676 SGKIPERAAQFATFNESSYEGNPFLCGPP  704 (788)
Q Consensus       676 ~~~~~~~~~~~~~l~~~~~~~Np~~C~~~  704 (788)
                      ++..+.. .-+.......+.+++..|..+
T Consensus       333 ~c~c~~~-~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          333 ACDCRLL-WVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             ECSGGGH-HHHTTTTSSCCTTCCCBEEES
T ss_pred             cCccchH-hHHhhhhccccCccCceeCCc
Confidence            8754421 122333445667777788654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=8.3e-36  Score=329.38  Aligned_cols=348  Identities=20%  Similarity=0.219  Sum_probs=298.4

Q ss_pred             CEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEcc
Q 003893          251 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALS  330 (788)
Q Consensus       251 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~  330 (788)
                      +.++.+++.++ .+|..+.   +++++|++++|.+++..+..|..+++|++|++++|.++ .++...+.++++|++|+++
T Consensus        14 ~~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~   88 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLR   88 (477)
T ss_dssp             TEEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECC
Confidence            57888888887 7887653   58999999999999888889999999999999999998 5544455679999999999


Q ss_pred             ccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCc
Q 003893          331 NNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPI  410 (788)
Q Consensus       331 ~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~  410 (788)
                      +|.++...+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..
T Consensus        89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence            99999888788889999999999999999888889999999999999999999888889999999999999999999888


Q ss_pred             hhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCc
Q 003893          411 PLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLS  490 (788)
Q Consensus       411 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~  490 (788)
                      +..+..+++|+.|++++|.+.+                        ++...|..+++|++|++++|...+.++.......
T Consensus       169 ~~~l~~l~~L~~L~l~~n~i~~------------------------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  224 (477)
T 2id5_A          169 TEALSHLHGLIVLRLRHLNINA------------------------IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL  224 (477)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCE------------------------ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC
T ss_pred             hhHhcccCCCcEEeCCCCcCcE------------------------eChhhcccCcccceeeCCCCccccccCcccccCc
Confidence            8889999999999999998763                        2333678889999999999988777766666667


Q ss_pred             CCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCccccc
Q 003893          491 QLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQI  570 (788)
Q Consensus       491 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  570 (788)
                      +|++|++++|.++...+..+..+++|++|++++|++++..+..|..+.                                
T Consensus       225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--------------------------------  272 (477)
T 2id5_A          225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL--------------------------------  272 (477)
T ss_dssp             CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT--------------------------------
T ss_pred             cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc--------------------------------
Confidence            999999999999966667899999999999999999988777666554                                


Q ss_pred             ccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcc
Q 003893          571 LESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNK  650 (788)
Q Consensus       571 l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  650 (788)
                                           +|+.|++++|++++..|..|..+++|+.|+|++|++++..+..|..+++|++|++++|+
T Consensus       273 ---------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          273 ---------------------RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             ---------------------TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred             ---------------------cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence                                 89999999999999999999999999999999999998888889999999999999999


Q ss_pred             cCccCch-hhhcCCCCcEEecccCcCcccCCCC
Q 003893          651 LSWKIPY-QLVELNTLAVFSVAYNNLSGKIPER  682 (788)
Q Consensus       651 l~~~~~~-~l~~l~~L~~L~l~~N~l~~~~~~~  682 (788)
                      +....+. ++.  .....+++.++...+..|..
T Consensus       332 l~c~c~~~~~~--~~~~~~~~~~~~~~C~~p~~  362 (477)
T 2id5_A          332 LACDCRLLWVF--RRRWRLNFNRQQPTCATPEF  362 (477)
T ss_dssp             EECSGGGHHHH--TTTTSSCCTTCCCBEEESGG
T ss_pred             ccCccchHhHH--hhhhccccCccCceeCCchH
Confidence            9754322 222  23344556677777766654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.2e-34  Score=316.25  Aligned_cols=347  Identities=27%  Similarity=0.344  Sum_probs=248.1

Q ss_pred             cCCCCCEEEccCCcccCcCccCccCCCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCE
Q 003893          222 NNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQF  301 (788)
Q Consensus       222 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  301 (788)
                      .++++++|++.++.+....  .+..+++|++|++++|.++ .++. + ..+++|++|++++|.+.+..+  +..+++|++
T Consensus        44 ~l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~-~~~~-~-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLT-DITP-L-KNLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             HHHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             HhccccEEecCCCCCccCc--chhhhcCCCEEECCCCccC-Cchh-h-hccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            4567777888777766532  3566777777777777776 3443 3 336777777777777774433  777777777


Q ss_pred             EEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCc
Q 003893          302 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNS  381 (788)
Q Consensus       302 L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  381 (788)
                      |++++|.++ .++.  +..+++|++|++++|.+.+..  .+..+++|++|+++ +.+.+.  ..+..+++|++|++++|.
T Consensus       117 L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~  188 (466)
T 1o6v_A          117 LTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNK  188 (466)
T ss_dssp             EECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSC
T ss_pred             EECCCCCCC-CChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCc
Confidence            777777776 4444  445777777777777766532  35667777777775 333322  226666777777777776


Q ss_pred             CCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCccc
Q 003893          382 LSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGT  461 (788)
Q Consensus       382 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  461 (788)
                      +.+.  ..+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.                       + +  ..
T Consensus       189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-----------------------~-~--~~  238 (466)
T 1o6v_A          189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-----------------------D-I--GT  238 (466)
T ss_dssp             CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-----------------------C-C--GG
T ss_pred             CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc-----------------------c-c--hh
Confidence            6532  235566666666666666655443  455666666666666554                       2 2  15


Q ss_pred             ccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhh
Q 003893          462 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE  541 (788)
Q Consensus       462 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  541 (788)
                      +..+++|++|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|++|++++|++.+..+  +..++   
T Consensus       239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~---  309 (466)
T 1o6v_A          239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLK---  309 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCT---
T ss_pred             hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCC---
Confidence            6778889999999998886544  7888999999999999885443  7888999999999998876544  33322   


Q ss_pred             hccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEe
Q 003893          542 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLN  621 (788)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  621 (788)
                                                                        +|+.|++++|.+++..|  +..+++|+.|+
T Consensus       310 --------------------------------------------------~L~~L~L~~n~l~~~~~--~~~l~~L~~L~  337 (466)
T 1o6v_A          310 --------------------------------------------------NLTYLTLYFNNISDISP--VSSLTKLQRLF  337 (466)
T ss_dssp             --------------------------------------------------TCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred             --------------------------------------------------CCCEEECcCCcCCCchh--hccCccCCEeE
Confidence                                                              78999999999987655  78899999999


Q ss_pred             CCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCccc
Q 003893          622 LSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGK  678 (788)
Q Consensus       622 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  678 (788)
                      +++|++++.  ..+..+++|++|++++|++++..|  +..+++|+.|++++|++++.
T Consensus       338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            999999865  468889999999999999987766  78899999999999999874

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=6.8e-34  Score=312.36  Aligned_cols=346  Identities=26%  Similarity=0.346  Sum_probs=285.6

Q ss_pred             CCCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCcCEEEccCCcCcccCChhhhhcCCCCc
Q 003893          197 NQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLT  276 (788)
Q Consensus       197 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~  276 (788)
                      .+++++.|++.++.+.. ++.  +..+++|++|++++|.+++..+  +..+++|++|++++|.+. .++. + ..+++|+
T Consensus        44 ~l~~l~~L~l~~~~i~~-l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~-~~l~~L~  115 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKS-IDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP-L-ANLTNLT  115 (466)
T ss_dssp             HHHTCCEEECCSSCCCC-CTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG-G-TTCTTCC
T ss_pred             HhccccEEecCCCCCcc-Ccc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh-h-cCCCCCC
Confidence            35789999999999854 554  4789999999999999988654  889999999999999998 4444 4 4489999


Q ss_pred             EEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCc
Q 003893          277 VFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGN  356 (788)
Q Consensus       277 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n  356 (788)
                      +|++++|.+.+. +. +..+++|++|++++|.+. .++.  +..+++|++|+++ +.+....  .+.++++|++|++++|
T Consensus       116 ~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n  187 (466)
T 1o6v_A          116 GLTLFNNQITDI-DP-LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSN  187 (466)
T ss_dssp             EEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSS
T ss_pred             EEECCCCCCCCC-hH-HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecC-CcccCch--hhccCCCCCEEECcCC
Confidence            999999999864 33 899999999999999998 6664  4579999999997 4454433  3788999999999999


Q ss_pred             cCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCC
Q 003893          357 HFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPS  436 (788)
Q Consensus       357 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  436 (788)
                      .+.+.  ..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+.+.   
T Consensus       188 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~---  258 (466)
T 1o6v_A          188 KVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL---  258 (466)
T ss_dssp             CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC---
T ss_pred             cCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccc---
Confidence            98754  348899999999999999986655  77899999999999999864  4678899999999999987632   


Q ss_pred             CCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCC
Q 003893          437 CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQL  516 (788)
Q Consensus       437 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  516 (788)
                                           +  .+..+++|++|++++|.+++..+  +..+++|+.|++++|++.+..+  +..+++|
T Consensus       259 ---------------------~--~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L  311 (466)
T 1o6v_A          259 ---------------------A--PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL  311 (466)
T ss_dssp             ---------------------G--GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred             ---------------------h--hhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC
Confidence                                 1  26667888888888888885443  7788889999999998885443  7788999


Q ss_pred             CEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceE
Q 003893          517 QLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGL  596 (788)
Q Consensus       517 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L  596 (788)
                      ++|++++|++++..|  +..++                                                     +|+.|
T Consensus       312 ~~L~L~~n~l~~~~~--~~~l~-----------------------------------------------------~L~~L  336 (466)
T 1o6v_A          312 TYLTLYFNNISDISP--VSSLT-----------------------------------------------------KLQRL  336 (466)
T ss_dssp             SEEECCSSCCSCCGG--GGGCT-----------------------------------------------------TCCEE
T ss_pred             CEEECcCCcCCCchh--hccCc-----------------------------------------------------cCCEe
Confidence            999999998887655  33322                                                     78999


Q ss_pred             ECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCc
Q 003893          597 DLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW  653 (788)
Q Consensus       597 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  653 (788)
                      ++++|.+++.  ..+..+++|+.|++++|++++..|  +..+++|++|++++|++++
T Consensus       337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            9999998865  468899999999999999998776  8889999999999999986

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=3.2e-34  Score=307.73  Aligned_cols=335  Identities=21%  Similarity=0.196  Sum_probs=198.4

Q ss_pred             CCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCce
Q 003893          272 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWL  351 (788)
Q Consensus       272 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L  351 (788)
                      +++++.|++++|.+....+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+.++++|++|
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            345666666666655443344555666666666666655 4444334445556666666665555555555555555555


Q ss_pred             eccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCC
Q 003893          352 QLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS  431 (788)
Q Consensus       352 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  431 (788)
                      ++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.   .+..+++|+.|++++|.+.
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence            5555555533333345555555555555555554455555555555555555555433   1333455555555555443


Q ss_pred             CCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCccccc
Q 003893          432 GSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC  511 (788)
Q Consensus       432 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  511 (788)
                                                   .+...++|++|++++|.+... +.  ...++|+.|++++|.+++.  ..+.
T Consensus       200 -----------------------------~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~  245 (390)
T 3o6n_A          200 -----------------------------TLAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLL  245 (390)
T ss_dssp             -----------------------------EEECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGG
T ss_pred             -----------------------------ccCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHc
Confidence                                         122334667777777766533 22  2235677777777777642  4566


Q ss_pred             CCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccC
Q 003893          512 RLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPS  591 (788)
Q Consensus       512 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~  591 (788)
                      .+++|++|++++|.+.+..|..+..++                                                     
T Consensus       246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----------------------------------------------------  272 (390)
T 3o6n_A          246 NYPGLVEVDLSYNELEKIMYHPFVKMQ-----------------------------------------------------  272 (390)
T ss_dssp             GCTTCSEEECCSSCCCEEESGGGTTCS-----------------------------------------------------
T ss_pred             CCCCccEEECCCCcCCCcChhHccccc-----------------------------------------------------
Confidence            677777777777777666665555443                                                     


Q ss_pred             CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecc
Q 003893          592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  671 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  671 (788)
                      +|++|++++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|++|++++|+++.. +  +..+++|+.|+++
T Consensus       273 ~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~  347 (390)
T 3o6n_A          273 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLS  347 (390)
T ss_dssp             SCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECC
T ss_pred             cCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcC
Confidence            67777777777764 3445566777777788777777 3455566777778888888877743 2  5566777888888


Q ss_pred             cCcCcccCCCCccccCCCCcCCcCCCCCCCCCC
Q 003893          672 YNNLSGKIPERAAQFATFNESSYEGNPFLCGPP  704 (788)
Q Consensus       672 ~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~  704 (788)
                      +|++.+....  ..+..+....+.+++..|.++
T Consensus       348 ~N~~~~~~~~--~~~~~~~~~~~~~~~~~c~~~  378 (390)
T 3o6n_A          348 HNDWDCNSLR--ALFRNVARPAVDDADQHCKID  378 (390)
T ss_dssp             SSCEEHHHHH--HHTTTCCTTTBCCCCSCCCTT
T ss_pred             CCCccchhHH--HHHHHHHhhcccccCceeccc
Confidence            8877764322  234455556667777777654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.3e-34  Score=314.95  Aligned_cols=361  Identities=18%  Similarity=0.170  Sum_probs=222.3

Q ss_pred             CCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCcCEEEccCCcCcccCChhhhh
Q 003893          191 FPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGD  270 (788)
Q Consensus       191 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  270 (788)
                      .+..+..+++|++|++++|.+++. | . ++.+++|++|++++|.+++.   ++..+++|++|++++|.+++ ++  +. 
T Consensus        34 ~~~~~~~l~~L~~L~Ls~n~l~~~-~-~-l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~-~~--~~-  103 (457)
T 3bz5_A           34 DTISEEQLATLTSLDCHNSSITDM-T-G-IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN-LD--VT-  103 (457)
T ss_dssp             SEEEHHHHTTCCEEECCSSCCCCC-T-T-GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CT-
T ss_pred             cccChhHcCCCCEEEccCCCcccC-h-h-hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCce-ee--cC-
Confidence            334556667777777777777653 3 2 36777777777777777664   26667777777777777763 33  22 


Q ss_pred             cCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCc
Q 003893          271 ILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIW  350 (788)
Q Consensus       271 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~  350 (788)
                      .+++|++|++++|.+++. +  ++.+++|++|++++|.++ .++   +..+++|++|++++|...+..  .+..+++|++
T Consensus       104 ~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~-~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~  174 (457)
T 3bz5_A          104 PLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLT-EID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTT  174 (457)
T ss_dssp             TCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCS-CCC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred             CCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccc-eec---cccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence            366777777777776642 2  666777777777777776 343   334666777777766433222  3455666667


Q ss_pred             eeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcC
Q 003893          351 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNI  430 (788)
Q Consensus       351 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  430 (788)
                      |++++|++.+ ++  +..+++|+.|++++|.+++.   .+..+++|+.|++++|++++ +|  +..+++|+.|++++|++
T Consensus       175 L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l  245 (457)
T 3bz5_A          175 LDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPL  245 (457)
T ss_dssp             EECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCC
T ss_pred             EECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcC
Confidence            7776666664 23  55666666666666666643   25556666666666666665 23  55566666666666666


Q ss_pred             CCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccc
Q 003893          431 SGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQL  510 (788)
Q Consensus       431 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  510 (788)
                      ++..  ...+++|+.|+++.|               +|+.|++++|.+.+.+|  +..+++|+.|++++|...+.+|.  
T Consensus       246 ~~~~--~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~--  304 (457)
T 3bz5_A          246 TELD--VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC--  304 (457)
T ss_dssp             SCCC--CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC--
T ss_pred             CCcC--HHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc--
Confidence            5432  112333343333222               23334444444333322  23344444444444443333331  


Q ss_pred             cCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCcc
Q 003893          511 CRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVP  590 (788)
Q Consensus       511 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  590 (788)
                       ..++|+.|++++|                                                                  
T Consensus       305 -~~~~L~~L~l~~~------------------------------------------------------------------  317 (457)
T 3bz5_A          305 -QAAGITELDLSQN------------------------------------------------------------------  317 (457)
T ss_dssp             -TTCCCSCCCCTTC------------------------------------------------------------------
T ss_pred             -CCCcceEechhhc------------------------------------------------------------------
Confidence             2233333333332                                                                  


Q ss_pred             CCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEec
Q 003893          591 SLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSV  670 (788)
Q Consensus       591 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l  670 (788)
                      ++|++|++++|++++. +  ++.+++|+.|++++|++++        ++.|..|++++|.+.+.     ..+..|..+++
T Consensus       318 ~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l  381 (457)
T 3bz5_A          318 PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETL  381 (457)
T ss_dssp             TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCC
T ss_pred             ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCcccc
Confidence            2799999999999975 3  8899999999999999985        35678889999999875     24456788999


Q ss_pred             ccCcCcccCCCCc
Q 003893          671 AYNNLSGKIPERA  683 (788)
Q Consensus       671 ~~N~l~~~~~~~~  683 (788)
                      ++|+++|.+|..+
T Consensus       382 ~~N~l~g~ip~~~  394 (457)
T 3bz5_A          382 TNNSLTIAVSPDL  394 (457)
T ss_dssp             BTTBEEEECCTTC
T ss_pred             ccCcEEEEcChhH
Confidence            9999999998754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=3.4e-33  Score=316.17  Aligned_cols=335  Identities=21%  Similarity=0.192  Sum_probs=216.4

Q ss_pred             CCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCce
Q 003893          272 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWL  351 (788)
Q Consensus       272 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L  351 (788)
                      +++++.+++++|.+....+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..|.++++|++|
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            345666666666665444444556666666666666665 4443333455666666666666665555555556666666


Q ss_pred             eccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCC
Q 003893          352 QLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS  431 (788)
Q Consensus       352 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  431 (788)
                      ++++|.+.+..+..|..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..   +..+++|+.|++++|.+.
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence            66666665444444555666666666666665555555555566666666665555432   333455555555555443


Q ss_pred             CCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCccccc
Q 003893          432 GSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC  511 (788)
Q Consensus       432 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  511 (788)
                                                   .+...++|++|++++|.+....+. +  .++|+.|++++|.+++  +..+.
T Consensus       206 -----------------------------~l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~  251 (597)
T 3oja_B          206 -----------------------------TLAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLL  251 (597)
T ss_dssp             -----------------------------EEECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGG
T ss_pred             -----------------------------cccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--Chhhc
Confidence                                         233345677778877777633221 1  3577888888887774  35677


Q ss_pred             CCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccC
Q 003893          512 RLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPS  591 (788)
Q Consensus       512 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~  591 (788)
                      .+++|++|++++|.+.+..|..+..++                                                     
T Consensus       252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----------------------------------------------------  278 (597)
T 3oja_B          252 NYPGLVEVDLSYNELEKIMYHPFVKMQ-----------------------------------------------------  278 (597)
T ss_dssp             GCTTCSEEECCSSCCCEEESGGGTTCS-----------------------------------------------------
T ss_pred             cCCCCCEEECCCCccCCCCHHHhcCcc-----------------------------------------------------
Confidence            788888888888888777776665554                                                     


Q ss_pred             CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecc
Q 003893          592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  671 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  671 (788)
                      +|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|++|++++|++++..   +..+++|+.|+++
T Consensus       279 ~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~  353 (597)
T 3oja_B          279 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLS  353 (597)
T ss_dssp             SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECC
T ss_pred             CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEee
Confidence            78888888888875 3556677888888888888888 46667778888888888888887542   5567888889999


Q ss_pred             cCcCcccCCCCccccCCCCcCCcCCCCCCCCCC
Q 003893          672 YNNLSGKIPERAAQFATFNESSYEGNPFLCGPP  704 (788)
Q Consensus       672 ~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~  704 (788)
                      +|+++|....  ..+..+....+.+++..|+.+
T Consensus       354 ~N~~~~~~~~--~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          354 HNDWDCNSLR--ALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             SSCEEHHHHH--HHTTTCCTTTBCCCCCCCCTT
T ss_pred             CCCCCChhHH--HHHHHHhhhccccccccCCcc
Confidence            9988875433  345556666777888888753

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3.2e-32  Score=295.97  Aligned_cols=349  Identities=19%  Similarity=0.162  Sum_probs=242.5

Q ss_pred             hcCCCCCEEEccCCcccCcCccCccCCCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCC
Q 003893          221 ENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQ  300 (788)
Q Consensus       221 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  300 (788)
                      +++++|++|++++|.+++..  .+..+++|++|++++|.+++ +|  +. .+++|++|++++|.+++. +  ++.+++|+
T Consensus        39 ~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~-~~--~~-~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~  109 (457)
T 3bz5_A           39 EQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITT-LD--LS-QNTNLTYLACDSNKLTNL-D--VTPLTKLT  109 (457)
T ss_dssp             HHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSC-CC--CT-TCTTCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred             hHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCe-Ec--cc-cCCCCCEEECcCCCCcee-e--cCCCCcCC
Confidence            57788888888888877652  56777888888888888774 44  33 367888888888887753 2  77788888


Q ss_pred             EEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccC
Q 003893          301 FLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNN  380 (788)
Q Consensus       301 ~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  380 (788)
                      +|++++|.++ .+|   +..+++|++|++++|.+++.   .+..+++|++|++++|...+..  .+..+++|++|++++|
T Consensus       110 ~L~L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n  180 (457)
T 3bz5_A          110 YLNCDTNKLT-KLD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN  180 (457)
T ss_dssp             EEECCSSCCS-CCC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred             EEECCCCcCC-eec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence            8888888877 454   34577888888888887764   2566777888888887544343  3667777888888888


Q ss_pred             cCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcc
Q 003893          381 SLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEG  460 (788)
Q Consensus       381 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  460 (788)
                      .+++ +|  +..+++|+.|++++|.+++.   .+..+++|+.|++++|++++. | ...+++|+.|++++|.+.+. +  
T Consensus       181 ~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p-~~~l~~L~~L~l~~N~l~~~-~--  249 (457)
T 3bz5_A          181 KITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D-VTPLTQLTYFDCSVNPLTEL-D--  249 (457)
T ss_dssp             CCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C-CTTCTTCSEEECCSSCCSCC-C--
T ss_pred             ccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C-ccccCCCCEEEeeCCcCCCc-C--
Confidence            7775 33  66777777777777777754   366677777777777777652 2 33455666666666655442 1  


Q ss_pred             cccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchh
Q 003893          461 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLH  540 (788)
Q Consensus       461 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~  540 (788)
                       ...+++|+.|++++|              +|+.|++++|.+.+.+|  +..+++|+.|++++|+..+.+|...      
T Consensus       250 -~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~------  306 (457)
T 3bz5_A          250 -VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQA------  306 (457)
T ss_dssp             -CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTT------
T ss_pred             -HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCC------
Confidence             334455555555543              34556666666555544  4567788888888877654443210      


Q ss_pred             hhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeE
Q 003893          541 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTL  620 (788)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  620 (788)
                                                                        +.|+.|++++             +++|+.|
T Consensus       307 --------------------------------------------------~~L~~L~l~~-------------~~~L~~L  323 (457)
T 3bz5_A          307 --------------------------------------------------AGITELDLSQ-------------NPKLVYL  323 (457)
T ss_dssp             --------------------------------------------------CCCSCCCCTT-------------CTTCCEE
T ss_pred             --------------------------------------------------CcceEechhh-------------cccCCEE
Confidence                                                              1455555544             4789999


Q ss_pred             eCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCC
Q 003893          621 NLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFL  700 (788)
Q Consensus       621 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~  700 (788)
                      ++++|++++. +  ++.+++|++|++++|++++        ++.|..|++++|.++|.     .++..+..+++.+|.+.
T Consensus       324 ~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~  387 (457)
T 3bz5_A          324 YLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLT  387 (457)
T ss_dssp             ECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEE
T ss_pred             ECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEE
Confidence            9999999985 3  8899999999999999985        25677788999999886     35566777788887664

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.8e-32  Score=294.16  Aligned_cols=315  Identities=20%  Similarity=0.184  Sum_probs=270.3

Q ss_pred             CCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcE
Q 003893          295 NMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQG  374 (788)
Q Consensus       295 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  374 (788)
                      .++++++|+++++.++ .+|..++..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus        43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            4688999999999998 899888888999999999999999888888899999999999999999888888999999999


Q ss_pred             EEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccc
Q 003893          375 LFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLH  454 (788)
Q Consensus       375 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~  454 (788)
                      |++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.                     
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------  180 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---------------------  180 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---------------------
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---------------------
Confidence            99999999865556678899999999999999888888888899999999999887521                     


Q ss_pred             cccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccc
Q 003893          455 GQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCF  534 (788)
Q Consensus       455 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  534 (788)
                            .+..+++|++|++++|.+++     +...++|++|++++|.+... +..  ..++|++|++++|.+++.  ..+
T Consensus       181 ------~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l  244 (390)
T 3o6n_A          181 ------DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWL  244 (390)
T ss_dssp             ------CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGG
T ss_pred             ------ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHH
Confidence                  24557889999999998863     34457899999999999854 332  357999999999999864  233


Q ss_pred             cccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCccccccc
Q 003893          535 DNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNL  614 (788)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  614 (788)
                      ...+                                                     +|++|++++|.+++..|..|..+
T Consensus       245 ~~l~-----------------------------------------------------~L~~L~Ls~n~l~~~~~~~~~~l  271 (390)
T 3o6n_A          245 LNYP-----------------------------------------------------GLVEVDLSYNELEKIMYHPFVKM  271 (390)
T ss_dssp             GGCT-----------------------------------------------------TCSEEECCSSCCCEEESGGGTTC
T ss_pred             cCCC-----------------------------------------------------CccEEECCCCcCCCcChhHcccc
Confidence            3332                                                     89999999999999989999999


Q ss_pred             ccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCc
Q 003893          615 TKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSY  694 (788)
Q Consensus       615 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~  694 (788)
                      ++|+.|+|++|++++ +|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|+++...   +..+++++.+++
T Consensus       272 ~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l  346 (390)
T 3o6n_A          272 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTL  346 (390)
T ss_dssp             SSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEEC
T ss_pred             ccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEc
Confidence            999999999999995 5666788999999999999999 57778889999999999999998653   467888999999


Q ss_pred             CCCCCCCCCCC
Q 003893          695 EGNPFLCGPPL  705 (788)
Q Consensus       695 ~~Np~~C~~~~  705 (788)
                      .+||+.|+|..
T Consensus       347 ~~N~~~~~~~~  357 (390)
T 3o6n_A          347 SHNDWDCNSLR  357 (390)
T ss_dssp             CSSCEEHHHHH
T ss_pred             CCCCccchhHH
Confidence            99999998654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.1e-31  Score=283.38  Aligned_cols=285  Identities=23%  Similarity=0.320  Sum_probs=135.1

Q ss_pred             ccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCC
Q 003893          293 FGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSL  372 (788)
Q Consensus       293 ~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  372 (788)
                      +..+++|++|++++|.++ .++.  +..+++|++|++++|.++..  ..+.++++|++|++++|.+.+.. . +..+++|
T Consensus        62 ~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~-~-~~~l~~L  134 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDIS-P-LANLTKM  134 (347)
T ss_dssp             GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCG-G-GTTCTTC
T ss_pred             hhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCch-h-hccCCce
Confidence            333444444444444443 2322  22344444444444444332  12334444444444444444221 1 4444455


Q ss_pred             cEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcc
Q 003893          373 QGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNM  452 (788)
Q Consensus       373 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~  452 (788)
                      ++|++++|...... ..+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+.                   
T Consensus       135 ~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-------------------  192 (347)
T 4fmz_A          135 YSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-------------------  192 (347)
T ss_dssp             CEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-------------------
T ss_pred             eEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-------------------
Confidence            55555554333222 224445555555555555443322  44555555555555554311                   


Q ss_pred             cccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcc
Q 003893          453 LHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPS  532 (788)
Q Consensus       453 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  532 (788)
                           +  .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.+++.  .
T Consensus       193 -----~--~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~  259 (347)
T 4fmz_A          193 -----S--PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--N  259 (347)
T ss_dssp             -----G--GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--G
T ss_pred             -----c--cccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--h
Confidence                 1  13444455555555555543222  4445555555555555543222  45555555555555555432  1


Q ss_pred             cccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCccccc
Q 003893          533 CFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIG  612 (788)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  612 (788)
                      .+...                                                     ++|+.|++++|.+++.  ..+.
T Consensus       260 ~~~~l-----------------------------------------------------~~L~~L~l~~n~l~~~--~~~~  284 (347)
T 4fmz_A          260 AVKDL-----------------------------------------------------TKLKMLNVGSNQISDI--SVLN  284 (347)
T ss_dssp             GGTTC-----------------------------------------------------TTCCEEECCSSCCCCC--GGGG
T ss_pred             hHhcC-----------------------------------------------------CCcCEEEccCCccCCC--hhhc
Confidence            11111                                                     1455555555555533  2355


Q ss_pred             ccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCc
Q 003893          613 NLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS  676 (788)
Q Consensus       613 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  676 (788)
                      .+++|+.|++++|++++..|..|..+++|++|++++|++++..|  +..+++|+.|++++|+++
T Consensus       285 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            56666666666666665555556666666666666666664433  555666666666666554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.3e-31  Score=280.94  Aligned_cols=305  Identities=26%  Similarity=0.349  Sum_probs=207.6

Q ss_pred             CCCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCc
Q 003893          246 SHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLR  325 (788)
Q Consensus       246 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~  325 (788)
                      .+++|++|+++++.+. .++. + ..+++|++|++++|.+++. +. +..+++|++|++++|.++ .++.  +..+++|+
T Consensus        42 ~l~~L~~L~l~~~~i~-~~~~-~-~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~  113 (347)
T 4fmz_A           42 ELESITKLVVAGEKVA-SIQG-I-EYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKIT-DISA--LQNLTNLR  113 (347)
T ss_dssp             HHTTCSEEECCSSCCC-CCTT-G-GGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCS
T ss_pred             hcccccEEEEeCCccc-cchh-h-hhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCccc-CchH--HcCCCcCC
Confidence            3445555555555554 3332 2 2255666666666665532 22 566666666666666665 4442  33466666


Q ss_pred             EEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCe
Q 003893          326 SLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNH  405 (788)
Q Consensus       326 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  405 (788)
                      +|++++|.+.+..+  +..+++|++|++++|...... ..+..+++|++|++++|.+.+..+  +..+++|++|++++|.
T Consensus       114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~  188 (347)
T 4fmz_A          114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ  188 (347)
T ss_dssp             EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred             EEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence            66666666654433  556667777777776544332 336777777777777777764433  6677788888888887


Q ss_pred             eccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCcc
Q 003893          406 IEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDR  485 (788)
Q Consensus       406 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~  485 (788)
                      +.+..+  +..+++|+.|++++|.+.+.                        +  .+..+++|++|++++|.+++..+  
T Consensus       189 l~~~~~--~~~l~~L~~L~l~~n~l~~~------------------------~--~~~~~~~L~~L~l~~n~l~~~~~--  238 (347)
T 4fmz_A          189 IEDISP--LASLTSLHYFTAYVNQITDI------------------------T--PVANMTRLNSLKIGNNKITDLSP--  238 (347)
T ss_dssp             CCCCGG--GGGCTTCCEEECCSSCCCCC------------------------G--GGGGCTTCCEEECCSSCCCCCGG--
T ss_pred             cccccc--ccCCCccceeecccCCCCCC------------------------c--hhhcCCcCCEEEccCCccCCCcc--
Confidence            765443  67788888888888876521                        1  25667778888888888775433  


Q ss_pred             ccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccC
Q 003893          486 VDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVD  565 (788)
Q Consensus       486 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  565 (788)
                      +..+++|++|++++|.+++.  ..+..+++|++|++++|++++. + .+...                            
T Consensus       239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~~~~l----------------------------  286 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-S-VLNNL----------------------------  286 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGGGC----------------------------
T ss_pred             hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-h-hhcCC----------------------------
Confidence            77788888888888888743  4577888888888888888754 1 23222                            


Q ss_pred             cccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeee
Q 003893          566 PKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLD  645 (788)
Q Consensus       566 ~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  645 (788)
                                               ++|+.|++++|.+++..+..+..+++|+.|++++|++++..|  +..+++|++|+
T Consensus       287 -------------------------~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~  339 (347)
T 4fmz_A          287 -------------------------SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSAD  339 (347)
T ss_dssp             -------------------------TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEES
T ss_pred             -------------------------CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceee
Confidence                                     278999999999988888889999999999999999997666  88899999999


Q ss_pred             CCCcccC
Q 003893          646 LSYNKLS  652 (788)
Q Consensus       646 Ls~N~l~  652 (788)
                      +++|+|+
T Consensus       340 l~~N~i~  346 (347)
T 4fmz_A          340 FANQVIK  346 (347)
T ss_dssp             SSCC---
T ss_pred             hhhhccc
Confidence            9999886

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.8e-32  Score=283.58  Aligned_cols=258  Identities=33%  Similarity=0.527  Sum_probs=221.5

Q ss_pred             CCCcEEEcccCcCCC--CCCccccCCCCccEEEccC-CeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEE
Q 003893          370 SSLQGLFLSNNSLSG--KIPRWLGNLTVLRHIIMPK-NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQV  446 (788)
Q Consensus       370 ~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L  446 (788)
                      .+++.|++++|.+.+  .+|..+..+++|++|++++ |.+.+..|..+..+++|++|++++|.+.+              
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--------------  115 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG--------------  115 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE--------------
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC--------------
Confidence            467777777777776  6677777777777777774 77777777777777777777777776653              


Q ss_pred             EccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCC-CCCEEEccCCc
Q 003893          447 HLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLN-QLQLLDLSNNN  525 (788)
Q Consensus       447 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~  525 (788)
                               .+|. .+.++++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..++ +|++|++++|+
T Consensus       116 ---------~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          116 ---------AIPD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             ---------ECCG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             ---------cCCH-HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence                     3343 678888999999999999888888999999999999999999888899999988 99999999999


Q ss_pred             CCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccc
Q 003893          526 LHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIG  605 (788)
Q Consensus       526 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  605 (788)
                      +++..|..+...                                                      .|+.|++++|.+++
T Consensus       186 l~~~~~~~~~~l------------------------------------------------------~L~~L~Ls~N~l~~  211 (313)
T 1ogq_A          186 LTGKIPPTFANL------------------------------------------------------NLAFVDLSRNMLEG  211 (313)
T ss_dssp             EEEECCGGGGGC------------------------------------------------------CCSEEECCSSEEEE
T ss_pred             eeccCChHHhCC------------------------------------------------------cccEEECcCCcccC
Confidence            988877766543                                                      38899999999999


Q ss_pred             cCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccc
Q 003893          606 HIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQ  685 (788)
Q Consensus       606 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~  685 (788)
                      ..|..+..+++|+.|+|++|++++..|. +..+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|.. .+
T Consensus       212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~  289 (313)
T 1ogq_A          212 DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN  289 (313)
T ss_dssp             CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TT
T ss_pred             cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cc
Confidence            9999999999999999999999976665 888999999999999999999999999999999999999999999987 88


Q ss_pred             cCCCCcCCcCCCCCCCCCCCCC
Q 003893          686 FATFNESSYEGNPFLCGPPLPI  707 (788)
Q Consensus       686 ~~~l~~~~~~~Np~~C~~~~~~  707 (788)
                      +++++.+++.+||+.|+.+...
T Consensus       290 l~~L~~l~l~~N~~lc~~p~~~  311 (313)
T 1ogq_A          290 LQRFDVSAYANNKCLCGSPLPA  311 (313)
T ss_dssp             GGGSCGGGTCSSSEEESTTSSC
T ss_pred             ccccChHHhcCCCCccCCCCCC
Confidence            9999999999999999977654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=9.3e-32  Score=304.40  Aligned_cols=314  Identities=20%  Similarity=0.190  Sum_probs=271.5

Q ss_pred             CCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcE
Q 003893          295 NMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQG  374 (788)
Q Consensus       295 ~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  374 (788)
                      .+.+++.+++++|.+. .+|..++.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++
T Consensus        49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            3578999999999998 889888888999999999999999888888999999999999999999888888899999999


Q ss_pred             EEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccc
Q 003893          375 LFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLH  454 (788)
Q Consensus       375 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~  454 (788)
                      |++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+.                     
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------------  186 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---------------------  186 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---------------------
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---------------------
Confidence            99999999976666678999999999999999988888899999999999999887621                     


Q ss_pred             cccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccc
Q 003893          455 GQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCF  534 (788)
Q Consensus       455 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  534 (788)
                            .+..+++|+.|++++|.+.+     +...++|+.|++++|.+....+. +  .++|+.|++++|.+++.  ..+
T Consensus       187 ------~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~~--~~l  250 (597)
T 3oja_B          187 ------DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTDT--AWL  250 (597)
T ss_dssp             ------CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCCC--GGG
T ss_pred             ------ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCCC--hhh
Confidence                  24557789999999998873     34567899999999999854332 2  36899999999999863  333


Q ss_pred             cccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCccccccc
Q 003893          535 DNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNL  614 (788)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  614 (788)
                      ..++                                                     +|+.|++++|.+++..|..|..+
T Consensus       251 ~~l~-----------------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l  277 (597)
T 3oja_B          251 LNYP-----------------------------------------------------GLVEVDLSYNELEKIMYHPFVKM  277 (597)
T ss_dssp             GGCT-----------------------------------------------------TCSEEECCSSCCCEEESGGGTTC
T ss_pred             ccCC-----------------------------------------------------CCCEEECCCCccCCCCHHHhcCc
Confidence            3333                                                     89999999999999999999999


Q ss_pred             ccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCc
Q 003893          615 TKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSY  694 (788)
Q Consensus       615 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~  694 (788)
                      ++|+.|+|++|++++ +|..+..+++|++|+|++|.++ .+|..+..+++|+.|++++|++++..   +..++.+..+++
T Consensus       278 ~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l  352 (597)
T 3oja_B          278 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTL  352 (597)
T ss_dssp             SSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEEC
T ss_pred             cCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEe
Confidence            999999999999996 5677788999999999999999 67888899999999999999998763   456788999999


Q ss_pred             CCCCCCCCCC
Q 003893          695 EGNPFLCGPP  704 (788)
Q Consensus       695 ~~Np~~C~~~  704 (788)
                      .+|||.|+|.
T Consensus       353 ~~N~~~~~~~  362 (597)
T 3oja_B          353 SHNDWDCNSL  362 (597)
T ss_dssp             CSSCEEHHHH
T ss_pred             eCCCCCChhH
Confidence            9999999864

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=9.2e-30  Score=266.27  Aligned_cols=291  Identities=23%  Similarity=0.291  Sum_probs=219.0

Q ss_pred             CCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEc
Q 003893          298 FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFL  377 (788)
Q Consensus       298 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  377 (788)
                      +++.++++++.++ .+|..+   .+++++|++++|.+++..+..+.++++|++|++++|.+.+..|..|..+++|++|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            5667777777666 666544   256777777777777766666777788888888888877666777888888888888


Q ss_pred             ccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCccccccc
Q 003893          378 SNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQL  457 (788)
Q Consensus       378 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  457 (788)
                      ++|.++ .+|..+.  ++|++|++++|.+.+..+..+.++++|+.|++++|.+...                      ..
T Consensus       108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~  162 (330)
T 1xku_A          108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS----------------------GI  162 (330)
T ss_dssp             CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----------------------GB
T ss_pred             CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc----------------------Cc
Confidence            888877 3444333  6788888888888877777888888888888888877521                      12


Q ss_pred             CcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCccccccc
Q 003893          458 KEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNT  537 (788)
Q Consensus       458 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  537 (788)
                      ....+.++++|++|++++|.++. +|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+
T Consensus       163 ~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  239 (330)
T 1xku_A          163 ENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT  239 (330)
T ss_dssp             CTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred             ChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence            22367778888888888888874 444433  788899999998887778888888899999999998887766666554


Q ss_pred             chhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccC
Q 003893          538 TLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKI  617 (788)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  617 (788)
                      +                                                     +|++|++++|.++ .+|..+..+++|
T Consensus       240 ~-----------------------------------------------------~L~~L~L~~N~l~-~lp~~l~~l~~L  265 (330)
T 1xku_A          240 P-----------------------------------------------------HLRELHLNNNKLV-KVPGGLADHKYI  265 (330)
T ss_dssp             T-----------------------------------------------------TCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred             C-----------------------------------------------------CCCEEECCCCcCc-cCChhhccCCCc
Confidence            4                                                     7888899888888 667778888999


Q ss_pred             CeEeCCCCCCCCCCCcccCC------CCCCCeeeCCCcccCc--cCchhhhcCCCCcEEecccCc
Q 003893          618 QTLNLSHNNLAGPIPSTFSN------LRNIESLDLSYNKLSW--KIPYQLVELNTLAVFSVAYNN  674 (788)
Q Consensus       618 ~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~l~~N~  674 (788)
                      ++|++++|++++..+..|..      .++|+.|++++|++..  ..|..|..+.+++.+++++|+
T Consensus       266 ~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            99999999998877777754      3778889999998863  556788888888888888874

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=5.2e-30  Score=268.25  Aligned_cols=290  Identities=23%  Similarity=0.278  Sum_probs=204.3

Q ss_pred             CCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEc
Q 003893          298 FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFL  377 (788)
Q Consensus       298 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  377 (788)
                      +++.++++++.++ .+|..++   ++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..|..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            5667777777766 6665542   56777777777777666666777777777777777777666777777777777777


Q ss_pred             ccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCccccccc
Q 003893          378 SNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQL  457 (788)
Q Consensus       378 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  457 (788)
                      ++|.+. .+|..+.  ++|++|++++|.+.+..+..+.++++|+.|++++|.+...                      ..
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~  164 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS----------------------GF  164 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG----------------------GS
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC----------------------CC
Confidence            777776 3443333  6777788887777766666677778888888887776421                      01


Q ss_pred             CcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCccccccc
Q 003893          458 KEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNT  537 (788)
Q Consensus       458 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  537 (788)
                      ....+..+ +|++|++++|.+++ +|..+.  ++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..+
T Consensus       165 ~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l  240 (332)
T 2ft3_A          165 EPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL  240 (332)
T ss_dssp             CTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred             CcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence            11244444 67777777777774 443332  677888888888776666777778888888888888877666555544


Q ss_pred             chhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccC
Q 003893          538 TLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKI  617 (788)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  617 (788)
                      .                                                     +|++|++++|+++ .+|..+..+++|
T Consensus       241 ~-----------------------------------------------------~L~~L~L~~N~l~-~lp~~l~~l~~L  266 (332)
T 2ft3_A          241 P-----------------------------------------------------TLRELHLDNNKLS-RVPAGLPDLKLL  266 (332)
T ss_dssp             T-----------------------------------------------------TCCEEECCSSCCC-BCCTTGGGCTTC
T ss_pred             C-----------------------------------------------------CCCEEECCCCcCe-ecChhhhcCccC
Confidence            4                                                     6788888888887 566778888888


Q ss_pred             CeEeCCCCCCCCCCCcccCCC------CCCCeeeCCCcccC--ccCchhhhcCCCCcEEecccCc
Q 003893          618 QTLNLSHNNLAGPIPSTFSNL------RNIESLDLSYNKLS--WKIPYQLVELNTLAVFSVAYNN  674 (788)
Q Consensus       618 ~~L~Ls~N~l~~~~~~~~~~l------~~L~~L~Ls~N~l~--~~~~~~l~~l~~L~~L~l~~N~  674 (788)
                      +.|++++|++++..+..|...      ++|+.|++++|++.  ...|..|..+++|+.+++++|+
T Consensus       267 ~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          267 QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            888888888887777666543      56888888888887  5667778888888888888874

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=2.6e-33  Score=308.47  Aligned_cols=363  Identities=19%  Similarity=0.139  Sum_probs=241.9

Q ss_pred             CCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCC----CCCccccCCCCCCEEEccCCcCCCccchHHhhCCC-
Q 003893          248 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDG----SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCV-  322 (788)
Q Consensus       248 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~-  322 (788)
                      ++|++|++++|.+++.....++..+++|++|++++|.++.    .++..+..+++|++|++++|.+.+..+..++..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            4678888888888644444445568899999999998874    23566778899999999999887555556665566 


Q ss_pred             ---CCcEEEccccccCcc----ccccccCCCccCceeccCccCcccCCcc-----CCCCCCCcEEEcccCcCCCCC----
Q 003893          323 ---SLRSLALSNNNLEGH----MFSRNFNLTNLIWLQLEGNHFVGEIPQS-----LSKCSSLQGLFLSNNSLSGKI----  386 (788)
Q Consensus       323 ---~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~----  386 (788)
                         +|++|++++|.++..    .+..+..+++|++|++++|.+....+..     ....++|++|++++|.+++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               699999999888743    3566777888888888888876433322     223567888888888777533    


Q ss_pred             CccccCCCCccEEEccCCeeccCchhhhh-----cccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCccc
Q 003893          387 PRWLGNLTVLRHIIMPKNHIEGPIPLEFC-----QLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGT  461 (788)
Q Consensus       387 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  461 (788)
                      +..+..+++|++|++++|.+....+..+.     ..++|++|++++|.++.....                   .++. .
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-------------------~l~~-~  222 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR-------------------DLCG-I  222 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH-------------------HHHH-H
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH-------------------HHHH-H
Confidence            34455567888888888877654444433     245777777777766531100                   1122 4


Q ss_pred             ccccccccEEeCCCCccCCCC-----CccccCCcCCcEEEccCccCccc----CcccccCCCCCCEEEccCCcCCccCcc
Q 003893          462 FFNCLTLMILDLSYNHLNGNI-----PDRVDGLSQLSYLILAHNNLEGE----VPIQLCRLNQLQLLDLSNNNLHGHIPS  532 (788)
Q Consensus       462 ~~~~~~L~~L~l~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~  532 (788)
                      +..+++|++|++++|.+++..     +..+..+++|++|++++|.++..    ++..+..+++|++|++++|.+.+..+.
T Consensus       223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  302 (461)
T 1z7x_W          223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR  302 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence            556677778888777765422     12223467788888888877743    455566678888888888877644333


Q ss_pred             cccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCccccc----Cc
Q 003893          533 CFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGH----IP  608 (788)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~  608 (788)
                      .+...-                                                ...+++|++|++++|.+++.    ++
T Consensus       303 ~l~~~l------------------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~  334 (461)
T 1z7x_W          303 LLCETL------------------------------------------------LEPGCQLESLWVKSCSFTAACCSHFS  334 (461)
T ss_dssp             HHHHHH------------------------------------------------TSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             HHHHHh------------------------------------------------ccCCccceeeEcCCCCCchHHHHHHH
Confidence            322110                                                00113678888888887754    34


Q ss_pred             ccccccccCCeEeCCCCCCCCCCCcccCC-----CCCCCeeeCCCcccCc----cCchhhhcCCCCcEEecccCcCccc
Q 003893          609 PQIGNLTKIQTLNLSHNNLAGPIPSTFSN-----LRNIESLDLSYNKLSW----KIPYQLVELNTLAVFSVAYNNLSGK  678 (788)
Q Consensus       609 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~~~~~l~~l~~L~~L~l~~N~l~~~  678 (788)
                      ..+..+++|++|++++|++++..+..+..     .++|++|++++|+++.    .+|..+..+++|++|++++|++++.
T Consensus       335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            55666788888888888776544433332     5688888888888875    5677777788888888888887653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.1e-29  Score=265.74  Aligned_cols=249  Identities=26%  Similarity=0.294  Sum_probs=130.9

Q ss_pred             CcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEE
Q 003893          249 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLA  328 (788)
Q Consensus       249 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~  328 (788)
                      .++.++++++.++ .+|..+.   +++++|++++|.+.+..+..|..+++|++|++++|.++ .++...+.++++|++|+
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEE
T ss_pred             cCCEEECCCCCcc-ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEE
Confidence            4556666666554 4554332   35556666665555444455555555555555555555 33222223455555555


Q ss_pred             ccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeecc
Q 003893          329 LSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEG  408 (788)
Q Consensus       329 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~  408 (788)
                      +++|.++..                         |..+.  ++|++|++++|.+....+..+..+++|++|++++|.+..
T Consensus       109 L~~n~l~~l-------------------------~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~  161 (332)
T 2ft3_A          109 ISKNHLVEI-------------------------PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN  161 (332)
T ss_dssp             CCSSCCCSC-------------------------CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG
T ss_pred             CCCCcCCcc-------------------------Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc
Confidence            555554432                         22222  445555555555554444445555555555555555532


Q ss_pred             --CchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccc
Q 003893          409 --PIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRV  486 (788)
Q Consensus       409 --~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~  486 (788)
                        ..+..+..+ +|+.|++++|.+++......  ++|++|++++|.+.+..+ ..+..+++|++|++++|++++..+..+
T Consensus       162 ~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~  237 (332)
T 2ft3_A          162 SGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIEL-EDLLRYSKLYRLGLGHNQIRMIENGSL  237 (332)
T ss_dssp             GGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCT-TSSTTCTTCSCCBCCSSCCCCCCTTGG
T ss_pred             CCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcCCcCChhHh
Confidence              344444444 56666666665553221111  334444444444332222 255666666666666666666555566


Q ss_pred             cCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccc
Q 003893          487 DGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCF  534 (788)
Q Consensus       487 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  534 (788)
                      ..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|
T Consensus       238 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~  284 (332)
T 2ft3_A          238 SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDF  284 (332)
T ss_dssp             GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred             hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHc
Confidence            66666666666666666 455556666666666666666665554444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=3.5e-29  Score=261.87  Aligned_cols=288  Identities=19%  Similarity=0.231  Sum_probs=170.2

Q ss_pred             ccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEecc
Q 003893          347 NLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDIS  426 (788)
Q Consensus       347 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  426 (788)
                      +++.++++++.+. .+|..+.  +.++.|++++|.+++..+..+.++++|++|++++|.+.+..|..|..+++|++|+++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            3444444444444 2333222  345555555555554444455555555555555555555555555556666666666


Q ss_pred             CCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCC--CCCccccCCcCCcEEEccCccCcc
Q 003893          427 DNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG--NIPDRVDGLSQLSYLILAHNNLEG  504 (788)
Q Consensus       427 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~  504 (788)
                      +|.++......+  ++|++|++++|.+.+ ++...+.++++|++|++++|.+..  ..+..+.++++|++|++++|.++.
T Consensus       109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (330)
T 1xku_A          109 KNQLKELPEKMP--KTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  185 (330)
T ss_dssp             SSCCSBCCSSCC--TTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CCcCCccChhhc--ccccEEECCCCcccc-cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence            665542222111  344444444444432 333356777777777777777753  455667777777777777777763


Q ss_pred             cCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceec
Q 003893          505 EVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYT  584 (788)
Q Consensus       505 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  584 (788)
                       +|..+.  ++|++|++++|++++..+..+..+.                                              
T Consensus       186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~----------------------------------------------  216 (330)
T 1xku_A          186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLN----------------------------------------------  216 (330)
T ss_dssp             -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCT----------------------------------------------
T ss_pred             -CCcccc--ccCCEEECCCCcCCccCHHHhcCCC----------------------------------------------
Confidence             343332  6777777777777766665555444                                              


Q ss_pred             ccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhc---
Q 003893          585 YQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVE---  661 (788)
Q Consensus       585 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~---  661 (788)
                             +|++|++++|.+++..+..+..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..|..   
T Consensus       217 -------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~  288 (330)
T 1xku_A          217 -------NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY  288 (330)
T ss_dssp             -------TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSC
T ss_pred             -------CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccc
Confidence                   6777777777777666666777777777777777777 45666777777777777777777655555533   


Q ss_pred             ---CCCCcEEecccCcCcc--cCCCCccccCCCCcCCcCCC
Q 003893          662 ---LNTLAVFSVAYNNLSG--KIPERAAQFATFNESSYEGN  697 (788)
Q Consensus       662 ---l~~L~~L~l~~N~l~~--~~~~~~~~~~~l~~~~~~~N  697 (788)
                         ...++.+++++|++..  ..|..+..+..++.+++++|
T Consensus       289 ~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          289 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             CTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             ccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence               2566777777777653  34444555556666666555

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=2.7e-33  Score=308.29  Aligned_cols=310  Identities=18%  Similarity=0.120  Sum_probs=185.2

Q ss_pred             CCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCc----CccCccCCCCcCEEEccCCcCcccCChhhhhcCC-
Q 003893          199 HDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGP----FRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILS-  273 (788)
Q Consensus       199 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-  273 (788)
                      ++|++|+++++.+++.....++..+++|++|++++|.+++.    .+..+..+++|++|++++|.+.+..+..++..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            46788999999887666566568899999999999988743    2445677899999999999987655556666565 


Q ss_pred             ---CCcEEEeeCCcCCC----CCCccccCCCCCCEEEccCCcCCCccchHHhh----CCCCCcEEEccccccCccc----
Q 003893          274 ---RLTVFNISMNALDG----SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAM----GCVSLRSLALSNNNLEGHM----  338 (788)
Q Consensus       274 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~----~l~~L~~L~l~~n~i~~~~----  338 (788)
                         +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+..    ..++|++|++++|.++...    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               69999999999874    34777889999999999999887444443332    2456888888888777543    


Q ss_pred             cccccCCCccCceeccCccCcccCCccCC-----CCCCCcEEEcccCcCCCC----CCccccCCCCccEEEccCCeeccC
Q 003893          339 FSRNFNLTNLIWLQLEGNHFVGEIPQSLS-----KCSSLQGLFLSNNSLSGK----IPRWLGNLTVLRHIIMPKNHIEGP  409 (788)
Q Consensus       339 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~  409 (788)
                      +..+..+++|++|++++|.+....+..+.     ..++|++|++++|.++..    ++..+..+++|++|++++|.+.+.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            23344557777777777776543222222     244666666666655532    233344445555555555544432


Q ss_pred             chhh-----hhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCc
Q 003893          410 IPLE-----FCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPD  484 (788)
Q Consensus       410 ~~~~-----~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~  484 (788)
                      ....     +..+++|++|++++|.++....                   ..++. .+..+++|++|++++|.+++..+.
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~-------------------~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~  302 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGC-------------------GDLCR-VLRAKESLKELSLAGNELGDEGAR  302 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHH-------------------HHHHH-HHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHH-------------------HHHHH-HHhhCCCcceEECCCCCCchHHHH
Confidence            2111     1124444444444444331000                   00121 344455666666666655432222


Q ss_pred             ccc-----CCcCCcEEEccCccCccc----CcccccCCCCCCEEEccCCcCCc
Q 003893          485 RVD-----GLSQLSYLILAHNNLEGE----VPIQLCRLNQLQLLDLSNNNLHG  528 (788)
Q Consensus       485 ~~~-----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~  528 (788)
                      .+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|++++
T Consensus       303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  355 (461)
T 1z7x_W          303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED  355 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred             HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence            221     124556666666655533    23334445555555555555543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=1.6e-30  Score=268.88  Aligned_cols=249  Identities=29%  Similarity=0.464  Sum_probs=137.0

Q ss_pred             ccCceeccCccCcc--cCCccCCCCCCCcEEEccc-CcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEE
Q 003893          347 NLIWLQLEGNHFVG--EIPQSLSKCSSLQGLFLSN-NSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQIL  423 (788)
Q Consensus       347 ~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  423 (788)
                      +++.|++++|.+.+  .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            34444444444444  4444455555555555552 44444445555555555555555555554555555555555555


Q ss_pred             eccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCc-CCcEEEccCccC
Q 003893          424 DISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLS-QLSYLILAHNNL  502 (788)
Q Consensus       424 ~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l  502 (788)
                      ++++|.+.+..+                       . .+..+++|++|++++|++++.+|..+..++ +|++|++++|++
T Consensus       131 ~Ls~N~l~~~~p-----------------------~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l  186 (313)
T 1ogq_A          131 DFSYNALSGTLP-----------------------P-SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ECCSSEEESCCC-----------------------G-GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             eCCCCccCCcCC-----------------------h-HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence            555555442221                       1 344444455555555555444444454444 555555555555


Q ss_pred             cccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCce
Q 003893          503 EGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSIT  582 (788)
Q Consensus       503 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~  582 (788)
                      ++..|..+..++ |++|++++|.+++..|..+..++                                            
T Consensus       187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~--------------------------------------------  221 (313)
T 1ogq_A          187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK--------------------------------------------  221 (313)
T ss_dssp             EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTS--------------------------------------------
T ss_pred             eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCC--------------------------------------------
Confidence            545555555554 55555555555555444443333                                            


Q ss_pred             ecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcC
Q 003893          583 YTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVEL  662 (788)
Q Consensus       583 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l  662 (788)
                               +|+.|++++|.+++..|. +..+++|++|+|++|++++.+|..|..+++|++|++++|++++.+|.. ..+
T Consensus       222 ---------~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l  290 (313)
T 1ogq_A          222 ---------NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL  290 (313)
T ss_dssp             ---------CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred             ---------CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccc
Confidence                     555555666655544443 556667777777777776666777777777777777777777666655 566


Q ss_pred             CCCcEEecccCcC
Q 003893          663 NTLAVFSVAYNNL  675 (788)
Q Consensus       663 ~~L~~L~l~~N~l  675 (788)
                      ++|+.+++++|+.
T Consensus       291 ~~L~~l~l~~N~~  303 (313)
T 1ogq_A          291 QRFDVSAYANNKC  303 (313)
T ss_dssp             GGSCGGGTCSSSE
T ss_pred             cccChHHhcCCCC
Confidence            6777777777763

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=6.6e-28  Score=262.59  Aligned_cols=111  Identities=23%  Similarity=0.303  Sum_probs=62.8

Q ss_pred             CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecc
Q 003893          592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  671 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  671 (788)
                      +|++|++++|.++. +| .+..+++|+.|+|++|++++..|..|.++++|++|++++|++++..+..|..+++|+.|+++
T Consensus       186 ~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  263 (440)
T 3zyj_A          186 NLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA  263 (440)
T ss_dssp             SCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECT
T ss_pred             ccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECC
Confidence            44555555555442 22 24555555556666555555555555555666666666666555555555555566666666


Q ss_pred             cCcCcccCCCCccccCCCCcCCcCCCCCCCCCC
Q 003893          672 YNNLSGKIPERAAQFATFNESSYEGNPFLCGPP  704 (788)
Q Consensus       672 ~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~  704 (788)
                      +|++++..+..+..+++++.+++.+|||.|+|.
T Consensus       264 ~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          264 HNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD  296 (440)
T ss_dssp             TSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred             CCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence            666655555555555556666666666666665

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=8.7e-28  Score=262.61  Aligned_cols=111  Identities=22%  Similarity=0.272  Sum_probs=54.7

Q ss_pred             CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecc
Q 003893          592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  671 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  671 (788)
                      +|++|++++|++++. | .+..+++|+.|+|++|++++..|..|.++++|++|++++|++++..+..|..+++|+.|+++
T Consensus       197 ~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  274 (452)
T 3zyi_A          197 NLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA  274 (452)
T ss_dssp             TCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECC
Confidence            344444444444422 1 24444455555555555554444455555555555555555554444455555555555555


Q ss_pred             cCcCcccCCCCccccCCCCcCCcCCCCCCCCCC
Q 003893          672 YNNLSGKIPERAAQFATFNESSYEGNPFLCGPP  704 (788)
Q Consensus       672 ~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~  704 (788)
                      +|++++..+..+..+++++.+++.+|||.|+|+
T Consensus       275 ~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          275 HNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             SSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred             CCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence            555554444444445555555555555555554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=2.9e-28  Score=257.35  Aligned_cols=180  Identities=21%  Similarity=0.189  Sum_probs=112.6

Q ss_pred             CCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEE
Q 003893          321 CVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHII  400 (788)
Q Consensus       321 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  400 (788)
                      |+.....+.+++.++.+.. .+  .++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+.++++|++|+
T Consensus        30 C~~~~~c~~~~~~l~~iP~-~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           30 CDRNGICKGSSGSLNSIPS-GL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             ECTTSEEECCSTTCSSCCT-TC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCeEeeCCCCCcccccc-cc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            4455556666666664432 22  24677777777776655555666677777777777766665556666666666666


Q ss_pred             ccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCc-ccccccccccEEeCCCC-cc
Q 003893          401 MPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKE-GTFFNCLTLMILDLSYN-HL  478 (788)
Q Consensus       401 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~l~~n-~i  478 (788)
                      +++|.+++..+..+.++++|++|++++|++..                        ++. ..+.++++|++|++++| .+
T Consensus       107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------------l~~~~~~~~l~~L~~L~l~~n~~~  162 (353)
T 2z80_A          107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT------------------------LGETSLFSHLTKLQILRVGNMDTF  162 (353)
T ss_dssp             CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS------------------------SCSSCSCTTCTTCCEEEEEESSSC
T ss_pred             CCCCcCCcCCHhHhCCCccCCEEECCCCCCcc------------------------cCchhhhccCCCCcEEECCCCccc
Confidence            66666665555556666666666666665541                        222 24556667777777776 35


Q ss_pred             CCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCC
Q 003893          479 NGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH  527 (788)
Q Consensus       479 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  527 (788)
                      ....+..+.++++|++|++++|.+++..|..+..+++|++|++++|.+.
T Consensus       163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI  211 (353)
T ss_dssp             CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred             cccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence            5445556666677777777777766666666666666666666666654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.5e-27  Score=246.57  Aligned_cols=249  Identities=22%  Similarity=0.280  Sum_probs=153.2

Q ss_pred             CceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccC--chhhhhcccCCcEEecc
Q 003893          349 IWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGP--IPLEFCQLRILQILDIS  426 (788)
Q Consensus       349 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~  426 (788)
                      +.++.+++.++ .+|..+.  ++|++|++++|.+....+..+..+++|++|++++|.+...  .+..+..+++|++|+++
T Consensus        10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            45666666665 3444332  4677777777777644444566667777777777666532  24455556666666666


Q ss_pred             CCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCC-ccccCCcCCcEEEccCccCccc
Q 003893          427 DNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIP-DRVDGLSQLSYLILAHNNLEGE  505 (788)
Q Consensus       427 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~  505 (788)
                      +|.+.                        .++. .+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+.
T Consensus        87 ~n~i~------------------------~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~  141 (306)
T 2z66_A           87 FNGVI------------------------TMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA  141 (306)
T ss_dssp             SCSEE------------------------EEEE-EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred             CCccc------------------------cChh-hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc
Confidence            66553                        2222 45667777777777777765443 4566677777777777777666


Q ss_pred             CcccccCCCCCCEEEccCCcCCc-cCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceec
Q 003893          506 VPIQLCRLNQLQLLDLSNNNLHG-HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYT  584 (788)
Q Consensus       506 ~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  584 (788)
                      .+..+..+++|++|++++|.+.+ ..|..+..++                                              
T Consensus       142 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~----------------------------------------------  175 (306)
T 2z66_A          142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR----------------------------------------------  175 (306)
T ss_dssp             STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT----------------------------------------------
T ss_pred             chhhcccCcCCCEEECCCCccccccchhHHhhCc----------------------------------------------
Confidence            66666667777777777776654 3343333332                                              


Q ss_pred             ccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCC-
Q 003893          585 YQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELN-  663 (788)
Q Consensus       585 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-  663 (788)
                             +|++|++++|.+++..|..+..+++|++|+|++|++++..+..|..+++|++|++++|++++..|..+..++ 
T Consensus       176 -------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~  248 (306)
T 2z66_A          176 -------NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS  248 (306)
T ss_dssp             -------TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCT
T ss_pred             -------CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhc
Confidence                   566666666666666566666666666666666666655555566666666666666666666666666553 


Q ss_pred             CCcEEecccCcCccc
Q 003893          664 TLAVFSVAYNNLSGK  678 (788)
Q Consensus       664 ~L~~L~l~~N~l~~~  678 (788)
                      +|++|++++|++++.
T Consensus       249 ~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          249 SLAFLNLTQNDFACT  263 (306)
T ss_dssp             TCCEEECTTCCEECS
T ss_pred             cCCEEEccCCCeecc
Confidence            666666666666553

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.8e-27  Score=246.01  Aligned_cols=113  Identities=21%  Similarity=0.318  Sum_probs=53.4

Q ss_pred             CCceEECCCCcccc-cCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEec
Q 003893          592 LLSGLDLSCNRLIG-HIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSV  670 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l  670 (788)
                      +|++|++++|.+++ ..|..+..+++|++|++++|++++..|..|..+++|++|++++|++++..+..+..+++|+.|++
T Consensus       151 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  230 (306)
T 2z66_A          151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY  230 (306)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred             CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence            44444444444443 33444444444555555554444444444444444555555555444444444444444455555


Q ss_pred             ccCcCcccCCCCccccC-CCCcCCcCCCCCCCCCC
Q 003893          671 AYNNLSGKIPERAAQFA-TFNESSYEGNPFLCGPP  704 (788)
Q Consensus       671 ~~N~l~~~~~~~~~~~~-~l~~~~~~~Np~~C~~~  704 (788)
                      ++|++++..|..+..++ +++.+++.+||+.|+|+
T Consensus       231 ~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             TTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             CCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            55544444444444442 44444444455444443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=5e-28  Score=255.54  Aligned_cols=283  Identities=22%  Similarity=0.233  Sum_probs=196.8

Q ss_pred             CCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEE
Q 003893          296 MNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGL  375 (788)
Q Consensus       296 l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  375 (788)
                      ++.....+++++.++ .+|..++   ++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..|.++++|++|
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            444555677777776 6776543   467777777777777666667777788888888887776667777788888888


Q ss_pred             EcccCcCCCCCCccccCCCCccEEEccCCeeccCch-hhhhcccCCcEEeccCCc-CCCCCCCCCCCCcccEEEccCccc
Q 003893          376 FLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIP-LEFCQLRILQILDISDNN-ISGSLPSCYDFVCIEQVHLSKNML  453 (788)
Q Consensus       376 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~L~~L~l~~n~~  453 (788)
                      ++++|.+++..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|. +.                      
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~----------------------  163 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT----------------------  163 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC----------------------
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc----------------------
Confidence            888888875555557778888888888888775444 467778888888888874 33                      


Q ss_pred             ccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCccc
Q 003893          454 HGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSC  533 (788)
Q Consensus       454 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  533 (788)
                        .++...+.++++|++|++++|.+++..|..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..
T Consensus       164 --~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  241 (353)
T 2z80_A          164 --KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE  241 (353)
T ss_dssp             --EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-
T ss_pred             --ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccc
Confidence              233336677788888888888888777788888888888888888887444444556788888888888887654433


Q ss_pred             ccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccc----cCcc
Q 003893          534 FDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIG----HIPP  609 (788)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~~~  609 (788)
                      +....                                                  ....++.++++++.+.+    .+|.
T Consensus       242 l~~~~--------------------------------------------------~~~~l~~l~L~~~~l~~~~l~~l~~  271 (353)
T 2z80_A          242 LSTGE--------------------------------------------------TNSLIKKFTFRNVKITDESLFQVMK  271 (353)
T ss_dssp             -------------------------------------------------------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred             ccccc--------------------------------------------------ccchhhccccccccccCcchhhhHH
Confidence            22111                                                  11245666666666553    3566


Q ss_pred             cccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCc
Q 003893          610 QIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIP  656 (788)
Q Consensus       610 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  656 (788)
                      .+..+++|+.|++++|+++...+..|..+++|++|++++|++.+..|
T Consensus       272 ~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             HHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            67777788888888888775444445777777777777777775443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=4.1e-26  Score=248.39  Aligned_cols=247  Identities=21%  Similarity=0.205  Sum_probs=145.9

Q ss_pred             ceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCc
Q 003893          350 WLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNN  429 (788)
Q Consensus       350 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  429 (788)
                      .++.++..+. .+|..+.  ++++.|++++|.+....+..|.++++|++|++++|.+.+..+..|.++++|++|++++|+
T Consensus        47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~  123 (440)
T 3zyj_A           47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR  123 (440)
T ss_dssp             EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred             EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence            3444444444 3333332  355666666666655555556666666666666666665555666666666666666666


Q ss_pred             CCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCcc-CcccCcc
Q 003893          430 ISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNN-LEGEVPI  508 (788)
Q Consensus       430 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~  508 (788)
                      ++.                        ++...|..+++|++|++++|++....+..|..+++|++|++++|+ +....+.
T Consensus       124 l~~------------------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~  179 (440)
T 3zyj_A          124 LTT------------------------IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG  179 (440)
T ss_dssp             CSS------------------------CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred             CCe------------------------eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc
Confidence            552                        222244555555566666655554444455556666666666533 3333334


Q ss_pred             cccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCC
Q 003893          509 QLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGR  588 (788)
Q Consensus       509 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~  588 (788)
                      .|.++++|++|++++|.++....  +..+                                                   
T Consensus       180 ~~~~l~~L~~L~L~~n~l~~~~~--~~~l---------------------------------------------------  206 (440)
T 3zyj_A          180 AFEGLSNLRYLNLAMCNLREIPN--LTPL---------------------------------------------------  206 (440)
T ss_dssp             TTTTCSSCCEEECTTSCCSSCCC--CTTC---------------------------------------------------
T ss_pred             hhhcccccCeecCCCCcCccccc--cCCC---------------------------------------------------
Confidence            55666666666666666553211  1111                                                   


Q ss_pred             ccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEE
Q 003893          589 VPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVF  668 (788)
Q Consensus       589 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  668 (788)
                        ++|+.|+|++|.+++..|..|.++++|+.|+|++|++++..+..|.++++|++|+|++|+++...+..|..+++|+.|
T Consensus       207 --~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  284 (440)
T 3zyj_A          207 --IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI  284 (440)
T ss_dssp             --SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEE
T ss_pred             --cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEE
Confidence              156667777776666666667777777777777777776666667777777777777777776666666667777777


Q ss_pred             ecccCcCccc
Q 003893          669 SVAYNNLSGK  678 (788)
Q Consensus       669 ~l~~N~l~~~  678 (788)
                      ++++|++.|.
T Consensus       285 ~L~~Np~~Cd  294 (440)
T 3zyj_A          285 HLHHNPWNCN  294 (440)
T ss_dssp             ECCSSCEECS
T ss_pred             EcCCCCccCC
Confidence            7777776654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=4.6e-26  Score=248.95  Aligned_cols=87  Identities=20%  Similarity=0.188  Sum_probs=48.4

Q ss_pred             CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecc
Q 003893          592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  671 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  671 (788)
                      +|+.|++++|.+++..|..|.++++|+.|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|+++
T Consensus       219 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  298 (452)
T 3zyi_A          219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH  298 (452)
T ss_dssp             TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECC
T ss_pred             cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEcc
Confidence            45555555555555555555555555555555555555555555555555555555555554444455555555555555


Q ss_pred             cCcCccc
Q 003893          672 YNNLSGK  678 (788)
Q Consensus       672 ~N~l~~~  678 (788)
                      +|++.+.
T Consensus       299 ~Np~~Cd  305 (452)
T 3zyi_A          299 HNPWNCD  305 (452)
T ss_dssp             SSCEECS
T ss_pred             CCCcCCC
Confidence            5555543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=9.3e-29  Score=281.32  Aligned_cols=434  Identities=13%  Similarity=0.087  Sum_probs=249.8

Q ss_pred             hhHhhhcCCCCCEEeCCCCCCCCcccCCCCccC------------CCCCCCEEEcCCCCCCCCccHhhhc-CC-CCCEEe
Q 003893           38 LQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLC------------PLVHLQELHMADNDLRGSLPWCLAN-MT-SLRILD  103 (788)
Q Consensus        38 ~~~~~~~l~~L~~L~L~~~~l~~~~~~l~~~l~------------~l~~L~~L~L~~n~i~~~~~~~~~~-l~-~L~~L~  103 (788)
                      +..+...+++|++|+++++........+|..++            .+++|++|+|++|.+++..+..+.. ++ +|++|+
T Consensus        65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~  144 (592)
T 3ogk_B           65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK  144 (592)
T ss_dssp             HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred             hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence            333434488899999987642111111112222            6788888888888877666666665 33 488888


Q ss_pred             CCCCcC-cCC-CChhhhcCCCCCCEEEcCCCcccCccC---ccccCCCCCccEEEccCCccchhhhccccCCCCcccccE
Q 003893          104 VSSNQL-IGS-ISSSPLIHLTSIEDLILSDNHFQIPIS---LEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQS  178 (788)
Q Consensus       104 Ls~n~l-~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~---~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~  178 (788)
                      +++|.. ... ++. ....+++|++|++++|.+++...   ......+++|+.|++++|.+.+...              
T Consensus       145 L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~--------------  209 (592)
T 3ogk_B          145 LDKCSGFTTDGLLS-IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP--------------  209 (592)
T ss_dssp             EESCEEEEHHHHHH-HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCH--------------
T ss_pred             CcCCCCcCHHHHHH-HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCH--------------
Confidence            888752 110 111 22468888888888887653311   0123457788888887776542110              


Q ss_pred             EEccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCccc---CcCccCccCCCCcCEEEc
Q 003893          179 LLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLV---GPFRLPIHSHKQLRLLDV  255 (788)
Q Consensus       179 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l  255 (788)
                                ..++..+..+++|++|++++|.+.+ ++. .+..+++|++|+++.....   ......+..+++|+.+++
T Consensus       210 ----------~~l~~~~~~~~~L~~L~L~~~~~~~-l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l  277 (592)
T 3ogk_B          210 ----------KDLETIARNCRSLVSVKVGDFEILE-LVG-FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGL  277 (592)
T ss_dssp             ----------HHHHHHHHHCTTCCEEECSSCBGGG-GHH-HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEE
T ss_pred             ----------HHHHHHHhhCCCCcEEeccCccHHH-HHH-HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCc
Confidence                      1123344567788888888887754 443 3578888888888753222   222345566778888888


Q ss_pred             cCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCC-ccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccc---
Q 003893          256 SKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIP-SSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN---  331 (788)
Q Consensus       256 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~---  331 (788)
                      +++... .+|..+ ..+++|++|++++|.+++... ..+..+++|++|+++ +.+.+.....+...+++|++|++++   
T Consensus       278 ~~~~~~-~l~~~~-~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~  354 (592)
T 3ogk_B          278 SYMGPN-EMPILF-PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGAD  354 (592)
T ss_dssp             TTCCTT-TGGGGG-GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCC
T ss_pred             cccchh-HHHHHH-hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCcc
Confidence            775432 444433 336788888888887653322 235677888888887 4343333344445677888888873   


Q ss_pred             --------cccCcccccc-ccCCCccCceeccCccCcccCCccCCC-CCCCcEEEcc----cCcCCCC-----CCccccC
Q 003893          332 --------NNLEGHMFSR-NFNLTNLIWLQLEGNHFVGEIPQSLSK-CSSLQGLFLS----NNSLSGK-----IPRWLGN  392 (788)
Q Consensus       332 --------n~i~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~l~----~n~l~~~-----~~~~l~~  392 (788)
                              +.++...... ...+++|++|+++.+.+++.....+.. +++|++|+++    .|.+++.     ++..+.+
T Consensus       355 ~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~  434 (592)
T 3ogk_B          355 EQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG  434 (592)
T ss_dssp             SSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHH
T ss_pred             ccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHh
Confidence                    3444322211 234667777777666665544444433 6667777775    3344432     1112344


Q ss_pred             CCCccEEEccCCe--eccCchhhhh-cccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCccccccccccc
Q 003893          393 LTVLRHIIMPKNH--IEGPIPLEFC-QLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLM  469 (788)
Q Consensus       393 l~~L~~L~l~~n~--~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  469 (788)
                      +++|+.|+++.|.  +++.....+. .+++|++|++++|+++                       +......+.++++|+
T Consensus       435 ~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~-----------------------~~~~~~~~~~~~~L~  491 (592)
T 3ogk_B          435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES-----------------------DEGLMEFSRGCPNLQ  491 (592)
T ss_dssp             CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSS-----------------------HHHHHHHHTCCTTCC
T ss_pred             CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCC-----------------------HHHHHHHHhcCcccC
Confidence            5666666665332  3322222222 2555666666555543                       221121446677888


Q ss_pred             EEeCCCCccCCC-CCccccCCcCCcEEEccCccCcccCcccc-cCCCCCCEEEccCC
Q 003893          470 ILDLSYNHLNGN-IPDRVDGLSQLSYLILAHNNLEGEVPIQL-CRLNQLQLLDLSNN  524 (788)
Q Consensus       470 ~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n  524 (788)
                      +|++++|.+++. .+.....+++|++|++++|+++......+ ..+|.+....+..+
T Consensus       492 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          492 KLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             EEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             eeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            888888876533 23334567888888888888775433333 35666666655544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=1.2e-28  Score=280.34  Aligned_cols=377  Identities=12%  Similarity=0.044  Sum_probs=200.4

Q ss_pred             CCCCcCEEEccCCcCcccCChhhhhcCCC-CcEEEeeCCcC-CC-CCCccccCCCCCCEEEccCCcCCCcc---chHHhh
Q 003893          246 SHKQLRLLDVSKNNFQGHIPLEIGDILSR-LTVFNISMNAL-DG-SIPSSFGNMNFLQFLDLSNNQLTGEI---PEHLAM  319 (788)
Q Consensus       246 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~-L~~L~L~~n~l-~~-~~~~~~~~l~~L~~L~L~~n~i~~~~---~~~~~~  319 (788)
                      .+++|++|++++|.+++..+..+...+++ |++|++++|.. .. ..+.....+++|++|++++|.+++..   -..+..
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            34455555555554443333333332233 55555555441 10 01111224455555555555544221   111223


Q ss_pred             CCCCCcEEEccccccCccc----cccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCC---CCCCccccC
Q 003893          320 GCVSLRSLALSNNNLEGHM----FSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS---GKIPRWLGN  392 (788)
Q Consensus       320 ~l~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~l~~  392 (788)
                      .+++|++|++++|.+++..    +..+.++++|++|++++|.+.+ .+..+..+++|++|+++.....   ...+..+..
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            3555555555555544211    1122344555555555555542 3344455555555555532211   122233444


Q ss_pred             CCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCC-C-CCCCCcccEEEccCcccccccCcccccccccccE
Q 003893          393 LTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLP-S-CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMI  470 (788)
Q Consensus       393 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  470 (788)
                      +++|+.+.++++.. ...+..+..+++|++|++++|.+.+... . ...+++|+.|++.++ +.+......+..+++|++
T Consensus       269 ~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~  346 (592)
T 3ogk_B          269 PRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKR  346 (592)
T ss_dssp             CTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCE
T ss_pred             cccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cCHHHHHHHHHhCCCCCE
Confidence            55555555555322 2344445555566666666655432211 1 123555666666522 222212224456788888


Q ss_pred             EeCCC-----------CccCCC-CCccccCCcCCcEEEccCccCcccCcccccC-CCCCCEEEcc----CCcCCccCc--
Q 003893          471 LDLSY-----------NHLNGN-IPDRVDGLSQLSYLILAHNNLEGEVPIQLCR-LNQLQLLDLS----NNNLHGHIP--  531 (788)
Q Consensus       471 L~l~~-----------n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~~~--  531 (788)
                      |++++           +.+++. .+.....+++|++|++..|.+++..+..+.. +++|++|+++    .|.+++.+.  
T Consensus       347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~  426 (592)
T 3ogk_B          347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN  426 (592)
T ss_dssp             EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred             EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence            88883           444422 1122345788888888888887665555554 7888888886    455554321  


Q ss_pred             ---ccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCc--cccc
Q 003893          532 ---SCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNR--LIGH  606 (788)
Q Consensus       532 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~  606 (788)
                         ..+..+                                                     ++|+.|++++|.  +++.
T Consensus       427 ~~~~~~~~~-----------------------------------------------------~~L~~L~L~~~~~~l~~~  453 (592)
T 3ogk_B          427 GVRSLLIGC-----------------------------------------------------KKLRRFAFYLRQGGLTDL  453 (592)
T ss_dssp             HHHHHHHHC-----------------------------------------------------TTCCEEEEECCGGGCCHH
T ss_pred             HHHHHHHhC-----------------------------------------------------CCCCEEEEecCCCCccHH
Confidence               111111                                                     268888887543  5544


Q ss_pred             Cccccc-ccccCCeEeCCCCCCCC-CCCcccCCCCCCCeeeCCCcccCcc-CchhhhcCCCCcEEecccCcCccc
Q 003893          607 IPPQIG-NLTKIQTLNLSHNNLAG-PIPSTFSNLRNIESLDLSYNKLSWK-IPYQLVELNTLAVFSVAYNNLSGK  678 (788)
Q Consensus       607 ~~~~~~-~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~l~~N~l~~~  678 (788)
                      .+..+. .+++|+.|+|++|++++ ..+..+..+++|++|++++|+++.. ++.....+++|+.|++++|+++..
T Consensus       454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            444443 37888999999888875 2344557788899999999987654 333445688899999999987754

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=3.3e-26  Score=233.84  Aligned_cols=234  Identities=25%  Similarity=0.264  Sum_probs=122.4

Q ss_pred             CCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCc-CCCCCCCCCCCCcccEEEcc
Q 003893          371 SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNN-ISGSLPSCYDFVCIEQVHLS  449 (788)
Q Consensus       371 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~L~~L~l~  449 (788)
                      +|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|. +.                  
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~------------------   94 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR------------------   94 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC------------------
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc------------------
Confidence            45555555555544444444445555555555555444444445555555555555553 32                  


Q ss_pred             CcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCcc
Q 003893          450 KNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGH  529 (788)
Q Consensus       450 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  529 (788)
                            .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++.
T Consensus        95 ------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  168 (285)
T 1ozn_A           95 ------SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV  168 (285)
T ss_dssp             ------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             ------ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence                  12222455555666666666666555555556666666666666666544444555566666666666655544


Q ss_pred             CcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcc
Q 003893          530 IPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPP  609 (788)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  609 (788)
                      .+..+..+.                                                     +|+.|++++|.+++..|.
T Consensus       169 ~~~~~~~l~-----------------------------------------------------~L~~L~l~~n~l~~~~~~  195 (285)
T 1ozn_A          169 PERAFRGLH-----------------------------------------------------SLDRLLLHQNRVAHVHPH  195 (285)
T ss_dssp             CTTTTTTCT-----------------------------------------------------TCCEEECCSSCCCEECTT
T ss_pred             CHHHhcCcc-----------------------------------------------------ccCEEECCCCcccccCHh
Confidence            443333332                                                     455566666665555555


Q ss_pred             cccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCC
Q 003893          610 QIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPER  682 (788)
Q Consensus       610 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~  682 (788)
                      .+..+++|+.|++++|++++..+..+..+++|++|++++|++....+.. .-...++.+..+.+.+.+..|..
T Consensus       196 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred             HccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence            5666666666666666666555555666666666666666655322210 00112333344555555555543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=5.2e-26  Score=232.35  Aligned_cols=224  Identities=24%  Similarity=0.230  Sum_probs=107.0

Q ss_pred             cEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccC
Q 003893          276 TVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEG  355 (788)
Q Consensus       276 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~  355 (788)
                      ++++.+++.++ .+|..+  .++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+.++++|++|++++
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            34444444444 223221  234555555555554 33333333444455555544444444444444444444444444


Q ss_pred             cc-CcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCC
Q 003893          356 NH-FVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSL  434 (788)
Q Consensus       356 n~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  434 (788)
                      |. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|+++   
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---  166 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS---  166 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc---
Confidence            43 33333444444444444444444444333444444444444444444444333333344444444444444332   


Q ss_pred             CCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCC
Q 003893          435 PSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLN  514 (788)
Q Consensus       435 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  514 (788)
                                           .++...+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..+..+..++
T Consensus       167 ---------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  225 (285)
T 1ozn_A          167 ---------------------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR  225 (285)
T ss_dssp             ---------------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred             ---------------------ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence                                 22222455556666666666666655555566666666666666666654445555666


Q ss_pred             CCCEEEccCCcCC
Q 003893          515 QLQLLDLSNNNLH  527 (788)
Q Consensus       515 ~L~~L~L~~n~l~  527 (788)
                      +|++|++++|++.
T Consensus       226 ~L~~L~l~~N~~~  238 (285)
T 1ozn_A          226 ALQYLRLNDNPWV  238 (285)
T ss_dssp             TCCEEECCSSCEE
T ss_pred             ccCEEeccCCCcc
Confidence            6666666666554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=1.4e-25  Score=233.22  Aligned_cols=235  Identities=20%  Similarity=0.289  Sum_probs=152.6

Q ss_pred             CCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEe
Q 003893          345 LTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILD  424 (788)
Q Consensus       345 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  424 (788)
                      .+.++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            466777777777777 55666667777777777777777 66667777777777777777776 5566677777777777


Q ss_pred             ccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcc
Q 003893          425 ISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEG  504 (788)
Q Consensus       425 l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~  504 (788)
                      +++|.+.+..|..+.                        .      .         ..+..+.++++|++|++++|.++ 
T Consensus       157 L~~n~~~~~~p~~~~------------------------~------~---------~~~~~~~~l~~L~~L~L~~n~l~-  196 (328)
T 4fcg_A          157 IRACPELTELPEPLA------------------------S------T---------DASGEHQGLVNLQSLRLEWTGIR-  196 (328)
T ss_dssp             EEEETTCCCCCSCSE------------------------E------E---------C-CCCEEESTTCCEEEEEEECCC-
T ss_pred             CCCCCCccccChhHh------------------------h------c---------cchhhhccCCCCCEEECcCCCcC-
Confidence            777665544332110                        0      0         00112334555555555555555 


Q ss_pred             cCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceec
Q 003893          505 EVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYT  584 (788)
Q Consensus       505 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  584 (788)
                      .+|..+..+++|++|++++|++++.++ .+..++                                              
T Consensus       197 ~lp~~l~~l~~L~~L~L~~N~l~~l~~-~l~~l~----------------------------------------------  229 (328)
T 4fcg_A          197 SLPASIANLQNLKSLKIRNSPLSALGP-AIHHLP----------------------------------------------  229 (328)
T ss_dssp             CCCGGGGGCTTCCEEEEESSCCCCCCG-GGGGCT----------------------------------------------
T ss_pred             cchHhhcCCCCCCEEEccCCCCCcCch-hhccCC----------------------------------------------
Confidence            445555555666666666665554322 233322                                              


Q ss_pred             ccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCC
Q 003893          585 YQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNT  664 (788)
Q Consensus       585 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  664 (788)
                             +|++|++++|.+.+.+|..+..+++|+.|+|++|++.+.+|..+..+++|++|+|++|++.+.+|..+..+++
T Consensus       230 -------~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~  302 (328)
T 4fcg_A          230 -------KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA  302 (328)
T ss_dssp             -------TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred             -------CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence                   5666666666666666777777777777777777777777777777777777777777777777777777777


Q ss_pred             CcEEecccCcCc
Q 003893          665 LAVFSVAYNNLS  676 (788)
Q Consensus       665 L~~L~l~~N~l~  676 (788)
                      |+.+++..|.+.
T Consensus       303 L~~l~l~~~~~~  314 (328)
T 4fcg_A          303 NCIILVPPHLQA  314 (328)
T ss_dssp             TCEEECCGGGSC
T ss_pred             ceEEeCCHHHHH
Confidence            777777766554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=2.7e-25  Score=231.01  Aligned_cols=224  Identities=20%  Similarity=0.224  Sum_probs=183.3

Q ss_pred             CCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeC
Q 003893          394 TVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDL  473 (788)
Q Consensus       394 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l  473 (788)
                      +.++.|++++|.+. .+|..+..+++|++|++++|.+.                        .+|. .+..+++|++|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~------------------------~lp~-~~~~l~~L~~L~L  134 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM------------------------ELPD-TMQQFAGLETLTL  134 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC------------------------CCCS-CGGGGTTCSEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc------------------------chhH-HHhccCCCCEEEC
Confidence            44555555555555 33444445555555555555543                        4444 6778888999999


Q ss_pred             CCCccCCCCCccccCCcCCcEEEccCccCcccCcccccC---------CCCCCEEEccCCcCCccCcccccccchhhhcc
Q 003893          474 SYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCR---------LNQLQLLDLSNNNLHGHIPSCFDNTTLHERYN  544 (788)
Q Consensus       474 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---------l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~  544 (788)
                      ++|.++ .+|..+..+++|++|++++|++.+.+|..+..         +++|++|++++|.++ .+|..+..++      
T Consensus       135 s~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~------  206 (328)
T 4fcg_A          135 ARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ------  206 (328)
T ss_dssp             ESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCT------
T ss_pred             CCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCC------
Confidence            999888 67888888899999999998877777776654         999999999999998 5565565554      


Q ss_pred             CCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCC
Q 003893          545 NGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSH  624 (788)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  624 (788)
                                                                     +|++|++++|.+++ +|..+..+++|++|+|++
T Consensus       207 -----------------------------------------------~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~  238 (328)
T 4fcg_A          207 -----------------------------------------------NLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRG  238 (328)
T ss_dssp             -----------------------------------------------TCCEEEEESSCCCC-CCGGGGGCTTCCEEECTT
T ss_pred             -----------------------------------------------CCCEEEccCCCCCc-CchhhccCCCCCEEECcC
Confidence                                                           89999999999995 566799999999999999


Q ss_pred             CCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCC
Q 003893          625 NNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPF  699 (788)
Q Consensus       625 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~  699 (788)
                      |++.+.+|..|..+++|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+.+++++..+.+..|..
T Consensus       239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999998888776644

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=7.1e-27  Score=242.31  Aligned_cols=243  Identities=22%  Similarity=0.197  Sum_probs=163.8

Q ss_pred             ccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEecc
Q 003893          347 NLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDIS  426 (788)
Q Consensus       347 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  426 (788)
                      +|++|++++|.+.+..+..|..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..     ..++|++|+++
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~  107 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA  107 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECC
Confidence            34444444444433333344444444444444444443222  444555555555555554322     23566666666


Q ss_pred             CCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccC
Q 003893          427 DNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEV  506 (788)
Q Consensus       427 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~  506 (788)
                      +|.+.+.                        +   ...+++|++|++++|++++..+..+..+++|++|++++|.+++..
T Consensus       108 ~n~l~~~------------------------~---~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  160 (317)
T 3o53_A          108 NNNISRV------------------------S---CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN  160 (317)
T ss_dssp             SSCCSEE------------------------E---ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred             CCccCCc------------------------C---ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence            6665421                        1   122467888888888888776777788888888888888888766


Q ss_pred             cccc-cCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecc
Q 003893          507 PIQL-CRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTY  585 (788)
Q Consensus       507 ~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  585 (788)
                      +..+ ..+++|++|++++|.+++..+..                                                    
T Consensus       161 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~----------------------------------------------------  188 (317)
T 3o53_A          161 FAELAASSDTLEHLNLQYNFIYDVKGQV----------------------------------------------------  188 (317)
T ss_dssp             GGGGGGGTTTCCEEECTTSCCCEEECCC----------------------------------------------------
T ss_pred             HHHHhhccCcCCEEECCCCcCccccccc----------------------------------------------------
Confidence            6665 46888999999988887542211                                                    


Q ss_pred             cCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccC-ccCchhhhcCCC
Q 003893          586 QGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS-WKIPYQLVELNT  664 (788)
Q Consensus       586 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~  664 (788)
                         ..++|++|++++|++++..+ .+..+++|+.|+|++|++++ +|..+..+++|++|++++|++. +..|..+..+++
T Consensus       189 ---~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~  263 (317)
T 3o53_A          189 ---VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR  263 (317)
T ss_dssp             ---CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHH
T ss_pred             ---ccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhcccc
Confidence               12378999999999986544 48889999999999999994 5777889999999999999998 778888888999


Q ss_pred             CcEEecccC-cCcccCC
Q 003893          665 LAVFSVAYN-NLSGKIP  680 (788)
Q Consensus       665 L~~L~l~~N-~l~~~~~  680 (788)
                      |+.+++++| .+++..|
T Consensus       264 L~~l~l~~~~~l~~~~~  280 (317)
T 3o53_A          264 VQTVAKQTVKKLTGQNE  280 (317)
T ss_dssp             HHHHHHHHHHHHHSSSS
T ss_pred             ceEEECCCchhccCCch
Confidence            999999855 5555433

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=2.5e-27  Score=245.72  Aligned_cols=256  Identities=19%  Similarity=0.161  Sum_probs=190.4

Q ss_pred             ceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCc
Q 003893          350 WLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNN  429 (788)
Q Consensus       350 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  429 (788)
                      ..+++.+.+.......+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+  +..+++|++|++++|.
T Consensus        14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~   91 (317)
T 3o53_A           14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY   91 (317)
T ss_dssp             EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred             EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence            33444444443333344455667777777777766555666667777777777776664443  5666666666666665


Q ss_pred             CCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCccc
Q 003893          430 ISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQ  509 (788)
Q Consensus       430 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  509 (788)
                      ++                             .+...++|++|++++|.+++..+.   .+++|++|++++|++++..+..
T Consensus        92 l~-----------------------------~l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~  139 (317)
T 3o53_A           92 VQ-----------------------------ELLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLD  139 (317)
T ss_dssp             EE-----------------------------EEEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBC
T ss_pred             cc-----------------------------cccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchh
Confidence            54                             122347899999999999865443   3678999999999999877888


Q ss_pred             ccCCCCCCEEEccCCcCCccCccccc-ccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCC
Q 003893          510 LCRLNQLQLLDLSNNNLHGHIPSCFD-NTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGR  588 (788)
Q Consensus       510 ~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~  588 (788)
                      +..+++|++|++++|.+++..+..+. .+.                                                  
T Consensus       140 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~--------------------------------------------------  169 (317)
T 3o53_A          140 EGCRSRVQYLDLKLNEIDTVNFAELAASSD--------------------------------------------------  169 (317)
T ss_dssp             TGGGSSEEEEECTTSCCCEEEGGGGGGGTT--------------------------------------------------
T ss_pred             hhccCCCCEEECCCCCCCcccHHHHhhccC--------------------------------------------------
Confidence            89999999999999999877665542 222                                                  


Q ss_pred             ccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEE
Q 003893          589 VPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVF  668 (788)
Q Consensus       589 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  668 (788)
                         +|++|++++|.+++..  ....+++|++|+|++|++++.. ..|..+++|++|++++|+++ .+|..+..+++|+.|
T Consensus       170 ---~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L  242 (317)
T 3o53_A          170 ---TLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHF  242 (317)
T ss_dssp             ---TCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEE
T ss_pred             ---cCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcch-hhhcccCcccEEECcCCccc-chhhHhhcCCCCCEE
Confidence               7999999999998663  3345899999999999999654 45889999999999999999 467788899999999


Q ss_pred             ecccCcCc-ccCCCCccccCCCCcCCcCC
Q 003893          669 SVAYNNLS-GKIPERAAQFATFNESSYEG  696 (788)
Q Consensus       669 ~l~~N~l~-~~~~~~~~~~~~l~~~~~~~  696 (788)
                      ++++|+++ +.+|..+..++.++.+++.+
T Consensus       243 ~l~~N~~~~~~~~~~~~~~~~L~~l~l~~  271 (317)
T 3o53_A          243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQT  271 (317)
T ss_dssp             ECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred             EccCCCccCcCHHHHHhccccceEEECCC
Confidence            99999998 55666666777777776663

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=3.3e-24  Score=239.48  Aligned_cols=94  Identities=26%  Similarity=0.349  Sum_probs=61.2

Q ss_pred             CCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceec
Q 003893          274 RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQL  353 (788)
Q Consensus       274 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l  353 (788)
                      +++.|++++|.++ .+|..+.  ++|++|++++|.++ .+|.    .+++|++|++++|.++++..    .+++|++|++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEEC
Confidence            5788888888877 5555444  67888888888777 6665    35677777777777664332    4566666666


Q ss_pred             cCccCcccCCccCCCCCCCcEEEcccCcCC
Q 003893          354 EGNHFVGEIPQSLSKCSSLQGLFLSNNSLS  383 (788)
Q Consensus       354 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  383 (788)
                      ++|.+.+ +|.   .+++|+.|++++|+++
T Consensus       109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~  134 (622)
T 3g06_A          109 FSNPLTH-LPA---LPSGLCKLWIFGNQLT  134 (622)
T ss_dssp             CSCCCCC-CCC---CCTTCCEEECCSSCCS
T ss_pred             cCCcCCC-CCC---CCCCcCEEECCCCCCC
Confidence            6666653 222   3455666666666555

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=6.2e-24  Score=237.24  Aligned_cols=114  Identities=27%  Similarity=0.307  Sum_probs=79.1

Q ss_pred             CcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEE
Q 003893          249 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLA  328 (788)
Q Consensus       249 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~  328 (788)
                      .++.|++++|.++ .+|..++   ++|++|++++|.++. +|.   .+++|++|++++|.++ .+|.    .+++|++|+
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~  107 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELS  107 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEE
Confidence            4777888888777 6676553   578888888887773 444   4677888888888877 6665    467788888


Q ss_pred             ccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCC
Q 003893          329 LSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS  383 (788)
Q Consensus       329 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~  383 (788)
                      +++|.+++...    .+++|+.|++++|++.. +|..   +++|++|++++|.++
T Consensus       108 Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~  154 (622)
T 3g06_A          108 IFSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA  154 (622)
T ss_dssp             ECSCCCCCCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred             CcCCcCCCCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC
Confidence            88887776433    45778888888887764 3332   366667777666665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=2.8e-26  Score=251.64  Aligned_cols=235  Identities=22%  Similarity=0.182  Sum_probs=131.1

Q ss_pred             CccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEec
Q 003893          346 TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI  425 (788)
Q Consensus       346 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  425 (788)
                      ++|++|++++|.+.+..|..|..+++|++|++++|.+++..|  +..+++|++|++++|.+.+..+     .++|+.|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence            355555555555554444455555555555555555543332  4445555555555554442221     144444444


Q ss_pred             cCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCccc
Q 003893          426 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGE  505 (788)
Q Consensus       426 ~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~  505 (788)
                      ++|.+.                       +..+    ..+++|++|++++|.+++..|..+..+++|+.|++++|.+++.
T Consensus       107 ~~N~l~-----------------------~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (487)
T 3oja_A          107 ANNNIS-----------------------RVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (487)
T ss_dssp             CSSCCC-----------------------CEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE
T ss_pred             cCCcCC-----------------------CCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc
Confidence            444433                       2111    2245677777777777766666666677777777777777766


Q ss_pred             Cccccc-CCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceec
Q 003893          506 VPIQLC-RLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYT  584 (788)
Q Consensus       506 ~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  584 (788)
                      .|..+. .+++|++|++++|.+++..+..                                                   
T Consensus       160 ~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~---------------------------------------------------  188 (487)
T 3oja_A          160 NFAELAASSDTLEHLNLQYNFIYDVKGQV---------------------------------------------------  188 (487)
T ss_dssp             EGGGGGGGTTTCCEEECTTSCCCEEECCC---------------------------------------------------
T ss_pred             ChHHHhhhCCcccEEecCCCccccccccc---------------------------------------------------
Confidence            665554 5677777777777665442211                                                   


Q ss_pred             ccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccC-ccCchhhhcCC
Q 003893          585 YQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS-WKIPYQLVELN  663 (788)
Q Consensus       585 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~  663 (788)
                          ..++|+.|+|++|.+++..| .+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|..+..++
T Consensus       189 ----~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~  262 (487)
T 3oja_A          189 ----VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ  262 (487)
T ss_dssp             ----CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCH
T ss_pred             ----cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCC
Confidence                01256666666666665443 36666666666666666664 4555666666666666666665 44455555555


Q ss_pred             CCcEEecc
Q 003893          664 TLAVFSVA  671 (788)
Q Consensus       664 ~L~~L~l~  671 (788)
                      .|+.++++
T Consensus       263 ~L~~l~~~  270 (487)
T 3oja_A          263 RVQTVAKQ  270 (487)
T ss_dssp             HHHHHHHH
T ss_pred             CCcEEecc
Confidence            55554443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=3.9e-24  Score=216.22  Aligned_cols=186  Identities=24%  Similarity=0.257  Sum_probs=146.0

Q ss_pred             ccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccC
Q 003893          466 LTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNN  545 (788)
Q Consensus       466 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~  545 (788)
                      +++++|++++|++++..+..|..+++|++|++++|.++...+..|..+++|++|++++|++.+..+..|..+.       
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-------  109 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLV-------  109 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCS-------
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHccccc-------
Confidence            4677888888887766666777788888888888887765566667788888888888887766665555444       


Q ss_pred             CCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCC
Q 003893          546 GSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN  625 (788)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  625 (788)
                                                                    +|++|++++|.+++..+..|..+++|++|+|++|
T Consensus       110 ----------------------------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  143 (270)
T 2o6q_A          110 ----------------------------------------------NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN  143 (270)
T ss_dssp             ----------------------------------------------SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ----------------------------------------------CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence                                                          6888888888888777777888888888888888


Q ss_pred             CCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCCCCC
Q 003893          626 NLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPP  704 (788)
Q Consensus       626 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~  704 (788)
                      ++++..+..|..+++|++|++++|+++...+..|..+++|+.|++++|++++..+..+..+++++.+++.+|||.|+|+
T Consensus       144 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             cCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            8887776778888888888888888887666677888888888888888887777667778888888888888888886

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=1.7e-26  Score=238.84  Aligned_cols=154  Identities=29%  Similarity=0.335  Sum_probs=97.9

Q ss_pred             ccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCccc--Ccccc--cCCCCCCEEEccCCcCCccCc---ccccccc
Q 003893          466 LTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGE--VPIQL--CRLNQLQLLDLSNNNLHGHIP---SCFDNTT  538 (788)
Q Consensus       466 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~L~~n~l~~~~~---~~~~~~~  538 (788)
                      ++|++|++++|++.+..+..+..+++|++|++++|++.+.  .+..+  ..+++|++|++++|++++...   ..+..++
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~  228 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV  228 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred             CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence            5666666666666666656666677777777777765543  12223  566777777777776653211   1111111


Q ss_pred             hhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCc-ccccccccC
Q 003893          539 LHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIP-PQIGNLTKI  617 (788)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L  617 (788)
                                                                           +|++|++++|.+++..| ..+..+++|
T Consensus       229 -----------------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~~l~~L  255 (312)
T 1wwl_A          229 -----------------------------------------------------QLQGLDLSHNSLRDAAGAPSCDWPSQL  255 (312)
T ss_dssp             -----------------------------------------------------CCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred             -----------------------------------------------------CCCEEECCCCcCCcccchhhhhhcCCC
Confidence                                                                 57777777777776553 445556777


Q ss_pred             CeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcc
Q 003893          618 QTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG  677 (788)
Q Consensus       618 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~  677 (788)
                      ++|+|++|+++ .+|..+.  ++|++||+++|+|++. |. +..+++|++|++++|++++
T Consensus       256 ~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          256 NSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            77777777777 4555554  6777777777777754 44 6777777777777777764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=3e-24  Score=218.13  Aligned_cols=207  Identities=25%  Similarity=0.292  Sum_probs=155.6

Q ss_pred             ccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEcc
Q 003893          443 IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLS  522 (788)
Q Consensus       443 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  522 (788)
                      +++|++++|.+.+ ++...|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|+++
T Consensus        30 l~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           30 TKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             CCEEECTTCCCCE-ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             ccEEECCCCcccc-cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            4444444444432 333367777888888888888876666678888888888888888887777778888888888888


Q ss_pred             CCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCc
Q 003893          523 NNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNR  602 (788)
Q Consensus       523 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~  602 (788)
                      +|.+.+..+..+..+.                                                     +|++|++++|.
T Consensus       109 ~n~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~l~~n~  135 (276)
T 2z62_A          109 ETNLASLENFPIGHLK-----------------------------------------------------TLKELNVAHNL  135 (276)
T ss_dssp             TSCCCCSTTCCCTTCT-----------------------------------------------------TCCEEECCSSC
T ss_pred             CCCccccCchhcccCC-----------------------------------------------------CCCEEECcCCc
Confidence            8888766655554443                                                     78888888888


Q ss_pred             cccc-CcccccccccCCeEeCCCCCCCCCCCcccCCCCCCC----eeeCCCcccCccCchhhhcCCCCcEEecccCcCcc
Q 003893          603 LIGH-IPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIE----SLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG  677 (788)
Q Consensus       603 l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~  677 (788)
                      +++. +|..+..+++|++|++++|++++..+..|..+++|+    +|++++|++++..+..+. ..+|+.|++++|.+++
T Consensus       136 l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~  214 (276)
T 2z62_A          136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKS  214 (276)
T ss_dssp             CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSC
T ss_pred             cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceee
Confidence            8764 477888888888888888888877777777666666    788888888866555544 3478888888888887


Q ss_pred             cCCCCccccCCCCcCCcCCCCCCCCCC
Q 003893          678 KIPERAAQFATFNESSYEGNPFLCGPP  704 (788)
Q Consensus       678 ~~~~~~~~~~~l~~~~~~~Np~~C~~~  704 (788)
                      ..+..+..+++++.+++.+||+.|+|+
T Consensus       215 ~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          215 VPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             cCHhHhcccccccEEEccCCcccccCC
Confidence            777767788888888888888888886

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=1e-27  Score=272.96  Aligned_cols=82  Identities=13%  Similarity=0.067  Sum_probs=41.4

Q ss_pred             CCceEECCCCcccccCcccc-cccccCCeEeCCCCCCCCCCCc-ccCCCCCCCeeeCCCcccCccCchhh-hcCCCCcEE
Q 003893          592 LLSGLDLSCNRLIGHIPPQI-GNLTKIQTLNLSHNNLAGPIPS-TFSNLRNIESLDLSYNKLSWKIPYQL-VELNTLAVF  668 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L~~L  668 (788)
                      +|+.|++++|.+++..+..+ ..+++|+.|+|++|.+++.... ....+++|++|++++|+++......+ ..++.|+..
T Consensus       457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~  536 (594)
T 2p1m_B          457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVE  536 (594)
T ss_dssp             TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEE
T ss_pred             hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEE
Confidence            56666666666554333333 4456666666666666432222 23345666666666666643333333 334555444


Q ss_pred             ecccC
Q 003893          669 SVAYN  673 (788)
Q Consensus       669 ~l~~N  673 (788)
                      .+..+
T Consensus       537 ~~~~~  541 (594)
T 2p1m_B          537 VIDER  541 (594)
T ss_dssp             EECSS
T ss_pred             EecCC
Confidence            44433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=2e-27  Score=270.47  Aligned_cols=430  Identities=13%  Similarity=0.115  Sum_probs=216.6

Q ss_pred             hhHhhhcCCCCCEEeCCCCCCCCcccCCCCc------------cCCCCCCCEEEcCCCCCCCCccHhhh-cCCCCCEEeC
Q 003893           38 LQIIGESMPSIQYLSLSNSSVSNNSRTLDQG------------LCPLVHLQELHMADNDLRGSLPWCLA-NMTSLRILDV  104 (788)
Q Consensus        38 ~~~~~~~l~~L~~L~L~~~~l~~~~~~l~~~------------l~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L  104 (788)
                      +..+...+++|++|+++++.........|..            ...+++|++|+|++|.+++..+..+. .+++|++|++
T Consensus        58 ~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L  137 (594)
T 2p1m_B           58 PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL  137 (594)
T ss_dssp             HHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEE
T ss_pred             HHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeC
Confidence            3333334888888888887521111111111            23567788888888877766666665 6788888888


Q ss_pred             CCC-cCcCC-CChhhhcCCCCCCEEEcCCCcccCccC--c-cccCCCCCccEEEccCCc--cchhhhccccCCCCccccc
Q 003893          105 SSN-QLIGS-ISSSPLIHLTSIEDLILSDNHFQIPIS--L-EPLFNHSRLKIFDAENNE--INAEIIESHSLTTPNFQLQ  177 (788)
Q Consensus       105 s~n-~l~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~--~-~~l~~l~~L~~L~l~~n~--~~~~~~~~~~~~~~~~~L~  177 (788)
                      ++| .+.+. ++. .+.++++|++|++++|.+++...  . .....+++|+.|++++|.  +....              
T Consensus       138 ~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~--------------  202 (594)
T 2p1m_B          138 SSCEGFSTDGLAA-IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSA--------------  202 (594)
T ss_dssp             ESCEEEEHHHHHH-HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHH--------------
T ss_pred             CCcCCCCHHHHHH-HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHH--------------
Confidence            877 33321 222 33467888888888877653211  1 122356677777776664  11110              


Q ss_pred             EEEccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCc-------ccCcCccCccCCCCc
Q 003893          178 SLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDS-------LVGPFRLPIHSHKQL  250 (788)
Q Consensus       178 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------~~~~~~~~~~~~~~L  250 (788)
                                   +......+++|++|++++|...+.++. .+..+++|++|++..+.       +.+. +..+..+++|
T Consensus       203 -------------l~~l~~~~~~L~~L~L~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~l-~~~l~~~~~L  267 (594)
T 2p1m_B          203 -------------LERLVTRCPNLKSLKLNRAVPLEKLAT-LLQRAPQLEELGTGGYTAEVRPDVYSGL-SVALSGCKEL  267 (594)
T ss_dssp             -------------HHHHHHHCTTCCEEECCTTSCHHHHHH-HHHHCTTCSEEECSBCCCCCCHHHHHHH-HHHHHTCTTC
T ss_pred             -------------HHHHHHhCCCCcEEecCCCCcHHHHHH-HHhcCCcceEcccccccCccchhhHHHH-HHHHhcCCCc
Confidence                         111223467788888887743233333 34678888888865542       1111 2245567777


Q ss_pred             CEE-EccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCC-ccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEE
Q 003893          251 RLL-DVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIP-SSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLA  328 (788)
Q Consensus       251 ~~L-~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~  328 (788)
                      +.+ .+.+... +.++..+. .+++|++|++++|.+++... ..+..+++|++|++++| +.+.....+...+++|++|+
T Consensus       268 ~~Ls~~~~~~~-~~l~~~~~-~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~  344 (594)
T 2p1m_B          268 RCLSGFWDAVP-AYLPAVYS-VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELR  344 (594)
T ss_dssp             CEEECCBTCCG-GGGGGGHH-HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEE
T ss_pred             ccccCCcccch-hhHHHHHH-hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEE
Confidence            777 3433222 12332222 35677777777777543221 22456677777777766 33222233333467777777


Q ss_pred             ccc---------cccCcccccccc-CCCccCceeccCccCcccCCccCC-CCCCCcEEEcc--c----CcCCCCCC----
Q 003893          329 LSN---------NNLEGHMFSRNF-NLTNLIWLQLEGNHFVGEIPQSLS-KCSSLQGLFLS--N----NSLSGKIP----  387 (788)
Q Consensus       329 l~~---------n~i~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~--~----n~l~~~~~----  387 (788)
                      +.+         +.++......+. ++++|++|.+..+.++......+. .+++|+.|+++  +    +.++....    
T Consensus       345 L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~  424 (594)
T 2p1m_B          345 VFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF  424 (594)
T ss_dssp             EECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHH
T ss_pred             EecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHH
Confidence            733         223222111111 255566665555555433222222 35556666655  2    22221100    


Q ss_pred             -ccccCCCCccEEEccCCeeccCchhhhhc-ccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCccccccc
Q 003893          388 -RWLGNLTVLRHIIMPKNHIEGPIPLEFCQ-LRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNC  465 (788)
Q Consensus       388 -~~l~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  465 (788)
                       ..+..+++|+.|++++ .+++.....+.. +++|+.|++++|.+                       .+........++
T Consensus       425 ~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i-----------------------~~~~~~~l~~~~  480 (594)
T 2p1m_B          425 GAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGD-----------------------SDLGMHHVLSGC  480 (594)
T ss_dssp             HHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCS-----------------------SHHHHHHHHHHC
T ss_pred             HHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCC-----------------------cHHHHHHHHhcC
Confidence             0123344444444433 222222222222 34444444444433                       222222122456


Q ss_pred             ccccEEeCCCCccCCCCCc-cccCCcCCcEEEccCccCcccCcccc-cCCCCCCEEEccCC
Q 003893          466 LTLMILDLSYNHLNGNIPD-RVDGLSQLSYLILAHNNLEGEVPIQL-CRLNQLQLLDLSNN  524 (788)
Q Consensus       466 ~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n  524 (788)
                      ++|++|++++|.+++.... ....+++|++|++++|+++......+ ..+|+|+...+..+
T Consensus       481 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~  541 (594)
T 2p1m_B          481 DSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER  541 (594)
T ss_dssp             TTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred             CCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence            6777777777766432222 23446677777777776643322233 34566655555444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=4e-25  Score=242.41  Aligned_cols=248  Identities=21%  Similarity=0.194  Sum_probs=208.2

Q ss_pred             CCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEE
Q 003893          367 SKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQV  446 (788)
Q Consensus       367 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L  446 (788)
                      ..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+++              
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~--------------   94 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE--------------   94 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE--------------
T ss_pred             ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC--------------
Confidence            345689999999999998888899999999999999999987665  8889999999999998752              


Q ss_pred             EccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcC
Q 003893          447 HLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL  526 (788)
Q Consensus       447 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  526 (788)
                                     +...++|++|++++|.+++..+.   .+++|+.|++++|.+++..|..+..+++|++|++++|.+
T Consensus        95 ---------------l~~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  156 (487)
T 3oja_A           95 ---------------LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI  156 (487)
T ss_dssp             ---------------EEECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCC
T ss_pred             ---------------CCCCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCC
Confidence                           22237899999999999876543   468899999999999988888999999999999999999


Q ss_pred             CccCccccc-ccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccc
Q 003893          527 HGHIPSCFD-NTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIG  605 (788)
Q Consensus       527 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  605 (788)
                      ++.+|..+. .++                                                     +|+.|+|++|.+++
T Consensus       157 ~~~~~~~l~~~l~-----------------------------------------------------~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          157 DTVNFAELAASSD-----------------------------------------------------TLEHLNLQYNFIYD  183 (487)
T ss_dssp             CEEEGGGGGGGTT-----------------------------------------------------TCCEEECTTSCCCE
T ss_pred             CCcChHHHhhhCC-----------------------------------------------------cccEEecCCCcccc
Confidence            987776664 333                                                     89999999999997


Q ss_pred             cCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCc-ccCCCCcc
Q 003893          606 HIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS-GKIPERAA  684 (788)
Q Consensus       606 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~  684 (788)
                      ..+  +..+++|+.|+|++|++++..| .|..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|..+.
T Consensus       184 ~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~  259 (487)
T 3oja_A          184 VKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS  259 (487)
T ss_dssp             EEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred             ccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence            633  4468999999999999997555 48899999999999999995 6778889999999999999998 45555556


Q ss_pred             ccCCCCcCCcC-------CCCCCCCCCC
Q 003893          685 QFATFNESSYE-------GNPFLCGPPL  705 (788)
Q Consensus       685 ~~~~l~~~~~~-------~Np~~C~~~~  705 (788)
                      .++.+..+.+.       +||+.|.|+.
T Consensus       260 ~l~~L~~l~~~~~~~~~~~~~~~c~~~~  287 (487)
T 3oja_A          260 KNQRVQTVAKQTVKKLTGQNEEECTVPT  287 (487)
T ss_dssp             TCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred             hCCCCcEEeccccccccCCCcccccCCc
Confidence            66666655654       8999998864

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=8.1e-26  Score=233.78  Aligned_cols=250  Identities=26%  Similarity=0.273  Sum_probs=143.4

Q ss_pred             cccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCcc-cccccc-------CCCccCceeccCccCcccCC
Q 003893          292 SFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGH-MFSRNF-------NLTNLIWLQLEGNHFVGEIP  363 (788)
Q Consensus       292 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~-------~l~~L~~L~l~~n~~~~~~~  363 (788)
                      .++..++|+.|++++|.+  .+|..+...   |+.|++++|.+... .+..+.       ++++|++|++++|.+.+..|
T Consensus        38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  112 (312)
T 1wwl_A           38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP  112 (312)
T ss_dssp             EEEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred             EEccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence            345567788888888888  677776642   77778888877432 222222       45666666666666665555


Q ss_pred             ccC--CCCCCCcEEEcccCcCCCCCCccccCC-----CCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCC
Q 003893          364 QSL--SKCSSLQGLFLSNNSLSGKIPRWLGNL-----TVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPS  436 (788)
Q Consensus       364 ~~~--~~l~~L~~L~l~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  436 (788)
                      ..+  ..+++|++|++++|.+++. |..+..+     ++|++|++++|.+.+..+..+..++                  
T Consensus       113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~------------------  173 (312)
T 1wwl_A          113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP------------------  173 (312)
T ss_dssp             CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS------------------
T ss_pred             HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC------------------
Confidence            544  5566666666666666544 4444333     4444444444444443334444444                  


Q ss_pred             CCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCC--CCccc--cCCcCCcEEEccCccCcc---cCccc
Q 003893          437 CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGN--IPDRV--DGLSQLSYLILAHNNLEG---EVPIQ  509 (788)
Q Consensus       437 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~--~~~~~--~~l~~L~~L~L~~n~l~~---~~~~~  509 (788)
                                                    +|++|++++|++.+.  .+..+  ..+++|++|++++|++++   .....
T Consensus       174 ------------------------------~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  223 (312)
T 1wwl_A          174 ------------------------------ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL  223 (312)
T ss_dssp             ------------------------------SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred             ------------------------------CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence                                          444444444443321  11111  445555555555555542   11123


Q ss_pred             ccCCCCCCEEEccCCcCCccCcc-cccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCC
Q 003893          510 LCRLNQLQLLDLSNNNLHGHIPS-CFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGR  588 (788)
Q Consensus       510 ~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~  588 (788)
                      +..+++|++|++++|++++..|. .+..+                                                   
T Consensus       224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l---------------------------------------------------  252 (312)
T 1wwl_A          224 AAARVQLQGLDLSHNSLRDAAGAPSCDWP---------------------------------------------------  252 (312)
T ss_dssp             HHTTCCCSEEECTTSCCCSSCCCSCCCCC---------------------------------------------------
T ss_pred             HhcCCCCCEEECCCCcCCcccchhhhhhc---------------------------------------------------
Confidence            34556666666666666654421 11111                                                   


Q ss_pred             ccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCc
Q 003893          589 VPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW  653 (788)
Q Consensus       589 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  653 (788)
                        ++|++|++++|.++ .+|..+.  ++|++|+|++|++++. |. +..+++|++|++++|++++
T Consensus       253 --~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          253 --SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             --TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             --CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence              26777777777776 5555554  7788888888888765 54 7778888888888888764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=8.8e-24  Score=215.23  Aligned_cols=208  Identities=25%  Similarity=0.233  Sum_probs=143.1

Q ss_pred             hhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCc
Q 003893          414 FCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLS  493 (788)
Q Consensus       414 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~  493 (788)
                      +..+++++.++++++.++.                        +|. .+  .+.+++|++++|.+++..+..|..+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~------------------------ip~-~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~   58 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTA------------------------LPP-DL--PKDTTILHLSENLLYTFSLATLMPYTRLT   58 (290)
T ss_dssp             EECSTTCCEEECTTSCCSS------------------------CCS-CC--CTTCCEEECTTSCCSEEEGGGGTTCTTCC
T ss_pred             ccccCCccEEECCCCCCCc------------------------CCC-CC--CCCCCEEEcCCCcCCccCHHHhhcCCCCC
Confidence            3456667777777776653                        222 11  14567777777777666666677777777


Q ss_pred             EEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccc
Q 003893          494 YLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILES  573 (788)
Q Consensus       494 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  573 (788)
                      +|++++|.+++..+  ...+++|++|++++|+++.. |..+..+.                                   
T Consensus        59 ~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~-----------------------------------  100 (290)
T 1p9a_G           59 QLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQSL-PLLGQTLP-----------------------------------  100 (290)
T ss_dssp             EEECTTSCCCEEEC--CSCCTTCCEEECCSSCCSSC-CCCTTTCT-----------------------------------
T ss_pred             EEECCCCccCcccC--CCCCCcCCEEECCCCcCCcC-chhhccCC-----------------------------------
Confidence            77777777764332  25677777777777777632 33332222                                   


Q ss_pred             eEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCc
Q 003893          574 FDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW  653 (788)
Q Consensus       574 l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  653 (788)
                                        +|++|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|++++|+++.
T Consensus       101 ------------------~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  162 (290)
T 1p9a_G          101 ------------------ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (290)
T ss_dssp             ------------------TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             ------------------CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence                              67777777777776666777778888888888888887777777778888888888888876


Q ss_pred             cCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCCCCCC
Q 003893          654 KIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL  705 (788)
Q Consensus       654 ~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~  705 (788)
                      ..+..|..+++|+.|++++|+++ .+|..+.....++.+.+.+|||.|+|+.
T Consensus       163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~~  213 (290)
T 1p9a_G          163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (290)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCcc
Confidence            55556677788888888888887 4555556666777788888888888763

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.8e-23  Score=212.40  Aligned_cols=208  Identities=24%  Similarity=0.295  Sum_probs=116.7

Q ss_pred             CccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCC
Q 003893          395 VLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLS  474 (788)
Q Consensus       395 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~  474 (788)
                      +|++|++++|.+.+..+..|.++++|++|++++|.+.+                        ++...|.++++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------------~~~~~~~~l~~L~~L~L~   84 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT------------------------IEDGAYQSLSHLSTLILT   84 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE------------------------ECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc------------------------cCHHHccCCcCCCEEECC
Confidence            34445555544444444444455555555555554431                        122234445555555555


Q ss_pred             CCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCcc-CcccccccchhhhccCCCCCCCcc
Q 003893          475 YNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGH-IPSCFDNTTLHERYNNGSSLQPFE  553 (788)
Q Consensus       475 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~  553 (788)
                      +|.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .|..+..++               
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~---------------  149 (276)
T 2z62_A           85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT---------------  149 (276)
T ss_dssp             TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT---------------
T ss_pred             CCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCC---------------
Confidence            5555544444555555555555555555544444455555555555555555543 244443333               


Q ss_pred             cceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCC----eEeCCCCCCCC
Q 003893          554 TSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQ----TLNLSHNNLAG  629 (788)
Q Consensus       554 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~Ls~N~l~~  629 (788)
                                                            +|++|++++|++++..+..+..+++|+    .|++++|++++
T Consensus       150 --------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~  191 (276)
T 2z62_A          150 --------------------------------------NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF  191 (276)
T ss_dssp             --------------------------------------TCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCE
T ss_pred             --------------------------------------CCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccc
Confidence                                                  556666666666655555565555555    67777777775


Q ss_pred             CCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCC
Q 003893          630 PIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIP  680 (788)
Q Consensus       630 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  680 (788)
                      ..+..+.. .+|++|++++|++++..+..+..+++|+.|++++|+++|..|
T Consensus       192 ~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          192 IQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             ECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             cCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            55544443 467777777777776555566777777777777777776655

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.7e-22  Score=204.19  Aligned_cols=167  Identities=25%  Similarity=0.253  Sum_probs=120.9

Q ss_pred             cccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchh
Q 003893          461 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLH  540 (788)
Q Consensus       461 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~  540 (788)
                      .|.++++|++|++++|.++...+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..++  
T Consensus        56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--  133 (270)
T 2o6q_A           56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT--  133 (270)
T ss_dssp             SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT--
T ss_pred             HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc--
Confidence            555666666666666666655555556666677777776666655555566677777777777777666555554443  


Q ss_pred             hhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeE
Q 003893          541 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTL  620 (788)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  620 (788)
                                                                         +|++|++++|.+++..+..|..+++|+.|
T Consensus       134 ---------------------------------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  162 (270)
T 2o6q_A          134 ---------------------------------------------------KLTYLSLGYNELQSLPKGVFDKLTSLKEL  162 (270)
T ss_dssp             ---------------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ---------------------------------------------------CCCEEECCCCcCCccCHhHccCCccccee
Confidence                                                               67777777777776666667888888888


Q ss_pred             eCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCC
Q 003893          621 NLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIP  680 (788)
Q Consensus       621 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  680 (788)
                      +|++|++++..+..|..+++|++|++++|+++...+..+..+++|+.|++++|++.+..+
T Consensus       163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            888888887777778888888888888888887666677888888888888888887654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=2e-22  Score=203.77  Aligned_cols=209  Identities=24%  Similarity=0.281  Sum_probs=164.6

Q ss_pred             cCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccE
Q 003893          391 GNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMI  470 (788)
Q Consensus       391 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  470 (788)
                      ..+++|+.|++++|.+...  ..+..+++|++|++++|.+.                       + ++  .+..+++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~-----------------------~-~~--~l~~l~~L~~   89 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-----------------------D-IS--ALKELTNLTY   89 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCC-----------------------C-CG--GGTTCTTCCE
T ss_pred             ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCC-----------------------C-ch--hhcCCCCCCE
Confidence            3455556666665555422  23455555555555555543                       2 22  5778889999


Q ss_pred             EeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCC
Q 003893          471 LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQ  550 (788)
Q Consensus       471 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~  550 (788)
                      |++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..++            
T Consensus        90 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------------  157 (272)
T 3rfs_A           90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT------------  157 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------------
T ss_pred             EECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc------------
Confidence            99999999887777788899999999999999877777788999999999999999877776665554            


Q ss_pred             CcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCC
Q 003893          551 PFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGP  630 (788)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  630 (788)
                                                               +|+.|++++|++++..+..+..+++|+.|++++|++++.
T Consensus       158 -----------------------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (272)
T 3rfs_A          158 -----------------------------------------NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV  196 (272)
T ss_dssp             -----------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             -----------------------------------------cCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence                                                     799999999999988888889999999999999999988


Q ss_pred             CCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccC
Q 003893          631 IPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFA  687 (788)
Q Consensus       631 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~  687 (788)
                      .+..|..+++|++|++++|++.+.       +++|+.++++.|.++|.+|..++.+.
T Consensus       197 ~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          197 PDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             CHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence            888899999999999999998754       45788899999999999988655443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=5.9e-22  Score=201.70  Aligned_cols=205  Identities=23%  Similarity=0.191  Sum_probs=118.4

Q ss_pred             CCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccE
Q 003893          366 LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQ  445 (788)
Q Consensus       366 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~  445 (788)
                      +..++++++++++++.++ .+|..+.  ++++.|++++|.+.+..+..|..+++|+.|++++|.+++             
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------------   69 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-------------   69 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-------------
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-------------
Confidence            445666777777777766 3343332  466666666666666556666666666666666665541             


Q ss_pred             EEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCc
Q 003893          446 VHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNN  525 (788)
Q Consensus       446 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  525 (788)
                                 ++.  ...+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|++    
T Consensus        70 -----------~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L----  131 (290)
T 1p9a_G           70 -----------LQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL----  131 (290)
T ss_dssp             -----------EEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC----
T ss_pred             -----------ccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEEC----
Confidence                       111  134455666666666655 34444555555555555555555444444555555555554    


Q ss_pred             CCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccc
Q 003893          526 LHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIG  605 (788)
Q Consensus       526 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  605 (788)
                                                                                               ++|++++
T Consensus       132 -------------------------------------------------------------------------~~N~l~~  138 (290)
T 1p9a_G          132 -------------------------------------------------------------------------KGNELKT  138 (290)
T ss_dssp             -------------------------------------------------------------------------TTSCCCC
T ss_pred             -------------------------------------------------------------------------CCCCCCc
Confidence                                                                                     4454444


Q ss_pred             cCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCccc
Q 003893          606 HIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGK  678 (788)
Q Consensus       606 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  678 (788)
                      ..+..|..+++|+.|+|++|++++..+..|..+++|++|++++|+++ .+|..+....+|+.+++++|++.+.
T Consensus       139 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence            44445555666666666666666555555566666666666666666 4555555566666666666666653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=7.9e-22  Score=196.88  Aligned_cols=180  Identities=26%  Similarity=0.252  Sum_probs=108.9

Q ss_pred             cccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEc
Q 003893          442 CIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDL  521 (788)
Q Consensus       442 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  521 (788)
                      ..++++++++.+. .+|. .+.  +.++.|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus        15 ~~~~l~~~~~~l~-~~p~-~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPS-GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCS-SCCS-CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCeEEecCCCCcc-ccCC-CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            3455666666554 3333 121  45666666666666655556666666666666666666555555666666666666


Q ss_pred             cCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCC
Q 003893          522 SNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCN  601 (788)
Q Consensus       522 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n  601 (788)
                      ++|++++..+..|..+.                                                     +|++|++++|
T Consensus        91 ~~n~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~L~~N  117 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLT-----------------------------------------------------QLDKLYLGGN  117 (251)
T ss_dssp             TTSCCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCSS
T ss_pred             CCCcccccChhHhcccC-----------------------------------------------------CCCEEEcCCC
Confidence            66666655554444433                                                     5666666666


Q ss_pred             cccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCccc
Q 003893          602 RLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGK  678 (788)
Q Consensus       602 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  678 (788)
                      ++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++++.
T Consensus       118 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            66655555556666666666666666655555566666666666666666655555566666666666666666654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=1.3e-21  Score=197.87  Aligned_cols=202  Identities=22%  Similarity=0.251  Sum_probs=108.0

Q ss_pred             CcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccC
Q 003893          420 LQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAH  499 (788)
Q Consensus       420 L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~  499 (788)
                      +..+++..+.+... .....++.++.|.+.+|.+.. ++  .+..+++|++|++++|.+++.  ..+..+++|++|++++
T Consensus        21 l~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~-~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~   94 (272)
T 3rfs_A           21 TIKANLKKKSVTDA-VTQNELNSIDQIIANNSDIKS-VQ--GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG   94 (272)
T ss_dssp             HHHHHHTCSCTTSE-ECHHHHTTCCEEECTTSCCCC-CT--TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred             HHHHHhcCcccccc-cccccccceeeeeeCCCCccc-cc--ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence            33445555544321 111224555566666555432 22  345555666666666655532  2455555666666666


Q ss_pred             ccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeec
Q 003893          500 NNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTK  579 (788)
Q Consensus       500 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~  579 (788)
                      |.+++..+..+..+++|++|++++|++++..+..+..+.                                         
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----------------------------------------  133 (272)
T 3rfs_A           95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT-----------------------------------------  133 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-----------------------------------------
T ss_pred             CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC-----------------------------------------
Confidence            665554444555556666666666655555444443333                                         


Q ss_pred             CceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhh
Q 003893          580 SITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQL  659 (788)
Q Consensus       580 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  659 (788)
                                  +|++|++++|.+++..+..+..+++|+.|++++|++++..+..|..+++|++|++++|++++..+..+
T Consensus       134 ------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  201 (272)
T 3rfs_A          134 ------------NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF  201 (272)
T ss_dssp             ------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             ------------CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHH
Confidence                        55556666665555555555555566666666665555555555555566666666666555555555


Q ss_pred             hcCCCCcEEecccCcCcccCC
Q 003893          660 VELNTLAVFSVAYNNLSGKIP  680 (788)
Q Consensus       660 ~~l~~L~~L~l~~N~l~~~~~  680 (788)
                      ..+++|+.|++++|++.|..|
T Consensus       202 ~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          202 DRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             TTCTTCCEEECCSSCBCCCTT
T ss_pred             hCCcCCCEEEccCCCccccCc
Confidence            555556666666655554443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=1.2e-20  Score=188.30  Aligned_cols=181  Identities=23%  Similarity=0.267  Sum_probs=127.0

Q ss_pred             ccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccC
Q 003893          466 LTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNN  545 (788)
Q Consensus       466 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~  545 (788)
                      ...++++++++.++ .+|..+.  ++++.|++++|.+.+..+..+.++++|++|++++|.+++..+..|..+.       
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------   83 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT-------   83 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-------
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC-------
Confidence            34567777777776 3444433  4677777777777766666677777777777777777766665555444       


Q ss_pred             CCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCC
Q 003893          546 GSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN  625 (788)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  625 (788)
                                                                    +|++|++++|.+++..+..|..+++|++|+|++|
T Consensus        84 ----------------------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  117 (251)
T 3m19_A           84 ----------------------------------------------ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN  117 (251)
T ss_dssp             ----------------------------------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ----------------------------------------------cCCEEECCCCcccccChhHhcccCCCCEEEcCCC
Confidence                                                          6777777777777666666777777777777777


Q ss_pred             CCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCCC
Q 003893          626 NLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCG  702 (788)
Q Consensus       626 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~  702 (788)
                      ++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..+++++.+++.+||+.|+
T Consensus       118 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            77766666667777777777777777766555677777777777777777776666666777777777777777776

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=2.1e-22  Score=212.85  Aligned_cols=87  Identities=18%  Similarity=0.231  Sum_probs=49.8

Q ss_pred             CCceEECCCCccccc----Ccccccc-cccCCeEeCCCCCCCCCCC----cccCCCCCCCeeeCCCcccCccCc------
Q 003893          592 LLSGLDLSCNRLIGH----IPPQIGN-LTKIQTLNLSHNNLAGPIP----STFSNLRNIESLDLSYNKLSWKIP------  656 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~----~~~~~~~-l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~------  656 (788)
                      +|++|+|++|.+++.    ++..+.. .++|++|+|++|++++..+    ..+..+++|++|++++|.+....+      
T Consensus       197 ~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l  276 (362)
T 3goz_A          197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL  276 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH
T ss_pred             CCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH
Confidence            566666666666542    2333333 2467777777776665433    234556667777777776443222      


Q ss_pred             -hhhhcCCCCcEEecccCcCccc
Q 003893          657 -YQLVELNTLAVFSVAYNNLSGK  678 (788)
Q Consensus       657 -~~l~~l~~L~~L~l~~N~l~~~  678 (788)
                       ..+..+++|+.||+++|++...
T Consensus       277 ~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          277 GAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHhccCCceEEEecCCCcCCCc
Confidence             2445556677777777776654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=5.1e-21  Score=189.59  Aligned_cols=131  Identities=18%  Similarity=0.187  Sum_probs=61.1

Q ss_pred             CCcEEEcccCcCCCCCCccccCCCCccEEEccCCe-eccCchhhhhcccCCcEEeccC-CcCCCCCCCCCCCCcccEEEc
Q 003893          371 SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNH-IEGPIPLEFCQLRILQILDISD-NNISGSLPSCYDFVCIEQVHL  448 (788)
Q Consensus       371 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~L~~L~l  448 (788)
                      ++++|++++|.+++..+..+.++++|++|++++|. +.+..+..|.++++|++|++++ |.++                 
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-----------------   94 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-----------------   94 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-----------------
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-----------------
Confidence            45555555555544433344444445555554443 4433333444444444444444 4433                 


Q ss_pred             cCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCc---EEEccCc-cCcccCcccccCCCCCC-EEEccC
Q 003893          449 SKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLS---YLILAHN-NLEGEVPIQLCRLNQLQ-LLDLSN  523 (788)
Q Consensus       449 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~L~~  523 (788)
                             .++...|.++++|++|++++|++++ +|. +..+++|+   +|++++| .+++..+..|.++++|+ +|++++
T Consensus        95 -------~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~  165 (239)
T 2xwt_C           95 -------YIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN  165 (239)
T ss_dssp             -------EECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS
T ss_pred             -------EcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC
Confidence                   1222244445555555555555543 332 44444444   5555555 44444444444455555 555555


Q ss_pred             CcCC
Q 003893          524 NNLH  527 (788)
Q Consensus       524 n~l~  527 (788)
                      |+++
T Consensus       166 n~l~  169 (239)
T 2xwt_C          166 NGFT  169 (239)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            4444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=4.2e-21  Score=190.23  Aligned_cols=196  Identities=17%  Similarity=0.224  Sum_probs=124.4

Q ss_pred             CccEEEccCCeeccCchhhhhcccCCcEEeccCCc-CCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeC
Q 003893          395 VLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNN-ISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDL  473 (788)
Q Consensus       395 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l  473 (788)
                      ++++|++++|.+++..+..|.++++|++|++++|+ +.                        .++...|.++++|++|++
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~------------------------~i~~~~f~~l~~L~~L~l   87 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ------------------------QLESHSFYNLSKVTHIEI   87 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC------------------------EECTTTEESCTTCCEEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc------------------------eeCHhHcCCCcCCcEEEC
Confidence            56666666666665555556666666666666664 43                        333346677777777777


Q ss_pred             CC-CccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCC---EEEccCC-cCCccCcccccccchhhhccCCCC
Q 003893          474 SY-NHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQ---LLDLSNN-NLHGHIPSCFDNTTLHERYNNGSS  548 (788)
Q Consensus       474 ~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~~~~~~~~~~~~~  548 (788)
                      ++ |.+++..+..|.++++|++|++++|++++ +|. +..+++|+   +|++++| .+++..+..|..+.          
T Consensus        88 ~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~----------  155 (239)
T 2xwt_C           88 RNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC----------  155 (239)
T ss_dssp             EEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB----------
T ss_pred             CCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchh----------
Confidence            77 77776666677777777777777777764 443 66666666   7777777 66665555554443          


Q ss_pred             CCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCc-eEECCCCcccccCcccccccccCCeEeCCCCC-
Q 003893          549 LQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLS-GLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNN-  626 (788)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-  626 (788)
                                                                 +|+ +|++++|+++...+..+.. ++|+.|++++|+ 
T Consensus       156 -------------------------------------------~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~  191 (239)
T 2xwt_C          156 -------------------------------------------NETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKY  191 (239)
T ss_dssp             -------------------------------------------SSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTT
T ss_pred             -------------------------------------------cceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCC
Confidence                                                       566 6777777766444444444 667777777773 


Q ss_pred             CCCCCCcccCCC-CCCCeeeCCCcccCccCchhhhcCCCCcEEecccC
Q 003893          627 LAGPIPSTFSNL-RNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYN  673 (788)
Q Consensus       627 l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N  673 (788)
                      +++..+..|..+ ++|++|++++|+++...+ .  .+++|+.|+++++
T Consensus       192 l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~-~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          192 LTVIDKDAFGGVYSGPSLLDVSQTSVTALPS-K--GLEHLKELIARNT  236 (239)
T ss_dssp             CCEECTTTTTTCSBCCSEEECTTCCCCCCCC-T--TCTTCSEEECTTC
T ss_pred             cccCCHHHhhccccCCcEEECCCCccccCCh-h--HhccCceeeccCc
Confidence            665556666666 677777777777664332 2  4456666666654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=6.7e-21  Score=196.71  Aligned_cols=202  Identities=22%  Similarity=0.257  Sum_probs=122.1

Q ss_pred             ccCCcEEeccCCcCCCCCCCC---CCCCcccEEEccCcccccccC---cccccccccccEEeCCCCccCCCCCccccCCc
Q 003893          417 LRILQILDISDNNISGSLPSC---YDFVCIEQVHLSKNMLHGQLK---EGTFFNCLTLMILDLSYNHLNGNIPDRVDGLS  490 (788)
Q Consensus       417 l~~L~~L~l~~n~~~~~~~~~---~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~  490 (788)
                      +++|++|++++|.+.+..+..   ..+++|++|++++|.+.+..+   ...+..+++|++|++++|++.+..+..+..++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            344555555555555444432   224444444444444443222   12334677777888888777766667777777


Q ss_pred             CCcEEEccCccCccc--C--cccccCCCCCCEEEccCCcCCccCcc---cccccchhhhccCCCCCCCcccceeecCCcc
Q 003893          491 QLSYLILAHNNLEGE--V--PIQLCRLNQLQLLDLSNNNLHGHIPS---CFDNTTLHERYNNGSSLQPFETSFVIMGGMD  563 (788)
Q Consensus       491 ~L~~L~L~~n~l~~~--~--~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  563 (788)
                      +|++|++++|++.+.  .  +..+..+++|++|++++|.++...+.   .+..+.                         
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~-------------------------  224 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV-------------------------  224 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC-------------------------
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC-------------------------
Confidence            788888887776532  1  22235677777777777777532221   111211                         


Q ss_pred             cCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCccccccc---ccCCeEeCCCCCCCCCCCcccCCCCC
Q 003893          564 VDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNL---TKIQTLNLSHNNLAGPIPSTFSNLRN  640 (788)
Q Consensus       564 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~  640 (788)
                                                  +|++|++++|++++..|..+..+   ++|++|+|++|+++ .+|..+.  ++
T Consensus       225 ----------------------------~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~  273 (310)
T 4glp_A          225 ----------------------------QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AK  273 (310)
T ss_dssp             ----------------------------CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SC
T ss_pred             ----------------------------CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CC
Confidence                                        67777777777776666666555   57777777777777 4455543  67


Q ss_pred             CCeeeCCCcccCccCchhhhcCCCCcEEecccCcCc
Q 003893          641 IESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLS  676 (788)
Q Consensus       641 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~  676 (788)
                      |++|++++|++++. |. +..+++|+.|++++|+++
T Consensus       274 L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          274 LRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred             CCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence            77777777777743 32 456677777777777765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.84  E-value=3.9e-22  Score=210.81  Aligned_cols=269  Identities=21%  Similarity=0.185  Sum_probs=138.2

Q ss_pred             EEccCCcCCCccchHHhhCCCCCcEEEccccccCcccc----ccccCCC-ccCceeccCccCcccCCccCCCCCCCcEEE
Q 003893          302 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMF----SRNFNLT-NLIWLQLEGNHFVGEIPQSLSKCSSLQGLF  376 (788)
Q Consensus       302 L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  376 (788)
                      ++++.|.+++.+|... ...++|++|++++|.++...+    ..+..++ +|++|++++|.+.+..+..+..+       
T Consensus         3 ~~ls~n~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-------   74 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFT-SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI-------   74 (362)
T ss_dssp             EECCCCTTCCHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH-------
T ss_pred             cccccccchHHHHHHH-hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH-------
Confidence            4566666664444433 233446666666666655444    3344444 45555555555544333333322       


Q ss_pred             cccCcCCCCCCccccC-CCCccEEEccCCeeccCchhhhh----cc-cCCcEEeccCCcCCCCCCCCCCCCcccEEEccC
Q 003893          377 LSNNSLSGKIPRWLGN-LTVLRHIIMPKNHIEGPIPLEFC----QL-RILQILDISDNNISGSLPSCYDFVCIEQVHLSK  450 (788)
Q Consensus       377 l~~n~l~~~~~~~l~~-l~~L~~L~l~~n~~~~~~~~~~~----~l-~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~  450 (788)
                                   +.. .++|++|++++|.+.+..+..+.    .+ ++|++|++++|.+.+..+..             
T Consensus        75 -------------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~-------------  128 (362)
T 3goz_A           75 -------------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE-------------  128 (362)
T ss_dssp             -------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH-------------
T ss_pred             -------------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH-------------
Confidence                         000 14444444444444443333222    22 45555555555543221100             


Q ss_pred             cccccccCcccccc-cccccEEeCCCCccCCCCCc----cccCCc-CCcEEEccCccCcccCccc----ccCC-CCCCEE
Q 003893          451 NMLHGQLKEGTFFN-CLTLMILDLSYNHLNGNIPD----RVDGLS-QLSYLILAHNNLEGEVPIQ----LCRL-NQLQLL  519 (788)
Q Consensus       451 n~~~~~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~----~~~~l~-~L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L  519 (788)
                            +. ..+.. .++|++|++++|.+++..+.    .+..++ +|++|++++|++++..+..    +..+ ++|++|
T Consensus       129 ------l~-~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L  201 (362)
T 3goz_A          129 ------FK-QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSL  201 (362)
T ss_dssp             ------HH-HHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred             ------HH-HHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEE
Confidence                  00 01222 23566666666665533222    223333 6666666666666544432    3334 377777


Q ss_pred             EccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECC
Q 003893          520 DLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLS  599 (788)
Q Consensus       520 ~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls  599 (788)
                      ++++|.+.+.....+...-                                                ...+++|++|+++
T Consensus       202 ~Ls~N~i~~~~~~~l~~~l------------------------------------------------~~~~~~L~~L~Ls  233 (362)
T 3goz_A          202 DLSANLLGLKSYAELAYIF------------------------------------------------SSIPNHVVSLNLC  233 (362)
T ss_dssp             ECTTSCGGGSCHHHHHHHH------------------------------------------------HHSCTTCCEEECC
T ss_pred             ECCCCCCChhHHHHHHHHH------------------------------------------------hcCCCCceEEECc
Confidence            7777776643222111100                                                0112367777777


Q ss_pred             CCcccccCc----ccccccccCCeEeCCCCCCCCCCC-------cccCCCCCCCeeeCCCcccCccCchhh
Q 003893          600 CNRLIGHIP----PQIGNLTKIQTLNLSHNNLAGPIP-------STFSNLRNIESLDLSYNKLSWKIPYQL  659 (788)
Q Consensus       600 ~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~-------~~~~~l~~L~~L~Ls~N~l~~~~~~~l  659 (788)
                      +|.+++..+    ..+..+++|+.|+|++|.+.+..+       ..+..+++|+.||+++|++....+..+
T Consensus       234 ~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~  304 (362)
T 3goz_A          234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI  304 (362)
T ss_dssp             SSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred             CCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence            777765443    334566778888888887554333       356778888889999998876644443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=1.6e-22  Score=216.09  Aligned_cols=89  Identities=19%  Similarity=0.284  Sum_probs=67.1

Q ss_pred             CCceEECCCCccc----ccCcccccccccCCeEeCCCCCCCCC----CCcccC--CCCCCCeeeCCCcccCc----cCch
Q 003893          592 LLSGLDLSCNRLI----GHIPPQIGNLTKIQTLNLSHNNLAGP----IPSTFS--NLRNIESLDLSYNKLSW----KIPY  657 (788)
Q Consensus       592 ~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~--~l~~L~~L~Ls~N~l~~----~~~~  657 (788)
                      +|+.|+|++|.++    ..+|..+..+++|+.|+|++|++++.    ++..+.  .+++|++|+|++|.++.    .+|.
T Consensus       217 ~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~  296 (386)
T 2ca6_A          217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT  296 (386)
T ss_dssp             TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH
T ss_pred             CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH
Confidence            6777777777775    45667778888888888888888754    355553  37888888888888886    3676


Q ss_pred             hh-hcCCCCcEEecccCcCcccCC
Q 003893          658 QL-VELNTLAVFSVAYNNLSGKIP  680 (788)
Q Consensus       658 ~l-~~l~~L~~L~l~~N~l~~~~~  680 (788)
                      .+ .++++|+.|++++|++++..+
T Consensus       297 ~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          297 VIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHhcCCCceEEEccCCcCCcchh
Confidence            66 557888888888888887653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=3.9e-20  Score=190.30  Aligned_cols=194  Identities=23%  Similarity=0.301  Sum_probs=135.6

Q ss_pred             CCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEE
Q 003893          392 NLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMIL  471 (788)
Q Consensus       392 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  471 (788)
                      .+++|++|++++|.+... + .+..+++|++|++++|.+.+                        ++.  +..+++|++|
T Consensus        39 ~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~------------------------~~~--~~~l~~L~~L   90 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITD------------------------LAP--LKNLTKITEL   90 (308)
T ss_dssp             HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC------------------------CGG--GTTCCSCCEE
T ss_pred             HcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCC------------------------Chh--HccCCCCCEE
Confidence            455566666666655532 2 35555666666666665542                        222  6677788888


Q ss_pred             eCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCC
Q 003893          472 DLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQP  551 (788)
Q Consensus       472 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~  551 (788)
                      ++++|.+++.  ..+..+++|++|++++|.+++. + .+..+++|++|++++|.+++..+  +..+.             
T Consensus        91 ~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~-------------  151 (308)
T 1h6u_A           91 ELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLT-------------  151 (308)
T ss_dssp             ECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCT-------------
T ss_pred             EccCCcCCCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCC-------------
Confidence            8888887743  3577788888888888887743 3 37778888888888888775543  33322             


Q ss_pred             cccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCC
Q 003893          552 FETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPI  631 (788)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  631 (788)
                                                              +|+.|++++|.+++..+  +..+++|+.|++++|++++..
T Consensus       152 ----------------------------------------~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~  189 (308)
T 1h6u_A          152 ----------------------------------------NLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDIS  189 (308)
T ss_dssp             ----------------------------------------TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred             ----------------------------------------CccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcCh
Confidence                                                    68888888888875433  778888888888888888654


Q ss_pred             CcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCccc
Q 003893          632 PSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGK  678 (788)
Q Consensus       632 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  678 (788)
                      +  +..+++|++|++++|++++..  .+..+++|+.|++++|++++.
T Consensus       190 ~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          190 P--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             G--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred             h--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence            3  778888888888888888544  377888888888888888763

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=1.3e-21  Score=205.16  Aligned_cols=234  Identities=15%  Similarity=0.140  Sum_probs=135.4

Q ss_pred             CCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccC-chhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEc
Q 003893          370 SSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGP-IPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHL  448 (788)
Q Consensus       370 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l  448 (788)
                      +.++.|++++|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+                
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~----------------  132 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD----------------  132 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH----------------
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH----------------
Confidence            4555555555555544333 33456666666666665543 45555666666666666665432                


Q ss_pred             cCcccccccCcccccccccccEEeCCCC-ccCCC-CCccccCCcCCcEEEccCc-cCccc-CcccccCCC-CCCEEEccC
Q 003893          449 SKNMLHGQLKEGTFFNCLTLMILDLSYN-HLNGN-IPDRVDGLSQLSYLILAHN-NLEGE-VPIQLCRLN-QLQLLDLSN  523 (788)
Q Consensus       449 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n-~i~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~L~~  523 (788)
                             ..+. .+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. .+..+..++ +|++|++++
T Consensus       133 -------~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~  204 (336)
T 2ast_B          133 -------PIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  204 (336)
T ss_dssp             -------HHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             -------HHHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence                   1111 3445566666666666 34431 3344555666666666666 56533 344556666 777777777


Q ss_pred             Cc--CC-ccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCC
Q 003893          524 NN--LH-GHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSC  600 (788)
Q Consensus       524 n~--l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~  600 (788)
                      |.  ++ +..+..+..++                                                     +|++|++++
T Consensus       205 ~~~~~~~~~l~~~~~~~~-----------------------------------------------------~L~~L~l~~  231 (336)
T 2ast_B          205 YRKNLQKSDLSTLVRRCP-----------------------------------------------------NLVHLDLSD  231 (336)
T ss_dssp             CGGGSCHHHHHHHHHHCT-----------------------------------------------------TCSEEECTT
T ss_pred             CcccCCHHHHHHHHhhCC-----------------------------------------------------CCCEEeCCC
Confidence            63  33 22222222222                                                     677777777


Q ss_pred             Cc-ccccCcccccccccCCeEeCCCCC-CCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCccc
Q 003893          601 NR-LIGHIPPQIGNLTKIQTLNLSHNN-LAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGK  678 (788)
Q Consensus       601 n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  678 (788)
                      |. +++..+..+..+++|++|++++|. +.......+..+++|++|++++| ++...-..+.  .++..|++++|.+++.
T Consensus       232 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~  308 (336)
T 2ast_B          232 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTI  308 (336)
T ss_dssp             CTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCT
T ss_pred             CCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccc
Confidence            77 555666677788888888888885 22111125677888888888888 4432222222  2355566888888887


Q ss_pred             CCCCcc
Q 003893          679 IPERAA  684 (788)
Q Consensus       679 ~~~~~~  684 (788)
                      .|..+.
T Consensus       309 ~~~~~~  314 (336)
T 2ast_B          309 ARPTIG  314 (336)
T ss_dssp             TCSSCS
T ss_pred             cCCccc
Confidence            776543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=1.2e-21  Score=205.46  Aligned_cols=200  Identities=21%  Similarity=0.210  Sum_probs=115.2

Q ss_pred             CCCEEEccCCcCCCccchHHhhCC--CCCcEEEccccccCccccccccCCCccCceeccCccCccc-CCccCCCCCCCcE
Q 003893          298 FLQFLDLSNNQLTGEIPEHLAMGC--VSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGE-IPQSLSKCSSLQG  374 (788)
Q Consensus       298 ~L~~L~L~~n~i~~~~~~~~~~~l--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~  374 (788)
                      .++.++++++.+.   +..+ ..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++
T Consensus        48 ~~~~l~l~~~~~~---~~~~-~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVT-GRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCC---HHHH-HHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccCC---HHHH-HhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            4778888888765   2222 234  6788888888877765544 34567777777777766543 4555666667777


Q ss_pred             EEcccCcCCCCCCccccCCCCccEEEccCC-eeccC-chhhhhcccCCcEEeccCC-cCCCCCCCCCCCCcccEEEccCc
Q 003893          375 LFLSNNSLSGKIPRWLGNLTVLRHIIMPKN-HIEGP-IPLEFCQLRILQILDISDN-NISGSLPSCYDFVCIEQVHLSKN  451 (788)
Q Consensus       375 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~L~~L~l~~n  451 (788)
                      |++++|.+++..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++.                  
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~------------------  184 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK------------------  184 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH------------------
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH------------------
Confidence            777776666555555555666666666666 34432 3444555566666666655 44310                  


Q ss_pred             ccccccCcccccccc-cccEEeCCCCc--cC-CCCCccccCCcCCcEEEccCcc-CcccCcccccCCCCCCEEEccCCc
Q 003893          452 MLHGQLKEGTFFNCL-TLMILDLSYNH--LN-GNIPDRVDGLSQLSYLILAHNN-LEGEVPIQLCRLNQLQLLDLSNNN  525 (788)
Q Consensus       452 ~~~~~~~~~~~~~~~-~L~~L~l~~n~--i~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~  525 (788)
                          .++. .+..++ +|++|++++|.  ++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|.
T Consensus       185 ----~~~~-~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          185 ----HVQV-AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             ----HHHH-HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             ----HHHH-HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence                0111 345556 66666666663  32 1233344455666666666665 444444455555555555555553

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.82  E-value=2.9e-20  Score=191.97  Aligned_cols=227  Identities=19%  Similarity=0.184  Sum_probs=170.6

Q ss_pred             CCCcEEEecCCCCCccCchHH--hhcCCCCCEEEccCCcccCcCccCc--cCCCCcCEEEccCCcCcccCC----hhhhh
Q 003893          199 HDLEYVRLSHIKMNEEFPNWL--LENNTKLRQLSLVNDSLVGPFRLPI--HSHKQLRLLDVSKNNFQGHIP----LEIGD  270 (788)
Q Consensus       199 ~~L~~L~l~~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~----~~~~~  270 (788)
                      ..++.+.+.++.++......+  ...+++|++|++++|.+.+..+..+  ..+++|++|++++|.+++..+    ..+. 
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-
Confidence            357788888887754322211  1245779999999999998888777  889999999999999986554    2223 


Q ss_pred             cCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCc--cch-HHhhCCCCCcEEEccccccCccccc---cccC
Q 003893          271 ILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGE--IPE-HLAMGCVSLRSLALSNNNLEGHMFS---RNFN  344 (788)
Q Consensus       271 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~-~~~~~l~~L~~L~l~~n~i~~~~~~---~~~~  344 (788)
                      .+++|++|++++|.+.+..+..++.+++|++|++++|++.+.  ++. .....+++|++|++++|.++.....   .+..
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            478999999999999988888899999999999999987632  222 2224678899999999988643221   2456


Q ss_pred             CCccCceeccCccCcccCCccCCCC---CCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCc
Q 003893          345 LTNLIWLQLEGNHFVGEIPQSLSKC---SSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQ  421 (788)
Q Consensus       345 l~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  421 (788)
                      +++|++|++++|.+.+..|..+..+   ++|++|++++|.++ .+|..+.  ++|++|++++|++++. |. +..+++|+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~  297 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD  297 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence            7889999999999887767666666   68888999888888 5565553  7888888888888754 22 56778888


Q ss_pred             EEeccCCcCC
Q 003893          422 ILDISDNNIS  431 (788)
Q Consensus       422 ~L~l~~n~~~  431 (788)
                      .|++++|+++
T Consensus       298 ~L~L~~N~l~  307 (310)
T 4glp_A          298 NLTLDGNPFL  307 (310)
T ss_dssp             CEECSSTTTS
T ss_pred             EEECcCCCCC
Confidence            8888888775

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=8.5e-22  Score=210.53  Aligned_cols=244  Identities=18%  Similarity=0.223  Sum_probs=176.6

Q ss_pred             CccccCCCCccEEEccCCeeccCchh----hhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCc---
Q 003893          387 PRWLGNLTVLRHIIMPKNHIEGPIPL----EFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKE---  459 (788)
Q Consensus       387 ~~~l~~l~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~---  459 (788)
                      +..+..+++|++|++++|.+....+.    .+..+++|++|++++|.+..                    +.+.+|.   
T Consensus        25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~--------------------l~~~~~~~~~   84 (386)
T 2ca6_A           25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGR--------------------VKDEIPEALR   84 (386)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTS--------------------CGGGSHHHHH
T ss_pred             HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCc--------------------cccchhHHHH
Confidence            33445556666666666666554333    35567777777777764431                    1112221   


Q ss_pred             ---ccccccccccEEeCCCCccCC----CCCccccCCcCCcEEEccCccCcccCccc----ccCC---------CCCCEE
Q 003893          460 ---GTFFNCLTLMILDLSYNHLNG----NIPDRVDGLSQLSYLILAHNNLEGEVPIQ----LCRL---------NQLQLL  519 (788)
Q Consensus       460 ---~~~~~~~~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l---------~~L~~L  519 (788)
                         ..+..+++|++|++++|.+++    .++..+..+++|++|++++|.++...+..    +..+         ++|++|
T Consensus        85 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L  164 (386)
T 2ca6_A           85 LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI  164 (386)
T ss_dssp             HHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred             HHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEE
Confidence               134677888888888888876    35567778888999999999886443333    3333         899999


Q ss_pred             EccCCcCCc-cCc---ccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCce
Q 003893          520 DLSNNNLHG-HIP---SCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSG  595 (788)
Q Consensus       520 ~L~~n~l~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~  595 (788)
                      ++++|+++. ..+   ..+...                                                     ++|++
T Consensus       165 ~L~~n~l~~~~~~~l~~~l~~~-----------------------------------------------------~~L~~  191 (386)
T 2ca6_A          165 ICGRNRLENGSMKEWAKTFQSH-----------------------------------------------------RLLHT  191 (386)
T ss_dssp             ECCSSCCTGGGHHHHHHHHHHC-----------------------------------------------------TTCCE
T ss_pred             ECCCCCCCcHHHHHHHHHHHhC-----------------------------------------------------CCcCE
Confidence            999999873 222   122222                                                     27999


Q ss_pred             EECCCCcccc-----cCcccccccccCCeEeCCCCCCC----CCCCcccCCCCCCCeeeCCCcccCcc----Cchhhhc-
Q 003893          596 LDLSCNRLIG-----HIPPQIGNLTKIQTLNLSHNNLA----GPIPSTFSNLRNIESLDLSYNKLSWK----IPYQLVE-  661 (788)
Q Consensus       596 L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~-  661 (788)
                      |++++|+++.     ..+..+..+++|+.|+|++|.++    ..+|..+..+++|++|+|++|+++..    ++..+.. 
T Consensus       192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~  271 (386)
T 2ca6_A          192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL  271 (386)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred             EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence            9999999873     34447889999999999999995    46778899999999999999999865    5666644 


Q ss_pred             -CCCCcEEecccCcCcc----cCCCCc-cccCCCCcCCcCCCCCCCCC
Q 003893          662 -LNTLAVFSVAYNNLSG----KIPERA-AQFATFNESSYEGNPFLCGP  703 (788)
Q Consensus       662 -l~~L~~L~l~~N~l~~----~~~~~~-~~~~~l~~~~~~~Np~~C~~  703 (788)
                       +++|+.|++++|.+++    .+|..+ ..+++++.+++.+|++....
T Consensus       272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence             8999999999999998    466665 56899999999999988754

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=1.2e-19  Score=186.80  Aligned_cols=193  Identities=21%  Similarity=0.313  Sum_probs=124.1

Q ss_pred             CCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEE
Q 003893          368 KCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVH  447 (788)
Q Consensus       368 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~  447 (788)
                      .+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+               
T Consensus        39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~---------------   99 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN---------------   99 (308)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC---------------
T ss_pred             HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC---------------
Confidence            34455555555555543 22 35555666666666666654333  5666667777776666542               


Q ss_pred             ccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCC
Q 003893          448 LSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH  527 (788)
Q Consensus       448 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  527 (788)
                               ++  .+..+++|++|++++|++++. + .+..+++|++|++++|.+++..+  +..+++|++|++++|.++
T Consensus       100 ---------~~--~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  164 (308)
T 1h6u_A          100 ---------VS--AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS  164 (308)
T ss_dssp             ---------CG--GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             ---------ch--hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence                     11  345556666666666666643 2 26666677777777776664332  666777777777777766


Q ss_pred             ccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccC
Q 003893          528 GHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHI  607 (788)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  607 (788)
                      +..+  +..+.                                                     +|+.|++++|.+++..
T Consensus       165 ~~~~--l~~l~-----------------------------------------------------~L~~L~l~~n~l~~~~  189 (308)
T 1h6u_A          165 DLTP--LANLS-----------------------------------------------------KLTTLKADDNKISDIS  189 (308)
T ss_dssp             CCGG--GTTCT-----------------------------------------------------TCCEEECCSSCCCCCG
T ss_pred             CChh--hcCCC-----------------------------------------------------CCCEEECCCCccCcCh
Confidence            5433  33222                                                     6777777777777543


Q ss_pred             cccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCc
Q 003893          608 PPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW  653 (788)
Q Consensus       608 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  653 (788)
                      +  +..+++|+.|++++|++++..  .+..+++|++|++++|+++.
T Consensus       190 ~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          190 P--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             G--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             h--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            3  778889999999999998654  38889999999999999874

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.82  E-value=6.5e-20  Score=178.38  Aligned_cols=153  Identities=24%  Similarity=0.281  Sum_probs=83.0

Q ss_pred             cEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCC
Q 003893          469 MILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSS  548 (788)
Q Consensus       469 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~  548 (788)
                      +.++++++.++ .+|..+.  ++++.|++++|.+++..+..|..+++|++|++++|.+++..|..|..+.          
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~----------   80 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR----------   80 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS----------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc----------
Confidence            56677777666 3444332  4666666666666655555666666666666666666555444444433          


Q ss_pred             CCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCC
Q 003893          549 LQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLA  628 (788)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  628 (788)
                                                                 +|++|+|++|.+++..+..|.++++|+.|+|++|+++
T Consensus        81 -------------------------------------------~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~  117 (220)
T 2v9t_B           81 -------------------------------------------SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN  117 (220)
T ss_dssp             -------------------------------------------SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             -------------------------------------------CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence                                                       4555555555555444444455555555555555555


Q ss_pred             CCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcc
Q 003893          629 GPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG  677 (788)
Q Consensus       629 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~  677 (788)
                      +..|..|..+++|++|+|++|++++..+..|..+++|+.|++++|++.+
T Consensus       118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            5445555555555555555555554444444445555555554444443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=3.1e-19  Score=187.48  Aligned_cols=243  Identities=18%  Similarity=0.135  Sum_probs=156.2

Q ss_pred             CEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcE-EEc
Q 003893          251 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRS-LAL  329 (788)
Q Consensus       251 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~-L~l  329 (788)
                      ++++.++++++ .+|..+   .+++++|+|++|+++...+.+|.++++|++|+|++|++.+.+|...|.+++++.+ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            45677777776 677655   2467777777777775555567777777777777777765666666666666554 444


Q ss_pred             cccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccC
Q 003893          330 SNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGP  409 (788)
Q Consensus       330 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  409 (788)
                      ++|+++.+.+..|.++++|++|++++|++....+..+....++..+++.++                       +.+...
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-----------------------~~i~~l  144 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-----------------------INIHTI  144 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-----------------------TTCCEE
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-----------------------cccccc
Confidence            556666665666666666666666666665444444444445555555432                       222222


Q ss_pred             chhhhhccc-CCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccC
Q 003893          410 IPLEFCQLR-ILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDG  488 (788)
Q Consensus       410 ~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  488 (788)
                      .+..|..+. .++.|++++|+++...+..+...+++++.+.++...+.++..+|.++++|++||+++|+++...+..+  
T Consensus       145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~--  222 (350)
T 4ay9_X          145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL--  222 (350)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC--
T ss_pred             cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh--
Confidence            233333332 45566666666665555555566666666665444457777789999999999999999996555444  


Q ss_pred             CcCCcEEEccCccCcccCcccccCCCCCCEEEccCC
Q 003893          489 LSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNN  524 (788)
Q Consensus       489 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  524 (788)
                       .+|+.|.+.++.-...+| .+..+++|+.+++.++
T Consensus       223 -~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          223 -ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             -TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             -ccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence             556666665554333556 4788999999999764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=4.8e-20  Score=193.63  Aligned_cols=238  Identities=18%  Similarity=0.134  Sum_probs=114.6

Q ss_pred             EEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCC-CC-CCCcccE-EEccC
Q 003893          374 GLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPS-CY-DFVCIEQ-VHLSK  450 (788)
Q Consensus       374 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~-~~~~L~~-L~l~~  450 (788)
                      +++.++++++ .+|..+  .+++++|++++|+++.+.+.+|.++++|++|++++|++.+.++. .+ +++++.+ +.+..
T Consensus        13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            4444555544 333332  23455555555555544444555555555555555554322221 11 1222222 12222


Q ss_pred             cccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccC-ccCcccCcccccCCC-CCCEEEccCCcCCc
Q 003893          451 NMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAH-NNLEGEVPIQLCRLN-QLQLLDLSNNNLHG  528 (788)
Q Consensus       451 n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~  528 (788)
                      |.+. .++...|.++++|++|++++|++....+..+....++..|++.+ +.+....+..|..+. .++.|++++|+++.
T Consensus        90 N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           90 NNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             TTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             Cccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            2222 23333566666666666666666654444444555556666644 345444444444443 45566666666655


Q ss_pred             cCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCC-CcccccC
Q 003893          529 HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSC-NRLIGHI  607 (788)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~  607 (788)
                      +.+..|...                                                      +|+.|++++ |.++.+.
T Consensus       169 i~~~~f~~~------------------------------------------------------~L~~l~l~~~n~l~~i~  194 (350)
T 4ay9_X          169 IHNSAFNGT------------------------------------------------------QLDELNLSDNNNLEELP  194 (350)
T ss_dssp             ECTTSSTTE------------------------------------------------------EEEEEECTTCTTCCCCC
T ss_pred             CChhhcccc------------------------------------------------------chhHHhhccCCcccCCC
Confidence            444433221                                                      355566653 4454444


Q ss_pred             cccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccC
Q 003893          608 PPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYN  673 (788)
Q Consensus       608 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N  673 (788)
                      +..|.++++|+.|+|++|+|+.+.+..|.++++|   .+.++.-...+| .+..+++|+.++++++
T Consensus       195 ~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L---~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          195 NDVFHGASGPVILDISRTRIHSLPSYGLENLKKL---RARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             TTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEE---ECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             HHHhccCcccchhhcCCCCcCccChhhhccchHh---hhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence            4455666666666666666665444444433333   322222222344 2455666666666544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.82  E-value=3.9e-20  Score=195.12  Aligned_cols=180  Identities=26%  Similarity=0.246  Sum_probs=122.0

Q ss_pred             cEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCccccc-CCCCCCEEEccCCcCCccCcccccccchhhhccCCC
Q 003893          469 MILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC-RLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGS  547 (788)
Q Consensus       469 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~  547 (788)
                      +.++++++.++ .+|..+.  +.++.|+|++|.+++..+..+. .+++|++|++++|++++..+..|..+.         
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~---------   88 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP---------   88 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT---------
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC---------
Confidence            46777777766 3444332  3467777777777766666665 677777777777777766665555544         


Q ss_pred             CCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCC
Q 003893          548 SLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNL  627 (788)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  627 (788)
                                                                  +|++|+|++|++++..+..|..+++|+.|+|++|+|
T Consensus        89 --------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i  124 (361)
T 2xot_A           89 --------------------------------------------NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHI  124 (361)
T ss_dssp             --------------------------------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             --------------------------------------------CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcc
Confidence                                                        677777777777766666777777777777777777


Q ss_pred             CCCCCcccCCCCCCCeeeCCCcccCccCchhh---hcCCCCcEEecccCcCcccCCCCccccCC--CCcCCcCCCCCCCC
Q 003893          628 AGPIPSTFSNLRNIESLDLSYNKLSWKIPYQL---VELNTLAVFSVAYNNLSGKIPERAAQFAT--FNESSYEGNPFLCG  702 (788)
Q Consensus       628 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~l~~L~~L~l~~N~l~~~~~~~~~~~~~--l~~~~~~~Np~~C~  702 (788)
                      ++..|..|..+++|++|+|++|+|+...+..|   ..+++|+.|++++|++++..+..+..++.  +..+++.+|||.|+
T Consensus       125 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          125 VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             cEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence            77667777777777777777777775444444   45777777777777777655555555554  25677778888887


Q ss_pred             CC
Q 003893          703 PP  704 (788)
Q Consensus       703 ~~  704 (788)
                      |.
T Consensus       205 C~  206 (361)
T 2xot_A          205 CK  206 (361)
T ss_dssp             HH
T ss_pred             cC
Confidence            75

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=2.2e-19  Score=174.68  Aligned_cols=157  Identities=22%  Similarity=0.249  Sum_probs=117.4

Q ss_pred             ccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCc-ccccCCCCCCEEEccCCcCCccCcccccccchhhhccCC
Q 003893          468 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVP-IQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNG  546 (788)
Q Consensus       468 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~  546 (788)
                      -+.+++++|.++. +|..+.  +.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..+.        
T Consensus        13 ~~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~--------   81 (220)
T 2v70_A           13 GTTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS--------   81 (220)
T ss_dssp             TTEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT--------
T ss_pred             CCEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC--------
Confidence            3578888888874 555443  456788888888886644 4577788888888888888777666665554        


Q ss_pred             CCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCC
Q 003893          547 SSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNN  626 (788)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  626 (788)
                                                                   +|++|+|++|.+++..+..|..+++|++|+|++|+
T Consensus        82 ---------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  116 (220)
T 2v70_A           82 ---------------------------------------------GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR  116 (220)
T ss_dssp             ---------------------------------------------TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC
T ss_pred             ---------------------------------------------CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc
Confidence                                                         67788888888877777777777888888888888


Q ss_pred             CCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCC
Q 003893          627 LAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIP  680 (788)
Q Consensus       627 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  680 (788)
                      +++..|..|..+++|++|+|++|++++..|..|..+++|+.|++++|++++..+
T Consensus       117 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          117 ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            877777777777888888888888877777777777777777777777776543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.79  E-value=3.4e-19  Score=196.41  Aligned_cols=188  Identities=23%  Similarity=0.271  Sum_probs=128.6

Q ss_pred             CCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEcc
Q 003893          419 ILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILA  498 (788)
Q Consensus       419 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~  498 (788)
                      +++.|++++|.+++..+..  +++|+.|++++|.+. .+|    ..+++|++|++++|++++ +|. +.+  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            6666666666665532222  256666666666665 344    335778888888888875 555 544  78888888


Q ss_pred             CccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeee
Q 003893          499 HNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTT  578 (788)
Q Consensus       499 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  578 (788)
                      +|++++ +|.   .+++|+.|++++|.++++.+    .                                          
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~----~------------------------------------------  158 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTMLPE----L------------------------------------------  158 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSCCCC----C------------------------------------------
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCcCCC----c------------------------------------------
Confidence            888875 444   57788888888888775322    1                                          


Q ss_pred             cCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCC-------CeeeCCCccc
Q 003893          579 KSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNI-------ESLDLSYNKL  651 (788)
Q Consensus       579 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------~~L~Ls~N~l  651 (788)
                                 +++|+.|++++|.+++ +|. |.  ++|+.|+|++|+|+ .+|. |..  +|       +.|+|++|+|
T Consensus       159 -----------l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l  219 (571)
T 3cvr_A          159 -----------PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRI  219 (571)
T ss_dssp             -----------CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCC
T ss_pred             -----------CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcc
Confidence                       1268888888888875 555 55  78888888888888 4454 543  66       8888888888


Q ss_pred             CccCchhhhcCCCCcEEecccCcCcccCCCCccccC
Q 003893          652 SWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFA  687 (788)
Q Consensus       652 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~  687 (788)
                      + .+|..+..+++|+.|++++|++++.+|..+..+.
T Consensus       220 ~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          220 T-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             C-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             e-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            8 4677777788888888888888887776665543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=7.9e-19  Score=169.67  Aligned_cols=163  Identities=26%  Similarity=0.270  Sum_probs=138.4

Q ss_pred             cccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhcc
Q 003893          465 CLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYN  544 (788)
Q Consensus       465 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~  544 (788)
                      .++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+.      
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------  100 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT------  100 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc------
Confidence            35789999999999877777788899999999999999877666788899999999999999877766665554      


Q ss_pred             CCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCC
Q 003893          545 NGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSH  624 (788)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  624 (788)
                                                                     +|++|++++|++++..+..|..+++|+.|++++
T Consensus       101 -----------------------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  133 (208)
T 2o6s_A          101 -----------------------------------------------QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ  133 (208)
T ss_dssp             -----------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             -----------------------------------------------CCCEEEcCCCcCcccCHhHhccCCcCCEEECCC
Confidence                                                           799999999999987777789999999999999


Q ss_pred             CCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccC
Q 003893          625 NNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFA  687 (788)
Q Consensus       625 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~  687 (788)
                      |++++..+..|..+++|++|++++|++.+       .+++|+.|+++.|+++|.+|..++.+.
T Consensus       134 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          134 NQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             CccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence            99998877788999999999999998874       346789999999999999998665443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=1e-18  Score=171.17  Aligned_cols=155  Identities=22%  Similarity=0.219  Sum_probs=102.1

Q ss_pred             ccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCC
Q 003893          468 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGS  547 (788)
Q Consensus       468 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~  547 (788)
                      .+.++.+++.++ .+|..+.  ++|++|++++|.+++..+..|..+++|++|++++|++.+..+..|..+.         
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~---------   88 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT---------   88 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT---------
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC---------
Confidence            566788887776 4454332  6777888888887776677777777777777777777655555444433         


Q ss_pred             CCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCC
Q 003893          548 SLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNL  627 (788)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  627 (788)
                                                                  +|+.|+|++|++++..+..|..+++|+.|+|++|++
T Consensus        89 --------------------------------------------~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l  124 (229)
T 3e6j_A           89 --------------------------------------------QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL  124 (229)
T ss_dssp             --------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             --------------------------------------------CcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence                                                        566666666666655555566666666666666666


Q ss_pred             CCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccC
Q 003893          628 AGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKI  679 (788)
Q Consensus       628 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~  679 (788)
                      + .+|..+..+++|++|++++|++++..+..|..+++|+.|++++|++.+..
T Consensus       125 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          125 T-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             C-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             c-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            6 44555666666666666666666555555666666666666666666543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=2.1e-18  Score=167.68  Aligned_cols=158  Identities=22%  Similarity=0.292  Sum_probs=130.5

Q ss_pred             cEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCccccccc
Q 003893          493 SYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILE  572 (788)
Q Consensus       493 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  572 (788)
                      +.++++++.++ .+|..+.  +++++|++++|.+++..+..|..+.                                  
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~----------------------------------   56 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYK----------------------------------   56 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCT----------------------------------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCC----------------------------------
Confidence            57888888887 4555443  6788899999888877776666554                                  


Q ss_pred             ceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccC
Q 003893          573 SFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS  652 (788)
Q Consensus       573 ~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  652 (788)
                                         +|+.|+|++|.+++..|..|.++++|++|+|++|+|+.+.+..|.++++|++|+|++|+|+
T Consensus        57 -------------------~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~  117 (220)
T 2v9t_B           57 -------------------KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN  117 (220)
T ss_dssp             -------------------TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             -------------------CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence                               7888999999888888888888889999999999888777777888889999999999988


Q ss_pred             ccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCCCCCCC
Q 003893          653 WKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLP  706 (788)
Q Consensus       653 ~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~  706 (788)
                      +..|..|..+++|+.|++++|.+++..+..+..+++++.+++.+|||.|+|++.
T Consensus       118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~  171 (220)
T 2v9t_B          118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK  171 (220)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred             EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence            888888888888999999999988888877888888888888899999888753

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=2e-18  Score=167.89  Aligned_cols=114  Identities=18%  Similarity=0.276  Sum_probs=85.4

Q ss_pred             CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecc
Q 003893          592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  671 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  671 (788)
                      +|+.|++++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|+|++..|..|..+++|+.|+++
T Consensus        58 ~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  137 (220)
T 2v70_A           58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY  137 (220)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECT
T ss_pred             CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECC
Confidence            67777777777777666677777777777777777777666677777777777777777777767777777777777777


Q ss_pred             cCcCcccCCCCccccCCCCcCCcCCCCCCCCCCC
Q 003893          672 YNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL  705 (788)
Q Consensus       672 ~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~  705 (788)
                      +|.+++..|..+..+++++.+++.+|||.|+|+.
T Consensus       138 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A          138 DNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             TSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             CCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence            7777777777777777777777777777777764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.77  E-value=3.1e-18  Score=165.52  Aligned_cols=162  Identities=27%  Similarity=0.227  Sum_probs=131.1

Q ss_pred             cccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEc
Q 003893          442 CIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDL  521 (788)
Q Consensus       442 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  521 (788)
                      ++++|++++|.+. .++...|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        29 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           29 QTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            4444444444443 334446788889999999999998777777888999999999999998777777889999999999


Q ss_pred             cCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCC
Q 003893          522 SNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCN  601 (788)
Q Consensus       522 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n  601 (788)
                      ++|.+++..+..+..+.                                                     +|++|++++|
T Consensus       108 ~~N~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~l~~N  134 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLT-----------------------------------------------------QLKDLRLYQN  134 (208)
T ss_dssp             CSSCCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCSS
T ss_pred             CCCcCcccCHhHhccCC-----------------------------------------------------cCCEEECCCC
Confidence            99999877776665544                                                     7999999999


Q ss_pred             cccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCC
Q 003893          602 RLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNT  664 (788)
Q Consensus       602 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  664 (788)
                      .+++..+..+..+++|+.|++++|.+.+       .+++|++|+++.|++++.+|..++.++.
T Consensus       135 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          135 QLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             ccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence            9998777778999999999999997764       3568999999999999999988877654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=1.3e-17  Score=169.79  Aligned_cols=174  Identities=24%  Similarity=0.331  Sum_probs=136.8

Q ss_pred             hcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcE
Q 003893          415 CQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSY  494 (788)
Q Consensus       415 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~  494 (788)
                      ..+++|+.|++++|.+.                        .++  .+..+++|++|++++|++++..+  +..+++|++
T Consensus        43 ~~l~~L~~L~l~~~~i~------------------------~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~   94 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIK------------------------SVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGW   94 (291)
T ss_dssp             HHHHTCCEEECTTSCCC------------------------CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             hhcCcccEEEccCCCcc------------------------cCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCE
Confidence            45667777777777664                        222  36678889999999998886544  888889999


Q ss_pred             EEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccce
Q 003893          495 LILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESF  574 (788)
Q Consensus       495 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  574 (788)
                      |++++|.+++ + ..+..+++|++|++++|++++.  ..+..+.                                    
T Consensus        95 L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~------------------------------------  134 (291)
T 1h6t_A           95 LFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLP------------------------------------  134 (291)
T ss_dssp             EECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCT------------------------------------
T ss_pred             EECCCCcCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCC------------------------------------
Confidence            9999998874 3 3488889999999999988754  1232222                                    


Q ss_pred             EeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCcc
Q 003893          575 DFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWK  654 (788)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  654 (788)
                                       +|+.|++++|.+++.  ..+..+++|+.|++++|++++..+  +..+++|++|++++|+++. 
T Consensus       135 -----------------~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-  192 (291)
T 1h6t_A          135 -----------------QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-  192 (291)
T ss_dssp             -----------------TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-
T ss_pred             -----------------CCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-
Confidence                             789999999999865  578899999999999999997655  8899999999999999985 


Q ss_pred             CchhhhcCCCCcEEecccCcCcccC
Q 003893          655 IPYQLVELNTLAVFSVAYNNLSGKI  679 (788)
Q Consensus       655 ~~~~l~~l~~L~~L~l~~N~l~~~~  679 (788)
                      ++ .+..+++|+.|++++|+++...
T Consensus       193 l~-~l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          193 LR-ALAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             CG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred             Ch-hhccCCCCCEEECcCCcccCCc
Confidence            44 4888999999999999988643

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=4.4e-18  Score=179.41  Aligned_cols=159  Identities=27%  Similarity=0.254  Sum_probs=123.1

Q ss_pred             cccEEeCCCCccCCCCCcccc-CCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccC
Q 003893          467 TLMILDLSYNHLNGNIPDRVD-GLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNN  545 (788)
Q Consensus       467 ~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~  545 (788)
                      .++.|++++|++++..+..+. ++++|+.|++++|++++..+..|..+++|++|+|++|++++..+..|..+.       
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-------  112 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ-------  112 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-------
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCc-------
Confidence            477788888888776666676 788888888888888877777788888888888888888777666665554       


Q ss_pred             CCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCC
Q 003893          546 GSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN  625 (788)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  625 (788)
                                                                    +|+.|+|++|.+++..+..|..+++|+.|+|++|
T Consensus       113 ----------------------------------------------~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N  146 (361)
T 2xot_A          113 ----------------------------------------------ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN  146 (361)
T ss_dssp             ----------------------------------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             ----------------------------------------------CCCEEECCCCcccEECHHHhCCcccCCEEECCCC
Confidence                                                          7888888888888777888888888888888888


Q ss_pred             CCCCCCCccc---CCCCCCCeeeCCCcccCccCchhhhcCCC--CcEEecccCcCccc
Q 003893          626 NLAGPIPSTF---SNLRNIESLDLSYNKLSWKIPYQLVELNT--LAVFSVAYNNLSGK  678 (788)
Q Consensus       626 ~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~--L~~L~l~~N~l~~~  678 (788)
                      +|++..+..|   ..+++|+.|+|++|+|+...+..+..++.  ++.|++++|++.+.
T Consensus       147 ~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          147 QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             CCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             cCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence            8886655555   56888888888888888766677777776  37788888888764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=1.3e-17  Score=163.21  Aligned_cols=156  Identities=22%  Similarity=0.293  Sum_probs=102.5

Q ss_pred             CcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccc
Q 003893          492 LSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQIL  571 (788)
Q Consensus       492 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  571 (788)
                      -+.++.+++.++ .+|..+.  ++|++|++++|.+++..|..|..+.                                 
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~---------------------------------   64 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLI---------------------------------   64 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT---------------------------------
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCcc---------------------------------
Confidence            455666666665 3443332  5677777777777666665555444                                 


Q ss_pred             cceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCccc
Q 003893          572 ESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL  651 (788)
Q Consensus       572 ~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  651 (788)
                                          +|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|++++|+|
T Consensus        65 --------------------~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l  124 (229)
T 3e6j_A           65 --------------------NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL  124 (229)
T ss_dssp             --------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             --------------------CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence                                667777777777655555666677777777777777766666666677777777777777


Q ss_pred             CccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCCCCC
Q 003893          652 SWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPP  704 (788)
Q Consensus       652 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~  704 (788)
                      + .+|..+..+++|+.|++++|++++..+..+..+++++.+++.+||+.|+|+
T Consensus       125 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          125 T-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             C-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             c-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            6 556666667777777777777776665556666667777777777777664

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=1.6e-17  Score=185.50  Aligned_cols=81  Identities=28%  Similarity=0.386  Sum_probs=43.0

Q ss_pred             CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecc
Q 003893          592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  671 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  671 (788)
                      +|+.|+|++|.+++.  ..+..+++|+.|+|++|++++..|  +..+++|+.|+|++|+|++.  ..+..+++|+.|+++
T Consensus       132 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~  205 (605)
T 1m9s_A          132 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELF  205 (605)
T ss_dssp             TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECC
T ss_pred             ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEcc
Confidence            455555555555533  345555555555555555554433  55555555555555555532  235555555555555


Q ss_pred             cCcCccc
Q 003893          672 YNNLSGK  678 (788)
Q Consensus       672 ~N~l~~~  678 (788)
                      +|++++.
T Consensus       206 ~N~l~~~  212 (605)
T 1m9s_A          206 SQECLNK  212 (605)
T ss_dssp             SEEEECC
T ss_pred             CCcCcCC
Confidence            5555543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.72  E-value=4.2e-17  Score=179.74  Aligned_cols=189  Identities=26%  Similarity=0.332  Sum_probs=135.0

Q ss_pred             CCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccC
Q 003893          371 SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSK  450 (788)
Q Consensus       371 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~  450 (788)
                      +++.|++++|.+++ +|..+  .++|+.|++++|.++ .+|   ..+++|+.|++++|.+++                  
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~------------------  114 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST------------------  114 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC------------------
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC------------------
Confidence            78888888888875 55544  367888888888777 344   346777777777777663                  


Q ss_pred             cccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccC
Q 003893          451 NMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI  530 (788)
Q Consensus       451 n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  530 (788)
                            +|.  +.+  +|++|++++|.+++ +|.   .+++|+.|++++|.+++ +|.   .+++|++|++++|+++++ 
T Consensus       115 ------ip~--l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~l-  175 (571)
T 3cvr_A          115 ------LPE--LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFL-  175 (571)
T ss_dssp             ------CCC--CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-
T ss_pred             ------cch--hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCc-
Confidence                  332  222  67788888888775 444   56778888888888875 443   467888888888887763 


Q ss_pred             cccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCccc
Q 003893          531 PSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQ  610 (788)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  610 (788)
                      |. +.                                                       ++|+.|+|++|.++ .+|. 
T Consensus       176 p~-l~-------------------------------------------------------~~L~~L~Ls~N~L~-~lp~-  197 (571)
T 3cvr_A          176 PE-LP-------------------------------------------------------ESLEALDVSTNLLE-SLPA-  197 (571)
T ss_dssp             CC-CC-------------------------------------------------------TTCCEEECCSSCCS-SCCC-
T ss_pred             ch-hh-------------------------------------------------------CCCCEEECcCCCCC-chhh-
Confidence            32 22                                                       26888888888888 4554 


Q ss_pred             ccccccC-------CeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCC
Q 003893          611 IGNLTKI-------QTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNT  664 (788)
Q Consensus       611 ~~~l~~L-------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  664 (788)
                      +..  +|       +.|+|++|+|+. +|..+..+++|+.|+|++|++++.+|..+..+..
T Consensus       198 ~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          198 VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            544  66       999999999994 6777777999999999999999888888776543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=2.6e-17  Score=167.50  Aligned_cols=175  Identities=20%  Similarity=0.253  Sum_probs=149.3

Q ss_pred             cccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchh
Q 003893          461 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLH  540 (788)
Q Consensus       461 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~  540 (788)
                      .+..+++|++|++++|.+... + .+..+++|++|++++|++++..+  +..+++|++|++++|.+++..  .+..+.  
T Consensus        41 ~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~--  112 (291)
T 1h6t_A           41 TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLK--  112 (291)
T ss_dssp             CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG--GGTTCT--
T ss_pred             chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh--hhccCC--
Confidence            355788999999999999854 3 48889999999999999986544  899999999999999997632  133332  


Q ss_pred             hhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeE
Q 003893          541 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTL  620 (788)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  620 (788)
                                                                         +|++|++++|++++.  ..+..+++|+.|
T Consensus       113 ---------------------------------------------------~L~~L~L~~n~i~~~--~~l~~l~~L~~L  139 (291)
T 1h6t_A          113 ---------------------------------------------------KLKSLSLEHNGISDI--NGLVHLPQLESL  139 (291)
T ss_dssp             ---------------------------------------------------TCCEEECTTSCCCCC--GGGGGCTTCCEE
T ss_pred             ---------------------------------------------------CCCEEECCCCcCCCC--hhhcCCCCCCEE
Confidence                                                               899999999999864  468899999999


Q ss_pred             eCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCC
Q 003893          621 NLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFL  700 (788)
Q Consensus       621 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~  700 (788)
                      ++++|++++.  ..+..+++|++|++++|++++..+  +..+++|+.|++++|.+++. +. +..+++++.+++.+|+..
T Consensus       140 ~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~~-l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          140 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RA-LAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GG-GTTCTTCSEEEEEEEEEE
T ss_pred             EccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-hh-hccCCCCCEEECcCCccc
Confidence            9999999975  678999999999999999997555  88999999999999999975 43 688899999999999876


Q ss_pred             CC
Q 003893          701 CG  702 (788)
Q Consensus       701 C~  702 (788)
                      +.
T Consensus       214 ~~  215 (291)
T 1h6t_A          214 NK  215 (291)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.72  E-value=2.8e-17  Score=155.86  Aligned_cols=117  Identities=23%  Similarity=0.389  Sum_probs=108.9

Q ss_pred             ccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEE
Q 003893          589 VPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVF  668 (788)
Q Consensus       589 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  668 (788)
                      +|+++++|++++|.++ .+|..|..+++|+.|+|++|+|++..+..|.++++|++|+|++|+|++..|..|..+++|+.|
T Consensus        29 ~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L  107 (193)
T 2wfh_A           29 IPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL  107 (193)
T ss_dssp             CCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEE
Confidence            3458999999999998 667899999999999999999999888999999999999999999999888899999999999


Q ss_pred             ecccCcCcccCCCCccccCCCCcCCcCCCCCCCCCCCC
Q 003893          669 SVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLP  706 (788)
Q Consensus       669 ~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~~  706 (788)
                      ++++|.+++..+..+..+++++.+++.+|||.|+|+..
T Consensus       108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~  145 (193)
T 2wfh_A          108 SLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ  145 (193)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred             ECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCH
Confidence            99999999888888899999999999999999999853

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=5.2e-17  Score=155.13  Aligned_cols=155  Identities=15%  Similarity=0.226  Sum_probs=123.1

Q ss_pred             ccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhh
Q 003893          462 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE  541 (788)
Q Consensus       462 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  541 (788)
                      ...+++|++|++++|.++ .++ .+..+++|++|++++|.+.  .+..+..+++|++|++++|++++..+..+..++   
T Consensus        40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~---  112 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT---  112 (197)
T ss_dssp             HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT---
T ss_pred             hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCC---
Confidence            356778899999999888 444 5788889999999999765  334788889999999999988876665555544   


Q ss_pred             hccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEe
Q 003893          542 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLN  621 (788)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  621 (788)
                                                                        +|++|++++|.+++..+..+..+++|++|+
T Consensus       113 --------------------------------------------------~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  142 (197)
T 4ezg_A          113 --------------------------------------------------SLTLLDISHSAHDDSILTKINTLPKVNSID  142 (197)
T ss_dssp             --------------------------------------------------TCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred             --------------------------------------------------CCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence                                                              789999999999887788889999999999


Q ss_pred             CCCCC-CCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcc
Q 003893          622 LSHNN-LAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSG  677 (788)
Q Consensus       622 Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~  677 (788)
                      +++|+ ++. +| .+..+++|++|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus       143 L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          143 LSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             ccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            99998 664 44 68889999999999999985 33 67888999999999998764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=3.7e-17  Score=163.61  Aligned_cols=154  Identities=19%  Similarity=0.201  Sum_probs=128.0

Q ss_pred             cccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchh
Q 003893          461 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLH  540 (788)
Q Consensus       461 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~  540 (788)
                      .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+  +..+++|++|++++|++++..+...      
T Consensus        36 ~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~------  105 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS------  105 (263)
T ss_dssp             CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC------
T ss_pred             chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc------
Confidence            46778899999999999884 44 68889999999999999985544  8899999999999999876432111      


Q ss_pred             hhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeE
Q 003893          541 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTL  620 (788)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  620 (788)
                                                                        ++|+.|++++|++++.  ..+..+++|+.|
T Consensus       106 --------------------------------------------------~~L~~L~L~~N~l~~~--~~l~~l~~L~~L  133 (263)
T 1xeu_A          106 --------------------------------------------------ACLSRLFLDNNELRDT--DSLIHLKNLEIL  133 (263)
T ss_dssp             --------------------------------------------------SSCCEEECCSSCCSBS--GGGTTCTTCCEE
T ss_pred             --------------------------------------------------CcccEEEccCCccCCC--hhhcCcccccEE
Confidence                                                              2799999999999864  358899999999


Q ss_pred             eCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCC
Q 003893          621 NLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIP  680 (788)
Q Consensus       621 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  680 (788)
                      ++++|++++. + .+..+++|++|++++|++++.  ..+..+++|+.|++++|++++...
T Consensus       134 ~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          134 SIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             ECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred             ECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence            9999999965 3 688899999999999999865  678889999999999999987633

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=5.9e-17  Score=180.82  Aligned_cols=151  Identities=25%  Similarity=0.334  Sum_probs=85.9

Q ss_pred             cCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcE
Q 003893          343 FNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQI  422 (788)
Q Consensus       343 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  422 (788)
                      ..+++|+.|++++|.+... + .+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.+.  ..+..+++|+.
T Consensus        40 ~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~  113 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKS  113 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCE
T ss_pred             hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCE
Confidence            3455666666666665532 2 35555566666666655553322  44455555555555554431  13444444444


Q ss_pred             EeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccC
Q 003893          423 LDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNL  502 (788)
Q Consensus       423 L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l  502 (788)
                      |++++|.+.                       + ++  .+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+
T Consensus       114 L~Ls~N~l~-----------------------~-l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l  165 (605)
T 1m9s_A          114 LSLEHNGIS-----------------------D-IN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI  165 (605)
T ss_dssp             EECTTSCCC-----------------------C-CG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCC
T ss_pred             EEecCCCCC-----------------------C-Cc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcC
Confidence            444444433                       1 11  356667777777777777644  4566677777777777777


Q ss_pred             cccCcccccCCCCCCEEEccCCcCCcc
Q 003893          503 EGEVPIQLCRLNQLQLLDLSNNNLHGH  529 (788)
Q Consensus       503 ~~~~~~~~~~l~~L~~L~L~~n~l~~~  529 (788)
                      .+..|  +..+++|+.|+|++|++++.
T Consensus       166 ~~~~~--l~~l~~L~~L~Ls~N~i~~l  190 (605)
T 1m9s_A          166 SDIVP--LAGLTKLQNLYLSKNHISDL  190 (605)
T ss_dssp             CCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred             CCchh--hccCCCCCEEECcCCCCCCC
Confidence            65444  66677777777777766643

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.69  E-value=1.1e-16  Score=152.02  Aligned_cols=131  Identities=26%  Similarity=0.387  Sum_probs=84.0

Q ss_pred             cEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcc-cccCCCCCCEEEccCCcCCccCcccccccchhhhccCCC
Q 003893          469 MILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPI-QLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGS  547 (788)
Q Consensus       469 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~  547 (788)
                      +++++++|+++ .+|..+.  .++++|++++|.+++..+. .+..+++|++|++++|.+++..|..|..+.         
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---------   78 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS---------   78 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT---------
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc---------
Confidence            56777777775 4454333  2677777777777655443 366677777777777777666565555444         


Q ss_pred             CCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCC
Q 003893          548 SLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNL  627 (788)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  627 (788)
                                                                  +|++|+|++|++++..+..|.++++|++|+|++|++
T Consensus        79 --------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  114 (192)
T 1w8a_A           79 --------------------------------------------HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI  114 (192)
T ss_dssp             --------------------------------------------TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCC
T ss_pred             --------------------------------------------cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence                                                        566666666666666666666666666666666666


Q ss_pred             CCCCCcccCCCCCCCeeeCCCcccCccC
Q 003893          628 AGPIPSTFSNLRNIESLDLSYNKLSWKI  655 (788)
Q Consensus       628 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  655 (788)
                      ++..|..|..+++|++|++++|++.+..
T Consensus       115 ~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A          115 SCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             CeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            6666666666666666666666666443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.69  E-value=8.8e-17  Score=152.61  Aligned_cols=116  Identities=25%  Similarity=0.345  Sum_probs=108.6

Q ss_pred             cCCCceEECCCCcccccCcc-cccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEE
Q 003893          590 PSLLSGLDLSCNRLIGHIPP-QIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVF  668 (788)
Q Consensus       590 ~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  668 (788)
                      |..+++|++++|.+++..+. .|..+++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..|..+++|++|
T Consensus        28 ~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  107 (192)
T 1w8a_A           28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred             CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence            34799999999999977765 58999999999999999999989999999999999999999999988889999999999


Q ss_pred             ecccCcCcccCCCCccccCCCCcCCcCCCCCCCCCCC
Q 003893          669 SVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL  705 (788)
Q Consensus       669 ~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~  705 (788)
                      ++++|++++..|..+..+++++.+++.+|||.|+|+.
T Consensus       108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A          108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence            9999999999999999999999999999999999875

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=2.1e-16  Score=150.84  Aligned_cols=133  Identities=18%  Similarity=0.254  Sum_probs=96.2

Q ss_pred             ccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhh
Q 003893          462 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE  541 (788)
Q Consensus       462 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  541 (788)
                      +..+++|++|++++|.+.  .+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..++   
T Consensus        62 l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~---  136 (197)
T 4ezg_A           62 IEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP---  136 (197)
T ss_dssp             GGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCS---
T ss_pred             HhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCC---
Confidence            556667777777777654  223567777788888888777766677777788888888888877766565555443   


Q ss_pred             hccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCc-ccccCcccccccccCCeE
Q 003893          542 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNR-LIGHIPPQIGNLTKIQTL  620 (788)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L  620 (788)
                                                                        +|++|++++|. ++ .+| .+..+++|+.|
T Consensus       137 --------------------------------------------------~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L  164 (197)
T 4ezg_A          137 --------------------------------------------------KVNSIDLSYNGAIT-DIM-PLKTLPELKSL  164 (197)
T ss_dssp             --------------------------------------------------SCCEEECCSCTBCC-CCG-GGGGCSSCCEE
T ss_pred             --------------------------------------------------CCCEEEccCCCCcc-ccH-hhcCCCCCCEE
Confidence                                                              78888888887 54 444 68888999999


Q ss_pred             eCCCCCCCCCCCcccCCCCCCCeeeCCCcccCc
Q 003893          621 NLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW  653 (788)
Q Consensus       621 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  653 (788)
                      ++++|++++. + .+..+++|++|++++|++.+
T Consensus       165 ~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          165 NIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             ECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred             ECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence            9999999864 3 68888999999999998863

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=5e-17  Score=169.09  Aligned_cols=76  Identities=14%  Similarity=0.031  Sum_probs=47.6

Q ss_pred             CCceEECCCCcccccCcccccccccCC-eEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEe
Q 003893          592 LLSGLDLSCNRLIGHIPPQIGNLTKIQ-TLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFS  669 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  669 (788)
                      +|+.+++.+| ++.+.+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|.++...+.+|..+++|+.+.
T Consensus       251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            5556666555 5555556666666666 666666 55555556666666666666666666665566666666666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=4.7e-17  Score=169.29  Aligned_cols=100  Identities=15%  Similarity=0.035  Sum_probs=82.7

Q ss_pred             CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCC-eeeCCCcccCccCchhhhcCCCCcEEec
Q 003893          592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIE-SLDLSYNKLSWKIPYQLVELNTLAVFSV  670 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~l~~l~~L~~L~l  670 (788)
                      +|+.+++++|+++.+.+.+|.++++|+.++|++| ++.+.+.+|.++++|+ .+++.+ .++...+.+|..+++|+.+++
T Consensus       227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l  304 (329)
T 3sb4_A          227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA  304 (329)
T ss_dssp             TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred             CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence            6888888888888777788888888999999887 7777778888888898 888888 777777788888888999998


Q ss_pred             ccCcCcccCCCCccccCCCCcCC
Q 003893          671 AYNNLSGKIPERAAQFATFNESS  693 (788)
Q Consensus       671 ~~N~l~~~~~~~~~~~~~l~~~~  693 (788)
                      ++|+++...+..|..+.+++.++
T Consensus       305 ~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          305 TGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CCCccCccchhhhcCCcchhhhc
Confidence            88888888777777777776654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.66  E-value=8.7e-17  Score=160.90  Aligned_cols=172  Identities=21%  Similarity=0.256  Sum_probs=145.3

Q ss_pred             ccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhc
Q 003893          464 NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERY  543 (788)
Q Consensus       464 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~  543 (788)
                      .+.++..++++++.+++..  .+..+++|+.|++++|.++. ++ .+..+++|++|++++|++++..+  +..++     
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~-----   85 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLT-----   85 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCS-----
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCC-----
Confidence            4556778899999988543  57889999999999999984 44 68899999999999999987655  54443     


Q ss_pred             cCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCC
Q 003893          544 NNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLS  623 (788)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  623 (788)
                                                                      +|+.|++++|++++..+  +.. ++|+.|+++
T Consensus        86 ------------------------------------------------~L~~L~L~~N~l~~l~~--~~~-~~L~~L~L~  114 (263)
T 1xeu_A           86 ------------------------------------------------KLEELSVNRNRLKNLNG--IPS-ACLSRLFLD  114 (263)
T ss_dssp             ------------------------------------------------SCCEEECCSSCCSCCTT--CCC-SSCCEEECC
T ss_pred             ------------------------------------------------CCCEEECCCCccCCcCc--ccc-CcccEEEcc
Confidence                                                            89999999999986433  333 899999999


Q ss_pred             CCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCCCC
Q 003893          624 HNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGP  703 (788)
Q Consensus       624 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~  703 (788)
                      +|++++.  ..+..+++|++|++++|++++. + .+..+++|+.|++++|++++.  ..+..++.++.+++.+|++.|.+
T Consensus       115 ~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          115 NNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             SSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             CCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence            9999964  3599999999999999999964 4 688999999999999999987  55788999999999999988764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.65  E-value=6.3e-15  Score=156.20  Aligned_cols=266  Identities=12%  Similarity=0.066  Sum_probs=187.2

Q ss_pred             cCCCCCEEEccCCcccCcCccCccCCCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCE
Q 003893          222 NNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQF  301 (788)
Q Consensus       222 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  301 (788)
                      .+..++.+.+.+ .++.+....|..+ +|+.+.+..+ ++ .++...|.. .+|+.+.+.. .+..+...+|.++++|+.
T Consensus       111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK  184 (401)
T ss_dssp             ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred             ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence            345666666644 3444555666664 6888887655 54 555555554 3688888875 566566677888888888


Q ss_pred             EEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCc
Q 003893          302 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNS  381 (788)
Q Consensus       302 L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  381 (788)
                      +++.+|.++ .++...|. +.+|+.+.+..+ ++.+...+|.++++|+.+++..+ +..+...+|.+ .+|+.+.+. +.
T Consensus       185 l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~  258 (401)
T 4fdw_A          185 ADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NG  258 (401)
T ss_dssp             EECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TT
T ss_pred             eecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CC
Confidence            888888888 78887776 678888888744 77777778888888888888764 45466667776 678888884 44


Q ss_pred             CCCCCCccccCCCCccEEEccCCeec-----cCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccc
Q 003893          382 LSGKIPRWLGNLTVLRHIIMPKNHIE-----GPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQ  456 (788)
Q Consensus       382 l~~~~~~~l~~l~~L~~L~l~~n~~~-----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~  456 (788)
                      +......+|.++++|+.+.+.++.+.     .+...+|.+|++|+.+++.++ +.                        .
T Consensus       259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~------------------------~  313 (401)
T 4fdw_A          259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IR------------------------I  313 (401)
T ss_dssp             CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CC------------------------E
T ss_pred             ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eE------------------------E
Confidence            55556677788888888888776654     345567777777777777632 33                        4


Q ss_pred             cCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCC-CCCEEEccCCcC
Q 003893          457 LKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLN-QLQLLDLSNNNL  526 (788)
Q Consensus       457 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l  526 (788)
                      +...+|.+|++|+.+++..+ ++.+...+|.++ +|+.+++.+|.+....+..|.+++ +++.|.+..+.+
T Consensus       314 I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          314 LGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             ECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             EhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            55557888888888888654 555566778888 888888888877766666777774 677887766654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.64  E-value=4.4e-15  Score=157.38  Aligned_cols=265  Identities=13%  Similarity=0.138  Sum_probs=158.5

Q ss_pred             CCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEE
Q 003893          321 CVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHII  400 (788)
Q Consensus       321 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  400 (788)
                      +..++.+.+.+ .++.+...+|.++ +|+.+.+..+ +..+...+|.++ +|+.+.+.. .+....+.+|.+|++|+.++
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            34555555543 2444444455443 4555555544 433444445443 455555543 33333334444455555555


Q ss_pred             ccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCC
Q 003893          401 MPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG  480 (788)
Q Consensus       401 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~  480 (788)
                      +++|.+.                        ......+....|+.+.+..+ + ..++..+|.+|++|+.+++..+ ++.
T Consensus       187 l~~n~l~------------------------~I~~~aF~~~~L~~l~lp~~-l-~~I~~~aF~~~~~L~~l~l~~~-l~~  239 (401)
T 4fdw_A          187 LSKTKIT------------------------KLPASTFVYAGIEEVLLPVT-L-KEIGSQAFLKTSQLKTIEIPEN-VST  239 (401)
T ss_dssp             CTTSCCS------------------------EECTTTTTTCCCSEEECCTT-C-CEECTTTTTTCTTCCCEECCTT-CCE
T ss_pred             cCCCcce------------------------EechhhEeecccCEEEeCCc-h-heehhhHhhCCCCCCEEecCCC-ccC
Confidence            5444444                        44444444444444444432 2 2456668888888888888864 554


Q ss_pred             CCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCC-----ccCcccccccchhhhccCCCCCCCcccc
Q 003893          481 NIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH-----GHIPSCFDNTTLHERYNNGSSLQPFETS  555 (788)
Q Consensus       481 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (788)
                      +...+|.+ .+|+.+.+. +.++.....+|.++++|+.+++.+|.+.     .+.+.+|..+.                 
T Consensus       240 I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~-----------------  300 (401)
T 4fdw_A          240 IGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP-----------------  300 (401)
T ss_dssp             ECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT-----------------
T ss_pred             cccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc-----------------
Confidence            55667777 678888884 4566566778888888888888877654     33444444443                 


Q ss_pred             eeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCccc
Q 003893          556 FVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTF  635 (788)
Q Consensus       556 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  635 (788)
                                                          +|+.+++. +.++.+...+|.++++|+.++|..| ++.+.+.+|
T Consensus       301 ------------------------------------~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF  342 (401)
T 4fdw_A          301 ------------------------------------KLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF  342 (401)
T ss_dssp             ------------------------------------TCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred             ------------------------------------cCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence                                                67777776 3466566677777777777777544 655666777


Q ss_pred             CCCCCCCeeeCCCcccCccCchhhhcCC-CCcEEecccCcC
Q 003893          636 SNLRNIESLDLSYNKLSWKIPYQLVELN-TLAVFSVAYNNL  675 (788)
Q Consensus       636 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-~L~~L~l~~N~l  675 (788)
                      .++ +|+.+++++|.+....+..|..++ .++.+.+..+.+
T Consensus       343 ~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          343 NNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             SSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             CCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            777 777777777777665566666653 566777666544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.64  E-value=1.9e-18  Score=191.81  Aligned_cols=77  Identities=22%  Similarity=0.191  Sum_probs=54.0

Q ss_pred             CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCC-CcccCCCCCCCeeeCCCcccCccCch---hhhcCCCCcE
Q 003893          592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPI-PSTFSNLRNIESLDLSYNKLSWKIPY---QLVELNTLAV  667 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~---~l~~l~~L~~  667 (788)
                      +|+.|+|++|.+++ +| .++.+++|+.|+|++|+|++.. |..|+.+++|+.|+|++|++++..|.   .+..+++|+.
T Consensus       487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~  564 (567)
T 1dce_A          487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS  564 (567)
T ss_dssp             TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred             CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence            55566666666654 44 6777788888888888888765 77788888888888888888765442   2334778888


Q ss_pred             Eec
Q 003893          668 FSV  670 (788)
Q Consensus       668 L~l  670 (788)
                      ||+
T Consensus       565 L~l  567 (567)
T 1dce_A          565 ILT  567 (567)
T ss_dssp             EEC
T ss_pred             cCC
Confidence            764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.64  E-value=4.2e-15  Score=158.65  Aligned_cols=249  Identities=14%  Similarity=0.151  Sum_probs=118.8

Q ss_pred             CCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCce
Q 003893          272 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWL  351 (788)
Q Consensus       272 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L  351 (788)
                      +.+|+.+.+..+ ++.+...+|.++++|+.+++.++ ++ .++...|.++.+|+.+.+..+ +......+|.++..++..
T Consensus        70 c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~  145 (394)
T 4fs7_A           70 CRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEIT  145 (394)
T ss_dssp             CTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEE
T ss_pred             CCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeecccccccc
Confidence            444444444322 33333344555555555555432 33 444444545555555444322 222333344333322221


Q ss_pred             eccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCC
Q 003893          352 QLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS  431 (788)
Q Consensus       352 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  431 (788)
                      ....  .......+|.++++|+.+.+..+. .......|.++++|+.+.+..+ +..+...+|.++..|+.+.+..+...
T Consensus       146 ~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~  221 (394)
T 4fs7_A          146 IPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY  221 (394)
T ss_dssp             CCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE
T ss_pred             cCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE
Confidence            1111  112334456666666666665442 2244455666666666666554 33344556666666666666554322


Q ss_pred             CCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCccccc
Q 003893          432 GSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC  511 (788)
Q Consensus       432 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  511 (788)
                       .....+....|+.+.+.....  .+...+|.++..++.+.+..+... .....|..+..++.+....+.+   ....|.
T Consensus       222 -i~~~~~~~~~l~~i~ip~~~~--~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~  294 (394)
T 4fs7_A          222 -LGDFALSKTGVKNIIIPDSFT--ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFY  294 (394)
T ss_dssp             -ECTTTTTTCCCCEEEECTTCC--EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTT
T ss_pred             -eehhhcccCCCceEEECCCce--ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---cccccc
Confidence             222233344555555543221  233445666666666666655332 4445566666666666554432   223455


Q ss_pred             CCCCCCEEEccCCcCCccCcccccc
Q 003893          512 RLNQLQLLDLSNNNLHGHIPSCFDN  536 (788)
Q Consensus       512 ~l~~L~~L~L~~n~l~~~~~~~~~~  536 (788)
                      .+.+|+.+.+.++ +..+...+|..
T Consensus       295 ~~~~L~~i~l~~~-i~~I~~~aF~~  318 (394)
T 4fs7_A          295 GCSSLTEVKLLDS-VKFIGEEAFES  318 (394)
T ss_dssp             TCTTCCEEEECTT-CCEECTTTTTT
T ss_pred             ccccccccccccc-cceechhhhcC
Confidence            5666666665433 33333344433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.62  E-value=4.9e-18  Score=188.49  Aligned_cols=205  Identities=21%  Similarity=0.188  Sum_probs=148.5

Q ss_pred             cCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccE
Q 003893          391 GNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMI  470 (788)
Q Consensus       391 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  470 (788)
                      ..++.|+.|++++|.+. .+|..+..+++|+.|++++|......+.          .+..+...+..+. .+.++++|+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~----------ll~~~~~~~~~~~-~l~~l~~L~~  413 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIIL----------LMRALDPLLYEKE-TLQYFSTLKA  413 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHH----------HHHHHCTGGGHHH-HHHHHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHH----------HHHhcccccCCHH-HHHHHHhccc
Confidence            45677888888888876 6677888888888888866532100000          0001111222222 5666777777


Q ss_pred             Ee-CCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCC
Q 003893          471 LD-LSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSL  549 (788)
Q Consensus       471 L~-l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~  549 (788)
                      |+ ++.|.+           .+|+.+.+.+|.++...+      ..|+.|++++|.+++. |. +..++           
T Consensus       414 L~~l~~n~~-----------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~l-p~-~~~l~-----------  463 (567)
T 1dce_A          414 VDPMRAAYL-----------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVL-CH-LEQLL-----------  463 (567)
T ss_dssp             HCGGGHHHH-----------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSC-CC-GGGGT-----------
T ss_pred             Ccchhhccc-----------chhhhhhhhcccccccCc------cCceEEEecCCCCCCC-cC-ccccc-----------
Confidence            76 555433           345556666676653222      2488999999998864 43 55444           


Q ss_pred             CCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCC
Q 003893          550 QPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAG  629 (788)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  629 (788)
                                                                +|+.|+|++|.++ .+|..++.+++|+.|+|++|+|++
T Consensus       464 ------------------------------------------~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~  500 (567)
T 1dce_A          464 ------------------------------------------LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN  500 (567)
T ss_dssp             ------------------------------------------TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             ------------------------------------------cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence                                                      7999999999998 778899999999999999999996


Q ss_pred             CCCcccCCCCCCCeeeCCCcccCccC-chhhhcCCCCcEEecccCcCcccCCCC
Q 003893          630 PIPSTFSNLRNIESLDLSYNKLSWKI-PYQLVELNTLAVFSVAYNNLSGKIPER  682 (788)
Q Consensus       630 ~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~l~~N~l~~~~~~~  682 (788)
                       +| .|+.+++|++|+|++|+|++.. |..+..+++|+.|++++|++++.+|..
T Consensus       501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence             56 7999999999999999999876 999999999999999999999887653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=3.3e-15  Score=139.93  Aligned_cols=115  Identities=23%  Similarity=0.283  Sum_probs=106.1

Q ss_pred             cCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEe
Q 003893          590 PSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFS  669 (788)
Q Consensus       590 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  669 (788)
                      +++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            45899999999999988888889999999999999999988888899999999999999999987777889999999999


Q ss_pred             cccCcCcccCCCCccccCCCCcCCcCCCCCCCCCC
Q 003893          670 VAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPP  704 (788)
Q Consensus       670 l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~  704 (788)
                      +++|.+++..+..+..+++++.+++++||+.|+|+
T Consensus       107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            99999998877777889999999999999999886

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=2.8e-15  Score=139.15  Aligned_cols=86  Identities=24%  Similarity=0.215  Sum_probs=52.7

Q ss_pred             CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCC-cccCCCCCCCeeeCCCcccCccCc---hhhhcCCCCcE
Q 003893          592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIP-STFSNLRNIESLDLSYNKLSWKIP---YQLVELNTLAV  667 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~---~~l~~l~~L~~  667 (788)
                      +|++|++++|.+++.+|..+..+++|+.|++++|++++..+ ..+..+++|++|++++|++++..+   ..+..+++|+.
T Consensus        72 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~  151 (168)
T 2ell_A           72 KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY  151 (168)
T ss_dssp             SCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred             CCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence            34444444444444445555556667777777777664322 566677777777777777765444   36666777777


Q ss_pred             EecccCcCcc
Q 003893          668 FSVAYNNLSG  677 (788)
Q Consensus       668 L~l~~N~l~~  677 (788)
                      |++++|.+..
T Consensus       152 L~l~~n~~~~  161 (168)
T 2ell_A          152 LDGYDREDQE  161 (168)
T ss_dssp             ETTEETTSCB
T ss_pred             ecCCCCChhh
Confidence            7777776653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=2.6e-15  Score=139.32  Aligned_cols=137  Identities=23%  Similarity=0.226  Sum_probs=114.0

Q ss_pred             cccccEEeCCCCccC-CCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhc
Q 003893          465 CLTLMILDLSYNHLN-GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERY  543 (788)
Q Consensus       465 ~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~  543 (788)
                      .++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..++     
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----   95 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP-----   95 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT-----
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC-----
Confidence            467899999999987 56777788899999999999998855  6788899999999999999877666655444     


Q ss_pred             cCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccC-cccccccccCCeEeC
Q 003893          544 NNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHI-PPQIGNLTKIQTLNL  622 (788)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L  622 (788)
                                                                      +|++|++++|.+++.. +..+..+++|+.|++
T Consensus        96 ------------------------------------------------~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l  127 (168)
T 2ell_A           96 ------------------------------------------------NLTHLNLSGNKLKDISTLEPLKKLECLKSLDL  127 (168)
T ss_dssp             ------------------------------------------------TCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred             ------------------------------------------------CCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence                                                            7999999999998643 378899999999999


Q ss_pred             CCCCCCCCCC---cccCCCCCCCeeeCCCcccCccCch
Q 003893          623 SHNNLAGPIP---STFSNLRNIESLDLSYNKLSWKIPY  657 (788)
Q Consensus       623 s~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~  657 (788)
                      ++|++++..+   ..+..+++|++|++++|.+.. .|.
T Consensus       128 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~  164 (168)
T 2ell_A          128 FNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE-APD  164 (168)
T ss_dssp             CSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB-CCS
T ss_pred             eCCcCcchHHHHHHHHHhCccCcEecCCCCChhh-ccc
Confidence            9999997665   588999999999999999873 443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.59  E-value=1.1e-14  Score=138.06  Aligned_cols=87  Identities=30%  Similarity=0.322  Sum_probs=62.0

Q ss_pred             CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecc
Q 003893          592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  671 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  671 (788)
                      +|+.|++++|.+++..+..|.++++|++|+|++|+|++..|..|..+++|++|+|++|+|+...+..|..+++|+.|+++
T Consensus        55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (193)
T 2wfh_A           55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG  134 (193)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence            45555555555555555667777777777777777777777777777777777777777776555567777778888888


Q ss_pred             cCcCccc
Q 003893          672 YNNLSGK  678 (788)
Q Consensus       672 ~N~l~~~  678 (788)
                      +|++.+.
T Consensus       135 ~N~~~C~  141 (193)
T 2wfh_A          135 ANPLYCD  141 (193)
T ss_dssp             SSCEECS
T ss_pred             CCCeecC
Confidence            8877764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=4.1e-15  Score=134.86  Aligned_cols=80  Identities=25%  Similarity=0.236  Sum_probs=53.6

Q ss_pred             CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCC-CCcccCCCCCCCeeeCCCcccCccCc---hhhhcCCCCcE
Q 003893          592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGP-IPSTFSNLRNIESLDLSYNKLSWKIP---YQLVELNTLAV  667 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~l~~l~~L~~  667 (788)
                      +|++|++++|.+++.+|..+..+++|++|++++|++++. .+..+..+++|++|++++|++++..+   ..+..+++|+.
T Consensus        65 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~  144 (149)
T 2je0_A           65 KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY  144 (149)
T ss_dssp             TCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred             CCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence            455555555665555566666677777777777777753 23667777777777777777776554   46777777777


Q ss_pred             Eecc
Q 003893          668 FSVA  671 (788)
Q Consensus       668 L~l~  671 (788)
                      ||++
T Consensus       145 L~l~  148 (149)
T 2je0_A          145 LDGY  148 (149)
T ss_dssp             ETTB
T ss_pred             ccCC
Confidence            7765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.58  E-value=1.4e-14  Score=135.70  Aligned_cols=89  Identities=25%  Similarity=0.240  Sum_probs=51.6

Q ss_pred             CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecc
Q 003893          592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  671 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  671 (788)
                      +|++|++++|.+++..+..|..+++|+.|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  132 (177)
T 2o6r_A           53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  132 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence            34444444444444444445556666666666666665555556666666666666666665444445556666666666


Q ss_pred             cCcCcccCC
Q 003893          672 YNNLSGKIP  680 (788)
Q Consensus       672 ~N~l~~~~~  680 (788)
                      +|++++..|
T Consensus       133 ~N~~~~~~~  141 (177)
T 2o6r_A          133 TNPWDCSCP  141 (177)
T ss_dssp             SSCBCCCHH
T ss_pred             CCCeeccCc
Confidence            666665443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.57  E-value=7.9e-14  Score=148.79  Aligned_cols=317  Identities=10%  Similarity=0.051  Sum_probs=209.9

Q ss_pred             CCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCc
Q 003893          285 LDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ  364 (788)
Q Consensus       285 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  364 (788)
                      ++.+...+|.++.+|+.+.+..+ ++ .++...|.+|.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ +......
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~  134 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE  134 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence            44455668999999999999754 77 888888889999999999755 66677788889999999888755 4446667


Q ss_pred             cCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCC-CCCcc
Q 003893          365 SLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCY-DFVCI  443 (788)
Q Consensus       365 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L  443 (788)
                      +|.++..++......  .......+|.++++|+.+.+.++. ......+|.++.+|+.+++..+ +.......+ .+..|
T Consensus       135 aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L  210 (394)
T 4fs7_A          135 AFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL  210 (394)
T ss_dssp             TTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred             eeecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence            777776544333222  222445678889999999997654 3356678888899998888765 332222222 24555


Q ss_pred             cEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccC
Q 003893          444 EQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSN  523 (788)
Q Consensus       444 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  523 (788)
                      +.+.+..+..  .+.. .+..+..|+.+.+... ++.+....|.++..++.+.+..+... .....|..+..++.+....
T Consensus       211 ~~i~~~~~~~--~i~~-~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~  285 (394)
T 4fs7_A          211 ENMEFPNSLY--YLGD-FALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGS  285 (394)
T ss_dssp             CBCCCCTTCC--EECT-TTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECS
T ss_pred             ceeecCCCce--Eeeh-hhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCc
Confidence            5555444322  1222 2233445666655433 22233345556666666666555333 4444556666666665544


Q ss_pred             CcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcc
Q 003893          524 NNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRL  603 (788)
Q Consensus       524 n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  603 (788)
                      +.+.   ..+|...                                                     .+|+.+.+.++ +
T Consensus       286 ~~i~---~~~F~~~-----------------------------------------------------~~L~~i~l~~~-i  308 (394)
T 4fs7_A          286 VIVP---EKTFYGC-----------------------------------------------------SSLTEVKLLDS-V  308 (394)
T ss_dssp             SEEC---TTTTTTC-----------------------------------------------------TTCCEEEECTT-C
T ss_pred             eeec---ccccccc-----------------------------------------------------ccccccccccc-c
Confidence            3321   1122221                                                     26777887654 6


Q ss_pred             cccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccC
Q 003893          604 IGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYN  673 (788)
Q Consensus       604 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N  673 (788)
                      +.+...+|.++++|+.++|..+ ++.+...+|.++++|+.+++..+ ++.....+|..+.+|+.+++..+
T Consensus       309 ~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          309 KFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             ceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            6566778999999999999754 77677789999999999999877 77677788999999999998765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.56  E-value=5e-15  Score=134.32  Aligned_cols=129  Identities=22%  Similarity=0.282  Sum_probs=107.9

Q ss_pred             cccccEEeCCCCccC-CCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhc
Q 003893          465 CLTLMILDLSYNHLN-GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERY  543 (788)
Q Consensus       465 ~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~  543 (788)
                      .++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..++     
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-----   88 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP-----   88 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT-----
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC-----
Confidence            467899999999987 67777888899999999999998855  6788899999999999999876666655444     


Q ss_pred             cCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCccccc-CcccccccccCCeEeC
Q 003893          544 NNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGH-IPPQIGNLTKIQTLNL  622 (788)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L  622 (788)
                                                                      +|++|++++|.+++. .+..+..+++|++|++
T Consensus        89 ------------------------------------------------~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l  120 (149)
T 2je0_A           89 ------------------------------------------------NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL  120 (149)
T ss_dssp             ------------------------------------------------TCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred             ------------------------------------------------CCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence                                                            799999999999864 3478899999999999


Q ss_pred             CCCCCCCCCC---cccCCCCCCCeeeCCC
Q 003893          623 SHNNLAGPIP---STFSNLRNIESLDLSY  648 (788)
Q Consensus       623 s~N~l~~~~~---~~~~~l~~L~~L~Ls~  648 (788)
                      ++|++++..+   ..+..+++|++||+++
T Consensus       121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          121 FNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             cCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999997766   5788899999999874

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.55  E-value=2.1e-15  Score=172.99  Aligned_cols=191  Identities=20%  Similarity=0.232  Sum_probs=82.2

Q ss_pred             cCCcEEeccCCcCCCCCCCCCCCCcccEE-----EccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCC
Q 003893          418 RILQILDISDNNISGSLPSCYDFVCIEQV-----HLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQL  492 (788)
Q Consensus       418 ~~L~~L~l~~n~~~~~~~~~~~~~~L~~L-----~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L  492 (788)
                      +.++.|++..|.+............|..+     ++..|.+.  ++...+..++.|+.|+|++|.+. .+|..+..+++|
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence            55777888777776543333322222222     22222221  23335666666666666666666 344444466666


Q ss_pred             cEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCccccccc
Q 003893          493 SYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILE  572 (788)
Q Consensus       493 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  572 (788)
                      ++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+..+.                                  
T Consensus       250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~----------------------------------  293 (727)
T 4b8c_D          250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF----------------------------------  293 (727)
T ss_dssp             SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT----------------------------------
T ss_pred             CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC----------------------------------
Confidence            66666666666 55666666666666666666666 3344444433                                  


Q ss_pred             ceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCC-CCCeeeCCCccc
Q 003893          573 SFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLR-NIESLDLSYNKL  651 (788)
Q Consensus       573 ~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l  651 (788)
                                         +|++|+|++|.++ .+|..|..+++|+.|+|++|++++.+|..+..+. .+..+++++|.+
T Consensus       294 -------------------~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l  353 (727)
T 4b8c_D          294 -------------------QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP  353 (727)
T ss_dssp             -------------------TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             -------------------CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence                               5666666666665 4455566666666666666666665555554321 122356666666


Q ss_pred             CccCchhhhcCCCCcEEecccC
Q 003893          652 SWKIPYQLVELNTLAVFSVAYN  673 (788)
Q Consensus       652 ~~~~~~~l~~l~~L~~L~l~~N  673 (788)
                      ++.+|.      .|+.|++++|
T Consensus       354 ~~~~p~------~l~~l~l~~n  369 (727)
T 4b8c_D          354 EIPLPH------ERRFIEINTD  369 (727)
T ss_dssp             CCCCCC------C---------
T ss_pred             cCcCcc------ccceeEeecc
Confidence            655553      3445555555

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.55  E-value=1.1e-15  Score=175.29  Aligned_cols=219  Identities=21%  Similarity=0.215  Sum_probs=120.2

Q ss_pred             CCccEEEccCCeeccCchhhhhcccCCc-----EEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccc
Q 003893          394 TVLRHIIMPKNHIEGPIPLEFCQLRILQ-----ILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTL  468 (788)
Q Consensus       394 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~-----~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L  468 (788)
                      +.++.|.+.+|.+... +..+.....|.     .++++.|.+......+..+..|+.|++++|.+. .++. .+..+++|
T Consensus       173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~-~~~~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISA-NIFKYDFL  249 (727)
T ss_dssp             --------------------------------------------------CCCCCCEEECTTSCCS-CCCG-GGGGCCSC
T ss_pred             CccceEEeeCCCCCcc-hhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCCh-hhcCCCCC
Confidence            5678888888887753 33222222222     233333444322223345889999999999987 6666 45589999


Q ss_pred             cEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCC
Q 003893          469 MILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSS  548 (788)
Q Consensus       469 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~  548 (788)
                      ++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..|..+.          
T Consensus       250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~----------  316 (727)
T 4b8c_D          250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLC----------  316 (727)
T ss_dssp             SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCT----------
T ss_pred             CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCC----------
Confidence            99999999999 78888999999999999999999 77889999999999999999997 4455566655          


Q ss_pred             CCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCccccccccc-CCeEeCCCCCC
Q 003893          549 LQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTK-IQTLNLSHNNL  627 (788)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l  627 (788)
                                                                 +|+.|+|++|.+++.+|..+..+.. +..|+|++|.+
T Consensus       317 -------------------------------------------~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l  353 (727)
T 4b8c_D          317 -------------------------------------------NLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP  353 (727)
T ss_dssp             -------------------------------------------TCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             -------------------------------------------CccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence                                                       8999999999999988888866532 23578999999


Q ss_pred             CCCCCcccCCCCCCCeeeCCCc--------ccCccCchhhhcCCCCcEEecccCcCcc
Q 003893          628 AGPIPSTFSNLRNIESLDLSYN--------KLSWKIPYQLVELNTLAVFSVAYNNLSG  677 (788)
Q Consensus       628 ~~~~~~~~~~l~~L~~L~Ls~N--------~l~~~~~~~l~~l~~L~~L~l~~N~l~~  677 (788)
                      ++.+|..      |+.|++++|        .+....+..+..+..+....+++|-+.+
T Consensus       354 ~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~  405 (727)
T 4b8c_D          354 EIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ  405 (727)
T ss_dssp             CCCCCCC-----------------------------------------------CCCG
T ss_pred             cCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeecccccc
Confidence            9887764      456777777        4444445555666677777888887753

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.53  E-value=2.7e-14  Score=132.24  Aligned_cols=110  Identities=24%  Similarity=0.273  Sum_probs=89.1

Q ss_pred             CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecc
Q 003893          592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  671 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  671 (788)
                      ..+.+++++|.++. +|..+.  ++|+.|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|++|+++
T Consensus        10 ~~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            35678888888874 555443  788888888888888878888888888888888888887777777888888888888


Q ss_pred             cCcCcccCCCCccccCCCCcCCcCCCCCCCCCC
Q 003893          672 YNNLSGKIPERAAQFATFNESSYEGNPFLCGPP  704 (788)
Q Consensus       672 ~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~  704 (788)
                      +|++++..+..+..+++++.+++.+|||.|+|+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            888888777777888888888888888888875

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.50  E-value=7.3e-14  Score=129.69  Aligned_cols=109  Identities=22%  Similarity=0.249  Sum_probs=84.9

Q ss_pred             CceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEeccc
Q 003893          593 LSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAY  672 (788)
Q Consensus       593 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~  672 (788)
                      -+.+++++|+++ .+|..+.  ++|+.|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|+.|++++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            356888888886 4555443  7788888888888877788888888888888888888876666677888888888888


Q ss_pred             CcCcccCCCCccccCCCCcCCcCCCCCCCCCC
Q 003893          673 NNLSGKIPERAAQFATFNESSYEGNPFLCGPP  704 (788)
Q Consensus       673 N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~  704 (788)
                      |.+++..+..+..+++++.+++.+|||.|+|.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            88887766667778888888888888888775

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=1.3e-13  Score=128.77  Aligned_cols=83  Identities=17%  Similarity=0.164  Sum_probs=53.7

Q ss_pred             CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCc--ccCCCCCCCeeeCCCcccCccCch----hhhcCCCC
Q 003893          592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPS--TFSNLRNIESLDLSYNKLSWKIPY----QLVELNTL  665 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~l~~L  665 (788)
                      +|++|++++|.+++..+..+..+++|+.|++++|+++. +|.  .+..+++|++|++++|+++. .|.    .+..+++|
T Consensus        65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L  142 (176)
T 1a9n_A           65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQV  142 (176)
T ss_dssp             SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTC
T ss_pred             CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCcc
Confidence            45555555555554444445667777777777777753 343  66677777777777777763 444    36777777


Q ss_pred             cEEecccCcCc
Q 003893          666 AVFSVAYNNLS  676 (788)
Q Consensus       666 ~~L~l~~N~l~  676 (788)
                      +.||+++|...
T Consensus       143 ~~Ld~~~n~~~  153 (176)
T 1a9n_A          143 RVLDFQKVKLK  153 (176)
T ss_dssp             SEETTEECCHH
T ss_pred             ceeCCCcCCHH
Confidence            77777777654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=9.3e-14  Score=129.73  Aligned_cols=135  Identities=19%  Similarity=0.158  Sum_probs=110.5

Q ss_pred             cccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchh
Q 003893          461 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLH  540 (788)
Q Consensus       461 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~  540 (788)
                      .+.++++|++|++++|+++. ++......++|+.|++++|.+++.  ..+..+++|++|++++|.+++..+..+..++  
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--   88 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP--   88 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT--
T ss_pred             hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC--
Confidence            46778899999999999984 454333344999999999999865  5788999999999999999877666555554  


Q ss_pred             hhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcc--cccccccCC
Q 003893          541 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPP--QIGNLTKIQ  618 (788)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~  618 (788)
                                                                         +|++|++++|.++. +|.  .+..+++|+
T Consensus        89 ---------------------------------------------------~L~~L~L~~N~i~~-~~~~~~l~~l~~L~  116 (176)
T 1a9n_A           89 ---------------------------------------------------DLTELILTNNSLVE-LGDLDPLASLKSLT  116 (176)
T ss_dssp             ---------------------------------------------------TCCEEECCSCCCCC-GGGGGGGGGCTTCC
T ss_pred             ---------------------------------------------------CCCEEECCCCcCCc-chhhHhhhcCCCCC
Confidence                                                               89999999999974 444  788999999


Q ss_pred             eEeCCCCCCCCCCCc----ccCCCCCCCeeeCCCcccCc
Q 003893          619 TLNLSHNNLAGPIPS----TFSNLRNIESLDLSYNKLSW  653 (788)
Q Consensus       619 ~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~  653 (788)
                      .|++++|.++. .|.    .+..+++|+.||+++|.+..
T Consensus       117 ~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          117 YLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             EEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             EEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            99999999984 455    48899999999999998863

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.46  E-value=5.1e-12  Score=134.71  Aligned_cols=322  Identities=13%  Similarity=0.138  Sum_probs=151.3

Q ss_pred             CcEEEeeCCcCCCCCCccccCCCCCCEEEccCCc---CCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCce
Q 003893          275 LTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ---LTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWL  351 (788)
Q Consensus       275 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L  351 (788)
                      |+.+.+..+ ++.+...+|.++.+|+.+.+..+.   ++ .+....|.+|.+|+.+.+..+ ++.+....|.++.+|+.+
T Consensus        66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i  142 (394)
T 4gt6_A           66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV  142 (394)
T ss_dssp             CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred             CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence            444444432 333444445555555555554432   33 444555555555555544332 333444455555555555


Q ss_pred             eccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCC
Q 003893          352 QLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS  431 (788)
Q Consensus       352 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  431 (788)
                      .+..+. ..+....|..+..|+.+.+..+ +......+|.+ ..|+.+.+..+-. .....+|..+..++..........
T Consensus       143 ~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~  218 (394)
T 4gt6_A          143 TIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYP  218 (394)
T ss_dssp             ECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSC
T ss_pred             ccccee-eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhhccccceecccccccc
Confidence            554332 2244445555666666655443 22233333432 4466665554322 233445555666655554443322


Q ss_pred             CCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCccccc
Q 003893          432 GSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC  511 (788)
Q Consensus       432 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  511 (788)
                      ......+......           ......+.....+..+.+... ++.+...+|.++.+|+.+.+.++... ....+|.
T Consensus       219 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~  285 (394)
T 4gt6_A          219 AIDNVLYEKSANG-----------DYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVS-IGTGAFM  285 (394)
T ss_dssp             BSSSCEEEECTTS-----------CEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTT
T ss_pred             cccceeecccccc-----------cccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccce-ecCcccc
Confidence            1110000000000           000001111222333333221 22233345556666666666544332 4445566


Q ss_pred             CCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccC
Q 003893          512 RLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPS  591 (788)
Q Consensus       512 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~  591 (788)
                      ++++|+.+.+. +.++.+...+|..+.                                                     
T Consensus       286 ~c~~L~~i~l~-~~i~~I~~~aF~~c~-----------------------------------------------------  311 (394)
T 4gt6_A          286 NCPALQDIEFS-SRITELPESVFAGCI-----------------------------------------------------  311 (394)
T ss_dssp             TCTTCCEEECC-TTCCEECTTTTTTCT-----------------------------------------------------
T ss_pred             cccccccccCC-CcccccCceeecCCC-----------------------------------------------------
Confidence            66666666664 334444444444433                                                     


Q ss_pred             CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecc
Q 003893          592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  671 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  671 (788)
                      +|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.++++|+.+++.++....   ..+....+|+.+.+.
T Consensus       312 ~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~  386 (394)
T 4gt6_A          312 SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVA  386 (394)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC------
T ss_pred             CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeC
Confidence            5666666543 44455667777888888888654 665666778888888888888776542   345556677777766


Q ss_pred             cCcC
Q 003893          672 YNNL  675 (788)
Q Consensus       672 ~N~l  675 (788)
                      .|.+
T Consensus       387 ~~~~  390 (394)
T 4gt6_A          387 PGSI  390 (394)
T ss_dssp             ----
T ss_pred             CCCE
Confidence            5543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.44  E-value=5e-13  Score=123.66  Aligned_cols=90  Identities=21%  Similarity=0.193  Sum_probs=84.5

Q ss_pred             CCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEec
Q 003893          591 SLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSV  670 (788)
Q Consensus       591 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l  670 (788)
                      +.+++|+|++|++++..|..|..+++|++|+|++|+|+++.+..|..+++|++|+|++|+|++..+..|..+++|+.|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            48999999999999998999999999999999999999888888999999999999999999877778999999999999


Q ss_pred             ccCcCcccCC
Q 003893          671 AYNNLSGKIP  680 (788)
Q Consensus       671 ~~N~l~~~~~  680 (788)
                      ++|++++..+
T Consensus       110 ~~N~~~c~c~  119 (170)
T 3g39_A          110 LNNPWDCACS  119 (170)
T ss_dssp             CSSCBCTTBG
T ss_pred             CCCCCCCCch
Confidence            9999998765

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=2.8e-15  Score=143.20  Aligned_cols=156  Identities=21%  Similarity=0.235  Sum_probs=115.0

Q ss_pred             ccccccccEEeCCCCccCCCCCc------cccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCccccc
Q 003893          462 FFNCLTLMILDLSYNHLNGNIPD------RVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFD  535 (788)
Q Consensus       462 ~~~~~~L~~L~l~~n~i~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  535 (788)
                      +.....++.++++.+.+.+..|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++.. |..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l-~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKI-ENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSC-SSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccc-cchhh
Confidence            34455666667777766665555      77888888999998888885 55 778888889999888888743 33332


Q ss_pred             ccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccc
Q 003893          536 NTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLT  615 (788)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  615 (788)
                      .++                                                     +|+.|++++|++++. | .+..++
T Consensus        91 ~~~-----------------------------------------------------~L~~L~L~~N~l~~l-~-~~~~l~  115 (198)
T 1ds9_A           91 VAD-----------------------------------------------------TLEELWISYNQIASL-S-GIEKLV  115 (198)
T ss_dssp             HHH-----------------------------------------------------HCSEEEEEEEECCCH-H-HHHHHH
T ss_pred             cCC-----------------------------------------------------cCCEEECcCCcCCcC-C-ccccCC
Confidence            222                                                     688888888888853 4 578888


Q ss_pred             cCCeEeCCCCCCCCCCC-cccCCCCCCCeeeCCCcccCccCch----------hhhcCCCCcEEecccCcCcc
Q 003893          616 KIQTLNLSHNNLAGPIP-STFSNLRNIESLDLSYNKLSWKIPY----------QLVELNTLAVFSVAYNNLSG  677 (788)
Q Consensus       616 ~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~----------~l~~l~~L~~L~l~~N~l~~  677 (788)
                      +|+.|++++|++++..+ ..+..+++|++|++++|++++..|.          .+..+++|+.||  +|+++.
T Consensus       116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            99999999998885433 4688888999999999988766554          277788888887  666653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.41  E-value=1.2e-11  Score=131.91  Aligned_cols=135  Identities=10%  Similarity=0.132  Sum_probs=77.1

Q ss_pred             CcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCccccccc
Q 003893          458 KEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNT  537 (788)
Q Consensus       458 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  537 (788)
                      ...+|.+|..|+.+.+..+... +...+|.++++|+.+.+. +.++.....+|.++.+|+.+++.++ ++.+...+|..+
T Consensus       257 ~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C  333 (394)
T 4gt6_A          257 ETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC  333 (394)
T ss_dssp             CTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred             ccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence            3346667777777776654332 444566667777777765 3344455556777777777777543 444555555554


Q ss_pred             chhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccC
Q 003893          538 TLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKI  617 (788)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  617 (788)
                      .                                                     +|+.+.+..+ ++.+...+|.++++|
T Consensus       334 ~-----------------------------------------------------~L~~i~ip~s-v~~I~~~aF~~C~~L  359 (394)
T 4gt6_A          334 E-----------------------------------------------------QLERIAIPSS-VTKIPESAFSNCTAL  359 (394)
T ss_dssp             T-----------------------------------------------------TCCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred             C-----------------------------------------------------CCCEEEECcc-cCEEhHhHhhCCCCC
Confidence            4                                                     5666666543 555556778888888


Q ss_pred             CeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccC
Q 003893          618 QTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS  652 (788)
Q Consensus       618 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  652 (788)
                      +.+++.++...   ...|....+|+.+.+..|.+.
T Consensus       360 ~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~~  391 (394)
T 4gt6_A          360 NNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSID  391 (394)
T ss_dssp             CEEEESSCHHH---HHTCBCCCCC-----------
T ss_pred             CEEEECCceee---hhhhhccCCCCEEEeCCCCEE
Confidence            88888776543   145666777888777766543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.40  E-value=1.3e-12  Score=121.12  Aligned_cols=91  Identities=22%  Similarity=0.226  Sum_probs=83.7

Q ss_pred             cCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEe
Q 003893          590 PSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFS  669 (788)
Q Consensus       590 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  669 (788)
                      |+.|+.|+|++|++++..|..|..+++|+.|+|++|+|+++.+..|..+++|++|+|++|+|++..+..|..+++|+.|+
T Consensus        32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  111 (174)
T 2r9u_A           32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY  111 (174)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence            34899999999999999899999999999999999999988777889999999999999999977776799999999999


Q ss_pred             cccCcCcccCC
Q 003893          670 VAYNNLSGKIP  680 (788)
Q Consensus       670 l~~N~l~~~~~  680 (788)
                      +++|++.+..+
T Consensus       112 L~~N~~~c~~~  122 (174)
T 2r9u_A          112 LYNNPWDCECR  122 (174)
T ss_dssp             CCSSCBCTTBG
T ss_pred             eCCCCcccccc
Confidence            99999997654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.35  E-value=6.3e-15  Score=140.75  Aligned_cols=154  Identities=22%  Similarity=0.237  Sum_probs=123.7

Q ss_pred             ccCCcCCcEEEccCccCcccCcc------cccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeec
Q 003893          486 VDGLSQLSYLILAHNNLEGEVPI------QLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIM  559 (788)
Q Consensus       486 ~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (788)
                      +.....++.++++++.+.+..|.      .+..+++|++|++++|.+++. | .+..+.                     
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l-~-~~~~l~---------------------   70 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-S-SLSGME---------------------   70 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC-C-CHHHHT---------------------
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc-c-ccccCC---------------------
Confidence            34456677777777777766665      899999999999999999873 4 444443                     


Q ss_pred             CCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCC
Q 003893          560 GGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLR  639 (788)
Q Consensus       560 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  639 (788)
                                                      +|+.|++++|.++ .+|..+..+++|+.|++++|++++ +| .+..++
T Consensus        71 --------------------------------~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~  115 (198)
T 1ds9_A           71 --------------------------------NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLV  115 (198)
T ss_dssp             --------------------------------TCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHH
T ss_pred             --------------------------------CCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCC
Confidence                                            8999999999998 567788888999999999999996 44 688899


Q ss_pred             CCCeeeCCCcccCccCc-hhhhcCCCCcEEecccCcCcccCCCC----------ccccCCCCcCCcCCCCC
Q 003893          640 NIESLDLSYNKLSWKIP-YQLVELNTLAVFSVAYNNLSGKIPER----------AAQFATFNESSYEGNPF  699 (788)
Q Consensus       640 ~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~l~~N~l~~~~~~~----------~~~~~~l~~~~~~~Np~  699 (788)
                      +|++|++++|+++...+ ..+..+++|+.|++++|++++.+|..          +..++.++.++  +||.
T Consensus       116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i  184 (198)
T 1ds9_A          116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV  184 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred             CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence            99999999999986433 57889999999999999999887653          55666776554  5554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.32  E-value=2.8e-12  Score=134.47  Aligned_cols=109  Identities=17%  Similarity=0.269  Sum_probs=85.4

Q ss_pred             ceEECCCC-cccccCcccccccccCCeEeCCC-CCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecc
Q 003893          594 SGLDLSCN-RLIGHIPPQIGNLTKIQTLNLSH-NNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  671 (788)
Q Consensus       594 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  671 (788)
                      ..++++++ +++ .+|. +..+++|+.|+|++ |+|+++.+..|.++++|++|+|++|+|++..|..|..+++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35677777 777 4666 88888888888885 88887777788888888888888888888888888888888888888


Q ss_pred             cCcCcccCCCCccccCCCCcCCcCCCCCCCCCCC
Q 003893          672 YNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL  705 (788)
Q Consensus       672 ~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~  705 (788)
                      +|+|++..+..+..+. ++.+++.+|++.|+|++
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l  121 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCAL  121 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccCCCcc
Confidence            8888876666555554 77888888888888763

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.21  E-value=2e-11  Score=127.84  Aligned_cols=112  Identities=16%  Similarity=0.146  Sum_probs=91.1

Q ss_pred             CCceEECCC-CcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEec
Q 003893          592 LLSGLDLSC-NRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSV  670 (788)
Q Consensus       592 ~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l  670 (788)
                      +|+.|+|++ |.+++..+..|.++++|+.|+|++|+|+++.|..|.++++|++|+|++|+|++..+..|..++ |+.|++
T Consensus        32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l  110 (347)
T 2ifg_A           32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL  110 (347)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred             CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence            799999996 999998889999999999999999999999999999999999999999999977666666665 999999


Q ss_pred             ccCcCcccCCC-CccccCCCCcCCcCCCCCCCCCC
Q 003893          671 AYNNLSGKIPE-RAAQFATFNESSYEGNPFLCGPP  704 (788)
Q Consensus       671 ~~N~l~~~~~~-~~~~~~~l~~~~~~~Np~~C~~~  704 (788)
                      .+|++.+...- .+..+.......+..+.+.|..+
T Consensus       111 ~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~  145 (347)
T 2ifg_A          111 SGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQ  145 (347)
T ss_dssp             CSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred             eCCCccCCCccHHHHHHHHhCcccccccCCCCCCC
Confidence            99999976431 12222223344455677788654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.20  E-value=1.5e-09  Score=115.04  Aligned_cols=145  Identities=10%  Similarity=0.080  Sum_probs=86.2

Q ss_pred             cccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchh
Q 003893          461 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLH  540 (788)
Q Consensus       461 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~  540 (788)
                      .+..+..|+.+.+..+ +..+...+|.++..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +..+...+|..+.  
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~--  286 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS--  286 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT--
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccc--
Confidence            4555566666666543 22234445566666666666554 44344555666666666666433 3333344444433  


Q ss_pred             hhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeE
Q 003893          541 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTL  620 (788)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  620 (788)
                                                                         +|+.+++.++.++.+...+|.++.+|+.+
T Consensus       287 ---------------------------------------------------~L~~i~l~~~~i~~I~~~aF~~c~~L~~i  315 (379)
T 4h09_A          287 ---------------------------------------------------NLTKVVMDNSAIETLEPRVFMDCVKLSSV  315 (379)
T ss_dssp             ---------------------------------------------------TCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred             ---------------------------------------------------ccccccccccccceehhhhhcCCCCCCEE
Confidence                                                               56666666666666666677777777777


Q ss_pred             eCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCC
Q 003893          621 NLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELN  663 (788)
Q Consensus       621 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~  663 (788)
                      +|..+ ++.+...+|.++++|+.+.+..+ ++.....+|....
T Consensus       316 ~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          316 TLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             EcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            77654 55555667777777877777654 5545555665543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.19  E-value=8e-13  Score=138.62  Aligned_cols=165  Identities=20%  Similarity=0.195  Sum_probs=102.5

Q ss_pred             ccccEEeCCCCccCCCCCcccc-----CCcCCcEEEccCccCcccCcccc-cCCCCCCEEEccCCcCCccCcccccccch
Q 003893          466 LTLMILDLSYNHLNGNIPDRVD-----GLSQLSYLILAHNNLEGEVPIQL-CRLNQLQLLDLSNNNLHGHIPSCFDNTTL  539 (788)
Q Consensus       466 ~~L~~L~l~~n~i~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  539 (788)
                      +.|++|++++|.++......+.     ..++|++|+|++|.++......+ ..+++|++|+|++|.++......+...- 
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L-  150 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL-  150 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH-
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH-
Confidence            4577777777776543222222     22577777777777754322222 2345677888888877644333321110 


Q ss_pred             hhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCccccc----Ccccccccc
Q 003893          540 HERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGH----IPPQIGNLT  615 (788)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~  615 (788)
                                                                     ....+.|++|+|++|.++..    ++..+..++
T Consensus       151 -----------------------------------------------~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~  183 (372)
T 3un9_A          151 -----------------------------------------------LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT  183 (372)
T ss_dssp             -----------------------------------------------HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCS
T ss_pred             -----------------------------------------------HhcCCccceeeCCCCCCChHHHHHHHHHHhcCC
Confidence                                                           00012678888888887642    334446678


Q ss_pred             cCCeEeCCCCCCCCC----CCcccCCCCCCCeeeCCCcccCcc----CchhhhcCCCCcEEecccCcCccc
Q 003893          616 KIQTLNLSHNNLAGP----IPSTFSNLRNIESLDLSYNKLSWK----IPYQLVELNTLAVFSVAYNNLSGK  678 (788)
Q Consensus       616 ~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~l~~N~l~~~  678 (788)
                      +|++|+|++|.|++.    ++..+...++|++|+|++|.|+..    ++..+...++|++|++++|+++..
T Consensus       184 ~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            888888888887642    245566677888888888888753    334455568888888888887653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.19  E-value=1.4e-09  Score=115.16  Aligned_cols=299  Identities=11%  Similarity=0.050  Sum_probs=152.1

Q ss_pred             CCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCce
Q 003893          272 LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWL  351 (788)
Q Consensus       272 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L  351 (788)
                      ..+|+.+.+.. .++.+...+|.++.+|+.+++..+ ++ .++...|.++ +|+.+.+..+ ++.+...+|.+ .+|+.+
T Consensus        45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i  118 (379)
T 4h09_A           45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDF  118 (379)
T ss_dssp             GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEE
T ss_pred             ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceecc-CCcccc
Confidence            45777777754 345455667777777777777643 55 6666666655 5666655432 33344444433 356666


Q ss_pred             eccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCC
Q 003893          352 QLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS  431 (788)
Q Consensus       352 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  431 (788)
                      .+.++. .......|..+ +++.+.+..+ +.......+..+..++.+.+..                        +...
T Consensus       119 ~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~------------------------~~~~  171 (379)
T 4h09_A          119 EFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSS------------------------NNKN  171 (379)
T ss_dssp             ECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECT------------------------TCSS
T ss_pred             cCCCcc-ccccccccccc-eeeeeeccce-eeccccchhccccccccccccc------------------------ccce
Confidence            665432 21333334333 3444433322 2222233344444444444433                        2211


Q ss_pred             CCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCccccc
Q 003893          432 GSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC  511 (788)
Q Consensus       432 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  511 (788)
                      .........        ...    ......+..+..+..+.+...... .....+..+.+|+.+.+..+ +......++.
T Consensus       172 ~~~~~~~~~--------~~~----~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~  237 (379)
T 4h09_A          172 YVAENYVLY--------NKN----KTILESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFY  237 (379)
T ss_dssp             EEEETTEEE--------ETT----SSEEEECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTT
T ss_pred             eecccceec--------ccc----cceeccccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEcccccc
Confidence            000000000        000    000012334444555544433221 33345555666777666544 3334455666


Q ss_pred             CCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccC
Q 003893          512 RLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPS  591 (788)
Q Consensus       512 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~  591 (788)
                      ++..|+.+.+..+ ++.+...+|....                                                     
T Consensus       238 ~~~~L~~i~lp~~-v~~I~~~aF~~~~-----------------------------------------------------  263 (379)
T 4h09_A          238 GMKALDEIAIPKN-VTSIGSFLLQNCT-----------------------------------------------------  263 (379)
T ss_dssp             TCSSCCEEEECTT-CCEECTTTTTTCT-----------------------------------------------------
T ss_pred             CCccceEEEcCCC-ccEeCccccceee-----------------------------------------------------
Confidence            6777777776554 4444444444333                                                     


Q ss_pred             CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecc
Q 003893          592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  671 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  671 (788)
                      .|+.+++..+ +......+|.++++|+.+.+.++.++.+...+|.++++|+.++|..+ ++.....+|.++.+|+.+.+.
T Consensus       264 ~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          264 ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             TCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             hhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            4555555432 44344556677777777777777666566667777777777777543 554555667777777776665


Q ss_pred             cC
Q 003893          672 YN  673 (788)
Q Consensus       672 ~N  673 (788)
                      .+
T Consensus       342 ~~  343 (379)
T 4h09_A          342 KS  343 (379)
T ss_dssp             TT
T ss_pred             Cc
Confidence            43

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.09  E-value=4e-12  Score=133.30  Aligned_cols=135  Identities=19%  Similarity=0.145  Sum_probs=65.8

Q ss_pred             CCCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccc-----cCCCccCceeccCccCccc----CCccCC
Q 003893          297 NFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRN-----FNLTNLIWLQLEGNHFVGE----IPQSLS  367 (788)
Q Consensus       297 ~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~-----~~l~~L~~L~l~~n~~~~~----~~~~~~  367 (788)
                      ++|++|++++|.+++.....+...+++|++|++++|.++......+     ...++|++|++++|.+...    ++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            3445555555544422222222233445555555554443222222     1234555555555555421    122234


Q ss_pred             CCCCCcEEEcccCcCCCCC----CccccCCCCccEEEccCCeeccCc----hhhhhcccCCcEEeccCCcCC
Q 003893          368 KCSSLQGLFLSNNSLSGKI----PRWLGNLTVLRHIIMPKNHIEGPI----PLEFCQLRILQILDISDNNIS  431 (788)
Q Consensus       368 ~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~~~  431 (788)
                      .+++|++|++++|.+++..    +..+...++|++|++++|.++...    ...+...++|++|++++|.+.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            4556666666666554321    233445556666666666665432    233445577777777777664

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.73  E-value=8e-09  Score=107.10  Aligned_cols=162  Identities=15%  Similarity=0.114  Sum_probs=93.8

Q ss_pred             cccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCccccc--CCCCCCEEEccC--CcCCccC-ccccc
Q 003893          461 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLC--RLNQLQLLDLSN--NNLHGHI-PSCFD  535 (788)
Q Consensus       461 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~--n~l~~~~-~~~~~  535 (788)
                      .+..+|+|+.|++++|.-. ..+. +. +++|++|++..|.+.......+.  .+|+|++|+|+.  |...+.. ...+.
T Consensus       167 ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~  243 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR  243 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred             HHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence            4566788888888776311 1222 33 67889999888887644333343  688899998853  2211110 00000


Q ss_pred             ccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCccccc---
Q 003893          536 NTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIG---  612 (788)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~---  612 (788)
                      .                                               .....-.++|+.|+|++|.+....+..+.   
T Consensus       244 ~-----------------------------------------------~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~  276 (362)
T 2ra8_A          244 P-----------------------------------------------LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD  276 (362)
T ss_dssp             G-----------------------------------------------GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCS
T ss_pred             H-----------------------------------------------HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCc
Confidence            0                                               00001124788888888887643333332   


Q ss_pred             ccccCCeEeCCCCCCCCC----CCcccCCCCCCCeeeCCCcccCccCchhhhc-CCCCcEEecccCc
Q 003893          613 NLTKIQTLNLSHNNLAGP----IPSTFSNLRNIESLDLSYNKLSWKIPYQLVE-LNTLAVFSVAYNN  674 (788)
Q Consensus       613 ~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-l~~L~~L~l~~N~  674 (788)
                      .+++|++|+|+.|.+.+.    ++..+..+++|+.|++++|.|+...-..+.. +  ...+++++++
T Consensus       277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            467888888888877643    2333345678888888888777544444443 2  3456666665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.57  E-value=4.3e-08  Score=101.62  Aligned_cols=207  Identities=16%  Similarity=0.172  Sum_probs=111.6

Q ss_pred             CCccEEEcCCcccccCc-c-------chhHhhhcCCCCCEEeCCCCCCCC--c----ccCCCCccCCCCCCCEEEcCCCC
Q 003893           19 KSLKELYMDDARIALNT-S-------FLQIIGESMPSIQYLSLSNSSVSN--N----SRTLDQGLCPLVHLQELHMADND   84 (788)
Q Consensus        19 ~~L~~L~L~~~~~~~~~-~-------~~~~~~~~l~~L~~L~L~~~~l~~--~----~~~l~~~l~~l~~L~~L~L~~n~   84 (788)
                      ..++.|.+..  +.+.+ .       ++.++.. +++|+.|.+.+.....  .    ...+...+..+++|++|+|++|.
T Consensus       107 ~~v~~L~lg~--~~~~~~~~~~~~~~L~~s~~~-l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~  183 (362)
T 2ra8_A          107 PSLKQITIGX--WGYEGEDCSDIADGIVENKEK-FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN  183 (362)
T ss_dssp             GGCSEEEECC--CCSSSCCSHHHHHHHHTTHHH-HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB
T ss_pred             hhcceEEEcc--cccCCCcHHHHHHHHHHhhhh-cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC
Confidence            4566777775  33331 1       1233444 7888888886543211  0    00122334667888888888773


Q ss_pred             CCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhhc--CCCCCCEEEcCC--CcccCccCc----ccc--CCCCCccEEEc
Q 003893           85 LRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLI--HLTSIEDLILSD--NHFQIPISL----EPL--FNHSRLKIFDA  154 (788)
Q Consensus        85 i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~--~l~~L~~L~l~~--n~~~~~~~~----~~l--~~l~~L~~L~l  154 (788)
                      -. .++. + .+++|++|++..|.+...... .+.  .+++|++|+|+.  +...+....    ..+  ..+++|+.|++
T Consensus       184 ~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~-~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L  259 (362)
T 2ra8_A          184 NL-SIGK-K-PRPNLKSLEIISGGLPDSVVE-DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGI  259 (362)
T ss_dssp             TC-BCCS-C-BCTTCSEEEEECSBCCHHHHH-HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEE
T ss_pred             Cc-eecc-c-cCCCCcEEEEecCCCChHHHH-HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeC
Confidence            22 2222 3 378888888887765432211 232  688888888753  221111110    111  24688888888


Q ss_pred             cCCccchhhhccccCCCCcccccEEEccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHh---hcCCCCCEEEc
Q 003893          155 ENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLL---ENNTKLRQLSL  231 (788)
Q Consensus       155 ~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~---~~l~~L~~L~l  231 (788)
                      .+|.+.+........                         ...+++|++|+++.|.+.+..+..+.   ..+++|+.|++
T Consensus       260 ~~~~i~~~~~~~la~-------------------------a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L  314 (362)
T 2ra8_A          260 VDAEEQNVVVEMFLE-------------------------SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM  314 (362)
T ss_dssp             ESCTTHHHHHHHHHH-------------------------CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred             CCCCCchHHHHHHHh-------------------------CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEEC
Confidence            888776433221110                         01245677777777777654333332   34677888888


Q ss_pred             cCCcccCcCccCccC-CCCcCEEEccCCc
Q 003893          232 VNDSLVGPFRLPIHS-HKQLRLLDVSKNN  259 (788)
Q Consensus       232 ~~~~~~~~~~~~~~~-~~~L~~L~l~~n~  259 (788)
                      ++|.+++.....+.. +  ...++++.+.
T Consensus       315 ~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          315 KYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             CSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            777665433222221 1  2456776654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.40  E-value=3.7e-08  Score=92.01  Aligned_cols=124  Identities=16%  Similarity=0.196  Sum_probs=86.6

Q ss_pred             chhHhhhcCCCCCEEeCCCC-CCCCc-ccCCCCccCCCCCCCEEEcCCCCCCCCc----cHhhhcCCCCCEEeCCCCcCc
Q 003893           37 FLQIIGESMPSIQYLSLSNS-SVSNN-SRTLDQGLCPLVHLQELHMADNDLRGSL----PWCLANMTSLRILDVSSNQLI  110 (788)
Q Consensus        37 ~~~~~~~~l~~L~~L~L~~~-~l~~~-~~~l~~~l~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~l~  110 (788)
                      +...+.. .++|++|+|++| .+... ...+...+...++|++|+|++|.+.+..    ...+...++|++|+|++|.+.
T Consensus        28 l~~~l~~-~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           28 LKRIQNN-DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HHHHHTT-CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHHHhc-CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            3445555 788999999998 77543 1222245677888999999999987643    444566788999999999876


Q ss_pred             CC----CChhhhcCCCCCCEEEc--CCCcccCccC---ccccCCCCCccEEEccCCccchh
Q 003893          111 GS----ISSSPLIHLTSIEDLIL--SDNHFQIPIS---LEPLFNHSRLKIFDAENNEINAE  162 (788)
Q Consensus       111 ~~----~~~~~l~~l~~L~~L~l--~~n~~~~~~~---~~~l~~l~~L~~L~l~~n~~~~~  162 (788)
                      +.    +.. .+...+.|++|++  ++|.+.....   ...+...++|+.|++++|.+...
T Consensus       107 ~~g~~~l~~-~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~  166 (185)
T 1io0_A          107 GSGILALVE-ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR  166 (185)
T ss_dssp             HHHHHHHHH-GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred             HHHHHHHHH-HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence            42    122 4566788999999  7888763211   12445568899999999887543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.33  E-value=1.1e-07  Score=88.81  Aligned_cols=119  Identities=18%  Similarity=0.127  Sum_probs=88.7

Q ss_pred             CCCCCCCccEEEcCCccc-ccCcc----chhHhhhcCCCCCEEeCCCCCCCCcc-cCCCCccCCCCCCCEEEcCCCCCCC
Q 003893           14 GFPHFKSLKELYMDDARI-ALNTS----FLQIIGESMPSIQYLSLSNSSVSNNS-RTLDQGLCPLVHLQELHMADNDLRG   87 (788)
Q Consensus        14 ~l~~l~~L~~L~L~~~~~-~~~~~----~~~~~~~~l~~L~~L~L~~~~l~~~~-~~l~~~l~~l~~L~~L~L~~n~i~~   87 (788)
                      .+...++|++|+|++  + .+.+.    +...+.. .++|++|+|++|.+.... ..+.+.+...++|++|+|++|.+.+
T Consensus        31 ~l~~~~~L~~L~L~~--n~~i~~~g~~~l~~~L~~-~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           31 IQNNDPDLEEVNLNN--IMNIPVPTLKACAEALKT-NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHTTCTTCCEEECTT--CTTCCHHHHHHHHHHHTT-CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHhcCCCCCEEEecC--CCCCCHHHHHHHHHHHHh-CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            466789999999999  6 55443    3445555 789999999999986532 1122445667899999999999987


Q ss_pred             C----ccHhhhcCCCCCEEeC--CCCcCcCCCCh---hhhcCCCCCCEEEcCCCccc
Q 003893           88 S----LPWCLANMTSLRILDV--SSNQLIGSISS---SPLIHLTSIEDLILSDNHFQ  135 (788)
Q Consensus        88 ~----~~~~~~~l~~L~~L~L--s~n~l~~~~~~---~~l~~l~~L~~L~l~~n~~~  135 (788)
                      .    +...+...++|++|+|  ++|.+......   ..+...+.|++|++++|.+.
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            5    3556678899999999  88987643211   14556789999999999875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.28  E-value=2.1e-07  Score=91.14  Aligned_cols=39  Identities=26%  Similarity=0.412  Sum_probs=17.6

Q ss_pred             CCCCCEEEcCCCCCCCC--ccHhhhcCCCCCEEeCCCCcCc
Q 003893           72 LVHLQELHMADNDLRGS--LPWCLANMTSLRILDVSSNQLI  110 (788)
Q Consensus        72 l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~Ls~n~l~  110 (788)
                      +++|++|+|++|++++.  +|..+..+++|++|+|++|.+.
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~  209 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  209 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence            44444444444444431  2333444444555555444444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.14  E-value=2e-06  Score=84.22  Aligned_cols=66  Identities=27%  Similarity=0.338  Sum_probs=32.9

Q ss_pred             ccccCCeEeCCCCCCCCC--CCcccCCCCCCCeeeCCCcccCccCchhhhcCC--CCcEEecccCcCcccCC
Q 003893          613 NLTKIQTLNLSHNNLAGP--IPSTFSNLRNIESLDLSYNKLSWKIPYQLVELN--TLAVFSVAYNNLSGKIP  680 (788)
Q Consensus       613 ~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~--~L~~L~l~~N~l~~~~~  680 (788)
                      ++++|+.|+|++|+|+++  +|..+..+++|+.|+|++|+|++.  ..+..+.  +|+.|++++|++++..|
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            445555555555555542  223344555555555555555533  2222222  55555555555555443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.04  E-value=7.8e-07  Score=80.38  Aligned_cols=84  Identities=10%  Similarity=0.065  Sum_probs=39.4

Q ss_pred             CCCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCCc-CcCCCChhhhcCC----CCCCEEEcCCCc-ccCccCccccCCC
Q 003893           73 VHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQ-LIGSISSSPLIHL----TSIEDLILSDNH-FQIPISLEPLFNH  146 (788)
Q Consensus        73 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~l----~~L~~L~l~~n~-~~~~~~~~~l~~l  146 (788)
                      .+|++||+++|.+++..-..+.++++|++|+|++|. +++.. ...+..+    ++|++|++++|. ++ ...+..+..+
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~g-L~~L~~~~~~~~~L~~L~Ls~C~~IT-D~Gl~~L~~~  138 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGC-LERLSQLENLQKSMLEMEIISCGNVT-DKGIIALHHF  138 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHH-HHHHHTCHHHHHHCCEEEEESCTTCC-HHHHHHGGGC
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHH-HHHHHhcccccCCCCEEEcCCCCcCC-HHHHHHHhcC
Confidence            345555555555555444445555555555555553 22111 1122332    245555555553 33 2222334455


Q ss_pred             CCccEEEccCCc
Q 003893          147 SRLKIFDAENNE  158 (788)
Q Consensus       147 ~~L~~L~l~~n~  158 (788)
                      ++|+.|+++++.
T Consensus       139 ~~L~~L~L~~c~  150 (176)
T 3e4g_A          139 RNLKYLFLSDLP  150 (176)
T ss_dssp             TTCCEEEEESCT
T ss_pred             CCCCEEECCCCC
Confidence            566666665553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.01  E-value=2.2e-06  Score=77.37  Aligned_cols=84  Identities=15%  Similarity=0.163  Sum_probs=67.3

Q ss_pred             CCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCC-CCCCccHhhhcC----CCCCEEeCCCCc-CcCCCChhhhc
Q 003893           46 PSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADND-LRGSLPWCLANM----TSLRILDVSSNQ-LIGSISSSPLI  119 (788)
Q Consensus        46 ~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~-i~~~~~~~~~~l----~~L~~L~Ls~n~-l~~~~~~~~l~  119 (788)
                      ..|+.||+++|.++...-   ..+..+++|++|+|++|. +++..-..++.+    ++|++|+|++|. +++.-- ..+.
T Consensus        61 ~~L~~LDLs~~~Itd~GL---~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~  136 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGF---DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALH  136 (176)
T ss_dssp             CCEEEEEEESCCCCGGGG---GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGG
T ss_pred             ceEeEEeCcCCCccHHHH---HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHh
Confidence            469999999999876543   467899999999999995 787666667764    479999999985 553322 2577


Q ss_pred             CCCCCCEEEcCCCc
Q 003893          120 HLTSIEDLILSDNH  133 (788)
Q Consensus       120 ~l~~L~~L~l~~n~  133 (788)
                      ++++|++|++++|.
T Consensus       137 ~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          137 HFRNLKYLFLSDLP  150 (176)
T ss_dssp             GCTTCCEEEEESCT
T ss_pred             cCCCCCEEECCCCC
Confidence            89999999999986

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.97  E-value=8.9e-06  Score=70.24  Aligned_cols=42  Identities=19%  Similarity=0.309  Sum_probs=24.5

Q ss_pred             CCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCCCCCC
Q 003893          664 TLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL  705 (788)
Q Consensus       664 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~  705 (788)
                      +|+.|+|++|.|+...+..+..+..++.+++.+|||.|+|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l   73 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL   73 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence            344555555555544444445555555666777778887764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.09  E-value=0.00022  Score=65.62  Aligned_cols=63  Identities=13%  Similarity=0.156  Sum_probs=30.1

Q ss_pred             cccccCCeEeCCCCCCCCC----CCcccCCCCCCCeeeCCCc---ccCc----cCchhhhcCCCCcEEecccCc
Q 003893          612 GNLTKIQTLNLSHNNLAGP----IPSTFSNLRNIESLDLSYN---KLSW----KIPYQLVELNTLAVFSVAYNN  674 (788)
Q Consensus       612 ~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N---~l~~----~~~~~l~~l~~L~~L~l~~N~  674 (788)
                      ..-+.|++|+|++|.|...    +-+++..-+.|++|+|++|   .+..    .+...+...+.|+.|+++.|.
T Consensus        95 ~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A           95 ETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             hcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            3444555555555555421    1123344455666666544   2221    123344555666666665553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.94  E-value=0.0016  Score=55.87  Aligned_cols=55  Identities=22%  Similarity=0.276  Sum_probs=27.4

Q ss_pred             eEECCCCccc-ccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCccc
Q 003893          595 GLDLSCNRLI-GHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL  651 (788)
Q Consensus       595 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  651 (788)
                      .++.++++++ ..+|..+.  ++|+.|+|++|+|+.+.+..|..+++|++|+|++|++
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4555555554 23333222  2455555555555544444555555555555555544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.85  E-value=0.00028  Score=64.98  Aligned_cols=61  Identities=10%  Similarity=0.114  Sum_probs=31.4

Q ss_pred             CCceEECCCCccccc----CcccccccccCCeEeCCCCCC---CC----CCCcccCCCCCCCeeeCCCcccC
Q 003893          592 LLSGLDLSCNRLIGH----IPPQIGNLTKIQTLNLSHNNL---AG----PIPSTFSNLRNIESLDLSYNKLS  652 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l---~~----~~~~~~~~l~~L~~L~Ls~N~l~  652 (788)
                      .|++|+|++|.|+..    +.+.+..-+.|++|+|++|..   ..    .+.+.+..-+.|++|+++.|.+.
T Consensus        99 tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A           99 SLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             SCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             ccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            455555555555421    223344455666777665432   21    11233444567777777766553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	788
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-17
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.003
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	8e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	8e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-07
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	5e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	1e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	7e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.002

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 84.7 bits (208), Expect = 2e-18
 Identities = 49/270 (18%), Positives = 94/270 (34%), Gaps = 15/270 (5%)

Query: 241 RLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQ 300
           ++P        LLD+  N        +  + L  L    +  N +    P +F  +  L+
Sbjct: 24  KVPKDLPPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 301 FLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVG 360
            L LS NQL  E+PE +      LR        +   +F+   N   ++ L        G
Sbjct: 83  RLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFN-GLNQMIVVELGTNPLKSSG 140

Query: 361 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 420
               +      L  + +++ +++        +LT L    +  N I          L  L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNL 197

Query: 421 QILDISDNNISGSLPS-CYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN 479
             L +S N+IS        +   + ++HL+ N L          +   + ++ L  N+++
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG--LADHKYIQVVYLHNNNIS 255

Query: 480 G------NIPDRVDGLSQLSYLILAHNNLE 503
                    P      +  S + L  N ++
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.0 bits (175), Expect = 3e-14
 Identities = 56/275 (20%), Positives = 94/275 (34%), Gaps = 31/275 (11%)

Query: 299 LQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHF 358
           L+ +  S+  L  ++P+ L         L L NN +         NL NL  L L  N  
Sbjct: 12  LRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 359 VGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE----------- 407
               P + +    L+ L+LS N L     +    L  LR        +            
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 408 ------------GPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHG 455
                       G     F  ++ L  + I+D NI+           + ++HL  N +  
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITK 185

Query: 456 QLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQ 515
                +      L  L LS+N ++      +     L  L L +N L  +VP  L     
Sbjct: 186 VD-AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY 243

Query: 516 LQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQ 550
           +Q++ L NNN+     + F     + +  + S + 
Sbjct: 244 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 278

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.0 bits (149), Expect = 5e-11
 Identities = 41/209 (19%), Positives = 68/209 (32%), Gaps = 9/209 (4%)

Query: 467 TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 526
              +LDL  N +          L  L  LIL +N +    P     L +L+ L LS N L
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 527 HGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQ 586
                           + N  +         +   + V+     L+S      +     +
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 587 GRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDL 646
                 LS + ++   +   IP   G    +  L+L  N +     ++   L N+  L L
Sbjct: 152 ------LSYIRIADTNI-TTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 647 SYNKLSWKIPYQLVELNTLAVFSVAYNNL 675
           S+N +S      L     L    +  N L
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKL 231

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.3 bits (129), Expect = 2e-08
 Identities = 45/296 (15%), Positives = 88/296 (29%), Gaps = 47/296 (15%)

Query: 46  PSIQYLSLSNSSVSNNSRTLDQG-LCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDV 104
           P    L L N    N    +  G    L +L  L + +N +    P   A +  L  L +
Sbjct: 31  PDTALLDLQN----NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 105 SSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEII 164
           S NQL       P     ++++L + +N                               +
Sbjct: 87  SKNQL----KELPEKMPKTLQELRVHENEIT---------------------------KV 115

Query: 165 ESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNT 224
                   N  +   L ++  +              L Y+R++   +             
Sbjct: 116 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP----P 171

Query: 225 KLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNA 284
            L +L L  + +       +     L  L +S N+               L   +++ N 
Sbjct: 172 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNK 230

Query: 285 LDGSIPSSFGNMNFLQFLDLSNNQLTG-----EIPEHLAMGCVSLRSLALSNNNLE 335
           L   +P    +  ++Q + L NN ++        P        S   ++L +N ++
Sbjct: 231 LV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.5 bits (114), Expect = 1e-06
 Identities = 23/87 (26%), Positives = 35/87 (40%)

Query: 589 VPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSY 648
           +P   + LDL  N++         NL  + TL L +N ++   P  F+ L  +E L LS 
Sbjct: 29  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 649 NKLSWKIPYQLVELNTLAVFSVAYNNL 675
           N+L          L  L V       +
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKV 115

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 85.8 bits (211), Expect = 2e-18
 Identities = 59/385 (15%), Positives = 113/385 (29%), Gaps = 41/385 (10%)

Query: 302 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGE 361
             L    +T  + +        + +L      ++         L NL  +    N     
Sbjct: 27  TVLGKTNVTDTVSQ---TDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDI 81

Query: 362 IPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQ 421
            P  L   + L  + ++NN ++   P           +   +     P+       R+  
Sbjct: 82  TP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 139

Query: 422 ILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHG-------------QLKEGTFFNCLTL 468
             +   +  + S  +    +           L                           L
Sbjct: 140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 199

Query: 469 MILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHG 528
             L  + N ++   P  +   + L  L L  N L+      L  L  L  LDL+NN +  
Sbjct: 200 ESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 255

Query: 529 HIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGR 588
             P               + L   +     +  +        L + +     +       
Sbjct: 256 LAPLS-----------GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS 304

Query: 589 VPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSY 648
               L+ L L  N +    P  + +LTK+Q L  ++N ++    S+ +NL NI  L   +
Sbjct: 305 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGH 360

Query: 649 NKLSWKIPYQLVELNTLAVFSVAYN 673
           N++S   P  L  L  +    +   
Sbjct: 361 NQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 84.3 bits (207), Expect = 6e-18
 Identities = 77/364 (21%), Positives = 135/364 (37%), Gaps = 30/364 (8%)

Query: 72  LVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSD 131
           L  +  L      ++ S+   +  + +L  ++ S+NQL       PL +LT + D+++++
Sbjct: 43  LDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDIT---PLKNLTKLVDILMNN 97

Query: 132 NHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITF 191
           N       L  L N + L +F+ +  +I+     ++             +S+        
Sbjct: 98  NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 157

Query: 192 PKFLYNQH-------DLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPI 244
                NQ        +L  +    I  N+     +L   T L  L   N+ +      P+
Sbjct: 158 QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT--PL 215

Query: 245 HSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDL 304
                L  L ++ N  +    L     L+ LT  +++ N +    P     +  L  L L
Sbjct: 216 GILTNLDELSLNGNQLKDIGTLA---SLTNLTDLDLANNQISNLAP--LSGLTKLTELKL 270

Query: 305 SNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQ 364
             NQ++   P        +     L  N  +    S   NL NL +L L  N+     P 
Sbjct: 271 GANQISNISPLAGLTALTN-----LELNENQLEDISPISNLKNLTYLTLYFNNISDISP- 324

Query: 365 SLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILD 424
            +S  + LQ LF +NN +S      L NLT +  +    N I    PL    L  +  L 
Sbjct: 325 -VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLG 379

Query: 425 ISDN 428
           ++D 
Sbjct: 380 LNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 84.3 bits (207), Expect = 7e-18
 Identities = 75/414 (18%), Positives = 135/414 (32%), Gaps = 64/414 (15%)

Query: 248 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNN 307
            +     + K N    +     D ++ L    + + ++DG        +N L  ++ SNN
Sbjct: 22  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNN 76

Query: 308 QLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLS 367
           QLT   P       V +        ++       N     L   Q+     +  +     
Sbjct: 77  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136

Query: 368 KCSSLQGLFL------------SNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFC 415
              S   +               +        + L NLT L  + +  N +         
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LA 194

Query: 416 QLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSY 475
           +L  L+ L  ++N IS   P       ++++ L+ N L      GT  +   L  LDL+ 
Sbjct: 195 KLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLAN 250

Query: 476 NHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFD 535
           N ++   P  + GL++L+ L L  N +    P+          L+ +       I +  +
Sbjct: 251 NQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKN 308

Query: 536 NTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSG 595
            T L   +NN S + P  +                                    + L  
Sbjct: 309 LTYLTLYFNNISDISPVSS-----------------------------------LTKLQR 333

Query: 596 LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYN 649
           L  + N++       + NLT I  L+  HN ++   P   +NL  I  L L+  
Sbjct: 334 LFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.5 bits (135), Expect = 6e-09
 Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 24/225 (10%)

Query: 60  NNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLI 119
           +N  +    L  L +L+ L   +N +    P     +T+L  L ++ NQL        L 
Sbjct: 184 SNKVSDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKDI---GTLA 238

Query: 120 HLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSL 179
            LT++ DL L++N      +L PL   ++L       N+I+           P   L +L
Sbjct: 239 SLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQISNIS--------PLAGLTAL 287

Query: 180 LLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGP 239
                  + +     + N  +L Y+ L    +++  P   + + TKL++L   N+ +   
Sbjct: 288 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFANNKVSDV 344

Query: 240 FRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNA 284
               + +   +  L    N      PL     L+R+T   ++  A
Sbjct: 345 S--SLANLTNINWLSAGHNQISDLTPLAN---LTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 5e-06
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 53  LSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGS 112
           L+  ++  N+ +    +  L  LQ L  A+N +       LAN+T++  L    NQ+   
Sbjct: 309 LTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDL 366

Query: 113 ISSSPLIHLTSIEDLILSDN 132
               PL +LT I  L L+D 
Sbjct: 367 T---PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 51/338 (15%), Positives = 104/338 (30%), Gaps = 34/338 (10%)

Query: 344 NLTNLIWLQLEGNHFVGEIPQS-LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMP 402
            L   +   L   +    + Q+ L + ++LQ   L   S+ G     +  L  L  I   
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFS 74

Query: 403 KNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTF 462
            N +    P     L  L  + +++N          D   +  +     +     +    
Sbjct: 75  NNQLTDITP--LKNLTKLVDILMNNNQ-------IADITPLANLTNLTGLTLFNNQITDI 125

Query: 463 FNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLS 522
                L  L+      N                +   N +    P+      +   +  +
Sbjct: 126 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 185

Query: 523 NNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSIT 582
             +    +    +  +L    N  S + P                   L+        + 
Sbjct: 186 KVSDISVLAKLTNLESLIATNNQISDITPL-------------GILTNLDELSLNGNQLK 232

Query: 583 YTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIE 642
                   + L+ LDL+ N++    P  +  LTK+  L L  N ++   P   + L  + 
Sbjct: 233 DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALT 288

Query: 643 SLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIP 680
           +L+L+ N+   +    +  L  L   ++ +NN+S   P
Sbjct: 289 NLELNENQ--LEDISPISNLKNLTYLTLYFNNISDISP 324

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.6 bits (197), Expect = 3e-17
 Identities = 48/259 (18%), Positives = 79/259 (30%), Gaps = 4/259 (1%)

Query: 270 DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLAL 329
            I +      +  N +     +SF     L  L L +N L            +  +    
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 330 SNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRW 389
            N  L     +    L  L  L L+        P      ++LQ L+L +N+L       
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 390 LGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLS 449
             +L  L H+ +  N I       F  L  L  L +  N ++   P  +  +        
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 450 KNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQ 509
                  L          L  L L+ N    +   R    + L     + + +   +P  
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ- 266

Query: 510 LCRLNQLQLLDLSNNNLHG 528
             RL    L  L+ N+L G
Sbjct: 267 --RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (160), Expect = 2e-12
 Identities = 52/293 (17%), Positives = 82/293 (27%), Gaps = 36/293 (12%)

Query: 361 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 420
            +P  +   ++ Q +FL  N +S            L  + +  N +       F  L +L
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 421 QILDISDNNISGSLPSCYDFVCIEQVHLS-KNMLHGQLKEGTFFNCLTLMILDLSYNHLN 479
           + LD+SDN    S+             L        +L  G F     L  L L  N L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 480 GNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTL 539
               D    L  L++L L  N +          L+ L  L L  N +    P  F +   
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD--- 199

Query: 540 HERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLS 599
                                       + +         S   T        L  L L+
Sbjct: 200 --------------------------LGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233

Query: 600 CNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLS 652
            N  +            +Q    S + +   +P     L   +   L+ N L 
Sbjct: 234 DNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 3e-08
 Identities = 54/264 (20%), Positives = 83/264 (31%), Gaps = 28/264 (10%)

Query: 288 SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTN 347
           ++P         Q + L  N+++          C +L  L L +N L     +    L  
Sbjct: 25  AVPVGIPAA--SQRIFLHGNRISHVPAASFR-ACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 348 LIWLQLEGNHFVGEI-PQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHI 406
           L  L L  N  +  + P +      L  L L    L    P     L  L+++ +  N +
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141

Query: 407 EGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCL 466
           +      F  L  L  L +  N IS                         + E  F    
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISS------------------------VPERAFRGLH 177

Query: 467 TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 526
           +L  L L  N +    P     L +L  L L  NNL       L  L  LQ L L++N  
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

Query: 527 HGHIPSCFDNTTLHERYNNGSSLQ 550
                +      L +   + S + 
Sbjct: 238 VCDCRARPLWAWLQKFRGSSSEVP 261

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 7e-08
 Identities = 37/214 (17%), Positives = 65/214 (30%), Gaps = 4/214 (1%)

Query: 492 LSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQP 551
              + L  N +             L +L L +N L     + F    L E+ +       
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS---DN 90

Query: 552 FETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQI 611
            +   V         +   L       + +       + +L     L  N L        
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL-YLQDNALQALPDDTF 149

Query: 612 GNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA 671
            +L  +  L L  N ++      F  L +++ L L  N+++   P+   +L  L    + 
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 672 YNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL 705
            NNLS    E  A            NP++C    
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 1e-07
 Identities = 41/266 (15%), Positives = 83/266 (31%), Gaps = 14/266 (5%)

Query: 46  PSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVS 105
            + Q + L  + +S+             +L  L +  N L          +  L  LD+S
Sbjct: 32  AASQRIFLHGNRISHVPAAS---FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 106 SNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIE 165
            N  + S+  +    L  +  L L        +        + L+    ++N + A   +
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147

Query: 166 SHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTK 225
           +         L  L L       +    F    H L+ + L   ++    P+   +    
Sbjct: 148 TF---RDLGNLTHLFLHGNRISSVPERAF-RGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 226 LRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNAL 285
           +      N+    P    +   + L+ L ++ N +          + + L  F  S + +
Sbjct: 204 MTLYLFANNLSALPTE-ALAPLRALQYLRLNDNPWVCDCRAR--PLWAWLQKFRGSSSEV 260

Query: 286 DGSIPSSFGNMNFLQFLDLSNNQLTG 311
             S+P             L+ N L G
Sbjct: 261 PCSLPQRLAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 4e-06
 Identities = 43/288 (14%), Positives = 87/288 (30%), Gaps = 36/288 (12%)

Query: 97  TSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAEN 156
            + + + +  N+ I  + ++      ++  L L  N      +          ++  ++N
Sbjct: 32  AASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 157 NEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFP 216
            ++                                P   +    L  + L    + E  P
Sbjct: 91  AQL----------------------------RSVDPATFHGLGRLHTLHLDRCGLQELGP 122

Query: 217 NWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLT 276
                    L+ L L +++L             L  L +  N     +P      L  L 
Sbjct: 123 GL-FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLD 180

Query: 277 VFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG 336
              +  N +    P +F ++  L  L L  N L+  +P        +L+ L L++N    
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVC 239

Query: 337 HMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSG 384
              +R      L   +   +     +PQ L+     +   L+ N L G
Sbjct: 240 DCRARPL-WAWLQKFRGSSSEVPCSLPQRLAGRDLKR---LAANDLQG 283

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 80.2 bits (196), Expect = 6e-17
 Identities = 52/292 (17%), Positives = 103/292 (35%), Gaps = 34/292 (11%)

Query: 420 LQILDISDNNISGSLP---SCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYN 476
           +  LD+S  N+    P   S  +   +  +++                   L  L +++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 477 HLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN 536
           +++G IPD +  +  L  L  ++N L G +P  +  L  L  +    N + G IP  + +
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 537 TTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGL 596
            +        S  +           +++          +     +  + +          
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ------K 225

Query: 597 DLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIP 656
                  +     ++G    +  L+L +N + G +P   + L+ + SL++S         
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS--------- 276

Query: 657 YQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPLPIC 708
                          +NNL G+IP+       F+ S+Y  N  LCG PLP C
Sbjct: 277 ---------------FNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 77.5 bits (189), Expect = 5e-16
 Identities = 54/287 (18%), Positives = 94/287 (32%), Gaps = 32/287 (11%)

Query: 367 SKCSSLQGLFLSNNSLSGK--IPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILD 424
           ++   +  L LS  +L     IP  L NL  L  + +   +                   
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN------------------- 87

Query: 425 ISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPD 484
              N +    P+      +  ++++   + G           TL+ LD SYN L+G +P 
Sbjct: 88  ---NLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPP 143

Query: 485 RVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYN 544
            +  L  L  +    N + G +P      ++L      + N                  +
Sbjct: 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVD 203

Query: 545 NGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLI 604
                            +     K   +             +  +   L+GLDL  NR+ 
Sbjct: 204 LS------RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY 257

Query: 605 GHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 651
           G +P  +  L  + +LN+S NNL G IP    NL+  +    + NK 
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.0 bits (154), Expect = 1e-11
 Identities = 39/266 (14%), Positives = 74/266 (27%), Gaps = 14/266 (5%)

Query: 72  LVHLQELHMADNDLRG--SLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLIL 129
              +  L ++  +L     +P  LAN+  L  L +     +       +  LT +  L +
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108

Query: 130 SDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTP-NFQLQSLLLSSGYRDG 188
           +  +    I        + + +  + N           SL            +S    D 
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 189 ITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHK 248
                 L+    +   RL+           L   +                    +    
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM---------LEGDASVLFGS 219

Query: 249 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ 308
                 +          L    +   L   ++  N + G++P     + FL  L++S N 
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 309 LTGEIPEHLAMGCVSLRSLALSNNNL 334
           L GEIP+            A +NN  
Sbjct: 280 LCGEIPQ--GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 55/250 (22%), Positives = 88/250 (35%), Gaps = 50/250 (20%)

Query: 340 SRNFNLTNLIWLQLEGNHFVG--EIPQSLSKCSSLQGLFLSNN-SLSGKIPRWLGNLTVL 396
             +     +  L L G +      IP SL+    L  L++    +L G IP  +  LT L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 397 RHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSC-YDFVCIEQVHLSKNMLHG 455
            ++ +   ++ G IP    Q++ L  LD S N +SG+LP        +  +    N + G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 456 QLKEGTFFNCLTLMILDLSYNHLNGNIP-------------------------------- 483
            + +           + +S N L G IP                                
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 484 --------------DRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGH 529
                          +V     L+ L L +N + G +P  L +L  L  L++S NNL G 
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 530 IPSCFDNTTL 539
           IP   +    
Sbjct: 284 IPQGGNLQRF 293

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.5 bits (132), Expect = 9e-09
 Identities = 63/271 (23%), Positives = 98/271 (36%), Gaps = 25/271 (9%)

Query: 168 SLTTPNFQLQSLLLSSGYRDG-ITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKL 226
              T  +++ +L LS          P  L N   L ++ +  I          +   T+L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 227 RQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALD 286
             L + + ++ G     +   K L  LD S N   G +P  I  +   L       N + 
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL-PNLVGITFDGNRIS 162

Query: 287 GSIPSSFGNMNFLQF-LDLSNNQLTGEIPEHLAMGCVSLRS------------------- 326
           G+IP S+G+ + L   + +S N+LTG+IP   A   ++                      
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 327 --LALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSG 384
                   N       +     NL  L L  N   G +PQ L++   L  L +S N+L G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 385 KIPRWLGNLTVLRHIIMPKNHIEGPIPLEFC 415
           +IP+  GNL          N      PL  C
Sbjct: 283 EIPQ-GGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (152), Expect = 5e-11
 Identities = 52/446 (11%), Positives = 105/446 (23%), Gaps = 17/446 (3%)

Query: 250 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDG----SIPSSFGNMNFLQFLDLS 305
           ++ LD+           E+  +L +  V  +    L       I S+      L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 306 NNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQS 365
           +N+L       +  G +   S  +   +L+    +          L+         +  +
Sbjct: 64  SNELGDVGVHCVLQG-LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 366 LSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDI 425
           L   + LQ L         ++ +       L                +F +L +      
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 426 SDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDR 485
                            +E + L    +             +   L       N      
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 486 VDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNN 545
           +  L        +           +       L  +          S   N    E    
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 546 GSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIG 605
                      +    +          S   +  +          S     D        
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE--- 359

Query: 606 HIPPQIGNLTKIQTLNLSHNNL----AGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVE 661
                    + ++ L L+  ++       + +T     ++  LDLS N L      QLVE
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 662 -----LNTLAVFSVAYNNLSGKIPER 682
                   L    +     S ++ +R
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (124), Expect = 1e-07
 Identities = 57/449 (12%), Positives = 120/449 (26%), Gaps = 21/449 (4%)

Query: 98  SLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQ---IPISLEPLFNHSRLKIFDA 154
            ++ LD+   +L  +  +  L  L   + + L D              L  +  L   + 
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 155 ENNEINAEIIES--HSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMN 212
            +NE+    +      L TP+ ++Q L L +    G            L  ++  H+  N
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 213 EEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDIL 272
                 L      L       + L   +     +  +     +        + +   DI 
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI- 181

Query: 273 SRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNN 332
                    +  L   +  S   +  L+                +     SLR LAL +N
Sbjct: 182 -----NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 236

Query: 333 NLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGN 392
            L     +           +L           +       + L    +     +      
Sbjct: 237 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 296

Query: 393 LTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNM 452
               R +          +   + +         S  +   +       + I      ++ 
Sbjct: 297 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDA 355

Query: 453 LHGQLKEGTFFNCLTLMILDLSYNHLNGN----IPDRVDGLSQLSYLILAHNNLEGEVPI 508
              +L +G       L +L L+   ++ +    +   +     L  L L++N L     +
Sbjct: 356 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 415

Query: 509 QLCR-----LNQLQLLDLSNNNLHGHIPS 532
           QL          L+ L L +      +  
Sbjct: 416 QLVESVRQPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 7e-06
 Identities = 44/476 (9%), Positives = 111/476 (23%), Gaps = 42/476 (8%)

Query: 200 DLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSL----VGPFRLPIHSHKQLRLLDV 255
           D++ + +   ++++     LL    + + + L +  L           +  +  L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 256 SKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPE 315
             N         +   L   +     ++  +  +  +   +       L   Q       
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 316 HLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGL 375
            L    + L    L +           +   +    +   +    +        S+    
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 376 FLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLP 435
                 L   +      L  L+                    +         +N  G + 
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 436 SCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYL 495
                  +         L       T   C  L  +  +   L        +   + +  
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR- 301

Query: 496 ILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETS 555
                                             +       +L  +  + ++      S
Sbjct: 302 ----------------------------LLCETLLEPGCQLESLWVKSCSFTAACCSHFS 333

Query: 556 FVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRL----IGHIPPQI 611
            V+     +   +      +           G+  S+L  L L+   +       +   +
Sbjct: 334 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL 393

Query: 612 GNLTKIQTLNLSHNNLAGPIPSTFS-----NLRNIESLDLSYNKLSWKIPYQLVEL 662
                ++ L+LS+N L                  +E L L     S ++  +L  L
Sbjct: 394 LANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 1e-04
 Identities = 55/462 (11%), Positives = 111/462 (24%), Gaps = 30/462 (6%)

Query: 47  SIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRG----SLPWCLANMTSLRIL 102
            IQ L +    +S+      + L  L   Q + + D  L       +   L    +L  L
Sbjct: 3   DIQSLDIQCEELSDAR--WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 103 DVSSNQL----IGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNE 158
           ++ SN+L    +  +          I+ L L +                 L      +  
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 159 INAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNW 218
            N        L                         L               +    P++
Sbjct: 121 DNLLGDAGLQLLCEGLLDP---------QCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 171

Query: 219 LLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVF 278
                +           L    +      + L+L      +        I    + L   
Sbjct: 172 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 231

Query: 279 NISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHM 338
            +  N L     +            L    +          G +     A  +       
Sbjct: 232 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 291

Query: 339 FSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRH 398
            +   +    +  +             +  CS         +S+  +    L        
Sbjct: 292 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR 351

Query: 399 IIMPKNHIEGPIPLEFCQLRILQILDISDNNISG----SLPSCY-DFVCIEQVHLSKNML 453
           +             +   +  L++L ++D ++S     SL +       + ++ LS N L
Sbjct: 352 LEDAGVRELCQGLGQPGSV--LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 409

Query: 454 HGQ----LKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQ 491
                  L E        L  L L   + +  + DR+  L +
Sbjct: 410 GDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 1e-04
 Identities = 23/102 (22%), Positives = 33/102 (32%), Gaps = 14/102 (13%)

Query: 290 PSSFGNMNFLQFLDLSNNQLTGEIPEHLAMG---CVSLRSLALSNNNLEGHMFSR----- 341
                  + L+ L L++  ++      LA       SLR L LSNN L      +     
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 342 NFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLS 383
                 L  L L   ++  E+         LQ L     SL 
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMED------RLQALEKDKPSLR 457

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 2e-09
 Identities = 44/291 (15%), Positives = 88/291 (30%), Gaps = 24/291 (8%)

Query: 253 LDVSKNNFQGHIPLEIGDILSR-LTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTG 311
           LD++  N     P   G +LS+ +  F    + +D  +   F     +Q +DLSN+ +  
Sbjct: 5   LDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEV 60

Query: 312 EIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSS 371
                +   C  L++L+L    L   + +     +NL+ L L G     E          
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-- 118

Query: 372 LQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNIS 431
                 S          +      ++  +   +     + L   +          +   S
Sbjct: 119 ----SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR---------KNLQKS 165

Query: 432 GSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSY-NHLNGNIPDRVDGLS 490
                      +  + LS +++        FF    L  L LS    +       +  + 
Sbjct: 166 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 225

Query: 491 QLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE 541
            L  L +     +G + +       L  L ++ ++          N    E
Sbjct: 226 TLKTLQVFGIVPDGTLQL---LKEALPHLQINCSHFTTIARPTIGNKKNQE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 1e-05
 Identities = 36/241 (14%), Positives = 80/241 (33%), Gaps = 10/241 (4%)

Query: 418 RILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNH 477
           + +       + +   L   +    ++ + LS +++      G    C  L  L L    
Sbjct: 23  QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82

Query: 478 LNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQ-----LCRLNQLQLLDLSNNNLHGHIPS 532
           L+  I + +   S L  L L+  +   E  +Q       RL++L L    +        +
Sbjct: 83  LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 142

Query: 533 CFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSL 592
               +    + N     +  + S +            +  S     K+  +    ++  L
Sbjct: 143 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 202

Query: 593 LSGLDLS-CNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKL 651
              L LS C  +I     ++G +  ++TL +      G +      L +   L ++ +  
Sbjct: 203 QH-LSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH---LQINCSHF 258

Query: 652 S 652
           +
Sbjct: 259 T 259

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 39/314 (12%), Positives = 84/314 (26%), Gaps = 52/314 (16%)

Query: 302 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGE 361
           LDL+   L  ++   L      + +     + ++  +   +F+   +  + L  +     
Sbjct: 5   LDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS 61

Query: 362 -IPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 420
            +   LS+CS LQ L L    LS  I   L   + L  + +                   
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS--------------- 106

Query: 421 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG 480
              + +   +  S     +         ++  +   +   +       +         + 
Sbjct: 107 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD 166

Query: 481 NIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSN-NNLHGHIPSCFDNTTL 539
                    + +   +     L+ +   +  +LN LQ L LS   ++             
Sbjct: 167 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI-- 224

Query: 540 HERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLS 599
                                     P  + L+ F              +   L  L ++
Sbjct: 225 --------------------------PTLKTLQVFGIVPDGTL----QLLKEALPHLQIN 254

Query: 600 CNRLIGHIPPQIGN 613
           C+       P IGN
Sbjct: 255 CSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 39/268 (14%), Positives = 83/268 (30%), Gaps = 10/268 (3%)

Query: 10  LSGQGFPHFKSLKELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGL 69
           L         S   +     R  ++    +    S   +Q++ LSNS +  ++  L   L
Sbjct: 12  LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHF--SPFRVQHMDLSNSVIEVST--LHGIL 67

Query: 70  CPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLI---GSISSSPLIHLTSIED 126
                LQ L +    L   +   LA  ++L  L++S           +           +
Sbjct: 68  SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 127

Query: 127 LILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYR 186
           L    +  +  + +        +   +      N +  +  +L      L  L LS    
Sbjct: 128 LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 187

Query: 187 DGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHS 246
                 +  +  + L+++ LS            L     L+ L +      G  +     
Sbjct: 188 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ---LL 244

Query: 247 HKQLRLLDVSKNNFQGHIPLEIGDILSR 274
            + L  L ++ ++F       IG+  ++
Sbjct: 245 KEALPHLQINCSHFTTIARPTIGNKKNQ 272

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 4e-05
 Identities = 31/241 (12%), Positives = 70/241 (29%), Gaps = 12/241 (4%)

Query: 204 VRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGH 263
           + L+   ++ +    LL       +                 S  +++ +D+S +  +  
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHF---SPFRVQHMDLSNSVIEVS 61

Query: 264 IPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDL-SNNQLTGEIPEHLAMGCV 322
               I    S+L   ++    L   I ++    + L  L+L   +  +    + L   C 
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 323 SLRSLALSNNNLEGHMFSRNFNLTNLIWLQ-------LEGNHFVGEIPQSLSKCSSLQGL 375
            L  L LS          +         +         +               + +   
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 376 FLSNNSLSGKIPRWLGNLTVLRHIIMPK-NHIEGPIPLEFCQLRILQILDISDNNISGSL 434
              +  L     +    L  L+H+ + +   I     LE  ++  L+ L +      G+L
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 435 P 435
            
Sbjct: 242 Q 242

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 6e-04
 Identities = 36/231 (15%), Positives = 74/231 (32%), Gaps = 10/231 (4%)

Query: 175 QLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVND 234
            + +      + D      F  +   ++++ LS+  +     + +L   +KL+ LSL   
Sbjct: 24  GVIAFRCPRSFMDQPLAEHF--SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81

Query: 235 SLVGPFRLPIHSHKQLRLLDVSKN-NFQGHIPLEIGDILSRLTVFNI------SMNALDG 287
            L  P    +  +  L  L++S    F       +    SRL   N+      +   +  
Sbjct: 82  RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 141

Query: 288 SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTN 347
           ++      +  L       N    ++   +      +      +  L+   F   F L  
Sbjct: 142 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 201

Query: 348 LIWLQLEG-NHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLR 397
           L  L L      + E    L +  +L+ L +      G +      L  L+
Sbjct: 202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 7e-04
 Identities = 44/272 (16%), Positives = 92/272 (33%), Gaps = 18/272 (6%)

Query: 129 LSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDG 188
           L+  +   P     L +   +  F    + ++  + E  S      ++Q + LS+   + 
Sbjct: 7   LTGKNLH-PDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPF----RVQHMDLSNSVIEV 60

Query: 189 ITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHK 248
            T    L     L+ + L  +++++   N  L  N+ L +L+L   S    F L      
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 249 QLRLLDVSKNNFQGHIPLEIGDILSR-------LTVFNISMNALDGSIPSSFGNMNFLQF 301
             RL +++ +         +   ++        L +     N     + +       L  
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 302 LDLSNNQLTGEIPEHLAMGCVSLRSLALSN-NNLEGHMFSRNFNLTNLIWLQLEGNHFVG 360
           LDLS++ +              L+ L+LS   ++          +  L  LQ+ G    G
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG 239

Query: 361 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGN 392
            +         LQ   ++ +  +      +GN
Sbjct: 240 TLQLLKEALPHLQ---INCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.003
 Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 1/94 (1%)

Query: 573 SFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNL-AGPI 631
           + D T K++     GR+ S            +     +  +  ++Q ++LS++ +    +
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 63

Query: 632 PSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTL 665
               S    +++L L   +LS  I   L + + L
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL 97

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 4e-09
 Identities = 35/182 (19%), Positives = 60/182 (32%), Gaps = 4/182 (2%)

Query: 346 TNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNH 405
            +   L L  N        +L   + L  L L    L+         L VL  + +  N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQ 88

Query: 406 IEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNC 465
           ++    L      +  +    +   S  L +      +++++L  N     L  G     
Sbjct: 89  LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPT 147

Query: 466 LTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNN 525
             L  L L+ N+L       ++GL  L  L+L  N+L   +P      + L    L  N 
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206

Query: 526 LH 527
             
Sbjct: 207 WL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 5e-08
 Identities = 45/179 (25%), Positives = 61/179 (34%), Gaps = 5/179 (2%)

Query: 361 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 420
            +P  L K      L LS N L       L   T L  + +  +  E         L +L
Sbjct: 24  ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL--DRAELTKLQVDGTLPVL 79

Query: 421 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG 480
             LD+S N +            +  + +S N L   L  G       L  L L  N L  
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKT 138

Query: 481 NIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTL 539
             P  +    +L  L LA+NNL       L  L  L  L L  N+L+      F +  L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 9e-08
 Identities = 33/205 (16%), Positives = 65/205 (31%), Gaps = 8/205 (3%)

Query: 250 LRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQL 309
              ++  K N    +P ++       T+ ++S N L     ++      L  L+L   + 
Sbjct: 12  HLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE- 66

Query: 310 TGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKC 369
              + +    G + +      ++N    +      L  L  L +  N        +L   
Sbjct: 67  ---LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 370 SSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNN 429
             LQ L+L  N L    P  L     L  + +  N++          L  L  L + +N+
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 430 ISGSLPSCYDFVCIEQVHLSKNMLH 454
           +       +    +    L  N   
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 35/212 (16%), Positives = 64/212 (30%), Gaps = 12/212 (5%)

Query: 464 NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSN 523
              + + ++    +L   +P  +      + L L+ N L       L    +L  L+L  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 524 NNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITY 583
             L                     +L         +  +        +    F   +   
Sbjct: 65  AELTKLQVDGT--------LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116

Query: 584 TYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIES 643
               R    L  L L  N L    P  +    K++ L+L++NNL        + L N+++
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176

Query: 644 LDLSYNKLSWKIPYQLVELNTLAVFSVAYNNL 675
           L L  N   + IP      + L    +  N  
Sbjct: 177 LLLQENS-LYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 6e-04
 Identities = 43/188 (22%), Positives = 66/188 (35%), Gaps = 8/188 (4%)

Query: 242 LPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQF 301
           LP    K   +L +S+N         +    +RLT  N     LD +  +       L  
Sbjct: 25  LPPDLPKDTTILHLSENLLYTFSLATLMP-YTRLTQLN-----LDRAELTKLQVDGTLPV 78

Query: 302 LDLSNNQLTGEIPEHL-AMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVG 360
           L   +          L      +L  L +S N L          L  L  L L+GN    
Sbjct: 79  LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138

Query: 361 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 420
             P  L+    L+ L L+NN+L+      L  L  L  +++ +N +   IP  F    +L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197

Query: 421 QILDISDN 428
               +  N
Sbjct: 198 PFAFLHGN 205

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 3e-07
 Identities = 31/193 (16%), Positives = 66/193 (34%), Gaps = 15/193 (7%)

Query: 464 NCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSN 523
                +  +L    +   +    + L+ +  +I  +++++    IQ   L  +  L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNG 77

Query: 524 NNLHGHIP---------SCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESF 574
           N L    P            D   + +  +     +    S    G  D++    + +  
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 575 DFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPST 634
                +   T    +  L     LS           +  LTK+Q L LS N+++      
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRA 195

Query: 635 FSNLRNIESLDLS 647
            + L+N++ L+L 
Sbjct: 196 LAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 8e-06
 Identities = 27/194 (13%), Positives = 59/194 (30%), Gaps = 20/194 (10%)

Query: 344 NLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPK 403
                I   L+       + Q+  + +S+  +  +N+ +       +  L  +  + +  
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 404 NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFF 463
           N +    PL   +      LD +      SL        +   H   + ++G +      
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 464 NCLTLMILDLSYNHLNGNIPDRVD--------------GLSQLSYLILAHNNLEGEVPIQ 509
           +             L+                      GL++L  L L+ N++       
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRA 195

Query: 510 LCRLNQLQLLDLSN 523
           L  L  L +L+L +
Sbjct: 196 LAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 8e-04
 Identities = 36/209 (17%), Positives = 68/209 (32%), Gaps = 33/209 (15%)

Query: 264 IPLEIGDI-----LSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLA 318
           +P  I  I      +     N+   ++  ++  +   +N +  +  +N+ +         
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQ-- 65

Query: 319 MGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWL------------------QLEGNHFVG 360
               ++  L L+ N L       N      ++L                   L   H   
Sbjct: 66  -YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124

Query: 361 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 420
                L     L+ L+L NN ++         LT L  + +  N I   +P     L  L
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDIVP--LAGLTKL 180

Query: 421 QILDISDNNISGSLPSCYDFVCIEQVHLS 449
           Q L +S N+IS  L +      ++ + L 
Sbjct: 181 QNLYLSKNHIS-DLRALAGLKNLDVLELF 208

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 6e-07
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 8/138 (5%)

Query: 291 SSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIW 350
           + + N    + LDL   ++   + E+L        ++  S+N +          L  L  
Sbjct: 12  AQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 351 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSG----KIPRWLGNLTVLRHIIMPKNHI 406
           L +  N               L  L L+NNSL           L +LT L  +  P  + 
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 407 EGPIPLEFCQLRILQILD 424
           +        ++  +++LD
Sbjct: 128 KHYRLYVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 5e-05
 Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 609 PQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSW 653
            Q  N  + + L+L    +   I +  + L   +++D S N++  
Sbjct: 12  AQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK 55

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.8 bits (117), Expect = 7e-07
 Identities = 52/315 (16%), Positives = 90/315 (28%), Gaps = 19/315 (6%)

Query: 369 CSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDN 428
                 L L+N  LS  +P    +L  L   +   N +   +P     L+ L + + +  
Sbjct: 37  DRQAHELELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQSLKSLLVDNNNLK 91

Query: 429 NISGSLPSCYDFVCIEQVHLSKNMLHG------QLKEGTFFNCLTLMILDLSYNHLNGNI 482
            +S   P                 L           +      L  +   L +     N 
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 483 PDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHER 542
            + +  L  L +L   + +      +    L+   ++  +N              T    
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 543 YNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNR 602
            NN     P     +    +  +    + E     T            S L       N 
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 603 LIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVEL 662
               I         ++ LN+S+N L   +P+    L   E L  S+N L+ ++P     L
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRL---ERLIASFNHLA-EVPELPQNL 326

Query: 663 NTLAVFSVAYNNLSG 677
             L    V YN L  
Sbjct: 327 KQL---HVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 9e-07
 Identities = 47/320 (14%), Positives = 95/320 (29%), Gaps = 22/320 (6%)

Query: 241 RLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQ 300
           RL     +Q   L+++           + ++   L     S N+L   +P    ++  L 
Sbjct: 31  RLRDCLDRQAHELELNNLGLS-----SLPELPPHLESLVASCNSLT-ELPELPQSLKSLL 84

Query: 301 FLDLSNNQLTGEIP----------EHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIW 350
             + +   L+   P          +   +  +   S     +     +        +L +
Sbjct: 85  VDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 144

Query: 351 LQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPI 410
           +    N              +      ++      +P  L ++    +I+     ++   
Sbjct: 145 IAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLP 204

Query: 411 PLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMI 470
            L         +  + D   S    +  D    +   L +++    + E  F     L  
Sbjct: 205 FLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 264

Query: 471 LDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHI 530
                N  +  I    D    L  L +++N L  E+P    R   L+ L  S N+L   +
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHL-AEV 319

Query: 531 PSCFDN-TTLHERYNNGSSL 549
           P    N   LH  YN     
Sbjct: 320 PELPQNLKQLHVEYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 7e-05
 Identities = 52/307 (16%), Positives = 88/307 (28%), Gaps = 16/307 (5%)

Query: 33  LNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELH---MADNDLRGSL 89
           LN   L  + E  P ++ L  S     N+   L +    L  L   +    A +DL   L
Sbjct: 45  LNNLGLSSLPELPPHLESLVASC----NSLTELPELPQSLKSLLVDNNNLKALSDLPPLL 100

Query: 90  PWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRL 149
            +   +   L  L    N     I       L  + DL  S        +        + 
Sbjct: 101 EYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQN 160

Query: 150 KIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHI 209
             F       N  + +   L      + +          +    FL   +    +  +  
Sbjct: 161 LPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP 220

Query: 210 KMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIG 269
            +        + +N       L            I S       ++   N   +    + 
Sbjct: 221 DLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLC 280

Query: 270 DILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLAL 329
           D+   L   N+S N L   +P+       L+ L  S N L  E+PE       +L+ L +
Sbjct: 281 DLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQ----NLKQLHV 331

Query: 330 SNNNLEG 336
             N L  
Sbjct: 332 EYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 9e-05
 Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 14/136 (10%)

Query: 196 YNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDV 255
            + +  +   L       +    +    ++L       ++     R        L  L+V
Sbjct: 232 RDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNV 291

Query: 256 SKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPE 315
           S N        E+  +  RL     S N L   +P    N   L+ L +  N L  E P+
Sbjct: 292 SNNKLI-----ELPALPPRLERLIASFNHL-AEVPELPQN---LKQLHVEYNPLR-EFPD 341

Query: 316 HLAMGCVSLRSLALSN 331
                  S+  L +++
Sbjct: 342 IPE----SVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 56/335 (16%), Positives = 97/335 (28%), Gaps = 26/335 (7%)

Query: 70  CPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLIL 129
           C      EL + +  L  SLP    +   L  L  S N L   +   P     S++ L++
Sbjct: 35  CLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSL-TELPELP----QSLKSLLV 85

Query: 130 SDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGI 189
            +N+ +    L PL  +  +     E             +   N  L+ L       + I
Sbjct: 86  DNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFI 145

Query: 190 TFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQ 249
                   +            +  +  +     +  L   S+V  + +      + +   
Sbjct: 146 AAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPF 205

Query: 250 LRLLDVSKNNFQGHIPLEIG-------DILSRLTVFNISMNALDGSIPSSFGNMNFLQFL 302
           L  +    N  +    L          D                    + F  ++ L   
Sbjct: 206 LTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN 265

Query: 303 DLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEI 362
               N  + EI         SL  L +SNN L             L  L    NH   E+
Sbjct: 266 LYYLNASSNEIRSLC-DLPPSLEELNVSNNKLI----ELPALPPRLERLIASFNHL-AEV 319

Query: 363 PQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLR 397
           P+      +L+ L +  N L  + P    ++  LR
Sbjct: 320 PELP---QNLKQLHVEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 43/294 (14%), Positives = 84/294 (28%), Gaps = 17/294 (5%)

Query: 273 SRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLA------MGCVSLRS 326
            +     ++   L  S+P    +   L+ L  S N LT E+PE         +   +L++
Sbjct: 38  RQAHELELNNLGL-SSLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 327 LALSNNNLEGHMFSRNFNLTNLIWLQL----EGNHFVGEIPQSLSKCSSLQGLFLSNNSL 382
           L+     LE    S N                 +     + +      SL+ +   NN L
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 383 SGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVC 442
                          +           +PL    +     +      +         +  
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 443 IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNL 502
              +    ++           N LT +              +   GLS+L   +   N  
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 503 EGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDN-TTLHERYNNGSSLQPFETS 555
             E+         L+ L++SNN L   +P+       L   +N+ + +     +
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLIASFNHLAEVPELPQN 325

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 48.3 bits (113), Expect = 2e-06
 Identities = 38/304 (12%), Positives = 80/304 (26%), Gaps = 22/304 (7%)

Query: 361 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLG-------NLTVLRHIIMPKNHIEGPIPLE 413
            +   L +  S++ + LS N++  +  RWL        +L +     +    ++  IP  
Sbjct: 22  SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81

Query: 414 FCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDL 473
              L    +     + +  S  +         +         +                +
Sbjct: 82  LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 474 SYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSC 533
           +       +  +      L  +I   N LE     +  +  Q      S+  LH      
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ------SHRLLHTVKMVQ 195

Query: 534 FDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLL 593
                    +     L   +   V+    +                       G    LL
Sbjct: 196 NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 255

Query: 594 SGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPST-----FSNLRNIESLDLSY 648
           S        ++            +QTL L +N +      T        + ++  L+L+ 
Sbjct: 256 S--ARGAAAVVDAFS--KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 311

Query: 649 NKLS 652
           N+ S
Sbjct: 312 NRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.2 bits (92), Expect = 7e-04
 Identities = 39/331 (11%), Positives = 94/331 (28%), Gaps = 34/331 (10%)

Query: 248 KQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDG----SIPSSFGNMNFLQFLD 303
           K L+L  ++  + +    + +      +    +S N +       +  +  +   L+  +
Sbjct: 8   KSLKLDAITTEDEKSVFAVLLE--DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 65

Query: 304 LSNNQLTGEIPEHLAMGCVSLRSLALSNNNLE---GHMFSRNFNLTNLIWLQLEGNHFVG 360
            S+      + + +      L    L    L        +        +   L  +  + 
Sbjct: 66  FSDIFTG-RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 361 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQ---- 416
            +    +      G  ++       + +   N   LR II  +N +E     E+ +    
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184

Query: 417 ---------LRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLT 467
                    ++     +  ++ +   L  C +   ++    +   L          +   
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 244

Query: 468 LMILDLSYNHLNGNIPDRV------DGLSQLSYLILAHNNLEGEVPIQLC-----RLNQL 516
           L  L L+   L+      V           L  L L +N +E +    L      ++  L
Sbjct: 245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304

Query: 517 QLLDLSNNNLHGHIPSCFDNTTLHERYNNGS 547
             L+L+ N          +   +      G 
Sbjct: 305 LFLELNGNRFSEEDDVVDEIREVFSTRGRGE 335

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.2 bits (108), Expect = 5e-06
 Identities = 29/238 (12%), Positives = 75/238 (31%), Gaps = 27/238 (11%)

Query: 94  ANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFD 153
             + +   +    + +  +++ +    L  I  L           ++E +   + L   +
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLE 69

Query: 154 AENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNE 213
            ++N+I       +           L   +         K +     L+ ++   +   +
Sbjct: 70  LKDNQITDLAPLKN-----------LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ 118

Query: 214 EFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILS 273
                 L   + L+ L L  + +     L   ++ Q   +  ++ +    +         
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLS----- 173

Query: 274 RLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSN 331
           +LT      N +    P    ++  L  + L NNQ++   P        +L  + L+N
Sbjct: 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA---NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 27/198 (13%), Positives = 62/198 (31%), Gaps = 15/198 (7%)

Query: 468 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 527
            + +    +++   +      L  ++ L      +     +Q   LN L  L+L +N + 
Sbjct: 21  AIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKDNQIT 76

Query: 528 GHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQG 587
              P            +          + +           QI +       S       
Sbjct: 77  DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 136

Query: 588 RVPSLLSGLDLSCNRLIGHI---------PPQIGNLTKIQTLNLSHNNLAGPIPSTFSNL 638
            +  + +   L+    + ++            + NL+K+ TL    N ++   P   ++L
Sbjct: 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASL 194

Query: 639 RNIESLDLSYNKLSWKIP 656
            N+  + L  N++S   P
Sbjct: 195 PNLIEVHLKNNQISDVSP 212

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 29/210 (13%), Positives = 61/210 (29%), Gaps = 18/210 (8%)

Query: 447 HLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEV 506
              K+ +   +   T  +   +  L      +   I   V  L+ L  L L  N +    
Sbjct: 25  AAGKSNVTDTV---TQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQITDLA 79

Query: 507 PIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDP 566
           P++         L  +       I       TL       + + P      +        
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139

Query: 567 KKQILESFDFTTKSITYTYQGRVPSL---------LSGLDLSCNRLIGHIPPQIGNLTKI 617
           +   +      T     +      S          L+ L    N++    P  + +L  +
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNL 197

Query: 618 QTLNLSHNNLAGPIPSTFSNLRNIESLDLS 647
             ++L +N ++   P   +N  N+  + L+
Sbjct: 198 IEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 3/117 (2%)

Query: 590 PSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPS-TFSNLRNIESLDLSY 648
           P   SGL  + +  +      +     +  L + +      +       L  + +L +  
Sbjct: 7   PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 649 NKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL 705
           + L +  P        L+  ++++N L   +  +  Q  +  E    GNP  C   L
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCAL 121

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 7e-05
 Identities = 19/134 (14%), Positives = 34/134 (25%)

Query: 288 SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTN 347
                      L  L + N Q    +      G   LR+L +  + L             
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 348 LIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE 407
           L  L L  N       +++   S  + +   N        RWL          +P+  ++
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQ 141

Query: 408 GPIPLEFCQLRILQ 421
                    +    
Sbjct: 142 CHGQGPLAHMPNAS 155

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 22/134 (16%), Positives = 45/134 (33%), Gaps = 1/134 (0%)

Query: 361 EIPQSLSKCSSLQGLFLSNNSLSGKIPR-WLGNLTVLRHIIMPKNHIEGPIPLEFCQLRI 419
           +    L    +L  L++ N      +    L  L  LR++ + K+ +    P  F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 420 LQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN 479
           L  L++S N +          + ++++ LS N LH               +  +    L 
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQ 141

Query: 480 GNIPDRVDGLSQLS 493
            +    +  +   S
Sbjct: 142 CHGQGPLAHMPNAS 155

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 30/149 (20%), Positives = 50/149 (33%), Gaps = 3/149 (2%)

Query: 288 SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTN 347
            IP           L L++N+L     + L      L  L L  N L G   +     ++
Sbjct: 22  EIPRDIPLH--TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 348 LIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIE 407
           +  LQL  N       +       L+ L L +N +S  +P    +L  L  + +  N   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 408 GPIPLEFCQLRILQILDISDNNISGSLPS 436
               L +     L+   ++        PS
Sbjct: 140 CNCHLAWF-AEWLRKKSLNGGAARCGAPS 167

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 37/179 (20%), Positives = 68/179 (37%), Gaps = 9/179 (5%)

Query: 302 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNF-NLTNLIWLQLEGNHFVG 360
           +D +   L  EIP  + +       L L++N L        F  L +L+ L+L+ N   G
Sbjct: 13  VDCTGRGLK-EIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG 68

Query: 361 EIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRIL 420
             P +    S +Q L L  N +     +    L  L+ + +  N I   +P  F  L  L
Sbjct: 69  IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128

Query: 421 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLN 479
             L+++ N  + +    +    + +  L+        + G       + I DL ++   
Sbjct: 129 TSLNLASNPFNCNCHLAWFAEWLRKKSLNGG----AARCGAPSKVRDVQIKDLPHSEFK 183

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 27/177 (15%), Positives = 58/177 (32%), Gaps = 6/177 (3%)

Query: 367 SKCS-SLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQL-RILQILD 424
           + C      +  +   L  +IPR +        +++  N +              L  L+
Sbjct: 4   AMCHCEGTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLE 60

Query: 425 ISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPD 484
           +  N ++G  P+ ++     Q          ++    F     L  L+L  N ++  +P 
Sbjct: 61  LKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG 120

Query: 485 RVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE 541
             + L+ L+ L LA N       +        +   L+        PS   +  + +
Sbjct: 121 SFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRK-KSLNGGAARCGAPSKVRDVQIKD 176

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (98), Expect = 3e-05
 Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 7/125 (5%)

Query: 375 LFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSL 434
           L L++  L+  +   L  L ++ H+ +  N +    P     LR L++L  SDN +  ++
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALE-NV 58

Query: 435 PSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHL---NGNIPDRVDGLSQ 491
               +   ++++ L  N L          +C  L++L+L  N L    G      + L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 492 LSYLI 496
           +S ++
Sbjct: 119 VSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (98), Expect = 3e-05
 Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 13/127 (10%)

Query: 277 VFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG 336
           V +++   L  ++      +  +  LDLS+N+L    P   A+ C+ +       ++   
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ----ASDNAL 55

Query: 337 HMFSRNFNLTNLIWLQLEGNHFVG-EIPQSLSKCSSLQGLFLSNNSLSG------KIPRW 389
                  NL  L  L L  N        Q L  C  L  L L  NSL        ++   
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

Query: 390 LGNLTVL 396
           L +++ +
Sbjct: 116 LPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 9e-05
 Identities = 30/155 (19%), Positives = 50/155 (32%), Gaps = 38/155 (24%)

Query: 494 YLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFE 553
            L LAH +L   V   L +L  +  LDLS+N L    P+      L     + ++L+  +
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 554 TSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQ-IG 612
               +    +                                L L  NRL      Q + 
Sbjct: 60  GVANLPRLQE--------------------------------LLLCNNRLQQSAAIQPLV 87

Query: 613 NLTKIQTLNLSHNNLAGP---IPSTFSNLRNIESL 644
           +  ++  LNL  N+L             L ++ S+
Sbjct: 88  SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 6/109 (5%)

Query: 421 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG 480
           ++L ++  +++  L      + +  + LS N L              L +L  S N L  
Sbjct: 1   RVLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRAL--PPALAALRCLEVLQASDNALEN 57

Query: 481 NIPDRVDGLSQLSYLILAHNNLEGEVPIQ-LCRLNQLQLLDLSNNNLHG 528
                     Q   L+L +N L+    IQ L    +L LL+L  N+L  
Sbjct: 58  VDGVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 26/117 (22%)

Query: 596 LDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNI-------------- 641
           L L+   L   +   +  L  +  L+LSHN L    P+  + LR +              
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD 59

Query: 642 --------ESLDLSYNKL-SWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATF 689
                   + L L  N+L        LV    L + ++  N+L  +   +       
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 25/124 (20%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 57  SVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSS 116
            +++   T+   L  L+ +  L ++ N LR         + +LR L+V         +  
Sbjct: 4   HLAHKDLTVLCHLEQLLLVTHLDLSHNRLR----ALPPALAALRCLEVLQASDNALENVD 59

Query: 117 PLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAENNEINAEIIESHSLTTPNFQL 176
            + +L  +++L+L +N  Q   +++PL +  RL + + + N +  E      L      +
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 119

Query: 177 QSLL 180
            S+L
Sbjct: 120 SSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 6/110 (5%)

Query: 227 RQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALD 286
           R L L +  L       +     +  LD+S N  +   P     + +   +  +  +   
Sbjct: 1   RVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNA 54

Query: 287 GSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEG 336
                   N+  LQ L L NN+L         + C  L  L L  N+L  
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 35/188 (18%), Positives = 69/188 (36%), Gaps = 19/188 (10%)

Query: 468 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH 527
            M   L   ++   +      L Q++ L      ++    ++   LN L  ++ SNN L 
Sbjct: 20  KMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVE--YLNNLTQINFSNNQLT 75

Query: 528 GHIP-----------SCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDF 576
              P              +         N ++L         +  +D       L   + 
Sbjct: 76  DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 135

Query: 577 TTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFS 636
           ++ +I+        + L  L+ S N++    P  + NLT ++ L++S N ++    S  +
Sbjct: 136 SSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLA 191

Query: 637 NLRNIESL 644
            L N+ESL
Sbjct: 192 KLTNLESL 199

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 18/121 (14%), Positives = 41/121 (33%), Gaps = 7/121 (5%)

Query: 322 VSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNS 381
            S ++L L     +  + +        + L    +     +         L  L LSNN 
Sbjct: 22  GSQQALDLKGLRSDPDLVA----QNIDVVLNR-RSSMAATLRIIEENIPELLSLNLSNNR 76

Query: 382 LSGK--IPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYD 439
           L     +   +     L+ + +  N ++    L+  +   L+ L +  N++S +      
Sbjct: 77  LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136

Query: 440 F 440
           +
Sbjct: 137 Y 137

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 26/210 (12%), Positives = 49/210 (23%), Gaps = 3/210 (1%)

Query: 467 TLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL 526
             + L      L         G   L  + ++ N++   +   +                
Sbjct: 30  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 89

Query: 527 HGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQ 586
           +    +      L        S          +  +    K  +    +    +I     
Sbjct: 90  NLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 148

Query: 587 GRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDL 646
             +      L L+ N +              +     +NNL       F        LD+
Sbjct: 149 VGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 208

Query: 647 SYNKLSWKIPYQLVELNTLAVFSVAYNNLS 676
           S  ++     Y L  L  L   S    NL 
Sbjct: 209 SRTRIHSLPSYGLENLKKLRARST--YNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 28/212 (13%), Positives = 62/212 (29%), Gaps = 4/212 (1%)

Query: 97  TSLRILDVSSNQLIGSISSSPLIHLTSIEDLILSDNHFQIPISLEPLFNHSRLKIFDAEN 156
            +   L     + +  I          +E + +S N     I  +   N  +L     E 
Sbjct: 29  RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87

Query: 157 NEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFP 216
                 I        PN Q   +  S+     +     +++   +      +I ++    
Sbjct: 88  ANNLLYINPEAFQNLPNLQYLLI--SNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 145

Query: 217 NWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLT 276
           N  +  + +   L L  + +        +  +   L     NN    +P ++    S   
Sbjct: 146 NSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD-NNNLEELPNDVFHGASGPV 204

Query: 277 VFNISMNALDGSIPSSFGNMNFLQFLDLSNNQ 308
           + +IS   +         N+  L+     N +
Sbjct: 205 ILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 25/230 (10%), Positives = 58/230 (25%), Gaps = 4/230 (1%)

Query: 421 QILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNG 480
           ++    ++ ++  +PS        ++      L   +++G F     L  +++S N +  
Sbjct: 11  RVFLCQESKVT-EIPSDL-PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLE 67

Query: 481 NIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLH 540
            I   V       + I                 N   L  L  +N               
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127

Query: 541 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSC 600
           ++            +      + +  +  IL   +       +        L        
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVIL-WLNKNGIQEIHNCAFNGTQLDELNLSDN 186

Query: 601 NRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNK 650
           N L           +    L++S   +         NL+ + +      K
Sbjct: 187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 34/219 (15%), Positives = 68/219 (31%), Gaps = 7/219 (3%)

Query: 288 SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLA-MGCVSLRSLALSNNNLEGHMFSRNFNLT 346
            IPS          L     +L        +  G +    ++ ++          +    
Sbjct: 22  EIPSDLPRN--AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79

Query: 347 NLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPR--WLGNLTVLRHIIMPKN 404
                  + N+ +   P++     +LQ L +SN  +              VL  I    N
Sbjct: 80  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139

Query: 405 HIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFN 464
                            IL ++ N I       ++   +++++LS N    +L    F  
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199

Query: 465 CLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLE 503
               +ILD+S   ++      ++ L +L        NL+
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK 236

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 31/165 (18%), Positives = 58/165 (35%), Gaps = 10/165 (6%)

Query: 345 LTNLIWLQLEGNHFVGEIP------QSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRH 398
             +++  + E     G IP       +LS   + + L LS N++  KI   L  +  LR 
Sbjct: 17  RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRI 74

Query: 399 IIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLK 458
           + + +N I+    L+               N   SL      V +  +++S N +    +
Sbjct: 75  LSLGRNLIKKIENLDAVA--DTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGE 132

Query: 459 EGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLE 503
                    L  L L+ N L  +  +          ++    NL+
Sbjct: 133 IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	788
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.78
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.75
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.47
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.44
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.4
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.38
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.36
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.24
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.15
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.25
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.08
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.66
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.55
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.11
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.96

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=2.5e-28  Score=250.65  Aligned_cols=258  Identities=33%  Similarity=0.553  Sum_probs=218.1

Q ss_pred             CCcEEEcccCcCCC--CCCccccCCCCccEEEccC-CeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEE
Q 003893          371 SLQGLFLSNNSLSG--KIPRWLGNLTVLRHIIMPK-NHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVH  447 (788)
Q Consensus       371 ~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~  447 (788)
                      .++.|+++++.+.+  .+|..+.++++|++|++++ |.+.+.+|..+.++++|++|++++|++.+.              
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~--------------  116 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA--------------  116 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE--------------
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccc--------------
Confidence            56777777777765  3566777777777777775 677777777778888888888887776532              


Q ss_pred             ccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCC-CEEEccCCcC
Q 003893          448 LSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQL-QLLDLSNNNL  526 (788)
Q Consensus       448 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l  526 (788)
                               .+ ..+..++.|+.+++++|.+.+.+|..+..++.++.+++++|.+.+.+|..+..+..+ +.+++++|++
T Consensus       117 ---------~~-~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         117 ---------IP-DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ---------CC-GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             ---------cc-ccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccc
Confidence                     22 267778889999999999888889999999999999999999998889888888776 8899999999


Q ss_pred             CccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCccccc
Q 003893          527 HGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGH  606 (788)
Q Consensus       527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  606 (788)
                      ++..|..+....                                                      ...++++++...+.
T Consensus       187 ~~~~~~~~~~l~------------------------------------------------------~~~l~l~~~~~~~~  212 (313)
T d1ogqa_         187 TGKIPPTFANLN------------------------------------------------------LAFVDLSRNMLEGD  212 (313)
T ss_dssp             EEECCGGGGGCC------------------------------------------------------CSEEECCSSEEEEC
T ss_pred             cccccccccccc------------------------------------------------------cccccccccccccc
Confidence            988877665543                                                      45799999999999


Q ss_pred             CcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCcccc
Q 003893          607 IPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQF  686 (788)
Q Consensus       607 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~  686 (788)
                      +|..+..+++++.+++++|.+.+.+| .+..+++|+.|++++|++++.+|..+.++++|++|++++|+++|.+|+. .++
T Consensus       213 ~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~-~~L  290 (313)
T d1ogqa_         213 ASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL  290 (313)
T ss_dssp             CGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred             cccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCc-ccC
Confidence            99999999999999999999987654 6888999999999999999999999999999999999999999999974 789


Q ss_pred             CCCCcCCcCCCCCCCCCCCCCC
Q 003893          687 ATFNESSYEGNPFLCGPPLPIC  708 (788)
Q Consensus       687 ~~l~~~~~~~Np~~C~~~~~~~  708 (788)
                      ++++.+++.||+..|+.|++.|
T Consensus       291 ~~L~~l~l~~N~~l~g~plp~c  312 (313)
T d1ogqa_         291 QRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             GGSCGGGTCSSSEEESTTSSCC
T ss_pred             CCCCHHHhCCCccccCCCCCCC
Confidence            9999999999999999877644

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.9e-25  Score=236.87  Aligned_cols=342  Identities=23%  Similarity=0.276  Sum_probs=195.5

Q ss_pred             cCCCCCEEEccCCcccCcCccCccCCCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCE
Q 003893          222 NNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQF  301 (788)
Q Consensus       222 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  301 (788)
                      .+.+|++|+++++.++..  ..+..+++|++|++++|+++ .++. +. .+++|++|++++|++.+. + .++.+++|+.
T Consensus        42 ~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~~-l~-~L~~L~~L~L~~n~i~~i-~-~l~~l~~L~~  114 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP-LK-NLTKLVDILMNNNQIADI-T-PLANLTNLTG  114 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCCC-G-GGTTCTTCCE
T ss_pred             HhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCcc-cc-CCcccccccccccccccc-c-cccccccccc
Confidence            445666666666665543  23455666666666666665 3332 22 256666666666666532 2 2566666666


Q ss_pred             EEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCc
Q 003893          302 LDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNS  381 (788)
Q Consensus       302 L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  381 (788)
                      |+++++.++ .++...  ....+.......+.+.....................     .....+...+.........+.
T Consensus       115 L~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  186 (384)
T d2omza2         115 LTLFNNQIT-DIDPLK--NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV-----TDLKPLANLTTLERLDISSNK  186 (384)
T ss_dssp             EECCSSCCC-CCGGGT--TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC-----CCCGGGTTCTTCCEEECCSSC
T ss_pred             ccccccccc-cccccc--cccccccccccccccccccccccccccccccccccc-----chhhhhccccccccccccccc
Confidence            666666665 333222  234555555555554433222111111111111110     111122233333333333333


Q ss_pred             CCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCccc
Q 003893          382 LSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGT  461 (788)
Q Consensus       382 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  461 (788)
                      ..  .......+++++.+.+++|.+.+..+  +..+++|+.|++++|.++                       + ++  .
T Consensus       187 ~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~-----------------------~-~~--~  236 (384)
T d2omza2         187 VS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-----------------------D-IG--T  236 (384)
T ss_dssp             CC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-----------------------C-CG--G
T ss_pred             cc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCC-----------------------C-cc--h
Confidence            22  22233444555555555555543332  233445555555555443                       1 22  4


Q ss_pred             ccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhh
Q 003893          462 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE  541 (788)
Q Consensus       462 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  541 (788)
                      +..+++|+.|++++|.+++..  .+..+++|++|++++|++++..  .+..++.++.+++++|.+.+..  .+...    
T Consensus       237 l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~~--~~~~~----  306 (384)
T d2omza2         237 LASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS--PISNL----  306 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCG--GGGGC----
T ss_pred             hhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCC--cccccccccccccccccccccc--ccchh----
Confidence            666777888888888877543  3667788888888888776432  3667778888888888776432  12221    


Q ss_pred             hccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEe
Q 003893          542 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLN  621 (788)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  621 (788)
                                                                       ++++.|++++|++++..  .+..+++|++|+
T Consensus       307 -------------------------------------------------~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~  335 (384)
T d2omza2         307 -------------------------------------------------KNLTYLTLYFNNISDIS--PVSSLTKLQRLF  335 (384)
T ss_dssp             -------------------------------------------------TTCSEEECCSSCCSCCG--GGGGCTTCCEEE
T ss_pred             -------------------------------------------------cccCeEECCCCCCCCCc--ccccCCCCCEEE
Confidence                                                             26788888888887553  377888888888


Q ss_pred             CCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccC
Q 003893          622 LSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYN  673 (788)
Q Consensus       622 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N  673 (788)
                      +++|++++ ++ .++++++|++|++++|++++..|  +.++++|+.|++++|
T Consensus       336 L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         336 FANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            88888874 33 57888888888888888886544  778888888888887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=6.7e-25  Score=232.65  Aligned_cols=342  Identities=25%  Similarity=0.255  Sum_probs=221.0

Q ss_pred             CCCCcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCc
Q 003893          246 SHKQLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLR  325 (788)
Q Consensus       246 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~  325 (788)
                      .+.+|++|++++++++ .+ +++. .+++|++|++++|++++. + .++++++|++|++++|.+. .++.  +.++++|+
T Consensus        42 ~l~~l~~L~l~~~~I~-~l-~gl~-~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~-~i~~--l~~l~~L~  113 (384)
T d2omza2          42 DLDQVTTLQADRLGIK-SI-DGVE-YLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIA-DITP--LANLTNLT  113 (384)
T ss_dssp             HHTTCCEEECCSSCCC-CC-TTGG-GCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCGG--GTTCTTCC
T ss_pred             HhCCCCEEECCCCCCC-Cc-cccc-cCCCCCEEeCcCCcCCCC-c-cccCCcccccccccccccc-cccc--cccccccc
Confidence            3456667777776665 33 2232 356677777777766643 2 2666666777777766666 3433  23466666


Q ss_pred             EEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCe
Q 003893          326 SLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNH  405 (788)
Q Consensus       326 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  405 (788)
                      .|+++++.+++....  .....+.......+.+......................     ....+...+.........+.
T Consensus       114 ~L~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  186 (384)
T d2omza2         114 GLTLFNNQITDIDPL--KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT-----DLKPLANLTTLERLDISSNK  186 (384)
T ss_dssp             EEECCSSCCCCCGGG--TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC-----CCGGGTTCTTCCEEECCSSC
T ss_pred             ccccccccccccccc--cccccccccccccccccccccccccccccccccccccc-----hhhhhccccccccccccccc
Confidence            666666665543322  23344455555544443222211111111111111111     11122233333333333333


Q ss_pred             eccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCcc
Q 003893          406 IEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDR  485 (788)
Q Consensus       406 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~  485 (788)
                      ..  ....+..+++++.+++++|.++                       +..   .+..+++|++|++++|.+++.  ..
T Consensus       187 ~~--~~~~~~~l~~~~~l~l~~n~i~-----------------------~~~---~~~~~~~L~~L~l~~n~l~~~--~~  236 (384)
T d2omza2         187 VS--DISVLAKLTNLESLIATNNQIS-----------------------DIT---PLGILTNLDELSLNGNQLKDI--GT  236 (384)
T ss_dssp             CC--CCGGGGGCTTCSEEECCSSCCC-----------------------CCG---GGGGCTTCCEEECCSSCCCCC--GG
T ss_pred             cc--cccccccccccceeeccCCccC-----------------------CCC---cccccCCCCEEECCCCCCCCc--ch
Confidence            22  2233445555555555555443                       222   245677899999999999843  46


Q ss_pred             ccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccC
Q 003893          486 VDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVD  565 (788)
Q Consensus       486 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  565 (788)
                      +..+++|+.|++++|.+++..  .+..+++|++|++++|++++..+  +...                            
T Consensus       237 l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~--~~~~----------------------------  284 (384)
T d2omza2         237 LASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISP--LAGL----------------------------  284 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGG--GTTC----------------------------
T ss_pred             hhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCCc--cccc----------------------------
Confidence            788999999999999998543  37889999999999999875543  2222                            


Q ss_pred             cccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeee
Q 003893          566 PKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLD  645 (788)
Q Consensus       566 ~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  645 (788)
                                               +.++.+++++|.+++.  ..+..+++++.|++++|++++..  .+..+++|++|+
T Consensus       285 -------------------------~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~  335 (384)
T d2omza2         285 -------------------------TALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLF  335 (384)
T ss_dssp             -------------------------TTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEE
T ss_pred             -------------------------cccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEE
Confidence                                     2688999999999853  45888999999999999999764  388899999999


Q ss_pred             CCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCC
Q 003893          646 LSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGN  697 (788)
Q Consensus       646 Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~N  697 (788)
                      +++|+++. ++ .+..+++|++|++++|++++.+|  +..+++++.+++++|
T Consensus       336 L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         336 FANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            99999984 44 68999999999999999998765  678889999999887

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.93  E-value=1.3e-26  Score=237.79  Aligned_cols=248  Identities=29%  Similarity=0.452  Sum_probs=147.0

Q ss_pred             cCceeccCccCcc--cCCccCCCCCCCcEEEccc-CcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEe
Q 003893          348 LIWLQLEGNHFVG--EIPQSLSKCSSLQGLFLSN-NSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILD  424 (788)
Q Consensus       348 L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  424 (788)
                      ++.|+++++.+.+  .+|..+.++++|++|++++ |.+.+.+|..+.++++|++|++++|++.+..+..+..++.|+.++
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~  131 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccc
Confidence            4445555554443  2455555666666666654 455555566666666666666666666655555566666666666


Q ss_pred             ccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCC-cEEEccCccCc
Q 003893          425 ISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQL-SYLILAHNNLE  503 (788)
Q Consensus       425 l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L-~~L~L~~n~l~  503 (788)
                      +++|.+.+..                       |. .+.+++.++++++++|.+.+.+|..+..+.++ +.+++++|+++
T Consensus       132 l~~N~~~~~~-----------------------p~-~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~  187 (313)
T d1ogqa_         132 FSYNALSGTL-----------------------PP-SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             CCSSEEESCC-----------------------CG-GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred             cccccccccC-----------------------ch-hhccCcccceeecccccccccccccccccccccccccccccccc
Confidence            6666554222                       22 44455555555555555555555555554443 55566666665


Q ss_pred             ccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCcee
Q 003893          504 GEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITY  583 (788)
Q Consensus       504 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  583 (788)
                      +..+..+..+.. ..++++++...+.+|..+....                                             
T Consensus       188 ~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~---------------------------------------------  221 (313)
T d1ogqa_         188 GKIPPTFANLNL-AFVDLSRNMLEGDASVLFGSDK---------------------------------------------  221 (313)
T ss_dssp             EECCGGGGGCCC-SEEECCSSEEEECCGGGCCTTS---------------------------------------------
T ss_pred             cccccccccccc-cccccccccccccccccccccc---------------------------------------------
Confidence            555555554433 3566666666555554443333                                             


Q ss_pred             cccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCC
Q 003893          584 TYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELN  663 (788)
Q Consensus       584 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~  663 (788)
                              +++.+++++|.+.+.++ .+..+++|+.|+|++|++++.+|+.|+++++|++|+|++|++++.+|+ +.+++
T Consensus       222 --------~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~  291 (313)
T d1ogqa_         222 --------NTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQ  291 (313)
T ss_dssp             --------CCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGG
T ss_pred             --------ccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCC
Confidence                    56666666666664433 466667777777777777777777777777777777777777776663 45666


Q ss_pred             CCcEEecccCcC
Q 003893          664 TLAVFSVAYNNL  675 (788)
Q Consensus       664 ~L~~L~l~~N~l  675 (788)
                      +|+.+++++|+.
T Consensus       292 ~L~~l~l~~N~~  303 (313)
T d1ogqa_         292 RFDVSAYANNKC  303 (313)
T ss_dssp             GSCGGGTCSSSE
T ss_pred             CCCHHHhCCCcc
Confidence            777777777763

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=3.9e-24  Score=218.35  Aligned_cols=268  Identities=24%  Similarity=0.298  Sum_probs=174.6

Q ss_pred             CCCEEEccCCcCCCccchHHhhCCCCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEc
Q 003893          298 FLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFL  377 (788)
Q Consensus       298 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  377 (788)
                      .++.++.++..++ .+|..++   +++++|++++|+++...+..|.++++|++|++++|.+....+..|.+++.|++|++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCC-ccCCCCC---CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            4566677777776 6676543   46777777777777666666777778888888888877666777888888888888


Q ss_pred             ccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCccccccc
Q 003893          378 SNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQL  457 (788)
Q Consensus       378 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  457 (788)
                      ++|+++. +|..  ..+.++.|.+.+|.+.+..+..+.....+..++...+.....                      ..
T Consensus        87 ~~n~l~~-l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~----------------------~~  141 (305)
T d1xkua_          87 SKNQLKE-LPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS----------------------GI  141 (305)
T ss_dssp             CSSCCSB-CCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----------------------GB
T ss_pred             cCCccCc-Cccc--hhhhhhhhhccccchhhhhhhhhhcccccccccccccccccc----------------------CC
Confidence            8887774 3332  235677888888888777666777777777777777654311                      11


Q ss_pred             CcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCccccccc
Q 003893          458 KEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNT  537 (788)
Q Consensus       458 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  537 (788)
                      ....+..+++|+.+++++|.+.. ++..  .+++|++|++++|......+..+.+++.+++|++++|.+.+..+..+...
T Consensus       142 ~~~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l  218 (305)
T d1xkua_         142 ENGAFQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT  218 (305)
T ss_dssp             CTTGGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred             CccccccccccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccc
Confidence            12256777788888888887763 3332  24677777777777776667777777777777777777766555554443


Q ss_pred             chhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccC
Q 003893          538 TLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKI  617 (788)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  617 (788)
                      +                                                     +|++|+|++|+++ .+|.+|..+++|
T Consensus       219 ~-----------------------------------------------------~L~~L~L~~N~L~-~lp~~l~~l~~L  244 (305)
T d1xkua_         219 P-----------------------------------------------------HLRELHLNNNKLV-KVPGGLADHKYI  244 (305)
T ss_dssp             T-----------------------------------------------------TCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred             c-----------------------------------------------------cceeeeccccccc-ccccccccccCC
Confidence            3                                                     5666666666665 335556666666


Q ss_pred             CeEeCCCCCCCCCCCcccC------CCCCCCeeeCCCccc
Q 003893          618 QTLNLSHNNLAGPIPSTFS------NLRNIESLDLSYNKL  651 (788)
Q Consensus       618 ~~L~Ls~N~l~~~~~~~~~------~l~~L~~L~Ls~N~l  651 (788)
                      ++|+|++|+|+.+....|.      .+++|+.|+|++|++
T Consensus       245 ~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         245 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             CEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            6666666666644333332      234455555555544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=2.6e-23  Score=212.13  Aligned_cols=252  Identities=22%  Similarity=0.238  Sum_probs=152.1

Q ss_pred             CcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEE
Q 003893          249 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLA  328 (788)
Q Consensus       249 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~  328 (788)
                      ..+.++-++.+++ .+|..+.   +++++|++++|+++...+.+|.++++|++|++++|.+. .++...+.++++|++|+
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~   85 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLY   85 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEE
T ss_pred             cCCEEEecCCCCC-ccCCCCC---CCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCEec
Confidence            3455666666665 5665442   46666666666666444445666666666666666666 44444444566666666


Q ss_pred             ccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeecc
Q 003893          329 LSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEG  408 (788)
Q Consensus       329 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~  408 (788)
                      +++|+++.....   ..+.++.|++.+|.+....+..+.....+..++...+...                      ...
T Consensus        86 l~~n~l~~l~~~---~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~----------------------~~~  140 (305)
T d1xkua_          86 LSKNQLKELPEK---MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK----------------------SSG  140 (305)
T ss_dssp             CCSSCCSBCCSS---CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC----------------------GGG
T ss_pred             ccCCccCcCccc---hhhhhhhhhccccchhhhhhhhhhcccccccccccccccc----------------------ccC
Confidence            666665543221   1234555555555554433333444444444444443222                      111


Q ss_pred             CchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccC
Q 003893          409 PIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDG  488 (788)
Q Consensus       409 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  488 (788)
                      ..+..+..+++|+.+++++|.+......  .+++++.|++.+|...+..+. .|.+++.+++|++++|.+.+..+.++.+
T Consensus       141 ~~~~~~~~l~~L~~l~l~~n~l~~l~~~--~~~~L~~L~l~~n~~~~~~~~-~~~~~~~l~~L~~s~n~l~~~~~~~~~~  217 (305)
T d1xkua_         141 IENGAFQGMKKLSYIRIADTNITTIPQG--LPPSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISAVDNGSLAN  217 (305)
T ss_dssp             BCTTGGGGCTTCCEEECCSSCCCSCCSS--CCTTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred             CCccccccccccCccccccCCccccCcc--cCCccCEEECCCCcCCCCChh-Hhhccccccccccccccccccccccccc
Confidence            2233455566666666666665432211  145566666666655544443 7778888888888888888777778888


Q ss_pred             CcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccc
Q 003893          489 LSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCF  534 (788)
Q Consensus       489 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  534 (788)
                      +++|++|+|++|+++ .+|.++..+++|++|++++|+|+.+....|
T Consensus       218 l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f  262 (305)
T d1xkua_         218 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF  262 (305)
T ss_dssp             STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             cccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhc
Confidence            888888888888887 456678888888888888888876554444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.5e-24  Score=213.06  Aligned_cols=209  Identities=24%  Similarity=0.291  Sum_probs=159.6

Q ss_pred             ccEEEccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEcc-CccCcccCcccccCCCCCCEEEc
Q 003893          443 IEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILA-HNNLEGEVPIQLCRLNQLQLLDL  521 (788)
Q Consensus       443 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L  521 (788)
                      +++|++++|.+. .++...|.+++.|++|++++|.+....+..+..++.++.+... .+.++...+..|.++++|++|++
T Consensus        34 ~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          34 SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             CSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEECcCCcCC-CCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            334444444443 4454477788888888888888877777777777788887664 44566666777888888888888


Q ss_pred             cCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCC
Q 003893          522 SNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCN  601 (788)
Q Consensus       522 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n  601 (788)
                      ++|.+....+..+....                                                     .|+.+++++|
T Consensus       113 ~~n~~~~~~~~~~~~~~-----------------------------------------------------~L~~l~l~~N  139 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLA-----------------------------------------------------ALQYLYLQDN  139 (284)
T ss_dssp             TTSCCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCSS
T ss_pred             CCcccccccccccchhc-----------------------------------------------------ccchhhhccc
Confidence            88887655554443333                                                     6888888888


Q ss_pred             cccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCC
Q 003893          602 RLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPE  681 (788)
Q Consensus       602 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  681 (788)
                      .+++..+..|..+++|+.|++++|++++..+..|.++++|+++++++|++++..|..|..+++|++|++++|.+.+..+.
T Consensus       140 ~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~  219 (284)
T d1ozna_         140 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE  219 (284)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred             cccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccc
Confidence            88877777788888888888888888877778888888888888888888888888888888888888888888887777


Q ss_pred             CccccCCCCcCCcCCCCCCCCCCC
Q 003893          682 RAAQFATFNESSYEGNPFLCGPPL  705 (788)
Q Consensus       682 ~~~~~~~l~~~~~~~Np~~C~~~~  705 (788)
                      .+..+.+++.+++++|||.|+|+.
T Consensus       220 ~~~~~~~L~~L~l~~N~l~C~C~~  243 (284)
T d1ozna_         220 ALAPLRALQYLRLNDNPWVCDCRA  243 (284)
T ss_dssp             HHTTCTTCCEEECCSSCEECSGGG
T ss_pred             ccccccccCEEEecCCCCCCCccc
Confidence            777888888888888888888874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.5e-23  Score=209.53  Aligned_cols=75  Identities=28%  Similarity=0.279  Sum_probs=37.7

Q ss_pred             cccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCccccc
Q 003893          461 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFD  535 (788)
Q Consensus       461 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  535 (788)
                      .|.++++|++|++++|.+....+..+...++|+.+++++|.+++..+..|..+++|++|++++|.+++..+..|.
T Consensus       100 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~  174 (284)
T d1ozna_         100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR  174 (284)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             hhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhc
Confidence            455555555555555555444444444455555555555555544444444555555555555555444444443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.3e-23  Score=206.07  Aligned_cols=183  Identities=27%  Similarity=0.240  Sum_probs=142.4

Q ss_pred             ccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccC
Q 003893          466 LTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNN  545 (788)
Q Consensus       466 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~  545 (788)
                      +++++|+|++|++++..+..|.++++|++|+|++|+++. ++ .+..+++|++|++++|++++.. ..+..+.       
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~-------  100 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQSLP-LLGQTLP-------  100 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCSSCC-CCTTTCT-------
T ss_pred             cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccccccccccccc-ccccccc-------
Confidence            467788888888876666677778888888888888773 33 3466788888888888876442 2333222       


Q ss_pred             CCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCC
Q 003893          546 GSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN  625 (788)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  625 (788)
                                                                    .|+.|++++|.+.+..+..+..+.+++.|++++|
T Consensus       101 ----------------------------------------------~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n  134 (266)
T d1p9ag_         101 ----------------------------------------------ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN  134 (266)
T ss_dssp             ----------------------------------------------TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred             ----------------------------------------------ccccccccccccceeecccccccccccccccccc
Confidence                                                          6788888888888777777888888888888888


Q ss_pred             CCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCCCCCC
Q 003893          626 NLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL  705 (788)
Q Consensus       626 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~  705 (788)
                      .++...+..+..+++|+.+++++|++++..+..|..+++|++|++++|+|+ .+|+.+..+..++.+++.||||.|+|..
T Consensus       135 ~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~~  213 (266)
T d1p9ag_         135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (266)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             ccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcch
Confidence            888777778888888888888888888777778888888888888888888 5676677788888888999999999874

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.2e-21  Score=192.74  Aligned_cols=161  Identities=26%  Similarity=0.253  Sum_probs=109.6

Q ss_pred             cccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchh
Q 003893          461 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLH  540 (788)
Q Consensus       461 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~  540 (788)
                      .|.++++|++|++++|+++.. + .+..+++|++|++++|+++ ..+..+..+++|+.|++++|.+.+..+..+....  
T Consensus        50 ~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~--  124 (266)
T d1p9ag_          50 TLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG--  124 (266)
T ss_dssp             GGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT--
T ss_pred             Hhhcccccccccccccccccc-c-ccccccccccccccccccc-ccccccccccccccccccccccceeecccccccc--
Confidence            445555555555555555422 1 2344555666666666555 2344555666666666666666554444443332  


Q ss_pred             hhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeE
Q 003893          541 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTL  620 (788)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  620 (788)
                                                                         +++.|++++|.++...+..+..+++|+.|
T Consensus       125 ---------------------------------------------------~l~~L~l~~n~l~~l~~~~~~~l~~l~~l  153 (266)
T d1p9ag_         125 ---------------------------------------------------ELQELYLKGNELKTLPPGLLTPTPKLEKL  153 (266)
T ss_dssp             ---------------------------------------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             ---------------------------------------------------ccccccccccccceeccccccccccchhc
Confidence                                                               56777777777776667777788888888


Q ss_pred             eCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCccc
Q 003893          621 NLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGK  678 (788)
Q Consensus       621 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~  678 (788)
                      ++++|++++..++.|..+++|++|+|++|+|+ .+|..+..+++|+.|++++|++.|.
T Consensus       154 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             ccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCC
Confidence            88888888877788888888888888888888 6777777888888888888888764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=8.6e-17  Score=167.18  Aligned_cols=58  Identities=28%  Similarity=0.258  Sum_probs=29.6

Q ss_pred             ccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCC
Q 003893          462 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLH  527 (788)
Q Consensus       462 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  527 (788)
                      +..++.|+.+++++|.... .+   ....++..+.+.++.+... +.   ..+.+...++..+.+.
T Consensus       200 ~~~l~~L~~l~l~~n~~~~-~~---~~~~~l~~~~~~~~~~~~~-~~---~~~~l~~~~~~~~~~~  257 (353)
T d1jl5a_         200 LQNLPFLTTIYADNNLLKT-LP---DLPPSLEALNVRDNYLTDL-PE---LPQSLTFLDVSENIFS  257 (353)
T ss_dssp             CTTCTTCCEEECCSSCCSS-CC---SCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS
T ss_pred             ccccccccccccccccccc-cc---ccccccccccccccccccc-cc---cccccccccccccccc
Confidence            3445666666666665542 22   2234566666666665421 11   2344555665555443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.78  E-value=5.4e-17  Score=168.77  Aligned_cols=73  Identities=29%  Similarity=0.373  Sum_probs=40.9

Q ss_pred             CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecc
Q 003893          592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  671 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  671 (788)
                      .....++..+.+.+.    ...+++|++|+|++|+++. +|..   +++|++|++++|+|+ .+|..   +++|+.|+++
T Consensus       265 ~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~  332 (353)
T d1jl5a_         265 NLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVE  332 (353)
T ss_dssp             TCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECC
T ss_pred             hhcccccccCccccc----cccCCCCCEEECCCCccCc-cccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECc
Confidence            444555555554422    1234566667777666663 3432   456666777777666 34432   3456667777


Q ss_pred             cCcCc
Q 003893          672 YNNLS  676 (788)
Q Consensus       672 ~N~l~  676 (788)
                      +|+++
T Consensus       333 ~N~L~  337 (353)
T d1jl5a_         333 YNPLR  337 (353)
T ss_dssp             SSCCS
T ss_pred             CCcCC
Confidence            77665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=2.8e-18  Score=160.63  Aligned_cols=178  Identities=22%  Similarity=0.298  Sum_probs=143.2

Q ss_pred             ccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcc-cCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCC
Q 003893          468 LMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEG-EVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNG  546 (788)
Q Consensus       468 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~  546 (788)
                      .++++.++++++ .+|..+.  +++++|+|++|+|++ ..+..|.++++|++|++++|.+.+..+..|....        
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~--------   78 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS--------   78 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT--------
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccc--------
Confidence            457888999888 5665542  689999999999975 4466788899999999999999988887776655        


Q ss_pred             CCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCC
Q 003893          547 SSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNN  626 (788)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  626 (788)
                                                                   +|++|+|++|++++..+..|.++++|++|+|++|+
T Consensus        79 ---------------------------------------------~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~  113 (192)
T d1w8aa_          79 ---------------------------------------------HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             ---------------------------------------------TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred             ---------------------------------------------ccceeeeccccccccCHHHHhCCCcccccccCCcc
Confidence                                                         89999999999998889999999999999999999


Q ss_pred             CCCCCCcccCCCCCCCeeeCCCcccCccCch-hhhcCCCCcEEecccCcCcccCCCCccccCCCCcCCcCCCCCCCCCCC
Q 003893          627 LAGPIPSTFSNLRNIESLDLSYNKLSWKIPY-QLVELNTLAVFSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL  705 (788)
Q Consensus       627 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~  705 (788)
                      |+++.++.|..+++|++|+|++|++...... ++.  ..++.+.+..|.+++..|..   +..+.-.++..|.+.|.++.
T Consensus       114 l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~~p~~---l~~~~l~~L~~n~l~C~~~~  188 (192)
T d1w8aa_         114 ISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSSEN  188 (192)
T ss_dssp             CCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSSTT---TTTSBGGGSCTTTCCCCCC-
T ss_pred             ccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeCCChh---hcCCEeeecCHhhCcCCCCC
Confidence            9998899999999999999999999754332 222  34566778888888877764   34455667888999997764


Q ss_pred             C
Q 003893          706 P  706 (788)
Q Consensus       706 ~  706 (788)
                      .
T Consensus       189 ~  189 (192)
T d1w8aa_         189 S  189 (192)
T ss_dssp             -
T ss_pred             C
Confidence            3

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=8e-20  Score=198.10  Aligned_cols=380  Identities=20%  Similarity=0.124  Sum_probs=180.2

Q ss_pred             CcCEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCC----CCCccccCCCCCCEEEccCCcCCCccchHHhh----C
Q 003893          249 QLRLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDG----SIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAM----G  320 (788)
Q Consensus       249 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~----~  320 (788)
                      +|++||++++++++..-..+...++++++|+|++|.++.    .+...+..+++|++|++++|.++......+..    .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            466777777776643323334446677777777776653    22334566777777777777765221112221    1


Q ss_pred             CCCCcEEEccccccCccc----cccccCCCccCceeccCccCcccCCcc----C-CCCCCCcEEEcccCcCCCCC----C
Q 003893          321 CVSLRSLALSNNNLEGHM----FSRNFNLTNLIWLQLEGNHFVGEIPQS----L-SKCSSLQGLFLSNNSLSGKI----P  387 (788)
Q Consensus       321 l~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~~~----~-~~l~~L~~L~l~~n~l~~~~----~  387 (788)
                      ..+|++|++++|.++...    +..+..+++|++|++++|.+.......    + ....................    .
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            245777777777765432    223445667777777777654321111    1 11112223333332221100    0


Q ss_pred             ccccCCCCccEEEccCCeeccCchh----hhh-cccCCcEEeccCCcCCCCCCC-----CCCCCcccEEEccCcccccc-
Q 003893          388 RWLGNLTVLRHIIMPKNHIEGPIPL----EFC-QLRILQILDISDNNISGSLPS-----CYDFVCIEQVHLSKNMLHGQ-  456 (788)
Q Consensus       388 ~~l~~l~~L~~L~l~~n~~~~~~~~----~~~-~l~~L~~L~l~~n~~~~~~~~-----~~~~~~L~~L~l~~n~~~~~-  456 (788)
                      ..+.....++.+.++++........    .+. .-.....+++..+.+......     ....+.++.+.+.+|..... 
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~  242 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  242 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence            1122334556666665544321111    111 112344555555543211100     00134445555555443211 


Q ss_pred             ---cCcccccccccccEEeCCCCccCCCC----CccccCCcCCcEEEccCccCcccCccc-----ccCCCCCCEEEccCC
Q 003893          457 ---LKEGTFFNCLTLMILDLSYNHLNGNI----PDRVDGLSQLSYLILAHNNLEGEVPIQ-----LCRLNQLQLLDLSNN  524 (788)
Q Consensus       457 ---~~~~~~~~~~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~L~L~~n  524 (788)
                         ...........++.+++++|.+....    ...+...+.++.+++++|.+.......     ......|+.+++++|
T Consensus       243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~  322 (460)
T d1z7xw1         243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  322 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc
Confidence               01112233455666666666554221    112334555666666666654221111     112345666666666


Q ss_pred             cCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCccc
Q 003893          525 NLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLI  604 (788)
Q Consensus       525 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  604 (788)
                      .++......+....                                                 ...++|++|+|++|.++
T Consensus       323 ~l~~~~~~~l~~~~-------------------------------------------------~~~~~L~~L~Ls~N~i~  353 (460)
T d1z7xw1         323 SFTAACCSHFSSVL-------------------------------------------------AQNRFLLELQISNNRLE  353 (460)
T ss_dssp             CCBGGGHHHHHHHH-------------------------------------------------HHCSSCCEEECCSSBCH
T ss_pred             chhhhhhhhccccc-------------------------------------------------ccccchhhhheeeeccc
Confidence            55433222221110                                                 00125777777777765


Q ss_pred             cc----Cccccc-ccccCCeEeCCCCCCCCC----CCcccCCCCCCCeeeCCCcccCccCchhh----h-cCCCCcEEec
Q 003893          605 GH----IPPQIG-NLTKIQTLNLSHNNLAGP----IPSTFSNLRNIESLDLSYNKLSWKIPYQL----V-ELNTLAVFSV  670 (788)
Q Consensus       605 ~~----~~~~~~-~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l----~-~l~~L~~L~l  670 (788)
                      +.    +++.+. ..+.|++|+|++|+|+..    +++.+..+++|++|||++|+|+......+    . +...|+.|++
T Consensus       354 ~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l  433 (460)
T d1z7xw1         354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL  433 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             CcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEEC
Confidence            32    122222 345677777777777532    23345556777777777777764333222    2 2235777777


Q ss_pred             ccCcCcc
Q 003893          671 AYNNLSG  677 (788)
Q Consensus       671 ~~N~l~~  677 (788)
                      .+|.+..
T Consensus       434 ~~~~~~~  440 (460)
T d1z7xw1         434 YDIYWSE  440 (460)
T ss_dssp             TTCCCCH
T ss_pred             CCCCCCH
Confidence            7776654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.5e-19  Score=195.90  Aligned_cols=113  Identities=20%  Similarity=0.290  Sum_probs=68.7

Q ss_pred             CccEEEcCCcccccCccc-hhHhhhcCCCCCEEeCCCCCCCCcc-cCCCCccCCCCCCCEEEcCCCCCCCCccHhhh---
Q 003893           20 SLKELYMDDARIALNTSF-LQIIGESMPSIQYLSLSNSSVSNNS-RTLDQGLCPLVHLQELHMADNDLRGSLPWCLA---   94 (788)
Q Consensus        20 ~L~~L~L~~~~~~~~~~~-~~~~~~~l~~L~~L~L~~~~l~~~~-~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~---   94 (788)
                      +|++||+++  ..+.+.. .+.++. ++++|+|+|++|.++... ..+...+..+++|++|+|++|.+++.....+.   
T Consensus         3 ~l~~ld~~~--~~i~~~~~~~l~~~-l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           3 DIQSLDIQC--EELSDARWAELLPL-LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEES--CCCCHHHHHHHHHH-HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCEEEeeC--CcCChHHHHHHHHh-CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            578888887  5554443 233444 788888888888775321 12223456777888888888877543222332   


Q ss_pred             --cCCCCCEEeCCCCcCcCCCC---hhhhcCCCCCCEEEcCCCccc
Q 003893           95 --NMTSLRILDVSSNQLIGSIS---SSPLIHLTSIEDLILSDNHFQ  135 (788)
Q Consensus        95 --~l~~L~~L~Ls~n~l~~~~~---~~~l~~l~~L~~L~l~~n~~~  135 (788)
                        ...+|++|++++|.+++...   ...+..+++|++|++++|.+.
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence              12468888888877653211   113456777777777777664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2e-17  Score=161.74  Aligned_cols=221  Identities=18%  Similarity=0.138  Sum_probs=127.0

Q ss_pred             cEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcc
Q 003893          373 QGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNM  452 (788)
Q Consensus       373 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~  452 (788)
                      +.++.++..++ .+|..+.  +++++|++++|.++...+.+|.++++|++|++++|.+..                    
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~--------------------   67 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE--------------------   67 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCC--------------------
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccc--------------------
Confidence            45555555555 3443322  356666666666665555566666666666666665542                    


Q ss_pred             cccccCcccccccccccEEeCCC-CccCCCCCccccCCcCCcEEEccCccCcccCcc-cccCCCCCCEEEccCCcCCccC
Q 003893          453 LHGQLKEGTFFNCLTLMILDLSY-NHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPI-QLCRLNQLQLLDLSNNNLHGHI  530 (788)
Q Consensus       453 ~~~~~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~  530 (788)
                         .++..+|.+++.++++.+.. |.+....+..|.++++|+++++++|.+....+. .+..++.+..+...++.+....
T Consensus        68 ---~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~  144 (242)
T d1xwdc1          68 ---VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE  144 (242)
T ss_dssp             ---EECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEEC
T ss_pred             ---eeeccccccccccccccccccccccccccccccccccccccccchhhhccccccccccccccccccccccccccccc
Confidence               23333556666666666543 455545555666667777777777666532221 1223344444444555554443


Q ss_pred             cccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCccc
Q 003893          531 PSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQ  610 (788)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  610 (788)
                      +..|...                                                    +..++.|++++|++++..+..
T Consensus       145 ~~~~~~~----------------------------------------------------~~~l~~L~l~~n~l~~i~~~~  172 (242)
T d1xwdc1         145 RNSFVGL----------------------------------------------------SFESVILWLNKNGIQEIHNCA  172 (242)
T ss_dssp             TTSSTTS----------------------------------------------------BSSCEEEECCSSCCCEECTTT
T ss_pred             ccccccc----------------------------------------------------cccceeeeccccccccccccc
Confidence            3333221                                                    235677788888777555554


Q ss_pred             ccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecc
Q 003893          611 IGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVA  671 (788)
Q Consensus       611 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~  671 (788)
                      +.....++.+++++|+++.+.+..|.++++|++|++++|+|+...+..|.++++|+.+++.
T Consensus       173 ~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         173 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             TTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             ccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            4433333334567777876666677888888888888888875555566666666665553

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.4e-17  Score=160.05  Aligned_cols=219  Identities=17%  Similarity=0.166  Sum_probs=103.6

Q ss_pred             CEEEccCCcCcccCChhhhhcCCCCcEEEeeCCcCCCCCCccccCCCCCCEEEccCCcCCCccchHHhhCCCCCcEEEcc
Q 003893          251 RLLDVSKNNFQGHIPLEIGDILSRLTVFNISMNALDGSIPSSFGNMNFLQFLDLSNNQLTGEIPEHLAMGCVSLRSLALS  330 (788)
Q Consensus       251 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~l~  330 (788)
                      +.++.++.+++ .+|..++   +++++|++++|.++...+.+|.++++|++|++++|.+...++...+.++++++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            34555555555 5554432   3566666666666544444556666666666666655534444444455555555543


Q ss_pred             c-cccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccC
Q 003893          331 N-NNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGP  409 (788)
Q Consensus       331 ~-n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  409 (788)
                      . |.+....+..|.++++|+++++++|.+....+  +.                     .+..++.+..+...++.+...
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~--~~---------------------~~~~l~~l~~~~~~n~~l~~i  143 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD--VH---------------------KIHSLQKVLLDIQDNINIHTI  143 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCC--CT---------------------TTCBSSCEEEEEESCTTCCEE
T ss_pred             ccccccccccccccccccccccccchhhhccccc--cc---------------------ccccccccccccccccccccc
Confidence            2 34444444444445555555555544432211  11                     122233333334444444433


Q ss_pred             chhhhhccc-CCcEEeccCCcCCCCCCCCCCCCcccEEE-ccCcccccccCcccccccccccEEeCCCCccCCCCCcccc
Q 003893          410 IPLEFCQLR-ILQILDISDNNISGSLPSCYDFVCIEQVH-LSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVD  487 (788)
Q Consensus       410 ~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~L~~L~-l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~  487 (788)
                      .+..|.+++ .++.|++++|+++......+..+.++++. +.+|.+. .++...|.++++|++|++++|+++...+..|.
T Consensus       144 ~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~  222 (242)
T d1xwdc1         144 ERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLE  222 (242)
T ss_dssp             CTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCCCCCSSSCT
T ss_pred             cccccccccccceeeecccccccccccccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCCccCHHHHc
Confidence            344444443 56666666666654333333333333332 2222222 34443555556666666666665544344444


Q ss_pred             CCcCCcEEEc
Q 003893          488 GLSQLSYLIL  497 (788)
Q Consensus       488 ~l~~L~~L~L  497 (788)
                      ++++|+.+++
T Consensus       223 ~l~~L~~l~~  232 (242)
T d1xwdc1         223 NLKKLRARST  232 (242)
T ss_dssp             TCCEEESSSE
T ss_pred             CCcccccCcC
Confidence            4444444433

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=2e-16  Score=152.47  Aligned_cols=146  Identities=23%  Similarity=0.305  Sum_probs=97.2

Q ss_pred             ccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhh
Q 003893          462 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE  541 (788)
Q Consensus       462 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  541 (788)
                      +..+++++++++++|.++..  ..+.++++|+.++++++...+.  ..+...+.++.+.++++.+....+  +..     
T Consensus        81 l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~--~~~-----  149 (227)
T d1h6ua2          81 LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--LAG-----  149 (227)
T ss_dssp             GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GGG-----
T ss_pred             cccccccccccccccccccc--cccccccccccccccccccccc--chhccccchhhhhchhhhhchhhh--hcc-----
Confidence            56666777777777766632  3466677777777777765532  235556677777777666543221  111     


Q ss_pred             hccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEe
Q 003893          542 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLN  621 (788)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  621 (788)
                                                                      +++|+.|++++|.+.+..  .++++++|+.|+
T Consensus       150 ------------------------------------------------~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~  179 (227)
T d1h6ua2         150 ------------------------------------------------LTNLQYLSIGNAQVSDLT--PLANLSKLTTLK  179 (227)
T ss_dssp             ------------------------------------------------CTTCCEEECCSSCCCCCG--GGTTCTTCCEEE
T ss_pred             ------------------------------------------------ccccccccccccccccch--hhcccccceecc
Confidence                                                            126788888888776432  377788888888


Q ss_pred             CCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEeccc
Q 003893          622 LSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAY  672 (788)
Q Consensus       622 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~  672 (788)
                      |++|++++. + .++++++|++|++++|+++.. + .+..+++|++|++++
T Consensus       180 Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         180 ADDNKISDI-S-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred             cCCCccCCC-h-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence            888888753 3 377788888888888888753 3 367788888888763

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=5.6e-17  Score=156.46  Aligned_cols=189  Identities=20%  Similarity=0.285  Sum_probs=109.9

Q ss_pred             CCCCCCcEEEcccCcCCCCCCccccCCCCccEEEccCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEE
Q 003893          367 SKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIMPKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQV  446 (788)
Q Consensus       367 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L  446 (788)
                      ..+.+|+.|++.+|.++..  ..+..+++|++|++++|.+.+..+  +..+++++.+++++|.++.              
T Consensus        38 ~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~--------------   99 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN--------------   99 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC--------------
T ss_pred             HHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc--------------
Confidence            3455566666666655532  235556666666666665554332  5556666666666665431              


Q ss_pred             EccCcccccccCcccccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcC
Q 003893          447 HLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNL  526 (788)
Q Consensus       447 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  526 (788)
                                ++  .+.++++|+.++++++...+.  ..+...+.++.+.++++.+...  ..+..+++|++|++++|.+
T Consensus       100 ----------i~--~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~  163 (227)
T d1h6ua2         100 ----------VS--AIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQV  163 (227)
T ss_dssp             ----------CG--GGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCC
T ss_pred             ----------cc--ccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhcccccccccccccccc
Confidence                      11  244455566666665554422  2244455566666666655422  2345566666666666665


Q ss_pred             CccCcccccccchhhhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCccccc
Q 003893          527 HGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGH  606 (788)
Q Consensus       527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  606 (788)
                      .+..+  +..++                                                     +|+.|++++|++++.
T Consensus       164 ~~~~~--l~~l~-----------------------------------------------------~L~~L~Ls~n~l~~l  188 (227)
T d1h6ua2         164 SDLTP--LANLS-----------------------------------------------------KLTTLKADDNKISDI  188 (227)
T ss_dssp             CCCGG--GTTCT-----------------------------------------------------TCCEEECCSSCCCCC
T ss_pred             ccchh--hcccc-----------------------------------------------------cceecccCCCccCCC
Confidence            43221  22221                                                     577777777777643


Q ss_pred             CcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCC
Q 003893          607 IPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSY  648 (788)
Q Consensus       607 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  648 (788)
                       + .++++++|++|+|++|+++++.  .++++++|++|++++
T Consensus       189 -~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         189 -S-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             -G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             -h-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence             2 3778888888888888888553  378888888888863

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=7.1e-17  Score=150.85  Aligned_cols=117  Identities=25%  Similarity=0.351  Sum_probs=109.4

Q ss_pred             ccCCCceEECCCCcccc-cCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcE
Q 003893          589 VPSLLSGLDLSCNRLIG-HIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAV  667 (788)
Q Consensus       589 ~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  667 (788)
                      +|+++++|+|++|+|++ ..+..|.++++|+.|+|++|+++...+..|..+++|++|++++|+|+...|..|..+++|++
T Consensus        27 lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~  106 (192)
T d1w8aa_          27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT  106 (192)
T ss_dssp             CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCE
T ss_pred             CCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccc
Confidence            45689999999999986 45777899999999999999999999999999999999999999999988999999999999


Q ss_pred             EecccCcCcccCCCCccccCCCCcCCcCCCCCCCCCCC
Q 003893          668 FSVAYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL  705 (788)
Q Consensus       668 L~l~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~  705 (788)
                      |+|++|.|++..|+.|..+++++.+++.+||+.|+|+.
T Consensus       107 L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~  144 (192)
T d1w8aa_         107 LNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             EECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             cccCCccccccCHHHhcCCcccccccccccccccccch
Confidence            99999999999999999999999999999999999874

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.3e-15  Score=144.43  Aligned_cols=146  Identities=25%  Similarity=0.322  Sum_probs=104.2

Q ss_pred             ccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhh
Q 003893          462 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE  541 (788)
Q Consensus       462 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  541 (788)
                      +..+++|++|++++|++++..  .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|.+....  .+...    
T Consensus        64 l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~~~--~l~~l----  133 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDIN--GLVHL----  133 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCCG--GGGGC----
T ss_pred             HhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccccccccccccc--ccccc----
Confidence            556777778888887777532  35677778888888887763 33 4677788888888877765321  12222    


Q ss_pred             hccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEe
Q 003893          542 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLN  621 (788)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  621 (788)
                                                                       +.++.+++++|.+++  +..+..+++|+.++
T Consensus       134 -------------------------------------------------~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~  162 (210)
T d1h6ta2         134 -------------------------------------------------PQLESLYLGNNKITD--ITVLSRLTKLDTLS  162 (210)
T ss_dssp             -------------------------------------------------TTCCEEECCSSCCCC--CGGGGGCTTCSEEE
T ss_pred             -------------------------------------------------ccccccccccccccc--cccccccccccccc
Confidence                                                             267788888888764  23567788888899


Q ss_pred             CCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEeccc
Q 003893          622 LSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAY  672 (788)
Q Consensus       622 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~  672 (788)
                      +++|++++..  .+.++++|++|++++|+|+. +| .+..+++|++|++++
T Consensus       163 l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         163 LEDNQISDIV--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCSSCCCCCG--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             cccccccccc--cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            9888888543  37888889999999998874 44 578888888888864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=3.6e-15  Score=139.93  Aligned_cols=142  Identities=30%  Similarity=0.412  Sum_probs=81.8

Q ss_pred             ccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhh
Q 003893          462 FFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHE  541 (788)
Q Consensus       462 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  541 (788)
                      ++.+++|++|++++|++++..  .+.++++|++|++++|.+.. ++ .+.++++|+.|++++|.+....+  +..+    
T Consensus        58 l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~~~~~~~~~~--~~~l----  127 (199)
T d2omxa2          58 VEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLFNNQITDIDP--LKNL----  127 (199)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCCGG--GTTC----
T ss_pred             cccCCCcCcCccccccccCcc--cccCCccccccccccccccc-cc-ccccccccccccccccccccccc--cchh----
Confidence            455666666666666666432  25666666666666666652 22 35666666666666665543211  1111    


Q ss_pred             hccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEe
Q 003893          542 RYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLN  621 (788)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  621 (788)
                                                                       ++|+.|++++|++.. + ..+..+++|+.|+
T Consensus       128 -------------------------------------------------~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~  156 (199)
T d2omxa2         128 -------------------------------------------------TNLNRLELSSNTISD-I-SALSGLTSLQQLN  156 (199)
T ss_dssp             -------------------------------------------------TTCSEEECCSSCCCC-C-GGGTTCTTCSEEE
T ss_pred             -------------------------------------------------hhhHHhhhhhhhhcc-c-ccccccccccccc
Confidence                                                             156666666666652 2 2456666677777


Q ss_pred             CCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEE
Q 003893          622 LSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVF  668 (788)
Q Consensus       622 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  668 (788)
                      +++|++++..  .++++++|++|++++|+++. ++ .+..+++|+.|
T Consensus       157 l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         157 FSSNQVTDLK--PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             cccccccCCc--cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            7777666432  36666677777777776663 22 35566666554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=6.7e-15  Score=139.31  Aligned_cols=164  Identities=24%  Similarity=0.346  Sum_probs=95.8

Q ss_pred             CCCcEEEccccccCccccccccCCCccCceeccCccCcccCCccCCCCCCCcEEEcccCcCCCCCCccccCCCCccEEEc
Q 003893          322 VSLRSLALSNNNLEGHMFSRNFNLTNLIWLQLEGNHFVGEIPQSLSKCSSLQGLFLSNNSLSGKIPRWLGNLTVLRHIIM  401 (788)
Q Consensus       322 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  401 (788)
                      .+|++|++++|.++...  .+..+++|++|++++|++++..  .+..+++|+.|++++|++++ ++ .+..+++|+.|++
T Consensus        46 ~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred             cCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-ccccccccccccc
Confidence            34555555555544322  2344555555555555555322  24455566666666665553 22 3555666666666


Q ss_pred             cCCeeccCchhhhhcccCCcEEeccCCcCCCCCCCCCCCCcccEEEccCcccccccCcccccccccccEEeCCCCccCCC
Q 003893          402 PKNHIEGPIPLEFCQLRILQILDISDNNISGSLPSCYDFVCIEQVHLSKNMLHGQLKEGTFFNCLTLMILDLSYNHLNGN  481 (788)
Q Consensus       402 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~  481 (788)
                      ++|.+...  ..+..++.++.+++++|.++.                        .+  .+..+++|+++++++|++++.
T Consensus       120 ~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~------------------------~~--~~~~l~~L~~l~l~~n~l~~i  171 (210)
T d1h6ta2         120 EHNGISDI--NGLVHLPQLESLYLGNNKITD------------------------IT--VLSRLTKLDTLSLEDNQISDI  171 (210)
T ss_dssp             TTSCCCCC--GGGGGCTTCCEEECCSSCCCC------------------------CG--GGGGCTTCSEEECCSSCCCCC
T ss_pred             cccccccc--ccccccccccccccccccccc------------------------cc--ccccccccccccccccccccc
Confidence            66655422  235566666666666665541                        11  345567777788888777643


Q ss_pred             CCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccC
Q 003893          482 IPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSN  523 (788)
Q Consensus       482 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  523 (788)
                      .  .+.++++|++|++++|+++. ++ .+.++++|++|+|++
T Consensus       172 ~--~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         172 V--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             G--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             c--cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            2  36777888888888887763 33 577788888888753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=6.5e-15  Score=138.18  Aligned_cols=162  Identities=25%  Similarity=0.340  Sum_probs=130.9

Q ss_pred             cccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhh
Q 003893          463 FNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHER  542 (788)
Q Consensus       463 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~  542 (788)
                      ..++++++|++++|.++..  +.++.+++|++|++++|++++..  .+.++++|++|++++|.+....+  +..+.    
T Consensus        37 ~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~~~~--l~~l~----  106 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITP--LANLT----  106 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GTTCT----
T ss_pred             HHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCcccccccccccccccccc--ccccc----
Confidence            4567899999999999853  35788999999999999998543  38899999999999998865432  33322    


Q ss_pred             ccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeC
Q 003893          543 YNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNL  622 (788)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  622 (788)
                                                                       .|+.|++++|.+...  ..+..+++|+.|++
T Consensus       107 -------------------------------------------------~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l  135 (199)
T d2omxa2         107 -------------------------------------------------NLTGLTLFNNQITDI--DPLKNLTNLNRLEL  135 (199)
T ss_dssp             -------------------------------------------------TCSEEECCSSCCCCC--GGGTTCTTCSEEEC
T ss_pred             -------------------------------------------------ccccccccccccccc--cccchhhhhHHhhh
Confidence                                                             799999999998754  35788999999999


Q ss_pred             CCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCCccccCCCCc
Q 003893          623 SHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPERAAQFATFNE  691 (788)
Q Consensus       623 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~  691 (788)
                      ++|++.. + +.+..+++|++|++++|++++. + .+..+++|++|++++|+++.. + .+..+++++.
T Consensus       136 ~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~i-~-~l~~L~~L~~  198 (199)
T d2omxa2         136 SSNTISD-I-SALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSDI-S-VLAKLTNLES  198 (199)
T ss_dssp             CSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCSE
T ss_pred             hhhhhcc-c-ccccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCCC-c-cccCCCCCCc
Confidence            9999984 3 3588999999999999999854 3 488999999999999999863 3 3456665543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4.3e-15  Score=147.89  Aligned_cols=224  Identities=16%  Similarity=0.158  Sum_probs=137.7

Q ss_pred             cEEEcCCcccccCccchhHhhhcCCCCCEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCC-ccHhhhcCCCCC
Q 003893           22 KELYMDDARIALNTSFLQIIGESMPSIQYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGS-LPWCLANMTSLR  100 (788)
Q Consensus        22 ~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~  100 (788)
                      +.+|+++  ..+.......+..  ..+..+.++...+....    .......+|++|++++|.+++. +...+.++++|+
T Consensus         3 ~~lDLs~--~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~----~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~   74 (284)
T d2astb2           3 QTLDLTG--KNLHPDVTGRLLS--QGVIAFRCPRSFMDQPL----AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ   74 (284)
T ss_dssp             SEEECTT--CBCCHHHHHHHHH--TTCSEEECTTCEECSCC----CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred             CEEECCC--CCCCchHHHHHHh--ccceEeeccccccccch----hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcc
Confidence            4788888  4443333222322  24667777766543322    2234556899999999987754 445578899999


Q ss_pred             EEeCCCCcCcCCCChhhhcCCCCCCEEEcCCCc-ccCccCcc-ccCCCCCccEEEccCCc-cchhhhccccCCCCccccc
Q 003893          101 ILDVSSNQLIGSISSSPLIHLTSIEDLILSDNH-FQIPISLE-PLFNHSRLKIFDAENNE-INAEIIESHSLTTPNFQLQ  177 (788)
Q Consensus       101 ~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~-~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~L~  177 (788)
                      +|++++|.+.+.... .+.++++|++|++++|. ++. .... ...++++|+.|+++++. +++.....           
T Consensus        75 ~L~L~~~~l~~~~~~-~l~~~~~L~~L~Ls~c~~itd-~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~-----------  141 (284)
T d2astb2          75 NLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSE-FALQTLLSSCSRLDELNLSWCFDFTEKHVQV-----------  141 (284)
T ss_dssp             EEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCH-HHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-----------
T ss_pred             cccccccCCCcHHHH-HHhcCCCCcCccccccccccc-cccchhhHHHHhccccccccccccccccchh-----------
Confidence            999999987755554 67889999999999864 432 1111 23468899999998864 33221110           


Q ss_pred             EEEccCCCcCCccCCccc-cCCCCCcEEEecCCC--CCccCchHHhhcCCCCCEEEccCCc-ccCcCccCccCCCCcCEE
Q 003893          178 SLLLSSGYRDGITFPKFL-YNQHDLEYVRLSHIK--MNEEFPNWLLENNTKLRQLSLVNDS-LVGPFRLPIHSHKQLRLL  253 (788)
Q Consensus       178 ~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~--~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L  253 (788)
                                      .+ ..++.|+.|+++++.  +++.....+..++++|++|++++|. +++.....+..+++|++|
T Consensus       142 ----------------~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         142 ----------------AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             ----------------HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             ----------------hhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence                            01 123456666666542  3333334445567777777777653 454455556667777777


Q ss_pred             EccCC-cCcccCChhhhhcCCCCcEEEeeCC
Q 003893          254 DVSKN-NFQGHIPLEIGDILSRLTVFNISMN  283 (788)
Q Consensus       254 ~l~~n-~l~~~~~~~~~~~~~~L~~L~L~~n  283 (788)
                      ++++| .+++.....+.+ +++|++|+++++
T Consensus       206 ~L~~C~~i~~~~l~~L~~-~~~L~~L~l~~~  235 (284)
T d2astb2         206 SLSRCYDIIPETLLELGE-IPTLKTLQVFGI  235 (284)
T ss_dssp             ECTTCTTCCGGGGGGGGG-CTTCCEEECTTS
T ss_pred             ECCCCCCCChHHHHHHhc-CCCCCEEeeeCC
Confidence            77775 454443334443 667777777776

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.9e-15  Score=149.11  Aligned_cols=184  Identities=22%  Similarity=0.224  Sum_probs=107.0

Q ss_pred             CCCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCcCccCccCCCCcCEEEccCC-cCcccCChhhhhcCCCC
Q 003893          197 NQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGPFRLPIHSHKQLRLLDVSKN-NFQGHIPLEIGDILSRL  275 (788)
Q Consensus       197 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~L  275 (788)
                      ...+|++|++++|.+++.....++..+++|++|++++|.+.+.....+..+++|++|++++| .+++..-..+...+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            34578999999888876666666788899999999988877666666777888888888886 44432222334457788


Q ss_pred             cEEEeeCCc-CCCC-CCccc-cCCCCCCEEEccCC--cCCCccchHHhhCCCCCcEEEccccc-cCccccccccCCCccC
Q 003893          276 TVFNISMNA-LDGS-IPSSF-GNMNFLQFLDLSNN--QLTGEIPEHLAMGCVSLRSLALSNNN-LEGHMFSRNFNLTNLI  349 (788)
Q Consensus       276 ~~L~L~~n~-l~~~-~~~~~-~~l~~L~~L~L~~n--~i~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~  349 (788)
                      ++|++++|. ++.. ....+ ...++|+.|+++++  .+++.....+..++++|++|++++|. +++.....+.++++|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            888887764 2211 11122 23466777777764  23322223333456667777776643 4433444444455555


Q ss_pred             ceeccCc-cCcccCCccCCCCCCCcEEEcccC
Q 003893          350 WLQLEGN-HFVGEIPQSLSKCSSLQGLFLSNN  380 (788)
Q Consensus       350 ~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n  380 (788)
                      +|++++| .+++.....++++++|+.|+++++
T Consensus       204 ~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         204 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            5555553 233222223333444444444433

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=5.2e-14  Score=126.17  Aligned_cols=78  Identities=19%  Similarity=0.184  Sum_probs=46.7

Q ss_pred             CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCC-cccCCCCCCCeeeCCCcccCccC---chhhhcCCCCcE
Q 003893          592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIP-STFSNLRNIESLDLSYNKLSWKI---PYQLVELNTLAV  667 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~---~~~l~~l~~L~~  667 (788)
                      +|++|++++|++++..+..+..+++|+.|++++|+++.... ..+..+++|++|++++|+++...   +..+..+++|++
T Consensus        64 ~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~  143 (162)
T d1a9na_          64 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRV  143 (162)
T ss_dssp             SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSE
T ss_pred             chhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCe
Confidence            45555555555554444445566677777777777664321 35666777777777777776322   124566777777


Q ss_pred             Ee
Q 003893          668 FS  669 (788)
Q Consensus       668 L~  669 (788)
                      ||
T Consensus       144 LD  145 (162)
T d1a9na_         144 LD  145 (162)
T ss_dssp             ET
T ss_pred             eC
Confidence            76

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=6.7e-14  Score=124.57  Aligned_cols=112  Identities=16%  Similarity=0.226  Sum_probs=98.0

Q ss_pred             CCceEECCCCcccccCcccccccccCCeEeCCCC-CCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEec
Q 003893          592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN-NLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSV  670 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l  670 (788)
                      ..+.++.+++.+. ..|..+..+++|++|++++| .++.+.+..|.++++|+.|++++|+|+...+.+|..+++|++|++
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            4567899998887 56778899999999999876 588888889999999999999999999888999999999999999


Q ss_pred             ccCcCcccCCCCccccCCCCcCCcCCCCCCCCCCC
Q 003893          671 AYNNLSGKIPERAAQFATFNESSYEGNPFLCGPPL  705 (788)
Q Consensus       671 ~~N~l~~~~~~~~~~~~~l~~~~~~~Np~~C~~~~  705 (788)
                      ++|+++...+..+.. ..+..+++++|||.|+|..
T Consensus        88 s~N~l~~l~~~~~~~-~~l~~L~L~~Np~~C~C~~  121 (156)
T d2ifga3          88 SFNALESLSWKTVQG-LSLQELVLSGNPLHCSCAL  121 (156)
T ss_dssp             CSSCCSCCCSTTTCS-CCCCEEECCSSCCCCCGGG
T ss_pred             cCCCCcccChhhhcc-ccccccccCCCcccCCchH
Confidence            999999766665544 4688999999999999975

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=4.8e-14  Score=126.40  Aligned_cols=134  Identities=18%  Similarity=0.153  Sum_probs=107.3

Q ss_pred             cccccccccEEeCCCCccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchh
Q 003893          461 TFFNCLTLMILDLSYNHLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLH  540 (788)
Q Consensus       461 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~  540 (788)
                      .|.++..+++|++++|+|+. ++..+..+++|+.|++++|.++..  +.+..+++|++|++++|+++...+..+..+.  
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~--   87 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP--   87 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT--
T ss_pred             hccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccc--
Confidence            46778889999999999985 466677889999999999999844  3588899999999999999877665555444  


Q ss_pred             hhccCCCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCc-ccccccccCCe
Q 003893          541 ERYNNGSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIP-PQIGNLTKIQT  619 (788)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~  619 (788)
                                                                         +|+.|++++|+++.... ..+..+++|++
T Consensus        88 ---------------------------------------------------~L~~L~L~~N~i~~~~~l~~l~~l~~L~~  116 (162)
T d1a9na_          88 ---------------------------------------------------DLTELILTNNSLVELGDLDPLASLKSLTY  116 (162)
T ss_dssp             ---------------------------------------------------TCCEEECCSCCCCCGGGGGGGGGCTTCCE
T ss_pred             ---------------------------------------------------ccccceeccccccccccccccccccccch
Confidence                                                               89999999999985432 56888999999


Q ss_pred             EeCCCCCCCCCC---CcccCCCCCCCeeeCCCcccC
Q 003893          620 LNLSHNNLAGPI---PSTFSNLRNIESLDLSYNKLS  652 (788)
Q Consensus       620 L~Ls~N~l~~~~---~~~~~~l~~L~~L~Ls~N~l~  652 (788)
                      |++++|.++...   +..+..+|+|++||  +..++
T Consensus       117 L~l~~N~i~~~~~~r~~~i~~lp~L~~LD--~~~i~  150 (162)
T d1a9na_         117 LCILRNPVTNKKHYRLYVIYKVPQVRVLD--FQKVK  150 (162)
T ss_dssp             EECCSSGGGGSTTHHHHHHHHCTTCSEET--TEECC
T ss_pred             hhcCCCccccccchHHHHHHHCCCcCeeC--CCCCC
Confidence            999999997543   23577899999988  44454

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=4.9e-13  Score=113.55  Aligned_cols=103  Identities=26%  Similarity=0.466  Sum_probs=73.0

Q ss_pred             CEEeCCCCCCCCcccCCCCccCCCCCCCEEEcCCCCCCCCccHhhhcCCCCCEEeCCCCcCcCCCChhhhcCCCCCCEEE
Q 003893           49 QYLSLSNSSVSNNSRTLDQGLCPLVHLQELHMADNDLRGSLPWCLANMTSLRILDVSSNQLIGSISSSPLIHLTSIEDLI  128 (788)
Q Consensus        49 ~~L~L~~~~l~~~~~~l~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~  128 (788)
                      |+|++++|+++..     ..+.++++|++|++++|+++ .+|..|+.+++|++|++++|.+. .++  .+..+++|++|+
T Consensus         1 R~L~Ls~n~l~~l-----~~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~--~~~~l~~L~~L~   71 (124)
T d1dcea3           1 RVLHLAHKDLTVL-----CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD--GVANLPRLQELL   71 (124)
T ss_dssp             SEEECTTSCCSSC-----CCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG--GGTTCSSCCEEE
T ss_pred             CEEEcCCCCCCCC-----cccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC--ccccccccCeEE
Confidence            5778888777533     24677778888888888877 45666777888888888888776 444  477788888888


Q ss_pred             cCCCcccCccCccccCCCCCccEEEccCCccc
Q 003893          129 LSDNHFQIPISLEPLFNHSRLKIFDAENNEIN  160 (788)
Q Consensus       129 l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~~~  160 (788)
                      +++|+++.......+..+++|+.+++++|++.
T Consensus        72 l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          72 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            88887764333345666777777777777664

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.40  E-value=4.9e-14  Score=145.08  Aligned_cols=250  Identities=17%  Similarity=0.186  Sum_probs=127.7

Q ss_pred             chhHhhhcCCCCCEEeCCCCCCCCcc-cCCCCccCCCCCCCEEEcCCCCCCCC----------ccHhhhcCCCCCEEeCC
Q 003893           37 FLQIIGESMPSIQYLSLSNSSVSNNS-RTLDQGLCPLVHLQELHMADNDLRGS----------LPWCLANMTSLRILDVS  105 (788)
Q Consensus        37 ~~~~~~~~l~~L~~L~L~~~~l~~~~-~~l~~~l~~l~~L~~L~L~~n~i~~~----------~~~~~~~l~~L~~L~Ls  105 (788)
                      +...+.+ ...|+.|+|++|.+.... ..+.+.+...++|++|+++++.....          +...+..+++|++|+++
T Consensus        23 l~~~L~~-~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          23 VFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TSHHHHH-CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHhh-CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            3455555 777888888887764321 11223466677888888877654321          12334556778888888


Q ss_pred             CCcCcCCCCh---hhhcCCCCCCEEEcCCCcccCccCc---c---------ccCCCCCccEEEccCCccchhhhccccCC
Q 003893          106 SNQLIGSISS---SPLIHLTSIEDLILSDNHFQIPISL---E---------PLFNHSRLKIFDAENNEINAEIIESHSLT  170 (788)
Q Consensus       106 ~n~l~~~~~~---~~l~~l~~L~~L~l~~n~~~~~~~~---~---------~l~~l~~L~~L~l~~n~~~~~~~~~~~~~  170 (788)
                      +|.+......   ..+..+++|++|++++|.+......   .         .....+.|+.+.+++|.+.......    
T Consensus       102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~----  177 (344)
T d2ca6a1         102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE----  177 (344)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH----
T ss_pred             ccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccc----
Confidence            7776533111   0233566777777777765311000   0         0012333444444444332211100    


Q ss_pred             CCcccccEEEccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchHHhhcCCCCCEEEccCCcccCc-----CccCcc
Q 003893          171 TPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNWLLENNTKLRQLSLVNDSLVGP-----FRLPIH  245 (788)
Q Consensus       171 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~  245 (788)
                                          +...                         +..++.|++|++++|.+...     ....+.
T Consensus       178 --------------------l~~~-------------------------l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~  212 (344)
T d2ca6a1         178 --------------------WAKT-------------------------FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA  212 (344)
T ss_dssp             --------------------HHHH-------------------------HHHCTTCCEEECCSSCCCHHHHHHHHHTTGG
T ss_pred             --------------------ccch-------------------------hhhhhhhcccccccccccccccccchhhhhc
Confidence                                1111                         23444555555555544321     122344


Q ss_pred             CCCCcCEEEccCCcCcccCChhh---hhcCCCCcEEEeeCCcCCCCCCc----ccc--CCCCCCEEEccCCcCCCc----
Q 003893          246 SHKQLRLLDVSKNNFQGHIPLEI---GDILSRLTVFNISMNALDGSIPS----SFG--NMNFLQFLDLSNNQLTGE----  312 (788)
Q Consensus       246 ~~~~L~~L~l~~n~l~~~~~~~~---~~~~~~L~~L~L~~n~l~~~~~~----~~~--~l~~L~~L~L~~n~i~~~----  312 (788)
                      .+++|+.|++++|.++......+   ....++|++|++++|.+++....    .+.  ..+.|++|++++|.++..    
T Consensus       213 ~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~  292 (344)
T d2ca6a1         213 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT  292 (344)
T ss_dssp             GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHH
T ss_pred             chhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHH
Confidence            55666666666665542211111   12255667777777666543222    222  235678888888877632    


Q ss_pred             cchHHhhCCCCCcEEEccccccCc
Q 003893          313 IPEHLAMGCVSLRSLALSNNNLEG  336 (788)
Q Consensus       313 ~~~~~~~~l~~L~~L~l~~n~i~~  336 (788)
                      +...+..++++|++|++++|.+..
T Consensus       293 l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         293 LKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHHHccCCCCCEEECCCCcCCC
Confidence            223333346778888888887753

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=1.6e-12  Score=110.32  Aligned_cols=84  Identities=31%  Similarity=0.416  Sum_probs=64.5

Q ss_pred             CCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccC-chhhhcCCCCcEEec
Q 003893          592 LLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKI-PYQLVELNTLAVFSV  670 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~l  670 (788)
                      .|++|++++|+++ .+|..++.+++|+.|++++|+|++. | .+..+++|++|++++|+|+... ...+..+++|+.|++
T Consensus        21 ~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l   97 (124)
T d1dcea3          21 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL   97 (124)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred             CCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEEC
Confidence            6888888888887 4566788888888888888888854 3 4788888888888888887543 256777888888888


Q ss_pred             ccCcCccc
Q 003893          671 AYNNLSGK  678 (788)
Q Consensus       671 ~~N~l~~~  678 (788)
                      ++|+++..
T Consensus        98 ~~N~i~~~  105 (124)
T d1dcea3          98 QGNSLCQE  105 (124)
T ss_dssp             TTSGGGGS
T ss_pred             CCCcCCcC
Confidence            88888753

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.36  E-value=8.7e-14  Score=143.18  Aligned_cols=198  Identities=18%  Similarity=0.152  Sum_probs=125.1

Q ss_pred             CCCCCCCccEEEcCCcccccCccchhHh----hhcCCCCCEEeCCCCCCCCcccC-------CCCccCCCCCCCEEEcCC
Q 003893           14 GFPHFKSLKELYMDDARIALNTSFLQII----GESMPSIQYLSLSNSSVSNNSRT-------LDQGLCPLVHLQELHMAD   82 (788)
Q Consensus        14 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~----~~~l~~L~~L~L~~~~l~~~~~~-------l~~~l~~l~~L~~L~L~~   82 (788)
                      ++.+...|+.|+|++  +.+.......+    .. .++|+.|+++++........       +.+.+..+++|++|+|++
T Consensus        26 ~L~~~~~l~~L~Ls~--n~i~~~~~~~l~~~l~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSG--NTIGTEAARWLSENIAS-KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             HHHHCSCCCEEECTT--SEECHHHHHHHHHTTTT-CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHhhCCCCCEEECcC--CcCCHHHHHHHHHHHHh-CCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            455678999999999  55555444443    34 68999999998865433221       223456789999999999


Q ss_pred             CCCCCC----ccHhhhcCCCCCEEeCCCCcCcCCCCh---hh---------hcCCCCCCEEEcCCCcccCccC---cccc
Q 003893           83 NDLRGS----LPWCLANMTSLRILDVSSNQLIGSISS---SP---------LIHLTSIEDLILSDNHFQIPIS---LEPL  143 (788)
Q Consensus        83 n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~---------l~~l~~L~~L~l~~n~~~~~~~---~~~l  143 (788)
                      |.+...    +...+..+++|++|++++|.+......   ..         ....+.|+.+++++|.+.....   ...+
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l  182 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  182 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchh
Confidence            998875    344556889999999999976521100   00         1357889999999998752211   1234


Q ss_pred             CCCCCccEEEccCCccchhhhccccCCCCcccccEEEccCCCcCCccCCccccCCCCCcEEEecCCCCCccCchH---Hh
Q 003893          144 FNHSRLKIFDAENNEINAEIIESHSLTTPNFQLQSLLLSSGYRDGITFPKFLYNQHDLEYVRLSHIKMNEEFPNW---LL  220 (788)
Q Consensus       144 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~  220 (788)
                      ..++.|+.|++++|.+.......                       .+...+..+++|++|++++|.++......   .+
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~-----------------------~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l  239 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEH-----------------------LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL  239 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHH-----------------------HHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred             hhhhhhccccccccccccccccc-----------------------chhhhhcchhhhcccccccccccccccccccccc
Confidence            56788999999988876432111                       01123445666777777777664332211   12


Q ss_pred             hcCCCCCEEEccCCccc
Q 003893          221 ENNTKLRQLSLVNDSLV  237 (788)
Q Consensus       221 ~~l~~L~~L~l~~~~~~  237 (788)
                      ..+++|++|++++|.+.
T Consensus       240 ~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         240 KSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             GGCTTCCEEECTTCCCC
T ss_pred             cccccchhhhhhcCccC
Confidence            34555555555555443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.4e-11  Score=109.30  Aligned_cols=85  Identities=19%  Similarity=0.169  Sum_probs=52.2

Q ss_pred             CCceEECCCC-cccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEec
Q 003893          592 LLSGLDLSCN-RLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSV  670 (788)
Q Consensus       592 ~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l  670 (788)
                      +|++|++++| .++.+.+..|.++++|+.|+|++|+|+.+.+.+|..+++|++|+|++|+|+...+..|.. .+|+.|++
T Consensus        32 ~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L~L  110 (156)
T d2ifga3          32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELVL  110 (156)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEEEC
T ss_pred             ccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcc-cccccccc
Confidence            4445555433 355455556666667777777777776666666777777777777777776443434433 35777777


Q ss_pred             ccCcCcc
Q 003893          671 AYNNLSG  677 (788)
Q Consensus       671 ~~N~l~~  677 (788)
                      ++|++.+
T Consensus       111 ~~Np~~C  117 (156)
T d2ifga3         111 SGNPLHC  117 (156)
T ss_dssp             CSSCCCC
T ss_pred             CCCcccC
Confidence            7777754

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=2.4e-13  Score=126.43  Aligned_cols=143  Identities=20%  Similarity=0.231  Sum_probs=96.0

Q ss_pred             ccEEeCCCC--ccCCCCCccccCCcCCcEEEccCccCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccC
Q 003893          468 LMILDLSYN--HLNGNIPDRVDGLSQLSYLILAHNNLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNN  545 (788)
Q Consensus       468 L~~L~l~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~  545 (788)
                      .+.+++.+.  .+. ..+..+..+++|++|++++|+++. ++ .+..+++|++|++++|.++... ..+..         
T Consensus        25 ~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~i~-~~~~~---------   91 (198)
T d1m9la_          25 AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIE-NLDAV---------   91 (198)
T ss_dssp             CSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECSCS-SHHHH---------
T ss_pred             cceeeeecccCchh-hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccccc-ccccc---------
Confidence            444555443  222 344567778888888888888874 33 4777888888888888776432 11111         


Q ss_pred             CCCCCCcccceeecCCcccCcccccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCC
Q 003893          546 GSSLQPFETSFVIMGGMDVDPKKQILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHN  625 (788)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  625 (788)
                                                                  ++.|+.|++++|+++..  ..+..+++|+.|++++|
T Consensus        92 --------------------------------------------~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N  125 (198)
T d1m9la_          92 --------------------------------------------ADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNN  125 (198)
T ss_dssp             --------------------------------------------HHHCCEEECSEEECCCH--HHHHHHHHSSEEEESEE
T ss_pred             --------------------------------------------ccccccccccccccccc--ccccccccccccccccc
Confidence                                                        12578888888888753  34777888888888888


Q ss_pred             CCCCCCC-cccCCCCCCCeeeCCCcccCccCchh----------hhcCCCCcEEe
Q 003893          626 NLAGPIP-STFSNLRNIESLDLSYNKLSWKIPYQ----------LVELNTLAVFS  669 (788)
Q Consensus       626 ~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~----------l~~l~~L~~L~  669 (788)
                      +++.... ..+..+++|++|++++|++....+..          +..+++|+.||
T Consensus       126 ~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         126 KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             ECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             hhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            8875422 46788888888888888876443321          55677788776

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.15  E-value=8.3e-13  Score=122.69  Aligned_cols=132  Identities=24%  Similarity=0.200  Sum_probs=103.4

Q ss_pred             CCcEEEccCc--cCcccCcccccCCCCCCEEEccCCcCCccCcccccccchhhhccCCCCCCCcccceeecCCcccCccc
Q 003893          491 QLSYLILAHN--NLEGEVPIQLCRLNQLQLLDLSNNNLHGHIPSCFDNTTLHERYNNGSSLQPFETSFVIMGGMDVDPKK  568 (788)
Q Consensus       491 ~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  568 (788)
                      .++.+++.+.  .+. ..+..+..+++|++|++++|.|+...  .+..++                              
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~i~--~l~~l~------------------------------   70 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKIS--SLSGME------------------------------   70 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESCCC--CHHHHT------------------------------
T ss_pred             ccceeeeecccCchh-hhhhHHhcccccceeECcccCCCCcc--cccCCc------------------------------
Confidence            3455666554  233 45677889999999999999998542  244433                              


Q ss_pred             ccccceEeeecCceecccCCccCCCceEECCCCcccccCcccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCC
Q 003893          569 QILESFDFTTKSITYTYQGRVPSLLSGLDLSCNRLIGHIPPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSY  648 (788)
Q Consensus       569 ~~l~~l~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  648 (788)
                                             +|+.|++++|.++ .+|..+..+++|+.|++++|+++..  +.+..+++|++|++++
T Consensus        71 -----------------------~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~  124 (198)
T d1m9la_          71 -----------------------NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSN  124 (198)
T ss_dssp             -----------------------TCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHHSSEEEESE
T ss_pred             -----------------------cccChhhcccccc-ccccccccccccccccccccccccc--cccccccccccccccc
Confidence                                   8999999999998 4555566678899999999999953  4588899999999999


Q ss_pred             cccCccCc-hhhhcCCCCcEEecccCcCcccCCC
Q 003893          649 NKLSWKIP-YQLVELNTLAVFSVAYNNLSGKIPE  681 (788)
Q Consensus       649 N~l~~~~~-~~l~~l~~L~~L~l~~N~l~~~~~~  681 (788)
                      |+|+.... ..+..+++|+.|++++|++....+.
T Consensus       125 N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  158 (198)
T d1m9la_         125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             EECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCT
T ss_pred             chhccccccccccCCCccceeecCCCccccCccc
Confidence            99985432 4688999999999999999876554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=5e-08  Score=86.52  Aligned_cols=78  Identities=26%  Similarity=0.144  Sum_probs=47.3

Q ss_pred             CCceEECCCCcccccC--cccccccccCCeEeCCCCCCCCCCCcccCCCCCCCeeeCCCcccCccCch-------hhhcC
Q 003893          592 LLSGLDLSCNRLIGHI--PPQIGNLTKIQTLNLSHNNLAGPIPSTFSNLRNIESLDLSYNKLSWKIPY-------QLVEL  662 (788)
Q Consensus       592 ~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-------~l~~l  662 (788)
                      .|++|+|++|+++...  +..+..+++|+.|+|++|+|+...+-.+.....|+.|++++|++......       .+..+
T Consensus        66 ~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~  145 (162)
T d1koha1          66 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERF  145 (162)
T ss_dssp             TCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTS
T ss_pred             CCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHC
Confidence            4555555555554332  23456677777778888877754432333445677888888877654332       24567


Q ss_pred             CCCcEEe
Q 003893          663 NTLAVFS  669 (788)
Q Consensus       663 ~~L~~L~  669 (788)
                      ++|+.||
T Consensus       146 P~L~~LD  152 (162)
T d1koha1         146 PKLLRLD  152 (162)
T ss_dssp             TTCCEET
T ss_pred             CCCCEEC
Confidence            7888776

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=5.8e-07  Score=79.39  Aligned_cols=86  Identities=22%  Similarity=0.208  Sum_probs=65.6

Q ss_pred             CcccccccccCCeEeCCCCCCCCCC--CcccCCCCCCCeeeCCCcccCccCchhhhcCCCCcEEecccCcCcccCCCC--
Q 003893          607 IPPQIGNLTKIQTLNLSHNNLAGPI--PSTFSNLRNIESLDLSYNKLSWKIPYQLVELNTLAVFSVAYNNLSGKIPER--  682 (788)
Q Consensus       607 ~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~--  682 (788)
                      ++..+..+++|++|+|++|+|+...  +..+..+++|+.|++++|.|+...+-.+.....|+.+++++|++++.....  
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~  136 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST  136 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchh
Confidence            3445567899999999999999654  355778999999999999999655545556678999999999998765542  


Q ss_pred             -----ccccCCCCcC
Q 003893          683 -----AAQFATFNES  692 (788)
Q Consensus       683 -----~~~~~~l~~~  692 (788)
                           +..+++++.+
T Consensus       137 y~~~i~~~~P~L~~L  151 (162)
T d1koha1         137 YISAIRERFPKLLRL  151 (162)
T ss_dssp             HHHHHHTTSTTCCEE
T ss_pred             HHHHHHHHCCCCCEE
Confidence                 2345666544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.66  E-value=1.2e-05  Score=70.96  Aligned_cols=64  Identities=20%  Similarity=0.193  Sum_probs=26.5

Q ss_pred             CCCCCEEeCCCCCCCCcc-cCCCCccCCCCCCCEEEcCCCCCCCCc----cHhhhcCCCCCEEeCCCCc
Q 003893           45 MPSIQYLSLSNSSVSNNS-RTLDQGLCPLVHLQELHMADNDLRGSL----PWCLANMTSLRILDVSSNQ  108 (788)
Q Consensus        45 l~~L~~L~L~~~~l~~~~-~~l~~~l~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~  108 (788)
                      .++|++|+|++|.+.... ..+.+.+...+.|++|+|++|.+.+..    ..++...+.|++|++++|.
T Consensus        43 n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          43 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             CCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            444555555555443221 111122233444555555555544321    1222334445555554443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.55  E-value=2.2e-05  Score=69.26  Aligned_cols=39  Identities=13%  Similarity=0.245  Sum_probs=18.7

Q ss_pred             CcCCcEEEccCc-cCccc----CcccccCCCCCCEEEccCCcCC
Q 003893          489 LSQLSYLILAHN-NLEGE----VPIQLCRLNQLQLLDLSNNNLH  527 (788)
Q Consensus       489 l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~  527 (788)
                      .++|++|+|+++ .+...    +...+...+.|++|++++|.+.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccc
Confidence            455666666553 24321    1223444455555555555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.11  E-value=2.9e-05  Score=68.53  Aligned_cols=115  Identities=17%  Similarity=0.166  Sum_probs=61.9

Q ss_pred             CCCCCEEeCCCC-CCCCc-ccCCCCccCCCCCCCEEEcCCCCCCCC----ccHhhhcCCCCCEEeCCCCcCcCCCCh---
Q 003893           45 MPSIQYLSLSNS-SVSNN-SRTLDQGLCPLVHLQELHMADNDLRGS----LPWCLANMTSLRILDVSSNQLIGSISS---  115 (788)
Q Consensus        45 l~~L~~L~L~~~-~l~~~-~~~l~~~l~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~---  115 (788)
                      .+.|++|+++++ .++.. ...+-.++...++|++|++++|.+...    +...+...+.++.+++++|.+......   
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            567777777763 34322 111223445667777777777776554    223445667777777777765422111   


Q ss_pred             hhhcCCCCCCEEEcC--CCcccCcc---CccccCCCCCccEEEccCCcc
Q 003893          116 SPLIHLTSIEDLILS--DNHFQIPI---SLEPLFNHSRLKIFDAENNEI  159 (788)
Q Consensus       116 ~~l~~l~~L~~L~l~--~n~~~~~~---~~~~l~~l~~L~~L~l~~n~~  159 (788)
                      ..+...+.|+.++|+  +|.+....   -...+...++|+.|+++.+..
T Consensus        96 ~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          96 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            134556677765553  44443110   112344567777777766543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.96  E-value=0.00011  Score=64.60  Aligned_cols=115  Identities=18%  Similarity=0.139  Sum_probs=80.6

Q ss_pred             CCCCCccEEEcCCcccc-cCcc----chhHhhhcCCCCCEEeCCCCCCCCcc-cCCCCccCCCCCCCEEEcCCCCCCCCc
Q 003893           16 PHFKSLKELYMDDARIA-LNTS----FLQIIGESMPSIQYLSLSNSSVSNNS-RTLDQGLCPLVHLQELHMADNDLRGSL   89 (788)
Q Consensus        16 ~~l~~L~~L~L~~~~~~-~~~~----~~~~~~~~l~~L~~L~L~~~~l~~~~-~~l~~~l~~l~~L~~L~L~~n~i~~~~   89 (788)
                      .+.++|++|+|++  +. +...    +..++.. .++|++|++++|.++... ..+-+.+...+.++++++++|.+.+..
T Consensus        14 ~~~~~L~~L~L~~--~~~i~~~~~~~l~~al~~-n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g   90 (166)
T d1io0a_          14 NNDPDLEEVNLNN--IMNIPVPTLKACAEALKT-NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG   90 (166)
T ss_dssp             TTCTTCCEEECTT--CTTCCHHHHHHHHHHHTT-CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             hcCCCCcEEEcCC--CCCCCHHHHHHHHHHHhc-CCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchh
Confidence            4678999999997  32 3322    4455556 899999999999886542 222234567889999999999987653


Q ss_pred             ----cHhhhcCCCCCEEeCC--CCcCcCC----CChhhhcCCCCCCEEEcCCCcc
Q 003893           90 ----PWCLANMTSLRILDVS--SNQLIGS----ISSSPLIHLTSIEDLILSDNHF  134 (788)
Q Consensus        90 ----~~~~~~l~~L~~L~Ls--~n~l~~~----~~~~~l~~l~~L~~L~l~~n~~  134 (788)
                          ...+...++|+.++|+  +|.+...    +.. .+...+.|++|++..+..
T Consensus        91 ~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~-~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          91 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHH-HHHhCCCcCEEeCcCCCC
Confidence                3556788999986665  5555421    222 456789999999987754