Citrus Sinensis ID: 003913
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 787 | 2.2.26 [Sep-21-2011] | |||||||
| Q9XIL5 | 849 | Pentatricopeptide repeat- | yes | no | 0.939 | 0.870 | 0.590 | 0.0 | |
| Q5G1S8 | 1440 | Pentatricopeptide repeat- | no | no | 0.440 | 0.240 | 0.227 | 1e-14 | |
| O04491 | 607 | Putative pentatricopeptid | no | no | 0.332 | 0.431 | 0.254 | 1e-13 | |
| Q0WPZ6 | 874 | Pentatricopeptide repeat- | no | no | 0.410 | 0.369 | 0.225 | 3e-13 | |
| Q76C99 | 791 | Protein Rf1, mitochondria | N/A | no | 0.489 | 0.486 | 0.228 | 1e-11 | |
| P0C043 | 463 | Putative pentatricopeptid | no | no | 0.504 | 0.857 | 0.221 | 3e-11 | |
| Q0WMY5 | 952 | Pentatricopeptide repeat- | no | no | 0.432 | 0.357 | 0.220 | 3e-11 | |
| Q9SAD9 | 517 | Pentatricopeptide repeat- | no | no | 0.420 | 0.640 | 0.245 | 2e-10 | |
| Q8GYP6 | 860 | Pentatricopeptide repeat- | no | no | 0.341 | 0.312 | 0.216 | 2e-10 | |
| O49436 | 660 | Pentatricopeptide repeat- | no | no | 0.401 | 0.478 | 0.225 | 3e-10 |
| >sp|Q9XIL5|PP154_ARATH Pentatricopeptide repeat-containing protein At2g15820 OS=Arabidopsis thaliana GN=At2g15820 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 919 bits (2375), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/776 (59%), Positives = 597/776 (76%), Gaps = 37/776 (4%)
Query: 22 FFPHVTTVRTPRSYHFLSAPLSSATSQSTFVEQLAGEKDSSQEEKWDMFKNSDAESGSVD 81
FF H +T RTP L S+A TFVE L G +S + +E+
Sbjct: 91 FFSHSST-RTPP----LFTANSTAQRSGTFVEHLTGITESEE---------GISEANGFG 136
Query: 82 FDVGTAGSEMRHLG----EPVVEVIELEELPEQWRRAKLAWLCKELPSHKGGTLVRILNA 137
DV +A +++R++ E EV ELEELPE+WRR+KLAWLCKE+P+HK TLVR+LNA
Sbjct: 137 -DVESARNDIRNVATRRIETEFEVRELEELPEEWRRSKLAWLCKEVPTHKAVTLVRLLNA 195
Query: 138 QKKWLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFA 197
QKKW+RQED TY++VHCMRIRENETGFRVY WM QQ+WYRFDF L TKLA+Y+GKERKF
Sbjct: 196 QKKWVRQEDATYISVHCMRIRENETGFRVYRWMTQQNWYRFDFGLTTKLAEYLGKERKFT 255
Query: 198 KCRDIFDDIINQGRVPSEMTFHILIVAYLSA-PVQGCLDEACSIYNRMIQLGGYQPRPSL 256
KCR++FDD++NQGRVPSE TFHIL+VAYLS+ V+GCL+EACS+YNRMIQLGGY+PR SL
Sbjct: 256 KCREVFDDVLNQGRVPSESTFHILVVAYLSSLSVEGCLEEACSVYNRMIQLGGYKPRLSL 315
Query: 257 HNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERI 316
HNSLFRALVSK GG+ L+QAEFIFHN++T+GLE+QKDIYSGLIWLHS QD +D RI
Sbjct: 316 HNSLFRALVSKQGGILNDQLKQAEFIFHNVVTTGLEVQKDIYSGLIWLHSCQDEVDIGRI 375
Query: 317 SLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEA 376
+ L++EM++AGF+E KEV++S+LR AKEG VE+ E+TWL LL+ D GIP+ AFVYK+EA
Sbjct: 376 NSLREEMKKAGFQESKEVVVSLLRAYAKEGGVEEVERTWLELLDLDCGIPSQAFVYKIEA 435
Query: 377 YAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL 436
Y+K+G+F K++EIFREM++ +G A++ YHKIIE+LCK ++ EL E+LMKEF E+G KPL
Sbjct: 436 YSKVGDFAKAMEIFREMEKHIGGATMSGYHKIIEVLCKVQQVELVETLMKEFEESGKKPL 495
Query: 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNH 496
+PS+I + MY +LG+H++L +AF +CLEKC+P++ IY IYL+SL GN+EKA ++FN
Sbjct: 496 LPSFIEIAKMYFDLGLHEKLEMAFVQCLEKCQPSQPIYNIYLDSLTKIGNLEKAGDVFNE 555
Query: 497 MHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNR 556
M ++ TI V+ RSCN +L YL G V+AE+IYDLM +KKYEIE MEKLDY+LSL +
Sbjct: 556 MKNNGTINVSARSCNSLLKGYLDCGKQVQAERIYDLMRMKKYEIEPPLMEKLDYILSLKK 615
Query: 557 KEVKK-PVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLY 615
KEVKK P S+ LS +QRE L+GLLLGGL IESD+++K HMI+F+F ENS+ H VL++ ++
Sbjct: 616 KEVKKRPFSMKLSKDQREVLVGLLLGGLQIESDKEKKSHMIKFEFRENSQAHLVLKQNIH 675
Query: 616 DQYHEWLHPSFKVSDGNDD-IPYKYSTISHPYFCFYADKFWPKGRLVIPKLIHRWLTPRA 674
DQ+ EWLHP +S+ +D IP+++ ++ H YF FYA+ +WPKG+ IPKLIHRWL+P +
Sbjct: 676 DQFREWLHP---LSNFQEDIIPFEFYSVPHSYFGFYAEHYWPKGQPEIPKLIHRWLSPHS 732
Query: 675 LAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKTLKARSLDCRVKKKGRVFWIGFLGSNS 734
LAYW+MY G +TS GDI+L+LK S EG+ V K L+A+S++CRVKKKG+VFWIG G+NS
Sbjct: 733 LAYWYMYSGVKTSSGDIILRLKGSLEGVEKVVKALQAKSMECRVKKKGKVFWIGLQGTNS 792
Query: 735 TLFWKLIEPYVLDELKEDLLNEGSE----YRKLDTQNINFDCGSDSDEKASDYSDD 786
LFWKLIEP+VL+ LKE L SE ++ + Q+INF SD+SDD
Sbjct: 793 ALFWKLIEPHVLENLKEH-LKPASESLDNVKEAEEQSINFKSN-------SDHSDD 840
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 84/370 (22%), Positives = 172/370 (46%), Gaps = 23/370 (6%)
Query: 178 FDFALA---TKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCL 234
F FA + T + + GK++ + K + ++ GR P T++ L+ AY GC
Sbjct: 747 FHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQC---GCY 803
Query: 235 DEACSIYNRMIQLGGYQPRPSLH--NSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLE 292
+ A +I+N M++ G P P++ N L AL G L + Y+ + L G +
Sbjct: 804 ERARAIFNTMMRDG---PSPTVESINILLHALCVD-GRLEELYV-----VVEELQDMGFK 854
Query: 293 IQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAE 352
I K S L+ L ++ + + + M+ AG+ + ++ + K V DAE
Sbjct: 855 ISKS--SILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAE 912
Query: 353 KTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELL 412
+ E++ + + ++ Y I ++ K++++++ ++E Y+ +I +
Sbjct: 913 IMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMY 972
Query: 413 CKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK-CRPNR 471
C+ E LM++ G+ P + +Y +L + + ++ F E L K + +R
Sbjct: 973 CRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDR 1032
Query: 472 TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYD 531
+ Y ++ +++G+ KAE++ M + I + ++++ +Y SSG+ +AEK+
Sbjct: 1033 SFYHTMMKISRDSGSDSKAEKLL-QMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKV-- 1089
Query: 532 LMCLKKYEIE 541
L LK E+E
Sbjct: 1090 LSNLKDTEVE 1099
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May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 121/275 (44%), Gaps = 13/275 (4%)
Query: 161 ETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHI 220
+ GFR+ + M++ R D + L + + KE K +FD++ +G +P+++ F
Sbjct: 292 DEGFRL-KHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTT 350
Query: 221 LIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAE 280
LI + G +D Y +M+ G QP L+N+L K G L A
Sbjct: 351 LIHGHSR---NGEIDLMKESYQKMLS-KGLQPDIVLYNTLVNGFC-KNGDLV-----AAR 400
Query: 281 FIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLR 340
I ++ GL K Y+ LI + D E ++KEM Q G E + +++
Sbjct: 401 NIVDGMIRRGLRPDKITYTTLI--DGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVC 458
Query: 341 VCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSA 400
KEG V DAE+ +L + + M+A+ K G+ ++ +EMQ
Sbjct: 459 GMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVP 518
Query: 401 SVPAYHKIIELLCKAEETELTESLMKEFVETGMKP 435
SV Y+ ++ LCK + + + L+ + G+ P
Sbjct: 519 SVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVP 553
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140 OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/337 (22%), Positives = 151/337 (44%), Gaps = 14/337 (4%)
Query: 200 RDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNS 259
R++FD++ +G P+E TF IL+ Y A G D+ + N M G P ++N+
Sbjct: 167 RELFDEMPEKGCKPNEFTFGILVRGYCKA---GLTDKGLELLNAMESFG-VLPNKVIYNT 222
Query: 260 LFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNI-DKERISL 318
+ + + +E + + GL ++ I + + D RI
Sbjct: 223 IVSSFCREGRN------DDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFS 276
Query: 319 LKKEMQQAGFEEGKEVLLSV-LRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAY 377
+ + G + ++ L+ K G +EDA+ + + E+D+ ++ ++
Sbjct: 277 DMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGL 336
Query: 378 AKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLM 437
+ G+F+++ + ++M ++ S+ +Y+ +++ LCK ++++ G+ P
Sbjct: 337 VRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDA 396
Query: 438 PSYINLTNMYLNLGMHDRLHLAFSECL-EKCRPNRTIYGIYLESLKNAGNIEKAEEIFNH 496
+Y L + Y ++G D E + C PN I L SL G I +AEE+
Sbjct: 397 VTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRK 456
Query: 497 MHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533
M+ ++ G++T +CNII+ SG+ KA +I M
Sbjct: 457 MN-EKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGM 492
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 92/402 (22%), Positives = 165/402 (41%), Gaps = 17/402 (4%)
Query: 171 MQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPV 230
M+ D + L DY+ K + + R IFD + +G P T+ L+ Y
Sbjct: 292 MRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGY---AT 348
Query: 231 QGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG 290
+G L E + + M++ G P + +F L+ K + QA +F + G
Sbjct: 349 KGALVEMHGLLDLMVR-NGIHP----DHYVFSILICAYAKQGK--VDQAMLVFSKMRQQG 401
Query: 291 LEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVED 350
L Y +I + + E L ++M G G V S++ E
Sbjct: 402 LNPNAVTYGAVIGILCKSGRV--EDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWER 459
Query: 351 AEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLG-SASVPAYHKII 409
AE+ L +L+ + T F ++++ K G ++S ++F E+ R+G +V Y+ +I
Sbjct: 460 AEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLF-ELMVRIGVKPNVITYNTLI 518
Query: 410 ELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG-MHDRLHLAFSECLEKCR 468
C A + + L+ V G+KP +Y L N Y + M D L L
Sbjct: 519 NGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVS 578
Query: 469 PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEK 528
P+ Y I L+ L A+E++ + T + + NIIL + A +
Sbjct: 579 PDIITYNIILQGLFQTRRTAAAKELYVRITESGT-QIELSTYNIILHGLCKNKLTDDALQ 637
Query: 529 IYDLMCLKKYEIES-AWMEKLDYVLSLNRKEVKKPVSLNLSS 569
++ +CL ++E+ + +D +L + R + K + + SS
Sbjct: 638 MFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSS 679
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Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|P0C043|PP318_ARATH Putative pentatricopeptide repeat-containing protein At4g17915 OS=Arabidopsis thaliana GN=At4g17915 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 103/464 (22%), Positives = 179/464 (38%), Gaps = 67/464 (14%)
Query: 181 ALATKL----ADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDE 236
L+T+L D + K RK K + D I G P +T++ LI Y ++E
Sbjct: 10 GLSTRLLNICVDSLCKFRKLEKAESLIIDGIRLGVDPDVVTYNTLISGYCRFVG---IEE 66
Query: 237 ACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKD 296
A ++ RM + G +P + +NSL G + L ++F +L G+
Sbjct: 67 AYAVTRRM-RDAGIRPDVATYNSLI------AGAARRLMLDHVLYLFDEMLEWGIYPDLW 119
Query: 297 IYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDA----- 351
Y+ L+ + ++ +E +L K++Q AG G + +L K G +++A
Sbjct: 120 SYNTLMCCY-FKLGKHEEAFRVLYKDLQLAGLNPGPDTYNVLLDALCKCGYIDNALELFK 178
Query: 352 ---------------------------EKTWLRLLESDNGIPTPAFVYK--MEAYAKIGE 382
W+ +G A Y ++ Y K
Sbjct: 179 EMQSRFKPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKLYFKTRR 238
Query: 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYIN 442
+ L++F EM+ + AY ++ L K T+ M+E V G + + SY
Sbjct: 239 IRRGLQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVRKGRRHDIVSYNT 298
Query: 443 LTNMYLNLGMHDRLHLAFSECLEK-CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501
L N+Y G D + E + + + + I + L G +AEE F M +
Sbjct: 299 LLNLYFKDGNLDAVDDLLGEIERRGMKADEYTHTIIVNGLLRTGQTRRAEEHFVSM-GEM 357
Query: 502 TIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKL----------DYV 551
IG+N +CN ++ +G +A + ++ M +K ++ + L +
Sbjct: 358 GIGLNLVTCNCLVDGLCKAGHVDRAMRYFESMEVKDEYTYTSVVHNLCKDMRFVCASKLL 417
Query: 552 LSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHM 595
LS K +K P +S +R L GL + G C K K M
Sbjct: 418 LSCYNKGIKIP-----TSARRAVLSGLRMSG-CYGEARKAKAEM 455
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/363 (22%), Positives = 154/363 (42%), Gaps = 23/363 (6%)
Query: 177 RFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDE 236
R +F L K + G+ + R+ F+ + +G P+ + LI AY V +DE
Sbjct: 309 RTEFGLMVK---FYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAY---AVGRDMDE 362
Query: 237 ACSIYNRMIQLGGYQPRPSLHNSL--FRALVSKPGGLSKY-YLQQAEFIFHNLLTSGLEI 293
A S +M + G + SL + +V GG SK + + A++ F +
Sbjct: 363 ALSCVRKMKEEG-------IEMSLVTYSVIV---GGFSKAGHAEAADYWFDEAKRIHKTL 412
Query: 294 QKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEK 353
IY +I+ H N+ ER L +EM++ G + + +++ D +
Sbjct: 413 NASIYGKIIYAHCQTCNM--ERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLV 470
Query: 354 TWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLC 413
+ RL E + + Y K+G+ K+LE+ R M+E ++ Y +I
Sbjct: 471 VFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFV 530
Query: 414 KAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRT 472
K ++ ++ ++ V+ GMKP + Y N+ + + +G DR E + + RP
Sbjct: 531 KLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTR 590
Query: 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDL 532
+ + +G++ ++ E+F+ M + + N +++ + KA +I D
Sbjct: 591 TFMPIIHGYAKSGDMRRSLEVFDMMRRCGCV-PTVHTFNGLINGLVEKRQMEKAVEILDE 649
Query: 533 MCL 535
M L
Sbjct: 650 MTL 652
|
May play a role in the plastid ribosome biogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SAD9|PPR40_ARATH Pentatricopeptide repeat-containing protein At1g13040, mitochondrial OS=Arabidopsis thaliana GN=At1g13040 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 86/350 (24%), Positives = 147/350 (42%), Gaps = 19/350 (5%)
Query: 188 DYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQL 247
D + +E K F ++ +GR P +++ ILI A G + +A I+N MI+
Sbjct: 122 DLLCRENKVGFAVQTFFCMVQRGREPDVVSYTILINGLFRA---GKVTDAVEIWNAMIRS 178
Query: 248 GGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSY 307
G S N ALV K L E + + ++ +++ +Y+ LI
Sbjct: 179 G-----VSPDNKACAALVVGLCHARKVDLAY-EMVAEEIKSARVKLSTVVYNALISGFCK 232
Query: 308 QDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT 367
I E+ LK M + G E +L ++ AE ++ S GI
Sbjct: 233 AGRI--EKAEALKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGVMAEMVRS--GIQL 288
Query: 368 PAFVYK--MEAYAKIGEFMKSLE-IFREMQERLGSASVPAYHKIIELLCKAEETELTESL 424
A+ Y ++ + ++ K + +EM+ R G V +Y +IE C+A T L
Sbjct: 289 DAYSYNQLLKRHCRVSHPDKCYNFMVKEMEPR-GFCDVVSYSTLIETFCRASNTRKAYRL 347
Query: 425 MKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYLESLKN 483
+E + GM + +Y +L +L G + E P+R Y L+ L
Sbjct: 348 FEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCK 407
Query: 484 AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533
+GN++KA +FN M + I + S N ++S SG +A K+++ M
Sbjct: 408 SGNVDKAYGVFNDM-IEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDM 456
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/314 (21%), Positives = 129/314 (41%), Gaps = 45/314 (14%)
Query: 160 NETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFH 219
N GF + W+ +Q ++ D T + +G+ ++F + D+++ G P+ +T++
Sbjct: 346 NALGF--FYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYN 403
Query: 220 ILIVAYLSAPV-------------QGC-------------------LDEACSIYNRMIQL 247
LI +Y A GC LD A +Y RM Q
Sbjct: 404 RLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRM-QA 462
Query: 248 GGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSY 307
GG P ++ + L K G +L A +F ++ G Y+ ++ LH+
Sbjct: 463 GGLSPDTFTYSVIINCL-GKAG-----HLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAK 516
Query: 308 QDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT 367
N + L ++MQ AGFE K V+ V G +E+AE + ++ N IP
Sbjct: 517 ARNY--QNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTE-MQQKNWIPD 573
Query: 368 -PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMK 426
P + ++ + K G K+ + ++ M +VP + ++ + + L++
Sbjct: 574 EPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQ 633
Query: 427 EFVETGMKPLMPSY 440
+ G++P + +Y
Sbjct: 634 NMLALGLRPSLQTY 647
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 76/337 (22%), Positives = 151/337 (44%), Gaps = 21/337 (6%)
Query: 186 LADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMI 245
L D + K+ + + D++ +G VP+E+T++ LI ++G LD+A S+ RM+
Sbjct: 263 LIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLC---LKGKLDKAVSLLERMV 319
Query: 246 QLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLH 305
P + +L LV + A + ++ G + + IYS LI
Sbjct: 320 S-SKCIPNDVTYGTLINGLVKQRRA------TDAVRLLSSMEERGYHLNQHIYSVLIS-G 371
Query: 306 SYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGI 365
+++ +E +SL +K M + G + V ++ +EG +A++ R++ S G
Sbjct: 372 LFKEGKAEEAMSLWRK-MAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIAS--GC 428
Query: 366 PTPAFVYK--MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTES 423
A+ Y M+ + K G +++++++EM + S + Y +I+ LC +
Sbjct: 429 LPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMM 488
Query: 424 LMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL----EKCRPNRTIYGIYLE 479
+ + + G+KP +Y ++ +G D + E L K +P+ Y I L+
Sbjct: 489 VWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLD 548
Query: 480 SLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA 516
L +I +A ++ N M D+ + +CN L+
Sbjct: 549 GLCMQKDISRAVDLLNSML-DRGCDPDVITCNTFLNT 584
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 787 | ||||||
| 225428729 | 823 | PREDICTED: pentatricopeptide repeat-cont | 0.972 | 0.929 | 0.689 | 0.0 | |
| 297741318 | 790 | unnamed protein product [Vitis vinifera] | 0.972 | 0.968 | 0.689 | 0.0 | |
| 255561657 | 835 | pentatricopeptide repeat-containing prot | 0.961 | 0.906 | 0.678 | 0.0 | |
| 356519449 | 763 | PREDICTED: pentatricopeptide repeat-cont | 0.875 | 0.903 | 0.656 | 0.0 | |
| 449468730 | 797 | PREDICTED: pentatricopeptide repeat-cont | 0.950 | 0.938 | 0.617 | 0.0 | |
| 449528187 | 747 | PREDICTED: pentatricopeptide repeat-cont | 0.919 | 0.969 | 0.636 | 0.0 | |
| 356577031 | 737 | PREDICTED: pentatricopeptide repeat-cont | 0.858 | 0.917 | 0.666 | 0.0 | |
| 297836204 | 841 | hypothetical protein ARALYDRAFT_343169 [ | 0.937 | 0.877 | 0.596 | 0.0 | |
| 240254458 | 849 | pentatricopeptide repeat-containing prot | 0.939 | 0.870 | 0.590 | 0.0 | |
| 357436027 | 775 | Pentatricopeptide repeat-containing prot | 0.885 | 0.899 | 0.597 | 0.0 |
| >gi|225428729|ref|XP_002281969.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15820-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1097 bits (2836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/779 (68%), Positives = 632/779 (81%), Gaps = 14/779 (1%)
Query: 9 LPSITLSLQRHVSFFPHVTTVRTPRSYHFLSAPLSSATSQSTFVEQLAGEKDSSQEEKWD 68
L S++LS FFP + T S F PL A S+FVEQ+ GE + + E +
Sbjct: 57 LCSLSLSNYSKSFFFP-LPTTNIRHSSLFRRPPL--AKPLSSFVEQVVGESERDENEGF- 112
Query: 69 MFKNSDAESGSVDFDVGTAGSEMRHLGEPVVEVIELEELPEQWRRAKLAWLCKELPSHKG 128
+ E S DF V +++RHL P +EV ELEELPEQWRR+KLAWLCKELP+HK
Sbjct: 113 ---SRGGEGESFDFGVAFGSTDLRHLSSPSLEVKELEELPEQWRRSKLAWLCKELPAHKP 169
Query: 129 GTLVRILNAQKKWLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLAD 188
TL+RILNAQKKW+RQED TY+AVHCMRIRENETGFRVY+WMMQQHW++FDFALATKLAD
Sbjct: 170 ATLIRILNAQKKWVRQEDATYIAVHCMRIRENETGFRVYKWMMQQHWFQFDFALATKLAD 229
Query: 189 YMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLG 248
YMGKERKF+KCR+IFDDII QG VP E TFHILI+AYLSA VQGCLDEAC IYNRMIQLG
Sbjct: 230 YMGKERKFSKCREIFDDIIKQGLVPCESTFHILIIAYLSASVQGCLDEACGIYNRMIQLG 289
Query: 249 GYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQ 308
GYQPR SLHNSLFRALV +PGG SKY+L+QAEFIFHNL+T G EI KD+Y GLIWLHSYQ
Sbjct: 290 GYQPRLSLHNSLFRALVGQPGGSSKYFLKQAEFIFHNLVTFGFEIHKDVYGGLIWLHSYQ 349
Query: 309 DNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTP 368
D ID+ERI+ L++EMQ AG EE ++VLLS+LR C+KEGDVE+AEKTWL+LL SD IP+
Sbjct: 350 DTIDRERIASLREEMQLAGIEESRDVLLSILRACSKEGDVEEAEKTWLKLLHSDCAIPSQ 409
Query: 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEF 428
FVY+ME YAK+GE MKSLEIFREMQE+LGS SV AYHKIIE+L KA+E EL ESLM EF
Sbjct: 410 GFVYRMEVYAKVGEPMKSLEIFREMQEQLGSTSVVAYHKIIEVLSKAQEIELVESLMTEF 469
Query: 429 VETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIE 488
+ +GMKPLMPSYI+L NMY NL +HD+L AF ECLEKCRPNR IY IY++SL GN++
Sbjct: 470 INSGMKPLMPSYIDLMNMYFNLSLHDKLEAAFYECLEKCRPNRAIYNIYMDSLVQIGNLD 529
Query: 489 KAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKL 548
KAEEIFN M+S+ IGVNT+SCN ILS YLS GD++KAEKIYDLMC KKY I++ MEKL
Sbjct: 530 KAEEIFNQMYSNGAIGVNTKSCNTILSGYLSCGDYLKAEKIYDLMCQKKYAIDAPLMEKL 589
Query: 549 DYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHS 608
DYVLSL+RK VK+PVSL LS EQRE LIGLLLGGL +ESDE+RK H+I F+FNENS HS
Sbjct: 590 DYVLSLSRKVVKRPVSLKLSKEQREILIGLLLGGLQMESDEERKNHVIYFEFNENSGAHS 649
Query: 609 VLRRYLYDQYHEWLHPSFKVSDGNDDIPYKYSTISHPYFCFYADKFWPKGRLVIPKLIHR 668
VLRR++++QYHEWL+ S K+SD NDD+PYK+STISH YF FYAD+FWP+GR +IPKLIHR
Sbjct: 650 VLRRHIHEQYHEWLNSSSKLSDDNDDVPYKFSTISHSYFGFYADQFWPRGRPMIPKLIHR 709
Query: 669 WLTPRALAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKTLKARSLDCRVKKKGRVFWIG 728
WL+PR LAYW+MYGGHRTS GDILLKLK S EG+ V +TLKA+S+DCRVK+KG VFWIG
Sbjct: 710 WLSPRVLAYWYMYGGHRTSSGDILLKLKGSREGVEKVVRTLKAQSMDCRVKRKGTVFWIG 769
Query: 729 FLGSNSTLFWKLIEPYVLDELKEDLLNEGSEYRKLDTQNINFDCGSDSDEKASDYSDDD 787
LGSNST FWKLIEPY+LD++K D + G + I+F GSD+DE A+DYSD++
Sbjct: 770 LLGSNSTWFWKLIEPYILDDVK-DFVKAGCQ------NTISFGSGSDTDENAADYSDNE 821
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297741318|emb|CBI32449.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1095 bits (2832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/779 (68%), Positives = 632/779 (81%), Gaps = 14/779 (1%)
Query: 9 LPSITLSLQRHVSFFPHVTTVRTPRSYHFLSAPLSSATSQSTFVEQLAGEKDSSQEEKWD 68
L S++LS FFP + T S F PL A S+FVEQ+ GE + + E +
Sbjct: 24 LCSLSLSNYSKSFFFP-LPTTNIRHSSLFRRPPL--AKPLSSFVEQVVGESERDENEGF- 79
Query: 69 MFKNSDAESGSVDFDVGTAGSEMRHLGEPVVEVIELEELPEQWRRAKLAWLCKELPSHKG 128
+ E S DF V +++RHL P +EV ELEELPEQWRR+KLAWLCKELP+HK
Sbjct: 80 ---SRGGEGESFDFGVAFGSTDLRHLSSPSLEVKELEELPEQWRRSKLAWLCKELPAHKP 136
Query: 129 GTLVRILNAQKKWLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLAD 188
TL+RILNAQKKW+RQED TY+AVHCMRIRENETGFRVY+WMMQQHW++FDFALATKLAD
Sbjct: 137 ATLIRILNAQKKWVRQEDATYIAVHCMRIRENETGFRVYKWMMQQHWFQFDFALATKLAD 196
Query: 189 YMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLG 248
YMGKERKF+KCR+IFDDII QG VP E TFHILI+AYLSA VQGCLDEAC IYNRMIQLG
Sbjct: 197 YMGKERKFSKCREIFDDIIKQGLVPCESTFHILIIAYLSASVQGCLDEACGIYNRMIQLG 256
Query: 249 GYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQ 308
GYQPR SLHNSLFRALV +PGG SKY+L+QAEFIFHNL+T G EI KD+Y GLIWLHSYQ
Sbjct: 257 GYQPRLSLHNSLFRALVGQPGGSSKYFLKQAEFIFHNLVTFGFEIHKDVYGGLIWLHSYQ 316
Query: 309 DNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTP 368
D ID+ERI+ L++EMQ AG EE ++VLLS+LR C+KEGDVE+AEKTWL+LL SD IP+
Sbjct: 317 DTIDRERIASLREEMQLAGIEESRDVLLSILRACSKEGDVEEAEKTWLKLLHSDCAIPSQ 376
Query: 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEF 428
FVY+ME YAK+GE MKSLEIFREMQE+LGS SV AYHKIIE+L KA+E EL ESLM EF
Sbjct: 377 GFVYRMEVYAKVGEPMKSLEIFREMQEQLGSTSVVAYHKIIEVLSKAQEIELVESLMTEF 436
Query: 429 VETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIE 488
+ +GMKPLMPSYI+L NMY NL +HD+L AF ECLEKCRPNR IY IY++SL GN++
Sbjct: 437 INSGMKPLMPSYIDLMNMYFNLSLHDKLEAAFYECLEKCRPNRAIYNIYMDSLVQIGNLD 496
Query: 489 KAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKL 548
KAEEIFN M+S+ IGVNT+SCN ILS YLS GD++KAEKIYDLMC KKY I++ MEKL
Sbjct: 497 KAEEIFNQMYSNGAIGVNTKSCNTILSGYLSCGDYLKAEKIYDLMCQKKYAIDAPLMEKL 556
Query: 549 DYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHS 608
DYVLSL+RK VK+PVSL LS EQRE LIGLLLGGL +ESDE+RK H+I F+FNENS HS
Sbjct: 557 DYVLSLSRKVVKRPVSLKLSKEQREILIGLLLGGLQMESDEERKNHVIYFEFNENSGAHS 616
Query: 609 VLRRYLYDQYHEWLHPSFKVSDGNDDIPYKYSTISHPYFCFYADKFWPKGRLVIPKLIHR 668
VLRR++++QYHEWL+ S K+SD NDD+PYK+STISH YF FYAD+FWP+GR +IPKLIHR
Sbjct: 617 VLRRHIHEQYHEWLNSSSKLSDDNDDVPYKFSTISHSYFGFYADQFWPRGRPMIPKLIHR 676
Query: 669 WLTPRALAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKTLKARSLDCRVKKKGRVFWIG 728
WL+PR LAYW+MYGGHRTS GDILLKLK S EG+ V +TLKA+S+DCRVK+KG VFWIG
Sbjct: 677 WLSPRVLAYWYMYGGHRTSSGDILLKLKGSREGVEKVVRTLKAQSMDCRVKRKGTVFWIG 736
Query: 729 FLGSNSTLFWKLIEPYVLDELKEDLLNEGSEYRKLDTQNINFDCGSDSDEKASDYSDDD 787
LGSNST FWKLIEPY+LD++K D + G + I+F GSD+DE A+DYSD++
Sbjct: 737 LLGSNSTWFWKLIEPYILDDVK-DFVKAGCQ------NTISFGSGSDTDENAADYSDNE 788
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255561657|ref|XP_002521838.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223538876|gb|EEF40474.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1091 bits (2822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/766 (67%), Positives = 636/766 (83%), Gaps = 9/766 (1%)
Query: 24 PHVTTVRTPRSYHFLSAPLSSATSQSTFVEQLAGEK--DSSQEEKWDMFKNSDAESGSVD 81
P + T+ + H ++ + +S +T EQLA E S EEKWD+ +D E
Sbjct: 73 PFLRTLHISPNKHKKTSSFCTLSSFNTSAEQLACESLSPSKNEEKWDISSYNDNEHEIFK 132
Query: 82 FDVGT-AGSEMRHLGEPVVEVIELEELPEQWRRAKLAWLCKELPSHKGGTLVRILNAQKK 140
FD + AG +++HL P +EV EL+ELPEQWRRA+LAWLCK+LP+HK GTLV+ILNAQKK
Sbjct: 133 FDGDSGAGVDLKHLDTPALEVKELQELPEQWRRARLAWLCKQLPAHKAGTLVKILNAQKK 192
Query: 141 WLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCR 200
W+RQED TY+AVHCMRIRENE GFRVY+WMMQQHWYRFDF LATKLADYMGKERKFAKCR
Sbjct: 193 WMRQEDATYIAVHCMRIRENEAGFRVYKWMMQQHWYRFDFGLATKLADYMGKERKFAKCR 252
Query: 201 DIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSL 260
+IFDDIINQGRVPSE TFHILI+AYLSAPVQGCL+EAC+IYNRMIQLGGYQPR SLHNSL
Sbjct: 253 EIFDDIINQGRVPSESTFHILIIAYLSAPVQGCLEEACTIYNRMIQLGGYQPRLSLHNSL 312
Query: 261 FRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLK 320
FRALVSKPGG +K+YL+QAEFI+HNL+TSGLEIQ DIY GLIWLHSYQDNIDK RI+ ++
Sbjct: 313 FRALVSKPGGFAKHYLKQAEFIYHNLVTSGLEIQNDIYGGLIWLHSYQDNIDKVRIASIR 372
Query: 321 KEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKI 380
+EM+QAG EG+E+LLS++R C+KEGDVE+AE+TWL+LL+ D G+PT AFVY+ME +AK+
Sbjct: 373 EEMKQAGIMEGREILLSIMRACSKEGDVEEAERTWLKLLQVDGGLPTQAFVYRMEVFAKL 432
Query: 381 GEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSY 440
GE MKSLE FREMQE LGS+S+ AYHKIIE++ +A+E EL ESLM+EF+++G+KPLMPS+
Sbjct: 433 GEHMKSLETFREMQELLGSSSIAAYHKIIEVVSQAQEVELAESLMQEFIKSGLKPLMPSF 492
Query: 441 INLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500
+L NMYLNL +H++L F CLE CRPNR IY +YL+SL GN++KAEE FN+M S+
Sbjct: 493 TDLMNMYLNLNLHEKLESTFFACLENCRPNRNIYNVYLDSLVKVGNLDKAEEAFNNMCSN 552
Query: 501 QTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVK 560
+ +GVN RSCN IL YLSSGD+VKAEKIYDLMC KKY+IE + MEKLDYVLSL+RK VK
Sbjct: 553 EAVGVNIRSCNTILRGYLSSGDYVKAEKIYDLMCQKKYDIEPSLMEKLDYVLSLSRKVVK 612
Query: 561 KPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHE 620
KP+SL LS +QRE L+GLLLGGL +ESD+ RK+HMIRF+FNENS H++LRR+LYD+YHE
Sbjct: 613 KPLSLKLSKDQREILVGLLLGGLRVESDDNRKKHMIRFEFNENSSTHAILRRHLYDKYHE 672
Query: 621 WLHPSFKVSDGNDDIPYKYSTISHPYFCFYADKFWPKGRLVIPKLIHRWLTPRALAYWFM 680
WLHPS K+SDG+D Y++STISH YF FYA++FWPKG+ +IPKLIHRWL+P+ LA+W+M
Sbjct: 673 WLHPSCKLSDGSDGASYRFSTISHSYFSFYAEQFWPKGQPMIPKLIHRWLSPQVLAFWYM 732
Query: 681 YGGHRTSVGDILLKLKVSSEGIALVFKTLKARSLDCRVKKKGRVFWIGFLGSNSTLFWKL 740
Y GHRTS GDILLKLK S EG+ VFKTLK++SL+C+VK+KGRVFWIGFLG++S FWKL
Sbjct: 733 YAGHRTSSGDILLKLKGSREGVEKVFKTLKSKSLNCKVKRKGRVFWIGFLGNDSVWFWKL 792
Query: 741 IEPYVLDELKEDLLNEGSEYRKLDTQNINFDCGSDSDEKASDYSDD 786
+EPY+LD+LK L G + + +NINFD GSD S+YSDD
Sbjct: 793 VEPYILDDLKL-FLKAGDQTLEYSAENINFDSGSD-----SEYSDD 832
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356519449|ref|XP_003528385.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15820-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 972 bits (2512), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/696 (65%), Positives = 570/696 (81%), Gaps = 7/696 (1%)
Query: 86 TAGSEMRHLGEPVVEVIELEELPEQWRRAKLAWLCKELPSHKGGTLVRILNAQKKWLRQE 145
+A +E R L P VEV EL +PE+WRRA++AWLCKELP+HK GTLVRILNAQKKW+ QE
Sbjct: 72 SAEAEARGLRGPEVEVGELSAVPEEWRRARVAWLCKELPAHKAGTLVRILNAQKKWMWQE 131
Query: 146 DGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDD 205
D TY+ VHC+R+RENET F+VY+WMMQ++WYRFDFALATKLADYMGKE KF+KCR++FDD
Sbjct: 132 DATYVLVHCLRVRENETAFKVYKWMMQRNWYRFDFALATKLADYMGKEGKFSKCREVFDD 191
Query: 206 IINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALV 265
IINQGRVPSE TFHIL+VAYLSAPVQGCLDEACSIYNRMIQLGGYQPR S+HNS+F+ALV
Sbjct: 192 IINQGRVPSESTFHILVVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRLSIHNSVFKALV 251
Query: 266 SKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQ 325
S PG LSK YL+QAEFI+H+L+T+GL++ K+IY GLIWLHSYQD+IDKERI+ L++ M +
Sbjct: 252 SNPGILSKNYLKQAEFIYHHLVTTGLDVHKEIYGGLIWLHSYQDSIDKERIAELREAMLR 311
Query: 326 AGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMK 385
AGFEE +EVLLS+LR CA+EG+VE+AEK+W++LLE +N P AFVYKME Y+K+G MK
Sbjct: 312 AGFEEDREVLLSILRACAREGEVEEAEKSWVKLLEFENDPPALAFVYKMEVYSKVGMPMK 371
Query: 386 SLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTN 445
SL+IFREMQ +LG V AY++IIE+LCKA+E+EL ES+M +FV++ +KPL PSY+ L +
Sbjct: 372 SLDIFREMQSKLGRTDVAAYNQIIEILCKAQESELAESIMADFVKSDLKPLTPSYVYLLS 431
Query: 446 MYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGV 505
MY NL +HD+L +F +CLEKCRPN IY IYL SL GNI+KAE+IFN M+ D TIGV
Sbjct: 432 MYFNLELHDKLEESFYKCLEKCRPNCAIYSIYLNSLVKIGNIDKAEDIFNQMNHDATIGV 491
Query: 506 NTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSL 565
N RSCNIILS YLSSG +KAEK+YD MCLKKYEIES+ ME+LDY+LSL RK VK+P+S+
Sbjct: 492 NARSCNIILSGYLSSGKHLKAEKVYDFMCLKKYEIESSLMEQLDYILSLKRKVVKRPISM 551
Query: 566 NLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHEWLHPS 625
LS EQRE +IGLLLGGL I+SD++R+ H+IRF F+ NS H VL+ ++Y + EWLHP+
Sbjct: 552 KLSKEQREIMIGLLLGGLRIDSDDRRRNHIIRFDFDGNSGSHYVLKSHIYHLFFEWLHPT 611
Query: 626 FKVSDGNDDIPYKYSTISHPYFCFYADKFWPKGRLVIPKLIHRWLTPRALAYWFMYGGHR 685
K D +++IP K+ TI+ +F FYAD+FW KG IPKL+HRWL+P LAYW+MYGGHR
Sbjct: 612 CKPGDNSENIPDKFCTIASSHFGFYADQFWSKGEPSIPKLVHRWLSPCVLAYWYMYGGHR 671
Query: 686 TSVGDILLKLKVSSEGIALVFKTLKARSLDCRVKKKGRVFWIGFLGSNSTLFWKLIEPYV 745
S GDILLK+K S EG+ + + K S+DC+VK+KGRVFWIG LGSNST FWKL+EPYV
Sbjct: 672 NSSGDILLKVKGSREGVENIVRKFKGMSMDCKVKRKGRVFWIGILGSNSTWFWKLVEPYV 731
Query: 746 LDELKEDLLNEGSEYRKLD---TQNINFDCGSDSDE 778
++ +D G E ++ D T++INF+ SDSDE
Sbjct: 732 IE--NKDFAEAGDETKEQDAKETEDINFN--SDSDE 763
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449468730|ref|XP_004152074.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15820-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 964 bits (2493), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/771 (61%), Positives = 601/771 (77%), Gaps = 23/771 (2%)
Query: 21 SFFPHVTTVRTPRSYHFLSAPLSSATSQSTFVEQLAGEKDSSQEEKWDMFKNSDAESGSV 80
+ F +V+ P+ P A + +FV+QL + DS E + + +
Sbjct: 41 TLFLPAYSVKVPQ------LPRIRAFASGSFVKQLVYDHDSPSESEEHLSSSFSNGGDGF 94
Query: 81 DFDVGTAGSEMRHLGEPVVEVIELEELPEQWRRAKLAWLCKELPSHKGGTLVRILNAQKK 140
F+ G A +++HLG PV+EV EL+ELPEQWRR+K+AWLCKELP+ K GT++R+LNAQKK
Sbjct: 95 HFENGFASVDLKHLGTPVLEVKELDELPEQWRRSKVAWLCKELPAQKPGTVIRLLNAQKK 154
Query: 141 WLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCR 200
W+ Q+D TYL VHC+RIRENET FRVY+WMMQQHWYRFD+AL+TKLADYMGKERKF+KCR
Sbjct: 155 WMGQDDATYLTVHCLRIRENETAFRVYKWMMQQHWYRFDYALSTKLADYMGKERKFSKCR 214
Query: 201 DIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSL 260
++FDDIINQG VPSE TFHILIVAYLSAPVQGC++EA +IYNRMIQLGGYQPR SLH+SL
Sbjct: 215 EVFDDIINQGCVPSESTFHILIVAYLSAPVQGCIEEASTIYNRMIQLGGYQPRLSLHSSL 274
Query: 261 FRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLK 320
FRALVSKPG LSK++L+QAEFI+HNL+TSGLE+ KD+Y GLIWLHSYQD ID+ERI L+
Sbjct: 275 FRALVSKPGDLSKHHLKQAEFIYHNLVTSGLELHKDMYGGLIWLHSYQDTIDRERIVSLR 334
Query: 321 KEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKI 380
KEMQQAG +E +EVLLS+LR +K GDV +AEK W L D +P+ AFVYKME YAK+
Sbjct: 335 KEMQQAGIKEEREVLLSILRASSKMGDVMEAEKLWQELKYLDGNMPSQAFVYKMEVYAKM 394
Query: 381 GEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSY 440
G+ MK+LEIFREM E+L S + AY II +LCK + EL ES+M F+E+ +KPL P+Y
Sbjct: 395 GKPMKALEIFREM-EQLNSTNAAAYQTIIGILCKFQVIELAESIMAGFIESNLKPLTPAY 453
Query: 441 INLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500
++L NM+ NL + D+L L FS+CLEKC+PNRTIY IYL+SL GN+++AEEIF+ M ++
Sbjct: 454 VDLMNMFFNLNLDDKLELTFSQCLEKCKPNRTIYSIYLDSLVKVGNLDRAEEIFSQMETN 513
Query: 501 QTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVK 560
IG+N RSCNIIL YL G+++KAEKIYDLMC K+Y+I+ MEKL+Y+LSL+RKEVK
Sbjct: 514 GEIGINARSCNIILRGYLLCGNYMKAEKIYDLMCQKRYDIDPPLMEKLEYILSLSRKEVK 573
Query: 561 KPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHE 620
KP+SL LS EQRE L+GLLLGGL IESD++RK H I+F+F+ N + HSVLRR++Y+QYH+
Sbjct: 574 KPMSLKLSKEQREILVGLLLGGLEIESDDERKNHRIQFEFHRNCKTHSVLRRHIYEQYHK 633
Query: 621 WLHPSFKVSDGNDDIPYKYSTISHPYFCFYADKFWPKGRLVIPKLIHRWLTPRALAYWFM 680
WLH + K++DG+ DIPYK+ T+SH YF FYAD+FWP+GR IP LIHRWL+PR LAYW+M
Sbjct: 634 WLHSASKLTDGDVDIPYKFCTVSHSYFGFYADQFWPRGRRAIPNLIHRWLSPRVLAYWYM 693
Query: 681 YGGHRTSVGDILLKLKVSSEGIALVFKTLKARSLDCRVKKKGRVFWIGFLGSNSTLFWKL 740
YGG RTS GDILLKLK S EG+ + K+L+ +S+ C+VK+KG ++WIG LGSN+T FWKL
Sbjct: 694 YGGCRTSSGDILLKLKGSHEGVEKIVKSLREKSIHCKVKRKGNMYWIGLLGSNATWFWKL 753
Query: 741 IEPYVLDELKE----DLLN-----EGSEYRKLDTQNINFDCGSDSDEKASD 782
IEP++LD LKE D LN GSE NINFD SDS E+ S+
Sbjct: 754 IEPFILDYLKESTQADSLNLVGVLNGSE-------NINFDSESDSVEETSN 797
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449528187|ref|XP_004171087.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15820-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 961 bits (2485), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/741 (63%), Positives = 590/741 (79%), Gaps = 17/741 (2%)
Query: 51 FVEQLAGEKDSSQEEKWDMFKNSDAESGSVDFDVGTAGSEMRHLGEPVVEVIELEELPEQ 110
FV+QL + DS E + + + F+ G A +++HLG PV+EV EL+ELPEQ
Sbjct: 15 FVKQLVYDHDSPSESEEHLSSSFSNGGDGFHFENGFASVDLKHLGTPVLEVKELDELPEQ 74
Query: 111 WRRAKLAWLCKELPSHKGGTLVRILNAQKKWLRQEDGTYLAVHCMRIRENETGFRVYEWM 170
WRR+K+AWLCKELP+ K GT++R+LNAQKKW+ Q+D TYL VHC+RIRENET FRVY+WM
Sbjct: 75 WRRSKVAWLCKELPAQKPGTVIRLLNAQKKWMGQDDATYLTVHCLRIRENETAFRVYKWM 134
Query: 171 MQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPV 230
MQQHWYRFD+AL+TKLADYMGKERKF+KCR++FDDIINQG VPSE TFHILIVAYLSAPV
Sbjct: 135 MQQHWYRFDYALSTKLADYMGKERKFSKCREVFDDIINQGCVPSESTFHILIVAYLSAPV 194
Query: 231 QGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG 290
QGC++EA +IYNRMIQLGGYQPR SLH+SLFRALVSKPG LSK++L+QAEFI+HNL+TSG
Sbjct: 195 QGCVEEASTIYNRMIQLGGYQPRLSLHSSLFRALVSKPGDLSKHHLKQAEFIYHNLVTSG 254
Query: 291 LEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVED 350
LE+ KDIY GLIWLHSYQD ID+ERI L+KEMQQAG +E +EVLLS+LR +K GDV +
Sbjct: 255 LELHKDIYGGLIWLHSYQDTIDRERIVSLRKEMQQAGIKEEREVLLSILRASSKMGDVME 314
Query: 351 AEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410
AEK W L D +P+ AFVYKME YAK+G+ MK+LEIFREM E+L S + AY II
Sbjct: 315 AEKLWQELKYLDGNMPSQAFVYKMEVYAKMGKPMKALEIFREM-EQLNSTNAAAYQTIIG 373
Query: 411 LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN 470
+LCK + EL ES+M F+E+ +KPL P+Y++L NM+ NL + D+L L FS+CLEKC+PN
Sbjct: 374 ILCKFQVIELAESIMAGFIESNLKPLTPAYVDLMNMFFNLNLDDKLELTFSQCLEKCKPN 433
Query: 471 RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIY 530
RTIY IYL+SL GN+++AEEIF+ M ++ IG+N RSCNIIL YL G+++KAEKIY
Sbjct: 434 RTIYSIYLDSLVKVGNLDRAEEIFSQMETNGEIGINARSCNIILRGYLLCGNYMKAEKIY 493
Query: 531 DLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEK 590
DLMC K+Y+I+ MEKL+Y+LSL+RKEVKKP+SL LS EQRE L+GLLLGGL IESDE+
Sbjct: 494 DLMCQKRYDIDPPLMEKLEYILSLSRKEVKKPMSLKLSKEQREILVGLLLGGLEIESDEE 553
Query: 591 RKRHMIRFQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPYKYSTISHPYFCFY 650
RK H I+F+F+ N + HSVLRR++Y+QYH+WLH + K++DG+ DIPYK+ T+SH YF FY
Sbjct: 554 RKNHRIQFEFHRNCKTHSVLRRHIYEQYHKWLHSASKLTDGDVDIPYKFCTVSHSYFGFY 613
Query: 651 ADKFWPKGRLVIPKLIHRWLTPRALAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKTLK 710
AD+FWP+GR IP LIHRWL+PR LAYW+MYGG RTS GDILLKLK S EG+ + K+L+
Sbjct: 614 ADQFWPRGRRAIPNLIHRWLSPRVLAYWYMYGGCRTSSGDILLKLKGSHEGVEKIVKSLR 673
Query: 711 ARSLDCRVKKKGRVFWIGFLGSNSTLFWKLIEPYVLDELKE----DLLN-----EGSEYR 761
+S+ C+VK+KG ++WIG LG+N+T FWKLIEP++LD LKE D LN GSE
Sbjct: 674 EKSIHCKVKRKGNMYWIGLLGTNATWFWKLIEPFILDYLKESTQADSLNLVGVLNGSE-- 731
Query: 762 KLDTQNINFDCGSDSDEKASD 782
NINFD SDS E+ S+
Sbjct: 732 -----NINFDSESDSVEETSN 747
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356577031|ref|XP_003556633.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15820-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 955 bits (2469), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/683 (66%), Positives = 570/683 (83%), Gaps = 7/683 (1%)
Query: 99 VEVIELEELPEQWRRAKLAWLCKELPSHKGGTLVRILNAQKKWLRQEDGTYLAVHCMRIR 158
+EV+EL +PE+WRRA++AWLCKELP+HK GTLVRILNAQKKW+RQED TY+ VHC+R+R
Sbjct: 59 MEVLELSAVPEEWRRARVAWLCKELPAHKAGTLVRILNAQKKWMRQEDATYVLVHCLRVR 118
Query: 159 ENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTF 218
ENET F+VY+WMMQ++WYRFDFALATKLADYMGKERKF+KCR++FDDIINQGRVPSE TF
Sbjct: 119 ENETAFKVYKWMMQRNWYRFDFALATKLADYMGKERKFSKCREVFDDIINQGRVPSESTF 178
Query: 219 HILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQ 278
HIL+VAYLSAPVQGCLDEACSIYNRMIQLGGYQPR SLH+SLF+ALVS PG LSK YL+Q
Sbjct: 179 HILVVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRLSLHSSLFKALVSNPGILSKNYLKQ 238
Query: 279 AEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSV 338
AEFI+H+L+T+GL++ K+IY GLIWLHSYQD+IDKERI+ L++ M +AGFEE +EVLLS+
Sbjct: 239 AEFIYHHLVTTGLDVHKEIYGGLIWLHSYQDSIDKERIAELREAMLRAGFEEDREVLLSI 298
Query: 339 LRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLG 398
LR CA+EG+V++AEKTW++LL+ ++ P AFVYKME Y+K+G MKSL+IFREMQ +LG
Sbjct: 299 LRACAREGEVDEAEKTWVKLLKFESEPPALAFVYKMEVYSKVGMPMKSLDIFREMQSKLG 358
Query: 399 SASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHL 458
V AY++IIE+LCKA+E+EL ES+M++FV +G+KP+ PSY+ L +MY L +HD+L
Sbjct: 359 RTDVAAYNQIIEILCKAQESELAESIMEDFVRSGLKPVTPSYVYLLSMYFTLELHDKLEE 418
Query: 459 AFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYL 518
AF +CLEKCRPN T+Y IYL SL GNI+KAE+IFN M+ D TIGVN RSCNIILS YL
Sbjct: 419 AFYQCLEKCRPNCTLYSIYLNSLVKIGNIDKAEDIFNQMNRDATIGVNARSCNIILSGYL 478
Query: 519 SSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGL 578
SSG+ +KAEK+YD MCLKKYEI+S MEKLDY+LSL RK VK+P+SL LS EQRE LIGL
Sbjct: 479 SSGNHLKAEKVYDFMCLKKYEIKSPLMEKLDYILSLKRKVVKRPISLKLSKEQREILIGL 538
Query: 579 LLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPYK 638
LLGGL I+SD++R+ H+IRF F+ NS H VL+ ++Y Q++EWLHP+ K D +++IP K
Sbjct: 539 LLGGLQIDSDDQRRNHIIRFDFDRNSGSHYVLKSHIYHQFYEWLHPTCKPGDNSENIPDK 598
Query: 639 YSTISHPYFCFYADKFWPKGRLVIPKLIHRWLTPRALAYWFMYGGHRTSVGDILLKLKVS 698
+ TI+ +F FYAD+FW KG IPKL+HRWL+P LAYW+MYGGHR S GDILLK+K S
Sbjct: 599 FCTIASSHFGFYADQFWSKGEPTIPKLVHRWLSPCVLAYWYMYGGHRNSSGDILLKIKGS 658
Query: 699 SEGIALVFKTLKARSLDCRVKKKGRVFWIGFLGSNSTLFWKLIEPYVLDELKEDLLNEGS 758
EG+ + + KA S+DC+VK+KGRVFWIG LGSNST FWKL+EPY+ ++ E+ G
Sbjct: 659 REGVENIVRKFKAMSMDCKVKRKGRVFWIGILGSNSTWFWKLVEPYIKED--EEFSEAGD 716
Query: 759 EYRKLD---TQNINFDCGSDSDE 778
E ++ D T++INF+ SDSDE
Sbjct: 717 ETKEQDTEKTEDINFN--SDSDE 737
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297836204|ref|XP_002885984.1| hypothetical protein ARALYDRAFT_343169 [Arabidopsis lyrata subsp. lyrata] gi|297331824|gb|EFH62243.1| hypothetical protein ARALYDRAFT_343169 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 924 bits (2389), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/764 (59%), Positives = 586/764 (76%), Gaps = 26/764 (3%)
Query: 22 FFPHVTTVRTPRSYHFLSAPLSSATSQSTFVEQLAGEKDSSQEEKWDMFKNSDAESGSVD 81
FF H +T RTP L S+A TFVE L G +S + S + D
Sbjct: 85 FFSHSST-RTPP----LFTANSAAQRSGTFVEHLTGITESK-----------EGSSEAND 128
Query: 82 F-DVGTAGSEMRHLGEPVVEVIELEEL----PEQWRRAKLAWLCKELPSHKGGTLVRILN 136
F DV +A +++R++ VE PE+WRR+KLAWLCKE+P+HK TLVR+LN
Sbjct: 129 FGDVESARNDIRNVTTRRVETEVEVRELEELPEEWRRSKLAWLCKEVPTHKAVTLVRLLN 188
Query: 137 AQKKWLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKF 196
AQKKW+RQED TY+AVHCMRIRENETGFRVY WM QQ+WYRFDF L TKLADY+GKERKF
Sbjct: 189 AQKKWVRQEDATYIAVHCMRIRENETGFRVYRWMTQQNWYRFDFGLVTKLADYLGKERKF 248
Query: 197 AKCRDIFDDIINQGRVPSEMTFHILIVAYLSA-PVQGCLDEACSIYNRMIQLGGYQPRPS 255
KCR++FDDI+NQGRVPSE TFHIL+VAYLS+ V+GCL+EACS+YNRMIQLGGY+PR S
Sbjct: 249 TKCREVFDDIMNQGRVPSESTFHILVVAYLSSLSVEGCLEEACSVYNRMIQLGGYKPRLS 308
Query: 256 LHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKER 315
LHNSLFRAL+SK GG+ L+QAEFIFHN++T+GLE+QKDIYSGLIWLHS Q+ +DK+R
Sbjct: 309 LHNSLFRALISKRGGILNDQLKQAEFIFHNVVTTGLEVQKDIYSGLIWLHSCQEEVDKDR 368
Query: 316 ISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKME 375
I+ L++EM +AGF+E KEV++S+LR AKEG VE+ E+TWL LL+ D GIP+ AFVYKME
Sbjct: 369 INFLREEMMKAGFQESKEVVVSLLRAYAKEGGVEEVERTWLELLDLDCGIPSQAFVYKME 428
Query: 376 AYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKP 435
AY+K+G+F K+LEIFREM+++LG A+V YHKIIE+LCK ++ E E+L+KEF E+G KP
Sbjct: 429 AYSKVGDFAKALEIFREMEKQLGGATVSGYHKIIEVLCKVQQVEFVETLLKEFEESGKKP 488
Query: 436 LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFN 495
L+PSYI + MY +LG+H++L +AF ECLEKC+P++TIY IYL+SL GN+EKA ++FN
Sbjct: 489 LLPSYIEIAKMYFDLGLHEKLEMAFVECLEKCQPSQTIYNIYLDSLVKIGNLEKAGDVFN 548
Query: 496 HMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLN 555
M ++ TI VN RSCN +L YL SG V+AE+IYDLM +KKYEIE MEKLDY+LSL
Sbjct: 549 EMKNNGTINVNARSCNNLLKGYLDSGKQVQAERIYDLMRMKKYEIEPLLMEKLDYILSLK 608
Query: 556 RKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLY 615
+KEVKKP+S+ LS EQRE L+GLLLGGL IESD+++K HMIRF+F ENS+ H +L+++++
Sbjct: 609 KKEVKKPLSMKLSKEQREVLVGLLLGGLQIESDKEKKSHMIRFEFRENSQAHLILKQHIH 668
Query: 616 DQYHEWLHPSFKVSDGNDD-IPYKYSTISHPYFCFYADKFWPKGRLVIPKLIHRWLTPRA 674
DQ+ EWLHP +S+ +D IP+++ ++ H YF FYA+ FWPKG+ IP LIHRWL+P +
Sbjct: 669 DQFREWLHP---LSNFQEDIIPFEFYSVPHSYFGFYAEHFWPKGQPEIPNLIHRWLSPHS 725
Query: 675 LAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKTLKARSLDCRVKKKGRVFWIGFLGSNS 734
LAYW+MY G +TS GDI+L+LK S EG+ V K L+A+S++CRVKKKG++FWIG G+NS
Sbjct: 726 LAYWYMYSGFKTSSGDIILRLKGSLEGVEKVVKALRAKSMECRVKKKGKIFWIGLQGTNS 785
Query: 735 TLFWKLIEPYVLDELKEDLLNEGSEYRKLDTQNINFDCGSDSDE 778
LFW LIEPYVL++LK+ L TQN D +E
Sbjct: 786 ALFWNLIEPYVLEDLKDHLKPPSESIGNASTQNQKLDSTKPVEE 829
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240254458|ref|NP_565382.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|218546786|sp|Q9XIL5.3|PP154_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g15820 gi|25411674|pir||G84533 hypothetical protein At2g15820 [imported] - Arabidopsis thaliana gi|330251345|gb|AEC06439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 919 bits (2375), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/776 (59%), Positives = 597/776 (76%), Gaps = 37/776 (4%)
Query: 22 FFPHVTTVRTPRSYHFLSAPLSSATSQSTFVEQLAGEKDSSQEEKWDMFKNSDAESGSVD 81
FF H +T RTP L S+A TFVE L G +S + +E+
Sbjct: 91 FFSHSST-RTPP----LFTANSTAQRSGTFVEHLTGITESEE---------GISEANGFG 136
Query: 82 FDVGTAGSEMRHLG----EPVVEVIELEELPEQWRRAKLAWLCKELPSHKGGTLVRILNA 137
DV +A +++R++ E EV ELEELPE+WRR+KLAWLCKE+P+HK TLVR+LNA
Sbjct: 137 -DVESARNDIRNVATRRIETEFEVRELEELPEEWRRSKLAWLCKEVPTHKAVTLVRLLNA 195
Query: 138 QKKWLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFA 197
QKKW+RQED TY++VHCMRIRENETGFRVY WM QQ+WYRFDF L TKLA+Y+GKERKF
Sbjct: 196 QKKWVRQEDATYISVHCMRIRENETGFRVYRWMTQQNWYRFDFGLTTKLAEYLGKERKFT 255
Query: 198 KCRDIFDDIINQGRVPSEMTFHILIVAYLSA-PVQGCLDEACSIYNRMIQLGGYQPRPSL 256
KCR++FDD++NQGRVPSE TFHIL+VAYLS+ V+GCL+EACS+YNRMIQLGGY+PR SL
Sbjct: 256 KCREVFDDVLNQGRVPSESTFHILVVAYLSSLSVEGCLEEACSVYNRMIQLGGYKPRLSL 315
Query: 257 HNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERI 316
HNSLFRALVSK GG+ L+QAEFIFHN++T+GLE+QKDIYSGLIWLHS QD +D RI
Sbjct: 316 HNSLFRALVSKQGGILNDQLKQAEFIFHNVVTTGLEVQKDIYSGLIWLHSCQDEVDIGRI 375
Query: 317 SLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEA 376
+ L++EM++AGF+E KEV++S+LR AKEG VE+ E+TWL LL+ D GIP+ AFVYK+EA
Sbjct: 376 NSLREEMKKAGFQESKEVVVSLLRAYAKEGGVEEVERTWLELLDLDCGIPSQAFVYKIEA 435
Query: 377 YAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL 436
Y+K+G+F K++EIFREM++ +G A++ YHKIIE+LCK ++ EL E+LMKEF E+G KPL
Sbjct: 436 YSKVGDFAKAMEIFREMEKHIGGATMSGYHKIIEVLCKVQQVELVETLMKEFEESGKKPL 495
Query: 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNH 496
+PS+I + MY +LG+H++L +AF +CLEKC+P++ IY IYL+SL GN+EKA ++FN
Sbjct: 496 LPSFIEIAKMYFDLGLHEKLEMAFVQCLEKCQPSQPIYNIYLDSLTKIGNLEKAGDVFNE 555
Query: 497 MHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNR 556
M ++ TI V+ RSCN +L YL G V+AE+IYDLM +KKYEIE MEKLDY+LSL +
Sbjct: 556 MKNNGTINVSARSCNSLLKGYLDCGKQVQAERIYDLMRMKKYEIEPPLMEKLDYILSLKK 615
Query: 557 KEVKK-PVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLY 615
KEVKK P S+ LS +QRE L+GLLLGGL IESD+++K HMI+F+F ENS+ H VL++ ++
Sbjct: 616 KEVKKRPFSMKLSKDQREVLVGLLLGGLQIESDKEKKSHMIKFEFRENSQAHLVLKQNIH 675
Query: 616 DQYHEWLHPSFKVSDGNDD-IPYKYSTISHPYFCFYADKFWPKGRLVIPKLIHRWLTPRA 674
DQ+ EWLHP +S+ +D IP+++ ++ H YF FYA+ +WPKG+ IPKLIHRWL+P +
Sbjct: 676 DQFREWLHP---LSNFQEDIIPFEFYSVPHSYFGFYAEHYWPKGQPEIPKLIHRWLSPHS 732
Query: 675 LAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKTLKARSLDCRVKKKGRVFWIGFLGSNS 734
LAYW+MY G +TS GDI+L+LK S EG+ V K L+A+S++CRVKKKG+VFWIG G+NS
Sbjct: 733 LAYWYMYSGVKTSSGDIILRLKGSLEGVEKVVKALQAKSMECRVKKKGKVFWIGLQGTNS 792
Query: 735 TLFWKLIEPYVLDELKEDLLNEGSE----YRKLDTQNINFDCGSDSDEKASDYSDD 786
LFWKLIEP+VL+ LKE L SE ++ + Q+INF SD+SDD
Sbjct: 793 ALFWKLIEPHVLENLKEH-LKPASESLDNVKEAEEQSINFKSN-------SDHSDD 840
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357436027|ref|XP_003588289.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357469333|ref|XP_003604951.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357520985|ref|XP_003630781.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355477337|gb|AES58540.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355506006|gb|AES87148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355524803|gb|AET05257.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 892 bits (2305), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/715 (59%), Positives = 547/715 (76%), Gaps = 18/715 (2%)
Query: 65 EKWDMFKNSDAESGSVDFDVGTA-GSEMRHLGEPVVEVIELEELPEQWRRAKLAWLCKEL 123
E+W + ++ + + F T E R L P VEV EL E+PE WRR+++AWLCKEL
Sbjct: 74 EQWLLHEDLPDNNDNDIFHFSTVEADEKRRLPRPEVEVKELSEVPELWRRSRVAWLCKEL 133
Query: 124 PSHKGGTLVRILNAQKKWLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALA 183
P+HK GTL+RILNAQ+KWLRQ+D TY+ +HC+RIRENET FRVY+WMMQ+ WYRFDFAL+
Sbjct: 134 PAHKAGTLIRILNAQRKWLRQDDATYIIMHCLRIRENETAFRVYKWMMQRSWYRFDFALS 193
Query: 184 TKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNR 243
T+LADYMGKERKF KCR++FDDIINQGRVPSE TFHILIVAYLS+ VQGCLDEA I+++
Sbjct: 194 TRLADYMGKERKFTKCREVFDDIINQGRVPSESTFHILIVAYLSSSVQGCLDEAFGIFHQ 253
Query: 244 MIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIW 303
MIQLGGYQPR SLHNS+F+AL+S+PG SK YL+QAEFI+H L+T+GL++ KDIY GLIW
Sbjct: 254 MIQLGGYQPRLSLHNSIFKALISEPGNFSKQYLKQAEFIYHRLVTNGLDVHKDIYGGLIW 313
Query: 304 LHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDN 363
LHSYQD+IDKERI L++EM +AG +E + + AEKTW +L + ++
Sbjct: 314 LHSYQDSIDKERIEALRQEMLRAGIDEREGEVEE-------------AEKTWCKLSQFES 360
Query: 364 GIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTES 423
P+ AFVYKME Y+K+G MKSLEIFREM+ +LG SV AY+KIIE+LCKA+E+E ES
Sbjct: 361 NPPSQAFVYKMEVYSKVGMPMKSLEIFREMKLKLGKTSVAAYNKIIEILCKAQESEFAES 420
Query: 424 LMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN 483
+M +FV++G+KPL PSY+ L NMY N+ HD+L AFS+CLEKC PN +Y IYL+SL
Sbjct: 421 IMTDFVKSGLKPLTPSYVYLLNMYFNMESHDKLEEAFSQCLEKCHPNSAVYSIYLDSLVK 480
Query: 484 AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESA 543
G I+KAE+IF+ M D +IGV+ RSCNIIL+ YL SG+ +KAEKIYDLMC KKYEI++
Sbjct: 481 VGKIDKAEDIFSQMFRDTSIGVSARSCNIILNGYLYSGNHLKAEKIYDLMCQKKYEIDAP 540
Query: 544 WMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNEN 603
MEKL+Y+LSL RK +KKP+S+ L+ EQRE LIG+LLGGL I+SD+K K H+I F F+ N
Sbjct: 541 LMEKLEYILSLRRKTIKKPMSMKLNKEQREILIGMLLGGLQIDSDDKNKNHIIHFNFDGN 600
Query: 604 SRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPYKYSTISHPYFCFYADKFWPKGRLVIP 663
S H VL+ +++ Q++EWL P+ K S +++IP K+ TI +F FYAD+FWP G+ IP
Sbjct: 601 SVSHYVLKSHIHRQFYEWLPPTSKPSGDSENIPGKFCTIPSSHFGFYADQFWPNGQPTIP 660
Query: 664 KLIHRWLTPRALAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKTLKARSLDCRVKKKGR 723
KL+HRWL+P LAYW+MYGGHR S GD+LLK+K S EG+ + K KA S+DC+VK KG+
Sbjct: 661 KLVHRWLSPCVLAYWYMYGGHRNSSGDVLLKIKGSREGVENIVKKFKAMSIDCKVKGKGK 720
Query: 724 VFWIGFLGSNSTLFWKLIEPYVLDELKEDLLNEGSEYRKLD---TQNINFDCGSD 775
VFWIG LGSN+T FWKL+EPY+L+++K D G D TQ+INF SD
Sbjct: 721 VFWIGILGSNTTWFWKLVEPYILEDVK-DFSKAGVNTMGQDLTETQDINFSSESD 774
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 787 | ||||||
| TAIR|locus:2044541 | 849 | OTP51 "ORGANELLE TRANSCRIPT PR | 0.944 | 0.875 | 0.575 | 6e-238 | |
| TAIR|locus:2827701 | 874 | AT2G17140 [Arabidopsis thalian | 0.405 | 0.364 | 0.228 | 1e-13 | |
| TAIR|locus:2157732 | 723 | EMB1006 "embryo defective 1006 | 0.442 | 0.481 | 0.214 | 4.3e-13 | |
| TAIR|locus:2031825 | 517 | AT1G13040 [Arabidopsis thalian | 0.420 | 0.640 | 0.245 | 1.7e-12 | |
| TAIR|locus:2024367 | 607 | AT1G09680 "AT1G09680" [Arabido | 0.345 | 0.448 | 0.265 | 3.9e-12 | |
| TAIR|locus:1005716687 | 544 | AT1G66345 "AT1G66345" [Arabido | 0.470 | 0.680 | 0.222 | 5.2e-12 | |
| TAIR|locus:2175443 | 952 | AT5G04810 [Arabidopsis thalian | 0.430 | 0.356 | 0.233 | 2.1e-11 | |
| TAIR|locus:2150024 | 729 | AT5G01110 [Arabidopsis thalian | 0.416 | 0.449 | 0.231 | 5.7e-11 | |
| TAIR|locus:2119747 | 660 | EMB1025 "embryo defective 1025 | 0.397 | 0.474 | 0.239 | 7e-11 | |
| TAIR|locus:2140220 | 532 | AT4G02820 "AT4G02820" [Arabido | 0.329 | 0.486 | 0.231 | 1.7e-10 |
| TAIR|locus:2044541 OTP51 "ORGANELLE TRANSCRIPT PROCESSING 51" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2294 (812.6 bits), Expect = 6.0e-238, P = 6.0e-238
Identities = 440/764 (57%), Positives = 572/764 (74%)
Query: 22 FFPHVTTVRTPRSYHFLSAPLSSATSQSTFVEQLAGEKDSSQEEKWDMFKNSDAESGSVD 81
FF H +T RTP L S+A TFVE L G +S +E + D ES D
Sbjct: 91 FFSHSST-RTPP----LFTANSTAQRSGTFVEHLTGITES-EEGISEANGFGDVESARND 144
Query: 82 F-DVGTAGSEMRHLGXXXXXXXXXXXXXXQWRRAKLAWLCKELPSHKGGTLVRILNAQKK 140
+V T E +WRR+KLAWLCKE+P+HK TLVR+LNAQKK
Sbjct: 145 IRNVATRRIETEF------EVRELEELPEEWRRSKLAWLCKEVPTHKAVTLVRLLNAQKK 198
Query: 141 WLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCR 200
W+RQED TY++VHCMRIRENETGFRVY WM QQ+WYRFDF L TKLA+Y+GKERKF KCR
Sbjct: 199 WVRQEDATYISVHCMRIRENETGFRVYRWMTQQNWYRFDFGLTTKLAEYLGKERKFTKCR 258
Query: 201 DIFDDIINQGRVPSEMTFHILIVAYLSA-PVQGCLDEACSIYNRMIQLGGYQPRPSLHNS 259
++FDD++NQGRVPSE TFHIL+VAYLS+ V+GCL+EACS+YNRMIQLGGY+PR SLHNS
Sbjct: 259 EVFDDVLNQGRVPSESTFHILVVAYLSSLSVEGCLEEACSVYNRMIQLGGYKPRLSLHNS 318
Query: 260 LFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLL 319
LFRALVSK GG+ L+QAEFIFHN++T+GLE+QKDIYSGLIWLHS QD +D RI+ L
Sbjct: 319 LFRALVSKQGGILNDQLKQAEFIFHNVVTTGLEVQKDIYSGLIWLHSCQDEVDIGRINSL 378
Query: 320 KKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK 379
++EM++AGF+E KEV++S+LR AKEG VE+ E+TWL LL+ D GIP+ AFVYK+EAY+K
Sbjct: 379 REEMKKAGFQESKEVVVSLLRAYAKEGGVEEVERTWLELLDLDCGIPSQAFVYKIEAYSK 438
Query: 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPS 439
+G+F K++EIFREM++ +G A++ YHKIIE+LCK ++ EL E+LMKEF E+G KPL+PS
Sbjct: 439 VGDFAKAMEIFREMEKHIGGATMSGYHKIIEVLCKVQQVELVETLMKEFEESGKKPLLPS 498
Query: 440 YINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499
+I + MY +LG+H++L +AF +CLEKC+P++ IY IYL+SL GN+EKA ++FN M +
Sbjct: 499 FIEIAKMYFDLGLHEKLEMAFVQCLEKCQPSQPIYNIYLDSLTKIGNLEKAGDVFNEMKN 558
Query: 500 DQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEV 559
+ TI V+ RSCN +L YL G V+AE+IYDLM +KKYEIE MEKLDY+LSL +KEV
Sbjct: 559 NGTINVSARSCNSLLKGYLDCGKQVQAERIYDLMRMKKYEIEPPLMEKLDYILSLKKKEV 618
Query: 560 KK-PVSLNLSSEQRENXXXXXXXXXCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQY 618
KK P S+ LS +QRE IESD+++K HMI+F+F ENS+ H VL++ ++DQ+
Sbjct: 619 KKRPFSMKLSKDQREVLVGLLLGGLQIESDKEKKSHMIKFEFRENSQAHLVLKQNIHDQF 678
Query: 619 HEWLHPSFKVSDGNDDIPYKYSTISHPYFCFYADKFWPKGRLVIPKLIHRWLTPRALAYW 678
EWLHP + D IP+++ ++ H YF FYA+ +WPKG+ IPKLIHRWL+P +LAYW
Sbjct: 679 REWLHPLSNFQE--DIIPFEFYSVPHSYFGFYAEHYWPKGQPEIPKLIHRWLSPHSLAYW 736
Query: 679 FMYGGHRTSVGDILLKLKVSSEGIALVFKTLKARSLDCRVKKKGRVFWIGFLGSNSTLFW 738
+MY G +TS GDI+L+LK S EG+ V K L+A+S++CRVKKKG+VFWIG G+NS LFW
Sbjct: 737 YMYSGVKTSSGDIILRLKGSLEGVEKVVKALQAKSMECRVKKKGKVFWIGLQGTNSALFW 796
Query: 739 KLIEPYVLDELKEDL--LNEGSE-YRKLDTQNINFDCGSD-SDE 778
KLIEP+VL+ LKE L +E + ++ + Q+INF SD SD+
Sbjct: 797 KLIEPHVLENLKEHLKPASESLDNVKEAEEQSINFKSNSDHSDD 840
|
|
| TAIR|locus:2827701 AT2G17140 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 215 (80.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 76/333 (22%), Positives = 152/333 (45%)
Query: 200 RDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNS 259
R++FD++ +G P+E TF IL+ Y A G D+ + N M G P ++N+
Sbjct: 167 RELFDEMPEKGCKPNEFTFGILVRGYCKA---GLTDKGLELLNAMESFG-VLPNKVIYNT 222
Query: 260 LFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNI-DKERISL 318
+ + + G + +E + + GL ++ I + + D RI
Sbjct: 223 IVSSFCRE--GRN----DDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFS 276
Query: 319 LKKEMQQAGFEEGKEVLLSV-LRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAY 377
+ + G + ++ L+ K G +EDA+ + + E+D+ ++ ++
Sbjct: 277 DMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGL 336
Query: 378 AKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLM 437
+ G+F+++ + ++M ++ S+ +Y+ +++ LCK ++++ G+ P
Sbjct: 337 VRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDA 396
Query: 438 PSYINLTNMYLNLGMHDRLHLAFSECLEK-CRPNRTIYGIYLESLKNAGNIEKAEEIFNH 496
+Y L + Y ++G D E + C PN I L SL G I +AEE+
Sbjct: 397 VTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRK 456
Query: 497 MHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKI 529
M+ ++ G++T +CNII+ SG+ KA +I
Sbjct: 457 MN-EKGYGLDTVTCNIIVDGLCGSGELDKAIEI 488
|
|
| TAIR|locus:2157732 EMB1006 "embryo defective 1006" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 208 (78.3 bits), Expect = 4.3e-13, P = 4.3e-13
Identities = 79/368 (21%), Positives = 163/368 (44%)
Query: 167 YEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYL 226
YEWM Q + L +G+ER + ++ ++ ++ + ++ L
Sbjct: 225 YEWMSLQEPSLASPRACSVLFTLLGRERMADYILLLLSNLPDKEEF-RDVRLYNAAISGL 283
Query: 227 SAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNL 286
SA + D+A +Y M ++ Y + ++ + K G +K + IF +
Sbjct: 284 SASQR--YDDAWEVYEAMDKINVYPDNVTC--AILITTLRKAGRSAKEVWE----IFEKM 335
Query: 287 LTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEG 346
G++ +D++ GL+ S+ D KE +++ EM++ G V +++ K
Sbjct: 336 SEKGVKWSQDVFGGLV--KSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSN 393
Query: 347 DVEDAEKTWLRLLESDNGIPTPAFVYK--MEAYAKIGEFMKSLEIFREMQERLG-SASVP 403
+E+ E + + D G+ A Y M+AYA+ + + REM++ LG +V
Sbjct: 394 HIEEVEGLFTEM--RDKGLKPSAATYNILMDAYARRMQPDIVETLLREMED-LGLEPNVK 450
Query: 404 AYHKIIELLCKAEE-TELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462
+Y +I + ++ +++ + G+KP SY L + Y G H++ + +F E
Sbjct: 451 SYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEE 510
Query: 463 -CLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSG 521
C E +P+ Y L++ + +G+ K EI+ M ++ G + N +L + G
Sbjct: 511 MCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRI-TYNTLLDGFAKQG 569
Query: 522 DFVKAEKI 529
+++A +
Sbjct: 570 LYIEARDV 577
|
|
| TAIR|locus:2031825 AT1G13040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 200 (75.5 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 86/350 (24%), Positives = 146/350 (41%)
Query: 188 DYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQL 247
D + +E K F ++ +GR P +++ ILI A G + +A I+N MI+
Sbjct: 122 DLLCRENKVGFAVQTFFCMVQRGREPDVVSYTILINGLFRA---GKVTDAVEIWNAMIR- 177
Query: 248 GGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSY 307
G P N ALV K L E + + ++ +++ +Y+ LI
Sbjct: 178 SGVSP----DNKACAALVVGLCHARKVDLAY-EMVAEEIKSARVKLSTVVYNALISGFCK 232
Query: 308 QDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT 367
I+K LK M + G E +L ++ AE ++ S GI
Sbjct: 233 AGRIEKAEA--LKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGVMAEMVRS--GIQL 288
Query: 368 PAFVYK--MEAYAKIGEFMKSLEIF-REMQERLGSASVPAYHKIIELLCKAEETELTESL 424
A+ Y ++ + ++ K +EM+ R G V +Y +IE C+A T L
Sbjct: 289 DAYSYNQLLKRHCRVSHPDKCYNFMVKEMEPR-GFCDVVSYSTLIETFCRASNTRKAYRL 347
Query: 425 MKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK-CRPNRTIYGIYLESLKN 483
+E + GM + +Y +L +L G + E P+R Y L+ L
Sbjct: 348 FEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCK 407
Query: 484 AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533
+GN++KA +FN M + I + S N ++S SG +A K+++ M
Sbjct: 408 SGNVDKAYGVFNDM-IEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDM 456
|
|
| TAIR|locus:2024367 AT1G09680 "AT1G09680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 198 (74.8 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 77/290 (26%), Positives = 129/290 (44%)
Query: 148 TYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDII 207
T + +C ++ + GFR+ + M++ R D + L + + KE K +FD++
Sbjct: 280 TLINGYC-KVGNLDEGFRL-KHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMC 337
Query: 208 NQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSK 267
+G +P+++ F LI + G +D Y +M+ G QP L+N+L K
Sbjct: 338 KRGLIPNDVIFTTLIHGHSR---NGEIDLMKESYQKMLSKG-LQPDIVLYNTLVNGFC-K 392
Query: 268 PGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAG 327
G L A I ++ GL K Y+ LI + D E ++KEM Q G
Sbjct: 393 NGDLVA-----ARNIVDGMIRRGLRPDKITYTTLI--DGFCRGGDVETALEIRKEMDQNG 445
Query: 328 FEEGKEVLLSVLRVCA--KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMK 385
E + V S L VC KEG V DAE+ +L + + M+A+ K G+
Sbjct: 446 IELDR-VGFSAL-VCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQT 503
Query: 386 SLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKP 435
++ +EMQ SV Y+ ++ LCK + + + L+ + G+ P
Sbjct: 504 GFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVP 553
|
|
| TAIR|locus:1005716687 AT1G66345 "AT1G66345" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 196 (74.1 bits), Expect = 5.2e-12, P = 5.2e-12
Identities = 86/386 (22%), Positives = 166/386 (43%)
Query: 150 LAVHCM-RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIIN 208
L V C +IR E GF V++ + + L T L Y K + I++ I+
Sbjct: 169 LLVQCYAKIRYLELGFDVFKRLCDCGFTLSVITLNT-LIHYSSKSKIDDLVWRIYECAID 227
Query: 209 QGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKP 268
+ P+E+T I+I +G L E + +R+ G + PS+ + +LV +
Sbjct: 228 KRIYPNEITIRIMIQVLCK---EGRLKEVVDLLDRIC---GKRCLPSV--IVNTSLVFRV 279
Query: 269 GGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGF 328
L + ++++ + LL + + YS +++ + + ++ R + EM Q GF
Sbjct: 280 --LEEMRIEESMSLLKRLLMKNMVVDTIGYSIVVYAKAKEGDLVSAR--KVFDEMLQRGF 335
Query: 329 EEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLE 388
V +RVC ++GDV++AE+ + ES F + +A+ G K LE
Sbjct: 336 SANSFVYTVFVRVCCEKGDVKEAERLLSEMEESGVSPYDETFNCLIGGFARFGWEEKGLE 395
Query: 389 IFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL 448
M R S A++++++ + K E ++ + ++ G P +Y +L ++
Sbjct: 396 YCEVMVTRGLMPSCSAFNEMVKSVSKIENVNRANEILTKSIDKGFVPDEHTYSHLIRGFI 455
Query: 449 NLGMHDR-LHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT 507
D+ L L + K P ++ + L G +E E+ M + I N
Sbjct: 456 EGNDIDQALKLFYEMEYRKMSPGFEVFRSLIVGLCTCGKVEAGEKYLKIMKK-RLIEPNA 514
Query: 508 RSCNIILSAYLSSGDFVKAEKIYDLM 533
+ ++ A+ GD A+++Y+ M
Sbjct: 515 DIYDALIKAFQKIGDKTNADRVYNEM 540
|
|
| TAIR|locus:2175443 AT5G04810 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 194 (73.4 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 85/364 (23%), Positives = 156/364 (42%)
Query: 177 RFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDE 236
R +F L K + G+ + R+ F+ + +G P+ + LI AY V +DE
Sbjct: 309 RTEFGLMVK---FYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYA---VGRDMDE 362
Query: 237 ACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKY-YLQQAEFIFHNLLTSGLEIQK 295
A S +M + G + SL V GG SK + + A++ F +
Sbjct: 363 ALSCVRKMKEEG-------IEMSLVTYSVIV-GGFSKAGHAEAADYWFDEAKRIHKTLNA 414
Query: 296 DIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTW 355
IY +I+ H N+ ER L +EM++ G + + +++ D + +
Sbjct: 415 SIYGKIIYAHCQTCNM--ERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVF 472
Query: 356 LRLLESDNGIPTPAFV-YK--MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELL 412
RL E G TP V Y + Y K+G+ K+LE+ R M+E ++ Y +I
Sbjct: 473 KRLKEC--GF-TPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGF 529
Query: 413 CKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNR 471
K ++ ++ ++ V+ GMKP + Y N+ + + +G DR E + + RP
Sbjct: 530 VKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTT 589
Query: 472 TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYD 531
+ + +G++ ++ E+F+ M + + N +++ + KA +I D
Sbjct: 590 RTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPT-VHTFNGLINGLVEKRQMEKAVEILD 648
Query: 532 LMCL 535
M L
Sbjct: 649 EMTL 652
|
|
| TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 193 (73.0 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 81/350 (23%), Positives = 157/350 (44%)
Query: 192 KERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQ 251
K+ K K + +G P +T++ LI AY S +G ++EA + N M G +
Sbjct: 247 KDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSS---KGLMEEAFELMNAMPGKG-FS 302
Query: 252 PRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQ-DN 310
P +N++ L K G KY ++A+ +F +L SGL Y L+ + D
Sbjct: 303 PGVYTYNTVINGLC-KHG---KY--ERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDV 356
Query: 311 IDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAF 370
++ E++ +M+ S++ + + G+++ A + + E+ G+
Sbjct: 357 VETEKVF---SDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEA--GLIPDNV 411
Query: 371 VYKM--EAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEF 428
+Y + + Y + G ++ + EM ++ + V Y+ I+ LCK + + L E
Sbjct: 412 IYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEM 471
Query: 429 VETGMKPLMPSYINLTNMYLNLG-MHDRLHLAFSECLEK-CRPNRTIYGIYLESLKNAGN 486
E + P + L + + LG + + + L F + EK R + Y L+ G+
Sbjct: 472 TERALFPDSYTLTILIDGHCKLGNLQNAMEL-FQKMKEKRIRLDVVTYNTLLDGFGKVGD 530
Query: 487 IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536
I+ A+EI+ M S + + S +I+++A S G +A +++D M K
Sbjct: 531 IDTAKEIWADMVSKEILPTPI-SYSILVNALCSKGHLAEAFRVWDEMISK 579
|
|
| TAIR|locus:2119747 EMB1025 "embryo defective 1025" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 187 (70.9 bits), Expect = 7.0e-11, P = 7.0e-11
Identities = 81/338 (23%), Positives = 157/338 (46%)
Query: 186 LADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMI 245
L D + K+ + + D++ +G VP+E+T++ LI ++G LD+A S+ RM+
Sbjct: 263 LIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLC---LKGKLDKAVSLLERMV 319
Query: 246 QLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLH 305
P + +L LV + A + ++ G + + IYS LI
Sbjct: 320 S-SKCIPNDVTYGTLINGLVKQRRATD------AVRLLSSMEERGYHLNQHIYSVLI-SG 371
Query: 306 SYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVL--RVCAKEGDVEDAEKTWLRLLESDN 363
+++ +E +SL +K M + G + V+ SVL +C +EG +A++ R++ S
Sbjct: 372 LFKEGKAEEAMSLWRK-MAEKGCKPNI-VVYSVLVDGLC-REGKPNEAKEILNRMIAS-G 427
Query: 364 GIPTPAFVYK--MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELT 421
+P A+ Y M+ + K G +++++++EM + S + Y +I+ LC +
Sbjct: 428 CLPN-AYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEA 486
Query: 422 ESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE--CLE--KCRPNRTIYGIY 477
+ + + G+KP +Y ++ +G D + E C E K +P+ Y I
Sbjct: 487 MMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNIL 546
Query: 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILS 515
L+ L +I +A ++ N M D+ + +CN L+
Sbjct: 547 LDGLCMQKDISRAVDLLNSM-LDRGCDPDVITCNTFLN 583
|
|
| TAIR|locus:2140220 AT4G02820 "AT4G02820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 182 (69.1 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 63/272 (23%), Positives = 124/272 (45%)
Query: 298 YSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLR 357
YS L L++ DN++K R++L KEM++ ++ + S++ + A GD + TW +
Sbjct: 269 YSVLTNLYAKTDNVEKARLAL--KEMEKLVSKKNRVAYASLISLHANLGDKDGVNLTWKK 326
Query: 358 LLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEE 417
+ S + ++ + A K+GEF ++ ++ E + G+ + I+ +E
Sbjct: 327 VKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSGTGDARIPNLILAEYMNRDE 386
Query: 418 TELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP---N-RTI 473
L E + VE G+ P ++ LT YL +++ F + ++ + N R +
Sbjct: 387 VLLGEKFYERIVEKGINPSYSTWEILTWAYLKRKDMEKVLDCFGKAIDSVKKWTVNVRLV 446
Query: 474 YGIYLESLKNAGNIEKAEEIFNHMHSDQTIG-VNTRSCNIILSAYLSSGDFVKAEKIYDL 532
G E L+ GN++ AE++ + Q G VNT+ N +L Y +G+ A + +
Sbjct: 447 KGACKE-LEEQGNVKGAEKLMTLL---QKAGYVNTQLYNSLLRTYAKAGEM--ALIVEER 500
Query: 533 MCLKKYEIESAWMEKLDYVLSLNRKEVKKPVS 564
M E++ E + + E+ +S
Sbjct: 501 MAKDNVELDEETKELIRLTSQMRVTEISSTIS 532
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9XIL5 | PP154_ARATH | No assigned EC number | 0.5902 | 0.9390 | 0.8704 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 787 | |||
| pfam03161 | 177 | pfam03161, LAGLIDADG_2, LAGLIDADG DNA endonuclease | 1e-30 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-06 |
| >gnl|CDD|217395 pfam03161, LAGLIDADG_2, LAGLIDADG DNA endonuclease family | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 1e-30
Identities = 55/180 (30%), Positives = 82/180 (45%), Gaps = 15/180 (8%)
Query: 571 QRENLIGLLLGGLCIESDEKRKRHMIRFQF-NENSRMHSVLRRYLYDQYH----EWLHPS 625
Q+E ++GLLLG IES +K R RF+F N +H Y P+
Sbjct: 1 QKEIIVGLLLGDGHIESRKKGTRISFRFEFKNYEYILHVY---EKLLGYCTSNPPPRKPT 57
Query: 626 FKVSDGNDDIPYKYSTISHPYFCFYADKFWPKG-RLVIPKLIHRWLTPRALAYWFMYGG- 683
G I ++++T S P F + F+ G + ++P LI +LTP ALAYW M G
Sbjct: 58 RGNKSGKSYISWEFNTRSLPSFNKLYELFYINGKKKIVPNLIEEYLTPLALAYWIMDDGG 117
Query: 684 --HRTSVGDILLKLKVSSEGIALVFKTLKARS-LDCRVKKKGR--VFWIGFLGSNSTLFW 738
+ TS G + + E + + K LK + L+C +KK G + I + LF
Sbjct: 118 NKNSTSKGIKICTQSFTLEEVQFLIKLLKIKFNLECTIKKNGSSNKYRIYIPAKSMALFR 177
|
This is a family of site-specific DNA endonucleases encoded by DNA mobile elements. Similar to pfam00961, the members of this family are also LAGLIDADG endonucleases. Length = 177 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.8 bits (117), Expect = 2e-06
Identities = 38/227 (16%), Positives = 77/227 (33%), Gaps = 3/227 (1%)
Query: 271 LSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEE 330
L + E + L + L +++ L K +
Sbjct: 35 LLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNL 94
Query: 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIF 390
E LL++ + G E+A + + L D + + A ++G++ ++LE++
Sbjct: 95 A-EALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELY 153
Query: 391 REMQE--RLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL 448
+ E + A + LL E L+++ ++ + +NL +YL
Sbjct: 154 EKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL 213
Query: 449 NLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFN 495
LG ++ + + LE N L G E+A E
Sbjct: 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALE 260
|
Length = 291 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 787 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.88 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.88 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.78 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.78 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.78 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.77 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.75 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.74 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.73 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.72 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.71 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.66 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.65 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.62 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.6 | |
| PF03161 | 178 | LAGLIDADG_2: LAGLIDADG DNA endonuclease family; In | 99.57 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.49 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.45 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.43 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.4 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.38 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.37 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.37 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.36 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.36 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.34 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.33 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.33 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.33 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.33 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.32 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.32 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.32 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.27 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.27 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.26 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.26 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.24 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.23 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.21 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.21 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.18 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.16 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.13 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.11 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.09 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.08 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.08 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.07 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.06 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.06 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.06 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.03 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.01 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.98 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.98 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.96 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.91 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.89 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.85 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.81 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.81 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.78 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.77 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.76 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.73 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.71 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.65 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.64 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.63 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.6 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.56 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.55 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.54 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.53 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.52 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.52 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.52 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.45 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.44 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.42 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.39 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.36 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.35 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.34 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.33 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.32 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.31 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.31 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.29 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.26 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.25 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.22 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.21 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.21 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.21 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.21 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.2 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.2 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.2 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.2 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.2 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.2 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.17 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.17 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.17 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.14 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.14 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.13 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.11 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.1 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.09 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.08 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.04 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.0 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.97 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.97 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.92 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.92 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.92 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.92 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.91 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.85 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.83 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.82 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.82 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.8 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.77 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.76 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.7 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.68 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.64 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.62 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.62 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.62 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.58 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.54 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.5 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.46 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.43 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.39 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.38 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.37 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.33 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.29 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.28 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.27 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.15 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.14 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.12 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.12 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.11 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.05 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.04 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.94 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.9 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.9 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.89 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.88 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.87 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.85 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.84 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.78 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.76 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.72 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.7 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.66 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.57 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.55 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.53 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.47 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.43 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.35 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.35 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.31 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.27 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.22 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.19 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.16 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.13 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.05 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.98 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.87 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.75 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.72 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.65 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.62 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.55 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.55 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.51 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.49 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.46 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.43 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.3 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.3 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.29 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.2 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.12 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.12 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.02 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.99 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.84 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.68 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.62 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.58 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.58 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 94.48 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.45 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.45 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.32 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.28 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.06 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.05 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.01 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 93.95 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.95 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.89 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 93.87 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.85 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 93.82 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.71 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 93.68 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 93.66 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.61 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 93.59 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.5 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.41 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.13 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.07 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.94 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.93 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.78 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.6 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.96 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.94 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 91.81 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 91.75 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.73 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.53 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 90.93 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.9 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 90.77 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 90.5 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 90.44 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 90.39 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 90.1 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 90.04 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 89.72 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.33 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 89.03 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 88.69 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 88.24 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 87.83 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 87.56 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 87.15 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.11 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 86.62 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 86.33 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.27 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 86.04 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 85.84 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 85.42 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 85.22 | |
| PF14528 | 77 | LAGLIDADG_3: LAGLIDADG-like domain; PDB: 2CW7_A 2C | 84.96 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 84.89 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 84.57 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 84.03 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 83.58 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 83.52 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 83.12 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 82.85 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 82.44 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 82.37 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 81.46 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 81.42 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 80.79 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 80.56 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 80.4 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 80.37 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-68 Score=628.46 Aligned_cols=616 Identities=17% Similarity=0.147 Sum_probs=493.6
Q ss_pred chhHhhhhCCChhhHHHhhhchh----hHHHHHHHHhhccCCCcchhhHHHHHHhhccccCCcchHHHHH--HHhhcCCh
Q 003913 87 AGSEMRHLGEPVVEVIELEELPE----QWRRAKLAWLCKELPSHKGGTLVRILNAQKKWLRQEDGTYLAV--HCMRIREN 160 (787)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~~~--~~~~~~~~ 160 (787)
+.+.+.+.+..+.+.++|++|+. .|+ .++..+++.+..+.+..++..|... |+.||.+||+.+ +|++.+++
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~~d~~~~n-~li~~~~~~g~~~~A~~~f~~M~~~--g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWN-VLVGGYAKAGYFDEALCLYHRMLWA--GVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCCCCeeEHH-HHHHHHHhCCCHHHHHHHHHHHHHc--CCCCChhHHHHHHHHhCCccch
Confidence 34556778888999999999985 343 4667778889888888888877644 799999999998 89999999
Q ss_pred hHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHH
Q 003913 161 ETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSI 240 (787)
Q Consensus 161 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l 240 (787)
+.+.+++..|.+.| +.||..+||+||++|+++|++++|.++|++|+. ||.++||+||.+|+ +.|++++|+++
T Consensus 204 ~~~~~~~~~~~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~---~~g~~~eAl~l 275 (857)
T PLN03077 204 ARGREVHAHVVRFG-FELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYF---ENGECLEGLEL 275 (857)
T ss_pred hhHHHHHHHHHHcC-CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHH---hCCCHHHHHHH
Confidence 99999999999998 899999999999999999999999999999975 69999999999999 89999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHH-----------------
Q 003913 241 YNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIW----------------- 303 (787)
Q Consensus 241 ~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~----------------- 303 (787)
|++|.+. |+.||.+||+++|.+|++. |+++.|.+++..|.+.|+.||..+|+.++.
T Consensus 276 f~~M~~~-g~~Pd~~ty~~ll~a~~~~------g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 348 (857)
T PLN03077 276 FFTMREL-SVDPDLMTITSVISACELL------GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSR 348 (857)
T ss_pred HHHHHHc-CCCCChhHHHHHHHHHHhc------CChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhh
Confidence 9999986 8999999999999999986 688899999999999898888888887773
Q ss_pred ------------HhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 003913 304 ------------LHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFV 371 (787)
Q Consensus 304 ------------~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 371 (787)
+.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++++.|.+.|+.|+..+||
T Consensus 349 m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n 428 (857)
T PLN03077 349 METKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN 428 (857)
T ss_pred CCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34567777778888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-------
Q 003913 372 YKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLT------- 444 (787)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li------- 444 (787)
+||++|+++|++++|.++|++|.+ +|.++||++|.+|++.|+.++|..+|++|.+ ++.||..||++++
T Consensus 429 ~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g 503 (857)
T PLN03077 429 ALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIG 503 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhc
Confidence 999999999999999999988865 3667777777777777777777777777764 4667766666555
Q ss_pred ----------------------------HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003913 445 ----------------------------NMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNH 496 (787)
Q Consensus 445 ----------------------------~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 496 (787)
++|+++|++++|.++|+.+ .||..+||+||.+|++.|+.++|+++|++
T Consensus 504 ~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~ 579 (857)
T PLN03077 504 ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNR 579 (857)
T ss_pred hHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555556666666666554 68999999999999999999999999999
Q ss_pred hhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HcCCccCHHHHHHHHHHHhhcccccc---cccccCCchHHH
Q 003913 497 MHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC-LKKYEIESAWMEKLDYVLSLNRKEVK---KPVSLNLSSEQR 572 (787)
Q Consensus 497 m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~~~p~~~~~l~~~~~l~~~~~~---~~~~~~l~~~~~ 572 (787)
|.+.| +.||.+||+++|.+|++.|++++|.++|+.|. +.|+.|+..++..+..++.-.....+ .-..|++ +|+
T Consensus 580 M~~~g-~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~--~pd 656 (857)
T PLN03077 580 MVESG-VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPI--TPD 656 (857)
T ss_pred HHHcC-CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCC--CCC
Confidence 99999 89999999999999999999999999999999 56777776666555554443322111 1112333 456
Q ss_pred HHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccc----cCCCCCcceE-Eeeeccc
Q 003913 573 ENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKV----SDGNDDIPYK-YSTISHP 645 (787)
Q Consensus 573 ~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~----~~~~~~~p~~-~~t~~~~ 645 (787)
..+|++|+++|..+++.+.|+.+.+ ++++|+++.+|++|+++|+..|+|++|..+. .++..+.|.. |..+...
T Consensus 657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~ 736 (857)
T PLN03077 657 PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGK 736 (857)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCE
Confidence 9999999999999999999998887 8899999999999999999999999998777 5667777763 4444332
Q ss_pred h-HHHHHHhhccCccc-------ccccchhhcCChhHHHHHhhcCCcccCCCcEEEEccCCHHHHHHHHHHHhh-C-CCc
Q 003913 646 Y-FCFYADKFWPKGRL-------VIPKLIHRWLTPRALAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKTLKA-R-SLD 715 (787)
Q Consensus 646 ~-~~~~~~g~~~~a~~-------~~~~mi~~gl~P~~lay~~m~~g~~~~~g~~~~~~~g~~~e~~~l~~~l~~-~-gl~ 715 (787)
. .....+..+++..+ +..+|.+.|..||... .+++.. +.....++.| .|-+.+.-.|-. . |-.
T Consensus 737 ~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~--~~~~~~-~~k~~~~~~h----se~la~a~~l~~~~~~~~ 809 (857)
T PLN03077 737 VHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESS--SMDEIE-VSKDDIFCGH----SERLAIAFGLINTVPGMP 809 (857)
T ss_pred EEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcch--hccccH-HHHHHHHHhc----cHHHHHHHhhhcCCCCCe
Confidence 2 22233344444433 4567788999998642 333321 1112223333 344444444443 3 877
Q ss_pred eEEEecCcEEEEEEeCCchHHHHHhcc
Q 003913 716 CRVKKKGRVFWIGFLGSNSTLFWKLIE 742 (787)
Q Consensus 716 ~~~~~~~~~~~i~~~~~~~~~~~~lv~ 742 (787)
.+|.|+ .|||-++|+..+|++.|.
T Consensus 810 i~i~kn---lr~c~dch~~~k~~s~~~ 833 (857)
T PLN03077 810 IWVTKN---LYMCENCHNTVKFISKIV 833 (857)
T ss_pred EEEeCC---CEeCccHHHHHHHHHHHh
Confidence 777777 799999999999998764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-65 Score=593.73 Aligned_cols=544 Identities=12% Similarity=0.109 Sum_probs=360.4
Q ss_pred HHHHhhccCCCcchhhHHHHHHhhccccCCcchHHHHH--HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHc
Q 003913 115 KLAWLCKELPSHKGGTLVRILNAQKKWLRQEDGTYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGK 192 (787)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~~~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 192 (787)
.+.-+++.+....+..+++.|...+ -+.++..++..+ .|.+.|.+++|+++|+.|.. ||..+|+.+|.+|++
T Consensus 376 ~y~~l~r~G~l~eAl~Lfd~M~~~g-vv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k 449 (1060)
T PLN03218 376 AYNRLLRDGRIKDCIDLLEDMEKRG-LLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCAS 449 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHh
Confidence 3444555566666666666655432 234555555444 66667777777777776643 577777777777777
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCC
Q 003913 193 ERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLS 272 (787)
Q Consensus 193 ~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~ 272 (787)
.|+++.|.++|++|.+.|+.||..+||+||.+|+ +.|++++|.++|++|.+. |+.||.+||+++|.+|++.
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~---k~G~vd~A~~vf~eM~~~-Gv~PdvvTynaLI~gy~k~----- 520 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCA---KSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARA----- 520 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---hCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHC-----
Confidence 7777777777777777777777777777777777 677777777777777765 6777777777777777765
Q ss_pred hhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCChHH
Q 003913 273 KYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQ--AGFEEGKEVLLSVLRVCAKEGDVED 350 (787)
Q Consensus 273 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~--~g~~p~~~t~~~li~~~~~~g~~~~ 350 (787)
|++++|.++|++|.+.|+.||..+|+.++ .+|++.|++++|.++|++|.. .|+.||.+||++||.+|++.|++++
T Consensus 521 -G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI--~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~lde 597 (1060)
T PLN03218 521 -GQVAKAFGAYGIMRSKNVKPDRVVFNALI--SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597 (1060)
T ss_pred -cCHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHH
Confidence 57777777777777777777777777777 667777777777777777765 4667777777777777777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003913 351 AEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVE 430 (787)
Q Consensus 351 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (787)
|.++|+.|.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+
T Consensus 598 A~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHH
Q 003913 431 TGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRS 509 (787)
Q Consensus 431 ~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t 509 (787)
.|+.||..+|++||.+|++.|++++|.++|++|.+ ++.||..+||+||.+|++.|++++|.++|++|.+.| +.||..|
T Consensus 678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G-i~Pd~~T 756 (1060)
T PLN03218 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG-LCPNTIT 756 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCCHHH
Confidence 77777777777777777777777777777777766 677777777777777777777777777777777776 6777777
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccch
Q 003913 510 CNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDE 589 (787)
Q Consensus 510 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~ 589 (787)
|++||.+|++.|++++|.++|++|.+.|+.++ ..+|++|++.|.. .+
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd-------------------------------~~tynsLIglc~~--~y 803 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPN-------------------------------LVMCRCITGLCLR--RF 803 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-------------------------------HHHHHHHHHHHHH--HH
Confidence 77777777777777777777777777665443 3445555544432 22
Q ss_pred hhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccccC--CCCCcceEEeeeccchHHHHHHhhccCcccccccc
Q 003913 590 KRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSD--GNDDIPYKYSTISHPYFCFYADKFWPKGRLVIPKL 665 (787)
Q Consensus 590 ~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~--~~~~~p~~~~t~~~~~~~~~~~g~~~~a~~~~~~m 665 (787)
+++....+ ..+++.+. +...+..++|...+.+ ..+..|+ ..|+..+.-.++..+....+..++..|
T Consensus 804 ~ka~~l~~~v~~f~~g~~---------~~~n~w~~~Al~lf~eM~~~Gi~Pd-~~T~~~vL~cl~~~~~~~~~~~m~~~m 873 (1060)
T PLN03218 804 EKACALGEPVVSFDSGRP---------QIENKWTSWALMVYRETISAGTLPT-MEVLSQVLGCLQLPHDATLRNRLIENL 873 (1060)
T ss_pred HHHhhhhhhhhhhhcccc---------ccccchHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccccHHHHHHHHHHh
Confidence 22222211 11111110 0001111223333321 1223343 334444333344444444555556666
Q ss_pred hhhcCChhHHHHHhhcCCcccCCCcEEEEccC-CHHHHHHHHHHHhhCCCceEEEecCcEEEEEEeCCch
Q 003913 666 IHRWLTPRALAYWFMYGGHRTSVGDILLKLKV-SSEGIALVFKTLKARSLDCRVKKKGRVFWIGFLGSNS 734 (787)
Q Consensus 666 i~~gl~P~~lay~~m~~g~~~~~g~~~~~~~g-~~~e~~~l~~~l~~~gl~~~~~~~~~~~~i~~~~~~~ 734 (787)
...+..|+..+|+++++|+ | ..++|..++++|...|+.|+++.+.. .+-++..+.
T Consensus 874 ~~~~~~~~~~~y~~Li~g~------------~~~~~~A~~l~~em~~~Gi~p~~~~~~~--~~~~d~~~~ 929 (1060)
T PLN03218 874 GISADSQKQSNLSTLVDGF------------GEYDPRAFSLLEEAASLGVVPSVSFKKS--PIVIDAEEL 929 (1060)
T ss_pred ccCCCCcchhhhHHHHHhh------------ccChHHHHHHHHHHHHcCCCCCcccccC--ceEEEcccC
Confidence 6667777788888888883 3 34789999999999999999987655 344555543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-64 Score=585.91 Aligned_cols=538 Identities=14% Similarity=0.125 Sum_probs=465.2
Q ss_pred CcchHHHHH--HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 003913 144 QEDGTYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHIL 221 (787)
Q Consensus 144 p~~~t~~~~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~l 221 (787)
++...|..+ .|++.|++++|+++|++|.+.|.++++..+++.++..|++.|.+++|..+|+.|.. ||..+||.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 344444444 77799999999999999999997788999999999999999999999999999975 899999999
Q ss_pred HHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHH
Q 003913 222 IVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGL 301 (787)
Q Consensus 222 i~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 301 (787)
|.+|+ +.|++++|.++|++|.+. |+.||.++|+++|.+|++. |++++|.++|++|.+.|+.||..+|+.+
T Consensus 444 L~a~~---k~g~~e~A~~lf~~M~~~-Gl~pD~~tynsLI~~y~k~------G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 444 MSVCA---SSQDIDGALRVLRLVQEA-GLKADCKLYTTLISTCAKS------GKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred HHHHH---hCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhC------cCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999 899999999999999997 8999999999999999987 7999999999999999999999999999
Q ss_pred HHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHH
Q 003913 302 IWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLE--SDNGIPTPAFVYKMEAYAK 379 (787)
Q Consensus 302 i~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~~~~li~~~~~ 379 (787)
| .+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|++
T Consensus 514 I--~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k 591 (1060)
T PLN03218 514 I--DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591 (1060)
T ss_pred H--HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 9 99999999999999999999999999999999999999999999999999999986 6789999999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003913 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLA 459 (787)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 459 (787)
.|++++|.++|++|.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|++.|++++|.++
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 003913 460 FSECLE-KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKY 538 (787)
Q Consensus 460 ~~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 538 (787)
|++|.+ ++.||..+|++||.+|+++|++++|.++|++|.+.| +.||..+|++||.+|++.|++++|.++|++|.+.|+
T Consensus 672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g-~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi 750 (1060)
T PLN03218 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK-LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 999998 999999999999999999999999999999999998 899999999999999999999999999999998885
Q ss_pred ccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE----EEEccCCcccHHHHHHH
Q 003913 539 EIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR----FQFNENSRMHSVLRRYL 614 (787)
Q Consensus 539 ~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~----~~~~p~~~~~~~~l~~~ 614 (787)
.| + ..+|++|+.+|++.|+++.|.+++. ..+.|+ ...|..|.++
T Consensus 751 ~P--d-----------------------------~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd-~~tynsLIgl 798 (1060)
T PLN03218 751 CP--N-----------------------------TITYSILLVASERKDDADVGLDLLSQAKEDGIKPN-LVMCRCITGL 798 (1060)
T ss_pred CC--C-----------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Confidence 44 3 6789999999999999999999887 455664 4456666666
Q ss_pred HH----HchhhcCCCccccCCCCCcceEEeeeccchHHHHHHhhccCcccccccchhhcCChhHHHHHhhcCCcccCCCc
Q 003913 615 YD----QYHEWLHPSFKVSDGNDDIPYKYSTISHPYFCFYADKFWPKGRLVIPKLIHRWLTPRALAYWFMYGGHRTSVGD 690 (787)
Q Consensus 615 y~----~~g~~~~A~~~~~~~~~~~p~~~~t~~~~~~~~~~~g~~~~a~~~~~~mi~~gl~P~~lay~~m~~g~~~~~g~ 690 (787)
|. +++...++...+..+ . .....++..+|..+|.+|++.|+.||..||..++++
T Consensus 799 c~~~y~ka~~l~~~v~~f~~g---~------------~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~c------- 856 (1060)
T PLN03218 799 CLRRFEKACALGEPVVSFDSG---R------------PQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGC------- 856 (1060)
T ss_pred HHHHHHHHhhhhhhhhhhhcc---c------------cccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-------
Confidence 43 333333322222110 0 111234556799999999999999999999999965
Q ss_pred EEEEccCCHHHHHHHHHHHhhCCCceEEEecCcEEE-EE-EeCCchHHHHHhcccccccccccccc
Q 003913 691 ILLKLKVSSEGIALVFKTLKARSLDCRVKKKGRVFW-IG-FLGSNSTLFWKLIEPYVLDELKEDLL 754 (787)
Q Consensus 691 ~~~~~~g~~~e~~~l~~~l~~~gl~~~~~~~~~~~~-i~-~~~~~~~~~~~lv~~~~~~~m~~k~~ 754 (787)
++..+..+.+..+++.|...+..+.......... .. ........|-+..+--|.|+..+|-.
T Consensus 857 --l~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~~~~~ 920 (1060)
T PLN03218 857 --LQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVSFKKS 920 (1060)
T ss_pred --hcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcccccC
Confidence 3344567777777777776666555433222111 00 12335556666677777788876433
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-65 Score=603.92 Aligned_cols=553 Identities=12% Similarity=0.070 Sum_probs=444.5
Q ss_pred hHhhhhCCChhhHHHhhhchhhH-------HHHHHHHhhccCCCcchhhHHHHHHhhccccCCcchHHHHH--HHhhcCC
Q 003913 89 SEMRHLGEPVVEVIELEELPEQW-------RRAKLAWLCKELPSHKGGTLVRILNAQKKWLRQEDGTYLAV--HCMRIRE 159 (787)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~w-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~~~--~~~~~~~ 159 (787)
..+.+.+..+.+..+|+.++... -..++....+.+....+..+...+... +..++...++.+ .+++.|+
T Consensus 59 ~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~n~li~~~~~~g~ 136 (857)
T PLN03077 59 RALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSS--HPSLGVRLGNAMLSMFVRFGE 136 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHc--CCCCCchHHHHHHHHHHhCCC
Confidence 34444455556666666554310 022344444445555555555554433 456777777666 6778888
Q ss_pred hhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHH
Q 003913 160 NETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACS 239 (787)
Q Consensus 160 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~ 239 (787)
++.|+++|++|.+ +|+.+||++|.+|++.|++++|+++|++|...|+.||.+||+++|.+|+ +.+++..+.+
T Consensus 137 ~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~---~~~~~~~~~~ 208 (857)
T PLN03077 137 LVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG---GIPDLARGRE 208 (857)
T ss_pred hHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhC---CccchhhHHH
Confidence 8888888888853 4778888888888888888888888888888888888888888888888 7888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHH
Q 003913 240 IYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLL 319 (787)
Q Consensus 240 l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l 319 (787)
++..|.+. |+.||..+||++|.+|++. |++++|.++|++|.. ||..+|+.++ .+|++.|+.++|+++
T Consensus 209 ~~~~~~~~-g~~~~~~~~n~Li~~y~k~------g~~~~A~~lf~~m~~----~d~~s~n~li--~~~~~~g~~~eAl~l 275 (857)
T PLN03077 209 VHAHVVRF-GFELDVDVVNALITMYVKC------GDVVSARLVFDRMPR----RDCISWNAMI--SGYFENGECLEGLEL 275 (857)
T ss_pred HHHHHHHc-CCCcccchHhHHHHHHhcC------CCHHHHHHHHhcCCC----CCcchhHHHH--HHHHhCCCHHHHHHH
Confidence 88888886 7888888888888888886 688999999988853 5677888888 888899999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 003913 320 KKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGS 399 (787)
Q Consensus 320 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 399 (787)
|++|.+.|+.||..||+++|.+|++.|+++.|.+++..|.+.|+.||..+||+||.+|+++|++++|.++|++|..
T Consensus 276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---- 351 (857)
T PLN03077 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---- 351 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHH
Q 003913 400 ASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYL 478 (787)
Q Consensus 400 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~~~~~li 478 (787)
||.++||+||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+ |..|+..+||+||
T Consensus 352 ~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li 431 (857)
T PLN03077 352 KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431 (857)
T ss_pred CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 688999999999999999999999999999999999999999999999999999999999999988 8899999999999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccc
Q 003913 479 ESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKE 558 (787)
Q Consensus 479 ~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~ 558 (787)
++|+++|++++|.++|++|.+ +|.++|++||.+|+++|+.++|+.+|++|.. + +.|+
T Consensus 432 ~~y~k~g~~~~A~~vf~~m~~-----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~--~~pd--------------- 488 (857)
T PLN03077 432 EMYSKCKCIDKALEVFHNIPE-----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-T--LKPN--------------- 488 (857)
T ss_pred HHHHHcCCHHHHHHHHHhCCC-----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-C--CCCC---------------
Confidence 999999999999999999864 4778999999999999999999999999985 4 3443
Q ss_pred cccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE----EEEccCCcccHHHHHHHHHHchhhcCCCccccCCCCC
Q 003913 559 VKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR----FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDD 634 (787)
Q Consensus 559 ~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~----~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~ 634 (787)
..+|.+++.+|+..|+++.+++++. .++.+ +...++.|.++|.++|++++|...+... .
T Consensus 489 --------------~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~-~~~~~naLi~~y~k~G~~~~A~~~f~~~-~- 551 (857)
T PLN03077 489 --------------SVTLIAALSACARIGALMCGKEIHAHVLRTGIGF-DGFLPNALLDLYVRCGRMNYAWNQFNSH-E- 551 (857)
T ss_pred --------------HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc-cceechHHHHHHHHcCCHHHHHHHHHhc-C-
Confidence 5777888888888888877777765 33333 4556667778888888888877777554 2
Q ss_pred cceEEeeeccchHHHHHHhhccCcccccccchhhcCChhHHHHHhhcCCcccCCCcEEEEccCCHHHHHHHHHHHhhC-C
Q 003913 635 IPYKYSTISHPYFCFYADKFWPKGRLVIPKLIHRWLTPRALAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKTLKAR-S 713 (787)
Q Consensus 635 ~p~~~~t~~~~~~~~~~~g~~~~a~~~~~~mi~~gl~P~~lay~~m~~g~~~~~g~~~~~~~g~~~e~~~l~~~l~~~-g 713 (787)
| +..+|+..+.+|+.+|..++|+++|.+|++.|+.||..||+.++.+ |++.|.++|+..+++.|..+ |
T Consensus 552 -~-d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a---------~~~~g~v~ea~~~f~~M~~~~g 620 (857)
T PLN03077 552 -K-DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA---------CSRSGMVTQGLEYFHSMEEKYS 620 (857)
T ss_pred -C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH---------HhhcChHHHHHHHHHHHHHHhC
Confidence 2 2445666666788888888888888888888888888888888877 66777888888888888744 8
Q ss_pred CceEEE
Q 003913 714 LDCRVK 719 (787)
Q Consensus 714 l~~~~~ 719 (787)
++|++.
T Consensus 621 i~P~~~ 626 (857)
T PLN03077 621 ITPNLK 626 (857)
T ss_pred CCCchH
Confidence 887753
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-64 Score=584.65 Aligned_cols=560 Identities=15% Similarity=0.122 Sum_probs=471.5
Q ss_pred HHHHHhhccCCCcchhhHHHHHHhhccccCCcchHHHHH--HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHH
Q 003913 114 AKLAWLCKELPSHKGGTLVRILNAQKKWLRQEDGTYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMG 191 (787)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~~~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 191 (787)
.++..+++.+....+..+++.|... .++.||..||+.+ +|++.++++.|.++|..|.+.| +.||..+||.|+++|+
T Consensus 92 ~~i~~l~~~g~~~~Al~~f~~m~~~-~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~Li~~y~ 169 (697)
T PLN03081 92 SQIEKLVACGRHREALELFEILEAG-CPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNRVLLMHV 169 (697)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHh
Confidence 5566677778888888888877643 2477999999888 8889999999999999999998 8899999999999999
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCC
Q 003913 192 KERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGL 271 (787)
Q Consensus 192 ~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~ 271 (787)
++|++++|.++|++|++ ||.++||++|.+|+ +.|++++|+++|++|.+. |+.||..||+.++.+|+..
T Consensus 170 k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~---~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~---- 237 (697)
T PLN03081 170 KCGMLIDARRLFDEMPE----RNLASWGTIIGGLV---DAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGL---- 237 (697)
T ss_pred cCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHH---HCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcC----
Confidence 99999999999999975 79999999999999 899999999999999986 8999999999999999986
Q ss_pred ChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 003913 272 SKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDA 351 (787)
Q Consensus 272 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 351 (787)
|.++.+.+++..+.+.|+.||..+|+.++ .+|++.|+.++|.++|++|. .+|.++||+||.+|++.|++++|
T Consensus 238 --~~~~~~~~l~~~~~~~g~~~d~~~~n~Li--~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA 309 (697)
T PLN03081 238 --GSARAGQQLHCCVLKTGVVGDTFVSCALI--DMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEA 309 (697)
T ss_pred --CcHHHHHHHHHHHHHhCCCccceeHHHHH--HHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHH
Confidence 68999999999999999999999999998 88999999999999999985 46899999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003913 352 EKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVET 431 (787)
Q Consensus 352 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 431 (787)
.++|++|.+.|+.||..||++++.+|++.|++++|.+++.+|.+.|+.||..+|++||.+|++.|++++|.++|++|.
T Consensus 310 ~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-- 387 (697)
T PLN03081 310 LCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-- 387 (697)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHH
Q 003913 432 GMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSC 510 (787)
Q Consensus 432 g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~ 510 (787)
.||..+||+||.+|++.|+.++|.++|++|.+ |+.||..||+++|.+|++.|.+++|.++|+.|.+...+.|+..+|
T Consensus 388 --~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y 465 (697)
T PLN03081 388 --RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY 465 (697)
T ss_pred --CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch
Confidence 47889999999999999999999999999988 999999999999999999999999999999998753389999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchh
Q 003913 511 NIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEK 590 (787)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~ 590 (787)
++|+.+|++.|++++|.+++++|. ..|+ ..+|++|+.+|+.+|+++
T Consensus 466 ~~li~~l~r~G~~~eA~~~~~~~~-----~~p~-----------------------------~~~~~~Ll~a~~~~g~~~ 511 (697)
T PLN03081 466 ACMIELLGREGLLDEAYAMIRRAP-----FKPT-----------------------------VNMWAALLTACRIHKNLE 511 (697)
T ss_pred HhHHHHHHhcCCHHHHHHHHHHCC-----CCCC-----------------------------HHHHHHHHHHHHHcCCcH
Confidence 999999999999999999988763 3444 678999999999999999
Q ss_pred hcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccc----cCCCCCcceE-EeeeccchHH-HHHHh-------hc
Q 003913 591 RKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKV----SDGNDDIPYK-YSTISHPYFC-FYADK-------FW 655 (787)
Q Consensus 591 ~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~----~~~~~~~p~~-~~t~~~~~~~-~~~~g-------~~ 655 (787)
.|+.+++ ++++|++...|+.|+++|++.|+|++|.+.+ .++..+.|.. |..+...... ...+. -+
T Consensus 512 ~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~ 591 (697)
T PLN03081 512 LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIY 591 (697)
T ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHH
Confidence 9999887 7889999999999999999999999998887 3555566653 4443211111 11222 23
Q ss_pred cCcccccccchhhcCChhHHHHHhhcCCcccCCCcEEEEccCCHHHHHHHHHHHhh-C-CCceEEEecCcEEEEEEeCCc
Q 003913 656 PKGRLVIPKLIHRWLTPRALAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKTLKA-R-SLDCRVKKKGRVFWIGFLGSN 733 (787)
Q Consensus 656 ~~a~~~~~~mi~~gl~P~~lay~~m~~g~~~~~g~~~~~~~g~~~e~~~l~~~l~~-~-gl~~~~~~~~~~~~i~~~~~~ 733 (787)
....++..+|.+.|..||.-.. +.|-.-+.....++.| .|-+.+.-.|-. . |-..+|.|+ .|||-++|+
T Consensus 592 ~~l~~l~~~~~~~gy~~~~~~~--~~~~~~~~~~~~~~~h----sekla~a~~l~~~~~~~~i~i~kn---lr~c~dch~ 662 (697)
T PLN03081 592 QKLDELMKEISEYGYVAEENEL--LPDVDEDEEKVSGRYH----SEKLAIAFGLINTSEWTPLQITQS---HRICKDCHK 662 (697)
T ss_pred HHHHHHHHHHHHcCCCCCcchh--hccccHHHHHHHHHhc----cHHHHHHhhCccCCCCCeEEEecC---CEECCCchh
Confidence 3334567788889999986432 2221101111122222 344444444443 3 777777777 899999999
Q ss_pred hHHHHHhcc
Q 003913 734 STLFWKLIE 742 (787)
Q Consensus 734 ~~~~~~lv~ 742 (787)
..+|++.|.
T Consensus 663 ~~k~~s~~~ 671 (697)
T PLN03081 663 VIKFIALVT 671 (697)
T ss_pred hHHHHhhhc
Confidence 999998764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-60 Score=553.91 Aligned_cols=519 Identities=14% Similarity=0.132 Sum_probs=463.3
Q ss_pred cchHHHHH--HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 003913 145 EDGTYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILI 222 (787)
Q Consensus 145 ~~~t~~~~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li 222 (787)
+..+++.+ .+.+.|++++|+++|++|...+.+.||..+|++++.+|++.++++.|..++..|.+.|+.||..+||.||
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 33444444 7788999999999999999876678999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHH
Q 003913 223 VAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLI 302 (787)
Q Consensus 223 ~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 302 (787)
.+|+ +.|++++|.++|++|. .||.++||++|.+|++. |++++|.++|++|.+.|+.|+..+|+.++
T Consensus 166 ~~y~---k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~------g~~~~A~~lf~~M~~~g~~p~~~t~~~ll 231 (697)
T PLN03081 166 LMHV---KCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDA------GNYREAFALFREMWEDGSDAEPRTFVVML 231 (697)
T ss_pred HHHh---cCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHC------cCHHHHHHHHHHHHHhCCCCChhhHHHHH
Confidence 9999 8999999999999995 38999999999999997 79999999999999999999999999998
Q ss_pred HHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 003913 303 WLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE 382 (787)
Q Consensus 303 ~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 382 (787)
.++++.|..+.+.+++..|.+.|+.||..+|++||++|++.|++++|.++|++|.+ +|+++||+||.+|++.|+
T Consensus 232 --~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~ 305 (697)
T PLN03081 232 --RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGY 305 (697)
T ss_pred --HHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCC
Confidence 88999999999999999999999999999999999999999999999999999964 488999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003913 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462 (787)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (787)
.++|.++|++|.+.|+.||..||+++|.+|++.|++++|.+++.+|.+.|+.||..+|++||++|+++|++++|.++|++
T Consensus 306 ~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~ 385 (697)
T PLN03081 306 SEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385 (697)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCH
Q 003913 463 CLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIES 542 (787)
Q Consensus 463 m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p 542 (787)
|. .||..+||+||.+|++.|+.++|+++|++|.+.| +.||.+||+++|.+|++.|++++|.++|+.|.+. +++.|
T Consensus 386 m~---~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g-~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~-~g~~p 460 (697)
T PLN03081 386 MP---RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG-VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN-HRIKP 460 (697)
T ss_pred CC---CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh-cCCCC
Confidence 96 5899999999999999999999999999999999 8999999999999999999999999999999862 33555
Q ss_pred HHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE-EEEccCCcccHHHHHHHHHHchhh
Q 003913 543 AWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR-FQFNENSRMHSVLRRYLYDQYHEW 621 (787)
Q Consensus 543 ~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~p~~~~~~~~l~~~y~~~g~~ 621 (787)
+ ..+|+.++.++++.|++++|.++++ ....| +...|..|.+.|...|++
T Consensus 461 ~-----------------------------~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p-~~~~~~~Ll~a~~~~g~~ 510 (697)
T PLN03081 461 R-----------------------------AMHYACMIELLGREGLLDEAYAMIRRAPFKP-TVNMWAALLTACRIHKNL 510 (697)
T ss_pred C-----------------------------ccchHhHHHHHHhcCCHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCc
Confidence 4 5789999999999999999999887 66666 455688899999999999
Q ss_pred cCCCccccCCCCCcceEEeeeccchHHHHHHhhccCcccccccchhhcCChhHHHHHhhcCCccc--CCCcEE-EEccCC
Q 003913 622 LHPSFKVSDGNDDIPYKYSTISHPYFCFYADKFWPKGRLVIPKLIHRWLTPRALAYWFMYGGHRT--SVGDIL-LKLKVS 698 (787)
Q Consensus 622 ~~A~~~~~~~~~~~p~~~~t~~~~~~~~~~~g~~~~a~~~~~~mi~~gl~P~~lay~~m~~g~~~--~~g~~~-~~~~g~ 698 (787)
+.|...+++..+..|....+|...+..|+..|.+++|.+++..|.++|+.+..-.=|+-+++... ..|+.. -....-
T Consensus 511 ~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i 590 (697)
T PLN03081 511 ELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREI 590 (697)
T ss_pred HHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHH
Confidence 99888887777888887788888889999999999999999999999997554444544443210 111110 111123
Q ss_pred HHHHHHHHHHHhhCCCceEE
Q 003913 699 SEGIALVFKTLKARSLDCRV 718 (787)
Q Consensus 699 ~~e~~~l~~~l~~~gl~~~~ 718 (787)
++....+...|+..|..|..
T Consensus 591 ~~~l~~l~~~~~~~gy~~~~ 610 (697)
T PLN03081 591 YQKLDELMKEISEYGYVAEE 610 (697)
T ss_pred HHHHHHHHHHHHHcCCCCCc
Confidence 45566777777777887763
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-27 Score=285.01 Aligned_cols=519 Identities=13% Similarity=0.047 Sum_probs=405.3
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g 232 (787)
.+.+.|++++|.++|+.+.+.. +.+...+..+...+...|++++|.+.|+.+.+.... +...+..++..+. +.|
T Consensus 372 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~---~~~ 445 (899)
T TIGR02917 372 AYLALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYL---RSG 445 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHH---hcC
Confidence 5667788888888888777664 446667777777777888888888888877765422 2345556666777 788
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCC
Q 003913 233 CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNID 312 (787)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~ 312 (787)
++++|+.+++++... .+++..++..+...+... |++++|...|+++.+.... +...+..+. ..+...|+
T Consensus 446 ~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~a~~~~~~-~~~~~~~la--~~~~~~g~ 514 (899)
T TIGR02917 446 QFDKALAAAKKLEKK--QPDNASLHNLLGAIYLGK------GDLAKAREAFEKALSIEPD-FFPAAANLA--RIDIQEGN 514 (899)
T ss_pred CHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHhC------CCHHHHHHHHHHHHhhCCC-cHHHHHHHH--HHHHHCCC
Confidence 888888888888763 455666777777777765 6899999999988876533 233333333 66778888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003913 313 KERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFRE 392 (787)
Q Consensus 313 ~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 392 (787)
+++|.+.|+++.... +.+..++..+...+.+.|+.++|..+++++.+.+.. +...+..++..|.+.|++++|..++++
T Consensus 515 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 592 (899)
T TIGR02917 515 PDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNE 592 (899)
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999888753 336678888889999999999999999998877643 567788899999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 003913 393 MQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRT 472 (787)
Q Consensus 393 m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~ 472 (787)
+.+. .+.+..+|..+..+|...|++++|...++++.+.. +.+...+..+..+|.+.|++++|..+|+.+.+..+.+..
T Consensus 593 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 670 (899)
T TIGR02917 593 AADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTE 670 (899)
T ss_pred HHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Confidence 8875 34577889999999999999999999999998754 446778889999999999999999999999887677889
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 003913 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVL 552 (787)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~ 552 (787)
+|..++..+...|++++|.++++.+.+.+ +++...+..+...+.+.|++++|.+.|+++.+.+ +++..+..+..++
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 746 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRAL 746 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHH
Confidence 99999999999999999999999999885 5678888999999999999999999999998754 4444433333332
Q ss_pred hhcccc------cccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCC
Q 003913 553 SLNRKE------VKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHP 624 (787)
Q Consensus 553 ~l~~~~------~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A 624 (787)
...... +..... ..+. +..++..+...+...|+.+.|...++ ++..|+++..+..++.+|...|+ .+|
T Consensus 747 ~~~g~~~~A~~~~~~~l~-~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A 822 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLK-THPN--DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRA 822 (899)
T ss_pred HHCCCHHHHHHHHHHHHH-hCCC--CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHH
Confidence 211110 000000 0111 35778888889999999999999988 77889999999999999999999 888
Q ss_pred CccccCCCCCcceEEeeeccchHHHHHHhhccCcccccccchhhcCChhHHHHHhhcCCcccCCCcEEEEccCCHHHHHH
Q 003913 625 SFKVSDGNDDIPYKYSTISHPYFCFYADKFWPKGRLVIPKLIHRWLTPRALAYWFMYGGHRTSVGDILLKLKVSSEGIAL 704 (787)
Q Consensus 625 ~~~~~~~~~~~p~~~~t~~~~~~~~~~~g~~~~a~~~~~~mi~~gl~P~~lay~~m~~g~~~~~g~~~~~~~g~~~e~~~ 704 (787)
...+.+.....|.....+...+..+...|.+++|.+.+.++++.+.. +..+|..+... +...|..+++..
T Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~---------~~~~g~~~~A~~ 892 (899)
T TIGR02917 823 LEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALA---------LLATGRKAEARK 892 (899)
T ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHH---------HHHcCCHHHHHH
Confidence 88888888888877777777778889999999999999999987654 67777777777 445599999999
Q ss_pred HHHHHh
Q 003913 705 VFKTLK 710 (787)
Q Consensus 705 l~~~l~ 710 (787)
+++.|.
T Consensus 893 ~~~~~~ 898 (899)
T TIGR02917 893 ELDKLL 898 (899)
T ss_pred HHHHHh
Confidence 998874
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-25 Score=272.67 Aligned_cols=546 Identities=12% Similarity=0.024 Sum_probs=385.7
Q ss_pred hhHhhhhCCChhhHHHhhhchh-------hHHHHHHHHhhccCCCcchhhHHHHHHhhccccCCcchHHH-HH--HHhhc
Q 003913 88 GSEMRHLGEPVVEVIELEELPE-------QWRRAKLAWLCKELPSHKGGTLVRILNAQKKWLRQEDGTYL-AV--HCMRI 157 (787)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~-------~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~-~~--~~~~~ 157 (787)
.......+..+.+...+..... .| ..+...+...+..+.+..+++.... ..|+..... .+ .+...
T Consensus 336 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~ 410 (899)
T TIGR02917 336 ASIQLRLGRVDEAIATLSPALGLDPDDPAAL-SLLGEAYLALGDFEKAAEYLAKATE----LDPENAAARTQLGISKLSQ 410 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHhC
Confidence 3445556666666666655421 11 1222333445555556555554432 234433222 22 55677
Q ss_pred CChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHH
Q 003913 158 RENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEA 237 (787)
Q Consensus 158 ~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A 237 (787)
|++++|.+.++.+.+.. +........++..+.+.|++++|..+++.+.... .++..+|+.+...+. ..|++++|
T Consensus 411 ~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~---~~~~~~~A 484 (899)
T TIGR02917 411 GDPSEAIADLETAAQLD--PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYL---GKGDLAKA 484 (899)
T ss_pred CChHHHHHHHHHHHhhC--CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHH---hCCCHHHH
Confidence 88888888888887765 3344556667778888888888888888887653 346677888888887 78888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHH
Q 003913 238 CSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERIS 317 (787)
Q Consensus 238 ~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~ 317 (787)
.+.|+++.+. -+.+...+..+...+... |++++|..+++.+...+.. +..++..+. ..+...|+.++|.
T Consensus 485 ~~~~~~a~~~--~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~~~~~~~~-~~~~~~~l~--~~~~~~~~~~~A~ 553 (899)
T TIGR02917 485 REAFEKALSI--EPDFFPAAANLARIDIQE------GNPDDAIQRFEKVLTIDPK-NLRAILALA--GLYLRTGNEEEAV 553 (899)
T ss_pred HHHHHHHHhh--CCCcHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCcC-cHHHHHHHH--HHHHHcCCHHHHH
Confidence 8888888763 222334455555555554 5888888888888776542 344444444 6666778888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 003913 318 LLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERL 397 (787)
Q Consensus 318 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 397 (787)
..++++.+.+ +.+...+..+...|.+.|++++|..+++.+.+... .+..+|..+..+|.+.|++++|...|+++.+..
T Consensus 554 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 631 (899)
T TIGR02917 554 AWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631 (899)
T ss_pred HHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888887653 33556677788888888888888888888876553 366778888888888888888888888887653
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 003913 398 GSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIY 477 (787)
Q Consensus 398 ~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~l 477 (787)
+.+...+..+...+.+.|++++|..+++++.+.. +.+..++..++..+...|++++|..+++.+.+..+.+...+..+
T Consensus 632 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 709 (899)
T TIGR02917 632 -PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELE 709 (899)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHH
Confidence 3356677788888888888888888888887643 44577888888888888888888888888877666777788888
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhccc
Q 003913 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRK 557 (787)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~ 557 (787)
...|.+.|++++|.+.|+++...+ |+..++..+..++.+.|++++|.+.++++.+.. +.++..+..+..+.....+
T Consensus 710 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~ 785 (899)
T TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKRA---PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKD 785 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC---CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 888888888888888888888764 555777778888888888888888888887632 2333333333332221111
Q ss_pred c------cccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCcccc
Q 003913 558 E------VKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVS 629 (787)
Q Consensus 558 ~------~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 629 (787)
. .+..... .+ .+..++..+...+...|+ .+|...++ +.+.|+++..+..++.+|...|++++|...+.
T Consensus 786 ~~~A~~~~~~~~~~--~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 861 (899)
T TIGR02917 786 YDKAIKHYRTVVKK--AP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLR 861 (899)
T ss_pred HHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 0 0000011 11 136788889999999998 77888877 78889999999999999999999999999999
Q ss_pred CCCCCcceEEeeeccchHHHHHHhhccCcccccccchh
Q 003913 630 DGNDDIPYKYSTISHPYFCFYADKFWPKGRLVIPKLIH 667 (787)
Q Consensus 630 ~~~~~~p~~~~t~~~~~~~~~~~g~~~~a~~~~~~mi~ 667 (787)
++....|....++...+..+...|.+++|++++.+|++
T Consensus 862 ~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 862 KAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 99988888777888888899999999999999988763
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=194.61 Aligned_cols=446 Identities=12% Similarity=0.075 Sum_probs=262.4
Q ss_pred HhhccCCCcchhhHHHHHHhhccccCCcchHHHHHHHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChh
Q 003913 118 WLCKELPSHKGGTLVRILNAQKKWLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFA 197 (787)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 197 (787)
-.-+++...+++....++-.+. ....+..-..........+.+...+--....+.. +.-..+|..+...+-..|++.
T Consensus 57 ~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~kerg~~~ 133 (966)
T KOG4626|consen 57 RLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKERGQLQ 133 (966)
T ss_pred HHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHhchHH
Confidence 3445566666666555554332 1111111111113334445555444444444432 345678888899999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHH
Q 003913 198 KCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQ 277 (787)
Q Consensus 198 ~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~ 277 (787)
+|+.+++.+.+.... .+..|..+-.++. ..|+.+.|.+.|.+..+ +.|+.+...+-+.-+.+.. |++.
T Consensus 134 ~al~~y~~aiel~p~-fida~inla~al~---~~~~~~~a~~~~~~alq---lnP~l~ca~s~lgnLlka~-----Grl~ 201 (966)
T KOG4626|consen 134 DALALYRAAIELKPK-FIDAYINLAAALV---TQGDLELAVQCFFEALQ---LNPDLYCARSDLGNLLKAE-----GRLE 201 (966)
T ss_pred HHHHHHHHHHhcCch-hhHHHhhHHHHHH---hcCCCcccHHHHHHHHh---cCcchhhhhcchhHHHHhh-----cccc
Confidence 999999999886432 5678888888888 78999999999998887 6788877766666666554 4777
Q ss_pred HHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHH
Q 003913 278 QAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG-KEVLLSVLRVCAKEGDVEDAEKTWL 356 (787)
Q Consensus 278 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~ 356 (787)
+|...+.+.++....- ...++-| +..+...|+...|+.-|++..+ +.|+ ...|-.|-..|...+.++.|...+.
T Consensus 202 ea~~cYlkAi~~qp~f-AiawsnL--g~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~ 276 (966)
T KOG4626|consen 202 EAKACYLKAIETQPCF-AIAWSNL--GCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYL 276 (966)
T ss_pred hhHHHHHHHHhhCCce-eeeehhc--chHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHH
Confidence 7777777766543210 1112222 2444555666666666665554 3444 2355566666666666666666665
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003913 357 RLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS-VPAYHKIIELLCKAEETELTESLMKEFVETGMKP 435 (787)
Q Consensus 357 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 435 (787)
+.....+. ..+++..|...|-..|.++-|+..|++.++. .|+ ...|+.|..++-..|++.+|.+.+.+.+.. .|
T Consensus 277 rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p 351 (966)
T KOG4626|consen 277 RALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CP 351 (966)
T ss_pred HHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CC
Confidence 55544321 3445555555566666666666666665553 333 345666666666666666666666665552 23
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-HHHHHHH
Q 003913 436 L-MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN-TRSCNII 513 (787)
Q Consensus 436 ~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~-~~t~~~l 513 (787)
+ ..+.+.|...|...|.+++|..+|....+-.+--...+|.|...|-++|++++|+..+++.++. .|+ ..+|+.+
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI---~P~fAda~~Nm 428 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI---KPTFADALSNM 428 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc---CchHHHHHHhc
Confidence 3 4455666666666666666666666655533333455666666666666666666666666553 344 3456666
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcc
Q 003913 514 LSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKR 593 (787)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~ 593 (787)
...|-..|+++.|+..+.+.++ ++|.. +...+.|...+...|++.+|+
T Consensus 429 Gnt~ke~g~v~~A~q~y~rAI~----~nPt~----------------------------AeAhsNLasi~kDsGni~~AI 476 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRAIQ----INPTF----------------------------AEAHSNLASIYKDSGNIPEAI 476 (966)
T ss_pred chHHHHhhhHHHHHHHHHHHHh----cCcHH----------------------------HHHHhhHHHHhhccCCcHHHH
Confidence 6666666666666666666554 55553 455556666666666666666
Q ss_pred eeEE--EEEccCCcccHHHHHHHHHHchhhcC
Q 003913 594 HMIR--FQFNENSRMHSVLRRYLYDQYHEWLH 623 (787)
Q Consensus 594 ~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~ 623 (787)
..++ +.++|+.+.+|-.+.+...---+|.+
T Consensus 477 ~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 477 QSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 6655 56666666666555555444444444
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-18 Score=211.70 Aligned_cols=393 Identities=9% Similarity=-0.002 Sum_probs=231.5
Q ss_pred hhhccCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHH-----------
Q 003913 305 HSYQDNIDKERISLLKKEMQQAGFEE-GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIP-TPAFV----------- 371 (787)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~----------- 371 (787)
..+...|++++|+..|++..+. .| +..++..+..++.+.|++++|...|++..+...... ...|.
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 4456677888888888877764 34 566777777888888888888888888777654321 11121
Q ss_pred -HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003913 372 -YKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL 450 (787)
Q Consensus 372 -~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 450 (787)
.+...+.+.|++++|...|++..... +.+...+..+...+...|++++|.+.|+++.+.. +.+..++..+...|. .
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-h
Confidence 12445667788888888888887653 2355666777788888888888888888877642 223444444444432 2
Q ss_pred CCHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCC
Q 003913 451 GMHDRLHLAFSECLEKC---------RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSG 521 (787)
Q Consensus 451 g~~~~a~~~~~~m~~~~---------~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g 521 (787)
+..++|...++.+.... ......+..+...+...|++++|++.|++..+.. +-+...+..+...|.+.|
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC
Confidence 23444444433322100 0001122333444444555555555555555442 223444445555555555
Q ss_pred CHHHHHHHHHHHHHcCCccCHHHHHHHHHH--------------------------------------Hhhccccc----
Q 003913 522 DFVKAEKIYDLMCLKKYEIESAWMEKLDYV--------------------------------------LSLNRKEV---- 559 (787)
Q Consensus 522 ~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~--------------------------------------~~l~~~~~---- 559 (787)
++++|+..++++.+.. +-+|...-.+... +.+.+.+.
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 5555555555554311 1122211000000 00000000
Q ss_pred --c--cccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccccCCCC
Q 003913 560 --K--KPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGND 633 (787)
Q Consensus 560 --~--~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~ 633 (787)
+ ..+. ..+. +...+..|...+...|+.+.|+..++ +..+|+++.++..++.+|...|++++|...+.....
T Consensus 589 ~~eA~~~l~-~~p~--~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 589 EAEAEALLR-QQPP--STRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHHHH-hCCC--CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 0 0000 0011 23456677888899999999999988 788999999999999999999999999999987777
Q ss_pred CcceEEeeeccchHHHHHHhhccCcccccccchhhcC--Ch---hHHHHHhhcCCcccCCCcEEEEccCCHHHHHHHHHH
Q 003913 634 DIPYKYSTISHPYFCFYADKFWPKGRLVIPKLIHRWL--TP---RALAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKT 708 (787)
Q Consensus 634 ~~p~~~~t~~~~~~~~~~~g~~~~a~~~~~~mi~~gl--~P---~~lay~~m~~g~~~~~g~~~~~~~g~~~e~~~l~~~ 708 (787)
..|............+...|.+++|.+++.+.+...- .| +.+.+.-+.+- ....|..++|...+..
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~---------~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARF---------EAQTGQPQQALETYKD 736 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHH---------HHHcCCHHHHHHHHHH
Confidence 7777666666667778888999999999999886532 22 22222212111 2334778888877665
Q ss_pred Hhh-CCCceE
Q 003913 709 LKA-RSLDCR 717 (787)
Q Consensus 709 l~~-~gl~~~ 717 (787)
-.. .|+.|.
T Consensus 737 Al~~~~~~~~ 746 (1157)
T PRK11447 737 AMVASGITPT 746 (1157)
T ss_pred HHhhcCCCCC
Confidence 543 366654
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-17 Score=203.32 Aligned_cols=566 Identities=11% Similarity=0.008 Sum_probs=363.0
Q ss_pred hhhHHHHHHHHhhccCCCcchhhHHHHHHhhccccCCcchHHHH---HHHhhcCChhHHHHHHHHHHhcCCCccCHHHH-
Q 003913 108 PEQWRRAKLAWLCKELPSHKGGTLVRILNAQKKWLRQEDGTYLA---VHCMRIRENETGFRVYEWMMQQHWYRFDFALA- 183 (787)
Q Consensus 108 ~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~~---~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~- 183 (787)
|.+|--..+...-..++.+.+...+..+.. +.|+...... ..+.+.|+.++|.+.++...+.. +.+....
T Consensus 27 ~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~----~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~ 100 (1157)
T PRK11447 27 AQQQLLEQVRLGEATHREDLVRQSLYRLEL----IDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRS 100 (1157)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHc----cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHH
Confidence 344433333322334444444444444432 4454433322 26668899999999999888875 3333322
Q ss_pred ---------------HHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHH-HHHHHhcCCcCCCHHHHHHHHHHHHHh
Q 003913 184 ---------------TKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHI-LIVAYLSAPVQGCLDEACSIYNRMIQL 247 (787)
Q Consensus 184 ---------------~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~-li~~~~~~~~~g~~~~A~~l~~~m~~~ 247 (787)
..+...+.+.|++++|.+.|+...+.+ |+...... ....... ..|+.++|++.|+++.+.
T Consensus 101 ~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~--p~~~~la~~y~~~~~~--~~g~~~~A~~~L~~ll~~ 176 (1157)
T PRK11447 101 SRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA--PPELDLAVEYWRLVAK--LPAQRPEAINQLQRLNAD 176 (1157)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC--CCChHHHHHHHHHHhh--CCccHHHHHHHHHHHHHh
Confidence 233446788899999999999988753 33322222 2222221 358899999999998874
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHH-----------------HhhhccC
Q 003913 248 GGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIW-----------------LHSYQDN 310 (787)
Q Consensus 248 ~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~-----------------~~~~~~~ 310 (787)
.|+.......+..+.... |+.++|...++++...........-.++-. +..+-..
T Consensus 177 ---~P~~~~~~~~LA~ll~~~-----g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~ 248 (1157)
T PRK11447 177 ---YPGNTGLRNTLALLLFSS-----GRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDG 248 (1157)
T ss_pred ---CCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCc
Confidence 465444333333333322 588899999998876432110000000000 0111222
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 003913 311 IDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIF 390 (787)
Q Consensus 311 g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 390 (787)
.....|...+.++....-.|+... .....++...|++++|...|++.++..+. +..++..|...|.+.|++++|+..|
T Consensus 249 ~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l 326 (1157)
T PRK11447 249 DSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQF 326 (1157)
T ss_pred hHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 223445555555444333333222 23345677899999999999999987653 7788999999999999999999999
Q ss_pred HHHHHcCCCC-CHHHHH------------HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003913 391 REMQERLGSA-SVPAYH------------KIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLH 457 (787)
Q Consensus 391 ~~m~~~g~~p-~~~t~~------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 457 (787)
++..+..... +...|. .....+.+.|++++|...|+++++.. +.+...+..+...|...|++++|+
T Consensus 327 ~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~ 405 (1157)
T PRK11447 327 EKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAE 405 (1157)
T ss_pred HHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 9988753221 112222 22346778999999999999999864 345778888999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-------CCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 003913 458 LAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTI-------GVNTRSCNIILSAYLSSGDFVKAEKIY 530 (787)
Q Consensus 458 ~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-------~p~~~t~~~li~~~~~~g~~~~A~~~~ 530 (787)
+.|+++++..+.+...+..+...|. .++.++|+.+++.+.....- .-....+..+...+...|++++|++.|
T Consensus 406 ~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~ 484 (1157)
T PRK11447 406 RYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQ 484 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999866777888888888885 46789999999876543200 001234566778889999999999999
Q ss_pred HHHHHcCCccCHHHHHHHHHHH----------hhcccccccccccCCchHH-----------------------------
Q 003913 531 DLMCLKKYEIESAWMEKLDYVL----------SLNRKEVKKPVSLNLSSEQ----------------------------- 571 (787)
Q Consensus 531 ~~m~~~g~~~~p~~~~~l~~~~----------~l~~~~~~~~~~~~l~~~~----------------------------- 571 (787)
++.++.. +-+|...-.+..++ ...++.++ ..+-.++.
T Consensus 485 ~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~---~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~ 560 (1157)
T PRK11447 485 RQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQ---QKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQW 560 (1157)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhc
Confidence 9999732 11222222222211 11111111 00000000
Q ss_pred -----------HHHHHHHHhhhhhhccchhhcceeEEEEEccCCcccHHHHHHHHHHchhhcCCCccccCCCCCcceEEe
Q 003913 572 -----------RENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPYKYS 640 (787)
Q Consensus 572 -----------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~~~~ 640 (787)
....+..+...+...|+.+.|..+++ ..|.++..+..++.+|.+.|++++|...+.+.....|.+..
T Consensus 561 ~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~--~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~ 638 (1157)
T PRK11447 561 NSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR--QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNAD 638 (1157)
T ss_pred ChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH--hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 00011223445666677777776655 57888889999999999999999999999999998998877
Q ss_pred eeccchHHHHHHhhccCcccccccchhhcCChhHHHHHh-hcCCcccCCCcEEEEccCCHHHHHHHHHHHhhC
Q 003913 641 TISHPYFCFYADKFWPKGRLVIPKLIHRWLTPRALAYWF-MYGGHRTSVGDILLKLKVSSEGIALVFKTLKAR 712 (787)
Q Consensus 641 t~~~~~~~~~~~g~~~~a~~~~~~mi~~gl~P~~lay~~-m~~g~~~~~g~~~~~~~g~~~e~~~l~~~l~~~ 712 (787)
.+...+..+...|.+++|++.+.+.+.. .|+....+. +... ....|..+++..+++.+...
T Consensus 639 a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~---------~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 639 ARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALA---------WAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHH---------HHhCCCHHHHHHHHHHHhhh
Confidence 8888888899999999999999987753 454433222 2222 22348899999999987654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-18 Score=189.07 Aligned_cols=234 Identities=13% Similarity=0.066 Sum_probs=193.1
Q ss_pred HhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHH
Q 003913 304 LHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT----PAFVYKMEAYAK 379 (787)
Q Consensus 304 ~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~ 379 (787)
+..+.+.|++++|..+|+++.+. -.++..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 35666777788888888877764 2345678889999999999999999999999887654322 245667888899
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003913 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLA 459 (787)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 459 (787)
.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+-.....+++.++.+|++.|++++|...
T Consensus 193 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (389)
T PRK11788 193 RGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF 271 (389)
T ss_pred CCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998763 2346678888899999999999999999998754222256788999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHc
Q 003913 460 FSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS---SGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 460 ~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~---~g~~~~A~~~~~~m~~~ 536 (787)
++.+.+. .|+...+..++..|.+.|++++|..+|+++.+. .|+..+++.++..+.. .|+.++|+.++++|.++
T Consensus 272 l~~~~~~-~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 272 LRRALEE-YPGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHHHh-CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 9998874 456677799999999999999999999999886 4899999999988775 56999999999999998
Q ss_pred CCccCHH
Q 003913 537 KYEIESA 543 (787)
Q Consensus 537 g~~~~p~ 543 (787)
++.++|+
T Consensus 348 ~~~~~p~ 354 (389)
T PRK11788 348 QLKRKPR 354 (389)
T ss_pred HHhCCCC
Confidence 8888887
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-17 Score=180.66 Aligned_cols=305 Identities=12% Similarity=0.142 Sum_probs=207.8
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC---HhHHHHHHHHHhcCC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPS---EMTFHILIVAYLSAP 229 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd---~~ty~~li~~~~~~~ 229 (787)
.....|+++.|...|..+.+.+ +.+..++..+...+.+.|++++|..+++.+...+..++ ...|..+...|.
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~--- 118 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL--- 118 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH---
Confidence 4446677788888888887764 45566777777777888888888888887776532221 245667777777
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhcc
Q 003913 230 VQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQD 309 (787)
Q Consensus 230 ~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 309 (787)
+.|++++|+.+|+++.+. -.++..+++.+...+... |++++|.+.++.+.+.+..+....
T Consensus 119 ~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~------------ 178 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQE------KDWQKAIDVAERLEKLGGDSLRVE------------ 178 (389)
T ss_pred HCCCHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHh------chHHHHHHHHHHHHHhcCCcchHH------------
Confidence 678888888888887763 234456666666666664 577777777777665443221100
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003913 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEI 389 (787)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 389 (787)
....+..+...+.+.|++++|.+.++++.+.... +...+..+...|.+.|++++|.++
T Consensus 179 ---------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~ 236 (389)
T PRK11788 179 ---------------------IAHFYCELAQQALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEA 236 (389)
T ss_pred ---------------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 0112345566667777777777777777765432 455666777788888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003913 390 FREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP 469 (787)
Q Consensus 390 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p 469 (787)
|+++...+......+++.++.+|+..|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|
T Consensus 237 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~-~P 313 (389)
T PRK11788 237 LERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR-HP 313 (389)
T ss_pred HHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh-Cc
Confidence 888776532222456777778888888888888888887764 456566677788888888888888888877653 57
Q ss_pred CHHHHHHHHHHHHh---cCCHHHHHHHHHHhhhCCCCCCCHH
Q 003913 470 NRTIYGIYLESLKN---AGNIEKAEEIFNHMHSDQTIGVNTR 508 (787)
Q Consensus 470 ~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~~~~~p~~~ 508 (787)
+..+++.++..+.. .|+.++|..+|++|.+++ ++|+..
T Consensus 314 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~-~~~~p~ 354 (389)
T PRK11788 314 SLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ-LKRKPR 354 (389)
T ss_pred CHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH-HhCCCC
Confidence 77778877777664 457888888888888766 555554
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-17 Score=171.28 Aligned_cols=367 Identities=14% Similarity=0.119 Sum_probs=303.2
Q ss_pred HHHHH--HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 003913 148 TYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAY 225 (787)
Q Consensus 148 t~~~~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~ 225 (787)
+|.-+ .+...|+++.|+.+++.+++.. +..+..|..+..+|...|+.+.|...|.+..+. .|+.+...+-+..+
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHH
Confidence 44433 6778899999999999999975 557788999999999999999999999998874 58888877777777
Q ss_pred hcCCcCCCHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 003913 226 LSAPVQGCLDEACSIYNRMIQLGGYQPRPS-LHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWL 304 (787)
Q Consensus 226 ~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 304 (787)
.+ ..|++.+|-..|.+.++ ..|... .|+.|-..+-. . |+...|.+.|++.++.++.- .+.|--|-
T Consensus 194 lk--a~Grl~ea~~cYlkAi~---~qp~fAiawsnLg~~f~~-~-----Gei~~aiq~y~eAvkldP~f-~dAYiNLG-- 259 (966)
T KOG4626|consen 194 LK--AEGRLEEAKACYLKAIE---TQPCFAIAWSNLGCVFNA-Q-----GEIWLAIQHYEEAVKLDPNF-LDAYINLG-- 259 (966)
T ss_pred HH--hhcccchhHHHHHHHHh---hCCceeeeehhcchHHhh-c-----chHHHHHHHHHHhhcCCCcc-hHHHhhHH--
Confidence 65 58999999999999987 356533 34444333332 2 79999999999999876431 23444443
Q ss_pred hhhccCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 003913 305 HSYQDNIDKERISLLKKEMQQAGFEEG-KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEF 383 (787)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 383 (787)
..|...+.+++|...|.+... ..|+ .+++..+...|-..|.+|.|...+++.++..+. -...|+.|..++-..|++
T Consensus 260 nV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V 336 (966)
T KOG4626|consen 260 NVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSV 336 (966)
T ss_pred HHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccch
Confidence 677778889999998887765 4676 467888888999999999999999999988754 468999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003913 384 MKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL-MPSYINLTNMYLNLGMHDRLHLAFSE 462 (787)
Q Consensus 384 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (787)
.+|...|.+...-.. -...+.+.|..+|...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|...|++
T Consensus 337 ~ea~~cYnkaL~l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yke 413 (966)
T KOG4626|consen 337 TEAVDCYNKALRLCP-NHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKE 413 (966)
T ss_pred HHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHH
Confidence 999999999887522 2356788999999999999999999999887 4554 56899999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCH
Q 003913 463 CLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIES 542 (787)
Q Consensus 463 m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p 542 (787)
.++-.+.-..+|+.+...|-..|+++.|.+.+.+.+..+ +.-...++.|...|-.+|+..+|+.-|+..++ ++|
T Consensus 414 alrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk----lkP 487 (966)
T KOG4626|consen 414 ALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK----LKP 487 (966)
T ss_pred HHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc----cCC
Confidence 987434446799999999999999999999999999864 33467999999999999999999999999986 777
Q ss_pred HH
Q 003913 543 AW 544 (787)
Q Consensus 543 ~~ 544 (787)
|.
T Consensus 488 Df 489 (966)
T KOG4626|consen 488 DF 489 (966)
T ss_pred CC
Confidence 74
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.4e-15 Score=168.20 Aligned_cols=368 Identities=11% Similarity=0.057 Sum_probs=261.3
Q ss_pred HhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCC
Q 003913 154 CMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGC 233 (787)
Q Consensus 154 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~ 233 (787)
+.+.|+++.|...|+..++. .|+...|..+..+|.+.|++++|++.++...+.... +...|..+-.+|. ..|+
T Consensus 137 ~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~---~lg~ 209 (615)
T TIGR00990 137 AYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD---GLGK 209 (615)
T ss_pred HHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH---HcCC
Confidence 34567777777777776654 345556666666777777777777777776664311 3445666666666 5677
Q ss_pred HHHHHHHHHHHHHhCCCC---------------------------CC----HHHHHHHHHHHH---------c---C---
Q 003913 234 LDEACSIYNRMIQLGGYQ---------------------------PR----PSLHNSLFRALV---------S---K--- 267 (787)
Q Consensus 234 ~~~A~~l~~~m~~~~g~~---------------------------pd----~~t~~~ll~~~~---------~---~--- 267 (787)
+++|+..|......++.. |. .......+..+- . .
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEE 289 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccc
Confidence 777765554332211111 11 000000000000 0 0
Q ss_pred CCC------------CChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCC-HHH
Q 003913 268 PGG------------LSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG-KEV 334 (787)
Q Consensus 268 ~~~------------~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t 334 (787)
.+. -..+.+++|...|+..++.+.........+...+..+...|++++|...|++..+. .|+ ...
T Consensus 290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~ 367 (615)
T TIGR00990 290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQS 367 (615)
T ss_pred cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHH
Confidence 000 00146889999999998876221233344445557788899999999999998874 565 557
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003913 335 LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCK 414 (787)
Q Consensus 335 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 414 (787)
|..+...+...|++++|...|++..+.... +..+|..+...|...|++++|...|++..+.. +.+...|..+...+.+
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHH
Confidence 888889999999999999999999887643 67889999999999999999999999998763 3367788888999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHhcCCH
Q 003913 415 AEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRT-------IYGIYLESLKNAGNI 487 (787)
Q Consensus 415 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~-------~~~~li~~~~~~g~~ 487 (787)
.|++++|...|++.++.. +-+...++.+...+...|++++|...|+..++..+.+.. .++..+..+...|++
T Consensus 446 ~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 446 EGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred CCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhH
Confidence 999999999999998743 345788999999999999999999999998873222111 222233344457999
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 488 EKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 488 ~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
++|.+++++..... +.+...+..+...+.+.|++++|+++|++..+
T Consensus 525 ~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 525 IEAENLCEKALIID--PECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999988864 44567899999999999999999999999886
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.4e-16 Score=176.01 Aligned_cols=400 Identities=10% Similarity=0.026 Sum_probs=289.7
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCH-HHHHHHHH
Q 003913 184 TKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRP-SLHNSLFR 262 (787)
Q Consensus 184 ~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~ 262 (787)
......|.+.|++++|+..|++..+. .|+...|..+-.+|. +.|++++|++.+.+..+ +.|+. ..+..+-.
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~---~l~~~~~Ai~~~~~al~---l~p~~~~a~~~~a~ 202 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHN---ALGDWEKVVEDTTAALE---LDPDYSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHH---HhCCHHHHHHHHHHHHH---cCCCCHHHHHHHHH
Confidence 34455678899999999999998874 578888999988998 89999999999999987 45654 45666666
Q ss_pred HHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcC---------------
Q 003913 263 ALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAG--------------- 327 (787)
Q Consensus 263 ~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g--------------- 327 (787)
++... |++++|..-|..+...+...+......+. ..+. ..+........+..
T Consensus 203 a~~~l------g~~~eA~~~~~~~~~~~~~~~~~~~~~~~--~~l~-----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 269 (615)
T TIGR00990 203 AYDGL------GKYADALLDLTASCIIDGFRNEQSAQAVE--RLLK-----KFAESKAKEILETKPENLPSVTFVGNYLQ 269 (615)
T ss_pred HHHHc------CCHHHHHHHHHHHHHhCCCccHHHHHHHH--HHHH-----HHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 66665 69999998887665443221111111111 0000 00111111111100
Q ss_pred ----------------CCCCH-HHHHHHHH---HHHhcCChHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHH
Q 003913 328 ----------------FEEGK-EVLLSVLR---VCAKEGDVEDAEKTWLRLLESD-NGI-PTPAFVYKMEAYAKIGEFMK 385 (787)
Q Consensus 328 ----------------~~p~~-~t~~~li~---~~~~~g~~~~A~~~~~~m~~~~-~~~-~~~~~~~li~~~~~~g~~~~ 385 (787)
..|+. ..+..+.. -....+++++|.+.|+...+.+ ..| ....|+.+...+...|++++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~e 349 (615)
T TIGR00990 270 SFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLE 349 (615)
T ss_pred HccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHH
Confidence 00000 00000000 0123468999999999998865 222 45678888999999999999
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003913 386 SLEIFREMQERLGSAS-VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL 464 (787)
Q Consensus 386 A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 464 (787)
|+..|++..+. .|+ ..+|..+...+...|++++|...|+++++.. +.+..+|..+...|...|++++|...|++.+
T Consensus 350 A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal 426 (615)
T TIGR00990 350 ALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSI 426 (615)
T ss_pred HHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999876 344 5688889999999999999999999998853 4457899999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHH
Q 003913 465 EKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAW 544 (787)
Q Consensus 465 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~ 544 (787)
+..+.+...|..+...+.+.|++++|+..|++..+.. +.+...|+.+...+...|++++|++.|++.++ +.|..
T Consensus 427 ~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~----l~p~~ 500 (615)
T TIGR00990 427 DLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE----LEKET 500 (615)
T ss_pred HcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHh----cCCcc
Confidence 8777788999999999999999999999999998863 55688999999999999999999999999886 33321
Q ss_pred HHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhc
Q 003913 545 MEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWL 622 (787)
Q Consensus 545 ~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~ 622 (787)
... ... ....++..+..+...|++++|...++ +.++|++...+..++.+|...|+++
T Consensus 501 ~~~------------------~~~---~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~ 559 (615)
T TIGR00990 501 KPM------------------YMN---VLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVD 559 (615)
T ss_pred ccc------------------ccc---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHH
Confidence 000 000 01122222223344588888988887 7888999888999999999999999
Q ss_pred CCCccccCCCCC
Q 003913 623 HPSFKVSDGNDD 634 (787)
Q Consensus 623 ~A~~~~~~~~~~ 634 (787)
+|...++++...
T Consensus 560 eAi~~~e~A~~l 571 (615)
T TIGR00990 560 EALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHH
Confidence 998888665544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-14 Score=165.96 Aligned_cols=327 Identities=13% Similarity=0.034 Sum_probs=247.9
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g 232 (787)
.+.+.|+++.|+.+++...... +-+......++......|++++|...|+++.+.... +...|..+...+. +.|
T Consensus 51 ~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~---~~g 124 (656)
T PRK15174 51 ACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLL---KSK 124 (656)
T ss_pred HHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH---HcC
Confidence 5668899999999999998875 334444445555666799999999999999886422 4566777777777 789
Q ss_pred CHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCC
Q 003913 233 CLDEACSIYNRMIQLGGYQPRP-SLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNI 311 (787)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g 311 (787)
++++|+..|++..+ +.|+. ..+..+...+... |++++|...++.+......+. ..+..+ ..+...|
T Consensus 125 ~~~~Ai~~l~~Al~---l~P~~~~a~~~la~~l~~~------g~~~eA~~~~~~~~~~~P~~~-~a~~~~---~~l~~~g 191 (656)
T PRK15174 125 QYATVADLAEQAWL---AFSGNSQIFALHLRTLVLM------DKELQAISLARTQAQEVPPRG-DMIATC---LSFLNKS 191 (656)
T ss_pred CHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHC------CChHHHHHHHHHHHHhCCCCH-HHHHHH---HHHHHcC
Confidence 99999999999987 35654 4555566666554 689999999998877665432 233222 2356778
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH----HH
Q 003913 312 DKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMK----SL 387 (787)
Q Consensus 312 ~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----A~ 387 (787)
++++|...++.+.+..-.++...+..+..++.+.|++++|...++++.+..+. +...+..+...|...|++++ |.
T Consensus 192 ~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~ 270 (656)
T PRK15174 192 RLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAA 270 (656)
T ss_pred CHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHH
Confidence 99999999988877543344555566677888999999999999999887654 57778888999999999886 78
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003913 388 EIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKC 467 (787)
Q Consensus 388 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 467 (787)
..|++..... +.+...+..+...+...|++++|...+++..+.. +.+..++..+..+|.+.|++++|...|+.+.+..
T Consensus 271 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 271 EHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 8999888753 2356788888999999999999999999988753 3346677788888999999999999998888643
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 468 RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
+.+...+..+..++...|+.++|.+.|++..+..
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4344445556778888999999999999988763
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.5e-15 Score=168.54 Aligned_cols=329 Identities=8% Similarity=0.040 Sum_probs=259.6
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHH-HHHHHHH
Q 003913 185 KLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSL-HNSLFRA 263 (787)
Q Consensus 185 ~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-~~~ll~~ 263 (787)
-++..+.+.|++++|+.+++........+. ..+..++.+.. ..|++++|+..|+++.+. .|+... +..+-..
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~-~~l~~l~~~~l---~~g~~~~A~~~l~~~l~~---~P~~~~a~~~la~~ 119 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGR-DLLRRWVISPL---ASSQPDAVLQVVNKLLAV---NVCQPEDVLLVASV 119 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCch-hHHHHHhhhHh---hcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHH
Confidence 345566789999999999999988755433 34444445555 699999999999999974 566544 4444444
Q ss_pred HHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003913 264 LVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCA 343 (787)
Q Consensus 264 ~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~ 343 (787)
+... |++++|...+++++..... +...+..+. ..+...|+.++|...++.+....-. +...+..+ ..+.
T Consensus 120 l~~~------g~~~~Ai~~l~~Al~l~P~-~~~a~~~la--~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~ 188 (656)
T PRK15174 120 LLKS------KQYATVADLAEQAWLAFSG-NSQIFALHL--RTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFL 188 (656)
T ss_pred HHHc------CCHHHHHHHHHHHHHhCCC-cHHHHHHHH--HHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHH
Confidence 5554 6999999999999876432 234444444 7789999999999999988765322 22233333 4578
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH---
Q 003913 344 KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETEL--- 420 (787)
Q Consensus 344 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~--- 420 (787)
..|++++|...++.+.+....++...+..+...+.+.|++++|...|++..... +.+...+..+...+...|++++
T Consensus 189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~ 267 (656)
T PRK15174 189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKL 267 (656)
T ss_pred HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHH
Confidence 899999999999999887644455566667788999999999999999999764 3367788889999999999986
Q ss_pred -HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 421 -TESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 421 -A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
|...+++..+.. +.+..++..+...+.+.|++++|...++...+..+.+...+..+...|.+.|++++|+..|+++..
T Consensus 268 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 268 QAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999998753 345789999999999999999999999999986677788899999999999999999999999998
Q ss_pred CCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 003913 500 DQTIGVNT-RSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 500 ~~~~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (787)
.+ |+. ..+..+..++...|+.++|...|++..+.
T Consensus 347 ~~---P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 347 EK---GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred hC---ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 74 554 34445677899999999999999999873
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.7e-15 Score=174.20 Aligned_cols=478 Identities=9% Similarity=0.018 Sum_probs=279.2
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH-hHHHHHHHHH-----h
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSE-MTFHILIVAY-----L 226 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~-~ty~~li~~~-----~ 226 (787)
.+.+.|++++|+...+...+.. +.|...+..+ ..+ ++.++|..+++++.+.. |+. ..+..+.... .
T Consensus 87 ~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~L-a~i---~~~~kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l 158 (987)
T PRK09782 87 AYRHFGHDDRARLLLEDQLKRH--PGDARLERSL-AAI---PVEVKSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNAL 158 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHH-HHh---ccChhHHHHHHHHHHhC--CCChhHHHHHHHHhhccchh
Confidence 5556677777777777776654 3344444443 222 66667777777776653 332 2222222220 1
Q ss_pred cCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhh
Q 003913 227 SAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHS 306 (787)
Q Consensus 227 ~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 306 (787)
.-.+.++|.+.++ .... ...|+..+....+.-+.... |++++|+.++.++.+.+... ..-...+- ..
T Consensus 159 ---~y~q~eqAl~AL~-lr~~-~~~~~~~vL~L~~~rlY~~l-----~dw~~Ai~lL~~L~k~~pl~-~~~~~~L~--~a 225 (987)
T PRK09782 159 ---RLAQLPVARAQLN-DATF-AASPEGKTLRTDLLQRAIYL-----KQWSQADTLYNEARQQNTLS-AAERRQWF--DV 225 (987)
T ss_pred ---hhhhHHHHHHHHH-Hhhh-CCCCCcHHHHHHHHHHHHHH-----hCHHHHHHHHHHHHhcCCCC-HHHHHHHH--HH
Confidence 1346666777666 3321 23333555555555555443 46777777777777776442 22222232 24
Q ss_pred hcc-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHH-------------
Q 003913 307 YQD-NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG-IPTPAFV------------- 371 (787)
Q Consensus 307 ~~~-~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~------------- 371 (787)
|.. .++ +++..+++. .++-+...+..+...|.+.|+.++|.++++++...... |...+|-
T Consensus 226 y~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~ 300 (987)
T PRK09782 226 LLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQA 300 (987)
T ss_pred HHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhh
Confidence 444 233 556555442 23356777778888888888888888888776654211 1111110
Q ss_pred -----------------HHHHHHHHc------------------------------------------------------
Q 003913 372 -----------------YKMEAYAKI------------------------------------------------------ 380 (787)
Q Consensus 372 -----------------~li~~~~~~------------------------------------------------------ 380 (787)
.++..+.+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~ 380 (987)
T PRK09782 301 LANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLD 380 (987)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHH
Confidence 012222222
Q ss_pred ---------CChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCC---hHHHHHH----------------------
Q 003913 381 ---------GEFMKSLEIFREMQER--LGSASVPAYHKIIELLCKAEE---TELTESL---------------------- 424 (787)
Q Consensus 381 ---------g~~~~A~~~~~~m~~~--g~~p~~~t~~~li~~~~~~g~---~~~A~~l---------------------- 424 (787)
|+.++|..+|+..... ...++...-+-++..|.+.+. ..+|..+
T Consensus 381 q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (987)
T PRK09782 381 QLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADN 460 (987)
T ss_pred HHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhh
Confidence 3333333333333221 011222233345555555544 2222222
Q ss_pred HHHHHH-cCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 425 MKEFVE-TGM-KP--LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 425 ~~~m~~-~g~-~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
...... .+. ++ +...|..+..++.. ++.++|...+....... |+......+...+...|++++|...|+++...
T Consensus 461 ~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~ 538 (987)
T PRK09782 461 CPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-PDAWQHRAVAYQAYQVEDYATALAAWQKISLH 538 (987)
T ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 111111 111 23 56778888877776 78888988887776533 45443334455556889999999999987664
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHH-HHhh---cc--cccc-cccccCCchHHHH
Q 003913 501 QTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDY-VLSL---NR--KEVK-KPVSLNLSSEQRE 573 (787)
Q Consensus 501 ~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~-~~~l---~~--~~~~-~~~~~~l~~~~~~ 573 (787)
+|+...+..+..++.+.|+.++|..+++..++.. |+....+.. +..+ ++ +.+. ........| +.
T Consensus 539 ---~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~----P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P--~~ 609 (987)
T PRK09782 539 ---DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG----LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP--SA 609 (987)
T ss_pred ---CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CH
Confidence 4566667777888888999999999999888643 332222111 1111 11 0000 000111222 25
Q ss_pred HHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccccCCCCCcceEEeeeccchHHHHH
Q 003913 574 NLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPYKYSTISHPYFCFYA 651 (787)
Q Consensus 574 ~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~~~~t~~~~~~~~~~ 651 (787)
..|..+...+...|+.++|...++ +.++|+++..+..++.++...|++++|...+.++....|.....+......+..
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR 689 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 677888888888899998888887 888899888888899889999999998888888888888877777788888888
Q ss_pred HhhccCcccccccchh
Q 003913 652 DKFWPKGRLVIPKLIH 667 (787)
Q Consensus 652 ~g~~~~a~~~~~~mi~ 667 (787)
.|.+++|+..+.+.++
T Consensus 690 lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 690 LDDMAATQHYARLVID 705 (987)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 8888888877777665
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-14 Score=169.03 Aligned_cols=470 Identities=9% Similarity=-0.044 Sum_probs=309.1
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHc-cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGK-ERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQ 231 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~ 231 (787)
.+.+.+++++|..++..+.+.+ +.+......|-.+|.. .++ ++|..++.... .-|...+..+...|. +.
T Consensus 191 lY~~l~dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~l----k~d~~l~~ala~~yi---~~ 260 (987)
T PRK09782 191 RAIYLKQWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQGI----FTDPQSRITYATALA---YR 260 (987)
T ss_pred HHHHHhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhc----ccCHHHHHHHHHHHH---HC
Confidence 7778999999999999999987 4455656677777777 366 88888866422 248889999999999 89
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC----CC--------------------CChhhHHHHHHHHHHHH
Q 003913 232 GCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKP----GG--------------------LSKYYLQQAEFIFHNLL 287 (787)
Q Consensus 232 g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~----~~--------------------~~~g~~~~A~~~~~~m~ 287 (787)
|+.++|.++++++....--.|+..++--++.-..... .. ..++.++-|+++.
T Consensus 261 G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 336 (987)
T PRK09782 261 GEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL---- 336 (987)
T ss_pred CCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh----
Confidence 9999999999998754222344444333322211110 00 0012333333221
Q ss_pred HcCCccCHHHHHHHHH----------------------------------HhhhccCCCHHHHHHHHHHHHHc-C-CCCC
Q 003913 288 TSGLEIQKDIYSGLIW----------------------------------LHSYQDNIDKERISLLKKEMQQA-G-FEEG 331 (787)
Q Consensus 288 ~~~~~p~~~~~~~li~----------------------------------~~~~~~~g~~~~a~~l~~~m~~~-g-~~p~ 331 (787)
++.|.... .... .....+.|+.++|.++|+..... + -.++
T Consensus 337 --~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 412 (987)
T PRK09782 337 --ATLPANEM--LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLS 412 (987)
T ss_pred --cCCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccC
Confidence 12222221 1111 12234556667777777766541 1 2233
Q ss_pred HHHHHHHHHHHHhcCChHHHHHH-------------------------HHHHHhC-CC-CC--CHHHHHHHHHHHHHcCC
Q 003913 332 KEVLLSVLRVCAKEGDVEDAEKT-------------------------WLRLLES-DN-GI--PTPAFVYKMEAYAKIGE 382 (787)
Q Consensus 332 ~~t~~~li~~~~~~g~~~~A~~~-------------------------~~~m~~~-~~-~~--~~~~~~~li~~~~~~g~ 382 (787)
.....-++..|.+.+.+....++ .+..... +. .+ +...|..+..++.. |+
T Consensus 413 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~ 491 (987)
T PRK09782 413 QTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TL 491 (987)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CC
Confidence 44445666666665552222111 1111111 11 12 45667777777766 78
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003913 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462 (787)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (787)
.++|...|.+.... .|+......+...+...|++++|...|+++... .|+...+..+..++.+.|+.++|...++.
T Consensus 492 ~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 492 PGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred cHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888877777655 355444434445556788888888888887553 45555566777788888888888888888
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCH
Q 003913 463 CLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIES 542 (787)
Q Consensus 463 m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p 542 (787)
.++..+.+...+..+...+.+.|++++|...|++..+.. |+...|..+...+.+.|++++|+..|++.++ .+|
T Consensus 568 AL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~---P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~----l~P 640 (987)
T PRK09782 568 AEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA---PSANAYVARATIYRQRHNVPAAVSDLRAALE----LEP 640 (987)
T ss_pred HHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCC
Confidence 877444454455554455556688888888888888753 6788888888888888888888888888886 556
Q ss_pred HHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchh
Q 003913 543 AWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHE 620 (787)
Q Consensus 543 ~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~ 620 (787)
+. ...+..+...+...|+.++|+..++ +.+.|+++..+..++.+|...|+
T Consensus 641 d~----------------------------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 641 NN----------------------------SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD 692 (987)
T ss_pred CC----------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 52 5678888889999999999999888 88899999999999999999999
Q ss_pred hcCCCccccCCCCCcceEEeeeccchHHHHHHhhccCcccccccchhhcCChhHHHHHhhcC
Q 003913 621 WLHPSFKVSDGNDDIPYKYSTISHPYFCFYADKFWPKGRLVIPKLIHRWLTPRALAYWFMYG 682 (787)
Q Consensus 621 ~~~A~~~~~~~~~~~p~~~~t~~~~~~~~~~~g~~~~a~~~~~~mi~~gl~P~~lay~~m~~ 682 (787)
+++|...+++.....|.................++..+.+.+.+-.. ++|+.++.....+
T Consensus 693 ~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~--~~~~~~a~~~~g~ 752 (987)
T PRK09782 693 MAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT--FSFDSSIGLRSGA 752 (987)
T ss_pred HHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh--cCccchhccccch
Confidence 99999999988888887544333333344455555556555554443 6787775444443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-14 Score=168.62 Aligned_cols=361 Identities=11% Similarity=0.031 Sum_probs=247.7
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g 232 (787)
.+...|++++|..+++...+.. +.+...+..+...+.+.|++++|+..+++..+... .+.. |..+...+. +.|
T Consensus 58 ~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~---~~g 130 (765)
T PRK10049 58 AYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYK---RAG 130 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHH---HCC
Confidence 6778888888988888888764 55666677888888888899999988888887632 2344 777766777 788
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCH------HHHHHHHHHh
Q 003913 233 CLDEACSIYNRMIQLGGYQPRPSLH-NSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQK------DIYSGLIWLH 305 (787)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~pd~~t~-~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~ 305 (787)
+.++|+..++++.+. .|+.... ..+..++... |..++|...++.+.. .|+. ......+.+.
T Consensus 131 ~~~~Al~~l~~al~~---~P~~~~~~~~la~~l~~~------~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~ 198 (765)
T PRK10049 131 RHWDELRAMTQALPR---APQTQQYPTEYVQALRNN------RLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLS 198 (765)
T ss_pred CHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHC------CChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhh
Confidence 889999998888873 4655433 3333333332 477788888776553 2211 1112222111
Q ss_pred h---hccCCCH---HHHHHHHHHHHHc-CCCCCHH-HH----HHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHH
Q 003913 306 S---YQDNIDK---ERISLLKKEMQQA-GFEEGKE-VL----LSVLRVCAKEGDVEDAEKTWLRLLESDNG-IPTPAFVY 372 (787)
Q Consensus 306 ~---~~~~g~~---~~a~~l~~~m~~~-g~~p~~~-t~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~ 372 (787)
. ....+++ ++|++.++.+.+. .-.|+.. .+ ...+.++...|++++|...|+.+.+.+.. |+ ..-..
T Consensus 199 ~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~ 277 (765)
T PRK10049 199 FMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRW 277 (765)
T ss_pred cccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHH
Confidence 1 1122233 6677788887754 2233321 11 11134456778889999999888887632 32 22223
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----------CCCC--
Q 003913 373 KMEAYAKIGEFMKSLEIFREMQERLGSA---SVPAYHKIIELLCKAEETELTESLMKEFVETG-----------MKPL-- 436 (787)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~p~-- 436 (787)
+...|...|++++|+..|+++....... ....+..+..++...|++++|..+++.+.... -.|+
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~ 357 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD 357 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence 5778888899999999988877542111 13445666777888899999999888888642 1123
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHH
Q 003913 437 -MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILS 515 (787)
Q Consensus 437 -~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~ 515 (787)
...+..+...+...|++++|+.+++++....+.+...+..+...+...|++++|++.+++..... |.+...+..+..
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~ 435 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAW 435 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHH
Confidence 23456677788888999999999988888777788888888888888999999999999888864 445677777777
Q ss_pred HHHcCCCHHHHHHHHHHHHH
Q 003913 516 AYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~ 535 (787)
.+...|++++|+.+++++++
T Consensus 436 ~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 436 TALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 88888899999999998886
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-13 Score=158.63 Aligned_cols=370 Identities=9% Similarity=0.007 Sum_probs=205.4
Q ss_pred cCCcchHHHHHHHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 003913 142 LRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHIL 221 (787)
Q Consensus 142 ~~p~~~t~~~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~l 221 (787)
..|..++=.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++..+... .+...+..+
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 89 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGL 89 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 334443333334456677777777777776532 34555566777777777777777777777665421 134445555
Q ss_pred HHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHH
Q 003913 222 IVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGL 301 (787)
Q Consensus 222 i~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 301 (787)
...+. +.|++++|+..+++..+. .|+...+..+-.++... |+.++|...++++.+..+. +...+..+
T Consensus 90 a~~l~---~~g~~~eA~~~l~~~l~~---~P~~~~~~~la~~l~~~------g~~~~Al~~l~~al~~~P~-~~~~~~~l 156 (765)
T PRK10049 90 ILTLA---DAGQYDEALVKAKQLVSG---APDKANLLALAYVYKRA------GRHWDELRAMTQALPRAPQ-TQQYPTEY 156 (765)
T ss_pred HHHHH---HCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 56666 677777777777777663 34333343333334333 4677777777777766654 33333333
Q ss_pred HHHhhhccCCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH-----hcCCh---HHHHHHHHHHHhC-CCCCC
Q 003913 302 IWLHSYQDNIDKERISLLKKEMQQAGFEEGK------EVLLSVLRVCA-----KEGDV---EDAEKTWLRLLES-DNGIP 366 (787)
Q Consensus 302 i~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~------~t~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-~~~~~ 366 (787)
..+...... .+.|+..++.... .|+. .....++.... ..+++ ++|.+.++.+.+. ...|+
T Consensus 157 a~~l~~~~~--~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~ 231 (765)
T PRK10049 157 VQALRNNRL--SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD 231 (765)
T ss_pred HHHHHHCCC--hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 333444444 3455555554332 1111 11122222222 22333 5666666666643 11121
Q ss_pred HH-HH----HHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CH
Q 003913 367 TP-AF----VYKMEAYAKIGEFMKSLEIFREMQERLGS-ASVPAYHKIIELLCKAEETELTESLMKEFVETGMKP---LM 437 (787)
Q Consensus 367 ~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~ 437 (787)
.. .+ ...+.++...|++++|+..|+++.+.+.. |+.. -..+..+|...|++++|..+|+++.+..-.. ..
T Consensus 232 ~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~ 310 (765)
T PRK10049 232 ATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSD 310 (765)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCCh
Confidence 11 11 11123344557777777777777665422 2221 1124556777777777777777766532110 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------------CC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 003913 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCR------------PN---RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT 502 (787)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~------------p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 502 (787)
.....|..++...|++++|..+++.+.+..+ |+ ...+..+...+...|++++|+++++++....
T Consensus 311 ~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~- 389 (765)
T PRK10049 311 EELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA- 389 (765)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3455566666777777777777777665322 22 2345566667777777777777777776663
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 503 IGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 503 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
|-+...+..+...+...|++++|++.+++.++
T Consensus 390 -P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~ 421 (765)
T PRK10049 390 -PGNQGLRIDYASVLQARGWPRAAENELKKAEV 421 (765)
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 55666777777777777777777777777765
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-13 Score=134.69 Aligned_cols=348 Identities=13% Similarity=0.064 Sum_probs=261.8
Q ss_pred ccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHH
Q 003913 177 RFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSL 256 (787)
Q Consensus 177 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t 256 (787)
+.+..+|..+|.++||--..+.|.+++++-.+...+.+..+||.+|.+-. +-...++..+|.+. .+.||..|
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S-------~~~~K~Lv~EMisq-km~Pnl~T 275 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS-------YSVGKKLVAEMISQ-KMTPNLFT 275 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH-------hhccHHHHHHHHHh-hcCCchHh
Confidence 44567899999999999999999999999998877889999999998866 22337899999987 79999999
Q ss_pred HHHHHHHHHcCCCCCChhhHH----HHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHH-HHHHH----HHHHHcC
Q 003913 257 HNSLFRALVSKPGGLSKYYLQ----QAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKER-ISLLK----KEMQQAG 327 (787)
Q Consensus 257 ~~~ll~~~~~~~~~~~~g~~~----~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~-a~~l~----~~m~~~g 327 (787)
||+++.+.++. |+++ .|.+++.+|.+.|+.|.-.+|..+| ...++.++..+ |..++ +.+....
T Consensus 276 fNalL~c~akf------g~F~~ar~aalqil~EmKeiGVePsLsSyh~ii--k~f~re~dp~k~as~~i~dI~N~ltGK~ 347 (625)
T KOG4422|consen 276 FNALLSCAAKF------GKFEDARKAALQILGEMKEIGVEPSLSSYHLII--KNFKRESDPQKVASSWINDIQNSLTGKT 347 (625)
T ss_pred HHHHHHHHHHh------cchHHHHHHHHHHHHHHHHhCCCcchhhHHHHH--HHhcccCCchhhhHHHHHHHHHhhccCc
Confidence 99999988876 4444 5678889999999999999999999 67788777754 33333 3333344
Q ss_pred CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003913 328 FEE----GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESD----NGIP---TPAFVYKMEAYAKIGEFMKSLEIFREMQER 396 (787)
Q Consensus 328 ~~p----~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 396 (787)
++| |..-|.+.++.|.+..+.+.|.++..-+.... +.|+ ..-|..+....|+...++.-...|+.|.-.
T Consensus 348 fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~ 427 (625)
T KOG4422|consen 348 FKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS 427 (625)
T ss_pred ccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 554 45667889999999999999999987665432 1222 223556788899999999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CH--------H-----HHHHHHHH
Q 003913 397 LGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG-MH--------D-----RLHLAFSE 462 (787)
Q Consensus 397 g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g-~~--------~-----~a~~~~~~ 462 (787)
-+-|+..+...++++....|.++-.-+++..++..|...+....--++..+++.. .. . -|..+++.
T Consensus 428 ~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~ 507 (625)
T KOG4422|consen 428 AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEA 507 (625)
T ss_pred eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999998886655555555555555544 11 0 01111111
Q ss_pred HH------hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003913 463 CL------EKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGV---NTRSCNIILSAYLSSGDFVKAEKIYDLM 533 (787)
Q Consensus 463 m~------~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p---~~~t~~~li~~~~~~g~~~~A~~~~~~m 533 (787)
.. +...-.....+...-.+.+.|+.++|.++|....+++.--| ......-+++.-.+..+...|..+++-|
T Consensus 508 ~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 508 YESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 11 02234456677888889999999999999999866553223 3333445666777888999999999999
Q ss_pred HHcCCcc
Q 003913 534 CLKKYEI 540 (787)
Q Consensus 534 ~~~g~~~ 540 (787)
...++..
T Consensus 588 ~~~n~~~ 594 (625)
T KOG4422|consen 588 SAFNLPI 594 (625)
T ss_pred HHcCchh
Confidence 8755433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-12 Score=149.53 Aligned_cols=428 Identities=11% Similarity=0.022 Sum_probs=301.0
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCH-HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHH---HHHhcC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDF-ALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILI---VAYLSA 228 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li---~~~~~~ 228 (787)
...+.|+++.|+..|..+.+.. +.+. .++ .++..+...|+.++|+.++++... |+...+..++ ..+.
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~----p~n~~~~~llalA~ly~-- 113 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS----SMNISSRGLASAARAYR-- 113 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc----CCCCCHHHHHHHHHHHH--
Confidence 6679999999999999999875 3232 334 888888999999999999999883 4444444443 3455
Q ss_pred CcCCCHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhh
Q 003913 229 PVQGCLDEACSIYNRMIQLGGYQPRP-SLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSY 307 (787)
Q Consensus 229 ~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 307 (787)
..|++++|+++|+++.+. .|+. ..+..+...+... ++.++|.+.++.+..... +...+ +..++.+
T Consensus 114 -~~gdyd~Aiely~kaL~~---dP~n~~~l~gLa~~y~~~------~q~~eAl~~l~~l~~~dp--~~~~~--l~layL~ 179 (822)
T PRK14574 114 -NEKRWDQALALWQSSLKK---DPTNPDLISGMIMTQADA------GRGGVVLKQATELAERDP--TVQNY--MTLSYLN 179 (822)
T ss_pred -HcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHhhc------CCHHHHHHHHHHhcccCc--chHHH--HHHHHHH
Confidence 679999999999999985 4543 3444444445554 589999999999987654 44444 4444666
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHH-----
Q 003913 308 QDNIDKERISLLKKEMQQAGFEE-GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAF--VYKMEAYAK----- 379 (787)
Q Consensus 308 ~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--~~li~~~~~----- 379 (787)
...++..+|++.++++.+. .| +...+..++.++.+.|-...|.++..+-... +.+....+ ...+.-..+
T Consensus 180 ~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~ 256 (822)
T PRK14574 180 RATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLP 256 (822)
T ss_pred HhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccc
Confidence 6677777799999999986 45 5667788889999999999988776543321 11111111 000111111
Q ss_pred ----cCC---hHHHHHHHHHHHHc-CCCCCH-H----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 380 ----IGE---FMKSLEIFREMQER-LGSASV-P----AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM 446 (787)
Q Consensus 380 ----~g~---~~~A~~~~~~m~~~-g~~p~~-~----t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 446 (787)
..+ .+.|+.-++.+... +-.|.. . ..--.+-++...|+..++.+.++.|...|.+.-..+-..+.++
T Consensus 257 ~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ada 336 (822)
T PRK14574 257 TRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASA 336 (822)
T ss_pred cccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence 112 34455556665542 112321 1 2223456778889999999999999988866556788889999
Q ss_pred HHhcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC------------CCCCH-
Q 003913 447 YLNLGMHDRLHLAFSECLEK------CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT------------IGVNT- 507 (787)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~------------~~p~~- 507 (787)
|...+++++|..+|..+... ..++......|.-+|...+++++|..+++++.+.-. -.||-
T Consensus 337 yl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~ 416 (822)
T PRK14574 337 YIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI 416 (822)
T ss_pred HHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH
Confidence 99999999999999998752 233455567888999999999999999999987421 01122
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhcc
Q 003913 508 RSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIES 587 (787)
Q Consensus 508 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~ 587 (787)
..+..++..+...|++.+|++.++++.. ..|. +.-++..+.......|
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~----~aP~----------------------------n~~l~~~~A~v~~~Rg 464 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSS----TAPA----------------------------NQNLRIALASIYLARD 464 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCC----------------------------CHHHHHHHHHHHHhcC
Confidence 2334456678889999999999999986 4444 2566777888888888
Q ss_pred chhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccccCCCCCcceE
Q 003913 588 DEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPYK 638 (787)
Q Consensus 588 ~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~~ 638 (787)
....|+..++ ..++|++......++..+...|+|.+|.....+.....|..
T Consensus 465 ~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 465 LPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred CHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 8888888887 66788888888888888888899988877766666666653
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.8e-13 Score=145.21 Aligned_cols=510 Identities=11% Similarity=0.062 Sum_probs=296.4
Q ss_pred CcchHHHHH-HHh--hcCChhHHHHHHHHHHhcC-CCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHH
Q 003913 144 QEDGTYLAV-HCM--RIRENETGFRVYEWMMQQH-WYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFH 219 (787)
Q Consensus 144 p~~~t~~~~-~~~--~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~ 219 (787)
|+.+-+.+- +|. ..+++..|+.+|....... ...+|+.+. +-.++.+.|+.+.|+..|.+..+.+ | ..-+
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~a~~ralqLd--p--~~v~ 234 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALLAFERALQLD--P--TCVS 234 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHHHHHHHHhcC--h--hhHH
Confidence 444444433 333 4677888888888755432 245565442 2355678888888888888877752 3 2222
Q ss_pred HHHHH--Hh-cCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHH
Q 003913 220 ILIVA--YL-SAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKD 296 (787)
Q Consensus 220 ~li~~--~~-~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 296 (787)
+++.- +. .......+..++.++...-...+-.| +..+.|-+-+... |++..+..+.+.+......-..-
T Consensus 235 alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP--~~l~~LAn~fyfK------~dy~~v~~la~~ai~~t~~~~~~ 306 (1018)
T KOG2002|consen 235 ALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENP--VALNHLANHFYFK------KDYERVWHLAEHAIKNTENKSIK 306 (1018)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCc--HHHHHHHHHHhhc------ccHHHHHHHHHHHHHhhhhhHHH
Confidence 22221 11 00123446667777766655433333 3444555555554 57888888777776655322222
Q ss_pred HHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003913 297 IYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEV--LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKM 374 (787)
Q Consensus 297 ~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 374 (787)
.-+..-++.++-..|++++|...|.+..+ ..||.++ +.-|...|.+.|+++.+...|+.+.+..+. +..+...|.
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k--~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG 383 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLK--ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILG 383 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHc--cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 22334444777788888888888765554 3455444 345677778888888888888887776532 455666666
Q ss_pred HHHHHcC----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----HcCCCCCHHHHHHHHHH
Q 003913 375 EAYAKIG----EFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFV----ETGMKPLMPSYINLTNM 446 (787)
Q Consensus 375 ~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~p~~~t~~~li~~ 446 (787)
..|+..+ ..+.|..++.+..+.- +-|...|-.+...+-. +++..++.+|.... ..+-.+-....|.+...
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvasl 461 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASL 461 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Confidence 6666664 4566666666665542 3356666655555544 34444466555443 34445667777888888
Q ss_pred HHhcCCHHHHHHHHHHHHhc----CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH-HHHHHHHH
Q 003913 447 YLNLGMHDRLHLAFSECLEK----CRPN------RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT-RSCNIILS 515 (787)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~----~~p~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~-~t~~~li~ 515 (787)
+...|++++|...|...... ..++ +.+--.+...+-..++++.|.+.|..+.+.. |.- ..|.-++.
T Consensus 462 hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh---p~YId~ylRl~~ 538 (1018)
T KOG2002|consen 462 HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH---PGYIDAYLRLGC 538 (1018)
T ss_pred HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC---chhHHHHHHhhH
Confidence 88888888888877776643 1222 2233334555566677788888888877764 443 34444443
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcc------cccccccccCCchHHHHHHHHHHhhhhhhc---
Q 003913 516 AYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNR------KEVKKPVSLNLSSEQRENLIGLLLGGLCIE--- 586 (787)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~------~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~--- 586 (787)
.....+...+|...+..... .-.-+|+....++....... +-.......+.. .+|+.+..+|.+.|...
T Consensus 539 ma~~k~~~~ea~~~lk~~l~-~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~-~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALN-IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTST-KTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHh-cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhcc-CCchhHHHHhhHHHHHHhcc
Confidence 33445667777777777774 44456665444442221111 100000000111 12345555555543322
Q ss_pred ---------cchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccccCCCCCcceEEeeeccchHHHHHHhhc
Q 003913 587 ---------SDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPYKYSTISHPYFCFYADKFW 655 (787)
Q Consensus 587 ---------~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~~~~t~~~~~~~~~~~g~~ 655 (787)
+..++|.+++. +..+|.|..+-+-++-+++.+|+|.+|..+|....+-......+|...+..+...|.|
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy 696 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQY 696 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHH
Confidence 23456666666 7778888888888888888888888888877322222222233555556688888888
Q ss_pred cCcccccccchhhcC---ChhHHHH
Q 003913 656 PKGRLVIPKLIHRWL---TPRALAY 677 (787)
Q Consensus 656 ~~a~~~~~~mi~~gl---~P~~lay 677 (787)
..|+++|+.-+.... .+..+.|
T Consensus 697 ~~AIqmYe~~lkkf~~~~~~~vl~~ 721 (1018)
T KOG2002|consen 697 RLAIQMYENCLKKFYKKNRSEVLHY 721 (1018)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHH
Confidence 888888877665555 4555544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.4e-11 Score=138.37 Aligned_cols=365 Identities=9% Similarity=0.041 Sum_probs=247.0
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g 232 (787)
.+...|++++|.++++.+.+.. +.+...+..++..+...++.++|++.++++... .|+...+ +..++... ..+
T Consensus 111 ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~--l~layL~~-~~~ 183 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNY--MTLSYLNR-ATD 183 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHH--HHHHHHHH-hcc
Confidence 4445677777777777777765 445566666777777777777777777777665 3454444 22333311 245
Q ss_pred CHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCcc-----CHHHHHHHHHHhh
Q 003913 233 CLDEACSIYNRMIQLGGYQPR-PSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEI-----QKDIYSGLIWLHS 306 (787)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~~~~~~li~~~~ 306 (787)
+..+|++.++++.+. .|+ ...+..++.++.+. |-...|.++..+-...=-.. ..+.....+....
T Consensus 184 ~~~~AL~~~ekll~~---~P~n~e~~~~~~~~l~~~------~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~ 254 (822)
T PRK14574 184 RNYDALQASSEAVRL---APTSEEVLKNHLEILQRN------RIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAV 254 (822)
T ss_pred hHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHc------CCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcc
Confidence 555577777777764 354 33344445555543 34445554443321000000 0011111111100
Q ss_pred -hc--cCCC---HHHHHHHHHHHHH-cCCCCCH-H----HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003913 307 -YQ--DNID---KERISLLKKEMQQ-AGFEEGK-E----VLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKM 374 (787)
Q Consensus 307 -~~--~~g~---~~~a~~l~~~m~~-~g~~p~~-~----t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 374 (787)
.. ...+ .+.|+.-++.+.. .+-.|.. . ...-.+-++...|++.++.+.++.+...+......+-..+.
T Consensus 255 ~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 255 LPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 00 1111 2445555555544 2222432 1 22355667889999999999999999988665567778899
Q ss_pred HHHHHcCChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----------CC--C
Q 003913 375 EAYAKIGEFMKSLEIFREMQERL-----GSASVPAYHKIIELLCKAEETELTESLMKEFVETGM-----------KP--L 436 (787)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----------~p--~ 436 (787)
++|...+++++|..+|+++.... ..++......|.-+|...+++++|..+++.+.+.-- .| |
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 99999999999999999986542 233444467899999999999999999999987311 12 2
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHH
Q 003913 437 -MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILS 515 (787)
Q Consensus 437 -~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~ 515 (787)
...+..++..+.-.|++.+|++.++++...-|-|......+.+.+...|+..+|++.++...... +-+..+......
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~--P~~~~~~~~~~~ 492 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLA--PRSLILERAQAE 492 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC--CccHHHHHHHHH
Confidence 23455667778899999999999999988888899999999999999999999999998877764 456778888889
Q ss_pred HHHcCCCHHHHHHHHHHHHH
Q 003913 516 AYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~ 535 (787)
++...|++++|..+.+...+
T Consensus 493 ~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 493 TAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHhhhhHHHHHHHHHHHHh
Confidence 99999999999999999886
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-11 Score=122.24 Aligned_cols=367 Identities=15% Similarity=0.136 Sum_probs=220.7
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHH--ccCChh-HHHHHHHHHHHCCC------------------
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMG--KERKFA-KCRDIFDDIINQGR------------------ 211 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~--~~g~~~-~A~~~f~~m~~~g~------------------ 211 (787)
-....|.++.+.-+++.|...| .+.+..+--.|...-+ ...++. .-++.|-.|...|-
T Consensus 124 kmIS~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~ 202 (625)
T KOG4422|consen 124 KMISSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFET 202 (625)
T ss_pred HHHhhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhh
Confidence 4456788888888888888887 5656555544444322 222222 22333444443321
Q ss_pred -CCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcC
Q 003913 212 -VPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG 290 (787)
Q Consensus 212 -~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~ 290 (787)
.....||.+||.|+| +--..+.|.++|++-... ..+.+..+||.+|.+-. +....+++.+|....
T Consensus 203 ~PKT~et~s~mI~Gl~---K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S----------~~~~K~Lv~EMisqk 268 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLC---KFSSLERARELYKEHRAA-KGKVYREAFNGLIGASS----------YSVGKKLVAEMISQK 268 (625)
T ss_pred cCCCchhHHHHHHHHH---HHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHH----------hhccHHHHHHHHHhh
Confidence 114467777777777 667777777777777665 45677777777776643 333466777777777
Q ss_pred CccCHHHHHHHHHHhhhccCCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHH----hC
Q 003913 291 LEIQKDIYSGLIWLHSYQDNIDKER----ISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVED-AEKTWLRLL----ES 361 (787)
Q Consensus 291 ~~p~~~~~~~li~~~~~~~~g~~~~----a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~-A~~~~~~m~----~~ 361 (787)
+.||..|++.++ .+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..+..++. .+
T Consensus 269 m~Pnl~TfNalL--~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK 346 (625)
T KOG4422|consen 269 MTPNLFTFNALL--SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGK 346 (625)
T ss_pred cCCchHhHHHHH--HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccC
Confidence 777777777777 66666665543 45666777777777777777777777777766644 222222222 12
Q ss_pred CCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003913 362 DNGI----PTPAFVYKMEAYAKIGEFMKSLEIFREMQER----LGSASV---PAYHKIIELLCKAEETELTESLMKEFVE 430 (787)
Q Consensus 362 ~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~---~t~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (787)
.++| |...|..-|..|....+.+-|.++-.-+... -+.|+. .-|..+....|+....+.-...|+.|+-
T Consensus 347 ~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP 426 (625)
T KOG4422|consen 347 TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP 426 (625)
T ss_pred cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222 3334455566666667777776665544321 122332 2255566667777777777777777777
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcC-C-------------------H-H
Q 003913 431 TGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYLESLKNAG-N-------------------I-E 488 (787)
Q Consensus 431 ~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~~~~~li~~~~~~g-~-------------------~-~ 488 (787)
+-+-|+..+...++++..-.|.++-.-++|..+.. |..-+...-.-++..+++.. + + +
T Consensus 427 ~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e 506 (625)
T KOG4422|consen 427 SAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKE 506 (625)
T ss_pred ceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 66677777777788887778888777777777766 43333333333333333332 0 1 1
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCc
Q 003913 489 KAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYE 539 (787)
Q Consensus 489 ~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 539 (787)
.....-.+|.+.. . .....+.+.-.+.+.|..++|-++|....+++-.
T Consensus 507 ~~e~~~~R~r~~~-~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ 554 (625)
T KOG4422|consen 507 AYESQPIRQRAQD-W--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNK 554 (625)
T ss_pred HHHhhHHHHHhcc-C--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCc
Confidence 1111222344433 3 3445566666788999999999999988766543
|
|
| >PF03161 LAGLIDADG_2: LAGLIDADG DNA endonuclease family; InterPro: IPR004860 This is a family of site-specific DNA endonucleases encoded by DNA mobile elements | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.8e-14 Score=134.46 Aligned_cols=162 Identities=28% Similarity=0.454 Sum_probs=101.2
Q ss_pred HHHHHHHhhhhhhccchhhcceeEEEEEccCCcccHHHHHHHHHHchhhcCCCccc-----cCCCCC--cceEEeeeccc
Q 003913 573 ENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHEWLHPSFKV-----SDGNDD--IPYKYSTISHP 645 (787)
Q Consensus 573 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~-----~~~~~~--~p~~~~t~~~~ 645 (787)
.++.+.||+.......-..+.-.++.... +. ...+-+.|.....+-...... .....+ ....+.|..++
T Consensus 3 ~ii~G~LLGDg~l~~~~~~~~~~~~~~~~--~~--~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~f~T~~~~ 78 (178)
T PF03161_consen 3 SIIIGLLLGDGSLEKRGKGSRLRFQQSFK--QS--KEYVLHKYEILKGYCSSNPPPIKSRVGKRTGKIYKSYRFRTRSLP 78 (178)
T ss_dssp HHHHHHHHTT-EEE-SSTTS-BEEEEEES------HHHHHHHHHHTGGG--S----EEEEEE-TTS-EEEEEEEE---BG
T ss_pred EEEEEEEccCCEEEeCCCCceEEEEEccc--cH--HHHHHHHHHHhhhhhcCCcccceeeccccCCceeEEEEEEccchH
Confidence 56677777765544433333312223332 21 444556677766554433311 112222 34558999999
Q ss_pred hHHHHHHhhccCccc-ccccchhhcCChhHHHHHhhcCC---cccCCCcEEEEccCCHHHHHHHHHHHhhC-CCceEEEe
Q 003913 646 YFCFYADKFWPKGRL-VIPKLIHRWLTPRALAYWFMYGG---HRTSVGDILLKLKVSSEGIALVFKTLKAR-SLDCRVKK 720 (787)
Q Consensus 646 ~~~~~~~g~~~~a~~-~~~~mi~~gl~P~~lay~~m~~g---~~~~~g~~~~~~~g~~~e~~~l~~~l~~~-gl~~~~~~ 720 (787)
.|..+.+.+|.++.+ ++|+.+++.++|.++|||+|+|| .....|.++|+++++.+|++.|.+.|+.+ ||+|+|++
T Consensus 79 ~f~~l~~~fY~~~~Kk~ip~~I~~~LTp~~LA~W~mdDG~~~~~~~~g~~l~T~sFt~~Ev~~L~~~L~~kf~l~~~i~~ 158 (178)
T PF03161_consen 79 SFNELYELFYPNGKKKIIPENIHDYLTPLALAYWFMDDGYSKSKKGRGIRLCTNSFTKEEVERLQNILKTKFGLKCSIHK 158 (178)
T ss_dssp GGHHHHHHHBSSSSB---TTHHHHH--HHHHHHHHHHHE-STT-S---EEE--TTS-HHHHHHHHHHHHHHH---EEEEE
T ss_pred HHHHHHHeeeeCCCcccChHHHHHhcCHHHhhheeecCCeeecCCCCcEEEEECCCCHHHHHHHHHHHHHHhCeEEEEEE
Confidence 999999999999987 99999999999999999999999 34566777777777999999999999998 99999999
Q ss_pred cC--cEEEEEEeCCchHHHH
Q 003913 721 KG--RVFWIGFLGSNSTLFW 738 (787)
Q Consensus 721 ~~--~~~~i~~~~~~~~~~~ 738 (787)
++ .+|||||+++|+++|+
T Consensus 159 ~~~~~~y~i~i~~~s~~~f~ 178 (178)
T PF03161_consen 159 HGKKNQYRIYIPAKSMDKFR 178 (178)
T ss_dssp ET--TEEEEEE-GGGHHHHH
T ss_pred cCCCceEEEEEeHHHHhhhC
Confidence 99 7999999999999986
|
Similar to the homing endonuclease LAGLIDADG/HNH domain (IPR001982 from INTERPRO), the members of this family are also LAGLIDADG endonucleases. ; GO: 0004519 endonuclease activity; PDB: 3OOR_A 3OOL_A 3C0W_A 1R7M_A 3C0X_A. |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.9e-11 Score=131.71 Aligned_cols=239 Identities=13% Similarity=0.104 Sum_probs=104.4
Q ss_pred CcchHHHHHHHhhcCChhHHHHHHHHHHhcCCCc-cCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH--hHHHH
Q 003913 144 QEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYR-FDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSE--MTFHI 220 (787)
Q Consensus 144 p~~~t~~~~~~~~~~~~~~A~~~~~~m~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~--~ty~~ 220 (787)
|+..+++.-.+--.|+++.++.+...+...-... .-...|--+..+|-..|++++|...|.+-.+.. ||. ..+--
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~G 347 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVG 347 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccc
Confidence 3333333334444555555555555554432000 001123334455555555555555555444432 222 22223
Q ss_pred HHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHH
Q 003913 221 LIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSG 300 (787)
Q Consensus 221 li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 300 (787)
|...+. +.|+++.|...|+..... .||..--..++..+....+ -.+-..+.|..++....+..+ .++-.+
T Consensus 348 lgQm~i---~~~dle~s~~~fEkv~k~---~p~~~etm~iLG~Lya~~~-~~~~~~d~a~~~l~K~~~~~~---~d~~a~ 417 (1018)
T KOG2002|consen 348 LGQMYI---KRGDLEESKFCFEKVLKQ---LPNNYETMKILGCLYAHSA-KKQEKRDKASNVLGKVLEQTP---VDSEAW 417 (1018)
T ss_pred hhHHHH---HhchHHHHHHHHHHHHHh---CcchHHHHHHHHhHHHhhh-hhhHHHHHHHHHHHHHHhccc---ccHHHH
Confidence 344444 455555555555555542 3444333333333222110 000123444444444433331 122222
Q ss_pred HHHHhhhccCCCHHHHHHHHH----HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHH-----
Q 003913 301 LIWLHSYQDNIDKERISLLKK----EMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES---DNGIPTP----- 368 (787)
Q Consensus 301 li~~~~~~~~g~~~~a~~l~~----~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~----- 368 (787)
+.....+- .++...++..|. .|...|-.+.....|.+.......|+++.|...|...... ...+|..
T Consensus 418 l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~l 496 (1018)
T KOG2002|consen 418 LELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNL 496 (1018)
T ss_pred HHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchh
Confidence 22222222 223333344443 2334455566667777777777777777777777666554 1112221
Q ss_pred --HHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003913 369 --AFVYKMEAYAKIGEFMKSLEIFREMQER 396 (787)
Q Consensus 369 --~~~~li~~~~~~g~~~~A~~~~~~m~~~ 396 (787)
-|| +...+-..++.+.|.+.|..+.+.
T Consensus 497 t~~YN-larl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 497 TLKYN-LARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred HHHHH-HHHHHHhhhhhhHHHHHHHHHHHH
Confidence 222 334444445555555555555543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4e-09 Score=111.05 Aligned_cols=470 Identities=12% Similarity=0.046 Sum_probs=316.3
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHH----HHHCCCCCCHhHHHHHHHHHhcC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDD----IINQGRVPSEMTFHILIVAYLSA 228 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~----m~~~g~~pd~~ty~~li~~~~~~ 228 (787)
++++..-++.|..++....+. ++.+..+|.+-...=-..|+++...++.++ +...|+..+...|-.=..+|-
T Consensus 415 AlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e-- 490 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE-- 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh--
Confidence 555666667777777777665 566666666655555666777776666554 334566666666666666665
Q ss_pred CcCCCHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhh
Q 003913 229 PVQGCLDEACSIYNRMIQLGGYQPR--PSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHS 306 (787)
Q Consensus 229 ~~~g~~~~A~~l~~~m~~~~g~~pd--~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 306 (787)
+.|..--+..+.+..+.- |+.-. ..||+.--..|.+. +.++-|..+|...+..-+. +..++.... ..
T Consensus 491 -~agsv~TcQAIi~avigi-gvEeed~~~tw~~da~~~~k~------~~~~carAVya~alqvfp~-k~slWlra~--~~ 559 (913)
T KOG0495|consen 491 -DAGSVITCQAIIRAVIGI-GVEEEDRKSTWLDDAQSCEKR------PAIECARAVYAHALQVFPC-KKSLWLRAA--MF 559 (913)
T ss_pred -hcCChhhHHHHHHHHHhh-ccccchhHhHHhhhHHHHHhc------chHHHHHHHHHHHHhhccc-hhHHHHHHH--HH
Confidence 566666666666666543 33322 23555555556554 4677777777777654432 233333333 55
Q ss_pred hccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 003913 307 YQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKS 386 (787)
Q Consensus 307 ~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 386 (787)
--..|..+....+|++.... ++-....|.....-+-..|++..|..++....+..+. +...|-.-+..-..+..++.|
T Consensus 560 ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~era 637 (913)
T KOG0495|consen 560 EKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERA 637 (913)
T ss_pred HHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHH
Confidence 56677788888899888875 3334556666777777889999999999999988755 788899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003913 387 LEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL-MPSYINLTNMYLNLGMHDRLHLAFSECLE 465 (787)
Q Consensus 387 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 465 (787)
..+|.+.... .|+...|.--+..---.+..++|.+++++.++. -|+ ...|..+.+.+-+.++++.|...|..-.+
T Consensus 638 R~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k 713 (913)
T KOG0495|consen 638 RDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK 713 (913)
T ss_pred HHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence 9999988764 567777766666667778999999999998874 454 56788888999999999999999998888
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHH
Q 003913 466 KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWM 545 (787)
Q Consensus 466 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~ 545 (787)
.|+-.+..|-.|.+.=-+.|.+-.|..+|++..-++ |-|...|...|..-.+.|+.+.|..+..+.++. -|..
T Consensus 714 ~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN--Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe----cp~s- 786 (913)
T KOG0495|consen 714 KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN--PKNALLWLESIRMELRAGNKEQAELLMAKALQE----CPSS- 786 (913)
T ss_pred cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC--CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCcc-
Confidence 888888999999999999999999999999999886 678899999999999999999999998888862 2221
Q ss_pred HHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEEEEEccCCcccHHHHHHHHHHchhhcCCC
Q 003913 546 EKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHEWLHPS 625 (787)
Q Consensus 546 ~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~ 625 (787)
...|..-|......+.--....+ +.-...|+-....++.++-...+++.|.
T Consensus 787 ---------------------------g~LWaEaI~le~~~~rkTks~DA--Lkkce~dphVllaia~lfw~e~k~~kar 837 (913)
T KOG0495|consen 787 ---------------------------GLLWAEAIWLEPRPQRKTKSIDA--LKKCEHDPHVLLAIAKLFWSEKKIEKAR 837 (913)
T ss_pred ---------------------------chhHHHHHHhccCcccchHHHHH--HHhccCCchhHHHHHHHHHHHHHHHHHH
Confidence 12222222221111110000000 1111233334444555555556666666
Q ss_pred ccccCCCCCcceEEeeeccchHHHHHHhhccCcccccccchhhcCChhHHHHHhhc
Q 003913 626 FKVSDGNDDIPYKYSTISHPYFCFYADKFWPKGRLVIPKLIHRWLTPRALAYWFMY 681 (787)
Q Consensus 626 ~~~~~~~~~~p~~~~t~~~~~~~~~~~g~~~~a~~~~~~mi~~gl~P~~lay~~m~ 681 (787)
.-|.++.+..|+.-.+|....-....+|.-+.-+.++.+... .+|..--.|.-+
T Consensus 838 ~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~av 891 (913)
T KOG0495|consen 838 EWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAV 891 (913)
T ss_pred HHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHH
Confidence 666666666666555554444444555544444444444333 345444444433
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.9e-10 Score=119.04 Aligned_cols=285 Identities=9% Similarity=0.024 Sum_probs=211.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-cCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhcc
Q 003913 231 QGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALV-SKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQD 309 (787)
Q Consensus 231 ~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~-~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 309 (787)
.|++++|.+......+. .++...+ .++.+.+ ... |+.+.|...+.++.+.. |+...+..+.....+..
T Consensus 97 eGd~~~A~k~l~~~~~~---~~~p~l~-~llaA~aA~~~-----g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH---AEQPVVN-YLLAAEAAQQR-----GDEARANQHLERAAELA--DNDQLPVEITRVRIQLA 165 (398)
T ss_pred CCCHHHHHHHHHHHHhc---ccchHHH-HHHHHHHHHHC-----CCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHH
Confidence 58888888777765542 1222222 3333322 322 58888888888887643 44444444443567778
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCC
Q 003913 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT-------PAFVYKMEAYAKIGE 382 (787)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~ 382 (787)
.|+++.|...++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++........
T Consensus 166 ~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~ 244 (398)
T PRK10747 166 RNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG 244 (398)
T ss_pred CCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888999999999888753 225667888899999999999999999999988755322 133334444444555
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003913 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462 (787)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (787)
.+...++++.+.+. .+.+......+..++...|+.++|..++++..+. .|+... .++.+....++.+++.+..+.
T Consensus 245 ~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 245 SEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQ 319 (398)
T ss_pred HHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHH
Confidence 56666666666543 3447778888999999999999999999998873 455422 233444456899999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 463 CLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 463 m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
..+..+-|...+.++...+.+.|++++|.+.|+.+.+. .|+..+|..|...+.+.|+.++|.+++++-..
T Consensus 320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~---~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ---RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 98877888899999999999999999999999999986 59999999999999999999999999997653
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.4e-09 Score=114.60 Aligned_cols=365 Identities=14% Similarity=0.050 Sum_probs=270.9
Q ss_pred hcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHH
Q 003913 156 RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLD 235 (787)
Q Consensus 156 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~ 235 (787)
-.|++++|.+++.+++++. +.+...|-+|...|-..|+.+++...+-....... -|..-|-.+-.-.. +.|+++
T Consensus 151 arg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~---~~~~i~ 224 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSE---QLGNIN 224 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHH---hcccHH
Confidence 3499999999999999986 67888999999999999999999877655444322 26677888877777 899999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHH--HHhhhccCCCH
Q 003913 236 EACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLI--WLHSYQDNIDK 313 (787)
Q Consensus 236 ~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li--~~~~~~~~g~~ 313 (787)
+|.-+|.+.++. .|+..-+--==..+++.. |+...|..-|.++.......+-..+-.++ .++.+...++.
T Consensus 225 qA~~cy~rAI~~---~p~n~~~~~ers~L~~~~-----G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 225 QARYCYSRAIQA---NPSNWELIYERSSLYQKT-----GDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HHHHHHHHHHhc---CCcchHHHHHHHHHHHHh-----ChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999984 565544333223344433 69999999999998877644444443333 24556667777
Q ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---------------------------CC
Q 003913 314 ERISLLKKEMQQAG-FEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDN---------------------------GI 365 (787)
Q Consensus 314 ~~a~~l~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~---------------------------~~ 365 (787)
+.|.+.+......+ -.-+..+++.++..+.+...++.|......+..... .+
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 88888887776632 334566788888999999999999888777766222 22
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003913 366 PTPAFVYKMEAYAKIGEFMKSLEIFREMQERL--GSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINL 443 (787)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 443 (787)
+..+ .-++-++......+....+.....+.. +.-+...|.-+..+|...|++.+|..+|..+...-..-+...|-.+
T Consensus 377 ~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 377 DLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred cchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 2222 122333344344444444444445554 3334567888999999999999999999999986656678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-------CCCCCHHHHHHHHHH
Q 003913 444 TNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ-------TIGVNTRSCNIILSA 516 (787)
Q Consensus 444 i~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-------~~~p~~~t~~~li~~ 516 (787)
..+|-..|..+.|.+.|+..+...+-+..+--.|-..|-+.|+.++|.+.++.|..-+ ...|+...--.....
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~ 535 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDI 535 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHH
Confidence 9999999999999999999998777788888899999999999999999999965322 145566666677778
Q ss_pred HHcCCCHHHHHHHHHHHHH
Q 003913 517 YLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~ 535 (787)
+.+.|+.++=+.....|+.
T Consensus 536 l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 536 LFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHhhhHHHHHHHHHHHHH
Confidence 8899998887776666664
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-09 Score=117.04 Aligned_cols=289 Identities=9% Similarity=0.020 Sum_probs=208.5
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhcc
Q 003913 230 VQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQD 309 (787)
Q Consensus 230 ~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 309 (787)
..|+++.|.+.+.+..+ ..|+...+..+..-.+... |+.+.|.+.+.+..+... +......+.....+..
T Consensus 96 ~~g~~~~A~~~l~~~~~---~~~~~~~~~llaA~aa~~~-----g~~~~A~~~l~~a~~~~p--~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNAD---HAAEPVLNLIKAAEAAQQR-----GDEARANQHLEEAAELAG--NDNILVEIARTRILLA 165 (409)
T ss_pred hCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCC--cCchHHHHHHHHHHHH
Confidence 47999999999988765 3566554444433333332 589999999999876543 3322223323466677
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH-HHHHH---HHcCChHH
Q 003913 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVY-KMEAY---AKIGEFMK 385 (787)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-li~~~---~~~g~~~~ 385 (787)
.|+++.|...++.+.+.. +-+..+...+...+...|++++|.+.+..+.+.+.. +...+.. -..++ ...+..++
T Consensus 166 ~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999864 225667889999999999999999999999998754 3333321 12222 33333344
Q ss_pred HHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHH--HhcCCHHHHHHH
Q 003913 386 SLEIFREMQERLG---SASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPS-YINLTNMY--LNLGMHDRLHLA 459 (787)
Q Consensus 386 A~~~~~~m~~~g~---~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~li~~~--~~~g~~~~a~~~ 459 (787)
+.+.+..+..... +.+...+..+...+...|+.++|.+++++..+.. ||... ...++..+ ...++.+.+.+.
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~ 321 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKL 321 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHH
Confidence 4456666554421 1377888899999999999999999999999853 33321 11133333 345778889999
Q ss_pred HHHHHhcCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHH--hhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 460 FSECLEKCRPNR--TIYGIYLESLKNAGNIEKAEEIFNH--MHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 460 ~~~m~~~~~p~~--~~~~~li~~~~~~g~~~~A~~l~~~--m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
++...+..+-|. ....++...+.+.|++++|.+.|+. ..+ ..|+...+..+...+.+.|+.++|.+++++-..
T Consensus 322 ~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~---~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 322 IEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK---EQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 988887666666 7788999999999999999999995 544 358999999999999999999999999998653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8e-12 Score=132.25 Aligned_cols=284 Identities=10% Similarity=-0.021 Sum_probs=216.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChH-HHHH
Q 003913 312 DKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDN--GIPTPAFVYKMEAYAKIGEFM-KSLE 388 (787)
Q Consensus 312 ~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~-~A~~ 388 (787)
...+|..+|...... +.-+..+..-+..+|...+++++|+++|+.+.+..+ .-+...|.+.+--+-+.=.+. -|.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 367888888884443 333456777889999999999999999999988642 126677887765543321111 1222
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003913 389 IFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEKC 467 (787)
Q Consensus 389 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 467 (787)
+.+.+ +-...+|.++.+.|.-.++.+.|++.|++.++ +.| ..++|+.+.+-+.....+|.|...|+..+.-.
T Consensus 413 Li~~~-----~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 413 LIDTD-----PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHhhC-----CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 33222 22578999999999999999999999999997 456 68999999999999999999999999988644
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHH
Q 003913 468 RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEK 547 (787)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~ 547 (787)
+.+--+|-.|...|.+.++++.|+-.|++..+.+ |-|.+....+...+-+.|+.|+|+.++++... ++|..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~----ld~kn--- 556 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH----LDPKN--- 556 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh----cCCCC---
Confidence 5556667778899999999999999999999986 56788888888999999999999999999986 55531
Q ss_pred HHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCC
Q 003913 548 LDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPS 625 (787)
Q Consensus 548 l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~ 625 (787)
|-..... ...+...++.++|...++ .++-|++...+.+++.+|.+.|+.+.|+
T Consensus 557 -----------------------~l~~~~~--~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 557 -----------------------PLCKYHR--ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred -----------------------chhHHHH--HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHH
Confidence 0011111 112223456677777776 6778999999999999999999999998
Q ss_pred ccccCCCCCcce
Q 003913 626 FKVSDGNDDIPY 637 (787)
Q Consensus 626 ~~~~~~~~~~p~ 637 (787)
..+--+...+|.
T Consensus 612 ~~f~~A~~ldpk 623 (638)
T KOG1126|consen 612 LHFSWALDLDPK 623 (638)
T ss_pred HhhHHHhcCCCc
Confidence 888766666665
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.4e-11 Score=118.79 Aligned_cols=448 Identities=13% Similarity=0.084 Sum_probs=231.9
Q ss_pred hHHHHH-----HHhhcCChhHHHHHHHHHHhcCCCccCHHH-HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH-----
Q 003913 147 GTYLAV-----HCMRIRENETGFRVYEWMMQQHWYRFDFAL-ATKLADYMGKERKFAKCRDIFDDIINQGRVPSE----- 215 (787)
Q Consensus 147 ~t~~~~-----~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~----- 215 (787)
.||.++ .+.......+|+..++.+++.. .-|+.-. --.+-..+.|.+.+.+|++.++-...+ .|++
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknk-mf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~r 275 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNK-MFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMR 275 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhccc-ccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhH
Confidence 466655 3334456778899999888876 4444432 223455678889999999988766654 2322
Q ss_pred -hHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCcc
Q 003913 216 -MTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSL-HNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEI 293 (787)
Q Consensus 216 -~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p 293 (787)
...|.+-..+. +.|+++.|+..|++..+. .|+..+ +|.+|.++|- |+-++..+.|..|+.....|
T Consensus 276 ikil~nigvtfi---q~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i-------~d~ekmkeaf~kli~ip~~~ 342 (840)
T KOG2003|consen 276 IKILNNIGVTFI---QAGQYDDAINSFDHCMEE---APNFIAALNLIICAFAI-------GDAEKMKEAFQKLIDIPGEI 342 (840)
T ss_pred HHHHhhcCeeEE---ecccchhhHhhHHHHHHh---CccHHhhhhhhhhheec-------CcHHHHHHHHHHHhcCCCCC
Confidence 33455555566 899999999999998874 588664 6666766664 58888999999988765544
Q ss_pred CHH------------HHHHHHHHhhh-----ccCCCHHHHHHHHHHHHHcCCCCCHHH----HH----------------
Q 003913 294 QKD------------IYSGLIWLHSY-----QDNIDKERISLLKKEMQQAGFEEGKEV----LL---------------- 336 (787)
Q Consensus 294 ~~~------------~~~~li~~~~~-----~~~g~~~~a~~l~~~m~~~g~~p~~~t----~~---------------- 336 (787)
|.+ ..+-.+.-..+ .+..+.+++.-.-..+..--+.||-.. +.
T Consensus 343 dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dle 422 (840)
T KOG2003|consen 343 DDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLE 422 (840)
T ss_pred CcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhh
Confidence 433 22222211100 011111222111112221112222110 00
Q ss_pred -HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003913 337 -SVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK--IGEFMKSLEIFREMQERLGSASVPAYHKIIELLC 413 (787)
Q Consensus 337 -~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 413 (787)
.-..-+.+.|+++.|.++++-+.+..-+.-...-|.|-..+.- ..++..|..+-+...... +-|....+.-...-.
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAF 501 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceee
Confidence 0112355888888888888877766533323333333222222 234555555544443220 112222222223334
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003913 414 KAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEI 493 (787)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 493 (787)
.+|++++|.+.+++.+...- .-......+.-.+-..|++++|+..|-++..-...+..+.-.+...|--..+...|+++
T Consensus 502 ~ngd~dka~~~ykeal~nda-sc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDA-SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCch-HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 45666666666666655331 11222333334455666666666666665443344555555566666666666666666
Q ss_pred HHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHH---hhcccc---cccccccCC
Q 003913 494 FNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVL---SLNRKE---VKKPVSLNL 567 (787)
Q Consensus 494 ~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~---~l~~~~---~~~~~~~~l 567 (787)
+-+.... ++.|......|...|-+.|+-..|.+++-+--+ -++-+-.+++-+...+ +..++. +++...++
T Consensus 581 ~~q~~sl--ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq- 656 (840)
T KOG2003|consen 581 LMQANSL--IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ- 656 (840)
T ss_pred HHHhccc--CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-
Confidence 6555544 555666666666666666666666665443331 1212222222111110 011111 11100111
Q ss_pred chHHHHHHHHHHhhhhh-hccchhhcceeEE--EEEccCCcccHHHHHHHHHHch
Q 003913 568 SSEQRENLIGLLLGGLC-IESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYH 619 (787)
Q Consensus 568 ~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g 619 (787)
|+.+-|..++..|. +.|++++|...++ -..-|.+....-.|..++...|
T Consensus 657 ---p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 657 ---PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred ---ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 23566776666553 4567777766665 2333555555555555555444
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.7e-12 Score=130.53 Aligned_cols=254 Identities=11% Similarity=0.072 Sum_probs=115.0
Q ss_pred hhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003913 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEK 353 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 353 (787)
|++++|.+++.........|+...|-. ..+......++.+.|...++++...+.. +...+..++.. ...+++++|.+
T Consensus 22 ~~~~~Al~~L~~~~~~~~~~~~~~~~~-~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~ 98 (280)
T PF13429_consen 22 GDYEKALEVLKKAAQKIAPPDDPEYWR-LLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALK 98 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-cccccccccccccccccccccccccccc-ccccccccccc-ccccccccccc
Confidence 699999999966554442333333322 2235566778899999999999876533 45566677766 78999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003913 354 TWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERL-GSASVPAYHKIIELLCKAEETELTESLMKEFVETG 432 (787)
Q Consensus 354 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 432 (787)
++....+.. ++...+..++..+.+.++++++.++++++.... .+.+...|..+...+.+.|+.++|.+.+++.++..
T Consensus 99 ~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~ 176 (280)
T PF13429_consen 99 LAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD 176 (280)
T ss_dssp ---------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-
T ss_pred ccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 988776654 356677788899999999999999999987532 34577788889999999999999999999999853
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHH
Q 003913 433 MKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNI 512 (787)
Q Consensus 433 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ 512 (787)
+-|......++..+...|+.+++.+++....+..+.|...|..+..+|...|+.++|+.+|++..+.. +.|......
T Consensus 177 -P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~--p~d~~~~~~ 253 (280)
T PF13429_consen 177 -PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN--PDDPLWLLA 253 (280)
T ss_dssp -TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS--TT-HHHHHH
T ss_pred -CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc--ccccccccc
Confidence 33578888999999999999999999988887557777889999999999999999999999998874 558888889
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHH
Q 003913 513 ILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+..++...|+.++|..+.++..+
T Consensus 254 ~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 254 YADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHT-----------------
T ss_pred ccccccccccccccccccccccc
Confidence 99999999999999999887653
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.36 E-value=4e-12 Score=131.05 Aligned_cols=256 Identities=14% Similarity=0.147 Sum_probs=114.9
Q ss_pred HhhhccCCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 003913 304 LHSYQDNIDKERISLLKKEMQQAGFEEGKEV-LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE 382 (787)
Q Consensus 304 ~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 382 (787)
+..+.+.|++++|++++++-....-.|+... |..+...+-..++.+.|.+.++++.+.+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 4667788999999999976554432454444 445555667799999999999999988754 56667777777 79999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003913 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETG-MKPLMPSYINLTNMYLNLGMHDRLHLAFS 461 (787)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 461 (787)
+++|.+++++..++. ++...+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+.++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999998876653 466778889999999999999999999987632 45678889999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccC
Q 003913 462 ECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIE 541 (787)
Q Consensus 462 ~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 541 (787)
+.++..+.|....+.++..+...|+.+++.++++...+.. +.|...|..+..+|...|+.++|+.+|++..+ ..
T Consensus 171 ~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~----~~ 244 (280)
T PF13429_consen 171 KALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALK----LN 244 (280)
T ss_dssp HHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH----HS
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccc----cc
Confidence 9998777789999999999999999999999999988763 56778899999999999999999999999986 34
Q ss_pred HHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE
Q 003913 542 SAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR 597 (787)
Q Consensus 542 p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 597 (787)
|+ |..+...+..++...|+.++|..+.+
T Consensus 245 p~----------------------------d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 245 PD----------------------------DPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp TT-----------------------------HHHHHHHHHHHT-------------
T ss_pred cc----------------------------cccccccccccccccccccccccccc
Confidence 43 24556667777777787777776654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-09 Score=116.42 Aligned_cols=283 Identities=12% Similarity=0.125 Sum_probs=192.0
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHh-cCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHcCCC
Q 003913 193 ERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYL-SAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLF--RALVSKPG 269 (787)
Q Consensus 193 ~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~-~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll--~~~~~~~~ 269 (787)
.|+++.|++.+..-.+..- +...+ .++.+.. . +.|++++|.+.|.++.+ ..|+...+..+. ..+...
T Consensus 97 eGd~~~A~k~l~~~~~~~~--~p~l~-~llaA~aA~--~~g~~~~A~~~l~~A~~---~~~~~~~~~~l~~a~l~l~~-- 166 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE--QPVVN-YLLAAEAAQ--QRGDEARANQHLERAAE---LADNDQLPVEITRVRIQLAR-- 166 (398)
T ss_pred CCCHHHHHHHHHHHHhccc--chHHH-HHHHHHHHH--HCCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHC--
Confidence 5888888877777665421 12222 2222222 2 67888888888888875 356654333222 122222
Q ss_pred CCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH
Q 003913 270 GLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGK-------EVLLSVLRVC 342 (787)
Q Consensus 270 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~-------~t~~~li~~~ 342 (787)
|++++|...++.+.+.++. +......+. ..+.+.|++++|.+++..+.+.+..++. .+|..++...
T Consensus 167 ----g~~~~Al~~l~~~~~~~P~-~~~al~ll~--~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 167 ----NENHAARHGVDKLLEVAPR-HPEVLRLAE--QAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred ----CCHHHHHHHHHHHHhcCCC-CHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888776643 334444444 6677778888888888888877654322 2334444444
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003913 343 AKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTE 422 (787)
Q Consensus 343 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 422 (787)
....+.+...++++.+.+.- ..+......+...+...|+.++|.+++++..+. .||... .++.+.+..++.+++.
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al 314 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLE 314 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHH
Confidence 45556666777777665432 236777788889999999999999999888874 444422 2344555668888898
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 423 SLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 423 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
+..+...+.. +-|...+..+...|.+.+++++|.+.|+...+ ..|+..+|..|...+.+.|+.++|.+++++-..
T Consensus 315 ~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~-~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 315 KVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK-QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8888888753 44567788888999999999999999998876 468888888899999999999999998887654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.3e-09 Score=112.75 Aligned_cols=329 Identities=16% Similarity=0.147 Sum_probs=248.1
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 003913 188 DYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSK 267 (787)
Q Consensus 188 ~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~ 267 (787)
..+.-.|++++|.+++.+.++.... +...|-+|-..|- +.|+.++++..+-..-. +.|...-+-..+.-+...
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyE---qrGd~eK~l~~~llAAH---L~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYE---QRGDIEKALNFWLLAAH---LNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHH---HcccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHh
Confidence 3344459999999999999987543 6788999999998 89999999987766654 455544443444444444
Q ss_pred CCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHH
Q 003913 268 PGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVL----LSVLRVCA 343 (787)
Q Consensus 268 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~----~~li~~~~ 343 (787)
. |++.+|.-.|.+.++..+.-....|... ..|.+.|+..+|..-|.++...--..|..-+ -.++..+.
T Consensus 220 ~-----~~i~qA~~cy~rAI~~~p~n~~~~~ers---~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 220 L-----GNINQARYCYSRAIQANPSNWELIYERS---SLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred c-----ccHHHHHHHHHHHHhcCCcchHHHHHHH---HHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 3 6999999999999998876555555443 5678899999999999999885322222223 34456666
Q ss_pred hcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC------------------------
Q 003913 344 KEGDVEDAEKTWLRLLES-DNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLG------------------------ 398 (787)
Q Consensus 344 ~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------------------------ 398 (787)
..++-+.|.+.++..... +-..+...++.++..|.+...++.|......+.....
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~ 371 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVG 371 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCC
Confidence 778779999988877763 2234567788999999999999999999988876222
Q ss_pred ---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHH
Q 003913 399 ---SASVPAYHKIIELLCKAEETELTESLMKEFVETGMKP--LMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRT 472 (787)
Q Consensus 399 ---~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~ 472 (787)
.++... --+.-++......+....+.....+..+.| +...|.-+..+|...|++.+|..+|..+.. -..-+..
T Consensus 372 ~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~ 450 (895)
T KOG2076|consen 372 KELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAF 450 (895)
T ss_pred CCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchh
Confidence 222222 123334455555666666666677666444 567899999999999999999999999987 3445688
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
.|--+..+|...|.+++|.+.|++..... |-+...--+|-..+-+.|+.++|.+.++.|.
T Consensus 451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 451 VWYKLARCYMELGEYEEAIEFYEKVLILA--PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999999999999874 4456667778888999999999999999886
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.2e-08 Score=100.60 Aligned_cols=354 Identities=11% Similarity=0.077 Sum_probs=233.8
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHH--HHHHHHhcCCc
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFH--ILIVAYLSAPV 230 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~--~li~~~~~~~~ 230 (787)
...+.|....|...|...+.. .+..-..|..|.... -+.+.+..+-...+. |..-.. -+..++- .
T Consensus 173 v~k~~~~~s~A~~sfv~~v~~--~P~~W~AWleL~~li---t~~e~~~~l~~~l~~-----~~h~M~~~F~~~a~~---e 239 (559)
T KOG1155|consen 173 VLKELGLLSLAIDSFVEVVNR--YPWFWSAWLELSELI---TDIEILSILVVGLPS-----DMHWMKKFFLKKAYQ---E 239 (559)
T ss_pred HHHhhchHHHHHHHHHHHHhc--CCcchHHHHHHHHhh---chHHHHHHHHhcCcc-----cchHHHHHHHHHHHH---H
Confidence 455667777777777777665 244444444443332 233333222211111 111111 1222333 3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCc--cCHHHHHHHHHHhhhc
Q 003913 231 QGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLE--IQKDIYSGLIWLHSYQ 308 (787)
Q Consensus 231 ~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~ 308 (787)
..+.+++++-....... |+ |+..-+.+.+.++.-.. .++++|+.+|+++.+.++- -|.++|+-.+ +...
T Consensus 240 l~q~~e~~~k~e~l~~~-gf-~~~~~i~~~~A~~~y~~-----rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~ 310 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSV-GF-PNSMYIKTQIAAASYNQ-----RDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHhc-cC-CccHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHh
Confidence 45677777766666654 44 44433444444443332 4899999999999887532 2567777665 3322
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 003913 309 DNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLE 388 (787)
Q Consensus 309 ~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 388 (787)
... .+..+.+-.-.=-+--..|+..+.+-|+-.++-++|...|++.++.++. ...+|+.|..-|....+...|.+
T Consensus 311 ~~s----kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 311 DKS----KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hhH----HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHH
Confidence 211 1122211111111223457778888888889999999999999988765 56788888999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003913 389 IFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCR 468 (787)
Q Consensus 389 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 468 (787)
-++...+-+ +.|-..|-.|.++|.-.+...-|+-.|++..+.. +-|...+.+|..+|.+.++.++|++.|........
T Consensus 386 sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 386 SYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 999988764 3478889999999999999999999999888743 34688999999999999999999999999887545
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh----CCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 469 PNRTIYGIYLESLKNAGNIEKAEEIFNHMHS----DQTIGVN-TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 469 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~~~~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.+...+..|.+.|-+.++.++|...|++-++ .|.+.|. .....-|..-+.+.+++++|..+......
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 5778899999999999999999988887655 3323332 22333355667788899998887777664
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.7e-09 Score=103.73 Aligned_cols=255 Identities=13% Similarity=0.091 Sum_probs=177.0
Q ss_pred hhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003913 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEK 353 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 353 (787)
|+++.|.+++.-+.+.+-..-...-+.|..++......++..|...-+...... +-+......--+.....|++++|.+
T Consensus 433 ~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHH
Confidence 466666666665555444333333333333333444444445444433332210 0111111111122235789999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003913 354 TWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGM 433 (787)
Q Consensus 354 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 433 (787)
.+++.+...-.-....|| +.-.+-+.|++++|++.|-++..- +.-+......+.+.|-...+..+|.+++-+.... +
T Consensus 512 ~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-i 588 (840)
T KOG2003|consen 512 FYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-I 588 (840)
T ss_pred HHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-C
Confidence 999988764322222333 344577889999999999887543 1226667777888899999999999998766542 4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHH
Q 003913 434 KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNII 513 (787)
Q Consensus 434 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~l 513 (787)
+.|+.+..-|...|-+.|+-..|.+.+-.--+-++-|..+..-|..-|....-+++|+..|++..- ++|+..-|-.|
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal---iqp~~~kwqlm 665 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL---IQPNQSKWQLM 665 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh---cCccHHHHHHH
Confidence 556889999999999999999999988877777788999999999999999999999999998865 68999999999
Q ss_pred HHHH-HcCCCHHHHHHHHHHHHH
Q 003913 514 LSAY-LSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 514 i~~~-~~~g~~~~A~~~~~~m~~ 535 (787)
|..| .+.|++.+|..+|+...+
T Consensus 666 iasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH
Confidence 8755 578999999999999885
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.4e-08 Score=105.39 Aligned_cols=453 Identities=12% Similarity=0.051 Sum_probs=289.4
Q ss_pred cCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHH
Q 003913 157 IRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDE 236 (787)
Q Consensus 157 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~ 236 (787)
.-..+.|+-++.+.++. ++.+...|. +|++..-++.|.++++..++. +.-+...|.+.-.-=- ++|+.+.
T Consensus 389 lE~~~darilL~rAvec--cp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE---~ngn~~m 458 (913)
T KOG0495|consen 389 LEEPEDARILLERAVEC--CPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEE---ANGNVDM 458 (913)
T ss_pred ccChHHHHHHHHHHHHh--ccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHH---hcCCHHH
Confidence 34445566666666664 333443333 345556677777777777654 4445666655444444 5677777
Q ss_pred HHHHHHHHHH---hCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCH
Q 003913 237 ACSIYNRMIQ---LGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDK 313 (787)
Q Consensus 237 A~~l~~~m~~---~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~ 313 (787)
..++..+-.. ..|+..+..-|-.=-.+|-.. |.+-.+..+....+..|+.-...--+++-....|.+.+..
T Consensus 459 v~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a------gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~ 532 (913)
T KOG0495|consen 459 VEKIIDRGLSELQANGVEINRDQWLKEAEACEDA------GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAI 532 (913)
T ss_pred HHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc------CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchH
Confidence 7777665432 135666655555544455443 4566666666666766766555555666666777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003913 314 ERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREM 393 (787)
Q Consensus 314 ~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 393 (787)
+-|..+|....+. +.-+...|......=-..|..+.-..++++....-++ ....|-....-+-..|++..|..++...
T Consensus 533 ~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~a 610 (913)
T KOG0495|consen 533 ECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQA 610 (913)
T ss_pred HHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 7777777766653 2234555666665556677777777777777766443 3455655566677778888888888877
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 003913 394 QERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTI 473 (787)
Q Consensus 394 ~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~ 473 (787)
.+.... +...|-+-+..-..+.+++.|..+|.+... ..|+...|.--++.---.++.++|.+++++.++.++.-...
T Consensus 611 f~~~pn-seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl 687 (913)
T KOG0495|consen 611 FEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKL 687 (913)
T ss_pred HHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHH
Confidence 766433 566777777777888888888888877765 45667777766666667778888888888877766666667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHh
Q 003913 474 YGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLS 553 (787)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~ 553 (787)
|-.+...+-+.++++.|.+.|..=.+. +|-..-.|..|...=-+.|.+-+|..++++... -+|.
T Consensus 688 ~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildrarl----kNPk---------- 751 (913)
T KOG0495|consen 688 WLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL----KNPK---------- 751 (913)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh----cCCC----------
Confidence 777788888888888888887776665 555566777777777777788888888887765 3444
Q ss_pred hcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccccCC
Q 003913 554 LNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDG 631 (787)
Q Consensus 554 l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~ 631 (787)
+...|...+..-.+.|+.+.|..+.. ++-.|.+...+.--+.+...-++-..+...+ +.
T Consensus 752 ------------------~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DAL-kk 812 (913)
T KOG0495|consen 752 ------------------NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDAL-KK 812 (913)
T ss_pred ------------------cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHH-Hh
Confidence 26778888888888888888877655 5555655544443333333222211111111 11
Q ss_pred CCCcceEEeeeccchHHHHHHhhccCcccccccchhh
Q 003913 632 NDDIPYKYSTISHPYFCFYADKFWPKGRLVIPKLIHR 668 (787)
Q Consensus 632 ~~~~p~~~~t~~~~~~~~~~~g~~~~a~~~~~~mi~~ 668 (787)
.+.+ ...+....-.|..+..++++.+-|.+.+..
T Consensus 813 ce~d---phVllaia~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 813 CEHD---PHVLLAIAKLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred ccCC---chhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 1222 223334445677777788888888887764
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.5e-08 Score=101.38 Aligned_cols=327 Identities=12% Similarity=0.069 Sum_probs=237.3
Q ss_pred ccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHH
Q 003913 177 RFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSL 256 (787)
Q Consensus 177 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t 256 (787)
..|.+.+-..--.+-+.|....|+..|-..... -+..|.+-+.-.- -....+.+. .... |...|...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~---lit~~e~~~----~l~~--~l~~~~h~ 227 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSE---LITDIEILS----ILVV--GLPSDMHW 227 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHH---hhchHHHHH----HHHh--cCcccchH
Confidence 445554444445566788899999999888764 2334444333222 112222222 2221 22222211
Q ss_pred HH--HHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCC----
Q 003913 257 HN--SLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEE---- 330 (787)
Q Consensus 257 ~~--~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p---- 330 (787)
+. .+..++-.. .+.+++.+-.+.....|+.-+...-+... .+.....|++.|+.+|+++.+. .|
T Consensus 228 M~~~F~~~a~~el------~q~~e~~~k~e~l~~~gf~~~~~i~~~~A--~~~y~~rDfD~a~s~Feei~kn--DPYRl~ 297 (559)
T KOG1155|consen 228 MKKFFLKKAYQEL------HQHEEALQKKERLSSVGFPNSMYIKTQIA--AASYNQRDFDQAESVFEEIRKN--DPYRLD 297 (559)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHhccCCccHHHHHHHH--HHHhhhhhHHHHHHHHHHHHhc--CCCcch
Confidence 11 122233222 36777888888888888765444444443 5666778999999999999987 44
Q ss_pred CHHHHHHHHHHHHhcCChH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003913 331 GKEVLLSVLRVCAKEGDVE-DAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKII 409 (787)
Q Consensus 331 ~~~t~~~li~~~~~~g~~~-~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 409 (787)
|..+|+.++-+--...++. .|..++ .+- .. -+.|..++.+-|+-.++.++|...|++..+-+.+ ....|+-|.
T Consensus 298 dmdlySN~LYv~~~~skLs~LA~~v~-~id--Ky--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmG 371 (559)
T KOG1155|consen 298 DMDLYSNVLYVKNDKSKLSYLAQNVS-NID--KY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMG 371 (559)
T ss_pred hHHHHhHHHHHHhhhHHHHHHHHHHH-Hhc--cC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhh
Confidence 6788988876544333332 233332 222 22 2467778888999999999999999999886433 567899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 003913 410 ELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEK 489 (787)
Q Consensus 410 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~ 489 (787)
+-|....+...|.+-++..++-. +-|-..|-.|.++|.-.+++.-|+-.|++..+-.+-|...|.+|.+.|.+.++.++
T Consensus 372 HEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~e 450 (559)
T KOG1155|consen 372 HEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEE 450 (559)
T ss_pred HHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHH
Confidence 99999999999999999999853 55889999999999999999999999999988667789999999999999999999
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 490 AEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 490 A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
|++.|.....-|. .+...+..|...|-+.++.++|...|++-++
T Consensus 451 AiKCykrai~~~d--te~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 451 AIKCYKRAILLGD--TEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHhccc--cchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999872 3668999999999999999999999988775
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-09 Score=117.73 Aligned_cols=538 Identities=12% Similarity=0.023 Sum_probs=300.3
Q ss_pred hHHHHHHhhccccCCcchHHHHH--HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 003913 130 TLVRILNAQKKWLRQEDGTYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDII 207 (787)
Q Consensus 130 ~~~~~l~~~~~~~~p~~~t~~~~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 207 (787)
.|+..++ ..|+.|+.+||..+ .++..|+.+.|- +|..|.-+. .+.+..+++.++......++.+.|.
T Consensus 11 nfla~~e--~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk------- 79 (1088)
T KOG4318|consen 11 NFLALHE--ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK------- 79 (1088)
T ss_pred hHHHHHH--HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC-------
Confidence 3444443 45799999999887 788999999998 999998887 7888999999999999999988887
Q ss_pred HCCCCCCHhHHHHHHHHHhcCCcCCCHHH---HHHHHHHHHHh---CCCCCCHHHHHHHHHHHHcCCCC--------CCh
Q 003913 208 NQGRVPSEMTFHILIVAYLSAPVQGCLDE---ACSIYNRMIQL---GGYQPRPSLHNSLFRALVSKPGG--------LSK 273 (787)
Q Consensus 208 ~~g~~pd~~ty~~li~~~~~~~~~g~~~~---A~~l~~~m~~~---~g~~pd~~t~~~ll~~~~~~~~~--------~~~ 273 (787)
.|...||+.|+.+|. +.|++.. +.+.+...... .|+---..-+-..+.++-..... ..+
T Consensus 80 ----ep~aDtyt~Ll~ayr---~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~e 152 (1088)
T KOG4318|consen 80 ----EPLADTYTNLLKAYR---IHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLE 152 (1088)
T ss_pred ----CCchhHHHHHHHHHH---hccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHH
Confidence 578899999999999 7888655 33322222221 12111111121111211110000 001
Q ss_pred hhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChHHHH
Q 003913 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGF-EEGKEVLLSVLRVCAKEGDVEDAE 352 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~A~ 352 (787)
|.++.+.+++..+....-. ......+ .-+... ..-..++.. |.+.+. .|+..+|..++.+-...|+++.|.
T Consensus 153 glwaqllkll~~~Pvsa~~---~p~~vfL--rqnv~~--ntpvekLl~-~cksl~e~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 153 GLWAQLLKLLAKVPVSAWN---APFQVFL--RQNVVD--NTPVEKLLN-MCKSLVEAPTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHhhCCccccc---chHHHHH--HHhccC--CchHHHHHH-HHHHhhcCCChHHHHHHHHHHHhcCchhhHH
Confidence 4555555555443211110 1111111 111111 222233333 333333 499999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003913 353 KTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETG 432 (787)
Q Consensus 353 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 432 (787)
.++.+|.+.|+..+..-|-.|+-+ .+...-+..+++-|.+.|+.|+..|+..-+-.+.++|....+. .|
T Consensus 225 ~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~--------e~ 293 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE--------EG 293 (1088)
T ss_pred HHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc--------cc
Confidence 999999999998887777777666 8889999999999999999999999998888888866633332 22
Q ss_pred CCCCHH-----HHHHHHHHHHhcCCHHH--HHHHHHHHHh----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 433 MKPLMP-----SYINLTNMYLNLGMHDR--LHLAFSECLE----KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 433 ~~p~~~-----t~~~li~~~~~~g~~~~--a~~~~~~m~~----~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
.+... .+..+.++......++. +.-+.....+ +......+|...+.. ..+|+-++.+++-..|..--
T Consensus 294 -sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt 371 (1088)
T KOG4318|consen 294 -SQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPT 371 (1088)
T ss_pred -cchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCc
Confidence 22222 23333333111122211 1111111111 333333455444433 33788888888877775421
Q ss_pred -CCC-CCHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHc--CCccCHHHHHHH---------HHHHhhc-cccccccccc
Q 003913 502 -TIG-VNTRSCNIILSAYLSSGDFVKAEKIYD--LMCLK--KYEIESAWMEKL---------DYVLSLN-RKEVKKPVSL 565 (787)
Q Consensus 502 -~~~-p~~~t~~~li~~~~~~g~~~~A~~~~~--~m~~~--g~~~~p~~~~~l---------~~~~~l~-~~~~~~~~~~ 565 (787)
.+. -++..|..++.-|.+.-+......++. ..++. +....|...+-+ .+...+. .+........
T Consensus 372 ~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~ 451 (1088)
T KOG4318|consen 372 LRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPW 451 (1088)
T ss_pred cccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccc
Confidence 012 245567666666665433222222222 11111 111122221111 1111110 0111111111
Q ss_pred CCchHHHHHHHHHHhhhhhhccchhhcceeEE-EEEccCCcccHHHHHHHHHHchhhcCCCccccCCCCCcce---EEee
Q 003913 566 NLSSEQRENLIGLLLGGLCIESDEKRKRHMIR-FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPY---KYST 641 (787)
Q Consensus 566 ~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~---~~~t 641 (787)
+...++--.+-+.++..|+..-+..+++...+ .+-. --+..|..|.+.+..-.+.++|.....+-...+.. .---
T Consensus 452 ~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~-lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~ 530 (1088)
T KOG4318|consen 452 PLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL-LFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPL 530 (1088)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHh
Confidence 22223334555666666666665555543322 0000 01245677777777777777776665332222110 0111
Q ss_pred eccchHHHHHHhhccCcccccccchhhcCC-h-hHHHHHhhcCCcccCCCcEEEEccCCHHHHHHHHHHHhhCCCce
Q 003913 642 ISHPYFCFYADKFWPKGRLVIPKLIHRWLT-P-RALAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKTLKARSLDC 716 (787)
Q Consensus 642 ~~~~~~~~~~~g~~~~a~~~~~~mi~~gl~-P-~~lay~~m~~g~~~~~g~~~~~~~g~~~e~~~l~~~l~~~gl~~ 716 (787)
+.....-+.+.+....+.+++.+|.+.-.. | ..++.|-|.++ ....|..+...++.+.+..-|+.-
T Consensus 531 m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns---------~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 531 MTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNS---------GAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhh---------hhhccCHHHHHHHHHHHHHhhhhh
Confidence 222333455556666667777776654333 3 26788999999 667789999999999998877765
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.5e-10 Score=118.03 Aligned_cols=283 Identities=16% Similarity=0.099 Sum_probs=218.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCC--ccCHHHHHHHHHHhhhc
Q 003913 232 GCLDEACSIYNRMIQLGGYQPRPS-LHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGL--EIQKDIYSGLIWLHSYQ 308 (787)
Q Consensus 232 g~~~~A~~l~~~m~~~~g~~pd~~-t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~ 308 (787)
-+..+|+.+|.+.... .+|.- ...-+-.+|... +++++|+.+|+.+.+... .-+..+|+..++ -..
T Consensus 333 y~~~~A~~~~~klp~h---~~nt~wvl~q~GrayFEl------~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW--HLq 401 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH---HYNTGWVLSQLGRAYFEL------IEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW--HLQ 401 (638)
T ss_pred HHHHHHHHHHHhhHHh---cCCchHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhccccccchhHHHHHHH--HHH
Confidence 3568999999996653 45544 333344455554 699999999999977652 235678887762 211
Q ss_pred cCCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 003913 309 DNIDKERISLLK-KEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSL 387 (787)
Q Consensus 309 ~~g~~~~a~~l~-~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 387 (787)
+ +-++..+ +++.. --+-...+|.++.++|.-.++.+.|.+.|++..+.+.. ...+|+.+..-+.....+|.|.
T Consensus 402 ~----~v~Ls~Laq~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~ 475 (638)
T KOG1126|consen 402 D----EVALSYLAQDLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAM 475 (638)
T ss_pred h----hHHHHHHHHHHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHH
Confidence 1 1222222 22222 12335789999999999999999999999999987643 6788888888889999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003913 388 EIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKC 467 (787)
Q Consensus 388 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 467 (787)
..|+..+....+ +-.+|--|...|.+.++++.|+-.|++.++-. +-+.+....+...+.+.|+.++|+++|++...-.
T Consensus 476 ~~fr~Al~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 476 KSFRKALGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD 553 (638)
T ss_pred HHHHhhhcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence 999988765111 23345556788999999999999999998743 3367788888999999999999999999998866
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 468 RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+.|+..---.+..+...+++++|+..|+++++. ++-+...|..+...|.+.|+.+.|+.-|--|..
T Consensus 554 ~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 554 PKNPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 777777777788888899999999999999996 555678888889999999999999999998885
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-08 Score=98.04 Aligned_cols=309 Identities=12% Similarity=0.073 Sum_probs=222.3
Q ss_pred hHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcC-CccC
Q 003913 216 MTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG-LEIQ 294 (787)
Q Consensus 216 ~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~-~~p~ 294 (787)
..|-.=++.+. ..+.++|..+|-+|.+ ..|..+--+.-+..+.+.. |.++.|.++++.+.++. +.-+
T Consensus 37 r~Yv~GlNfLL----s~Q~dKAvdlF~e~l~---~d~~t~e~~ltLGnLfRsR-----GEvDRAIRiHQ~L~~spdlT~~ 104 (389)
T COG2956 37 RDYVKGLNFLL----SNQPDKAVDLFLEMLQ---EDPETFEAHLTLGNLFRSR-----GEVDRAIRIHQTLLESPDLTFE 104 (389)
T ss_pred HHHHhHHHHHh----hcCcchHHHHHHHHHh---cCchhhHHHHHHHHHHHhc-----chHHHHHHHHHHHhcCCCCchH
Confidence 34555555555 5778888888888887 3566665555555555544 58888888888876643 2223
Q ss_pred HHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHH
Q 003913 295 KDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT----PAF 370 (787)
Q Consensus 295 ~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~ 370 (787)
.-.....-++.-|...|-+++|+.+|..+.+.|.- -....--|+..|-+..+|++|..+-+++.+.+..+.. ..|
T Consensus 105 qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfy 183 (389)
T COG2956 105 QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFY 183 (389)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHH
Confidence 33334444456678888899999999988875421 2345677899999999999999999999888755432 235
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003913 371 VYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL 450 (787)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 450 (787)
.-|...+....+.+.|..++.+..+.+.+ .+..--.+.+.....|+++.|.+.++...+.+..--..+...|..+|.+.
T Consensus 184 CELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l 262 (389)
T COG2956 184 CELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL 262 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 55666666778999999999998876332 33333456678899999999999999999876555567888999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc---CCCHHHHH
Q 003913 451 GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS---SGDFVKAE 527 (787)
Q Consensus 451 g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~---~g~~~~A~ 527 (787)
|+.++....+..+.+. .++...-..|-+.-....-.+.|...+.+-..+ +|+...+..+|..-.. .|...+.+
T Consensus 263 g~~~~~~~fL~~~~~~-~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL 338 (389)
T COG2956 263 GKPAEGLNFLRRAMET-NTGADAELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESL 338 (389)
T ss_pred CCHHHHHHHHHHHHHc-cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhccccccchhhhH
Confidence 9999999999998862 334444455555555555677777777776665 4999999999986653 45577778
Q ss_pred HHHHHHHHcCCccCH
Q 003913 528 KIYDLMCLKKYEIES 542 (787)
Q Consensus 528 ~~~~~m~~~g~~~~p 542 (787)
..++.|....+...|
T Consensus 339 ~~lr~mvge~l~~~~ 353 (389)
T COG2956 339 DLLRDMVGEQLRRKP 353 (389)
T ss_pred HHHHHHHHHHHhhcC
Confidence 888888765444444
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-11 Score=89.80 Aligned_cols=49 Identities=27% Similarity=0.481 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003913 365 IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLC 413 (787)
Q Consensus 365 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 413 (787)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||++||++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444444
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-09 Score=109.21 Aligned_cols=392 Identities=12% Similarity=0.067 Sum_probs=255.2
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003913 182 LATKLADYMGKERKFAKCRDIFDDIINQGRVPS-EMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSL 260 (787)
Q Consensus 182 ~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd-~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~l 260 (787)
.+-..-+-|.+.|++++|++.+.+.++ +.|| .+.|...-.+|. ..|+|+++.+.--+..+ +.|+-+
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~---~lgd~~~Vied~TkALE---l~P~Y~----- 183 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYE---SLGDWEKVIEDCTKALE---LNPDYV----- 183 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHH---HHhhHHHHHHHHHHHhh---cCcHHH-----
Confidence 344555667788999999999998876 8888 777888777787 68999998888877776 567643
Q ss_pred HHHHHcCCCC-CChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHH--------HHH-cC--C
Q 003913 261 FRALVSKPGG-LSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKE--------MQQ-AG--F 328 (787)
Q Consensus 261 l~~~~~~~~~-~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~--------m~~-~g--~ 328 (787)
.++.++... ..-|++.+|+.= .|...+. .++....-.--+.++++. -.+ .+ +
T Consensus 184 -KAl~RRA~A~E~lg~~~eal~D-------------~tv~ci~--~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~ 247 (606)
T KOG0547|consen 184 -KALLRRASAHEQLGKFDEALFD-------------VTVLCIL--EGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPV 247 (606)
T ss_pred -HHHHHHHHHHHhhccHHHHHHh-------------hhHHHHh--hhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCC
Confidence 122221100 000344444321 1111111 222222222222233321 111 11 3
Q ss_pred CCCHHHHHHHHHHHHh--------cC-----ChHHHHHHHHH------------HHhC------CCCCC---------HH
Q 003913 329 EEGKEVLLSVLRVCAK--------EG-----DVEDAEKTWLR------------LLES------DNGIP---------TP 368 (787)
Q Consensus 329 ~p~~~t~~~li~~~~~--------~g-----~~~~A~~~~~~------------m~~~------~~~~~---------~~ 368 (787)
-|+.....+....+-. .+ .+.++.+.+.. +.+. ....+ ..
T Consensus 248 lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~ 327 (606)
T KOG0547|consen 248 LPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAE 327 (606)
T ss_pred CCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHH
Confidence 3444333333333220 00 01112221111 1111 00111 11
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003913 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL 448 (787)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 448 (787)
+...-...+.-+|+.-.|..-|+..++....++ ..|--+...|....+.++....|.+..+.. +-|..+|..-.+++.
T Consensus 328 al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~f 405 (606)
T KOG0547|consen 328 ALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRF 405 (606)
T ss_pred HHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHH
Confidence 111122334457899999999999987644332 237777888999999999999999998854 446788988899999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 003913 449 NLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEK 528 (787)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~ 528 (787)
-.+++++|..-|++.++-.+-++..|--+.-+.-|.+++++++..|++.+++ +|.-+..|+.....+...++++.|.+
T Consensus 406 lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k 483 (606)
T KOG0547|consen 406 LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVK 483 (606)
T ss_pred HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHH
Confidence 9999999999999998866778888988888889999999999999999998 77778999999999999999999999
Q ss_pred HHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcc
Q 003913 529 IYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRM 606 (787)
Q Consensus 529 ~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~ 606 (787)
.|+..++ +.|.. ++. .+... ..+-.+++-.-+. +++..|..++. ++++|....
T Consensus 484 ~YD~ai~----LE~~~--~~~--------------~v~~~----plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~ 538 (606)
T KOG0547|consen 484 QYDKAIE----LEPRE--HLI--------------IVNAA----PLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQ 538 (606)
T ss_pred HHHHHHh----hcccc--ccc--------------cccch----hhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHH
Confidence 9999886 44431 000 00000 1222233322233 78888888887 899999999
Q ss_pred cHHHHHHHHHHchhhcCCCccccCC
Q 003913 607 HSVLRRYLYDQYHEWLHPSFKVSDG 631 (787)
Q Consensus 607 ~~~~l~~~y~~~g~~~~A~~~~~~~ 631 (787)
+|..|+.+-.+.|++++|++.|++.
T Consensus 539 A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 539 AYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999999999888543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-11 Score=89.10 Aligned_cols=50 Identities=32% Similarity=0.402 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003913 400 ASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLN 449 (787)
Q Consensus 400 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 449 (787)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.5e-08 Score=107.25 Aligned_cols=218 Identities=14% Similarity=0.069 Sum_probs=118.0
Q ss_pred hHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HhcCChHHH
Q 003913 275 YLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVC---AKEGDVEDA 351 (787)
Q Consensus 275 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~---~~~g~~~~A 351 (787)
+++.|...++.+.+..+. +..+...+. ..+...|++++|.+++..+.+.++.+.......-..++ ...+..+.+
T Consensus 168 ~~~~Al~~l~~l~~~~P~-~~~~l~ll~--~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 168 ELHAARHGVDKLLEMAPR-HKEVLKLAE--EAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHH--HHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 555555555555544422 222222222 44555555555555555555554332221111111111 112222222
Q ss_pred HHHHHHHHhCCCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCChHHHHHHH
Q 003913 352 EKTWLRLLESDNG---IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPA---YHKIIELLCKAEETELTESLM 425 (787)
Q Consensus 352 ~~~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~li~~~~~~g~~~~A~~l~ 425 (787)
.+.+..+.+..+. .+...+..+...+...|+.++|.+++++..++. ||... .....-.....++.+.+.+.+
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 2333333333221 256677777777778888888888887777652 33321 111222223346667777777
Q ss_pred HHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 003913 426 KEFVETGMKPLM--PSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMH 498 (787)
Q Consensus 426 ~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 498 (787)
+...+.. +-|. ....++...|.+.|++++|.+.|+.... ...|+...+..+...+.+.|+.++|.+++++..
T Consensus 323 e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 323 EKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7766532 2233 5566777788888888888888884333 346777777788888888888888888887753
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.4e-09 Score=103.91 Aligned_cols=200 Identities=16% Similarity=0.120 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL 411 (787)
Q Consensus 332 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 411 (787)
...+..+...+...|++++|.+.+++..+.... +...+..+...|...|++++|.+.|++..+... .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 456777788888899999999999988876533 567778888899999999999999998887643 356677788888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 003913 412 LCKAEETELTESLMKEFVETGMK-PLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKA 490 (787)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A 490 (787)
+...|++++|...+++..+.... .....+..+..++...|++++|...+.+..+..+.+...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998874322 23556777888899999999999999998876566778889999999999999999
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 491 EEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 491 ~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
...+++..... +.+...+..+...+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTY--NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999988763 55677788888889999999999999888764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-08 Score=106.80 Aligned_cols=447 Identities=11% Similarity=0.023 Sum_probs=291.4
Q ss_pred cCCcchHHHHHHHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHH----HHHHC--------
Q 003913 142 LRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFD----DIINQ-------- 209 (787)
Q Consensus 142 ~~p~~~t~~~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~----~m~~~-------- 209 (787)
..|++.-+.+..+.-.|.+++|..+...-.- ...|..........+.+..++++|..++. .+...
T Consensus 47 ~dp~d~~~~aq~l~~~~~y~ra~~lit~~~l---e~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~ 123 (611)
T KOG1173|consen 47 NDPADIYWLAQVLYLGRQYERAAHLITTYKL---EKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAA 123 (611)
T ss_pred CChHHHHHHHHHHHhhhHHHHHHHHHHHhhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhh
Confidence 5666666666655556677777666554322 23366777777788888899999998887 22210
Q ss_pred -CCCCCHhH---HHHH-HHHHhcC----CcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHH
Q 003913 210 -GRVPSEMT---FHIL-IVAYLSA----PVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAE 280 (787)
Q Consensus 210 -g~~pd~~t---y~~l-i~~~~~~----~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~ 280 (787)
-+.+|..- -..+ .+-|... ....+.++|...|.+.. ..|...|-.+...... .+-.+.
T Consensus 124 ~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al-----~~D~~c~Ea~~~lvs~--------~mlt~~ 190 (611)
T KOG1173|consen 124 NTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEAL-----LADAKCFEAFEKLVSA--------HMLTAQ 190 (611)
T ss_pred ceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHH-----hcchhhHHHHHHHHHH--------Hhcchh
Confidence 01111111 0111 1111100 02234455555555443 3444444444333222 333343
Q ss_pred HHHHHHHHcCCc----cCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003913 281 FIFHNLLTSGLE----IQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWL 356 (787)
Q Consensus 281 ~~~~~m~~~~~~----p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 356 (787)
+.|+.+...+.. -+....-.+..+.. ++..+. .....-.+-.-.|..-+......-..-|-..+++.+..++.+
T Consensus 191 Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~-~k~~n~-~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~ 268 (611)
T KOG1173|consen 191 EEFELLESLDLAMLTKEDVERLEILYELKL-CKNRNE-ESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITE 268 (611)
T ss_pred HHHHHHhcccHHhhhhhHHHHHHHHHHhhh-hhhccc-cccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhH
Confidence 333333322211 00111111110000 000000 000000001112334455566666677778999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003913 357 RLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL 436 (787)
Q Consensus 357 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 436 (787)
.+.+..+ +....+..-|.++...|+-.+-..+=.+|.+. .+-..++|-++.--|...|+..+|.+.|.+... +.|.
T Consensus 269 ~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~--lD~~ 344 (611)
T KOG1173|consen 269 ELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATT--LDPT 344 (611)
T ss_pred HHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhh--cCcc
Confidence 9998764 45666666788999999999988888888876 444678999999999999999999999998775 3333
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHH
Q 003913 437 -MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILS 515 (787)
Q Consensus 437 -~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~ 515 (787)
...|..+.+.|+-.|..|.|...+....+-.+-...-+--+.--|.+.++++-|.++|.+.... .|.|+...+-+.-
T Consensus 345 fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai--~P~Dplv~~Elgv 422 (611)
T KOG1173|consen 345 FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI--APSDPLVLHELGV 422 (611)
T ss_pred ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc--CCCcchhhhhhhh
Confidence 5689999999999999999999998887733333333344556688899999999999999987 4678888888888
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhccee
Q 003913 516 AYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHM 595 (787)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 595 (787)
.....+.+.+|..+|+..++ +-++. .. ..... +.+++.|..+|++.+..++|+..
T Consensus 423 vay~~~~y~~A~~~f~~~l~----~ik~~----------~~--------e~~~w---~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 423 VAYTYEEYPEALKYFQKALE----VIKSV----------LN--------EKIFW---EPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred eeehHhhhHHHHHHHHHHHH----Hhhhc----------cc--------cccch---hHHHHhHHHHHHHHhhHHHHHHH
Confidence 88889999999999998874 22211 00 00011 56789999999999999999998
Q ss_pred EE--EEEccCCcccHHHHHHHHHHchhhcCCCccccCCCCCcce
Q 003913 596 IR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPY 637 (787)
Q Consensus 596 ~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~ 637 (787)
++ +.+.|.++.+|..++-+|...|+++.|+..+.+++.+.|+
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 88 8889999999999999999999999999999888888887
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.3e-08 Score=97.74 Aligned_cols=251 Identities=16% Similarity=0.129 Sum_probs=187.9
Q ss_pred hhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003913 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEK 353 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 353 (787)
|++.+|++...+-.+.+-. .+.+.++-+.+....|+.+.+-..+.+..+.--.++..++-+........|+...|..
T Consensus 98 G~~~qAEkl~~rnae~~e~---p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQ---PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred CcHHHHHHHHHHhhhcCcc---hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 7999999999998877754 4667777778999999999999999999886556677788888888999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHH----------------
Q 003913 354 TWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASV-------PAYHKIIE---------------- 410 (787)
Q Consensus 354 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~li~---------------- 410 (787)
-.+++.+.++. +..+......+|.+.|++.+...++..|.+.|.--|. .+|+.++.
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 99999998876 5677888999999999999999999999887764443 23444443
Q ss_pred ------------------HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 003913 411 ------------------LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRT 472 (787)
Q Consensus 411 ------------------~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~ 472 (787)
-+.+.|+.++|.++..+..+.+..|+ -...-.+.+.++.+.-++..++-.+..+-++.
T Consensus 254 ~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 254 NQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred hccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 34445555555555555555444443 11112233444444444444444443455667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.+.+|...|.+.+.+.+|.+.|+...+. .|+..+|+-+.++|.+.|+..+|.+++++.+.
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~---~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKL---RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 8888888888999999999999987775 48889999999999999999999888887763
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-07 Score=96.37 Aligned_cols=232 Identities=9% Similarity=0.021 Sum_probs=178.7
Q ss_pred HHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003913 297 IYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEA 376 (787)
Q Consensus 297 ~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 376 (787)
..+.++.+..+.-.|+.-.|..-|+...+..-.++. .|--+..+|....+-++..+.|.+..+.++. +..+|..-..+
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm 403 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQM 403 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHH
Confidence 334445555566677888888888888775333322 2777778899999999999999999988865 67788888888
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003913 377 YAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRL 456 (787)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 456 (787)
+.-.+++++|..=|++.+..... ++..|--+--+..+.+.++++...|++.++. ++-.+..|+.....+...++++.|
T Consensus 404 ~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A 481 (606)
T KOG0547|consen 404 RFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKA 481 (606)
T ss_pred HHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHH
Confidence 88889999999999998875322 5566766777777889999999999999875 455678999999999999999999
Q ss_pred HHHHHHHHhcC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 003913 457 HLAFSECLEKC--------RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEK 528 (787)
Q Consensus 457 ~~~~~~m~~~~--------~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~ 528 (787)
.+.|+..++.- .+.+.+.-.++..- -.+++..|++++++..+.+ +-....|.+|...-.+.|+.++|++
T Consensus 482 ~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~lQ~~~i~eAie 558 (606)
T KOG0547|consen 482 VKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELD--PKCEQAYETLAQFELQRGKIDEAIE 558 (606)
T ss_pred HHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999988621 12222223333222 2489999999999999875 4467899999999999999999999
Q ss_pred HHHHHHH
Q 003913 529 IYDLMCL 535 (787)
Q Consensus 529 ~~~~m~~ 535 (787)
+|++...
T Consensus 559 lFEksa~ 565 (606)
T KOG0547|consen 559 LFEKSAQ 565 (606)
T ss_pred HHHHHHH
Confidence 9998774
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=6e-08 Score=97.13 Aligned_cols=399 Identities=11% Similarity=0.047 Sum_probs=266.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003913 183 ATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFR 262 (787)
Q Consensus 183 ~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~ 262 (787)
--..+..|-..++-+.|.....+.+..-. ..--|.|+.-+-. ..++..++.--+.+...+ ...- -..|.
T Consensus 100 ~r~~aecy~~~~n~~~Ai~~l~~~p~t~r---~p~inlMla~l~~--~g~r~~~~vl~ykevvre--cp~a----L~~i~ 168 (564)
T KOG1174|consen 100 RRRAAECYRQIGNTDMAIETLLQVPPTLR---SPRINLMLARLQH--HGSRHKEAVLAYKEVIRE--CPMA----LQVIE 168 (564)
T ss_pred HHHHHHHHHHHccchHHHHHHhcCCcccc---chhHHHHHHHHHh--ccccccHHHHhhhHHHHh--cchH----HHHHH
Confidence 34556666677777788777776655422 2223333333332 233333444444444432 1111 11222
Q ss_pred HHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHH
Q 003913 263 ALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAG-FEEGKEVLLSVLRV 341 (787)
Q Consensus 263 ~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~t~~~li~~ 341 (787)
++.+. -+..+..-=..|-...+.|..++...-+.+.+.+-.++...+..++--+.... ++-|+.....+...
T Consensus 169 ~ll~l-------~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~ 241 (564)
T KOG1174|consen 169 ALLEL-------GVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKC 241 (564)
T ss_pred HHHHH-------hhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhh
Confidence 22221 12223333334445556667777777777777777787777777766555544 44467778899999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 003913 342 CAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELT 421 (787)
Q Consensus 342 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 421 (787)
+...|+.++|...|++....++. ++.....-.-.+.+.|+++.-..+...+.... .-+...|-.-...+....+++.|
T Consensus 242 ~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rA 319 (564)
T KOG1174|consen 242 LYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERA 319 (564)
T ss_pred hhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHH
Confidence 99999999999999988876431 11111122334567788888888888876541 12444565556666777889999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 422 ESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 422 ~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
+.+-++.++.. +-+...|..-...+...+++++|.-.|+....--+-+..+|..|+..|...|++.+|.-+-+...+.
T Consensus 320 L~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~- 397 (564)
T KOG1174|consen 320 LNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL- 397 (564)
T ss_pred HHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-
Confidence 99999888754 3345677777778889999999999999987755678899999999999999999999888877665
Q ss_pred CCCCCHHHHHHHH-HHHHc-CCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHH
Q 003913 502 TIGVNTRSCNIIL-SAYLS-SGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLL 579 (787)
Q Consensus 502 ~~~p~~~t~~~li-~~~~~-~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~l 579 (787)
++.+..+.+.+. ..+.- ..--++|.+++++-+ .+.|+. ......+
T Consensus 398 -~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L----~~~P~Y----------------------------~~AV~~~ 444 (564)
T KOG1174|consen 398 -FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL----KINPIY----------------------------TPAVNLI 444 (564)
T ss_pred -hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh----ccCCcc----------------------------HHHHHHH
Confidence 455666666553 22322 222467777777544 477764 4555667
Q ss_pred hhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccccCCCCCcce
Q 003913 580 LGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPY 637 (787)
Q Consensus 580 l~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~ 637 (787)
...|...|..+.+..+.+ +...| |...++.|++++.....+.+|...+..++..+|.
T Consensus 445 AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 445 AELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 777888888888888877 44444 5668899999999999999999998888888887
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-09 Score=105.54 Aligned_cols=234 Identities=8% Similarity=-0.043 Sum_probs=201.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003913 371 VYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL 450 (787)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 450 (787)
+-|..+|.+.|.+.+|.+.|+.-.+. .|-+.||--|-++|.+..+++.|+.++.+-++. .+-|+.....+.+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56899999999999999999988776 566778888999999999999999999998874 233444456678889999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 003913 451 GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIY 530 (787)
Q Consensus 451 g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~ 530 (787)
++.++|.++|+...+..+.|+....++..+|.-.++.+-|+..+.++.+.| + -+...|+.+.-+|.-.+++|-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-A-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-C-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 999999999999999778899999999999999999999999999999999 3 57889999999999999999999999
Q ss_pred HHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccH
Q 003913 531 DLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHS 608 (787)
Q Consensus 531 ~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~ 608 (787)
++.+..--.+. +-.-+|-.|.......|++..|.+.++ +..+|++..++
T Consensus 382 ~RAlstat~~~-----------------------------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~eal 432 (478)
T KOG1129|consen 382 QRALSTATQPG-----------------------------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEAL 432 (478)
T ss_pred HHHHhhccCcc-----------------------------hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHH
Confidence 99885322122 226789999999999999999999998 67789999999
Q ss_pred HHHHHHHHHchhhcCCCccccCCCCCcceE
Q 003913 609 VLRRYLYDQYHEWLHPSFKVSDGNDDIPYK 638 (787)
Q Consensus 609 ~~l~~~y~~~g~~~~A~~~~~~~~~~~p~~ 638 (787)
+.|+-+-.+.|++++|...+..+..+.|+-
T Consensus 433 nNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 433 NNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred HhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 999999999999999999998888888863
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.6e-08 Score=109.30 Aligned_cols=253 Identities=9% Similarity=-0.052 Sum_probs=170.5
Q ss_pred hhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhh-------hccCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhc
Q 003913 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHS-------YQDNIDKERISLLKKEMQQAGFEE-GKEVLLSVLRVCAKE 345 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-------~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~li~~~~~~ 345 (787)
+.+++|...|++.++.... +...+..+...+. ....++.++|...+++..+. .| +...+..+..++...
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--DHNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHc
Confidence 5788999999998876643 2333333332111 12345578888888888774 45 456677777778888
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003913 346 GDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLM 425 (787)
Q Consensus 346 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~ 425 (787)
|++++|...+++..+.++. +...+..+...|...|++++|...+++..+.... +...+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence 8999999999888887743 5667778888888889999999999888876322 2223334455566778888898888
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 003913 426 KEFVETGMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIG 504 (787)
Q Consensus 426 ~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 504 (787)
+++.+.. .| +...+..+..+|...|+.++|...+..+....+.+....+.+...|++.| ++|...++.+.+...-.
T Consensus 430 ~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 430 DELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 8877653 34 35557777788888899999988888876554445566677777777777 47777777766543222
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 003913 505 VNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKK 537 (787)
Q Consensus 505 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (787)
|...-+..+ .|.-.|+-+.+..+ +++.+.+
T Consensus 507 ~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPL--VLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHH--HHHHHhhhHHHHHH-HHhhccc
Confidence 333333333 34556666666665 7777644
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.2e-06 Score=84.41 Aligned_cols=202 Identities=14% Similarity=0.190 Sum_probs=131.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHH--------HHHHcCChHHHHHHHHHHHHcCCCCC
Q 003913 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT-PAFVYKME--------AYAKIGEFMKSLEIFREMQERLGSAS 401 (787)
Q Consensus 331 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~--------~~~~~g~~~~A~~~~~~m~~~g~~p~ 401 (787)
|-.+|-..++.--..|+.+...++|++.+..-+.... ..|.--|- .=....+.+.+.++|+..++. ++-.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHk 399 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHK 399 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcc
Confidence 5556666666666677777777777777764322111 11111111 112346677777777777663 3334
Q ss_pred HHHHHHHHHHH----HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 003913 402 VPAYHKIIELL----CKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIY 477 (787)
Q Consensus 402 ~~t~~~li~~~----~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~l 477 (787)
..||.-+=-.| .++.++..|.+++...+ |..|-..+|-..|..=.+.++++.+..+|++.++-.+-|..+|.-.
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKY 477 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHH
Confidence 44554443333 35567777777777766 5677777787777777788888888888888777556677777777
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
...=...|+.+.|..+|+-.+++..+.--...|.+.|+--...|.++.|..+|+++++
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 7777777888888888887776643333456777777777778888888888888776
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.08 E-value=8e-08 Score=95.91 Aligned_cols=194 Identities=11% Similarity=0.096 Sum_probs=163.7
Q ss_pred HhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 003913 304 LHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEF 383 (787)
Q Consensus 304 ~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 383 (787)
+..+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...|...|++
T Consensus 38 a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~g~~ 115 (234)
T TIGR02521 38 ALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLCQQGKY 115 (234)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcccH
Confidence 377788999999999999988752 234667888899999999999999999999987654 567788899999999999
Q ss_pred HHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003913 384 MKSLEIFREMQERLGS-ASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462 (787)
Q Consensus 384 ~~A~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (787)
++|.+.|++....... .....+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++++|...+++
T Consensus 116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 116 EQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLER 194 (234)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999875322 234567778889999999999999999998754 33567888999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 463 CLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 463 m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
..+..+.+...+..++..+...|+.++|..+.+.+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 195 YQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 98755667788888899999999999999998887654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.9e-08 Score=98.72 Aligned_cols=283 Identities=12% Similarity=0.024 Sum_probs=224.1
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 003913 308 QDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSL 387 (787)
Q Consensus 308 ~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 387 (787)
...|++.+|+++..+-.+.|-.| ...|..-..+--+.|+.+.+-+++.+.-+.-..++..++-+........|+++.|.
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 45789999999999877765443 34566667777889999999999999988855667888888899999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHH
Q 003913 388 EIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLM-------PSYINLTNMYLNLGMHDRLHLAF 460 (787)
Q Consensus 388 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~li~~~~~~g~~~~a~~~~ 460 (787)
.-.+++.+.+.. +.........+|.+.|++.....++..|.+.|+--+. .+|..+++=....+..+.-...|
T Consensus 174 ~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 999999887554 5677788899999999999999999999998876653 46788888777777777777788
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCcc
Q 003913 461 SECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEI 540 (787)
Q Consensus 461 ~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 540 (787)
+...+..+.++..-.+++.-+.++|+.++|.++.++..+++ ..|+ -...-.+.+-++.+.=++..+.-.+ ..+-
T Consensus 253 ~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~-~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~-~h~~ 326 (400)
T COG3071 253 KNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ-WDPR----LCRLIPRLRPGDPEPLIKAAEKWLK-QHPE 326 (400)
T ss_pred HhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc-cChh----HHHHHhhcCCCCchHHHHHHHHHHH-hCCC
Confidence 88877666777788888999999999999999999988887 4444 2233455677777766666666554 1112
Q ss_pred CHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHc
Q 003913 541 ESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQY 618 (787)
Q Consensus 541 ~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~ 618 (787)
+ +..+.+|...|.+++.+.+|...++ +...| +...+..+++.|.+.
T Consensus 327 ~-------------------------------p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~ 374 (400)
T COG3071 327 D-------------------------------PLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQL 374 (400)
T ss_pred C-------------------------------hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHc
Confidence 2 3678899999999999999999988 55555 677899999999999
Q ss_pred hhhcCCCccccC
Q 003913 619 HEWLHPSFKVSD 630 (787)
Q Consensus 619 g~~~~A~~~~~~ 630 (787)
|+..+|.....+
T Consensus 375 g~~~~A~~~r~e 386 (400)
T COG3071 375 GEPEEAEQVRRE 386 (400)
T ss_pred CChHHHHHHHHH
Confidence 998887666543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-07 Score=100.81 Aligned_cols=246 Identities=16% Similarity=0.146 Sum_probs=181.6
Q ss_pred cCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHc-----C-CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003913 289 SGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQA-----G-FEEGKEV-LLSVLRVCAKEGDVEDAEKTWLRLLES 361 (787)
Q Consensus 289 ~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~-----g-~~p~~~t-~~~li~~~~~~g~~~~A~~~~~~m~~~ 361 (787)
.+-.+.............|...|+++.|..+++...+. | ..|...+ .+.+...|...+++++|..+|+++...
T Consensus 191 ~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i 270 (508)
T KOG1840|consen 191 LGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI 270 (508)
T ss_pred cccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 33333344444444568899999999999999877653 2 2344443 345777889999999999999998763
Q ss_pred -----CCC-C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH---c--CC-CCCHH-HHHHHHHHHHhcCChHHHHHHHHH
Q 003913 362 -----DNG-I-PTPAFVYKMEAYAKIGEFMKSLEIFREMQE---R--LG-SASVP-AYHKIIELLCKAEETELTESLMKE 427 (787)
Q Consensus 362 -----~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~--g~-~p~~~-t~~~li~~~~~~g~~~~A~~l~~~ 427 (787)
|.. | -..+++.|..+|++.|++++|...+++..+ + |. .|.+. .++.++..|+..+++++|..+++.
T Consensus 271 ~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 271 REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK 350 (508)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 221 1 134567778899999999999988887642 1 22 22232 367788889999999999999988
Q ss_pred HHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCC--C-CHHHHHHHHHHHHhcCCHHHHHH
Q 003913 428 FVET---GMKPL----MPSYINLTNMYLNLGMHDRLHLAFSECLE-----KCR--P-NRTIYGIYLESLKNAGNIEKAEE 492 (787)
Q Consensus 428 m~~~---g~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~--p-~~~~~~~li~~~~~~g~~~~A~~ 492 (787)
..+. -..++ ..+++.|...|.+.|++++|.++|++++. +.. + .-..++.|...|.+.+++++|.+
T Consensus 351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~ 430 (508)
T KOG1840|consen 351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ 430 (508)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence 7652 12222 46899999999999999999999999875 111 2 24567888999999999999999
Q ss_pred HHHHhh----hCCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 493 IFNHMH----SDQTIGVN-TRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 493 l~~~m~----~~~~~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
+|.+.. .-|.-.|+ ..+|..|...|.+.|++++|+++.+...
T Consensus 431 l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 431 LFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 998743 33433344 4689999999999999999999998877
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-08 Score=111.30 Aligned_cols=255 Identities=15% Similarity=0.099 Sum_probs=171.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHH
Q 003913 239 SIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISL 318 (787)
Q Consensus 239 ~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~ 318 (787)
.++-.|... |+.|+.+||..+|.-||.. |+.+.|- +|.-|....+..+..+++.++ .+....++.+.+.
T Consensus 11 nfla~~e~~-gi~PnRvtyqsLiarYc~~------gdieaat-if~fm~~ksLpv~e~vf~~lv--~sh~~And~Enpk- 79 (1088)
T KOG4318|consen 11 NFLALHEIS-GILPNRVTYQSLIARYCTK------GDIEAAT-IFPFMEIKSLPVREGVFRGLV--ASHKEANDAENPK- 79 (1088)
T ss_pred hHHHHHHHh-cCCCchhhHHHHHHHHccc------CCCcccc-chhhhhcccccccchhHHHHH--hcccccccccCCC-
Confidence 345666665 8999999999999999987 6888888 999999999888999999999 6767777666553
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-------CCCCCCHHH--------------HHHHHHHH
Q 003913 319 LKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLE-------SDNGIPTPA--------------FVYKMEAY 377 (787)
Q Consensus 319 l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~~~~~~--------------~~~li~~~ 377 (787)
.|...||..|+.+|...||+..-..+=+.|.. .|+.....- -...+...
T Consensus 80 ----------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illl 149 (1088)
T KOG4318|consen 80 ----------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLL 149 (1088)
T ss_pred ----------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHH
Confidence 78899999999999999997652222111221 222111100 01123333
Q ss_pred HHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003913 378 AKIGEFMKSLEIFREMQER-LGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRL 456 (787)
Q Consensus 378 ~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 456 (787)
.-.|.++.+++++..|... ...|-.+ +++-+.... .-..++........-.|+..+|..++++-...|+++.|
T Consensus 150 v~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~A 223 (1088)
T KOG4318|consen 150 VLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGA 223 (1088)
T ss_pred HHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhH
Confidence 4444555555555444321 1111111 233332222 22233333333211158888999999998899999999
Q ss_pred HHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHH
Q 003913 457 HLAFSECLE-KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFV 524 (787)
Q Consensus 457 ~~~~~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 524 (787)
..++.+|.+ |.+.+..-|-.|+-+ .|...-++.++.-|.+.| +.|+..|+...+-.+..+|...
T Consensus 224 k~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~g-v~p~seT~adyvip~l~N~~t~ 288 (1088)
T KOG4318|consen 224 KNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKG-VQPGSETQADYVIPQLSNGQTK 288 (1088)
T ss_pred HHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhc-CCCCcchhHHHHHhhhcchhhh
Confidence 999999988 888888877777766 788888888888888888 8899999888888888766633
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.6e-06 Score=84.72 Aligned_cols=412 Identities=11% Similarity=0.127 Sum_probs=203.1
Q ss_pred cCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHH
Q 003913 157 IRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDE 236 (787)
Q Consensus 157 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~ 236 (787)
.+++..|..+|+...... ..+...|-.-+.+=.|+..+..|..+++.....=...|..=|--+. .=- ..|++.-
T Consensus 86 q~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~y-mEE---~LgNi~g 159 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIY-MEE---MLGNIAG 159 (677)
T ss_pred HHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHH-HHH---HhcccHH
Confidence 345566666666666654 3355566666666666666666666666655431111222222111 111 2466666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHH
Q 003913 237 ACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERI 316 (787)
Q Consensus 237 A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a 316 (787)
|.++|..=.. ..|+.-.|++.|+-=.+- ..++.|..+++..+-.. | .+-+++-.+..--+.|....|
T Consensus 160 aRqiferW~~---w~P~eqaW~sfI~fElRy------keieraR~IYerfV~~H--P--~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 160 ARQIFERWME---WEPDEQAWLSFIKFELRY------KEIERARSIYERFVLVH--P--KVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHHHHHHHc---CCCcHHHHHHHHHHHHHh------hHHHHHHHHHHHHheec--c--cHHHHHHHHHHHHhcCcHHHH
Confidence 6666666543 466666666666654443 35666666666665322 2 233333333555556666666
Q ss_pred HHHHHHHHHc-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCC---hHHHHH--
Q 003913 317 SLLKKEMQQA-GF-EEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIP-TPAFVYKMEAYAKIGE---FMKSLE-- 388 (787)
Q Consensus 317 ~~l~~~m~~~-g~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~---~~~A~~-- 388 (787)
..+|....+. |- ..+...+++....=..+..++.|.-+|+..+..-+.-. ...|......=-+-|+ +++++-
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 6666555432 10 00122233333333345556666666666555432211 1222222222222233 222221
Q ss_pred ---HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---HhcCCHHH
Q 003913 389 ---IFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLM-------PSYINLTNMY---LNLGMHDR 455 (787)
Q Consensus 389 ---~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~li~~~---~~~g~~~~ 455 (787)
-|+.+...+ +-|-.+|--.+..--..|+.+...++|++.+.. ++|-. ++|.-+=-++ ....+++.
T Consensus 307 Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 307 RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 123333332 235555555555555666666666666666653 34421 1222211111 13456666
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 003913 456 LHLAFSECLEKCRPNRTIYGIYLESLK----NAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYD 531 (787)
Q Consensus 456 a~~~~~~m~~~~~p~~~~~~~li~~~~----~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 531 (787)
+.++|+.+++-++-...||.-+--+|+ ++.++..|.+++...+.. -|-..+|...|..-.+.+.++...++|+
T Consensus 385 tr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~---cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 385 TRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK---CPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc---CCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 666666666655555555555544444 355666666666666544 2566666666666666666666666666
Q ss_pred HHHHcCCccCHHHHHH---HHHHH-hhcc-----cccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE
Q 003913 532 LMCLKKYEIESAWMEK---LDYVL-SLNR-----KEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR 597 (787)
Q Consensus 532 ~m~~~g~~~~p~~~~~---l~~~~-~l~~-----~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 597 (787)
+.++ -+|..... +...- .|+. ......++ +...+....+|.+.+.--...|.++.++.+++
T Consensus 462 kfle----~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~-qp~ldmpellwkaYIdFEi~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 462 KFLE----FSPENCYAWSKYAELETSLGDTDRARAIFELAIS-QPALDMPELLWKAYIDFEIEEGEFEKARALYE 531 (677)
T ss_pred HHHh----cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc-CcccccHHHHHHHhhhhhhhcchHHHHHHHHH
Confidence 6665 34432111 11100 0000 00000000 00011126777777777777777777777776
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.7e-07 Score=87.24 Aligned_cols=204 Identities=15% Similarity=0.150 Sum_probs=98.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 335 LLSVLRVCAKEGDVEDAEKTWLRLLESD-NGIP--TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL 411 (787)
Q Consensus 335 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 411 (787)
--+|-+.|.+.|.+|.|.++++.+.+.- ..-+ ..+.-.|..-|...|-+|.|..+|..+.+.+.. -......|+..
T Consensus 72 ~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~I 150 (389)
T COG2956 72 HLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNI 150 (389)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHH
Confidence 3344444555555555555555444431 1000 111223444455555555555555555543211 22334445555
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 003913 412 LCKAEETELTESLMKEFVETGMKPL----MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI 487 (787)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~ 487 (787)
|-...++++|.++-+++.+.|-.+. ..-|.-|...+....+++.|..++.+..+-.+..+.+--.+.+.+...|++
T Consensus 151 YQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y 230 (389)
T COG2956 151 YQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDY 230 (389)
T ss_pred HHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccch
Confidence 5555555555555555555433332 223444555555555555555555555543333444444455555555555
Q ss_pred HHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCH
Q 003913 488 EKAEEIFNHMHSDQTIGVN--TRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIES 542 (787)
Q Consensus 488 ~~A~~l~~~m~~~~~~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p 542 (787)
+.|.+.++...+.+ |+ ..+...|..+|.+.|+.++...++.++.+..-++++
T Consensus 231 ~~AV~~~e~v~eQn---~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 231 QKAVEALERVLEQN---PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred HHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence 55555555555554 22 234445555555555555555555555554433333
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-07 Score=107.83 Aligned_cols=215 Identities=12% Similarity=0.020 Sum_probs=166.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH---------hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 003913 311 IDKERISLLKKEMQQAGFEEGK-EVLLSVLRVCA---------KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKI 380 (787)
Q Consensus 311 g~~~~a~~l~~~m~~~g~~p~~-~t~~~li~~~~---------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 380 (787)
.+.++|..+|++..+ ..|+. ..|..+..++. ..+++++|...+++..+.++. +..++..+...+...
T Consensus 275 ~~~~~A~~~~~~Al~--ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVN--MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHc
Confidence 346789999998886 46654 34555544443 234589999999999998754 678888898999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 003913 381 GEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL-MPSYINLTNMYLNLGMHDRLHLA 459 (787)
Q Consensus 381 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~ 459 (787)
|++++|...|++..+.+ +.+...|..+...+...|++++|...+++..+. .|+ ...+..++..+...|++++|...
T Consensus 352 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 352 SEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999998874 225667888999999999999999999999985 344 33444455567778999999999
Q ss_pred HHHHHhcCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 460 FSECLEKCRP-NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 460 ~~~m~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+++..+..+| +...+..+...|...|++++|...+.++.... +.+....+.+...|...| ++|...++.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE--ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc--chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 9998874444 56668888899999999999999999987653 233455566666778777 588888888765
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.9e-06 Score=92.81 Aligned_cols=297 Identities=18% Similarity=0.174 Sum_probs=199.8
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHH-HHHHHhc
Q 003913 149 YLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHI-LIVAYLS 227 (787)
Q Consensus 149 ~~~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~-li~~~~~ 227 (787)
|-...+...|++++|++.++.-.+. +.............|.+.|+.++|..++..+.+++ |+...|.. +..+...
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhh
Confidence 3334666889999999999876554 55567778888899999999999999999999986 55555544 4444421
Q ss_pred CC--cCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHH-HHHHHHHHHHHcCCccCHHHHHHHHHH
Q 003913 228 AP--VQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQ-QAEFIFHNLLTSGLEIQKDIYSGLIWL 304 (787)
Q Consensus 228 ~~--~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~-~A~~~~~~m~~~~~~p~~~~~~~li~~ 304 (787)
.. .....+...++|+++... -|.......+.-.+.. | ..+. .+...+..++..|++ .+++.+-
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~---yp~s~~~~rl~L~~~~--g----~~F~~~~~~yl~~~l~KgvP---slF~~lk-- 150 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEK---YPRSDAPRRLPLDFLE--G----DEFKERLDEYLRPQLRKGVP---SLFSNLK-- 150 (517)
T ss_pred hcccccccHHHHHHHHHHHHHh---CccccchhHhhcccCC--H----HHHHHHHHHHHHHHHhcCCc---hHHHHHH--
Confidence 00 123577788899988764 3554444333322222 1 1333 566677788888874 4566555
Q ss_pred hhhccCCCHHHHHHHHHHHHHc----C----------CCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 003913 305 HSYQDNIDKERISLLKKEMQQA----G----------FEEGK--EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTP 368 (787)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~----g----------~~p~~--~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 368 (787)
..|.......-...++...... | -.|.. .++.-+...|-..|++++|.++.++.++..+. .+.
T Consensus 151 ~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~e 229 (517)
T PF12569_consen 151 PLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVE 229 (517)
T ss_pred HHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHH
Confidence 3344443444445555554432 1 12333 24456667777889999999999888887643 367
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH--------H
Q 003913 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPS--------Y 440 (787)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--------~ 440 (787)
.|..-...|-..|++.+|.+.++........ |...=+-....+.++|++++|.+++....+.+..|-... .
T Consensus 230 ly~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~ 308 (517)
T PF12569_consen 230 LYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFE 308 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHH
Confidence 7778888888899999999988888876443 666777778888889999999988888877665432211 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 003913 441 INLTNMYLNLGMHDRLHLAFSECLE 465 (787)
Q Consensus 441 ~~li~~~~~~g~~~~a~~~~~~m~~ 465 (787)
.-...+|.+.|++..|++-|..+.+
T Consensus 309 ~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 309 TECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3446678888888888777776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-06 Score=93.64 Aligned_cols=406 Identities=9% Similarity=0.044 Sum_probs=264.4
Q ss_pred CccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHH
Q 003913 176 YRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPS 255 (787)
Q Consensus 176 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~ 255 (787)
+..|..+|..|.-++.++|++..+.+.|++....- .-....|+.+-..|. -.|.-..|+.+.+.-.... -.|+..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~s---aag~~s~Av~ll~~~~~~~-~~ps~~ 393 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYS---AAGSDSKAVNLLRESLKKS-EQPSDI 393 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHH---HhccchHHHHHHHhhcccc-cCCCcc
Confidence 66788999999999999999999999999976532 225678888888888 6888999999998876531 125444
Q ss_pred H-HHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHc--CCc--cCHHHHHHHHHHhhh--ccCCC-------HHHHHHHHH
Q 003913 256 L-HNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTS--GLE--IQKDIYSGLIWLHSY--QDNID-------KERISLLKK 321 (787)
Q Consensus 256 t-~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~--~~~--p~~~~~~~li~~~~~--~~~g~-------~~~a~~l~~ 321 (787)
+ +-..-..|.+.. |.++++..+-.+++.. +.. .....|-.+...++. ..... ..++++.++
T Consensus 394 s~~Lmasklc~e~l-----~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale 468 (799)
T KOG4162|consen 394 SVLLMASKLCIERL-----KLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALE 468 (799)
T ss_pred hHHHHHHHHHHhch-----hhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH
Confidence 4 444444455543 4777777777666652 111 111222222211221 11111 245677777
Q ss_pred HHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCC
Q 003913 322 EMQQAG-FEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER-LGS 399 (787)
Q Consensus 322 ~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~ 399 (787)
+..+.+ -.|+..-|-++ -|+..++++.|.+..++..+.+..-+...|..|.-.+...+++.+|+.+.+...+. |.
T Consensus 469 ~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~- 545 (799)
T KOG4162|consen 469 EAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD- 545 (799)
T ss_pred HHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-
Confidence 776643 44544444444 46688999999999999999977778999999999999999999999999876543 21
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH---------------------cCCC-----C--CHHHHHHHHHHHHhcC
Q 003913 400 ASVPAYHKIIELLCKAEETELTESLMKEFVE---------------------TGMK-----P--LMPSYINLTNMYLNLG 451 (787)
Q Consensus 400 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~---------------------~g~~-----p--~~~t~~~li~~~~~~g 451 (787)
|.+....-++.=...++.++|+.....+.. .|+. | ...++..+..-....+
T Consensus 546 -N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~ 624 (799)
T KOG4162|consen 546 -NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL 624 (799)
T ss_pred -hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh
Confidence 211111112222224555555544443322 0110 0 1122222222111111
Q ss_pred CHHHHHHHHHHHHh-c--CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCC
Q 003913 452 MHDRLHLAFSECLE-K--CRPN------RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGD 522 (787)
Q Consensus 452 ~~~~a~~~~~~m~~-~--~~p~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~ 522 (787)
+.+..-.. +.+ . -.|+ ...|....+.+.+.++.++|...+.+.... .+-....|......+...|.
T Consensus 625 --~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~ 699 (799)
T KOG4162|consen 625 --KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQ 699 (799)
T ss_pred --hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHh
Confidence 00000000 111 1 1222 345667788899999999999999988876 35677888888888999999
Q ss_pred HHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcce--eEE--E
Q 003913 523 FVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRH--MIR--F 598 (787)
Q Consensus 523 ~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~--~~~--~ 598 (787)
+++|.+.|..... ++|+. ..+..+|...+...|+-..+.. +.. +
T Consensus 700 ~~EA~~af~~Al~----ldP~h----------------------------v~s~~Ala~~lle~G~~~la~~~~~L~dal 747 (799)
T KOG4162|consen 700 LEEAKEAFLVALA----LDPDH----------------------------VPSMTALAELLLELGSPRLAEKRSLLSDAL 747 (799)
T ss_pred hHHHHHHHHHHHh----cCCCC----------------------------cHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Confidence 9999999998886 88874 5566777777777787666665 444 8
Q ss_pred EEccCCcccHHHHHHHHHHchhhcCCCccccCCC
Q 003913 599 QFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGN 632 (787)
Q Consensus 599 ~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~ 632 (787)
.++|.++.++..|+.++.+.|+.+.|...|..+.
T Consensus 748 r~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 748 RLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred hhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 8999999999999999999999999988884443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.4e-08 Score=95.83 Aligned_cols=229 Identities=12% Similarity=0.063 Sum_probs=194.3
Q ss_pred HhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHHcCC
Q 003913 304 LHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFV-YKMEAYAKIGE 382 (787)
Q Consensus 304 ~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~ 382 (787)
..+|.+.|.+.+|.+.|+.-.+. .|-+.||..|-.+|.+....+.|..++.+-.+.- |-.+||- -+...+-..++
T Consensus 230 gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f--P~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 230 GKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF--PFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--CchhhhhhhhHHHHHHHHh
Confidence 47888899999999999887774 6777889999999999999999999999888764 4445554 46788888899
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003913 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462 (787)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (787)
.++|.++|++..+.. +-|+.+...+..+|.-.++++-|+..++++++.|+. +...|+.+.-+|.-.++++-++.-|..
T Consensus 306 ~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 999999999988763 346777777888899999999999999999999954 688999999999999999999999999
Q ss_pred HHh-cCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCc
Q 003913 463 CLE-KCRPN--RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYE 539 (787)
Q Consensus 463 m~~-~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 539 (787)
... --.|+ ..+|-.|....+..|++.-|...|+-....+ +.+...+|.|.-.-.+.|+.++|..+++....
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d--~~h~ealnNLavL~~r~G~i~~Arsll~~A~s---- 457 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD--AQHGEALNNLAVLAARSGDILGARSLLNAAKS---- 457 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC--cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh----
Confidence 886 33344 4678889888999999999999999998876 45778999999999999999999999998876
Q ss_pred cCHHH
Q 003913 540 IESAW 544 (787)
Q Consensus 540 ~~p~~ 544 (787)
+.|+.
T Consensus 458 ~~P~m 462 (478)
T KOG1129|consen 458 VMPDM 462 (478)
T ss_pred hCccc
Confidence 56664
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.8e-06 Score=94.39 Aligned_cols=295 Identities=15% Similarity=0.136 Sum_probs=186.9
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003913 187 ADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVS 266 (787)
Q Consensus 187 i~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~ 266 (787)
+..+...|++++|++.++.-... .+|..+|.-.-.-+.. +.|+.++|..+|+.+++. .|+...|...+..+..
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~--kLg~~~eA~~~y~~Li~r---NPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLL--KLGRKEEAEKIYRELIDR---NPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHh
Confidence 34578899999999999885544 3577776665555443 899999999999999985 5898888877777662
Q ss_pred CCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003913 267 KPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNID-KERISLLKKEMQQAGFEEGKEVLLSVLRVCAKE 345 (787)
Q Consensus 267 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~-~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 345 (787)
..........+....+++++...-+ .......+. ..+..... ...+...+..+...|+++ +|+.|-..|...
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp--~s~~~~rl~--L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~ 156 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYP--RSDAPRRLP--LDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDP 156 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCc--cccchhHhh--cccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcCh
Confidence 2111111357788888888866553 233333332 11111111 234556667777777653 566666666655
Q ss_pred CChHHHHHHHHHHHhC----C----------CCCCHH--HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 003913 346 GDVEDAEKTWLRLLES----D----------NGIPTP--AFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS-VPAYHKI 408 (787)
Q Consensus 346 g~~~~A~~~~~~m~~~----~----------~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 408 (787)
.+.+-..+++...... + -.|... ++.-+...|-..|++++|++++++.++. .|+ +..|..-
T Consensus 157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~K 234 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTK 234 (517)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHH
Confidence 5555555555554432 1 123332 3345566777788888888888877765 444 4567777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCC--CHH----HH--HHHHH
Q 003913 409 IELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRP--NRT----IY--GIYLE 479 (787)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p--~~~----~~--~~li~ 479 (787)
...+-..|++.+|.+.++..+... .-|...-+-.+..+.++|++++|.+++....+ +..| |.. .| .....
T Consensus 235 arilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~ 313 (517)
T PF12569_consen 235 ARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAE 313 (517)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHH
Confidence 777778888888888888877755 33566666677777778888888877777665 2222 111 22 23356
Q ss_pred HHHhcCCHHHHHHHHHHhh
Q 003913 480 SLKNAGNIEKAEEIFNHMH 498 (787)
Q Consensus 480 ~~~~~g~~~~A~~l~~~m~ 498 (787)
+|.+.|++..|++-|....
T Consensus 314 a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 314 AYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 6777777777766655543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.4e-05 Score=83.19 Aligned_cols=483 Identities=12% Similarity=0.102 Sum_probs=268.0
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCC------CCCCHhHHHHHHHHHh
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQG------RVPSEMTFHILIVAYL 226 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g------~~pd~~ty~~li~~~~ 226 (787)
-....+-++-+.+++++-.+-. ...-+--|..+++.+++++|.+.+....... -+-+...|+-+-.-.+
T Consensus 147 Fv~~~~lPets~rvyrRYLk~~-----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis 221 (835)
T KOG2047|consen 147 FVESHGLPETSIRVYRRYLKVA-----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLIS 221 (835)
T ss_pred HHHhCCChHHHHHHHHHHHhcC-----HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHH
Confidence 3446677788888888887643 2335667788888888888888888776532 1224455666666555
Q ss_pred cCCcCCCHHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 003913 227 SAPVQGCLDEACSIYNRMIQLGGYQPRP--SLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWL 304 (787)
Q Consensus 227 ~~~~~g~~~~A~~l~~~m~~~~g~~pd~--~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 304 (787)
++-+.-.-+.+=.-|+.--+.-||. ..|++|-+-|.+. |.++.|..++++.+..-..... ++.+...
T Consensus 222 ---~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~------g~~ekarDvyeeai~~v~tvrD--Ft~ifd~ 290 (835)
T KOG2047|consen 222 ---QNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS------GLFEKARDVYEEAIQTVMTVRD--FTQIFDA 290 (835)
T ss_pred ---hCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHhheehhh--HHHHHHH
Confidence 3444444444433333311233454 3577888888876 7899999999887765433222 2222211
Q ss_pred hhhc--------------cCCC------HHHHHHHHHHHHHcCC----------CC-CHHHHHHHHHHHHhcCChHHHHH
Q 003913 305 HSYQ--------------DNID------KERISLLKKEMQQAGF----------EE-GKEVLLSVLRVCAKEGDVEDAEK 353 (787)
Q Consensus 305 ~~~~--------------~~g~------~~~a~~l~~~m~~~g~----------~p-~~~t~~~li~~~~~~g~~~~A~~ 353 (787)
++.. ..++ ++-.+.-|+.+...+. .| ++.+|..-+. +..|+..+-..
T Consensus 291 Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~ 368 (835)
T KOG2047|consen 291 YAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQIN 368 (835)
T ss_pred HHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHH
Confidence 1110 0000 1111222222221110 01 1122222211 13456666666
Q ss_pred HHHHHHhC-CC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHH
Q 003913 354 TWLRLLES-DN----GIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS---VPAYHKIIELLCKAEETELTESLM 425 (787)
Q Consensus 354 ~~~~m~~~-~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~A~~l~ 425 (787)
++.+..+. ++ ..-...|..+.+.|-..|+++.|..+|++..+...+-= ..+|..-...=.++.+++.|+.++
T Consensus 369 tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm 448 (835)
T KOG2047|consen 369 TYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLM 448 (835)
T ss_pred HHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 67666553 11 11235688889999999999999999998876533211 124444444445667788888877
Q ss_pred HHHHHcCC----------CC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHhcCC
Q 003913 426 KEFVETGM----------KP-------LMPSYINLTNMYLNLGMHDRLHLAFSECLE-K-CRPNRTIYGIYLESLKNAGN 486 (787)
Q Consensus 426 ~~m~~~g~----------~p-------~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~-~~p~~~~~~~li~~~~~~g~ 486 (787)
+.....-- .| ....|...++.--..|-++....+|+.+++ . ..|-+. -.....+-.+.-
T Consensus 449 ~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii--~NyAmfLEeh~y 526 (835)
T KOG2047|consen 449 RRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII--INYAMFLEEHKY 526 (835)
T ss_pred HhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH--HHHHHHHHhhHH
Confidence 76653111 11 123455556666677888889999999987 3 333322 222233445667
Q ss_pred HHHHHHHHHHhhhCCCCCCCH-HHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCccCHHHHHH-------HHHHHhhc
Q 003913 487 IEKAEEIFNHMHSDQTIGVNT-RSCNIILSAYLS---SGDFVKAEKIYDLMCLKKYEIESAWMEK-------LDYVLSLN 555 (787)
Q Consensus 487 ~~~A~~l~~~m~~~~~~~p~~-~t~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~p~~~~~-------l~~~~~l~ 555 (787)
++++.+++++-+..= -.|++ ..|+..+.-+.+ .-..+.|..+|+..++ |.+ |...+. +.+-..+.
T Consensus 527 feesFk~YErgI~LF-k~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cp--p~~aKtiyLlYA~lEEe~GLa 602 (835)
T KOG2047|consen 527 FEESFKAYERGISLF-KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCP--PEHAKTIYLLYAKLEEEHGLA 602 (835)
T ss_pred HHHHHHHHHcCCccC-CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCC--HHHHHHHHHHHHHHHHHhhHH
Confidence 889999988877663 23443 467777665553 3358999999999996 654 432221 11111222
Q ss_pred ccccc--cccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHH--HHHHHHHchhhcCCCcccc
Q 003913 556 RKEVK--KPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVL--RRYLYDQYHEWLHPSFKVS 629 (787)
Q Consensus 556 ~~~~~--~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~--l~~~y~~~g~~~~A~~~~~ 629 (787)
+..+. ..........+....|+..|.-.+..=-+..-+.+++ ++.-|++..-... .+++-.+.|.++.|...+.
T Consensus 603 r~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya 682 (835)
T KOG2047|consen 603 RHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYA 682 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 22221 1223344445556777777753332222233334444 4445655443333 4778888999999888874
Q ss_pred CCCCCc-----ceEEeeeccchHHHHHHhhccCcccccccch
Q 003913 630 DGNDDI-----PYKYSTISHPYFCFYADKFWPKGRLVIPKLI 666 (787)
Q Consensus 630 ~~~~~~-----p~~~~t~~~~~~~~~~~g~~~~a~~~~~~mi 666 (787)
-+.+.. +..|.+|.. .-.++|. +..+.+|+
T Consensus 683 ~~sq~~dPr~~~~fW~twk~---FEvrHGn----edT~keML 717 (835)
T KOG2047|consen 683 HGSQICDPRVTTEFWDTWKE---FEVRHGN----EDTYKEML 717 (835)
T ss_pred hhhhcCCCcCChHHHHHHHH---HHHhcCC----HHHHHHHH
Confidence 443332 233666655 4455554 34455555
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-06 Score=90.12 Aligned_cols=218 Identities=15% Similarity=0.085 Sum_probs=151.4
Q ss_pred CCCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 003913 310 NIDKERISLLKKEMQQAG-FEEG--KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKS 386 (787)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g-~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 386 (787)
.+..+.++.-+.++.... ..|+ ...|..+...|...|+.++|...|.+..+..+. +...|+.+...|...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 344566666666666432 2332 345777777888999999999999999888754 678899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003913 387 LEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK 466 (787)
Q Consensus 387 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 466 (787)
...|++..+.... +..+|..+..++...|++++|.+.+++..+. .|+..........+...++.++|...|......
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999999875322 4667888888899999999999999998874 444322222222344567899999999776653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 467 CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTI-----GVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 467 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-----~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
..|+...| .+ .+...|+..++ +.++.+.+.... +....+|..+...+.+.|++++|+..|++..+
T Consensus 195 ~~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 195 LDKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred CCccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33433222 22 22334555444 344444422100 11346899999999999999999999999987
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.9e-06 Score=93.12 Aligned_cols=244 Identities=19% Similarity=0.267 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHC-----C-CCCCHhHH-HHHHHHHhcCCcCCCHHHHHHHHHHHHHh-----
Q 003913 180 FALATKLADYMGKERKFAKCRDIFDDIINQ-----G-RVPSEMTF-HILIVAYLSAPVQGCLDEACSIYNRMIQL----- 247 (787)
Q Consensus 180 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-----g-~~pd~~ty-~~li~~~~~~~~~g~~~~A~~l~~~m~~~----- 247 (787)
..+...|..+|...|+++.|..++.+-.+. | ..|.+.+- +.+-..|. ..+++++|..+|+++...
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~---~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYR---SLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHHhc
Confidence 445666999999999999999999987653 2 12344433 23445566 689999999999998753
Q ss_pred CCCCCCH-HHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHc
Q 003913 248 GGYQPRP-SLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQA 326 (787)
Q Consensus 248 ~g~~pd~-~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~ 326 (787)
|...|.+ .+++.|-.+|++. |++++|...+++.. ++++. ..
T Consensus 276 G~~h~~va~~l~nLa~ly~~~------GKf~EA~~~~e~Al------------------------------~I~~~--~~ 317 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQ------GKFAEAEEYCERAL------------------------------EIYEK--LL 317 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhcc------CChHHHHHHHHHHH------------------------------HHHHH--hh
Confidence 1222322 2344444455554 57777777765543 23332 11
Q ss_pred CC-CCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 003913 327 GF-EEGKE-VLLSVLRVCAKEGDVEDAEKTWLRLLES---DNGIP----TPAFVYKMEAYAKIGEFMKSLEIFREMQERL 397 (787)
Q Consensus 327 g~-~p~~~-t~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 397 (787)
|. .|.+. .++.+...|+..+++++|..+++...+. -+.++ ..+++.|...|.+.|++++|.++|++...+.
T Consensus 318 ~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 318 GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 21 22332 3567777888889999988888765542 11112 3467778888888888888888888765431
Q ss_pred ----C--CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003913 398 ----G--SAS-VPAYHKIIELLCKAEETELTESLMKEFVE----TGM-KPL-MPSYINLTNMYLNLGMHDRLHLAFSECL 464 (787)
Q Consensus 398 ----~--~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~----~g~-~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~ 464 (787)
- .+. -..++.|...|.+.+..++|.++|.+... .|. .|+ ..+|..|...|.+.|++++|.++.+...
T Consensus 398 ~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 398 RELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1 111 23456666777777777777777766443 111 111 3445555555555555555555544443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6e-06 Score=86.65 Aligned_cols=268 Identities=12% Similarity=0.041 Sum_probs=157.7
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhcc
Q 003913 230 VQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQD 309 (787)
Q Consensus 230 ~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 309 (787)
..+++.+..++++...+.+++.++ .+..=|.++... |+..+-..+=+++++.-+. ...+|+..+.-|--
T Consensus 256 ~~c~f~~c~kit~~lle~dpfh~~--~~~~~ia~l~el------~~~n~Lf~lsh~LV~~yP~---~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 256 YGCRFKECLKITEELLEKDPFHLP--CLPLHIACLYEL------GKSNKLFLLSHKLVDLYPS---KALSWFAVGCYYLM 324 (611)
T ss_pred HcChHHHHHHHhHHHHhhCCCCcc--hHHHHHHHHHHh------cccchHHHHHHHHHHhCCC---CCcchhhHHHHHHH
Confidence 455666666666666554333333 223333333332 2333333344444443322 11222222233333
Q ss_pred CCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHH
Q 003913 310 NIDKERISLLKKEMQQAGFEEG-KEVLLSVLRVCAKEGDVEDAEKTWLRLLES--DNGIPTPAFVYKMEAYAKIGEFMKS 386 (787)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A 386 (787)
.|...+|.+.|.+... +.|. ...|-...+.|+-.|.-|+|...+...-+. |.. -+..| +.--|.+.+..+-|
T Consensus 325 i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~n~kLA 399 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTNNLKLA 399 (611)
T ss_pred hcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhccHHHH
Confidence 3555666666654432 2332 234555666666666666666655554443 211 11222 23355666666777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CC---C-CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003913 387 LEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVET--GM---K-PLMPSYINLTNMYLNLGMHDRLHLAF 460 (787)
Q Consensus 387 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--g~---~-p~~~t~~~li~~~~~~g~~~~a~~~~ 460 (787)
.+.|.+.... .+-|+...+-+.-.....+.+.+|..+|+..+.. .+ + --..+++.|.++|.+.+++++|+..|
T Consensus 400 e~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 400 EKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 7776666543 2224555555555555566677777776665521 00 1 13567899999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 003913 461 SECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAY 517 (787)
Q Consensus 461 ~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~ 517 (787)
+..+..++.|..+|.++.-.|...|+++.|.+.|.+.... .||..+-..++..+
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l---~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL---KPDNIFISELLKLA 532 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc---CCccHHHHHHHHHH
Confidence 9998888899999999999999999999999999998874 57877766666543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.7e-06 Score=85.09 Aligned_cols=229 Identities=11% Similarity=-0.024 Sum_probs=162.4
Q ss_pred hhHHHHHHHHHHHHHcC-CccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHH
Q 003913 274 YYLQQAEFIFHNLLTSG-LEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEE-GKEVLLSVLRVCAKEGDVEDA 351 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A 351 (787)
+..+.+..-+.+++... +.|+...-.+...+..+...|+.++|...|++..+. .| +...|+.+...+...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 46677777777777543 333333333444457788999999999999998874 45 567899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003913 352 EKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVET 431 (787)
Q Consensus 352 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 431 (787)
...|+...+..+. +..+|..+..++...|++++|.+.|++..+.. |+..........+...++.++|...+.+....
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999999987754 56788889999999999999999999998763 43321222222344567899999999776543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 003913 432 GMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKC-------RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIG 504 (787)
Q Consensus 432 g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~-------~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 504 (787)
. .|+... .. ......|+...+ ..+..+.+.. +....+|..+...|.+.|++++|+..|++..+.+ +
T Consensus 195 ~-~~~~~~-~~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~--~ 267 (296)
T PRK11189 195 L-DKEQWG-WN--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN--V 267 (296)
T ss_pred C-CccccH-HH--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C
Confidence 2 333222 22 333345555544 3555555322 2234689999999999999999999999999875 4
Q ss_pred CCHHHHHHHH
Q 003913 505 VNTRSCNIIL 514 (787)
Q Consensus 505 p~~~t~~~li 514 (787)
||.+-+...+
T Consensus 268 ~~~~e~~~~~ 277 (296)
T PRK11189 268 YNFVEHRYAL 277 (296)
T ss_pred chHHHHHHHH
Confidence 5666555433
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-05 Score=85.48 Aligned_cols=480 Identities=13% Similarity=0.135 Sum_probs=247.9
Q ss_pred hhccccCCcchHHHHH-HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHC-CCCCC
Q 003913 137 AQKKWLRQEDGTYLAV-HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQ-GRVPS 214 (787)
Q Consensus 137 ~~~~~~~p~~~t~~~~-~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-g~~pd 214 (787)
.+.++..|..-.|-.+ .| ++.++.+...|. ..|-.-+..+.+.|++...+..|+..... -+.--
T Consensus 72 ~~vk~~~~T~~~~~~vn~c-----~er~lv~mHkmp---------RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH 137 (835)
T KOG2047|consen 72 AQVKHLCPTDPAYESVNNC-----FERCLVFMHKMP---------RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQH 137 (835)
T ss_pred HHhhccCCCChHHHHHHHH-----HHHHHHHHhcCC---------HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhh
Confidence 4445677777666666 44 344444444442 35556677778889999999998886653 22222
Q ss_pred HhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCc--
Q 003913 215 EMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLE-- 292 (787)
Q Consensus 215 ~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~-- 292 (787)
...|...|.-.- ..+-++-++.+|+.-.+ +.|.. -+--|.-++.. +++++|.+.+...+....-
T Consensus 138 ~rIW~lyl~Fv~---~~~lPets~rvyrRYLk---~~P~~--~eeyie~L~~~------d~~~eaa~~la~vln~d~f~s 203 (835)
T KOG2047|consen 138 DRIWDLYLKFVE---SHGLPETSIRVYRRYLK---VAPEA--REEYIEYLAKS------DRLDEAAQRLATVLNQDEFVS 203 (835)
T ss_pred ccchHHHHHHHH---hCCChHHHHHHHHHHHh---cCHHH--HHHHHHHHHhc------cchHHHHHHHHHhcCchhhhh
Confidence 356777776665 67888889999988876 45654 34455556665 5888888888777543211
Q ss_pred ----cCHHHHHHHHHHhhhccCCC---HHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 003913 293 ----IQKDIYSGLIWLHSYQDNID---KERISLLKKEMQQAGFEEGK--EVLLSVLRVCAKEGDVEDAEKTWLRLLESDN 363 (787)
Q Consensus 293 ----p~~~~~~~li~~~~~~~~g~---~~~a~~l~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 363 (787)
.+.-.+.-+. ....++.+ --.+..+++.+.. .-+|. ..|++|.+-|.+.|+++.|..+|++....-.
T Consensus 204 k~gkSn~qlw~elc--dlis~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~ 279 (835)
T KOG2047|consen 204 KKGKSNHQLWLELC--DLISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM 279 (835)
T ss_pred hcccchhhHHHHHH--HHHHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe
Confidence 0111111111 11111111 1112233333332 23443 3577888888888888888888887766532
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH--HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---------
Q 003913 364 GIPTPAFVYKMEAYAKIGEFMKSLEIFREMQ--ERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETG--------- 432 (787)
Q Consensus 364 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g--------- 432 (787)
.+.-|+.+-++|+.-..-.-+..+= +. +.|-.-+...+ +-...-|+.+...+
T Consensus 280 --tvrDFt~ifd~Ya~FEE~~~~~~me--~a~~~~~n~ed~~dl-------------~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 280 --TVRDFTQIFDAYAQFEESCVAAKME--LADEESGNEEDDVDL-------------ELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred --ehhhHHHHHHHHHHHHHHHHHHHHh--hhhhcccChhhhhhH-------------HHHHHHHHHHHhccchHHHHHHH
Confidence 4455566666665432211111110 10 11111111111 11222222222211
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 003913 433 --MKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN------RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIG 504 (787)
Q Consensus 433 --~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 504 (787)
-.-++.+|..-+. +..|+..+-...|.+..+.+.|- ...|..+.+.|-..|+++.|..+|++..+-. .+
T Consensus 343 RQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~-y~ 419 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP-YK 419 (835)
T ss_pred hcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC-cc
Confidence 1122333333332 23456667777777777644332 3467888888888899999999998887643 11
Q ss_pred C---CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhh
Q 003913 505 V---NTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLG 581 (787)
Q Consensus 505 p---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~ 581 (787)
- -..+|..-...=.++.+++.|+++.++.... |.+..++.+... .+++..+- -...+|.-+++
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v---P~~~~~~~yd~~---------~pvQ~rlh--rSlkiWs~y~D 485 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV---PTNPELEYYDNS---------EPVQARLH--RSLKIWSMYAD 485 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC---CCchhhhhhcCC---------CcHHHHHH--HhHHHHHHHHH
Confidence 1 1346666666677788888888887776632 333211111100 00000110 01344555555
Q ss_pred hhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccccCCCCCcceE-----EeeeccchHHHHHHhh
Q 003913 582 GLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPYK-----YSTISHPYFCFYADKF 654 (787)
Q Consensus 582 ~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~~-----~~t~~~~~~~~~~~g~ 654 (787)
.--..|-++.-+.+++ +.+.--.+..-...+..+.....++++-..++++...-+.. |++|-.....-+....
T Consensus 486 leEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k 565 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK 565 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 4444444444444444 23322223333333444555555666666666666654331 3343333333333333
Q ss_pred ccCcccccccchhhcCChhHHHHHhhcCC
Q 003913 655 WPKGRLVIPKLIHRWLTPRALAYWFMYGG 683 (787)
Q Consensus 655 ~~~a~~~~~~mi~~gl~P~~lay~~m~~g 683 (787)
.+.+..+|++.++ |+.|...-+.++.-+
T Consensus 566 lEraRdLFEqaL~-~Cpp~~aKtiyLlYA 593 (835)
T KOG2047|consen 566 LERARDLFEQALD-GCPPEHAKTIYLLYA 593 (835)
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Confidence 4455566776666 666666555555443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.6e-05 Score=80.11 Aligned_cols=273 Identities=13% Similarity=0.037 Sum_probs=186.8
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCc--cCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcC
Q 003913 250 YQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLE--IQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAG 327 (787)
Q Consensus 250 ~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g 327 (787)
++-|+.....+-..+... |+.++|...|+.....++. -..+.|..|+ ...|+.++...+...+....
T Consensus 228 lr~NvhLl~~lak~~~~~------Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL-----~~eg~~e~~~~L~~~Lf~~~ 296 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYN------GDYFQAEDIFSSTLCANPDNVEAMDLYAVLL-----GQEGGCEQDSALMDYLFAKV 296 (564)
T ss_pred CCccHHHHHHHhhhhhhh------cCchHHHHHHHHHhhCChhhhhhHHHHHHHH-----HhccCHhhHHHHHHHHHhhh
Confidence 333444444444444443 5777777777766544421 1223444443 55566666666666655431
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003913 328 FEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHK 407 (787)
Q Consensus 328 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 407 (787)
.-...-|-.-.......++++.|..+-++.++.+.. +...|..-...+...|+.++|.-.|+..+.-. +-+...|.-
T Consensus 297 -~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~G 373 (564)
T KOG1174|consen 297 -KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRG 373 (564)
T ss_pred -hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHH
Confidence 112222222333344667888888888888776643 55666666777888899999999999877542 236788999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 003913 408 IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLT-NMYLN-LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG 485 (787)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li-~~~~~-~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g 485 (787)
|+..|...|++.+|.-+-++..+. +.-+..+.+.+. ..|.- ...-++|.+++++-++..+.-....+.+...+...|
T Consensus 374 L~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg 452 (564)
T KOG1174|consen 374 LFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEG 452 (564)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhC
Confidence 999999999999988777665552 234455555552 33332 334678999998887754555667888888999999
Q ss_pred CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHH
Q 003913 486 NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAW 544 (787)
Q Consensus 486 ~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~ 544 (787)
+.++++.++++.... .||....+.|...+...+.+.+|+..|...++ ++|..
T Consensus 453 ~~~D~i~LLe~~L~~---~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr----~dP~~ 504 (564)
T KOG1174|consen 453 PTKDIIKLLEKHLII---FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR----QDPKS 504 (564)
T ss_pred ccchHHHHHHHHHhh---ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh----cCccc
Confidence 999999999998885 58999999999999999999999999999886 67764
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.2e-06 Score=90.23 Aligned_cols=406 Identities=9% Similarity=-0.063 Sum_probs=242.1
Q ss_pred CCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcC
Q 003913 211 RVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG 290 (787)
Q Consensus 211 ~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~ 290 (787)
+.-|...|..+--++. +.|++..+-+.|++... +.--....|+.+-..+... |.-..|..+++.-....
T Consensus 319 ~qnd~ai~d~Lt~al~---~~g~f~~lae~fE~~~~--~~~~~~e~w~~~als~saa------g~~s~Av~ll~~~~~~~ 387 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALS---RCGQFEVLAEQFEQALP--FSFGEHERWYQLALSYSAA------GSDSKAVNLLRESLKKS 387 (799)
T ss_pred hcchHHHHHHHHHHHH---HHHHHHHHHHHHHHHhH--hhhhhHHHHHHHHHHHHHh------ccchHHHHHHHhhcccc
Confidence 3446677777777777 67888888888887765 3344444555554444443 46667777777766555
Q ss_pred CccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH--cCC--CCCHHHHHHHHHHHHh-----------cCChHHHHHHH
Q 003913 291 LEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQ--AGF--EEGKEVLLSVLRVCAK-----------EGDVEDAEKTW 355 (787)
Q Consensus 291 ~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~--~g~--~p~~~t~~~li~~~~~-----------~g~~~~A~~~~ 355 (787)
..|+..+.-.++.-.+..+-+..++++..-.+... .|. ......|..+.-+|.. .....++.+.+
T Consensus 388 ~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqal 467 (799)
T KOG4162|consen 388 EQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQAL 467 (799)
T ss_pred cCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHH
Confidence 44443333333322233344455555555444443 111 1123334444444432 12234566667
Q ss_pred HHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CC
Q 003913 356 LRLLESDNG-IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVET-GM 433 (787)
Q Consensus 356 ~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~-g~ 433 (787)
++..+.+.. |++..| +---|+-.++++.|.+..++..+-+-.-+...|.-|.-.+...+++.+|+.+.+..... |.
T Consensus 468 e~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 468 EEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD 545 (799)
T ss_pred HHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Confidence 777666543 333333 44467777888888888888887766667888888888888888888888888776652 21
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------------c------CCC-CHHHHHHHHHHHHhc
Q 003913 434 KPLMPSYINLTNMYLNLGMHDRLHLAFSECLE----------------------K------CRP-NRTIYGIYLESLKNA 484 (787)
Q Consensus 434 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~----------------------~------~~p-~~~~~~~li~~~~~~ 484 (787)
|......-++.-...++.+++......++. + .+. ...++..+..-...
T Consensus 546 --N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~- 622 (799)
T KOG4162|consen 546 --NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS- 622 (799)
T ss_pred --hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh-
Confidence 111111111111123333333333222221 0 011 12222222222211
Q ss_pred CCHHHHHHHHHHhhhCCCCC--CC------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcc
Q 003913 485 GNIEKAEEIFNHMHSDQTIG--VN------TRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNR 556 (787)
Q Consensus 485 g~~~~A~~l~~~m~~~~~~~--p~------~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~ 556 (787)
+.+.+..-.. |...- +. |+ ...|......+.+.+..++|...+.+... +.|-.
T Consensus 623 -~~~~~~se~~-Lp~s~-~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~----~~~l~------------ 683 (799)
T KOG4162|consen 623 -QLKSAGSELK-LPSST-VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK----IDPLS------------ 683 (799)
T ss_pred -hhhhcccccc-cCccc-ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh----cchhh------------
Confidence 1111110000 22111 12 22 35777888899999999999999998875 55543
Q ss_pred cccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCc--cccCCC
Q 003913 557 KEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSF--KVSDGN 632 (787)
Q Consensus 557 ~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~--~~~~~~ 632 (787)
...|.-.....-..|..++|.+.+. +.++|+++.....++.++.+.|+-.-|.. .++++.
T Consensus 684 ----------------~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dal 747 (799)
T KOG4162|consen 684 ----------------ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDAL 747 (799)
T ss_pred ----------------HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Confidence 4455555555666788888988887 89999999999999999999997666655 678899
Q ss_pred CCcceEEeeeccchHHHHHHhhccCcccccccchh
Q 003913 633 DDIPYKYSTISHPYFCFYADKFWPKGRLVIPKLIH 667 (787)
Q Consensus 633 ~~~p~~~~t~~~~~~~~~~~g~~~~a~~~~~~mi~ 667 (787)
..+|.+...|...+..+-..|..+.|-..|.-.+.
T Consensus 748 r~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 748 RLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred hhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 99999999999999999999999988877765443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.9e-05 Score=81.49 Aligned_cols=201 Identities=10% Similarity=0.008 Sum_probs=116.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHH
Q 003913 334 VLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLG-SASV--PAYHKIIE 410 (787)
Q Consensus 334 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~li~ 410 (787)
....+...+...|++++|.+.+++..+..+. +...+..+...|...|++++|...+++...... .|+. ..|..+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 3345556667778888888888877776643 455666777777778888888888777665421 1222 23456677
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--H-HHHHhcCC--CCHHHHHHHHHHH
Q 003913 411 LLCKAEETELTESLMKEFVETGM-KPLMPSY-I--NLTNMYLNLGMHDRLHLA--F-SECLEKCR--PNRTIYGIYLESL 481 (787)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~-~--~li~~~~~~g~~~~a~~~--~-~~m~~~~~--p~~~~~~~li~~~ 481 (787)
.+...|+.++|..++++...... .+..... + .++.-+...|....+.++ . ........ ...........++
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~ 274 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALAL 274 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 77788888888888877754321 1222111 1 333333344433333222 1 11111111 1112223466777
Q ss_pred HhcCCHHHHHHHHHHhhhCC-------CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 482 KNAGNIEKAEEIFNHMHSDQ-------TIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 482 ~~~g~~~~A~~l~~~m~~~~-------~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
...|+.++|..+++.+.... .....+.......-++...|++++|.+.+.+...
T Consensus 275 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 275 AGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred hcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 78899999999998886632 0001122223333456689999999999988875
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.71 E-value=0.00018 Score=77.14 Aligned_cols=362 Identities=12% Similarity=0.119 Sum_probs=189.6
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g 232 (787)
.+...|+-++|....+.-.+.. .-+.+.|..+.-.+-...++++|++.|......+-. |...|.-+----+ +.|
T Consensus 50 ~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~---QmR 123 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQI---QMR 123 (700)
T ss_pred hhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHH---HHH
Confidence 4456677777777776666654 234455665555555566777777777776654321 3444443322222 446
Q ss_pred CHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcC-CccCHHHHHHHH----HHhh
Q 003913 233 CLDEACSIYNRMIQLGGYQPRP-SLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG-LEIQKDIYSGLI----WLHS 306 (787)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li----~~~~ 306 (787)
+++-....-.+..+. .|.. ..|....-+.--. |+...|..+.++..+.. -.|+...+.... ....
T Consensus 124 d~~~~~~tr~~LLql---~~~~ra~w~~~Avs~~L~------g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i 194 (700)
T KOG1156|consen 124 DYEGYLETRNQLLQL---RPSQRASWIGFAVAQHLL------GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQI 194 (700)
T ss_pred hhhhHHHHHHHHHHh---hhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 666666666665552 3332 2233222222222 57778888877776554 234555544322 2333
Q ss_pred hccCCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHHcCChH
Q 003913 307 YQDNIDKERISLLKKEMQQAGFEEGKEVL-LSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVY-KMEAYAKIGEFM 384 (787)
Q Consensus 307 ~~~~g~~~~a~~l~~~m~~~g~~p~~~t~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-li~~~~~~g~~~ 384 (787)
....|..+.|++.+..-... ..|...+ ..-...+.+.+++++|..++..++.++ ||...|.- +..++.+--+.-
T Consensus 195 ~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~ 270 (700)
T KOG1156|consen 195 LIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDML 270 (700)
T ss_pred HHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhH
Confidence 45666666666665543321 1233332 344556667888888888888888776 45444443 444444333333
Q ss_pred HHH-HHHHHH----------------------------------HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003913 385 KSL-EIFREM----------------------------------QERLGSASVPAYHKIIELLCKAEETELTESLMKEFV 429 (787)
Q Consensus 385 ~A~-~~~~~m----------------------------------~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~ 429 (787)
+++ .+|... .++|+++ ++..+..-|-.-...+-..++.-.+.
T Consensus 271 ~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~ 347 (700)
T KOG1156|consen 271 EALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQ 347 (700)
T ss_pred HHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHH
Confidence 333 334333 3333332 12222222211111111111111111
Q ss_pred H--cCC------------CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003913 430 E--TGM------------KPLM--PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEI 493 (787)
Q Consensus 430 ~--~g~------------~p~~--~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 493 (787)
. .|- +|.. -|+-.++..|-+.|+++.|....+..+..++.-+.-|..=.+.+...|.+++|..+
T Consensus 348 ~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~ 427 (700)
T KOG1156|consen 348 HSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAW 427 (700)
T ss_pred hhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHH
Confidence 1 011 2332 23445566667777777777777776665554455566666667777777777777
Q ss_pred HHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 003913 494 FNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKY 538 (787)
Q Consensus 494 ~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 538 (787)
+++..+.+ .||...=..-..-..++.+.++|.++.....+.|.
T Consensus 428 l~ea~elD--~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 428 LDEAQELD--TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHhcc--chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 77777665 34544433444555566777777777777766664
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.7e-05 Score=74.27 Aligned_cols=198 Identities=17% Similarity=0.101 Sum_probs=157.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003913 334 VLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLC 413 (787)
Q Consensus 334 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 413 (787)
+..-|.-.|...|+...|.+-+++.++..+. +..+|..+...|-+.|..+.|.+.|++..+.... +-...|.-..-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 3445666788889999999999888888754 6778888888888999999999999888765322 4556677777788
Q ss_pred hcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003913 414 KAEETELTESLMKEFVETGMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEE 492 (787)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 492 (787)
..|++++|...|++....-.-+ -..||..+.-+..+.|+.+.|...|+..++..+-...+.-.+.....+.|++-.|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 8889999999998888743222 246888888888889999999999998888666667777888888888999999999
Q ss_pred HHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 493 IFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 493 l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.++.....+ .++..+.-..|..-.+.|+.+.|-++=..+.+
T Consensus 195 ~~~~~~~~~--~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRG--GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhcc--cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999888886 47888888888888888988887777666654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.64 E-value=3e-08 Score=64.33 Aligned_cols=34 Identities=32% Similarity=0.579 Sum_probs=25.5
Q ss_pred CCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHH
Q 003913 209 QGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMI 245 (787)
Q Consensus 209 ~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~ 245 (787)
+|+.||.+|||+||.+|| +.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~C---k~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYC---KAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHH---HCCCHHHHHHHHHhCc
Confidence 367777777777777777 6777777777777773
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00016 Score=77.56 Aligned_cols=308 Identities=9% Similarity=0.013 Sum_probs=181.4
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHCCC-CCCHhHHHHH-HHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHH-H
Q 003913 180 FALATKLADYMGKERKFAKCRDIFDDIINQGR-VPSEMTFHIL-IVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPS-L 256 (787)
Q Consensus 180 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~-~pd~~ty~~l-i~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t 256 (787)
...|..+...+...|+.+.|.+.+....+... .++...-..+ ...+. ..|++++|.+++++..+. .|+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~---~~g~~~~A~~~~~~~l~~---~P~~~~a 79 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAW---IAGDLPKALALLEQLLDD---YPRDLLA 79 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHH---CCCcHHH
Confidence 44566666667677888887777666554321 1222222221 11222 579999999999998874 34433 3
Q ss_pred HHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003913 257 HNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLL 336 (787)
Q Consensus 257 ~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~ 336 (787)
+.. ...+... +.. .+....+.+.+.. .....| ...+...+....+...|++++|...+++..+.. +.+...+.
T Consensus 80 ~~~-~~~~~~~-~~~-~~~~~~~~~~l~~--~~~~~~-~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~ 152 (355)
T cd05804 80 LKL-HLGAFGL-GDF-SGMRDHVARVLPL--WAPENP-DYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVH 152 (355)
T ss_pred HHH-hHHHHHh-ccc-ccCchhHHHHHhc--cCcCCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHH
Confidence 332 1111111 000 0345555555544 112222 233344444577888999999999999998853 33456778
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCC-CC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHH-H--HHH
Q 003913 337 SVLRVCAKEGDVEDAEKTWLRLLESDNG-IP--TPAFVYKMEAYAKIGEFMKSLEIFREMQERLG-SASVPAY-H--KII 409 (787)
Q Consensus 337 ~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~-~--~li 409 (787)
.+..++...|++++|...+++....... ++ ...|..+...+...|++++|..+|++...... .+..... + .++
T Consensus 153 ~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l 232 (355)
T cd05804 153 AVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLL 232 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHH
Confidence 8889999999999999999988876432 22 23456788899999999999999999864322 1222211 1 233
Q ss_pred HHHHhcCChHHHHHH--HHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---------CHHHHHH
Q 003913 410 ELLCKAEETELTESL--MKEFVETGM--KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP---------NRTIYGI 476 (787)
Q Consensus 410 ~~~~~~g~~~~A~~l--~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p---------~~~~~~~ 476 (787)
.-+...|....+.+. +........ ............++...|+.+.|..++..+...... .+...-.
T Consensus 233 ~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l 312 (355)
T cd05804 233 WRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLA 312 (355)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHH
Confidence 333344433333332 111111111 111222235677788889999999999998762211 1222223
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 477 YLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
..-++...|+.++|.+++......
T Consensus 313 ~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 313 EALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334456789999999999887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.6e-08 Score=62.74 Aligned_cols=32 Identities=28% Similarity=0.673 Sum_probs=17.4
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 003913 466 KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHM 497 (787)
Q Consensus 466 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 497 (787)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34555555555555555555555555555555
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00074 Score=71.79 Aligned_cols=87 Identities=13% Similarity=0.075 Sum_probs=50.2
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhcC
Q 003913 150 LAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEM-TFHILIVAYLSA 228 (787)
Q Consensus 150 ~~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~-ty~~li~~~~~~ 228 (787)
-++++.+.+.+++|+.+.+.-... ...+++.+.. .-+..+.++.++|+..++ |..++.. +...--..+.
T Consensus 52 KvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEK-AYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlY-- 121 (652)
T KOG2376|consen 52 KVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEK-AYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLY-- 121 (652)
T ss_pred hHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHH-HHHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHH--
Confidence 334777888888888554432211 0112221222 122347888888888887 3333332 4444444455
Q ss_pred CcCCCHHHHHHHHHHHHHh
Q 003913 229 PVQGCLDEACSIYNRMIQL 247 (787)
Q Consensus 229 ~~~g~~~~A~~l~~~m~~~ 247 (787)
|.|++++|+.+|+.+.+.
T Consensus 122 -rl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 122 -RLERYDEALDIYQHLAKN 139 (652)
T ss_pred -HHhhHHHHHHHHHHHHhc
Confidence 788899999999888764
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.4e-05 Score=82.84 Aligned_cols=285 Identities=14% Similarity=0.139 Sum_probs=177.9
Q ss_pred hhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 003913 305 HSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFM 384 (787)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 384 (787)
.+..+..+|.+|+.+++.++.... -..-|..+...|+..|+++.|+++|-+. ..++--|.+|.+.|+++
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 344456678888888887776432 2234667778888999999999888542 24556788999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003913 385 KSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL 464 (787)
Q Consensus 385 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 464 (787)
.|.++-++.. |....+..|-+-..-+-.+|++.+|.+++-.+. .|+ ..|.+|-+.|..++.+++..+-.
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhC
Confidence 9988866553 334456677777777888888888888775443 343 34678888888888877776542
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHH
Q 003913 465 EKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAW 544 (787)
Q Consensus 465 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~ 544 (787)
- ..-..|.-.+..-|-..|++..|++-|-+.. -|.+-++.|...+.|++|.++-+.- -| -+..
T Consensus 878 ~--d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriakte--gg--~n~~- 940 (1636)
T KOG3616|consen 878 G--DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTE--GG--ANAE- 940 (1636)
T ss_pred h--hhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhcc--cc--ccHH-
Confidence 1 1112455666777888888888888775442 3556677788888888887765431 11 1111
Q ss_pred HHHHHH--HHhhccc-ccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEEEEEccCCcccHHHHHHHHHHchhh
Q 003913 545 MEKLDY--VLSLNRK-EVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHEW 621 (787)
Q Consensus 545 ~~~l~~--~~~l~~~-~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 621 (787)
++... +-+++.+ .++ . +. ..-....-+...+..+.++.|..+.++.....-+..++-++..+...|++
T Consensus 941 -k~v~flwaksiggdaavk-l----ln---k~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~ 1011 (1636)
T KOG3616|consen 941 -KHVAFLWAKSIGGDAAVK-L----LN---KHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKF 1011 (1636)
T ss_pred -HHHHHHHHHhhCcHHHHH-H----HH---hhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccch
Confidence 11111 1111110 000 0 00 01112222233344455555555555555556677788888888999999
Q ss_pred cCCCccccCCCCCcce
Q 003913 622 LHPSFKVSDGNDDIPY 637 (787)
Q Consensus 622 ~~A~~~~~~~~~~~p~ 637 (787)
++|...+-++.+...+
T Consensus 1012 edaskhyveaiklnty 1027 (1636)
T KOG3616|consen 1012 EDASKHYVEAIKLNTY 1027 (1636)
T ss_pred hhhhHhhHHHhhcccc
Confidence 9998877666655544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-05 Score=75.21 Aligned_cols=170 Identities=12% Similarity=0.046 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003913 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL 448 (787)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 448 (787)
+..-|.-+|...|+...|..-+++.++.... +..+|..+...|.+.|+.+.|.+-|++.+... +-+..+.|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 4455788999999999999999999987322 56689999999999999999999999999853 335788999999999
Q ss_pred hcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 003913 449 NLGMHDRLHLAFSECLE--KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKA 526 (787)
Q Consensus 449 ~~g~~~~a~~~~~~m~~--~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A 526 (787)
..|++++|...|+.... ...--..+|..+.-+..+.|+.+.|.+.|++..+.. +-...+...+.....+.|++-.|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccchHH
Confidence 99999999999999886 334446789999999999999999999999999985 55677888999999999999999
Q ss_pred HHHHHHHHHcCCccCHH
Q 003913 527 EKIYDLMCLKKYEIESA 543 (787)
Q Consensus 527 ~~~~~~m~~~g~~~~p~ 543 (787)
..+++.....+- .+.+
T Consensus 193 r~~~~~~~~~~~-~~A~ 208 (250)
T COG3063 193 RLYLERYQQRGG-AQAE 208 (250)
T ss_pred HHHHHHHHhccc-ccHH
Confidence 999999987553 4444
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.2e-05 Score=72.32 Aligned_cols=154 Identities=14% Similarity=0.073 Sum_probs=73.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-------------CH------
Q 003913 342 CAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSA-------------SV------ 402 (787)
Q Consensus 342 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-------------~~------ 402 (787)
..+.|+.++|.+-|....+.+--.....||.-+ +..+.|+.+.|++...++.++|++- |+
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt 232 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT 232 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch
Confidence 345566666666555555442222344454322 3334455566666666655554421 11
Q ss_pred ---------HHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 003913 403 ---------PAYHKIIELLCKAEETELTESLMKEFVE-TGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRT 472 (787)
Q Consensus 403 ---------~t~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~ 472 (787)
..+|.-...+.+.|+.+.|.+.+-.|-- ..-..|++|...+.-.=. .+++.+..+-+.-++...+-...
T Consensus 233 ~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~E 311 (459)
T KOG4340|consen 233 LVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPE 311 (459)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChH
Confidence 1122222233455666666665555532 112334555544432211 12333333434444443334456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHh
Q 003913 473 IYGIYLESLKNAGNIEKAEEIFNHM 497 (787)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m 497 (787)
||..++-.||+..-++.|-.++.+-
T Consensus 312 TFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 6666666677766666666666543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.5e-05 Score=79.50 Aligned_cols=441 Identities=12% Similarity=0.048 Sum_probs=225.6
Q ss_pred HHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHH
Q 003913 218 FHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDI 297 (787)
Q Consensus 218 y~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 297 (787)
|..++..|- .+++.+.+++.+.+....+-.++....--+.- +.. |+-++|....+.-+..++.. .+.
T Consensus 11 F~~~lk~yE----~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L--~~l------g~~~ea~~~vr~glr~d~~S-~vC 77 (700)
T KOG1156|consen 11 FRRALKCYE----TKQYKKGLKLIKQILKKFPEHGESLAMKGLTL--NCL------GKKEEAYELVRLGLRNDLKS-HVC 77 (700)
T ss_pred HHHHHHHHH----HHHHHhHHHHHHHHHHhCCccchhHHhccchh--hcc------cchHHHHHHHHHHhccCccc-chh
Confidence 444455553 56666666666666654333333332221111 111 45666666666555544431 122
Q ss_pred HHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003913 298 YSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG-KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEA 376 (787)
Q Consensus 298 ~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 376 (787)
+..+ +-.+....++++|.+.|+..... .|| ...+.-+--.=++.|+++.......+..+..+. ....|.....+
T Consensus 78 wHv~--gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs 152 (700)
T KOG1156|consen 78 WHVL--GLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVA 152 (700)
T ss_pred HHHH--HHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHH
Confidence 2222 23344455566666666666553 333 344544444445666777666666666665432 34566777777
Q ss_pred HHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHH------HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003913 377 YAKIGEFMKSLEIFREMQERL-GSASVPAYHKII------ELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLN 449 (787)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li------~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 449 (787)
+.-.|+...|..+.++..+.. ..|+...|.... ......|..++|.+.+..-... +.-....-..-...+.+
T Consensus 153 ~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~k 231 (700)
T KOG1156|consen 153 QHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMK 231 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHH
Confidence 777777777777777766543 234544443332 2344556666666555443321 11111122333455667
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHhhhCCCCCCCHHHHHHH-HHHHHcCCCHHHHH
Q 003913 450 LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAE-EIFNHMHSDQTIGVNTRSCNII-LSAYLSSGDFVKAE 527 (787)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~~~~~p~~~t~~~l-i~~~~~~g~~~~A~ 527 (787)
.+++++|..+|..++...+-|...|-.+..++.+--+.-++. .+|....+.- |-...-.-+ ++......-.+..-
T Consensus 232 l~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y---~r~e~p~Rlplsvl~~eel~~~vd 308 (700)
T KOG1156|consen 232 LGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY---PRHECPRRLPLSVLNGEELKEIVD 308 (700)
T ss_pred HhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC---cccccchhccHHHhCcchhHHHHH
Confidence 777777777777777655555555555555555333333333 5555544431 111110000 11111122233344
Q ss_pred HHHHHHHHcCCccCHH-------------HHHHHHHHHh--hcccccc--cccccCCchHHHHHHHH--HHhhhhhhccc
Q 003913 528 KIYDLMCLKKYEIESA-------------WMEKLDYVLS--LNRKEVK--KPVSLNLSSEQRENLIG--LLLGGLCIESD 588 (787)
Q Consensus 528 ~~~~~m~~~g~~~~p~-------------~~~~l~~~~~--l~~~~~~--~~~~~~l~~~~~~~~~~--~ll~~~~~~~~ 588 (787)
+++..+.++|++.--. .++.+...+. +...... ......-+| ...+|. -+...+-..|+
T Consensus 309 kyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~P--ttllWt~y~laqh~D~~g~ 386 (700)
T KOG1156|consen 309 KYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPP--TTLLWTLYFLAQHYDKLGD 386 (700)
T ss_pred HHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCc--hHHHHHHHHHHHHHHHccc
Confidence 5555556565432111 1122111111 1111000 000111122 244444 45556777899
Q ss_pred hhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccccCCCCCcceEEeeec-cchHHHHHHhhccCcccccccc
Q 003913 589 EKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPYKYSTIS-HPYFCFYADKFWPKGRLVIPKL 665 (787)
Q Consensus 589 ~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~~~~t~~-~~~~~~~~~g~~~~a~~~~~~m 665 (787)
++.|...+. +...|.-+..|..-+.|+.-.|.+++|...+.++.+.+.- -..++ ..+--.+.....++|.++..+.
T Consensus 387 ~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a-DR~INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 387 YEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA-DRAINSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch-hHHHHHHHHHHHHHccccHHHHHHHHHh
Confidence 999999888 7777888888989999999999999999998777666522 12233 2223345556667777665444
Q ss_pred hhhcC---C--hhHHHHHhhcCC
Q 003913 666 IHRWL---T--PRALAYWFMYGG 683 (787)
Q Consensus 666 i~~gl---~--P~~lay~~m~~g 683 (787)
-..|. . -+..+.|++..-
T Consensus 466 Tr~~~~~~~~L~~mqcmWf~~E~ 488 (700)
T KOG1156|consen 466 TREGFGAVNNLAEMQCMWFQLED 488 (700)
T ss_pred hhcccchhhhHHHhhhHHHhHhh
Confidence 43332 1 234556665543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.52 E-value=3e-06 Score=86.38 Aligned_cols=244 Identities=14% Similarity=0.131 Sum_probs=157.1
Q ss_pred hhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003913 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEK 353 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 353 (787)
|++..+..-.+ .. ...+....-.-.....++...|+.+.+ ..++.... .|.......+...+....+-+.+..
T Consensus 15 G~Y~~~i~e~~-~~--~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 15 GNYQQCINEAS-LK--SFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp T-HHHHCHHHH-CH--TSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred hhHHHHHHHhh-cc--CCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchHHHHH
Confidence 56666664444 21 222222232233333566666665543 34443333 6666665555444443344455555
Q ss_pred HHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003913 354 TWLRLLESDNG-IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETG 432 (787)
Q Consensus 354 ~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 432 (787)
-+++....... .+..........|...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~- 160 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI- 160 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Confidence 44444333322 22333333445677789999999988753 36777778899999999999999999999874
Q ss_pred CCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHH
Q 003913 433 MKPLMPSYINLTNMYL----NLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTR 508 (787)
Q Consensus 433 ~~p~~~t~~~li~~~~----~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~ 508 (787)
..| .+...|..++. ....+.+|..+|+++.+.+.+++.+.|.+..++...|++++|.+++++....+ +-+..
T Consensus 161 -~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--~~~~d 236 (290)
T PF04733_consen 161 -DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--PNDPD 236 (290)
T ss_dssp -SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHH
T ss_pred -CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cCCHH
Confidence 334 33444444443 33469999999999988888999999999999999999999999999988875 45677
Q ss_pred HHHHHHHHHHcCCCH-HHHHHHHHHHHH
Q 003913 509 SCNIILSAYLSSGDF-VKAEKIYDLMCL 535 (787)
Q Consensus 509 t~~~li~~~~~~g~~-~~A~~~~~~m~~ 535 (787)
+...++......|+. +.+.+++.++..
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 888888888888888 778888888886
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00059 Score=83.17 Aligned_cols=339 Identities=9% Similarity=-0.049 Sum_probs=208.7
Q ss_pred HHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCC-C----CCCHH-HHHHHHH
Q 003913 189 YMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGG-Y----QPRPS-LHNSLFR 262 (787)
Q Consensus 189 ~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g-~----~pd~~-t~~~ll~ 262 (787)
.+...|++..+..+++.++......+..........+. ..|++++|..++........ . .|... ....++.
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~---~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a 459 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ---SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRA 459 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH---HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHH
Confidence 34456777777777776632211112222222223333 57999999999988765310 0 11111 1122222
Q ss_pred HHHcCCCCCChhhHHHHHHHHHHHHHcCCccCH--HHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCC---CC--CHHHH
Q 003913 263 ALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQK--DIYSGLIWLHSYQDNIDKERISLLKKEMQQAGF---EE--GKEVL 335 (787)
Q Consensus 263 ~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~---~p--~~~t~ 335 (787)
...... |++++|...+++....-...+. ...........+...|++++|...+.+.....- .+ -..++
T Consensus 460 ~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~ 534 (903)
T PRK04841 460 QVAIND-----GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSL 534 (903)
T ss_pred HHHHhC-----CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence 222222 6999999999988764222222 112223334667789999999999988764311 11 12345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCC--CHHH
Q 003913 336 LSVLRVCAKEGDVEDAEKTWLRLLES----DNG--I-PTPAFVYKMEAYAKIGEFMKSLEIFREMQER--LGSA--SVPA 404 (787)
Q Consensus 336 ~~li~~~~~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p--~~~t 404 (787)
..+...+...|++++|...+++.... +.. + ....+..+...+...|++++|...+++.... ...+ ....
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 56677788999999999998876653 211 1 1233455666778889999999999887542 1112 2334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHH--H--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH----HHH
Q 003913 405 YHKIIELLCKAEETELTESLMKEFVETG--MKPLMP--S--YINLTNMYLNLGMHDRLHLAFSECLEKCRPNR----TIY 474 (787)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~--t--~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~----~~~ 474 (787)
+..+...+...|+.++|...+....... ...... . ....+..+...|+.+.|..++........... ..+
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 5556678889999999999998886521 111111 1 11123445668999999999877654111111 124
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 003913 475 GIYLESLKNAGNIEKAEEIFNHMHSD----QTIGV-NTRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 475 ~~li~~~~~~g~~~~A~~l~~~m~~~----~~~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (787)
..+..++...|+.++|...+++.... | ..+ ...+...+..++.+.|+.++|...+.+..+.
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g-~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLR-LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56777888999999999999987653 2 112 2346777778899999999999999999863
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00019 Score=74.33 Aligned_cols=240 Identities=12% Similarity=0.006 Sum_probs=172.9
Q ss_pred hhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcC-ChHHH
Q 003913 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKE-VLLSVLRVCAKEG-DVEDA 351 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~-t~~~li~~~~~~g-~~~~A 351 (787)
+.+.+|...|+.+... .+..++|+.+..++.+ +.|+.. +|+.--.++.+.| +++++
T Consensus 34 ~~~~~a~~~~ra~l~~--------------------~e~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~ee 91 (320)
T PLN02789 34 PEFREAMDYFRAVYAS--------------------DERSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEE 91 (320)
T ss_pred HHHHHHHHHHHHHHHc--------------------CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHH
Confidence 3677777777766543 3456788888888776 356544 4555555556667 67999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003913 352 EKTWLRLLESDNGIPTPAFVYKMEAYAKIGEF--MKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFV 429 (787)
Q Consensus 352 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~ 429 (787)
...++++.+..++ +..+|+.....+.+.|+. ++++.+++++.+...+ |..+|+...-++...|++++|++.+++++
T Consensus 92 L~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I 169 (320)
T PLN02789 92 LDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLL 169 (320)
T ss_pred HHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999988765 566787666566666653 6788899898877544 78899998889999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhc---CC----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHhh
Q 003913 430 ETGMKPLMPSYINLTNMYLNL---GM----HDRLHLAFSECLEKCRPNRTIYGIYLESLKNA----GNIEKAEEIFNHMH 498 (787)
Q Consensus 430 ~~g~~p~~~t~~~li~~~~~~---g~----~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~----g~~~~A~~l~~~m~ 498 (787)
+.+ .-|..+|+.....+.+. |. .++......+++...+-|...|+.+...|... ++..+|.+.+.+..
T Consensus 170 ~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 170 EED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred HHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 876 34566666666555554 22 24566666677776788899999999988873 44567999998887
Q ss_pred hCCCCCCCHHHHHHHHHHHHcCC------------------CHHHHHHHHHHHHHcCCccCHHH
Q 003913 499 SDQTIGVNTRSCNIILSAYLSSG------------------DFVKAEKIYDLMCLKKYEIESAW 544 (787)
Q Consensus 499 ~~~~~~p~~~t~~~li~~~~~~g------------------~~~~A~~~~~~m~~~g~~~~p~~ 544 (787)
..+ +.+......|++.|+... ..++|.++++.+.+ .||-.
T Consensus 249 ~~~--~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~----~d~ir 306 (320)
T PLN02789 249 SKD--SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEV----ADPMR 306 (320)
T ss_pred ccc--CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHh----hCcHH
Confidence 764 457788888899888632 24678888887742 55543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00053 Score=72.22 Aligned_cols=369 Identities=13% Similarity=0.089 Sum_probs=230.8
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhcCCcC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPS-EMTFHILIVAYLSAPVQ 231 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd-~~ty~~li~~~~~~~~~ 231 (787)
+....|+++.|...|-..+.-. ++|.+.|+.-..+|++.|++++|++=-.+-++. .|+ .-.|+-.-.++. -.
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~---~l 83 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALF---GL 83 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHH---hc
Confidence 3447899999999999999886 679999999999999999999998876666654 455 357888888888 68
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHH----cCCccCHHHHHHHHH---
Q 003913 232 GCLDEACSIYNRMIQLGGYQPRP-SLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLT----SGLEIQKDIYSGLIW--- 303 (787)
Q Consensus 232 g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~~~li~--- 303 (787)
|++++|+.-|.+=.+. .|+. ..++-+..+...... .++.-..-.++..+.. ....-+ ..|..++.
T Consensus 84 g~~~eA~~ay~~GL~~---d~~n~~L~~gl~~a~~~~~~---~~~~~~~p~~~~~l~~~p~t~~~~~~-~~~~~~l~~~~ 156 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEK---DPSNKQLKTGLAQAYLEDYA---ADQLFTKPYFHEKLANLPLTNYSLSD-PAYVKILEIIQ 156 (539)
T ss_pred ccHHHHHHHHHHHhhc---CCchHHHHHhHHHhhhHHHH---hhhhccCcHHHHHhhcChhhhhhhcc-HHHHHHHHHhh
Confidence 9999999999998863 4543 444444444311000 0000000001111100 000000 11111110
Q ss_pred -----HhhhccCCCHHHHHHHHH-----HHHHcC-------CCC------------C----------HHHHHHHHHHHHh
Q 003913 304 -----LHSYQDNIDKERISLLKK-----EMQQAG-------FEE------------G----------KEVLLSVLRVCAK 344 (787)
Q Consensus 304 -----~~~~~~~g~~~~a~~l~~-----~m~~~g-------~~p------------~----------~~t~~~li~~~~~ 344 (787)
+..+.+......+...+. .+...| ..| | ..-..-+.++.-+
T Consensus 157 ~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaayk 236 (539)
T KOG0548|consen 157 KNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYK 236 (539)
T ss_pred cCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHH
Confidence 011111111111111110 000011 111 1 1123456667777
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHHhcCC
Q 003913 345 EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYH-------KIIELLCKAEE 417 (787)
Q Consensus 345 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-------~li~~~~~~g~ 417 (787)
..+++.|.+-+....+.. -+..-++....+|...|++.++...-+.-.+.|-. ...-|+ .+..+|.+.++
T Consensus 237 kk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~ 313 (539)
T KOG0548|consen 237 KKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKRED 313 (539)
T ss_pred hhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHh
Confidence 888888888888877765 25555666777888888877777666665554322 122222 23346666778
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHH-------------------------HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 003913 418 TELTESLMKEFVETGMKPLMPSYI-------------------------NLTNMYLNLGMHDRLHLAFSECLEKCRPNRT 472 (787)
Q Consensus 418 ~~~A~~l~~~m~~~g~~p~~~t~~-------------------------~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~ 472 (787)
++.|...|.+.+.....|+..+-. .=.+.+.+.|++..|...|.++++..+-|..
T Consensus 314 ~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 314 YEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 888888888877655455432211 1145677888999999999998887788888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHH
Q 003913 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAW 544 (787)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~ 544 (787)
.|....-+|.+.|.+..|++-.+..++.. ++....|.-=..++....+|++|++.|++-++ .+|+.
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~--p~~~kgy~RKg~al~~mk~ydkAleay~eale----~dp~~ 459 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELD--PNFIKAYLRKGAALRAMKEYDKALEAYQEALE----LDPSN 459 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCchh
Confidence 99999999999999999999888888875 45556666666666677788888888888776 66764
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00095 Score=66.34 Aligned_cols=349 Identities=11% Similarity=0.037 Sum_probs=176.2
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g 232 (787)
+.-+.|++++|+.++..+.... .++...+-.|...+.-.|.+.+|..+-...+ +....+-|+--++. +.+
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~------k~pL~~RLlfhlah--kln 135 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAP------KTPLCIRLLFHLAH--KLN 135 (557)
T ss_pred HHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCC------CChHHHHHHHHHHH--HhC
Confidence 4457899999999999888765 5566666667666667788888887766543 33444444444443 667
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCC
Q 003913 233 CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNID 312 (787)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~ 312 (787)
+-++-..+-..+... .-|..+..++ -|.+. ++.+|.+++...+..+.. -...+.. ++.+|.+..-
T Consensus 136 dEk~~~~fh~~LqD~---~EdqLSLAsv--hYmR~-------HYQeAIdvYkrvL~dn~e--y~alNVy-~ALCyyKlDY 200 (557)
T KOG3785|consen 136 DEKRILTFHSSLQDT---LEDQLSLASV--HYMRM-------HYQEAIDVYKRVLQDNPE--YIALNVY-MALCYYKLDY 200 (557)
T ss_pred cHHHHHHHHHHHhhh---HHHHHhHHHH--HHHHH-------HHHHHHHHHHHHHhcChh--hhhhHHH-HHHHHHhcch
Confidence 766666655555431 1222221111 13332 788888888887655422 1111111 1234455555
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh--cCChHHHHH------------HHHHHHhCCC------------CC
Q 003913 313 KERISLLKKEMQQAGFEEG-KEVLLSVLRVCAK--EGDVEDAEK------------TWLRLLESDN------------GI 365 (787)
Q Consensus 313 ~~~a~~l~~~m~~~g~~p~-~~t~~~li~~~~~--~g~~~~A~~------------~~~~m~~~~~------------~~ 365 (787)
++-+.++++--.+. -|| ....|.......+ .|+..+++. ..+.+.+.++ -|
T Consensus 201 ydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP 278 (557)
T KOG3785|consen 201 YDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLP 278 (557)
T ss_pred hhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhch
Confidence 55555665554442 233 2333333322222 222222111 1111111110 00
Q ss_pred -----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH-----HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003913 366 -----PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPA-----YHKIIELLCKAEETELTESLMKEFVETGMKP 435 (787)
Q Consensus 366 -----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 435 (787)
-+.+--.|+--|.+.+++++|..+.+++.-. .|-... +.++..-......+.-|.+.|+..-.++..-
T Consensus 279 ~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ec 356 (557)
T KOG3785|consen 279 SLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALEC 356 (557)
T ss_pred HHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccc
Confidence 0011122444566777777777766554311 111111 1111111112223444555555544444433
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHH
Q 003913 436 LM-PSYINLTNMYLNLGMHDRLHLAFSECLEKC-RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNII 513 (787)
Q Consensus 436 ~~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~l 513 (787)
|. .---++..++.-..++++.+..+..+..-+ ..|...+ .+..+++..|++.+|+++|-.+.... + .|..+|.++
T Consensus 357 DTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~-i-kn~~~Y~s~ 433 (557)
T KOG3785|consen 357 DTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPE-I-KNKILYKSM 433 (557)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChh-h-hhhHHHHHH
Confidence 32 223344455555566677766666665522 3333333 35677777788888888877665543 3 245555554
Q ss_pred H-HHHHcCCCHHHHHHHHHHH
Q 003913 514 L-SAYLSSGDFVKAEKIYDLM 533 (787)
Q Consensus 514 i-~~~~~~g~~~~A~~~~~~m 533 (787)
+ ++|.++++++-|-.++-++
T Consensus 434 LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 434 LARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHHhcCCchHHHHHHHhc
Confidence 4 5677777777776655544
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00015 Score=83.81 Aligned_cols=223 Identities=13% Similarity=0.166 Sum_probs=152.2
Q ss_pred HHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 003913 297 IYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEE-----GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFV 371 (787)
Q Consensus 297 ~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p-----~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 371 (787)
...|+-.|......++.++|.+++++.... +.+ -...|.++++.-..-|.-+...++|+++.+.. . .-.+|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V~~ 1534 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTVHL 1534 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHHHH
Confidence 344444445666777788888888777653 222 12356666666666777777788888877653 1 245677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHH
Q 003913 372 YKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL---MPSYINLTNMYL 448 (787)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~li~~~~ 448 (787)
.|...|.+.++.++|-++|+.|.++ ..-....|...+..+.+..+-+.|..++.+.++. -|- .....-.+..-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 7888888888888888888888765 3335667888888888888888888888887763 332 334445556666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH--HHHHHHHHHHHcCCCHHHH
Q 003913 449 NLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT--RSCNIILSAYLSSGDFVKA 526 (787)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~--~t~~~li~~~~~~g~~~~A 526 (787)
+.|+.+.++.+|+..+...+.-...|+.+|++=.++|+.+.+..+|++....+ ++|-. ..|...+.-=..+|+-+.+
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~-l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK-LSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC-CChhHhHHHHHHHHHHHHhcCchhhH
Confidence 77888888888888877666677788888888888888888888888888877 54432 3444444444445554433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0036 Score=66.01 Aligned_cols=78 Identities=14% Similarity=0.251 Sum_probs=47.7
Q ss_pred ccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHH
Q 003913 177 RFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVP-SEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPS 255 (787)
Q Consensus 177 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p-d~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~ 255 (787)
+.|+.+|+.||.-+... .++++++.++++... .| ....|..-|.+-. +..+++.++.+|.+.... .-+..
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El---~skdfe~VEkLF~RCLvk---vLnlD 87 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIEREL---ASKDFESVEKLFSRCLVK---VLNLD 87 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHH---HhhhHHHHHHHHHHHHHH---HhhHh
Confidence 45677777777765444 777777777777653 23 3355666677666 567777777777776653 23344
Q ss_pred HHHHHHHH
Q 003913 256 LHNSLFRA 263 (787)
Q Consensus 256 t~~~ll~~ 263 (787)
.|..-|.-
T Consensus 88 LW~lYl~Y 95 (656)
T KOG1914|consen 88 LWKLYLSY 95 (656)
T ss_pred HHHHHHHH
Confidence 44444443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0031 Score=67.28 Aligned_cols=351 Identities=13% Similarity=0.098 Sum_probs=215.0
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g 232 (787)
+.-+.+..++|+..+.-.- +.+..+...-...+.|.|++++|.++|+.+.+.+. ..+...+.+-+. ..
T Consensus 88 c~Yrlnk~Dealk~~~~~~-----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~----dd~d~~~r~nl~--a~- 155 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLD-----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS----DDQDEERRANLL--AV- 155 (652)
T ss_pred HHHHcccHHHHHHHHhccc-----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC----chHHHHHHHHHH--HH-
Confidence 3448899999999888222 22444566666778899999999999999988743 344444433331 01
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCC-------------ccCHHHHH
Q 003913 233 CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGL-------------EIQKDIYS 299 (787)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~-------------~p~~~~~~ 299 (787)
..+... ..|... ...| ..+|..+.+..|...+ .|++.+|+++++...+.+. .-..++.
T Consensus 156 --~a~l~~-~~~q~v-~~v~-e~syel~yN~Ac~~i~---~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~I- 226 (652)
T KOG2376|consen 156 --AAALQV-QLLQSV-PEVP-EDSYELLYNTACILIE---NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPI- 226 (652)
T ss_pred --HHhhhH-HHHHhc-cCCC-cchHHHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHH-
Confidence 111111 123322 3444 3456666554443221 1799999999998833221 1111111
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCH---HH-HHHHHHHHHhcCC----------------------------
Q 003913 300 GLIWLHSYQDNIDKERISLLKKEMQQAGFEEGK---EV-LLSVLRVCAKEGD---------------------------- 347 (787)
Q Consensus 300 ~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~---~t-~~~li~~~~~~g~---------------------------- 347 (787)
.+-+.+.+...|+.++|..++....+... +|. .+ -|.|+.+ ..-.+
T Consensus 227 rvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~ 304 (652)
T KOG2376|consen 227 RVQLAYVLQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK 304 (652)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 12235788899999999999999888643 232 12 2222221 11111
Q ss_pred ------------------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003913 348 ------------------VEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK--IGEFMKSLEIFREMQERLGSASVPAYHK 407 (787)
Q Consensus 348 ------------------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 407 (787)
.+.+.++-... .+..|. ..+.+++....+ .....+|.+++...-+....-..+.--.
T Consensus 305 qk~~i~~N~~lL~l~tnk~~q~r~~~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~ 381 (652)
T KOG2376|consen 305 QKQAIYRNNALLALFTNKMDQVRELSASL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLL 381 (652)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHH
Confidence 11111111100 112232 344444443333 2357788888887766532223456667
Q ss_pred HHHHHHhcCChHHHHHHHH--------HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCCHHH---
Q 003913 408 IIELLCKAEETELTESLMK--------EFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE---KCRPNRTI--- 473 (787)
Q Consensus 408 li~~~~~~g~~~~A~~l~~--------~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~p~~~~--- 473 (787)
++......|+++.|.+++. .+.+.+..| .+...+...|.+.+.-+.|..++.+... ...+....
T Consensus 382 ~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~ 459 (652)
T KOG2376|consen 382 RAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLS 459 (652)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHh
Confidence 7888999999999999999 666655555 4556677778888877777777777664 22222233
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 474 -YGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 474 -~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
+.-+...-.+.|+-++|..+++++.+.+ ++|..+...++.+|++. +.+.|+.+-..+.
T Consensus 460 ~~~~aa~f~lr~G~~~ea~s~leel~k~n--~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 460 LMREAAEFKLRHGNEEEASSLLEELVKFN--PNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHHHHhHHHHhcCchHHHHHHHHHHHHhC--CchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 3334444457899999999999999974 78999999999999986 5788888877665
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.3e-05 Score=78.78 Aligned_cols=154 Identities=18% Similarity=0.130 Sum_probs=81.4
Q ss_pred HHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-
Q 003913 301 LIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK- 379 (787)
Q Consensus 301 li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~- 379 (787)
++.+..+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+.+ .| .+...|..++..
T Consensus 106 ~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l 176 (290)
T PF04733_consen 106 LLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNL 176 (290)
T ss_dssp HHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHH
Confidence 33344555566666666655421 244555556666667777777777777766554 22 223334333332
Q ss_pred ---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HH
Q 003913 380 ---IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMH-DR 455 (787)
Q Consensus 380 ---~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~-~~ 455 (787)
..++.+|..+|+++.++ ..++..+.|.+..++...|++++|.+++.+..+.. +-+..|...++.+....|+. +.
T Consensus 177 ~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~ 254 (290)
T PF04733_consen 177 ATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEA 254 (290)
T ss_dssp HHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHH
T ss_pred HhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhH
Confidence 23566666666666544 44566666666666666666666666666655432 22345555555555555555 44
Q ss_pred HHHHHHHHHh
Q 003913 456 LHLAFSECLE 465 (787)
Q Consensus 456 a~~~~~~m~~ 465 (787)
+.+.+.++..
T Consensus 255 ~~~~l~qL~~ 264 (290)
T PF04733_consen 255 AERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHCHH
T ss_pred HHHHHHHHHH
Confidence 4445554443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0013 Score=73.80 Aligned_cols=322 Identities=13% Similarity=0.079 Sum_probs=198.1
Q ss_pred cCCcchHHHHHHHhhcCChhHHHHHHHHHHhcC-CCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHH
Q 003913 142 LRQEDGTYLAVHCMRIRENETGFRVYEWMMQQH-WYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHI 220 (787)
Q Consensus 142 ~~p~~~t~~~~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~ 220 (787)
-.|+.++.++.++...+-+.+-.++++.++-.+ .+.-+...-|.||-...| -+..+..++.+++-.... |+..
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~~ia---- 1055 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA-PDIA---- 1055 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc-hhHH----
Confidence 356777777777778888888888888776443 233444455555544434 344556666666655421 2221
Q ss_pred HHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHH
Q 003913 221 LIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSG 300 (787)
Q Consensus 221 li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 300 (787)
.... .++-+++|+.+|++. ..+....+.+|.-. +.++.|.++-++.. .+.+++.
T Consensus 1056 --~iai---~~~LyEEAF~ifkkf------~~n~~A~~VLie~i---------~~ldRA~efAe~~n------~p~vWsq 1109 (1666)
T KOG0985|consen 1056 --EIAI---ENQLYEEAFAIFKKF------DMNVSAIQVLIENI---------GSLDRAYEFAERCN------EPAVWSQ 1109 (1666)
T ss_pred --HHHh---hhhHHHHHHHHHHHh------cccHHHHHHHHHHh---------hhHHHHHHHHHhhC------ChHHHHH
Confidence 1122 356678888888754 23445555555543 35677766655543 2455666
Q ss_pred HHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 003913 301 LIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKI 380 (787)
Q Consensus 301 li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 380 (787)
+. .+..+.|...+|.+-|-+. -|...|.-++..+.+.|.+++-.+.+....++.-+|.+. +.||-+|++.
T Consensus 1110 la--kAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt 1179 (1666)
T KOG0985|consen 1110 LA--KAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKT 1179 (1666)
T ss_pred HH--HHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHh
Confidence 65 5556666667766655321 256678888888888888888888877666666555443 4678888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003913 381 GEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAF 460 (787)
Q Consensus 381 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 460 (787)
+++.+-.+++ ..||......+..-|...|.++.|.-+|...- -|..|...+...|.+..|...-
T Consensus 1180 ~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1180 NRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred chHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHh
Confidence 8877655543 23677777777777778888877776665432 3555666666666666665544
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003913 461 SECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDL 532 (787)
Q Consensus 461 ~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 532 (787)
++ ..+..||--+-.+|...+.+.-| +|...+ +-....-..-|+.-|-..|-+++-+.+++.
T Consensus 1244 RK-----Ans~ktWK~VcfaCvd~~EFrlA-----QiCGL~-iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1244 RK-----ANSTKTWKEVCFACVDKEEFRLA-----QICGLN-IIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred hh-----ccchhHHHHHHHHHhchhhhhHH-----HhcCce-EEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 43 34566777777777666555433 333333 223444556667777777777777766653
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.32 E-value=7e-05 Score=77.46 Aligned_cols=206 Identities=13% Similarity=0.014 Sum_probs=133.1
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--
Q 003913 376 AYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAE-ETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM-- 452 (787)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~-- 452 (787)
.+.+.++.++|+.+..++++.... +..+|+.--.++...| .+++++..++++.+.. +-+..+|+.....+.+.|.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 334445666666666666654211 3334554445555555 4567777777776643 2344455555555555554
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcC---CCH----HH
Q 003913 453 HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSS---GDF----VK 525 (787)
Q Consensus 453 ~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~---g~~----~~ 525 (787)
.+++..+++.+++..+.|..+|+...-.+.+.|++++|++.++++++.+ +-|...|+.....+.+. |.. ++
T Consensus 124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 124 ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhccccccccccHHH
Confidence 2567778888887778889999999999999999999999999999886 45778888777666554 222 45
Q ss_pred HHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhcc----chhhcceeEE--EE
Q 003913 526 AEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIES----DEKRKRHMIR--FQ 599 (787)
Q Consensus 526 A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~--~~ 599 (787)
++.+..+++. .+|+ +...|+-+.+.+...+ ....+...+. ..
T Consensus 202 el~y~~~aI~----~~P~----------------------------N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 202 ELKYTIDAIL----ANPR----------------------------NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHH----hCCC----------------------------CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 6666666665 4554 2566766666665532 2223333333 45
Q ss_pred EccCCcccHHHHHHHHHH
Q 003913 600 FNENSRMHSVLRRYLYDQ 617 (787)
Q Consensus 600 ~~p~~~~~~~~l~~~y~~ 617 (787)
.+|.++.+...|+++|+.
T Consensus 250 ~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 250 KDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ccCCcHHHHHHHHHHHHh
Confidence 678888888889999985
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.31 E-value=9.3e-05 Score=74.06 Aligned_cols=186 Identities=13% Similarity=-0.009 Sum_probs=123.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHH
Q 003913 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG-I-PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASV--PAYH 406 (787)
Q Consensus 331 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~ 406 (787)
....+..+...+.+.|++++|...++++.+..+. | ...++..+..+|.+.|++++|...|+++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4566777778888889999999888888776532 1 1245677788888889999999999888765321111 1344
Q ss_pred HHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 003913 407 KIIELLCKA--------EETELTESLMKEFVETGMKPLM-PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIY 477 (787)
Q Consensus 407 ~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~l 477 (787)
.+..++... |+.++|.+.++++.+. .|+. ..+..+..... .... . ......+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~------~-------~~~~~~~ 172 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNR------L-------AGKELYV 172 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHH------H-------HHHHHHH
Confidence 444555543 6677788888887764 2332 22211111100 0000 0 0112245
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 478 LESLKNAGNIEKAEEIFNHMHSDQTI-GVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~~~~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
...|.+.|++++|...+++..+...- +.....+..+..++.+.|++++|..+++.+..
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67788999999999999999886311 12357889999999999999999999998875
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0021 Score=70.69 Aligned_cols=318 Identities=13% Similarity=0.079 Sum_probs=191.4
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHC-CC--------CCCHhHHHHHHH
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQ-GR--------VPSEMTFHILIV 223 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-g~--------~pd~~ty~~li~ 223 (787)
.+...|+.+.|.+-...+.. ..+|..+..++.+..+++-|.--+-.|... |. .|+.. .+-..
T Consensus 737 fyvtiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~--eakvA 807 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED--EAKVA 807 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch--hhHHH
Confidence 34567899999887776643 468999999999999999998888777642 11 22211 12222
Q ss_pred HHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHH
Q 003913 224 AYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIW 303 (787)
Q Consensus 224 ~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 303 (787)
.++. ..|.+++|+.+|++.++.+ |++-+.+.. |++++|.++-+.--+.-+ ..||-...
T Consensus 808 vLAi--eLgMlEeA~~lYr~ckR~D-----------LlNKlyQs~-----g~w~eA~eiAE~~DRiHL---r~Tyy~yA- 865 (1416)
T KOG3617|consen 808 VLAI--ELGMLEEALILYRQCKRYD-----------LLNKLYQSQ-----GMWSEAFEIAETKDRIHL---RNTYYNYA- 865 (1416)
T ss_pred HHHH--HHhhHHHHHHHHHHHHHHH-----------HHHHHHHhc-----ccHHHHHHHHhhccceeh---hhhHHHHH-
Confidence 2222 5799999999999988732 555566554 589999988765433222 23333322
Q ss_pred HhhhccCCCHHHHHHHHHHH----------HHcCC---------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 003913 304 LHSYQDNIDKERISLLKKEM----------QQAGF---------EEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG 364 (787)
Q Consensus 304 ~~~~~~~g~~~~a~~l~~~m----------~~~g~---------~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 364 (787)
.-+...+|.+.|++.|++. ..... .-|...|.--..-+-..|+++.|..+|....
T Consensus 866 -~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~----- 939 (1416)
T KOG3617|consen 866 -KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK----- 939 (1416)
T ss_pred -HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----
Confidence 3344556777777777632 21110 1122222222222335677777777776543
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003913 365 IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLT 444 (787)
Q Consensus 365 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 444 (787)
-|-+++...|-.|+.++|-++-++-. |....-.|.+.|-..|++.+|...|.+.+. +...|
T Consensus 940 ----D~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAI 1000 (1416)
T KOG3617|consen 940 ----DYFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAI 1000 (1416)
T ss_pred ----hhhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHH
Confidence 35567788888888888887766432 556666788888888888888888877653 33333
Q ss_pred HHHHhcC---------------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------hhhCC
Q 003913 445 NMYLNLG---------------MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNH--------MHSDQ 501 (787)
Q Consensus 445 ~~~~~~g---------------~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~--------m~~~~ 501 (787)
+.|-..+ +.-.|-+.|++.- .-..-.+..|-++|.+.+|+++--+ ++.++
T Consensus 1001 RlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g-------~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~D 1073 (1416)
T KOG3617|consen 1001 RLCKENDMKDRLANLALMSGGSDLVSAARYYEELG-------GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKD 1073 (1416)
T ss_pred HHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc-------hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHh
Confidence 3322222 2223333443321 0112335567778888777765211 11111
Q ss_pred CC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 502 TI--GVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 502 ~~--~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
+ ..|+...+.-.+-++.+.++++|..++-...
T Consensus 1074 -Ld~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1074 -LDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred -cCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 1 2366677777777888888888888876554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00047 Score=66.89 Aligned_cols=333 Identities=11% Similarity=0.033 Sum_probs=215.8
Q ss_pred cCCcchHHHHHHHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 003913 142 LRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHIL 221 (787)
Q Consensus 142 ~~p~~~t~~~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~l 221 (787)
++..++|-++..+.+-.+++.|.+++..-.++. +.+....+.|..+|-...++..|-..++++-.. .|...-|..-
T Consensus 8 i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY 83 (459)
T KOG4340|consen 8 IPEGEFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLY 83 (459)
T ss_pred CCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHH
Confidence 444456666666778889999999998887775 447777788888899999999999999998775 4555555432
Q ss_pred H-HHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHH
Q 003913 222 I-VAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSG 300 (787)
Q Consensus 222 i-~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 300 (787)
- ..+. +.+.+.+|+.+...|.. .|+...-..-+.+..+-.. +++..+..++++....| +.++..-
T Consensus 84 ~AQSLY---~A~i~ADALrV~~~~~D----~~~L~~~~lqLqaAIkYse----~Dl~g~rsLveQlp~en---~Ad~~in 149 (459)
T KOG4340|consen 84 QAQSLY---KACIYADALRVAFLLLD----NPALHSRVLQLQAAIKYSE----GDLPGSRSLVEQLPSEN---EADGQIN 149 (459)
T ss_pred HHHHHH---HhcccHHHHHHHHHhcC----CHHHHHHHHHHHHHHhccc----ccCcchHHHHHhccCCC---ccchhcc
Confidence 2 2233 68889999999988864 2444333333333332221 57777888887765322 1222222
Q ss_pred HHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-------------CCH
Q 003913 301 LIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG-------------IPT 367 (787)
Q Consensus 301 li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-------------~~~ 367 (787)
.. ....+.|+.+.|.+-|+...+-|---....|+..+.. .+.|+.+.|.+...+++++|++ ||+
T Consensus 150 ~g--CllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv 226 (459)
T KOG4340|consen 150 LG--CLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV 226 (459)
T ss_pred ch--heeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch
Confidence 22 4567889999999999888775433345677766544 4678899999999999888753 222
Q ss_pred ---------------HHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003913 368 ---------------PAFVYKMEAYAKIGEFMKSLEIFREMQER-LGSASVPAYHKIIELLCKAEETELTESLMKEFVET 431 (787)
Q Consensus 368 ---------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 431 (787)
..+|.-...+.+.|+.+.|.+.+..|.-+ ....|.+|...+.-.- -.+++.+..+-+..+.+.
T Consensus 227 rsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~ 305 (459)
T KOG4340|consen 227 RSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ 305 (459)
T ss_pred hcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc
Confidence 12233334467789999999999988622 2345777776554222 234566666666666664
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHhh
Q 003913 432 GMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPNRTIYGIYLESLK-NAGNIEKAEEIFNHMH 498 (787)
Q Consensus 432 g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~~~~~~~li~~~~-~~g~~~~A~~l~~~m~ 498 (787)
. +--..||..++-.||+..-++.|-.++.+-.. -.-.+...|+. ++++. ..-..++|++-++.+.
T Consensus 306 n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 306 N-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred C-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHH
Confidence 3 23468999999999999999999888876322 01123334443 33333 2345666666555543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.2e-05 Score=82.96 Aligned_cols=214 Identities=10% Similarity=0.028 Sum_probs=144.3
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003913 343 AKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTE 422 (787)
Q Consensus 343 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 422 (787)
.+.|++.+|.-.|+...+.++. +..+|-.|.......++-..|+..+++..+.... |....-+|.-.|...|.-.+|+
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence 4667787888788777777654 6777777777777777777788877777765322 5666667777777777777777
Q ss_pred HHHHHHHHcCCC-----C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003913 423 SLMKEFVETGMK-----P---LMPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPNRTIYGIYLESLKNAGNIEKAEE 492 (787)
Q Consensus 423 ~l~~~m~~~g~~-----p---~~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~~~~~~~li~~~~~~g~~~~A~~ 492 (787)
..++.-+....+ + +...-.. ..+.....+....++|-++.. +..+|..++..|.-.|--.|.+++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 777766543210 0 0000000 111222234455666666655 334788888888888888888888888
Q ss_pred HHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHH
Q 003913 493 IFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQR 572 (787)
Q Consensus 493 l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~ 572 (787)
.|+..+... |-|...||.|...++...+.++|+..|++.++ +.|..
T Consensus 452 cf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq----LqP~y---------------------------- 497 (579)
T KOG1125|consen 452 CFEAALQVK--PNDYLLWNRLGATLANGNRSEEAISAYNRALQ----LQPGY---------------------------- 497 (579)
T ss_pred HHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh----cCCCe----------------------------
Confidence 888888764 55678888888888888888888888888886 66653
Q ss_pred HHHHHHHhhhhhhccchhhcce
Q 003913 573 ENLIGLLLGGLCIESDEKRKRH 594 (787)
Q Consensus 573 ~~~~~~ll~~~~~~~~~~~a~~ 594 (787)
+.++..|.-.|...|.+++|..
T Consensus 498 VR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 498 VRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred eeeehhhhhhhhhhhhHHHHHH
Confidence 4455556666666666665554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.017 Score=64.85 Aligned_cols=226 Identities=14% Similarity=0.094 Sum_probs=135.7
Q ss_pred hcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHH
Q 003913 156 RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLD 235 (787)
Q Consensus 156 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~ 235 (787)
..+++..|++..+.+.++.+-.+-..++.+++ +.|.|+.++|..+++.....+.. |..|..++-..|- +.++.+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~---d~~~~d 94 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYR---DLGKLD 94 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHH---HHhhhh
Confidence 55778888888888877642222333333333 45788889999888887766555 7888888888887 788999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHH-HhhhccCC---
Q 003913 236 EACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIW-LHSYQDNI--- 311 (787)
Q Consensus 236 ~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~-~~~~~~~g--- 311 (787)
+|..+|++..+ ..|+......+..++++. +.+.+-.++=-+|-+ ..|...-|-|-+. +......+
T Consensus 95 ~~~~~Ye~~~~---~~P~eell~~lFmayvR~------~~yk~qQkaa~~LyK--~~pk~~yyfWsV~Slilqs~~~~~~ 163 (932)
T KOG2053|consen 95 EAVHLYERANQ---KYPSEELLYHLFMAYVRE------KSYKKQQKAALQLYK--NFPKRAYYFWSVISLILQSIFSENE 163 (932)
T ss_pred HHHHHHHHHHh---hCCcHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH--hCCcccchHHHHHHHHHHhccCCcc
Confidence 99999998886 357766666677777765 344433322222222 1222222222221 11111111
Q ss_pred -----CHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 003913 312 -----DKERISLLKKEMQQAG-FEEGKEVLLSVLRVCAKEGDVEDAEKTWL-RLLESDNGIPTPAFVYKMEAYAKIGEFM 384 (787)
Q Consensus 312 -----~~~~a~~l~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~~~~-~m~~~~~~~~~~~~~~li~~~~~~g~~~ 384 (787)
-..-|.+.++.+.+.+ -.-+..-...-+..+-..|++++|..++. ...+.-...+...-+--++.+...+++.
T Consensus 164 ~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~ 243 (932)
T KOG2053|consen 164 LLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQ 243 (932)
T ss_pred cccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChH
Confidence 1234556666666554 11122222222334456788899988883 4444433334445556688888889999
Q ss_pred HHHHHHHHHHHcCC
Q 003913 385 KSLEIFREMQERLG 398 (787)
Q Consensus 385 ~A~~~~~~m~~~g~ 398 (787)
+..++-.++..+|.
T Consensus 244 ~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 244 ELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHHHHHhCC
Confidence 98888888888753
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0002 Score=71.74 Aligned_cols=180 Identities=13% Similarity=0.058 Sum_probs=129.3
Q ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHH
Q 003913 299 SGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG----KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT--PAFVY 372 (787)
Q Consensus 299 ~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~ 372 (787)
..+..+..+...|++++|...|++.... .|+ ..++..+..++.+.|++++|...++++.+..+.... .++..
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 3444457788999999999999998774 343 246778888999999999999999999987653222 24555
Q ss_pred HHHHHHHc--------CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003913 373 KMEAYAKI--------GEFMKSLEIFREMQERLGSAS-VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINL 443 (787)
Q Consensus 373 li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 443 (787)
+..++.+. |+.++|.+.|+++... .|+ ...+..+..... .... . ......+
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~-------~-------~~~~~~~ 172 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNR-------L-------AGKELYV 172 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHH-------H-------HHHHHHH
Confidence 56666654 7889999999999876 333 233322221110 1000 0 0112356
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 444 TNMYLNLGMHDRLHLAFSECLEKC---RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 444 i~~~~~~g~~~~a~~~~~~m~~~~---~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
...|.+.|++++|...+....+.. +.....+..+..+|.+.|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 677899999999999999988733 234678999999999999999999999988775
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.8e-05 Score=80.47 Aligned_cols=387 Identities=14% Similarity=0.055 Sum_probs=244.3
Q ss_pred CChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChH
Q 003913 271 LSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGK-EVLLSVLRVCAKEGDVE 349 (787)
Q Consensus 271 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~ 349 (787)
++.|+++.|...|-+.+..... +...|+--. .++.+.|++++|++=-.+-++ +.|+- .-|+-...++.-.|+++
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrs--aa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPT-NHVLYSNRS--AAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred cccccHHHHHHHHHHHHccCCC-ccchhcchH--HHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHH
Confidence 5568999999999998877654 667777666 788888888888765554444 67774 47888888999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH--HH--HcCC-----CCCHHHHHHHHHHHHhc-----
Q 003913 350 DAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFRE--MQ--ERLG-----SASVPAYHKIIELLCKA----- 415 (787)
Q Consensus 350 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--m~--~~g~-----~p~~~t~~~li~~~~~~----- 415 (787)
+|..-|.+=++.... +...++-+..++.-.. .+.+.|.. |. ..+. ......|..++..+-+.
T Consensus 88 eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPS-NKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 999999988877643 6677777777772110 11111110 00 0000 00111233333322211
Q ss_pred -----CChHHHHHHHHH-----HHHcC-------CCC------------C----------HHHHHHHHHHHHhcCCHHHH
Q 003913 416 -----EETELTESLMKE-----FVETG-------MKP------------L----------MPSYINLTNMYLNLGMHDRL 456 (787)
Q Consensus 416 -----g~~~~A~~l~~~-----m~~~g-------~~p------------~----------~~t~~~li~~~~~~g~~~~a 456 (787)
.++..|...+.. +...| ..| | ..-+..+.++.-+..+++.|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 111222211111 00111 111 0 12245677788888889999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHH-------HHHHHHHcCCCHHHHHHH
Q 003913 457 HLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCN-------IILSAYLSSGDFVKAEKI 529 (787)
Q Consensus 457 ~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~-------~li~~~~~~g~~~~A~~~ 529 (787)
.+-+....+.. -+..-++....+|...|.+.+.....+...+.|. -...-|+ .+..+|.+.++++.|+.+
T Consensus 244 ~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr--e~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 244 IQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR--ELRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH--HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 99999888743 5666677778899999999999988888887762 2223333 334466778899999999
Q ss_pred HHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCccc
Q 003913 530 YDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMH 607 (787)
Q Consensus 530 ~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~ 607 (787)
|.+.+..- .+|+....+..+-...++.....+. .++. ..--..=.+.+...|++..|...+. +..+|+++..
T Consensus 321 ~~kaLte~--Rt~~~ls~lk~~Ek~~k~~e~~a~~---~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~l 394 (539)
T KOG0548|consen 321 YQKALTEH--RTPDLLSKLKEAEKALKEAERKAYI---NPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARL 394 (539)
T ss_pred HHHHhhhh--cCHHHHHHHHHHHHHHHHHHHHHhh---ChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHH
Confidence 99987543 5677766665544332222211110 0110 1111222667788889988888777 8888999999
Q ss_pred HHHHHHHHHHchhhcCCCccccCCCCCcceEEeeeccchHHHHHHhhccCcccccccchhhcCChhHHHH
Q 003913 608 SVLRRYLYDQYHEWLHPSFKVSDGNDDIPYKYSTISHPYFCFYADKFWPKGRLVIPKLIHRWLTPRALAY 677 (787)
Q Consensus 608 ~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~~~~t~~~~~~~~~~~g~~~~a~~~~~~mi~~gl~P~~lay 677 (787)
|...+-.|.++|.+..|+.-.....+..|.+...|.-....+.....|.++.+.|.+-++. .|+..-+
T Consensus 395 YsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~ 462 (539)
T KOG0548|consen 395 YSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEA 462 (539)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHH
Confidence 9999999999999999888777788888875555555555566666666666666665543 3554433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.8e-05 Score=82.51 Aligned_cols=210 Identities=12% Similarity=0.075 Sum_probs=170.1
Q ss_pred hhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 003913 305 HSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFM 384 (787)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 384 (787)
..+.+.|-...|..+|++. ..|.-+|.+|+..|+..+|..+..+-.++ +||...|..+.+......-++
T Consensus 406 ell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 406 ELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHH
Confidence 4445566667777777654 45678889999999999999999888874 478899999999988888899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003913 385 KSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL 464 (787)
Q Consensus 385 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 464 (787)
+|.++++....+ +-..+.....+.++++++.+.|+.-.+.. ..-..+|..+..++.+.+++..|.+.|....
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 999999876543 11122222334789999999998877632 2346789999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 465 EKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 465 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.+-+-+...||.+-.+|.+.|+-.+|...+.+..+-+ .-+-..|...+....+-|.+++|++.+.+|..
T Consensus 547 tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn--~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 547 TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN--YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC--CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 8878888999999999999999999999999999876 34567788888888999999999999999875
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.2e-05 Score=79.63 Aligned_cols=223 Identities=15% Similarity=0.059 Sum_probs=174.9
Q ss_pred hhhccCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 003913 305 HSYQDNIDKERISLLKKEMQQAGFEE-GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEF 383 (787)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 383 (787)
.-+.++|++.+|.-.|+...+. .| +...|.-|-..-+..++-..|+..+++..+..+. +..+.-.|.-.|...|.-
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhH
Confidence 3346788888888888888775 34 5668888888888999999999999999988764 678888899999999999
Q ss_pred HHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHH
Q 003913 384 MKSLEIFREMQERLGS--------ASVPAYHKIIELLCKAEETELTESLMKEFV-ETGMKPLMPSYINLTNMYLNLGMHD 454 (787)
Q Consensus 384 ~~A~~~~~~m~~~g~~--------p~~~t~~~li~~~~~~g~~~~A~~l~~~m~-~~g~~p~~~t~~~li~~~~~~g~~~ 454 (787)
.+|++.|+..+....+ ++...-+. ..+.....+....++|-++. +.+..+|..++..|.-.|--.|.++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 9999999988654211 00000000 11122223344555555554 4565688889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003913 455 RLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN-TRSCNIILSAYLSSGDFVKAEKIYDLM 533 (787)
Q Consensus 455 ~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m 533 (787)
+|...|+..+...+-|...||-|.-.++...+.++|+..|++.++. +|+ +.++..|.-.|...|.+++|.+.|-+.
T Consensus 448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL---qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL---QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc---CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999999877788999999999999999999999999999985 566 568888889999999999999998876
Q ss_pred HH
Q 003913 534 CL 535 (787)
Q Consensus 534 ~~ 535 (787)
+.
T Consensus 525 L~ 526 (579)
T KOG1125|consen 525 LS 526 (579)
T ss_pred HH
Confidence 64
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0048 Score=69.45 Aligned_cols=38 Identities=16% Similarity=-0.002 Sum_probs=25.9
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHc
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGK 192 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 192 (787)
-+-+++++..-+..++..+..| ..|..++|+|...|..
T Consensus 847 EvEkRNRLklLlp~LE~~i~eG--~~d~a~hnAlaKIyID 884 (1666)
T KOG0985|consen 847 EVEKRNRLKLLLPWLESLIQEG--SQDPATHNALAKIYID 884 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHHhcc--CcchHHHhhhhheeec
Confidence 3446666777777777777777 4577788877766543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00026 Score=68.19 Aligned_cols=119 Identities=8% Similarity=0.030 Sum_probs=66.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCC--HHHH
Q 003913 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM-YLNLGM--HDRL 456 (787)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~-~~~~g~--~~~a 456 (787)
.++.+++...++...+.. +.|...|..+...|...|++++|...|++..+.. +-+...+..+..+ |...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344455555555554442 2355566666666666666666666666665533 2245555555554 244444 3566
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 457 HLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 457 ~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
.+++++.++..+.+..++..+...+.+.|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666665544555566666666666666666666666666655
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0055 Score=74.74 Aligned_cols=261 Identities=11% Similarity=-0.003 Sum_probs=169.1
Q ss_pred hhHHHHHHHHHHHHHcCC------ccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHH
Q 003913 274 YYLQQAEFIFHNLLTSGL------EIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGK----EVLLSVLRVCA 343 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~------~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~----~t~~~li~~~~ 343 (787)
|++++|...+......-- .+....-........+...|++++|...+++....--..+. ...+.+...+.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 588999888887754311 11111111222345567789999999999987763111121 23455666777
Q ss_pred hcCChHHHHHHHHHHHhCCCC---C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHH
Q 003913 344 KEGDVEDAEKTWLRLLESDNG---I--PTPAFVYKMEAYAKIGEFMKSLEIFREMQER----LGS--A-SVPAYHKIIEL 411 (787)
Q Consensus 344 ~~g~~~~A~~~~~~m~~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~t~~~li~~ 411 (787)
..|++++|...+.+.....-. + ...++..+...+...|++++|...+++.... +.. + ....+..+...
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 899999999999887653111 1 1234455677888999999999999886542 211 1 22345556667
Q ss_pred HHhcCChHHHHHHHHHHHHc--CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCHHHH-----HHHHHH
Q 003913 412 LCKAEETELTESLMKEFVET--GMKP--LMPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPNRTIY-----GIYLES 480 (787)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~--g~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~~~~~-----~~li~~ 480 (787)
+...|++++|...+++.... ...+ ...++..+...+...|+.+.|...+..... ........+ ...+..
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 78889999999999887652 1122 234555667788899999999999988864 111111111 112344
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 481 LKNAGNIEKAEEIFNHMHSDQTIGVN---TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 481 ~~~~g~~~~A~~l~~~m~~~~~~~p~---~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+...|+.+.|..++....... .... ...+..+..++...|++++|...+++...
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPE-FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCC-CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566899999999988766532 1111 11245677788999999999999998875
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0039 Score=62.11 Aligned_cols=414 Identities=12% Similarity=0.020 Sum_probs=222.1
Q ss_pred hcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHH
Q 003913 156 RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLD 235 (787)
Q Consensus 156 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~ 235 (787)
..+++..|..+++.-...+. .....+---+..++.+.|++++|..++.-+.+..- |+...|-.|...+. -.|.+.
T Consensus 34 s~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~-~~~el~vnLAcc~F---yLg~Y~ 108 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDD-APAELGVNLACCKF---YLGQYI 108 (557)
T ss_pred hcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCC-CCcccchhHHHHHH---HHHHHH
Confidence 45678888888887765541 11222333455677799999999999998877543 45555555544444 478888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHH
Q 003913 236 EACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKER 315 (787)
Q Consensus 236 ~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~ 315 (787)
+|..+-.+. |+.-..+-++--++.+. ++-++-..+++.+...- -+.-... ........+.+
T Consensus 109 eA~~~~~ka-------~k~pL~~RLlfhlahkl-----ndEk~~~~fh~~LqD~~--EdqLSLA-----svhYmR~HYQe 169 (557)
T KOG3785|consen 109 EAKSIAEKA-------PKTPLCIRLLFHLAHKL-----NDEKRILTFHSSLQDTL--EDQLSLA-----SVHYMRMHYQE 169 (557)
T ss_pred HHHHHHhhC-------CCChHHHHHHHHHHHHh-----CcHHHHHHHHHHHhhhH--HHHHhHH-----HHHHHHHHHHH
Confidence 887765433 44455555555555543 25555555555553211 0111111 11122224789
Q ss_pred HHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--CChHH-------
Q 003913 316 ISLLKKEMQQAGFEEGKEVLLS-VLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKI--GEFMK------- 385 (787)
Q Consensus 316 a~~l~~~m~~~g~~p~~~t~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--g~~~~------- 385 (787)
|.+++++.... .|+-...|. +.-+|.+..-++-+.++++--++.-+. +..+-|.......+. |+..+
T Consensus 170 AIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd-StiA~NLkacn~fRl~ngr~ae~E~k~la 246 (557)
T KOG3785|consen 170 AIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD-STIAKNLKACNLFRLINGRTAEDEKKELA 246 (557)
T ss_pred HHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC-cHHHHHHHHHHHhhhhccchhHHHHHHHH
Confidence 99999998774 344444443 344567888889899888876665322 334444433333332 22221
Q ss_pred --------------------------HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 003913 386 --------------------------SLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPS 439 (787)
Q Consensus 386 --------------------------A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 439 (787)
|++++--+.+. -| ..--.|+--|.+.+++.+|..+.+++.- ..|-.+.
T Consensus 247 dN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~Eyi 320 (557)
T KOG3785|consen 247 DNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYI 320 (557)
T ss_pred hcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCC--CChHHHH
Confidence 22221111111 11 1223345557778888888777665431 2233333
Q ss_pred HHHHHHHHH-----hcCCHHHHHHHHHHHHh-cCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHH
Q 003913 440 YINLTNMYL-----NLGMHDRLHLAFSECLE-KCRPN-RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNI 512 (787)
Q Consensus 440 ~~~li~~~~-----~~g~~~~a~~~~~~m~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ 512 (787)
.-.++.+-. ....+.-|.+.|+..-+ +..-| +.--.++...+.-..++++.+-.++.+..- +..|..---.
T Consensus 321 lKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY--F~NdD~Fn~N 398 (557)
T KOG3785|consen 321 LKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY--FTNDDDFNLN 398 (557)
T ss_pred HHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCcchhhhH
Confidence 333332211 11234456666655443 22222 222344555555556678888777777664 3333333345
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccc-hhh
Q 003913 513 ILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESD-EKR 591 (787)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~-~~~ 591 (787)
+..+++..|.+.+|+++|-.... |++ -+-.+|.+++.-|..+.. .+.
T Consensus 399 ~AQAk~atgny~eaEelf~~is~------~~i--------------------------kn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISG------PEI--------------------------KNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcC------hhh--------------------------hhhHHHHHHHHHHHHhcCCchH
Confidence 67788888888888888876642 221 125677777777766543 333
Q ss_pred cceeEEEEEccCC-cccHHHHHHHHHHchhhcCCCccccCCCCCcc
Q 003913 592 KRHMIRFQFNENS-RMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIP 636 (787)
Q Consensus 592 a~~~~~~~~~p~~-~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p 636 (787)
|-.++-..-.|.+ -+..-++++-|.+++.+=-|...|..-...+|
T Consensus 447 AW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 447 AWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 3222221111222 22233456777777776555555543333333
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00011 Score=72.57 Aligned_cols=307 Identities=12% Similarity=-0.001 Sum_probs=149.1
Q ss_pred HHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-HH
Q 003913 296 DIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGK-EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFV-YK 373 (787)
Q Consensus 296 ~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~l 373 (787)
.+-..+-....+..+|++.+|+.-|....+. .|+. .++---...|...|+-..|..=+..+++.. ||-..-. --
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK--pDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK--PDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC--ccHHHHHHHh
Confidence 3334444455566666677776666665542 2222 122233345666666666666666666543 3322211 12
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003913 374 MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMH 453 (787)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 453 (787)
...+.+.|.+++|..=|+..++.. |+..+ ...++.+.-..++-. .....+..+...|+.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHW----------------VLVQQLKSASGSGDC 171 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCch
Confidence 345666777777777777766552 21110 011111110011100 111122333444555
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003913 454 DRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533 (787)
Q Consensus 454 ~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 533 (787)
..|+.....+++-++-|...|..-..+|...|....|+.-++...+.. .-|..++.-+-..+...|+.+.++...++.
T Consensus 172 ~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs--~DnTe~~ykis~L~Y~vgd~~~sL~~iREC 249 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS--QDNTEGHYKISQLLYTVGDAENSLKEIREC 249 (504)
T ss_pred hhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 555555555555445555555555556666666655555555444432 234445555555555555555555555555
Q ss_pred HHcCCccCHHHH------H-------------------HHHHHHhhcccccc-cccccCCchHHHHHHHHHHhhhhhhcc
Q 003913 534 CLKKYEIESAWM------E-------------------KLDYVLSLNRKEVK-KPVSLNLSSEQRENLIGLLLGGLCIES 587 (787)
Q Consensus 534 ~~~g~~~~p~~~------~-------------------~l~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~ll~~~~~~~ 587 (787)
++ ++|+.- . ++..++..+++.++ .|..... ....+..+-..+...+
T Consensus 250 LK----ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~i----r~~~~r~~c~C~~~d~ 321 (504)
T KOG0624|consen 250 LK----LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMI----RYNGFRVLCTCYREDE 321 (504)
T ss_pred Hc----cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccce----eeeeeheeeecccccC
Confidence 54 444421 1 11122222222222 1100000 0112222223334445
Q ss_pred chhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccccCCCCCcce
Q 003913 588 DEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPY 637 (787)
Q Consensus 588 ~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~ 637 (787)
++.+|++... +.++|+++.++.-.+.+|.....+++|+.-++++.+..+.
T Consensus 322 ~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 322 QFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 5666665554 7777777777777777777777777777777666666554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.014 Score=61.82 Aligned_cols=128 Identities=9% Similarity=0.107 Sum_probs=77.5
Q ss_pred hhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCH
Q 003913 155 MRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCL 234 (787)
Q Consensus 155 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~ 234 (787)
...+..++++.+++.+... ++.....|..-|..-.+..+++..+++|.+....-+ +..-|..-|+---. ..+..
T Consensus 30 ~qt~~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl~YVR~--~~~~~ 103 (656)
T KOG1914|consen 30 AQTQPIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYLSYVRE--TKGKL 103 (656)
T ss_pred HccCCHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHHHHHHH--HccCc
Confidence 3455789999999999876 677888899999999999999999999999887643 56667766664432 22332
Q ss_pred H----HHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHc--CCCCC-ChhhHHHHHHHHHHHHH
Q 003913 235 D----EACSIYNRMIQLGGYQPRPS-LHNSLFRALVS--KPGGL-SKYYLQQAEFIFHNLLT 288 (787)
Q Consensus 235 ~----~A~~l~~~m~~~~g~~pd~~-t~~~ll~~~~~--~~~~~-~~g~~~~A~~~~~~m~~ 288 (787)
. .-.+.|+-....-|+.+-.. .|+.-+.-+-. ..|.. .+.+++...+++++++.
T Consensus 104 ~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 104 FGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred chHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 2 23344554444435444332 24443333211 11111 11255556666666654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00012 Score=66.67 Aligned_cols=92 Identities=12% Similarity=-0.105 Sum_probs=43.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 003913 408 IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI 487 (787)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~ 487 (787)
+...+...|++++|...|+...... +.+..++..+..++.+.|++++|...|+...+..+.+..++..+..++.+.|++
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 3444444444444544444444422 223444444444444444444444444444443344444444444445555555
Q ss_pred HHHHHHHHHhhhC
Q 003913 488 EKAEEIFNHMHSD 500 (787)
Q Consensus 488 ~~A~~l~~~m~~~ 500 (787)
++|...|+...+.
T Consensus 109 ~eAi~~~~~Al~~ 121 (144)
T PRK15359 109 GLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHh
Confidence 5555555544443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0004 Score=66.76 Aligned_cols=160 Identities=16% Similarity=0.068 Sum_probs=125.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003913 371 VYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL 450 (787)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 450 (787)
..+-..+...|+-+.+..+....... .+-|....+..+....+.|++.+|...+++..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44566777778888877777765543 22355566668888888889999988888888754 67888888888889999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 003913 451 GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIY 530 (787)
Q Consensus 451 g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~ 530 (787)
|+.+.|..-|.+..+-.+-+...+|.|.-.|.-.|+.+.|..++......+ +-|...-..|.......|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~--~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP--AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC--CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 999999888888888666677788888888888899999999999888875 347777788888888899999988876
Q ss_pred HHHH
Q 003913 531 DLMC 534 (787)
Q Consensus 531 ~~m~ 534 (787)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 6443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00025 Score=68.23 Aligned_cols=147 Identities=12% Similarity=0.184 Sum_probs=119.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003913 374 MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMH 453 (787)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 453 (787)
+-.|.+.|+++......+.+.. |. . .+...++.+++...++..++.. +.|...|..|...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 5678888888776544432221 11 1 1223567788888888877754 66789999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 003913 454 DRLHLAFSECLEKCRPNRTIYGIYLESL-KNAGN--IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIY 530 (787)
Q Consensus 454 ~~a~~~~~~m~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~ 530 (787)
++|...|+...+..+.+...+..+..++ ...|+ .++|.+++++..+.+ +-+..++..+...+.+.|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d--P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD--ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999987778999999999874 67787 599999999999986 567889999999999999999999999
Q ss_pred HHHHH
Q 003913 531 DLMCL 535 (787)
Q Consensus 531 ~~m~~ 535 (787)
+++++
T Consensus 168 ~~aL~ 172 (198)
T PRK10370 168 QKVLD 172 (198)
T ss_pred HHHHh
Confidence 99997
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00044 Score=78.96 Aligned_cols=146 Identities=13% Similarity=0.146 Sum_probs=105.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003913 365 IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS-VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINL 443 (787)
Q Consensus 365 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 443 (787)
.++.++-.|.......|++++|..+++...+. .|| ......+..++.+.+++++|....++..... +-+......+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 35677777777888888888888888887765 344 4466677778888888888888888877743 3345666777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHH
Q 003913 444 TNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILS 515 (787)
Q Consensus 444 i~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~ 515 (787)
..++.+.|++++|..+|++.....+-+..++..+...+-+.|+.++|...|++..+. ..|-...|+.++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~--~~~~~~~~~~~~~ 230 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA--IGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--hCcchHHHHHHHH
Confidence 777778888888888888887644445777888888888888888888888887776 3456666665543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.001 Score=74.74 Aligned_cols=360 Identities=9% Similarity=-0.053 Sum_probs=175.5
Q ss_pred hHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCH
Q 003913 216 MTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQK 295 (787)
Q Consensus 216 ~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 295 (787)
..|..|-.-|+ ...+...|.+.|++..+.+ ..|......+...+++.. .++.|..+.-..-+.. ..-.
T Consensus 493 paf~~LG~iYr---d~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~------~we~a~~I~l~~~qka-~a~~ 560 (1238)
T KOG1127|consen 493 PAFAFLGQIYR---DSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEES------TWEEAFEICLRAAQKA-PAFA 560 (1238)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccc------cHHHHHHHHHHHhhhc-hHHH
Confidence 34555555555 3345555666666655421 223334444555555542 5555555522211111 1122
Q ss_pred HHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH--
Q 003913 296 DIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEE-GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVY-- 372 (787)
Q Consensus 296 ~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-- 372 (787)
...+|.-+.-.+-+.++...|..-|+...+. .| |...|..+..+|...|++..|.++|.+.....+ ...|..
T Consensus 561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP---~s~y~~fk 635 (1238)
T KOG1127|consen 561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP---LSKYGRFK 635 (1238)
T ss_pred HHhhhhhccccccCccchhhHHHHHHHHhcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc---HhHHHHHH
Confidence 3334444444555555666666555555442 33 344566666666666666666666666555442 122222
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-------cCCC-----
Q 003913 373 KMEAYAKIGEFMKSLEIFREMQER------LGSASVPAYHKIIELLCKAEETELTESLMKEFVE-------TGMK----- 434 (787)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~-------~g~~----- 434 (787)
....-|..|++.+|+..+...... +..--..++-.+...+...|-...|...++.-++ ....
T Consensus 636 ~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~ 715 (1238)
T KOG1127|consen 636 EAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQ 715 (1238)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 233345556666666665554321 1111112222222223223322233322222211 1111
Q ss_pred ---------------CC---HHHHHHHHHHHHhcCCH---H---HHHHHHHHHHhcCCCCHHHHHHHHHHHHh----c--
Q 003913 435 ---------------PL---MPSYINLTNMYLNLGMH---D---RLHLAFSECLEKCRPNRTIYGIYLESLKN----A-- 484 (787)
Q Consensus 435 ---------------p~---~~t~~~li~~~~~~g~~---~---~a~~~~~~m~~~~~p~~~~~~~li~~~~~----~-- 484 (787)
|+ ......|..-.-+.+.. | -|.+.+-.-+ ....+..+|..|+..|.+ .
T Consensus 716 Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl-sl~~~~~~WyNLGinylr~f~~l~e 794 (1238)
T KOG1127|consen 716 WIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL-SLAIHMYPWYNLGINYLRYFLLLGE 794 (1238)
T ss_pred HHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH-HHhhccchHHHHhHHHHHHHHHcCC
Confidence 22 11111111111112211 1 0111111111 112234455555544443 1
Q ss_pred --CCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccc
Q 003913 485 --GNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKP 562 (787)
Q Consensus 485 --g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~ 562 (787)
.+...|...+.+.++.. ..|..+||.|.-. ..-|.+.-|...|-+-+. ..|.
T Consensus 795 t~~~~~~Ai~c~KkaV~L~--ann~~~WnaLGVl-sg~gnva~aQHCfIks~~----sep~------------------- 848 (1238)
T KOG1127|consen 795 TMKDACTAIRCCKKAVSLC--ANNEGLWNALGVL-SGIGNVACAQHCFIKSRF----SEPT------------------- 848 (1238)
T ss_pred cchhHHHHHHHHHHHHHHh--hccHHHHHHHHHh-hccchhhhhhhhhhhhhh----cccc-------------------
Confidence 12345666666666552 4466666666544 444555555555544443 2332
Q ss_pred cccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccc
Q 003913 563 VSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKV 628 (787)
Q Consensus 563 ~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 628 (787)
...+|..+.-.|....+++.|..++. ..++|.+...+.-.+-+-...|+.-++...+
T Consensus 849 ---------~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lf 907 (1238)
T KOG1127|consen 849 ---------CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILF 907 (1238)
T ss_pred ---------chhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHH
Confidence 26789888888888899999988887 7888999988888888888888877776665
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00054 Score=79.44 Aligned_cols=207 Identities=11% Similarity=0.142 Sum_probs=170.2
Q ss_pred CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 003913 329 EEG-KEVLLSVLRVCAKEGDVEDAEKTWLRLLES-DNGI---PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVP 403 (787)
Q Consensus 329 ~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 403 (787)
.|| ...|-.-|......+++++|+++.++.+.. ++.- -...|.++++.-...|.-+...++|++..+.. -...
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 354 567888888899999999999999998865 2211 13478888888888888889999999998752 1245
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHH
Q 003913 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP--NRTIYGIYLESL 481 (787)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p--~~~~~~~li~~~ 481 (787)
.|..|...|.+.+..++|-++++.|.+.- .-....|...+..+.+..+-+.|..++.+.++-.+. .+....-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 68899999999999999999999999842 356789999999999999999999999998874444 445555566677
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCcc
Q 003913 482 KNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEI 540 (787)
Q Consensus 482 ~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 540 (787)
.+.|+.+.+..+|+...... |--...|+..|+.-.++|+.+.+..+|++.+..++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 78999999999999999874 5567899999999999999999999999999877543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.4e-06 Score=89.58 Aligned_cols=224 Identities=14% Similarity=0.063 Sum_probs=154.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 003913 406 HKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG 485 (787)
Q Consensus 406 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g 485 (787)
..+...+.+.|-...|..++++.. .+..+|.+|+..|+..+|..+...-.+ .+|+...|..+.+.....-
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChH
Confidence 344556666666666666666543 345566667777776677666666555 4666666766666666666
Q ss_pred CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhccccccccccc
Q 003913 486 NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSL 565 (787)
Q Consensus 486 ~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~ 565 (787)
-+++|.++++....+ .-..+..-..+.+++.++.+.|+.-.+ ++|-.
T Consensus 472 ~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~----~nplq--------------------- 518 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLE----INPLQ--------------------- 518 (777)
T ss_pred HHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhh----cCccc---------------------
Confidence 666777666654332 111111122335667777777666554 33321
Q ss_pred CCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccccCCCCCcceEEeeec
Q 003913 566 NLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPYKYSTIS 643 (787)
Q Consensus 566 ~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~~~~t~~ 643 (787)
..+|-.+..+..+.++.+.+...+. ..++|++...++.++..|.+.|+-.+|...+.++++-+...|..|.
T Consensus 519 -------~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWE 591 (777)
T KOG1128|consen 519 -------LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWE 591 (777)
T ss_pred -------hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeee
Confidence 5678777777788888888888877 8889999999999999999999999998888888888877788888
Q ss_pred cchHHHHHHhhccCcccccccchh---hcCChhHHHHHh
Q 003913 644 HPYFCFYADKFWPKGRLVIPKLIH---RWLTPRALAYWF 679 (787)
Q Consensus 644 ~~~~~~~~~g~~~~a~~~~~~mi~---~gl~P~~lay~~ 679 (787)
+.......-|++++|++.++++.+ ++-.|.++.-..
T Consensus 592 Nymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv 630 (777)
T KOG1128|consen 592 NYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIV 630 (777)
T ss_pred chhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHH
Confidence 888888888999999988887664 444555554433
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.014 Score=58.24 Aligned_cols=303 Identities=16% Similarity=0.140 Sum_probs=161.2
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHH---HHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003913 186 LADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIV---AYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFR 262 (787)
Q Consensus 186 li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~---~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~ 262 (787)
+-..+...|++.+|+.-|....+- |...|-++.. .|. ..|+-.-|+.-+....+ ++||-..-..--.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yL---AmGksk~al~Dl~rVle---lKpDF~~ARiQRg 113 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYL---AMGKSKAALQDLSRVLE---LKPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHh---hhcCCccchhhHHHHHh---cCccHHHHHHHhc
Confidence 333444556666666666666553 3334443332 233 35666666666666665 4566432211111
Q ss_pred H-HHcCCCCCChhhHHHHHHHHHHHHHcCCcc--CHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003913 263 A-LVSKPGGLSKYYLQQAEFIFHNLLTSGLEI--QKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVL 339 (787)
Q Consensus 263 ~-~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li 339 (787)
. +.+ .|.+++|..=|+.++.....- ....++-++ +.+++ ......+
T Consensus 114 ~vllK------~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~----------------~~~e~---------~~l~~ql 162 (504)
T KOG0624|consen 114 VVLLK------QGELEQAEADFDQVLQHEPSNGLVLEAQSKLA----------------LIQEH---------WVLVQQL 162 (504)
T ss_pred hhhhh------cccHHHHHHHHHHHHhcCCCcchhHHHHHHHH----------------hHHHH---------HHHHHHH
Confidence 1 111 156667766666666544311 011111111 01111 1122233
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 003913 340 RVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETE 419 (787)
Q Consensus 340 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 419 (787)
..+.-.|+...|+.....+++..+ -|...|..-..+|...|++..|+.=++...+.. .-|+.++--+-..+...|+.+
T Consensus 163 ~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 163 KSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHH
Confidence 334445555555555555555432 244455555556666666666555444443321 124444444455555556666
Q ss_pred HHHHHHHHHHHcCCCCCHHH----HHH-------H--HHHHHhcCCHHHHHHHHHHHHhcCCC-C---HHHHHHHHHHHH
Q 003913 420 LTESLMKEFVETGMKPLMPS----YIN-------L--TNMYLNLGMHDRLHLAFSECLEKCRP-N---RTIYGIYLESLK 482 (787)
Q Consensus 420 ~A~~l~~~m~~~g~~p~~~t----~~~-------l--i~~~~~~g~~~~a~~~~~~m~~~~~p-~---~~~~~~li~~~~ 482 (787)
.++...++.++ +.||... |-. | +......+++.++.+..+..++..+- . ...+..+-.+|.
T Consensus 241 ~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~ 318 (504)
T KOG0624|consen 241 NSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYR 318 (504)
T ss_pred HHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccc
Confidence 66555555554 3344221 111 1 12233456677777777776652111 2 233445566777
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 483 NAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 483 ~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
..|++.+|++...+..+.. +.|+.++.--..+|.-...++.|+.-|+...+
T Consensus 319 ~d~~~~eAiqqC~evL~~d--~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 319 EDEQFGEAIQQCKEVLDID--PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred ccCCHHHHHHHHHHHHhcC--chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 7889999999999988863 34588888888899999999999999998886
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0011 Score=76.59 Aligned_cols=220 Identities=17% Similarity=0.177 Sum_probs=134.0
Q ss_pred CHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCcc
Q 003913 214 SEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEI 293 (787)
Q Consensus 214 d~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p 293 (787)
+...|-.|+..+. ..+++++|.++.+...+ ..|+...+-.+...+.... ++..++..+ .+.
T Consensus 30 n~~a~~~Li~~~~---~~~~~deai~i~~~~l~---~~P~~i~~yy~~G~l~~q~-----~~~~~~~lv--~~l------ 90 (906)
T PRK14720 30 KFKELDDLIDAYK---SENLTDEAKDICEEHLK---EHKKSISALYISGILSLSR-----RPLNDSNLL--NLI------ 90 (906)
T ss_pred hHHHHHHHHHHHH---hcCCHHHHHHHHHHHHH---hCCcceehHHHHHHHHHhh-----cchhhhhhh--hhh------
Confidence 4466777888886 57888888888886665 3566555444444333222 243333333 111
Q ss_pred CHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003913 294 QKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYK 373 (787)
Q Consensus 294 ~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 373 (787)
.......++..+..+...|... .-+...+..+..+|-+.|+.++|..+|+++++..+. |..+.|.+
T Consensus 91 -----------~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~ 156 (906)
T PRK14720 91 -----------DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKL 156 (906)
T ss_pred -----------hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHH
Confidence 2333344454444555555553 224457777888888888888888888888888743 77788888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------------------CCC
Q 003913 374 MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVET-------------------GMK 434 (787)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~-------------------g~~ 434 (787)
...|+.. ++++|.+++.+.... +...+++.++.++|.++... |..
T Consensus 157 AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~ 220 (906)
T PRK14720 157 ATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFT 220 (906)
T ss_pred HHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccc
Confidence 8888888 888888888776654 33444555555555555442 212
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003913 435 PLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLK 482 (787)
Q Consensus 435 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~ 482 (787)
--..++-.|-..|-...+++++..+++.+++..+.|.....-++..|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 223344444455666666777777777776655556666666666665
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.7e-05 Score=67.81 Aligned_cols=107 Identities=9% Similarity=-0.017 Sum_probs=93.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 003913 423 SLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT 502 (787)
Q Consensus 423 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 502 (787)
.++++.++ +.|+ .+..+...+...|++++|...|.......+.+..+|..+..++.+.|++++|...|++.....
T Consensus 14 ~~~~~al~--~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~- 88 (144)
T PRK15359 14 DILKQLLS--VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD- 88 (144)
T ss_pred HHHHHHHH--cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 45555554 3444 355678889999999999999999998778899999999999999999999999999999975
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 503 IGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 503 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+.+...+..+..++...|+.++|+..|+..++
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66889999999999999999999999999987
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0015 Score=74.59 Aligned_cols=184 Identities=8% Similarity=0.046 Sum_probs=141.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003913 328 FEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHK 407 (787)
Q Consensus 328 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 407 (787)
...+...+..|.....+.|++++|..+++...+..+. +......+...+.+.+++++|+..+++....... +....+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 3446788888999999999999999999999988654 5667778899999999999999999999887432 5667778
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 003913 408 IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI 487 (787)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~ 487 (787)
+..++.+.|++++|..+|+++...+ .-+..++..+..++-..|+.++|...|+...+...+....|+.++. ++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~------~~ 232 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV------DL 232 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH------HH
Confidence 8889999999999999999999833 3448899999999999999999999999998866777777776653 34
Q ss_pred HHHHHHHHHhhhCCC---CCCCHHHHHHHHHHHHcC
Q 003913 488 EKAEEIFNHMHSDQT---IGVNTRSCNIILSAYLSS 520 (787)
Q Consensus 488 ~~A~~l~~~m~~~~~---~~p~~~t~~~li~~~~~~ 520 (787)
..-..+++++.-.+. .+....+...+|.-|.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 233 NADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 445566666654331 222334555555555443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.005 Score=69.53 Aligned_cols=85 Identities=13% Similarity=0.094 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003913 453 HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDL 532 (787)
Q Consensus 453 ~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 532 (787)
...|...+.+.++.+..+..+||.|.-. ...|++.-|...|-+-.... +-+..+|..+...+.++.+++-|...|..
T Consensus 799 ~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se--p~~~~~W~NlgvL~l~n~d~E~A~~af~~ 875 (1238)
T KOG1127|consen 799 ACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE--PTCHCQWLNLGVLVLENQDFEHAEPAFSS 875 (1238)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc--ccchhheeccceeEEecccHHHhhHHHHh
Confidence 3456777777766666777777777655 55567777776666665553 45677788777778888888888888877
Q ss_pred HHHcCCccCHHH
Q 003913 533 MCLKKYEIESAW 544 (787)
Q Consensus 533 m~~~g~~~~p~~ 544 (787)
.+. ++|..
T Consensus 876 ~qS----LdP~n 883 (1238)
T KOG1127|consen 876 VQS----LDPLN 883 (1238)
T ss_pred hhh----cCchh
Confidence 775 66653
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00014 Score=65.56 Aligned_cols=98 Identities=14% Similarity=0.003 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHH
Q 003913 436 LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILS 515 (787)
Q Consensus 436 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~ 515 (787)
+......+...+...|++++|...|+.+....+.+...|..+...|.+.|++++|...|++..+.+ +.+..+|..+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHH
Confidence 345566677777788888888888888777556677888888888888888888888888877764 556777777888
Q ss_pred HHHcCCCHHHHHHHHHHHHH
Q 003913 516 AYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~ 535 (787)
.|...|++++|...|++..+
T Consensus 94 ~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888888776
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0012 Score=63.53 Aligned_cols=161 Identities=10% Similarity=0.022 Sum_probs=131.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003913 336 LSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKA 415 (787)
Q Consensus 336 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 415 (787)
..+-..+...|+-+.+..+......... .|....+..+....+.|++.+|...|++.... -++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 5566677778888888887776554432 25566667899999999999999999999875 466899999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003913 416 EETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFN 495 (787)
Q Consensus 416 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 495 (787)
|+.++|..-|.+..+.- .-+...++.|.-.|.-.|+.+.|..++......-.-|..+-..|.......|++++|..+-.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 99999999999998842 22467788888889999999999999998877656688888899999999999999998876
Q ss_pred Hhhh
Q 003913 496 HMHS 499 (787)
Q Consensus 496 ~m~~ 499 (787)
.-..
T Consensus 227 ~e~~ 230 (257)
T COG5010 227 QELL 230 (257)
T ss_pred cccc
Confidence 6543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00036 Score=80.39 Aligned_cols=246 Identities=11% Similarity=0.082 Sum_probs=174.3
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003913 327 GFEEG-KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAY 405 (787)
Q Consensus 327 g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 405 (787)
...|+ ...+..|+..+...+++++|.++.+...+..+. ....|-.+...|.+.++.++|..+ .
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~------------- 88 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--N------------- 88 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--h-------------
Confidence 34554 557889999999999999999999977776543 334444444477777776666555 2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 003913 406 HKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG 485 (787)
Q Consensus 406 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g 485 (787)
++.......++.....+...|.+. .-+..++..|..+|-+.|+.++|..+|+++++-.+-|+.+.|.+...|+..
T Consensus 89 --~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 89 --LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE- 163 (906)
T ss_pred --hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-
Confidence 333333444444444455555553 234568889999999999999999999999996688999999999999999
Q ss_pred CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhccccccccccc
Q 003913 486 NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSL 565 (787)
Q Consensus 486 ~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~ 565 (787)
++++|++++.+.... |...+++..+.+++.++.. .+|+-++.+..........+.
T Consensus 164 dL~KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~----~~~~d~d~f~~i~~ki~~~~~----- 218 (906)
T PRK14720 164 DKEKAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVH----YNSDDFDFFLRIERKVLGHRE----- 218 (906)
T ss_pred hHHHHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHh----cCcccchHHHHHHHHHHhhhc-----
Confidence 999999999888764 6677789999999999997 444433332222221110000
Q ss_pred CCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcC
Q 003913 566 NLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLH 623 (787)
Q Consensus 566 ~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~ 623 (787)
..--..++--|-.-|....+++.+..+++ ++++|+|..+..-|+..|. +.+.+
T Consensus 219 ---~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~ 273 (906)
T PRK14720 219 ---FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD 273 (906)
T ss_pred ---cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC
Confidence 00114566666677788888999999998 8999999988888888887 34444
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.5e-05 Score=52.32 Aligned_cols=33 Identities=39% Similarity=0.681 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003913 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPL 436 (787)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 436 (787)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0062 Score=63.85 Aligned_cols=183 Identities=11% Similarity=0.032 Sum_probs=125.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003913 330 EGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKII 409 (787)
Q Consensus 330 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 409 (787)
|+...+...+.+......-..+...+.+..+.+ -...+--..-.+...|++++|+..++.+... .+-|..-+....
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~ 347 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSKRG---GLAAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAG 347 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhCcc---chHHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 344455555554444333333333333333211 1222223344556778888888888887765 334666666777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH
Q 003913 410 ELLCKAEETELTESLMKEFVETGMKPL-MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIE 488 (787)
Q Consensus 410 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~ 488 (787)
..+...++..+|.+.++++... .|+ ......+.++|.+.|++.+|..+++......+-|...|..|..+|...|+..
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 348 DILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchH
Confidence 8888888888998888888873 555 5666777888888888888888888888777888888999999998888888
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 003913 489 KAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKK 537 (787)
Q Consensus 489 ~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (787)
+|..-..++ |...|+++.|...+....+..
T Consensus 426 ~a~~A~AE~-------------------~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 426 EALLARAEG-------------------YALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHH-------------------HHhCCCHHHHHHHHHHHHHhc
Confidence 777655443 556788888888888877643
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0024 Score=69.12 Aligned_cols=171 Identities=15% Similarity=0.184 Sum_probs=115.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 003913 339 LRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEET 418 (787)
Q Consensus 339 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 418 (787)
|.+......|.+|..+++.+..... -..-|..+.+.|+..|+++.|.++|.+.- .++-.|..|.++|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 3444566777788888877766543 23446667778888888888888886431 244567778888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 003913 419 ELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMH 498 (787)
Q Consensus 419 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 498 (787)
+.|.++-.+.. |-......|.+-..-.-+.|++.+|.++|-.+- .|+. .|.+|-+.|..+..+.+.++-.
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~---~p~~-----aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG---EPDK-----AIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc---CchH-----HHHHHHhhCcchHHHHHHHHhC
Confidence 88877765543 334445566666666777788888887775543 4543 3778888888888887776654
Q ss_pred hCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 499 SDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 499 ~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
... -..|...+..-|-..|+...|...|-+..
T Consensus 878 ~d~----l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 878 GDH----LHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred hhh----hhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 322 23466677777888888888888776654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.7e-05 Score=52.11 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 003913 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS 401 (787)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 401 (787)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888888876
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00092 Score=64.22 Aligned_cols=150 Identities=15% Similarity=0.174 Sum_probs=91.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----
Q 003913 374 MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLN---- 449 (787)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~---- 449 (787)
...|+..|++++|++...... +......=...+.+..+.+.|.+.+++|.+- .+..|.+-|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhcc
Confidence 445666677777776665521 2222222234455666677777777777652 244555555555544
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHH-HHH
Q 003913 450 LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVK-AEK 528 (787)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~-A~~ 528 (787)
.+.+.+|.-+|++|.+..+|+..+-|.+..++...|++++|..++++...+. ..+..+...+|-.-...|...+ ..+
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCChHHHHH
Confidence 3457777777777777777777777777777777777888887777777764 3455666555555555555433 344
Q ss_pred HHHHHH
Q 003913 529 IYDLMC 534 (787)
Q Consensus 529 ~~~~m~ 534 (787)
.+..+.
T Consensus 264 ~l~QLk 269 (299)
T KOG3081|consen 264 NLSQLK 269 (299)
T ss_pred HHHHHH
Confidence 444444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00066 Score=61.11 Aligned_cols=96 Identities=11% Similarity=-0.033 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 003913 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN 483 (787)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~ 483 (787)
....+...+...|+.++|.+.++.+...+ +.+...+..+...|.+.|++++|..+++...+..+.+..++..+...|..
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 34445555566666666666666665543 33555666666666666666666666666665445566666666777777
Q ss_pred cCCHHHHHHHHHHhhhC
Q 003913 484 AGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 484 ~g~~~~A~~l~~~m~~~ 500 (787)
.|++++|...|++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777777665
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00051 Score=72.55 Aligned_cols=122 Identities=16% Similarity=0.176 Sum_probs=75.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 003913 407 KIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGN 486 (787)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~ 486 (787)
+|+..+...++++.|..+++++.+.. |+ ....|+..+...++-.+|.+++.+.++..+.+......-...|.+.++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 34444444555666666666655543 33 233355555555566666666666665445566666666666777777
Q ss_pred HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 487 IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 487 ~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
++.|+++.+++.+.. |-+..+|..|..+|.+.|++++|+..++.+.
T Consensus 250 ~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777753 3344577777777777777777777777665
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00065 Score=71.77 Aligned_cols=123 Identities=11% Similarity=0.043 Sum_probs=79.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003913 373 KMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM 452 (787)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 452 (787)
|+..+...++++.|.++|+++.+.. |+. ...+++.+...++-.+|.+++.+.++.. +-+......-...|.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 3444444556666666666665552 332 2235555555566666666666666432 3345555555666777777
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 453 HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 453 ~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
.+.|..+.+++.+-.+-+..+|..|..+|.+.|+++.|+..++.++-.
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 777777777777655666778888999999999999998888887743
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0014 Score=68.53 Aligned_cols=147 Identities=12% Similarity=0.099 Sum_probs=120.9
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChH
Q 003913 341 VCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS-VPAYHKIIELLCKAEETE 419 (787)
Q Consensus 341 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~ 419 (787)
.+...|.+++|+..++.+.+.-+. |...+....+.+.+.++..+|.+.++++... .|+ ...+-.+..+|.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 345689999999999998887543 6666677899999999999999999999876 455 566777889999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 420 LTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 420 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
+|..+++...... +-|...|..|..+|...|+..++..... .+|...|+++.|...+....+
T Consensus 392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------E~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA-----------------EGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH-----------------HHHHhCCCHHHHHHHHHHHHH
Confidence 9999999988754 6788999999999999999888877654 456778999999999999888
Q ss_pred CCCCCCCHHHH
Q 003913 500 DQTIGVNTRSC 510 (787)
Q Consensus 500 ~~~~~p~~~t~ 510 (787)
.. +++..+|
T Consensus 454 ~~--~~~~~~~ 462 (484)
T COG4783 454 QV--KLGFPDW 462 (484)
T ss_pred hc--cCCcHHH
Confidence 73 4555555
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.3e-05 Score=50.39 Aligned_cols=31 Identities=29% Similarity=0.371 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 003913 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGS 399 (787)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 399 (787)
+|+++|.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.8e-05 Score=50.05 Aligned_cols=33 Identities=27% Similarity=0.518 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003913 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKP 435 (787)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 435 (787)
.+|+++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578889999999999999999999998888877
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0063 Score=67.11 Aligned_cols=257 Identities=14% Similarity=0.126 Sum_probs=155.4
Q ss_pred cCHHHHHHHHH--HHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCC------
Q 003913 178 FDFALATKLAD--YMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGG------ 249 (787)
Q Consensus 178 ~~~~~~~~li~--~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g------ 249 (787)
-|..+--++++ .|...|+.+.|.+-.+-+.. ...|..|.+.|+ +..+++-|.-.+..|....|
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McV---kT~RLDVAkVClGhm~~aRgaRAlR~ 794 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCV---KTRRLDVAKVCLGHMKNARGARALRR 794 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhh---hhccccHHHHhhhhhhhhhhHHHHHH
Confidence 36667777765 46788999999998888764 578999999999 89999999888888764322
Q ss_pred --CCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcC
Q 003913 250 --YQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAG 327 (787)
Q Consensus 250 --~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g 327 (787)
-.|+..... +..++-.. |.+++|+.++++-.+.++ +- ..|...|.|++|+++-+.=-+..
T Consensus 795 a~q~~~e~eak--vAvLAieL-----gMlEeA~~lYr~ckR~DL---------lN--KlyQs~g~w~eA~eiAE~~DRiH 856 (1416)
T KOG3617|consen 795 AQQNGEEDEAK--VAVLAIEL-----GMLEEALILYRQCKRYDL---------LN--KLYQSQGMWSEAFEIAETKDRIH 856 (1416)
T ss_pred HHhCCcchhhH--HHHHHHHH-----hhHHHHHHHHHHHHHHHH---------HH--HHHHhcccHHHHHHHHhhcccee
Confidence 123222111 12222222 589999999988765332 22 56778888999888765433222
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHHcCChHHHHH-HHHHHHHcCCCCCHHH
Q 003913 328 FEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVY--KMEAYAKIGEFMKSLE-IFREMQERLGSASVPA 404 (787)
Q Consensus 328 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~-~~~~m~~~g~~p~~~t 404 (787)
+ ..||..-..-+-..++.+.|.+.|++.-. ..++. |+. ....+++ +.+++. |...
T Consensus 857 L---r~Tyy~yA~~Lear~Di~~AleyyEK~~~-------hafev~rmL~------e~p~~~e~Yv~~~~------d~~L 914 (1416)
T KOG3617|consen 857 L---RNTYYNYAKYLEARRDIEAALEYYEKAGV-------HAFEVFRMLK------EYPKQIEQYVRRKR------DESL 914 (1416)
T ss_pred h---hhhHHHHHHHHHhhccHHHHHHHHHhcCC-------hHHHHHHHHH------hChHHHHHHHHhcc------chHH
Confidence 2 24555555555667888888888875422 12211 111 1111222 222221 3344
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 003913 405 YHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA 484 (787)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~ 484 (787)
|.-....+-..|+.+.|+.+|....+ |.++++..|-.|+.++|-++-++ .-|......|...|-..
T Consensus 915 ~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~ 980 (1416)
T KOG3617|consen 915 YSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYEND 980 (1416)
T ss_pred HHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhh
Confidence 44455555666777777777665543 45566666666666666666554 23555555666666666
Q ss_pred CCHHHHHHHHHHh
Q 003913 485 GNIEKAEEIFNHM 497 (787)
Q Consensus 485 g~~~~A~~l~~~m 497 (787)
|++.+|..+|.+.
T Consensus 981 g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 981 GDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.034 Score=53.37 Aligned_cols=188 Identities=15% Similarity=0.178 Sum_probs=91.5
Q ss_pred CCCHHHHHHHHHHHHH---cC-CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 003913 310 NIDKERISLLKKEMQQ---AG-FEEGKEV-LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFM 384 (787)
Q Consensus 310 ~g~~~~a~~l~~~m~~---~g-~~p~~~t-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 384 (787)
..+.+++++++.+|.. .| ..++..+ |--+.-+....|+.+.|...++.+...-+. +..+-..-.--+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhchh
Confidence 3446666666666643 23 4555543 445555556667777777777666655321 1111111112233346666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003913 385 KSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL 464 (787)
Q Consensus 385 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 464 (787)
+|.++++.+.+.. +.|.++|--=+...-..|+.-+|++-+.+-.+. +..|...|.-|...|...|++++|.-.+++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 6666666666553 234455544444444445444554444444432 23445555555555555555555555555544
Q ss_pred hcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhC
Q 003913 465 EKCRPNRTIYGIYLESLKNAG---NIEKAEEIFNHMHSD 500 (787)
Q Consensus 465 ~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~ 500 (787)
=..|-+...+..+.+.+--.| +++-|.+.|.+..+.
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 333333444444444333222 334455555554443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0098 Score=57.42 Aligned_cols=172 Identities=15% Similarity=0.103 Sum_probs=98.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 003913 318 LLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERL 397 (787)
Q Consensus 318 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 397 (787)
++.+.+......-+......-...|++.|++++|.+...... +....-.=+..+.+..+.+-|.+.+++|.+-
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i- 166 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI- 166 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-
Confidence 344444444333343334444455667777777776655411 2233333355556666777777777777654
Q ss_pred CCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 003913 398 GSASVPAYHKIIELLCK----AEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTI 473 (787)
Q Consensus 398 ~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~ 473 (787)
-+..|.+-|..++.+ .+.+..|.-+|++|-+. ..|+..+.+....++...|++++|..+++..+.....++.+
T Consensus 167 --ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 167 --DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred --chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 244455545544443 34566777777777653 46777777777777777777777777777777655556666
Q ss_pred HHHHHHHHHhcCCHHH-HHHHHHHhhh
Q 003913 474 YGIYLESLKNAGNIEK-AEEIFNHMHS 499 (787)
Q Consensus 474 ~~~li~~~~~~g~~~~-A~~l~~~m~~ 499 (787)
...+|..-...|.-.+ -.+.+.+++.
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 6666555555554433 3344444444
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.64 E-value=5.5e-05 Score=48.07 Aligned_cols=29 Identities=28% Similarity=0.483 Sum_probs=15.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 003913 509 SCNIILSAYLSSGDFVKAEKIYDLMCLKK 537 (787)
Q Consensus 509 t~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (787)
||++||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555444
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.05 Score=52.31 Aligned_cols=189 Identities=13% Similarity=0.078 Sum_probs=140.1
Q ss_pred cCChHHHHHHHHHHHhC---C-CCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCh
Q 003913 345 EGDVEDAEKTWLRLLES---D-NGIPTP-AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKI-IELLCKAEET 418 (787)
Q Consensus 345 ~g~~~~A~~~~~~m~~~---~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-i~~~~~~g~~ 418 (787)
..+.++..+++.+++.. | ..++.. .|.-++-+...+|+.+.|...++++..+- |...-...| ..-+-..|+.
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 45566666666666542 3 334443 34455667778899999999999998762 333211111 1124456899
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 003913 419 ELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMH 498 (787)
Q Consensus 419 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 498 (787)
++|.++++.+++.. +.|..+|--=+...-..|+.-+|++-+....+.+..|...|.-|...|...|++++|.-.++++.
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99999999999876 66778888777777888888899999999999899999999999999999999999999999999
Q ss_pred hCCCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHcCCccCH
Q 003913 499 SDQTIGVNTRSCNIILSAYLSSG---DFVKAEKIYDLMCLKKYEIES 542 (787)
Q Consensus 499 ~~~~~~p~~~t~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~~p 542 (787)
-.. |-+...|..+...+.-.| +++-|.++|.+.++ +.|
T Consensus 182 l~~--P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk----l~~ 222 (289)
T KOG3060|consen 182 LIQ--PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK----LNP 222 (289)
T ss_pred HcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----hCh
Confidence 864 446666666666554444 46678888888886 666
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0041 Score=56.66 Aligned_cols=123 Identities=15% Similarity=0.258 Sum_probs=74.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH----HHHHHH
Q 003913 405 YHKIIELLCKAEETELTESLMKEFVETGMKPL---MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNR----TIYGIY 477 (787)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~----~~~~~l 477 (787)
|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+.... |+. ...-.|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHH
Confidence 33333333 3566666666666666642 222 2233344566667777777777777776632 222 244456
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003913 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533 (787)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 533 (787)
...+...|++++|+..++...... .....+......|.+.|++++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~---~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEA---FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcc---hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 677777788888888876654432 34456666777788888888888777653
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00067 Score=55.97 Aligned_cols=94 Identities=22% Similarity=0.236 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc
Q 003913 440 YINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS 519 (787)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~ 519 (787)
+..+...+...|++++|...+....+..+.+...+..+...|...|++++|.+.|+...... +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHHHH
Confidence 34455555666666666666666655444444566666666666677777777777666653 3344566666666777
Q ss_pred CCCHHHHHHHHHHHHH
Q 003913 520 SGDFVKAEKIYDLMCL 535 (787)
Q Consensus 520 ~g~~~~A~~~~~~m~~ 535 (787)
.|++++|...+.+..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777666653
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0012 Score=67.48 Aligned_cols=130 Identities=15% Similarity=0.168 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 003913 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLN-LGMHDRLHLAFSECLEKCRPNRTIYGIYLESL 481 (787)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~-~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~ 481 (787)
.+|..++...-+.+..+.|..+|.+.++.+ ..+..+|......-.+ .++.+.|..+|+..++..+.+...|...++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 467788888888888899999999988643 2334555555555333 56677799999999988888999999999999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 482 KNAGNIEKAEEIFNHMHSDQTIGVNT---RSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 482 ~~~g~~~~A~~l~~~m~~~~~~~p~~---~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.+.|+.+.|..+|++.... ++++. ..|...+.-=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999876 43333 5999999999999999999999999987
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.54 E-value=9e-05 Score=47.04 Aligned_cols=28 Identities=39% Similarity=0.802 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003913 369 AFVYKMEAYAKIGEFMKSLEIFREMQER 396 (787)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 396 (787)
+|++||++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444444
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0013 Score=69.86 Aligned_cols=124 Identities=7% Similarity=-0.017 Sum_probs=92.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 003913 327 GFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES--DNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPA 404 (787)
Q Consensus 327 g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 404 (787)
+...+......+++.+....+++++..++.+.... ....-..|..++|+.|.+.|..++|+++++.=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556677777788877778888888877777665 2112233445788888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003913 405 YHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL 450 (787)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 450 (787)
+|.||..+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888887777677777777777776665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0021 Score=52.84 Aligned_cols=94 Identities=18% Similarity=0.160 Sum_probs=54.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 003913 406 HKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG 485 (787)
Q Consensus 406 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g 485 (787)
..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.|....+..+.+..++..+...+...|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 344455555566666666666555432 2223455555566666666666666666665544444556666666777777
Q ss_pred CHHHHHHHHHHhhhC
Q 003913 486 NIEKAEEIFNHMHSD 500 (787)
Q Consensus 486 ~~~~A~~l~~~m~~~ 500 (787)
++++|...+++..+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 777777777666543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0069 Score=55.17 Aligned_cols=86 Identities=9% Similarity=0.147 Sum_probs=37.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003913 340 RVCAKEGDVEDAEKTWLRLLESDNGIPT--PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEE 417 (787)
Q Consensus 340 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 417 (787)
..+...|++++|...|+.+......+.. ...-.|...+...|++++|+..++...... .....+......|.+.|+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCC
Confidence 4444455555555555555444322211 122223444455555555555554432221 122233344455555555
Q ss_pred hHHHHHHHHH
Q 003913 418 TELTESLMKE 427 (787)
Q Consensus 418 ~~~A~~l~~~ 427 (787)
.++|...|+.
T Consensus 134 ~~~A~~~y~~ 143 (145)
T PF09976_consen 134 YDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHH
Confidence 5555555543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0023 Score=53.20 Aligned_cols=75 Identities=11% Similarity=0.159 Sum_probs=36.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003913 339 LRVCAKEGDVEDAEKTWLRLLESDN-GIPTPAFVYKMEAYAKIG--------EFMKSLEIFREMQERLGSASVPAYHKII 409 (787)
Q Consensus 339 i~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~t~~~li 409 (787)
|..|...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+|+.|...+++|+..||+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444555555555555555555 445555555544444321 2233444555555555555555555555
Q ss_pred HHHH
Q 003913 410 ELLC 413 (787)
Q Consensus 410 ~~~~ 413 (787)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0037 Score=52.03 Aligned_cols=78 Identities=13% Similarity=0.205 Sum_probs=49.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003913 372 YKMEAYAKIGEFMKSLEIFREMQERLG-SASVPAYHKIIELLCKAE--------ETELTESLMKEFVETGMKPLMPSYIN 442 (787)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g--------~~~~A~~l~~~m~~~g~~p~~~t~~~ 442 (787)
..|.-+...+++.....+|+.++..|+ .|++.+|+.++.+.++.. ++-+.+.+|+.|+..+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345555556777777777777777777 777777777777666543 23344556666666666666666666
Q ss_pred HHHHHHh
Q 003913 443 LTNMYLN 449 (787)
Q Consensus 443 li~~~~~ 449 (787)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 6655543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0036 Score=54.62 Aligned_cols=97 Identities=15% Similarity=0.061 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CCCHHHHHHHH
Q 003913 439 SYINLTNMYLNLGMHDRLHLAFSECLEKCRPN---RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTI-GVNTRSCNIIL 514 (787)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-~p~~~t~~~li 514 (787)
++..+...+.+.|++++|...|..+.+..+.+ ...+..+...+.+.|++++|...|+.+.....- +....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 44555556666666666666666665422221 345555666677777777777777766654200 01134566666
Q ss_pred HHHHcCCCHHHHHHHHHHHHH
Q 003913 515 SAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.++.+.|+.++|...++++.+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHH
Confidence 666777777777777777765
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0027 Score=67.45 Aligned_cols=120 Identities=15% Similarity=0.179 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHH
Q 003913 400 ASVPAYHKIIELLCKAEETELTESLMKEFVET--GMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGI 476 (787)
Q Consensus 400 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~~~~~ 476 (787)
.+.+....+++.+....+++.+..++.+.+.. ....-..|..++|+.|.+.|..+.+..++..=.. |+-||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34445555555555555666666666655543 1112233445666666666666666666665555 66666666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcC
Q 003913 477 YLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSS 520 (787)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~ 520 (787)
|++.+.+.|++..|.++...|..++ .-.+..|+..-+.+|.+-
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe-~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQE-EFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHHh
Confidence 6666666666666666666666555 334555555555544443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.52 Score=53.50 Aligned_cols=384 Identities=13% Similarity=0.095 Sum_probs=229.1
Q ss_pred CcchHHHHH---HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHH
Q 003913 144 QEDGTYLAV---HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHI 220 (787)
Q Consensus 144 p~~~t~~~~---~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~ 220 (787)
|+.....++ ...|.|+.++|..+++.....+ ..|..+...+-.+|-..++.++|..++++.... .|+..-...
T Consensus 40 Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~ 115 (932)
T KOG2053|consen 40 PNALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYH 115 (932)
T ss_pred CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHH
Confidence 555544444 6779999999999988887765 448899999999999999999999999999876 577777777
Q ss_pred HHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCC----hhhHHHHHHHHHHHHHcCCccCHH
Q 003913 221 LIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLS----KYYLQQAEFIFHNLLTSGLEIQKD 296 (787)
Q Consensus 221 li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~ 296 (787)
+..+|+ |.+.+.+-.+.=-+|-+ .+.-+.+.|-++++.......... .--+.-|.+.++.+++.+- +-..
T Consensus 116 lFmayv---R~~~yk~qQkaa~~LyK--~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g-k~~s 189 (932)
T KOG2053|consen 116 LFMAYV---REKSYKKQQKAALQLYK--NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKG-KIES 189 (932)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHH--hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC-ccch
Confidence 888888 77877765554444444 245566777777776665432111 1234567778888876651 2122
Q ss_pred HHHHHHHHhhhccCCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003913 297 IYSGLIWLHSYQDNIDKERISLLKK-EMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKME 375 (787)
Q Consensus 297 ~~~~li~~~~~~~~g~~~~a~~l~~-~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 375 (787)
.-...+........|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..++-.++..+|.. . |...++
T Consensus 190 ~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D--d--y~~~~~ 265 (932)
T KOG2053|consen 190 EAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND--D--YKIYTD 265 (932)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc--c--hHHHHH
Confidence 3333333456677888999999984 3333323335555567788888999999999999999998853 2 433333
Q ss_pred HHHH----------------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---hcCChHHHHHHHHHHHHcCCCC-
Q 003913 376 AYAK----------------IGEFMKSLEIFREMQERLGSASVPAYHKIIELLC---KAEETELTESLMKEFVETGMKP- 435 (787)
Q Consensus 376 ~~~~----------------~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~---~~g~~~~A~~l~~~m~~~g~~p- 435 (787)
.+++ .+..+...+...+-..... .-.|-+-+.+.. ..|+.+++...|-+- -|-+|
T Consensus 266 sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~---Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k--fg~kpc 340 (932)
T KOG2053|consen 266 SVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKS---RGPYLARLELDKRYKLIGDSEEMLSYYFKK--FGDKPC 340 (932)
T ss_pred HHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccc---cCcHHHHHHHHHHhcccCChHHHHHHHHHH--hCCCcH
Confidence 2222 2223333333332222111 112222222222 335555543332211 11111
Q ss_pred -----------------------------CHH-------HHHHHHHHHHhcCC-----HHHHHHHHHHHH----hc----
Q 003913 436 -----------------------------LMP-------SYINLTNMYLNLGM-----HDRLHLAFSECL----EK---- 466 (787)
Q Consensus 436 -----------------------------~~~-------t~~~li~~~~~~g~-----~~~a~~~~~~m~----~~---- 466 (787)
+.. .+...+..-.-.|. -+.-...+.++. .|
T Consensus 341 c~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~ 420 (932)
T KOG2053|consen 341 CAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLS 420 (932)
T ss_pred hHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcccccc
Confidence 100 01222222222221 112222222221 12
Q ss_pred --CCCCH---------HHHHHHHHHHHhcCCHH---HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003913 467 --CRPNR---------TIYGIYLESLKNAGNIE---KAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDL 532 (787)
Q Consensus 467 --~~p~~---------~~~~~li~~~~~~g~~~---~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 532 (787)
+-|.. .+-+.|++.+-+.++.. +|+-+++.-.... +-|..+--.+|+.|+--|-...|.++|..
T Consensus 421 K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s--~hnf~~KLlLiriY~~lGa~p~a~~~y~t 498 (932)
T KOG2053|consen 421 KDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS--PHNFQTKLLLIRIYSYLGAFPDAYELYKT 498 (932)
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC--CccHHHHHHHHHHHHHhcCChhHHHHHHh
Confidence 12221 24578888998888654 6777777777664 45677777889999999999999999999
Q ss_pred HHHcCCccCHHHHHHHHH
Q 003913 533 MCLKKYEIESAWMEKLDY 550 (787)
Q Consensus 533 m~~~g~~~~p~~~~~l~~ 550 (787)
|--+. +.-|++.++..
T Consensus 499 LdIK~--IQ~DTlgh~~~ 514 (932)
T KOG2053|consen 499 LDIKN--IQTDTLGHLIF 514 (932)
T ss_pred cchHH--hhhccchHHHH
Confidence 87655 44455554433
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0029 Score=59.46 Aligned_cols=105 Identities=15% Similarity=0.218 Sum_probs=64.4
Q ss_pred CCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 003913 329 EEGKEVLLSVLRVCAK-----EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVP 403 (787)
Q Consensus 329 ~p~~~t~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 403 (787)
.-|..+|..++..|.+ .|.++-....+..|.+-|+.-|..+|+.|++.+=+ |++- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 3467777777777764 47788888888888888888888888888887765 2221 111111111
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003913 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM 452 (787)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 452 (787)
.-| ..+.+-|++++++|...|+-||..|+..|++.+++.+.
T Consensus 113 ------~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 ------MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ------ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 001 12334556666666666666666666666666665553
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.01 Score=51.78 Aligned_cols=95 Identities=17% Similarity=0.078 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHH
Q 003913 406 HKIIELLCKAEETELTESLMKEFVETGM--KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCR---PNRTIYGIYLES 480 (787)
Q Consensus 406 ~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~---p~~~~~~~li~~ 480 (787)
..+...+.+.|++++|...+..+.+..- ......+..+..++.+.|+++.|...|+.+....+ ....++..+...
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344444555555555555555544210 00123444455555555555555555555554211 123445555566
Q ss_pred HHhcCCHHHHHHHHHHhhhC
Q 003913 481 LKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 481 ~~~~g~~~~A~~l~~~m~~~ 500 (787)
+.+.|+.++|...++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 66666666666666666665
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0053 Score=57.74 Aligned_cols=103 Identities=8% Similarity=0.114 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 003913 365 IPTPAFVYKMEAYAKI-----GEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPS 439 (787)
Q Consensus 365 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 439 (787)
.+..+|..+|+.|.+. |.++=....+..|.+-|+.-|..+|+.||..+=+ |.+- -..+|+.+--.
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~h-------- 114 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMH-------- 114 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhcc--------
Confidence 3677888888888764 6777777788888888888888888888887765 2221 11222222210
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCC
Q 003913 440 YINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYLESLKNAGN 486 (787)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~~~~~li~~~~~~g~ 486 (787)
--.+-+-|++++++|.. |+-||..++..|++.+++.+.
T Consensus 115 ---------yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 ---------YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ---------CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11345679999999998 999999999999999988764
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.018 Score=54.27 Aligned_cols=85 Identities=12% Similarity=0.101 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS--VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM 446 (787)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 446 (787)
.+..+...|...|++++|...|++.......++ ...+..+...+.+.|++++|...+.+..+.. +-+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344455555555555555555555544322111 2344444555555555555555555544421 1123333444444
Q ss_pred HHhcCCHH
Q 003913 447 YLNLGMHD 454 (787)
Q Consensus 447 ~~~~g~~~ 454 (787)
|...|+..
T Consensus 116 ~~~~g~~~ 123 (172)
T PRK02603 116 YHKRGEKA 123 (172)
T ss_pred HHHcCChH
Confidence 44444433
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0016 Score=63.95 Aligned_cols=93 Identities=16% Similarity=0.130 Sum_probs=58.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHH
Q 003913 445 NMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFV 524 (787)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 524 (787)
+-..+.+++.+|+..|.+.++-.+.|.+-|..-..+|++.|.++.|++-.+..+..+ +-...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCcHH
Confidence 345566666666666666666555666666666666666666666666666666643 223456666666666666666
Q ss_pred HHHHHHHHHHHcCCccCHH
Q 003913 525 KAEKIYDLMCLKKYEIESA 543 (787)
Q Consensus 525 ~A~~~~~~m~~~g~~~~p~ 543 (787)
+|++.|++.++ ++|+
T Consensus 167 ~A~~aykKaLe----ldP~ 181 (304)
T KOG0553|consen 167 EAIEAYKKALE----LDPD 181 (304)
T ss_pred HHHHHHHhhhc----cCCC
Confidence 66666665554 5555
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.011 Score=62.78 Aligned_cols=87 Identities=9% Similarity=-0.031 Sum_probs=45.6
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 003913 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKA 526 (787)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A 526 (787)
+...|++++|+..|.+.++..+.+...|..+..+|.+.|++++|+..+++++... +.+...|..+..+|...|++++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCCHHHH
Confidence 3444555555555555554444445555555555555555555555555555543 23444555555555555555555
Q ss_pred HHHHHHHHH
Q 003913 527 EKIYDLMCL 535 (787)
Q Consensus 527 ~~~~~~m~~ 535 (787)
+..|++.++
T Consensus 90 ~~~~~~al~ 98 (356)
T PLN03088 90 KAALEKGAS 98 (356)
T ss_pred HHHHHHHHH
Confidence 555555554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0048 Score=65.53 Aligned_cols=102 Identities=9% Similarity=0.004 Sum_probs=87.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 003913 408 IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI 487 (787)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~ 487 (787)
-...+...|++++|..+|++.++.. +-+...|..+..+|.+.|++++|...++.+++..+.+...|..+..+|...|++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 3566778899999999999999854 446788999999999999999999999999987677889999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHH
Q 003913 488 EKAEEIFNHMHSDQTIGVNTRSCNII 513 (787)
Q Consensus 488 ~~A~~l~~~m~~~~~~~p~~~t~~~l 513 (787)
++|+..|++..+.+ |+.......
T Consensus 87 ~eA~~~~~~al~l~---P~~~~~~~~ 109 (356)
T PLN03088 87 QTAKAALEKGASLA---PGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHHhC---CCCHHHHHH
Confidence 99999999999864 554443333
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.021 Score=51.45 Aligned_cols=97 Identities=7% Similarity=-0.103 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 003913 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAY 517 (787)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~ 517 (787)
...-.+..-+...|++++|..+|+.+..-.+-+..-|-.|.-++-..|++++|+..|....... +-|...+-.+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHHHH
Confidence 3445556667788999999999998877556677888888888888999999999999988875 46788888999999
Q ss_pred HcCCCHHHHHHHHHHHHHc
Q 003913 518 LSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~~ 536 (787)
...|+.+.|.+.|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988763
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0013 Score=53.39 Aligned_cols=80 Identities=18% Similarity=0.159 Sum_probs=46.1
Q ss_pred cCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 003913 450 LGMHDRLHLAFSECLEKCR--PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAE 527 (787)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~ 527 (787)
.|+++.|+.+++++.+..+ ++...+-.+..+|.+.|++++|..++++ .+.+ +.+......+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3566666666666665222 2344455567777777777777777766 2222 123344444466677777777777
Q ss_pred HHHHH
Q 003913 528 KIYDL 532 (787)
Q Consensus 528 ~~~~~ 532 (787)
++|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77664
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0022 Score=52.13 Aligned_cols=80 Identities=18% Similarity=0.179 Sum_probs=32.9
Q ss_pred CChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003913 416 EETELTESLMKEFVETGM-KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIF 494 (787)
Q Consensus 416 g~~~~A~~l~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 494 (787)
|+++.|+.+++++.+..- .++...+..+..+|.+.|++++|..+++. .+..+.+....-.+..+|.+.|++++|+++|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 444444444444444321 11222333344455555555555555544 2111122233333345555555555555555
Q ss_pred HH
Q 003913 495 NH 496 (787)
Q Consensus 495 ~~ 496 (787)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 43
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.048 Score=60.62 Aligned_cols=66 Identities=17% Similarity=0.099 Sum_probs=53.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 467 CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 467 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.+.+..+|.++.-.+...|++++|...+++....+ |+...|..+...|...|+.++|.+.+++..+
T Consensus 416 ~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~---ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 416 LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE---MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34456777777766777788999999999888864 6888888888888889999999988888875
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.016 Score=57.26 Aligned_cols=100 Identities=17% Similarity=0.095 Sum_probs=84.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH
Q 003913 409 IELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIE 488 (787)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~ 488 (787)
..-+.+.+++++|+..|.+.++.. +-|.+-|..=..+|++.|.++.|++-.+..+.-.+-...+|..|..+|...|+++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 355678899999999999999843 3467888889999999999999999888887655556789999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHH
Q 003913 489 KAEEIFNHMHSDQTIGVNTRSCNI 512 (787)
Q Consensus 489 ~A~~l~~~m~~~~~~~p~~~t~~~ 512 (787)
+|++.|++..+. .|+-.+|-.
T Consensus 167 ~A~~aykKaLel---dP~Ne~~K~ 187 (304)
T KOG0553|consen 167 EAIEAYKKALEL---DPDNESYKS 187 (304)
T ss_pred HHHHHHHhhhcc---CCCcHHHHH
Confidence 999999999985 577666643
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.023 Score=58.13 Aligned_cols=130 Identities=8% Similarity=0.160 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003913 369 AFVYKMEAYAKIGEFMKSLEIFREMQERL-GSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMY 447 (787)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 447 (787)
+|..++...-+.+.++.|..+|.+..+.+ +..++....+++. +...++.+.|..+|+...+. +..+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555666666666666666666665332 1222222222222 22234455566666666653 344555566666666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 448 LNLGMHDRLHLAFSECLEKCRPNR---TIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 448 ~~~g~~~~a~~~~~~m~~~~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
.+.++.+.|..+|+..+..+.++. ..|...++-=.+.|+++.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666677777777776665433333 57777888778888888888888888775
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0035 Score=48.61 Aligned_cols=64 Identities=19% Similarity=0.155 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Q 003913 470 NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSG-DFVKAEKIYDLMCL 535 (787)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g-~~~~A~~~~~~m~~ 535 (787)
+..+|..+...+.+.|++++|+..|++.++.. +-+...|..+..+|.+.| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34566777777777777777777777777764 445667777777777777 57777777777665
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.05 Score=47.18 Aligned_cols=90 Identities=20% Similarity=0.148 Sum_probs=47.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhc
Q 003913 410 ELLCKAEETELTESLMKEFVETGMKPL--MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP---NRTIYGIYLESLKNA 484 (787)
Q Consensus 410 ~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p---~~~~~~~li~~~~~~ 484 (787)
.++-..|+.++|..+|++....|+... ...+..+...|...|++++|..+++......+. +......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344455666666666666665554433 234445555556666666666666655542222 222223333455556
Q ss_pred CCHHHHHHHHHHhhh
Q 003913 485 GNIEKAEEIFNHMHS 499 (787)
Q Consensus 485 g~~~~A~~l~~~m~~ 499 (787)
|+.++|++.+-....
T Consensus 89 gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 89 GRPKEALEWLLEALA 103 (120)
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666655443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.044 Score=51.58 Aligned_cols=86 Identities=14% Similarity=0.052 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 003913 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPL--MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESL 481 (787)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~ 481 (787)
.|..+...+...|++++|...|++..+....+. ...+..+...|.+.|++++|...+.+..+..+.+...+..+...|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344555555555566666655555554321111 234455555555555555555555555443333444444444455
Q ss_pred HhcCCHHH
Q 003913 482 KNAGNIEK 489 (787)
Q Consensus 482 ~~~g~~~~ 489 (787)
...|+...
T Consensus 117 ~~~g~~~~ 124 (172)
T PRK02603 117 HKRGEKAE 124 (172)
T ss_pred HHcCChHh
Confidence 55444333
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0055 Score=47.31 Aligned_cols=62 Identities=13% Similarity=0.192 Sum_probs=40.6
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHH
Q 003913 449 NLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNII 513 (787)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~l 513 (787)
+.|++++|.+.|+.+....+-+...+..+..+|.+.|++++|.++++++.... |+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~---~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD---PDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG---TTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCHHHHHHH
Confidence 45667777777777666556677777777777777777777777777777653 554444443
|
... |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.031 Score=50.34 Aligned_cols=88 Identities=9% Similarity=-0.050 Sum_probs=41.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 003913 411 LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKA 490 (787)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A 490 (787)
-+...|++++|..+|+.+.... .-+..-|..|.-+|-..|++++|+..|.....-.+-|+..+-.+..+|...|+.+.|
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHH
Confidence 3444455555555555444422 122333444444444445555555555554442234444555555555555555555
Q ss_pred HHHHHHhhh
Q 003913 491 EEIFNHMHS 499 (787)
Q Consensus 491 ~~l~~~m~~ 499 (787)
.+.|+..+.
T Consensus 123 ~~aF~~Ai~ 131 (157)
T PRK15363 123 IKALKAVVR 131 (157)
T ss_pred HHHHHHHHH
Confidence 555554443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.23 Score=51.01 Aligned_cols=167 Identities=17% Similarity=0.210 Sum_probs=95.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003913 338 VLRVCAKEGDVEDAEKTWLRLLESDNGIP-----TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELL 412 (787)
Q Consensus 338 li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 412 (787)
....|-..|++++|.+.|.+..+.....+ ...|.....+|-+. ++++|.+.++ ..+..|
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~---------------~A~~~y 104 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYE---------------KAIEIY 104 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHH---------------HHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHH---------------HHHHHH
Confidence 34456677888887777765533210000 11122222232222 4444444443 344556
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh--cCCCC----HHHHHHHHHHHHhcC
Q 003913 413 CKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL-GMHDRLHLAFSECLE--KCRPN----RTIYGIYLESLKNAG 485 (787)
Q Consensus 413 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~-g~~~~a~~~~~~m~~--~~~p~----~~~~~~li~~~~~~g 485 (787)
...|++..|-.++.++- ..|... |+++.|.+.|.+..+ ..... ..++..+...+.+.|
T Consensus 105 ~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 105 REAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT
T ss_pred HhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC
Confidence 77777777766555543 455555 788888888888765 11112 245667788899999
Q ss_pred CHHHHHHHHHHhhhCCC----CCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 486 NIEKAEEIFNHMHSDQT----IGVNTR-SCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 486 ~~~~A~~l~~~m~~~~~----~~p~~~-t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
++++|.++|++...... .+.+.. .|...+-.+...||...|.+.|++...
T Consensus 170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999876431 122232 334445567778999999999999885
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0056 Score=46.79 Aligned_cols=57 Identities=14% Similarity=0.192 Sum_probs=36.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 477 YLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+...+.+.|++++|.+.|++..+.. +-+...|..+...+.+.|++++|..+|+++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666677777777777777664 33556666666777777777777777777665
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.043 Score=51.44 Aligned_cols=94 Identities=15% Similarity=-0.005 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-C-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHH
Q 003913 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKC-R-P-NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNII 513 (787)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~-~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~l 513 (787)
...|..+...+...|++++|...|....... . + ...+|..+...|...|++++|+..+++..... +....++..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH
Confidence 4455666666677777777777777776521 1 1 23467777778888888888888888777653 3345566666
Q ss_pred HHHHH-------cCCCHHHHHHHHHH
Q 003913 514 LSAYL-------SSGDFVKAEKIYDL 532 (787)
Q Consensus 514 i~~~~-------~~g~~~~A~~~~~~ 532 (787)
...+. ..|++++|...+++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 66666 67777655555544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.036 Score=51.95 Aligned_cols=78 Identities=12% Similarity=-0.059 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003913 405 YHKIIELLCKAEETELTESLMKEFVETGMKP--LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLK 482 (787)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~ 482 (787)
|..+...+...|++++|...|++.......+ ...++..+...|...|++++|...++...+..+....+++.+...|.
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 3344444444455555555555444321111 12345555555555555555555555555433333444555554444
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0092 Score=45.56 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=45.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 443 LTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 443 li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
+...+.+.|++++|...|+.+++..+-+...|..+...+.+.|++++|...|+++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45567778888888888888887666677888888888888888888888888887753
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.28 Score=50.34 Aligned_cols=240 Identities=17% Similarity=0.237 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHH
Q 003913 236 EACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKER 315 (787)
Q Consensus 236 ~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~ 315 (787)
+|.+++.+..+. +++....| .++ .... .++++|..+|++.- ..|...+++++
T Consensus 2 ~a~~l~~~Aek~--lk~~~~~~-~~f---~~~~-----~~~e~Aa~~y~~Aa-----------------~~fk~~~~~~~ 53 (282)
T PF14938_consen 2 EAEELIKEAEKK--LKKSSGFF-SFF---GSKK-----PDYEEAADLYEKAA-----------------NCFKLAKDWEK 53 (282)
T ss_dssp HHHHHHHHHHHH--CS---TCC-CHH-----SC-----HHHHHHHHHHHHHH-----------------HHHHHTT-CHH
T ss_pred CHHHHHHHHHHH--hccccchh-hhc---CCCC-----CCHHHHHHHHHHHH-----------------HHHHHHhccch
Confidence 566777777664 44432222 111 2211 38889988888774 45556677888
Q ss_pred HHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 003913 316 ISLLKKEMQQAGFEEG-----KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIF 390 (787)
Q Consensus 316 a~~l~~~m~~~g~~p~-----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 390 (787)
|.+.|.+....-...+ ...|.....+|.+ +++++|.+. |...+..|...|++..|-+.+
T Consensus 54 A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~---------------~~~A~~~y~~~G~~~~aA~~~ 117 (282)
T PF14938_consen 54 AAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIEC---------------YEKAIEIYREAGRFSQAAKCL 117 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHH---------------HHHHHHHHHHCT-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHH---------------HHHHHHHHHhcCcHHHHHHHH
Confidence 8777765533211000 1112222222222 244444433 444567788888888887776
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003913 391 REMQERLGSASVPAYHKIIELLCKA-EETELTESLMKEFVE----TGMKPL--MPSYINLTNMYLNLGMHDRLHLAFSEC 463 (787)
Q Consensus 391 ~~m~~~g~~p~~~t~~~li~~~~~~-g~~~~A~~l~~~m~~----~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m 463 (787)
.++-+ .|-.. |++++|.+.|++..+ .| .+. ..++..+...+.+.|++++|.++|+++
T Consensus 118 ~~lA~---------------~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~ 181 (282)
T PF14938_consen 118 KELAE---------------IYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEV 181 (282)
T ss_dssp HHHHH---------------HHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHH---------------HHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 65533 34444 677888887777665 22 111 345667778888899999999999888
Q ss_pred HhcC------CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCC--HHHHHHHHHHHHc--CCCHHHHHHHHH
Q 003913 464 LEKC------RPNRT-IYGIYLESLKNAGNIEKAEEIFNHMHSDQ-TIGVN--TRSCNIILSAYLS--SGDFVKAEKIYD 531 (787)
Q Consensus 464 ~~~~------~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~~p~--~~t~~~li~~~~~--~g~~~~A~~~~~ 531 (787)
.... +.++. .|-..+-.+...|+...|.+.|++..... .+..+ ......||.+|-. ...+.+|+.-|+
T Consensus 182 ~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 182 AKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYD 261 (282)
T ss_dssp HHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHT
T ss_pred HHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Confidence 7521 11222 23333445666789999999999887652 12222 3456667777754 234677777777
Q ss_pred HHHH
Q 003913 532 LMCL 535 (787)
Q Consensus 532 ~m~~ 535 (787)
.+.+
T Consensus 262 ~~~~ 265 (282)
T PF14938_consen 262 SISR 265 (282)
T ss_dssp TSS-
T ss_pred ccCc
Confidence 6664
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.19 Score=55.88 Aligned_cols=142 Identities=11% Similarity=0.052 Sum_probs=89.2
Q ss_pred CCCCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc--------CChHHHHHHHHHH
Q 003913 363 NGIPTPAFVYKMEAYAKIG-----EFMKSLEIFREMQERLGSAS-VPAYHKIIELLCKA--------EETELTESLMKEF 428 (787)
Q Consensus 363 ~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~--------g~~~~A~~l~~~m 428 (787)
...+...|...+.+..... ....|..+|++..+. .|+ ...|..+..++... ..+..+.+...+.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3345666666666544322 245667777766654 333 23333332222221 1123333444433
Q ss_pred HHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH
Q 003913 429 VET-GMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT 507 (787)
Q Consensus 429 ~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~ 507 (787)
... ....+..+|..+.-.+...|++++|...+++.++. .|+...|..+...|...|+.++|.+.+++....+ |..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L-~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~---P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL-EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR---PGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC
Confidence 332 23345577877777777789999999999998873 3588899999999999999999999999998865 554
Q ss_pred HHH
Q 003913 508 RSC 510 (787)
Q Consensus 508 ~t~ 510 (787)
.||
T Consensus 487 pt~ 489 (517)
T PRK10153 487 NTL 489 (517)
T ss_pred chH
Confidence 454
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.49 Score=47.14 Aligned_cols=57 Identities=9% Similarity=0.129 Sum_probs=35.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 003913 442 NLTNMYLNLGMHDRLHLAFSECLE---KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMH 498 (787)
Q Consensus 442 ~li~~~~~~g~~~~a~~~~~~m~~---~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 498 (787)
.+..-|.+.|.+..|..-++.+++ +.+........|+.+|...|..++|.++...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 445556666777777777777665 333344555666677777777777776665543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.016 Score=59.39 Aligned_cols=166 Identities=13% Similarity=0.048 Sum_probs=115.1
Q ss_pred CCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHhhhCCCCCCCHHHH-
Q 003913 435 PLMPSYINL-TNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLES--LKNAGNIEKAEEIFNHMHSDQTIGVNTRSC- 510 (787)
Q Consensus 435 p~~~t~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~- 510 (787)
|...++-.| ..++.-.|+.++|..+-..+++....+. +..++++ +--.++.+.|...|++.+..+ |+...-
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~--~al~vrg~~~yy~~~~~ka~~hf~qal~ld---pdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNA--EALYVRGLCLYYNDNADKAINHFQQALRLD---PDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchh--HHHHhcccccccccchHHHHHHHhhhhccC---hhhhhHH
Confidence 333444433 2345567888888887777665333333 3333333 334678888888888888765 554322
Q ss_pred ------------HHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHH
Q 003913 511 ------------NIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGL 578 (787)
Q Consensus 511 ------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 578 (787)
.-=.+-..++|++.+|.+.|.+.+. ++|+. ..+++..|..
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~----idP~n------------------------~~~naklY~n 292 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN----IDPSN------------------------KKTNAKLYGN 292 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc----CCccc------------------------cchhHHHHHH
Confidence 2223334688999999999988775 77763 2345778888
Q ss_pred HhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccccCCCC
Q 003913 579 LLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGND 633 (787)
Q Consensus 579 ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~ 633 (787)
...+..++|+..+|..-.. +.++|....++...++.|...++|++|.+-+.++.+
T Consensus 293 ra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 293 RALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred hHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888999999888877 788888888899999999999999999887754444
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.015 Score=44.98 Aligned_cols=64 Identities=20% Similarity=0.190 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhC
Q 003913 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG-NIEKAEEIFNHMHSD 500 (787)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~ 500 (787)
..+|..+...+...|++++|+..|.+.++-.+.+...|..+..+|.+.| ++++|++.|++..+.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4566666777777777777777777777655566777777777777777 577777777776653
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.35 E-value=1.1 Score=43.52 Aligned_cols=143 Identities=10% Similarity=0.036 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH---
Q 003913 368 PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLT--- 444 (787)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li--- 444 (787)
.+.++++..+.-.|.+.-...++++..++..+-+.+....|.+.-.+.|+.+.|...|++..+..-+.|..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 44556777777778888888888888887666677777888888888888888888888776643344444444433
Q ss_pred --HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHH
Q 003913 445 --NMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNII 513 (787)
Q Consensus 445 --~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~l 513 (787)
..|.-.+++..|...|.++....+.|+..-|.=.-.+.-.|+..+|++.++.|.... |...+-+++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~---P~~~l~es~ 325 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD---PRHYLHESV 325 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC---CccchhhhH
Confidence 345556778888888888877555666665554444444688889999999888863 555555443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=1.3 Score=44.09 Aligned_cols=180 Identities=11% Similarity=0.003 Sum_probs=105.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-
Q 003913 338 VLRVCAKEGDVEDAEKTWLRLLESDNGIPTPA--FVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCK- 414 (787)
Q Consensus 338 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~- 414 (787)
....+.+.|++++|.+.|+.+...-+...... .-.+..+|.+.+++++|...|++..+.-..-...-|.-.+.|.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 33344567777788777777777654332111 123566777778888888888777765322222233333444331
Q ss_pred -c---------------CC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 003913 415 -A---------------EE---TELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYG 475 (787)
Q Consensus 415 -~---------------g~---~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~ 475 (787)
. .+ ..+|...|+++++. -|+. .-..+|...+..+.... ...--
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~l---a~~e~ 179 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDRL---AKYEL 179 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHHH---HHHHH
Confidence 1 11 23455666666653 2332 22344444444333210 01112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 476 IYLESLKNAGNIEKAEEIFNHMHSDQT-IGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 476 ~li~~~~~~g~~~~A~~l~~~m~~~~~-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.+..-|.+.|.+..|..-|+.+.++-. .+........|+.+|...|..++|..+...+..
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 456778999999999999999998731 122345666888999999999999988776653
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.19 Score=43.52 Aligned_cols=87 Identities=17% Similarity=0.092 Sum_probs=39.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHH
Q 003913 375 EAYAKIGEFMKSLEIFREMQERLGSAS--VPAYHKIIELLCKAEETELTESLMKEFVETGMKPL----MPSYINLTNMYL 448 (787)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~li~~~~ 448 (787)
.++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++..... |+ ......+.-++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 344445555555555555555444332 1233334445555555555555555554421 21 111122223444
Q ss_pred hcCCHHHHHHHHHHH
Q 003913 449 NLGMHDRLHLAFSEC 463 (787)
Q Consensus 449 ~~g~~~~a~~~~~~m 463 (787)
..|+.++|...+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 555555555555443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.98 Score=41.53 Aligned_cols=125 Identities=10% Similarity=0.050 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCHHHHHHH
Q 003913 400 ASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKC--RPNRTIYGIY 477 (787)
Q Consensus 400 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~--~p~~~~~~~l 477 (787)
|++..--.|..++...|+..+|...|++...--..-|......+.++....++...|...++.+.+-. ...+.+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 44444445555555666666666666555543333455555555555555666666666555554410 1112223334
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 003913 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAE 527 (787)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~ 527 (787)
...|...|+..+|+.-|+...... |+...-.-....+.+.|+.++|.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~y---pg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYY---PGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhC---CCHHHHHHHHHHHHHhcchhHHH
Confidence 455556666666666666665542 33332222233344555444443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.9 Score=41.77 Aligned_cols=133 Identities=13% Similarity=0.071 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---CCCCHHHH
Q 003913 329 EEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERL---GSASVPAY 405 (787)
Q Consensus 329 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~ 405 (787)
.|++.--..|..+....|+..+|...|++...--+.-|....-.+..+....++...|...++.+-+.. -.||. .
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--H 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--h
Confidence 444444445555566666666666666655543333344445555555555566666666655554431 12222 2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003913 406 HKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE 465 (787)
Q Consensus 406 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 465 (787)
-.+...|...|...+|..-|+.... .-|+...-.-....+.+.|+.+++..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 2344555555555555555555554 234443333334444555555555444444433
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.018 Score=44.34 Aligned_cols=52 Identities=19% Similarity=0.354 Sum_probs=29.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003913 344 KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER 396 (787)
Q Consensus 344 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 396 (787)
+.|++++|.++|+.+.+..+. +...+..+..+|.+.|++++|..+++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445566666666666555433 4455555666666666666666666665544
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0012 Score=66.89 Aligned_cols=127 Identities=7% Similarity=-0.135 Sum_probs=81.4
Q ss_pred HHHHHHHhhhhhhccchhhcceeEE--EEEc------cCCcccHHHHHHHHHHchhhcCCCccccCCCCC------cceE
Q 003913 573 ENLIGLLLGGLCIESDEKRKRHMIR--FQFN------ENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDD------IPYK 638 (787)
Q Consensus 573 ~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~------p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~------~p~~ 638 (787)
-..|+.|.+.+...|+++.|+..++ +++. ...-.++..|++.|.-.|+++.|++.+...... ....
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 4578889999999999999988876 2221 122346888999999999999998887432211 1111
Q ss_pred EeeeccchHHHHHHhhccCcccccccch--hh---cCChhHHHHHhhcCCcccCCCcEEEEccCCHHHHHHHHHH
Q 003913 639 YSTISHPYFCFYADKFWPKGRLVIPKLI--HR---WLTPRALAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKT 708 (787)
Q Consensus 639 ~~t~~~~~~~~~~~g~~~~a~~~~~~mi--~~---gl~P~~lay~~m~~g~~~~~g~~~~~~~g~~~e~~~l~~~ 708 (787)
..+-.++...|..-..+++|+.++.+=+ .. ...-...+||++..++ +.-|.++.|+.+...
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~---------~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAF---------NALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH---------HhhhhHHHHHHHHHH
Confidence 1122234456666777788887655422 11 1334578899999994 444666777665544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.055 Score=49.27 Aligned_cols=71 Identities=15% Similarity=0.181 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----cCCccCHHH
Q 003913 472 TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL-----KKYEIESAW 544 (787)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~p~~ 544 (787)
.+...++..+...|++++|..+.+.+.... |-|...|..+|.+|...|+..+|.++|+++.+ -|+.|+|.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 455667777888889999999999888875 56788888899999999999999888888753 266666655
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.33 Score=48.46 Aligned_cols=99 Identities=6% Similarity=-0.003 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 003913 401 SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL---GMHDRLHLAFSECLEKCRPNRTIYGIY 477 (787)
Q Consensus 401 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~---g~~~~a~~~~~~m~~~~~p~~~~~~~l 477 (787)
|...|-.|..+|...|+...|..-|.+..+.- .+|...+..+..++... ....++..+|+++++..+-|+.+-..|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 44455555555555555555555555544421 22233333333332221 123344445555444444444444444
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhC
Q 003913 478 LESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
...+...|++.+|...|+.|.+.
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhc
Confidence 44555555555555555555544
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.32 Score=48.57 Aligned_cols=101 Identities=19% Similarity=0.207 Sum_probs=88.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCCCHHHH
Q 003913 434 KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG---NIEKAEEIFNHMHSDQTIGVNTRSC 510 (787)
Q Consensus 434 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~~~~~p~~~t~ 510 (787)
+-|...|-.|...|...|+.+.|...|....+--++|...+..+..++.... ...+|..+|+++...+ +-|+.+-
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D--~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD--PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC--CccHHHH
Confidence 5578999999999999999999999999999877788888888887776643 4678999999999986 5677777
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHc
Q 003913 511 NIILSAYLSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (787)
.-|..++...|++.+|...|+.|...
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 78888999999999999999999974
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.18 Score=50.78 Aligned_cols=97 Identities=14% Similarity=0.104 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CCCHHHHHHHH
Q 003913 439 SYINLTNMYLNLGMHDRLHLAFSECLEKCRPN---RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTI-GVNTRSCNIIL 514 (787)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-~p~~~t~~~li 514 (787)
.|...+..+.+.|++++|...|+.+++..+-+ ..++-.+...|...|++++|...|+.+.+...- +.....+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 34444444445566666666666666533222 245556667777777777777777777654200 01133444455
Q ss_pred HHHHcCCCHHHHHHHHHHHHH
Q 003913 515 SAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~ 535 (787)
..+...|+.++|.++|++.++
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 566677777777777777765
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.039 Score=43.90 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 473 IYGIYLESLKNAGNIEKAEEIFNHMHSD----QTIGVN-TRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
+|+.+...|...|++++|+..|++..+. |.-.|+ ..+++.+...|...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555555554421 101122 4456666666666666666666666554
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.65 E-value=1.1 Score=43.48 Aligned_cols=47 Identities=17% Similarity=0.084 Sum_probs=24.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH----HHHHHHHHHHHcCCCHHHH
Q 003913 477 YLESLKNAGNIEKAEEIFNHMHSDQTIGVNT----RSCNIILSAYLSSGDFVKA 526 (787)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~----~t~~~li~~~~~~g~~~~A 526 (787)
+..-|.+.|.+..|..-++.++++- |+. ...-.|+.+|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~y---p~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENY---PDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHhCChHHH
Confidence 3455666666666666666666652 332 2345555666666665533
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.63 Score=47.66 Aligned_cols=139 Identities=14% Similarity=0.183 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcC---CcCCCHHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCCC
Q 003913 196 FAKCRDIFDDIINQGRVPSEMTFHILIVAYLSA---PVQGCLDEACSIYNRMIQLGGY--QPRPSLHNSLFRALVSKPGG 270 (787)
Q Consensus 196 ~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~---~~~g~~~~A~~l~~~m~~~~g~--~pd~~t~~~ll~~~~~~~~~ 270 (787)
+.+...+++.|.+.|...+..+|-+........ .......+|..+|+.|++.+.+ .++.+.+..+|..-....
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~-- 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDV-- 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccH--
Confidence 455667888899999888877776643333210 0113467789999999987533 456677777776522211
Q ss_pred CChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCC--HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003913 271 LSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNID--KERISLLKKEMQQAGFEEGKEVLLSV 338 (787)
Q Consensus 271 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~--~~~a~~l~~~m~~~g~~p~~~t~~~l 338 (787)
.--.+.++.+|+.+.+.|+..+......--.+.......+ ..++.++++.+.+.|+++....|..+
T Consensus 156 --e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 --EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred --HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 1244677778888888787766554332111111111111 34677777788888777766665543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.93 Score=47.00 Aligned_cols=179 Identities=14% Similarity=0.074 Sum_probs=105.2
Q ss_pred CCHHHHHHHH-HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003913 330 EGKEVLLSVL-RVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAY--AKIGEFMKSLEIFREMQERLGSASVPAYH 406 (787)
Q Consensus 330 p~~~t~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 406 (787)
|.-.++..+- .++.-.|+.++|..+-...++... ...+...+++. --.++.+.|...|++-+.. .|+...-
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~s- 239 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKS- 239 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhH-
Confidence 3334444332 344567888888888777777652 23344444433 3457778888888877654 2333221
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHH
Q 003913 407 KIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE----KCRPNRTIYGIYLESLK 482 (787)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~~~p~~~~~~~li~~~~ 482 (787)
+..-.-.+.++.+.+.| +-..+.|++..|.+.|.+.+. ...++...|.....+..
T Consensus 240 ---------k~~~~~~k~le~~k~~g------------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~ 298 (486)
T KOG0550|consen 240 ---------KSASMMPKKLEVKKERG------------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI 298 (486)
T ss_pred ---------HhHhhhHHHHHHHHhhh------------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc
Confidence 11111223333444444 345677777777777777764 45667777777777788
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 003913 483 NAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKK 537 (787)
Q Consensus 483 ~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (787)
+.|+.++|+.-.++..+.+ +--...|..-..++...++|++|.+-|+...+..
T Consensus 299 rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 299 RLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred ccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8888888888888777653 0111222222334455677888888887776543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.55 E-value=4 Score=48.24 Aligned_cols=191 Identities=11% Similarity=0.016 Sum_probs=109.4
Q ss_pred hhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 003913 305 HSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFM 384 (787)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 384 (787)
-+...+.|+.+-+-+++++++. +++..-|. |+. ..++++.|..-+.++- ...|.-.++---+.|.+.
T Consensus 859 VAq~SqkDPkEyLP~L~el~~m--~~~~rkF~--ID~--~L~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~ 925 (1265)
T KOG1920|consen 859 VAQKSQKDPKEYLPFLNELKKM--ETLLRKFK--IDD--YLKRYEDALSHLSECG-------ETYFPECKNYIKKHGLYD 925 (1265)
T ss_pred HHHHhccChHHHHHHHHHHhhc--hhhhhhee--HHH--HHHHHHHHHHHHHHcC-------ccccHHHHHHHHhcccch
Confidence 4445556677777777766632 22222221 111 2356666665444332 123334444555677777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH----HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003913 385 KSLEIFREMQERLGSASVPAYHKII----ELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAF 460 (787)
Q Consensus 385 ~A~~~~~~m~~~g~~p~~~t~~~li----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 460 (787)
+|+.++. |+...+..+. .-+...+.+++|.-.|+..-+ .---+.+|-.+|+|.+|..+.
T Consensus 926 ~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a 988 (1265)
T KOG1920|consen 926 EALALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLA 988 (1265)
T ss_pred hhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHH
Confidence 7777653 4555544444 344455666766666554322 123456777788888888887
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 461 SECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 461 ~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
.++..+-.--..+-..|+.-+...++.-+|-++..+.... ..-.+..|++...|++|+++...-.
T Consensus 989 ~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 989 AQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 7765321112223367788888888888888888877654 1223455666777888887766544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.51 E-value=1.1 Score=43.31 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=26.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcCCHHHH
Q 003913 443 LTNMYLNLGMHDRLHLAFSECLEKCRPNR---TIYGIYLESLKNAGNIEKA 490 (787)
Q Consensus 443 li~~~~~~g~~~~a~~~~~~m~~~~~p~~---~~~~~li~~~~~~g~~~~A 490 (787)
+..-|.+.|.+..|..-++.+++..+-.. ...-.|+.+|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 45556666666666666666665433322 3345556666666666543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.98 Score=39.03 Aligned_cols=67 Identities=19% Similarity=0.325 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 003913 470 NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKY 538 (787)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 538 (787)
+....+..++.+.++|+-+.-.++++++.+.+ .+++.....+..||.+.|+..+|-+++.+..++|+
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~--~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE--EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445556777777788777777777776544 46777777777788888888888888888777764
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.22 Score=50.08 Aligned_cols=86 Identities=13% Similarity=0.148 Sum_probs=45.4
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhcC
Q 003913 413 CKAEETELTESLMKEFVETGMKPL----MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP---NRTIYGIYLESLKNAG 485 (787)
Q Consensus 413 ~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p---~~~~~~~li~~~~~~g 485 (787)
.+.|++++|...|+.+++. .|+ ..++..+..+|...|++++|...|..+.+..+. ....+-.+...|...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 3445555555555555542 122 234455555555666666666666665542222 2334444455555666
Q ss_pred CHHHHHHHHHHhhhC
Q 003913 486 NIEKAEEIFNHMHSD 500 (787)
Q Consensus 486 ~~~~A~~l~~~m~~~ 500 (787)
+.++|..+|++.++.
T Consensus 232 ~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 232 DTAKAKAVYQQVIKK 246 (263)
T ss_pred CHHHHHHHHHHHHHH
Confidence 666666666666665
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.085 Score=41.21 Aligned_cols=54 Identities=17% Similarity=0.082 Sum_probs=24.3
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
|.+.+++++|.++++.++.-.+.+...|......|.+.|++++|.+.|+...+.
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344444444444444444433334444444444444444444444444444443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.23 Score=43.47 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHH
Q 003913 468 RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILS 515 (787)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~ 515 (787)
.|+..+..+++.+|+..|++..|+++.+...+...++-+..+|..|+.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 455555555555555555555555555555444334444555555554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.30 E-value=3 Score=40.37 Aligned_cols=200 Identities=15% Similarity=0.061 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003913 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLES-DNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410 (787)
Q Consensus 332 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (787)
...+......+...+.+..+...+...... ........+..+...+...+.+..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 566777777788888888888887777652 222345666667777778888888888888887653332 122222333
Q ss_pred -HHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhcCC
Q 003913 411 -LLCKAEETELTESLMKEFVETGM--KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP-NRTIYGIYLESLKNAGN 486 (787)
Q Consensus 411 -~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p-~~~~~~~li~~~~~~g~ 486 (787)
.+...|+.+.|...+.+.....- ......+......+...++.+.+...+....+..+. ....+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 68888899999998888855221 123445555555577888999999999988875555 57888888888888999
Q ss_pred HHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 487 IEKAEEIFNHMHSDQTIGVN-TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 487 ~~~A~~l~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
++.|...+....... |+ ...+..+...+...|..+++...+.+..+
T Consensus 218 ~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELD---PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhC---cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999988863 33 45556666666677778888888888876
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.9 Score=49.99 Aligned_cols=237 Identities=14% Similarity=0.110 Sum_probs=132.9
Q ss_pred CCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCH--------HHHHHHHHHHHcCCCCCChhhHHHHHHHH
Q 003913 212 VPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRP--------SLHNSLFRALVSKPGGLSKYYLQQAEFIF 283 (787)
Q Consensus 212 ~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~--------~t~~~ll~~~~~~~~~~~~g~~~~A~~~~ 283 (787)
.|-...|..+..... +.-.++-|+..|-+...-.|++.-- ..-.+-+.++. |.+++|++++
T Consensus 689 nPHprLWrllAe~Al---~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~--------g~feeaek~y 757 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYAL---FKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFY--------GEFEEAEKLY 757 (1189)
T ss_pred CCchHHHHHHHHHHH---HHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhh--------cchhHhhhhh
Confidence 366778887777666 5677788888887765543442110 01112233333 5899999999
Q ss_pred HHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003913 284 HNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG----KEVLLSVLRVCAKEGDVEDAEKTWLRLL 359 (787)
Q Consensus 284 ~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~ 359 (787)
-+|-++++.. ..+.+.|||-++.++++. .|-..| ...++.+..-++....|++|.+.+..-.
T Consensus 758 ld~drrDLAi-----------elr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 758 LDADRRDLAI-----------ELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred hccchhhhhH-----------HHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8887766531 445566777776666542 111111 3456777777777777777777765432
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 003913 360 ESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPS 439 (787)
Q Consensus 360 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 439 (787)
.. ...+.+|.+...+++-..+-+.+.+ |....-.|...+.+.|.-++|.+.|-+. + .|
T Consensus 824 ~~---------e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p---- 881 (1189)
T KOG2041|consen 824 DT---------ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP---- 881 (1189)
T ss_pred ch---------HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc----
Confidence 11 1245555555455444444333332 4445556667777777777776665432 1 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 440 YINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIY--------------GIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~--------------~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
-..++.|...+++.+|.++-+... -|.+.+. ---|..+-++|+.-+|-+++.+|.+
T Consensus 882 -kaAv~tCv~LnQW~~avelaq~~~---l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 882 -KAAVHTCVELNQWGEAVELAQRFQ---LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhcc---chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 133455666666666666554422 1222111 1124556667777677777777654
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.20 E-value=1.4 Score=47.08 Aligned_cols=165 Identities=10% Similarity=0.047 Sum_probs=94.6
Q ss_pred HHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHH
Q 003913 218 FHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDI 297 (787)
Q Consensus 218 y~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 297 (787)
+.+|-.++ +..+.+.-+++=++..+ +.||..+.-+++..=.. ..+.+|++++++.++.|-. .
T Consensus 172 q~IMq~AW----RERnp~aRIkaA~eALe---i~pdCAdAYILLAEEeA-------~Ti~Eae~l~rqAvkAgE~----~ 233 (539)
T PF04184_consen 172 QEIMQKAW----RERNPQARIKAAKEALE---INPDCADAYILLAEEEA-------STIVEAEELLRQAVKAGEA----S 233 (539)
T ss_pred HHHHHHHH----hcCCHHHHHHHHHHHHH---hhhhhhHHHhhcccccc-------cCHHHHHHHHHHHHHHHHH----h
Confidence 44444455 46777777777777775 56877766555543111 2588899999888765521 1
Q ss_pred HHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 003913 298 YSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGI-PTPAFVYKMEA 376 (787)
Q Consensus 298 ~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~ 376 (787)
+... ...+..| ..++.+..+...|-..+-.-+..++-+.|+.++|.+.+++|.+..... ...+...|+.+
T Consensus 234 lg~s---~~~~~~g------~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~ 304 (539)
T PF04184_consen 234 LGKS---QFLQHHG------HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEA 304 (539)
T ss_pred hchh---hhhhccc------chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHH
Confidence 1100 0001111 111112222222223333455666668899999999999988754322 23355668999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCC-CCHHHHHHHH
Q 003913 377 YAKIGEFMKSLEIFREMQERLGS-ASVPAYHKII 409 (787)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~li 409 (787)
+...+.+.++..++.+-.+...+ --...|++.+
T Consensus 305 LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 305 LLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 99999999999998887543221 1234566544
|
The molecular function of this protein is uncertain. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.12 Score=40.24 Aligned_cols=57 Identities=9% Similarity=-0.032 Sum_probs=51.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 003913 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (787)
-..|.+.+++++|.++++.+...+ |.+...|......+.+.|++++|.+.|+...+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 357889999999999999999985 667888999999999999999999999999973
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.51 Score=45.75 Aligned_cols=142 Identities=8% Similarity=0.025 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH---
Q 003913 333 EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKII--- 409 (787)
Q Consensus 333 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li--- 409 (787)
.+.++++..+.-.|.+.-....+.++++...+.++.....|++.-.+.|+.+.|...|++..+..-+.|..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34556666666777777777778888877766677777778888888888888888888776554444444444443
Q ss_pred --HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 003913 410 --ELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGI 476 (787)
Q Consensus 410 --~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~ 476 (787)
..|.-.+++..|...+.+..... .-|+...|.-.-+..-.|+..+|.+..+.|... .|...+-++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~-~P~~~l~es 324 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ-DPRHYLHES 324 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc-CCccchhhh
Confidence 33445566777777777776644 335555555554555567888888888888763 233333333
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.02 E-value=2.7 Score=46.06 Aligned_cols=93 Identities=15% Similarity=0.124 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHccCChhHHHHH---------HHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCC
Q 003913 180 FALATKLADYMGKERKFAKCRDI---------FDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGY 250 (787)
Q Consensus 180 ~~~~~~li~~~~~~g~~~~A~~~---------f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~ 250 (787)
.+.+++-+--|...|.+++|..+ ++.+.... .+..-+++.=.+|.+. |.-.+-+-+.-+++|++. |-
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~A--LeAL~f~~ARkAY~rV-Rdl~~L~li~EL~~~k~r-ge 631 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEA--LEALDFETARKAYIRV-RDLRYLELISELEERKKR-GE 631 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHHH--HhhhhhHHHHHHHHHH-hccHHHHHHHHHHHHHhc-CC
Confidence 34444445556677777777543 22222111 1344556666666632 334444555556677765 66
Q ss_pred CCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHH
Q 003913 251 QPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHN 285 (787)
Q Consensus 251 ~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~ 285 (787)
.|+......++ +| . |.+.+|.++|.+
T Consensus 632 ~P~~iLlA~~~-Ay--~------gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 632 TPNDLLLADVF-AY--Q------GKFHEAAKLFKR 657 (1081)
T ss_pred CchHHHHHHHH-Hh--h------hhHHHHHHHHHH
Confidence 67766433332 22 2 478888777753
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.14 Score=40.67 Aligned_cols=62 Identities=23% Similarity=0.323 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 438 PSYINLTNMYLNLGMHDRLHLAFSECLE---KCR---PN-RTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~---p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
.+|+.+...|...|++++|+..|++.++ ... |+ ..+++.+...|...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455555566666666666666665553 111 11 34566667777777777777777766543
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.71 Score=41.97 Aligned_cols=90 Identities=13% Similarity=-0.013 Sum_probs=69.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCH
Q 003913 444 TNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDF 523 (787)
Q Consensus 444 i~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~ 523 (787)
..-+...|++++|..+|.-+..-..-|..-|..|...+-..+++++|+..|......+ .-|...+-.+..+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHHHHHHhCCH
Confidence 3445678889999999888776445566677888888888899999999988776654 34666677778888899999
Q ss_pred HHHHHHHHHHHH
Q 003913 524 VKAEKIYDLMCL 535 (787)
Q Consensus 524 ~~A~~~~~~m~~ 535 (787)
+.|+..|+..++
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999988886
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.68 E-value=2.1 Score=38.41 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=23.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 003913 337 SVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKI 380 (787)
Q Consensus 337 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 380 (787)
.++..+.+.+.......+++.+...+. .+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 344444455555556666655555543 3455555566666554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.76 Score=41.69 Aligned_cols=72 Identities=13% Similarity=0.158 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CCCCCCCHHHH
Q 003913 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS-----DQTIGVNTRSC 510 (787)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~~~p~~~t~ 510 (787)
.+...++..+...|++++|..+...+....+-|...|..+|.+|...|+..+|.++|+++.+ .| +.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg-~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELG-IEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhC-cCcCHHHH
Confidence 35566777788899999999999999887788999999999999999999999999987743 46 67776543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.35 Score=42.38 Aligned_cols=85 Identities=8% Similarity=0.081 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHH---------------HCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHH
Q 003913 179 DFALATKLADYMGKERKFAKCRDIFDDII---------------NQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNR 243 (787)
Q Consensus 179 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~---------------~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~ 243 (787)
|..++.++|-++++.|+++....+++..= .....|+..+..+++.+|+ .++++..|+++.+.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~---~n~~i~~al~~vd~ 77 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFG---YNGDIFSALKLVDF 77 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHH---hcccHHHHHHHHHH
Confidence 34566777777777787777777775432 2235688999999999998 79999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHc
Q 003913 244 MIQLGGYQPRPSLHNSLFRALVS 266 (787)
Q Consensus 244 m~~~~g~~pd~~t~~~ll~~~~~ 266 (787)
..+..+++-+..+|..|+.-+..
T Consensus 78 fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 78 FSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHH
Confidence 98887888888899988886544
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.82 Score=39.48 Aligned_cols=137 Identities=17% Similarity=0.159 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003913 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEK 353 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 353 (787)
|.++++.++..+..... +..-++|.| . .--+.....-+++.+..-|---|... +|++.....
T Consensus 16 G~V~qGveii~k~v~Ss---ni~E~NWvI--C---NiiDaa~C~yvv~~LdsIGkiFDis~----------C~NlKrVi~ 77 (161)
T PF09205_consen 16 GDVKQGVEIIEKTVNSS---NIKEYNWVI--C---NIIDAADCDYVVETLDSIGKIFDISK----------CGNLKRVIE 77 (161)
T ss_dssp T-HHHHHHHHHHHHHHS----HHHHTHHH--H---HHHHH--HHHHHHHHHHHGGGS-GGG-----------S-THHHHH
T ss_pred chHHHHHHHHHHHcCcC---Cccccceee--e---ecchhhchhHHHHHHHHHhhhcCchh----------hcchHHHHH
Confidence 68888888888887654 356667766 2 22122223334444444343333332 233332222
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003913 354 TWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGM 433 (787)
Q Consensus 354 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 433 (787)
-+-.+ | .+......-++...+.|+-+.-.+++.++.+ +-.++....-.+..+|.+.|...++.+++.+.-+.|+
T Consensus 78 C~~~~---n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 78 CYAKR---N--KLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHT---T-----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHh---c--chHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 22111 1 1223334456677777777777777777664 2345666666777788888888888888777777775
Q ss_pred C
Q 003913 434 K 434 (787)
Q Consensus 434 ~ 434 (787)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 3
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=94.48 E-value=7.1 Score=40.58 Aligned_cols=104 Identities=16% Similarity=0.132 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003913 335 LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCK 414 (787)
Q Consensus 335 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 414 (787)
.+..|.-|...|....|.++-.+.. .|+..-|-..+.+|+..+++++-.++-.. + -.++-|-.++.+|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHHHH
Confidence 3444445555566655555543331 24555566666666666666654443221 1 123555566666666
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003913 415 AEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHL 458 (787)
Q Consensus 415 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 458 (787)
.|...+|..+..++ .+..-+..|.++|++.+|.+
T Consensus 250 ~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~ 283 (319)
T PF04840_consen 250 YGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQ 283 (319)
T ss_pred CCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHH
Confidence 66666665555441 12344455555555555543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.45 E-value=7.9 Score=41.02 Aligned_cols=391 Identities=13% Similarity=0.116 Sum_probs=214.7
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHhc--CC-----------CccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC----
Q 003913 149 YLAVHCMRIRENETGFRVYEWMMQQ--HW-----------YRFDFALATKLADYMGKERKFAKCRDIFDDIINQGR---- 211 (787)
Q Consensus 149 ~~~~~~~~~~~~~~A~~~~~~m~~~--~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~---- 211 (787)
|-.+.+-+.+.+.+|.+.+..-..+ +. .-+|...-+..++.+.+.|++.+++.++++|..+=.
T Consensus 84 F~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~ 163 (549)
T PF07079_consen 84 FKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKREC 163 (549)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhh
Confidence 3334667889999999888765544 20 122445556778888999999999999998876533
Q ss_pred CCCHhHHHHHHHHHhcC-----CcC-------CCHHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHcCCCCCChh
Q 003913 212 VPSEMTFHILIVAYLSA-----PVQ-------GCLDEACSIYNRMIQLG-----GYQPRPSLHNSLFRALVSKPGGLSKY 274 (787)
Q Consensus 212 ~pd~~ty~~li~~~~~~-----~~~-------g~~~~A~~l~~~m~~~~-----g~~pd~~t~~~ll~~~~~~~~~~~~g 274 (787)
.-|+.+||.++-.+.++ ... ..++-++-...+|...+ .+.|....+..++.-..-... .
T Consensus 164 ~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~----e 239 (549)
T PF07079_consen 164 EWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPK----E 239 (549)
T ss_pred cccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCH----h
Confidence 35788888865555421 000 00111222222222110 234444444444444332211 1
Q ss_pred hHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCChHH
Q 003913 275 YLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEE----GKEVLLSVLRVCAKEGDVED 350 (787)
Q Consensus 275 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p----~~~t~~~li~~~~~~g~~~~ 350 (787)
++.--.+++..-...-+.|+.+..-.-+. ....+ +.+++..+-+.+....+.+ =..+|..++....+.+....
T Consensus 240 ~l~~~mq~l~~We~~yv~p~~~LVi~~L~-~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~ 316 (549)
T PF07079_consen 240 RLPPLMQILENWENFYVHPNYDLVIEPLK-QQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEE 316 (549)
T ss_pred hccHHHHHHHHHHhhccCCchhHHHHHHH-HHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 22222333333333344555443322221 22222 3455555444443332221 24578889999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHH-------HHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHH-HHHHHH---HHHHhc
Q 003913 351 AEKTWLRLLESDNGIPTPAF-------VYKMEAYAK----IGEFMKSLEIFREMQERLGSASVP-AYHKII---ELLCKA 415 (787)
Q Consensus 351 A~~~~~~m~~~~~~~~~~~~-------~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~-t~~~li---~~~~~~ 415 (787)
|.+.+.-+.-..+. ...- ..+.+..|. .-+...=+.++++.....+ |.. .-..|+ .-+-+.
T Consensus 317 a~q~l~lL~~ldp~--~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~ 392 (549)
T PF07079_consen 317 AKQYLALLKILDPR--ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEI 392 (549)
T ss_pred HHHHHHHHHhcCCc--chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhc
Confidence 99998877665432 2211 123333331 1233444556666655422 211 112232 334455
Q ss_pred CC-hHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHhc---CCHHHHHHHHHHHHh-cCCC----CHHHHHHHHHH--
Q 003913 416 EE-TELTESLMKEFVETGMKPLMPSYIN----LTNMYLNL---GMHDRLHLAFSECLE-KCRP----NRTIYGIYLES-- 480 (787)
Q Consensus 416 g~-~~~A~~l~~~m~~~g~~p~~~t~~~----li~~~~~~---g~~~~a~~~~~~m~~-~~~p----~~~~~~~li~~-- 480 (787)
|. -++|.++++...+-- .-|...-|. +=.+|.++ ..+..-..+-+-+.+ |++| +...-|.|.++
T Consensus 393 g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEy 471 (549)
T PF07079_consen 393 GQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEY 471 (549)
T ss_pred CCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHH
Confidence 65 778999999888731 223333222 22344433 234444444444444 6655 34455666554
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHH-HHHHHHhhccccc
Q 003913 481 LKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWME-KLDYVLSLNRKEV 559 (787)
Q Consensus 481 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~-~l~~~~~l~~~~~ 559 (787)
+-..|++.++.-.-.-+.+ +.|++.+|..+.-.+....++++|..++..+. ++.++.+ +.+.++.++++.+
T Consensus 472 Lysqgey~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP-----~n~~~~dskvqKAl~lCqKh~ 543 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP-----PNERMRDSKVQKALALCQKHL 543 (549)
T ss_pred HHhcccHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC-----CchhhHHHHHHHHHHHHHHhh
Confidence 4457999988766555555 67999999999999999999999999998765 4444432 3455666655443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.45 E-value=4.9 Score=42.29 Aligned_cols=79 Identities=13% Similarity=0.010 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003913 334 VLLSVLRVCAKEGDVEDAEKTWLRLLESD---NGIPTPAFVYKMEAYAK---IGEFMKSLEIFREMQERLGSASVPAYHK 407 (787)
Q Consensus 334 t~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 407 (787)
+...++-+|....+++...++.+.+...- +.-...+--...-++-+ .|+.++|++++..+......++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33455556888888888888888887652 11111111223455556 7888888888888666666677777776
Q ss_pred HHHHH
Q 003913 408 IIELL 412 (787)
Q Consensus 408 li~~~ 412 (787)
+...|
T Consensus 223 ~GRIy 227 (374)
T PF13281_consen 223 LGRIY 227 (374)
T ss_pred HHHHH
Confidence 66555
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.51 Score=50.13 Aligned_cols=63 Identities=14% Similarity=0.022 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNR---TIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
...++.+..+|.+.|++++|...|+..++..+-+. .+|..+..+|...|++++|++.+++.++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555555555555444222222 2355555555555555555555555554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.28 E-value=1.5 Score=46.00 Aligned_cols=132 Identities=13% Similarity=0.105 Sum_probs=106.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003913 401 SVPAYHKIIELLCKAEETELTESLMKEFVETG-MKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLE 479 (787)
Q Consensus 401 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~ 479 (787)
=...|...|++..+..-++.|..+|-++.+.| +.+++++++++|.-++ .|+...|..+|+.-+...+.+..--+-.+.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~ 474 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLL 474 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHH
Confidence 45678888888888888999999999999988 6688899999998776 466778888888766655545555566777
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 480 SLKNAGNIEKAEEIFNHMHSDQTIGVN--TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 480 ~~~~~g~~~~A~~l~~~m~~~~~~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
-+.+.++-+.|..+|+..+.+ +..+ ...|..+|.--+.-|+...|..+=++|.+
T Consensus 475 fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 788889999999999976655 3334 56899999999999999999999888886
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.06 E-value=3.2 Score=37.21 Aligned_cols=126 Identities=16% Similarity=0.122 Sum_probs=81.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003913 371 VYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL 450 (787)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 450 (787)
..+|..+.+.+....+..+++.+...+. .+...+|.+|..|++.. ..+..+.+.. ..+.+....++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 4577778788888888888888887763 57778888888888764 3333344332 12334445577777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc
Q 003913 451 GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA-GNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS 519 (787)
Q Consensus 451 g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~ 519 (787)
+.++++..++..+.. |...+..+... ++++.|.+++.+- + +...|..++..+..
T Consensus 83 ~l~~~~~~l~~k~~~--------~~~Al~~~l~~~~d~~~a~~~~~~~---~----~~~lw~~~~~~~l~ 137 (140)
T smart00299 83 KLYEEAVELYKKDGN--------FKDAIVTLIEHLGNYEKAIEYFVKQ---N----NPELWAEVLKALLD 137 (140)
T ss_pred CcHHHHHHHHHhhcC--------HHHHHHHHHHcccCHHHHHHHHHhC---C----CHHHHHHHHHHHHc
Confidence 878777777766531 22233334444 6777777777652 1 55677777766653
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.28 Score=52.07 Aligned_cols=66 Identities=12% Similarity=-0.114 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 003913 468 RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT----RSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (787)
+.+...|+.+..+|.+.|++++|+..|++.++.+ |+. .+|..+..+|.+.|+.++|++.+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~---Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN---PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5678899999999999999999999999999864 663 46999999999999999999999999974
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.01 E-value=4.2 Score=44.64 Aligned_cols=204 Identities=13% Similarity=0.082 Sum_probs=122.2
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 003913 309 DNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLE 388 (787)
Q Consensus 309 ~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 388 (787)
+...+-+...-+++|+++|-.|+.... ...|+-.|++.+|.++|.+- |.+ |..+.+|.....++.|.+
T Consensus 612 Rdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmyTDlRMFD~aQE 679 (1081)
T KOG1538|consen 612 RDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRS---GHE------NRALEMYTDLRMFDYAQE 679 (1081)
T ss_pred hccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHHHHHHHHHHHHH
Confidence 333345555667788899988987654 44567789999999998653 332 123444444444444444
Q ss_pred HHH-------HHH--Hc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHH------HHHHcCCCC---CHHHHHHHHHHHHh
Q 003913 389 IFR-------EMQ--ER-LGSASVPAYHKIIELLCKAEETELTESLMK------EFVETGMKP---LMPSYINLTNMYLN 449 (787)
Q Consensus 389 ~~~-------~m~--~~-g~~p~~~t~~~li~~~~~~g~~~~A~~l~~------~m~~~g~~p---~~~t~~~li~~~~~ 449 (787)
++. +|. ++ ...-|+.-=.+....+...|+.++|..+.. .+.+-+-+. +..+...+..-+-+
T Consensus 680 ~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~ 759 (1081)
T KOG1538|consen 680 FLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKK 759 (1081)
T ss_pred HhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhh
Confidence 432 111 10 000011111233455667788888776632 122222222 33455555555566
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHH-----------HHHHHHHHHH
Q 003913 450 LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTR-----------SCNIILSAYL 518 (787)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~-----------t~~~li~~~~ 518 (787)
...+..|-++|..|-. -..+++.....+++.+|..+-++..+- .||+. -|.-.-.+|.
T Consensus 760 l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~---~~dVy~pyaqwLAE~DrFeEAqkAfh 828 (1081)
T KOG1538|consen 760 LDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEF---KDDVYMPYAQWLAENDRFEEAQKAFH 828 (1081)
T ss_pred ccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCccc---cccccchHHHHhhhhhhHHHHHHHHH
Confidence 7778889999988753 235678888999999999999988874 35532 2333445777
Q ss_pred cCCCHHHHHHHHHHHHH
Q 003913 519 SSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 519 ~~g~~~~A~~~~~~m~~ 535 (787)
++|+-.+|..+++.+..
T Consensus 829 kAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 829 KAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HhcchHHHHHHHHHhhh
Confidence 88888888888887764
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.95 E-value=9.8 Score=40.21 Aligned_cols=176 Identities=15% Similarity=0.081 Sum_probs=110.9
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCChHH
Q 003913 344 KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCK---AEETEL 420 (787)
Q Consensus 344 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~---~g~~~~ 420 (787)
..++-+.|.+....-... .|. .---+-..|.-..+-++....|+..... ...--+++.+=+. .|+++.
T Consensus 314 ~isd~q~al~tv~rg~~~--sps--L~~~lse~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~ 384 (660)
T COG5107 314 GISDKQKALKTVERGIEM--SPS--LTMFLSEYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEY 384 (660)
T ss_pred hccHHHHHHHHHHhcccC--CCc--hheeHHHHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccc
Confidence 345555666554432222 122 1122444555566666666667665431 1111122222222 233433
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 003913 421 TESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-K-CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMH 498 (787)
Q Consensus 421 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~-~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 498 (787)
-.+++-+-+ .--..+|..++++-.+..-++.|..+|.++.+ + ..+++.+++++|.-++. |+...|..+|+-=.
T Consensus 385 ~~Ell~kr~----~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl 459 (660)
T COG5107 385 SKELLLKRI----NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGL 459 (660)
T ss_pred cHHHHHHHH----hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHH
Confidence 333322211 12357889999999999999999999999988 5 68899999999998885 88899999999766
Q ss_pred hCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 499 SDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 499 ~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.+ ++.+..--+-.+.-+.+-++-..|..+|+..+.
T Consensus 460 ~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 460 LK--FPDSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred Hh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 65 333334445667777888999999999996554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.4 Score=46.90 Aligned_cols=116 Identities=9% Similarity=0.023 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHH-----hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003913 331 GKEVLLSVLRVCA-----KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAY 405 (787)
Q Consensus 331 ~~~t~~~li~~~~-----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 405 (787)
|..+|...+..+. +.+.++-....++.|.+-|+.-|..+|+.|++.+-|..- .|..+ +
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~nv-f 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQNV-F 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHHH-H
Confidence 5555555555544 345666666677788888888888888887776544321 12111 1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHh
Q 003913 406 HKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM-HDRLHLAFSECLE 465 (787)
Q Consensus 406 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~-~~~a~~~~~~m~~ 465 (787)
....--|-+ +-+-+..++++|...|+.||..+-..|++++.+.+. ..+..++.--|.+
T Consensus 129 Q~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 129 QKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 111111211 234467788888888888888888888888888775 3334444444443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.89 E-value=1.1 Score=46.73 Aligned_cols=96 Identities=18% Similarity=0.137 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 003913 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAY 517 (787)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~ 517 (787)
.++..|.-+|.+.+.+..|++.-.+.++.-++|+...-.=..+|...|+++.|+..|+++.+.. |-|...-+-|+..-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHH
Confidence 3455566666666666666666666665455666665556666666777777777777776643 22333333333333
Q ss_pred HcCCCH-HHHHHHHHHHHH
Q 003913 518 LSSGDF-VKAEKIYDLMCL 535 (787)
Q Consensus 518 ~~~g~~-~~A~~~~~~m~~ 535 (787)
.+.... +...++|..|..
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 333333 333566666664
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.87 E-value=4.2 Score=42.23 Aligned_cols=134 Identities=15% Similarity=0.038 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----c-CCCCHH
Q 003913 404 AYHKIIELLCKAEETELTESLMKEFVE----TGMK-PLMPSYINLTNMYLNLGMHDRLHLAFSECLE-----K-CRPNRT 472 (787)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~-~~p~~~ 472 (787)
.|..|...|.-.|+++.|+..++.-+. -|-+ ....++..|.+++.-.|+++.|.+.|+.... + -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 566677777778899999887765332 2322 1245788899999999999999998887643 1 123345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh----CCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 003913 473 IYGIYLESLKNAGNIEKAEEIFNHMHS----DQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKK 537 (787)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~----~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (787)
+.-+|...|.-...+++|+..+.+-.. .+..--...+|-+|..+|...|..++|+.+.+.-++..
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 666788888888889999998876432 11111256788999999999999999998888776543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.88 Score=44.64 Aligned_cols=115 Identities=10% Similarity=0.112 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003913 366 PTPAFVYKMEAYAKI-----GEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSY 440 (787)
Q Consensus 366 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 440 (787)
|-.+|-+.+..+... +.++-....++.|.+-|+.-|..+|+.||+.+-+..-.-. .+|+..
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~--nvfQ~~------------ 131 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ--NVFQKV------------ 131 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH--HHHHHH------------
Confidence 556666666666543 5566667777888888888888888888877655432111 111111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHhhh
Q 003913 441 INLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYLESLKNAGNI-EKAEEIFNHMHS 499 (787)
Q Consensus 441 ~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~ 499 (787)
.--|- .+-+-++.++++|.. |+.||-.+-..|+.++.+.|.. .+...+.--|.+
T Consensus 132 ---F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 132 ---FLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred ---HhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 11111 123468899999998 9999999999999999998753 334444444443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=93.82 E-value=10 Score=39.96 Aligned_cols=70 Identities=14% Similarity=-0.052 Sum_probs=41.6
Q ss_pred cCCCHHHHHHHHHHHHHhCCCC-CCHHHHHH-HHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHH
Q 003913 230 VQGCLDEACSIYNRMIQLGGYQ-PRPSLHNS-LFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLI 302 (787)
Q Consensus 230 ~~g~~~~A~~l~~~m~~~~g~~-pd~~t~~~-ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 302 (787)
...+++.-+++++.|.....+. ++...... ..-++-+++ ..|+.++|.+++..++...-.++++++..+.
T Consensus 153 diqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn---~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 153 DIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRN---KPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred hhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcc---cCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 6788999999999998642111 11111100 111122211 1268888888888877666677778877766
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.71 E-value=11 Score=39.98 Aligned_cols=45 Identities=7% Similarity=0.008 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHc
Q 003913 336 LSVLRVCAKEGDVEDAEKTWLRLLESD----NGIPTPAFVYKMEAYAKI 380 (787)
Q Consensus 336 ~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~~~~~li~~~~~~ 380 (787)
+..++++...|++.+++.++.++..+= ..-++.+|+.++-+++++
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH
Confidence 566777788899999998888776643 336788888877777654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=93.68 E-value=10 Score=39.45 Aligned_cols=102 Identities=12% Similarity=0.125 Sum_probs=52.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003913 373 KMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM 452 (787)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 452 (787)
.|.-+...|+...|.++-.+.. .|+..-|-..|.+|+..+++++-..+-.. . -.+.-|-.++.+|.+.|+
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHHHHCCC
Confidence 3444455555555555544332 24555566666666666666554443221 1 122455556666666666
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003913 453 HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEI 493 (787)
Q Consensus 453 ~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 493 (787)
..+|......+ .+..-+..|.++|++.+|.+.
T Consensus 253 ~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHH
Confidence 66655555441 123445555666666665544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.66 E-value=7.7 Score=38.00 Aligned_cols=153 Identities=11% Similarity=0.154 Sum_probs=76.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHH
Q 003913 441 INLTNMYLNLGMHDRLHLAFSECLEKCRP------------NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTR 508 (787)
Q Consensus 441 ~~li~~~~~~g~~~~a~~~~~~m~~~~~p------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~ 508 (787)
+-|...|...+.+.+..+++.++...|.. -...|..=|.+|..+.+-..-..++++......--|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 44555555556555555555555432211 134566667777777666666666666543221224433
Q ss_pred HHHHHHHH-----HHcCCCHHHHHHH-HHHHH---HcCCccCHHHHHHHHHHHhhcccccc---cccccCCchHHHHHHH
Q 003913 509 SCNIILSA-----YLSSGDFVKAEKI-YDLMC---LKKYEIESAWMEKLDYVLSLNRKEVK---KPVSLNLSSEQRENLI 576 (787)
Q Consensus 509 t~~~li~~-----~~~~g~~~~A~~~-~~~m~---~~g~~~~p~~~~~l~~~~~l~~~~~~---~~~~~~l~~~~~~~~~ 576 (787)
.... |+- ..+.|++++|..- |+... +.|-+-....+..+..+-.+.+..+. ..-..|..-+|...+.
T Consensus 229 ImGv-IRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKPyKNdPEIlAM 307 (440)
T KOG1464|consen 229 IMGV-IRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAM 307 (440)
T ss_pred HHhH-HHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCCCCCCHHHHHH
Confidence 3322 222 2356667666433 33222 22322222223333334444443333 1112345556779999
Q ss_pred HHHhhhhhhccchhhccee
Q 003913 577 GLLLGGLCIESDEKRKRHM 595 (787)
Q Consensus 577 ~~ll~~~~~~~~~~~a~~~ 595 (787)
..|+.+|+... +.+.+++
T Consensus 308 Tnlv~aYQ~Nd-I~eFE~I 325 (440)
T KOG1464|consen 308 TNLVAAYQNND-IIEFERI 325 (440)
T ss_pred HHHHHHHhccc-HHHHHHH
Confidence 99999998654 3333333
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.61 E-value=1.1 Score=46.60 Aligned_cols=127 Identities=12% Similarity=0.104 Sum_probs=85.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc-----CCCC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003913 373 KMEAYAKIGEFMKSLEIFREMQER-----LGSA---------SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMP 438 (787)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~-----g~~p---------~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 438 (787)
-.+.|.+.|++..|...|++.... +..+ -..+++.+..+|.+.+++.+|++...+.+..+ ++|..
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchh
Confidence 357888899999999888875432 1111 12346667777777888888888887777765 56777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHhhhC
Q 003913 439 SYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEK-AEEIFNHMHSD 500 (787)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~ 500 (787)
...-=..+|...|+++.|+..|+++++--+-|-.+-+-|+..--+.....+ ..++|..|..+
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 777777788888888888888888877555566666666665555444433 35666666543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=93.59 E-value=2.2 Score=38.88 Aligned_cols=85 Identities=11% Similarity=-0.009 Sum_probs=37.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003913 344 KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTES 423 (787)
Q Consensus 344 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 423 (787)
..|++++|..+|.-+.-.++. +..-|..|..++-..+++++|...|......+. -|...+-.+..++...|+.+.|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHH
Confidence 445555555555554444332 333344444444445555555555544332221 122223334444444455555555
Q ss_pred HHHHHHH
Q 003913 424 LMKEFVE 430 (787)
Q Consensus 424 l~~~m~~ 430 (787)
.|...++
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 4444443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.50 E-value=2.6 Score=43.21 Aligned_cols=96 Identities=17% Similarity=0.225 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCC---ccCHHHHHHHHHHhhhccC
Q 003913 234 LDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGL---EIQKDIYSGLIWLHSYQDN 310 (787)
Q Consensus 234 ~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~---~p~~~~~~~li~~~~~~~~ 310 (787)
+++.+.+++.|++. |++-+.++|-+..-........-..-....|..+|+.|.+.-+ .++..+++.++....---.
T Consensus 78 ~~~~~~~y~~L~~~-gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e 156 (297)
T PF13170_consen 78 FKEVLDIYEKLKEA-GFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHHh-ccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHH
Confidence 55667788889886 7998888877654444331111111256677777777766542 2333444444411110000
Q ss_pred CCHHHHHHHHHHHHHcCCCC
Q 003913 311 IDKERISLLKKEMQQAGFEE 330 (787)
Q Consensus 311 g~~~~a~~l~~~m~~~g~~p 330 (787)
--.+.++.+|+.+.+.|+..
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~k 176 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKK 176 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 01244455555555555544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.41 E-value=8.7 Score=38.51 Aligned_cols=142 Identities=15% Similarity=0.153 Sum_probs=77.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 003913 340 RVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETE 419 (787)
Q Consensus 340 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 419 (787)
......|++.+|..+|+........ +...--.++.+|...|+.+.|..++..+...--........+-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3455778888888888888877654 345556688888888999999988888764421112222222233344444443
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcC
Q 003913 420 LTESLMKEFVETGMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPNRTIYGIYLESLKNAG 485 (787)
Q Consensus 420 ~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~~~~~~~li~~~~~~g 485 (787)
+...+-++.-. .| |...-..+...|...|+.+.|.+.+-.+++ ...-|...-..|+..+.-.|
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 33333333332 23 455555555566666666666555444443 22223333444444443333
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.13 E-value=11 Score=38.39 Aligned_cols=102 Identities=16% Similarity=0.123 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003913 333 EVLLSVLRVCAKEGDVE---DAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKII 409 (787)
Q Consensus 333 ~t~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 409 (787)
.++..++.+|...+..+ +|.++++.+...... ...++-.-+..+.+.++.+++.+.+.+|...- .-....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 35666777777766654 455566666544332 23445445666666888888888888888652 11223444444
Q ss_pred HHH---HhcCChHHHHHHHHHHHHcCCCCCH
Q 003913 410 ELL---CKAEETELTESLMKEFVETGMKPLM 437 (787)
Q Consensus 410 ~~~---~~~g~~~~A~~l~~~m~~~g~~p~~ 437 (787)
..+ ... ....|...+..++...+.|..
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 433 332 334555666665554445443
|
It is also involved in sporulation []. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.07 E-value=2.6 Score=45.97 Aligned_cols=133 Identities=15% Similarity=0.083 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 367 TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM 446 (787)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 446 (787)
..-.+.++.-+-+.|..+.|+.+-.+-.. -.....+.|+++.|.++.++ ..+...|..|.+.
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKE------LDDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHH
Confidence 34455566666666666666665443221 13334556666666555332 2345566666666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 003913 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKA 526 (787)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A 526 (787)
..+.|+++-|++.|.+.. -|..|.-.|.-.|+.+.-.++.+....+| -+|....++.-.|+.++.
T Consensus 357 AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~-------~~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERG-------DINIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHcc-------CHHHHHHHHHHcCCHHHH
Confidence 777777777766666643 24556666666777666666666666655 244445555556666666
Q ss_pred HHHHHH
Q 003913 527 EKIYDL 532 (787)
Q Consensus 527 ~~~~~~ 532 (787)
.+++.+
T Consensus 422 v~lL~~ 427 (443)
T PF04053_consen 422 VDLLIE 427 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.94 E-value=9.5 Score=37.00 Aligned_cols=201 Identities=14% Similarity=0.185 Sum_probs=109.9
Q ss_pred hhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 003913 305 HSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFM 384 (787)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 384 (787)
.+|....++++|...+.+..+ |.+-|...|. ....++.|.-+.++|.+..- -+..|+--..+|..+|..+
T Consensus 39 vafRnAk~feKakdcLlkA~~-~yEnnrslfh-------AAKayEqaamLake~~klsE--vvdl~eKAs~lY~E~Gspd 108 (308)
T KOG1585|consen 39 VAFRNAKKFEKAKDCLLKASK-GYENNRSLFH-------AAKAYEQAAMLAKELSKLSE--VVDLYEKASELYVECGSPD 108 (308)
T ss_pred HHHHhhccHHHHHHHHHHHHH-HHHhcccHHH-------HHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHhCCcc
Confidence 445555566666665554432 1122222221 23445666666666665431 2345677788888899888
Q ss_pred HHHHHHHHHHH--cCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003913 385 KSLEIFREMQE--RLGSASVP--AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAF 460 (787)
Q Consensus 385 ~A~~~~~~m~~--~g~~p~~~--t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 460 (787)
-|-..+++.-+ .++.|+.. .|.--+...-..++...|.++ |..+-+.+.+...+++|-..|
T Consensus 109 tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el---------------~gk~sr~lVrl~kf~Eaa~a~ 173 (308)
T KOG1585|consen 109 TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL---------------YGKCSRVLVRLEKFTEAATAF 173 (308)
T ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH---------------HHHhhhHhhhhHHhhHHHHHH
Confidence 88777776532 12344322 233333333333333333333 334445566667776665555
Q ss_pred HHHHh---cC--CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 003913 461 SECLE---KC--RPNR-TIYGIYLESLKNAGNIEKAEEIFNHMHSDQT--IGVNTRSCNIILSAYLSSGDFVKAEKIYD 531 (787)
Q Consensus 461 ~~m~~---~~--~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~--~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 531 (787)
.+-.. .+ -++. ..|-+.|-.|.-..++..|...++.--+.+. -+-+..+...|+.+| ..|+.+++.+++.
T Consensus 174 lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 174 LKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 44321 11 2222 3456666677777899999999988444321 123567888888888 4577776655543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.93 E-value=7.1 Score=43.19 Aligned_cols=162 Identities=15% Similarity=0.134 Sum_probs=90.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHH
Q 003913 335 LLSVLRVCAKEGDVEDAEKTWLRLLESD-NGIP-----TPAFVYKMEAYAK----IGEFMKSLEIFREMQERLGSASVPA 404 (787)
Q Consensus 335 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t 404 (787)
+..++....-.|+-+.+.+.+.+..+.+ +.-. .-.|...+..++. ....+.|.++++.+..+ -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 3445555556677777777776655532 2111 1234444444433 34567777778777765 456655
Q ss_pred HHHHH-HHHHhcCChHHHHHHHHHHHHcC--C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-
Q 003913 405 YHKII-ELLCKAEETELTESLMKEFVETG--M-KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLE- 479 (787)
Q Consensus 405 ~~~li-~~~~~~g~~~~A~~l~~~m~~~g--~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~- 479 (787)
|...- +.+...|++++|.+.|++..... . +.....+--+...+.-..++++|...|..+.+...-...+|.-+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 54333 45556677888888877655311 1 1123445555666666777777777777776633334444444432
Q ss_pred HHHhcCCH-------HHHHHHHHHhh
Q 003913 480 SLKNAGNI-------EKAEEIFNHMH 498 (787)
Q Consensus 480 ~~~~~g~~-------~~A~~l~~~m~ 498 (787)
.|...|+. ++|.++|.+..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 33345555 66666666654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.78 E-value=5.8 Score=43.87 Aligned_cols=113 Identities=15% Similarity=0.177 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCC-CCCC-----HhHHHHHHHHHhcC-CcCCCH
Q 003913 162 TGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQG-RVPS-----EMTFHILIVAYLSA-PVQGCL 234 (787)
Q Consensus 162 ~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g-~~pd-----~~ty~~li~~~~~~-~~~g~~ 234 (787)
-+..+|.-+... +||.+ ..++...+=.|+-+.+++.+.+-.+.+ +.-. ..+|+..+..++.. ......
T Consensus 175 ~G~G~f~L~lSl--LPp~~---~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~ 249 (468)
T PF10300_consen 175 FGFGLFNLVLSL--LPPKV---LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPL 249 (468)
T ss_pred HHHHHHHHHHHh--CCHHH---HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCH
Confidence 356677777765 55553 467777778899999999888766542 2211 24577777776631 014678
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHH
Q 003913 235 DEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLL 287 (787)
Q Consensus 235 ~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~ 287 (787)
+.|.+++..+.+. -|+...|...-.-+.... |++++|.+.|+...
T Consensus 250 ~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~-----g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 250 EEAEELLEEMLKR---YPNSALFLFFEGRLERLK-----GNLEEAIESFERAI 294 (468)
T ss_pred HHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHh-----cCHHHHHHHHHHhc
Confidence 8899999999875 588887766665555544 58999999988765
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.036 Score=35.79 Aligned_cols=28 Identities=14% Similarity=0.077 Sum_probs=25.6
Q ss_pred EEEccCCcccHHHHHHHHHHchhhcCCC
Q 003913 598 FQFNENSRMHSVLRRYLYDQYHEWLHPS 625 (787)
Q Consensus 598 ~~~~p~~~~~~~~l~~~y~~~g~~~~A~ 625 (787)
++++|+++.++..|+.+|...|++++|.
T Consensus 6 ie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 6 IELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 5678999999999999999999999885
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.96 E-value=5.5 Score=40.35 Aligned_cols=153 Identities=11% Similarity=0.052 Sum_probs=76.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCCHHH
Q 003913 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSY----INLTNMYLNLGMHDR 455 (787)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~----~~li~~~~~~g~~~~ 455 (787)
.|+..+|-..++++.+. .+.|..+++-.=.+|.-+|+.+.-...++++... ..||...| ..+.-++..+|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45555555555555554 3445555555556666666666666666655542 12332222 222233345566666
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003913 456 LHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTI--GVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533 (787)
Q Consensus 456 a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~--~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 533 (787)
|++.-++..+-.+-|.-+-.++...+-..|++.++.++..+-...-.. -.-...|-...-.+...+.++.|+++|++=
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 666666655544455555555666666666666666665543322100 000011222222334456666666666654
Q ss_pred H
Q 003913 534 C 534 (787)
Q Consensus 534 ~ 534 (787)
+
T Consensus 274 i 274 (491)
T KOG2610|consen 274 I 274 (491)
T ss_pred H
Confidence 3
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.94 E-value=2.6 Score=36.40 Aligned_cols=91 Identities=14% Similarity=0.035 Sum_probs=66.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH---HHHHHHHHHHHcCCC
Q 003913 446 MYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT---RSCNIILSAYLSSGD 522 (787)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~---~t~~~li~~~~~~g~ 522 (787)
+.+..|+++.|++.|.+.+.-++.+...||.-..+|--+|+.++|++-+++..+..+ .-.. ..|.--...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag-~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAG-DQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHhCc
Confidence 566778888888888888877778888888888888888888888888888877531 1122 223333345677888
Q ss_pred HHHHHHHHHHHHHcC
Q 003913 523 FVKAEKIYDLMCLKK 537 (787)
Q Consensus 523 ~~~A~~~~~~m~~~g 537 (787)
.+.|..=|+...+-|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888888877655
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.81 E-value=13 Score=35.80 Aligned_cols=223 Identities=17% Similarity=0.077 Sum_probs=155.9
Q ss_pred hHHHHHHHHHHHHHcCCcc-CHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHH
Q 003913 275 YLQQAEFIFHNLLTSGLEI-QKDIYSGLIWLHSYQDNIDKERISLLKKEMQQA-GFEEGKEVLLSVLRVCAKEGDVEDAE 352 (787)
Q Consensus 275 ~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A~ 352 (787)
....+...+.......... ....+.... ..+...+....+...+...... ........+......+...+....+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLA--LALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHH--HHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 4445555555554433321 123333333 5566777788888777776653 23445567777888888899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003913 353 KTWLRLLESDNGIPTPAFVYKME-AYAKIGEFMKSLEIFREMQERLG--SASVPAYHKIIELLCKAEETELTESLMKEFV 429 (787)
Q Consensus 353 ~~~~~m~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~ 429 (787)
+.+.........+ ......... .+...|+++.|...|.+...... ......+......+...++.+.|...+.+..
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999988865443 223333334 79999999999999999865321 1233445555555778899999999999998
Q ss_pred HcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 430 ETGMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 430 ~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
+.. .. ....+..+...+...+..+.|...+.......+.....+..+...+...|..++|...+.+.....
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 753 23 478889999999999999999999999887444445556666666667788999999999998864
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=91.75 E-value=16 Score=39.30 Aligned_cols=150 Identities=11% Similarity=0.032 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHHc-CCCCCH-HHHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003913 383 FMKSLEIFREMQER-LGSASV-PAYHKIIELLCK---------AEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG 451 (787)
Q Consensus 383 ~~~A~~~~~~m~~~-g~~p~~-~t~~~li~~~~~---------~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 451 (787)
.+.|+.+|.+.... ...|+- ..|..+..++.. .....+|.++-++..+.+ .-|..+...+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 45677778777621 233432 233333222221 234456777777777765 567888888888888888
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 003913 452 MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYD 531 (787)
Q Consensus 452 ~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 531 (787)
+++.|..+|+....-.+....+|......+.-+|+.++|.+.+++..+....+--.......++.|+.++ .++|+++|-
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 8999999999988765666677777777777789999999999997775422222333344455676665 577777765
Q ss_pred HHH
Q 003913 532 LMC 534 (787)
Q Consensus 532 ~m~ 534 (787)
+-.
T Consensus 432 ~~~ 434 (458)
T PRK11906 432 KET 434 (458)
T ss_pred hcc
Confidence 433
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.73 E-value=2.5 Score=41.80 Aligned_cols=86 Identities=14% Similarity=0.104 Sum_probs=42.6
Q ss_pred cCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHhcCCHHH
Q 003913 415 AEETELTESLMKEFVETGM--KPLMPSYINLTNMYLNLGMHDRLHLAFSECLE---KCRPNRTIYGIYLESLKNAGNIEK 489 (787)
Q Consensus 415 ~g~~~~A~~l~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~p~~~~~~~li~~~~~~g~~~~ 489 (787)
.|++..|...|...++..- .-....+.-|..++...|++++|..+|..+.+ ..+.-+...--|.....+.|+.++
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 3445555555555554320 01123444455555555555555555555554 122233444555555555666666
Q ss_pred HHHHHHHhhhC
Q 003913 490 AEEIFNHMHSD 500 (787)
Q Consensus 490 A~~l~~~m~~~ 500 (787)
|..+|++..++
T Consensus 234 A~atl~qv~k~ 244 (262)
T COG1729 234 ACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHH
Confidence 66666666555
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.53 E-value=1.8 Score=43.41 Aligned_cols=79 Identities=13% Similarity=0.104 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----cCCccCHHHH
Q 003913 471 RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL-----KKYEIESAWM 545 (787)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~p~~~ 545 (787)
..++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|.|...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 3466777888888888888888888888875 55788888888888888888888888887765 3544555443
Q ss_pred HHHHHH
Q 003913 546 EKLDYV 551 (787)
Q Consensus 546 ~~l~~~ 551 (787)
..|..+
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 444433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.93 E-value=0.68 Score=31.83 Aligned_cols=28 Identities=11% Similarity=0.185 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 473 IYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
+|..+...|.+.|++++|+++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555555555555555555555554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.90 E-value=26 Score=37.95 Aligned_cols=87 Identities=15% Similarity=0.095 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-HHHH
Q 003913 434 KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP--NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN-TRSC 510 (787)
Q Consensus 434 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~-~~t~ 510 (787)
.|-..+-..|..++-+.|+.++|.+.|.+|.+..+. +..+...||..|...+.+.++..++.+-.+.. .+.. ..+|
T Consensus 256 ~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSAti~Y 334 (539)
T PF04184_consen 256 NVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-LPKSATICY 334 (539)
T ss_pred chhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchHHHHH
Confidence 333444456777777889999999999999874333 45578889999999999999999999876543 2222 3566
Q ss_pred HHHHHHHHcCC
Q 003913 511 NIILSAYLSSG 521 (787)
Q Consensus 511 ~~li~~~~~~g 521 (787)
+..+-.+...+
T Consensus 335 TaALLkaRav~ 345 (539)
T PF04184_consen 335 TAALLKARAVG 345 (539)
T ss_pred HHHHHHHHhhc
Confidence 66554433333
|
The molecular function of this protein is uncertain. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.77 E-value=23 Score=40.19 Aligned_cols=330 Identities=12% Similarity=0.072 Sum_probs=180.6
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCCh--hHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCc
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKF--AKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPV 230 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~ 230 (787)
.+...+.+..|.++-.|+...- ..+..+|.....-+.+..+. +++.+.+++=...-..|. ++|..+.+--. .
T Consensus 446 Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~-iSy~~iA~~Ay---~ 519 (829)
T KOG2280|consen 446 RLVDRHLYSVAIQVAKLLNLPE--SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPG-ISYAAIARRAY---Q 519 (829)
T ss_pred HHHhcchhHHHHHHHHHhCCcc--ccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCc-eeHHHHHHHHH---h
Confidence 3456788999999999886542 22367788888888776433 233333333222223444 55555544333 5
Q ss_pred CCCHHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhh
Q 003913 231 QGCLDEACSIYNRMIQLGGYQ---PRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSY 307 (787)
Q Consensus 231 ~g~~~~A~~l~~~m~~~~g~~---pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 307 (787)
.|+.+-|..+++.=.....-. -+..-+...+.-+... |+.+....++-.+...-. ...+...+
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies------~d~~Li~~Vllhlk~~~~---~s~l~~~l----- 585 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIES------GDTDLIIQVLLHLKNKLN---RSSLFMTL----- 585 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhc------CCchhHHHHHHHHHHHHH---HHHHHHHH-----
Confidence 999999999887443321111 1222344555555554 577777777666543211 11111111
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH-H----hCCCCCCHHHHHHHHHHHHHcCC
Q 003913 308 QDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRL-L----ESDNGIPTPAFVYKMEAYAKIGE 382 (787)
Q Consensus 308 ~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m-~----~~~~~~~~~~~~~li~~~~~~g~ 382 (787)
.+.-.|..+|.+..+.. |..+ +-+.|-...+...+-.++-+- . ..+..|+ .....+.+.+...
T Consensus 586 ---~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~ 653 (829)
T KOG2280|consen 586 ---RNQPLALSLYRQFMRHQ---DRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKE 653 (829)
T ss_pred ---HhchhhhHHHHHHHHhh---chhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhh
Confidence 11334555665554421 1111 112222222222222221111 0 1122222 2223344444333
Q ss_pred h----------HHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003913 383 F----------MKSLEIFREMQE-RLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG 451 (787)
Q Consensus 383 ~----------~~A~~~~~~m~~-~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 451 (787)
. .+-+.+++.+.. .|..-.--|.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..+
T Consensus 654 ~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~ 729 (829)
T KOG2280|consen 654 KSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIK 729 (829)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhh
Confidence 1 111222333322 2322333345556666777888888888776654 578888888888899988
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 003913 452 MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYD 531 (787)
Q Consensus 452 ~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 531 (787)
++++-+++-+.+. .+.-|.-.+.+|.+.|+.++|.+.+.+.... . -...+|.+.|++.+|.++--
T Consensus 730 kweeLekfAkskk-----sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l------~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 730 KWEELEKFAKSKK-----SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL------Q----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hHHHHHHHHhccC-----CCCCchhHHHHHHhcccHHHHhhhhhccCCh------H----HHHHHHHHhccHHHHHHHHH
Confidence 8888777665543 2455666788888999999999888776432 1 45677888888888887655
Q ss_pred HH
Q 003913 532 LM 533 (787)
Q Consensus 532 ~m 533 (787)
+-
T Consensus 795 ~~ 796 (829)
T KOG2280|consen 795 EH 796 (829)
T ss_pred Hh
Confidence 43
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.50 E-value=4.1 Score=44.41 Aligned_cols=134 Identities=18% Similarity=0.213 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL 411 (787)
Q Consensus 332 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 411 (787)
..-.+.++.-+-+.|..+.|.++-.. .. .-.+...++|+++.|.++-++. .+...|..|...
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHH
Confidence 44477888888888888888876532 21 2355667888888888765433 266788888888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003913 412 LCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAE 491 (787)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~ 491 (787)
..+.|+++.|.+.|.+..+ +..|+-.|.-.|+.+...++.+....... +|....++.-.|++++..
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-----~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD-----INIAFQAALLLGDVEECV 422 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT------HHHHHHHHHHHT-HHHHH
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC-----HHHHHHHHHHcCCHHHHH
Confidence 8888888888888877553 56777778888887777777666554211 445555555667777777
Q ss_pred HHHHHh
Q 003913 492 EIFNHM 497 (787)
Q Consensus 492 ~l~~~m 497 (787)
+++.+-
T Consensus 423 ~lL~~~ 428 (443)
T PF04053_consen 423 DLLIET 428 (443)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 776654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.44 E-value=1 Score=30.97 Aligned_cols=40 Identities=15% Similarity=0.239 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 003913 439 SYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYL 478 (787)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li 478 (787)
++..+..+|...|++++|+++|+.+++..+-|...|..|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4556667777777777777777777765566666665554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.39 E-value=19 Score=35.41 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003913 335 LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAY 377 (787)
Q Consensus 335 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 377 (787)
-..++-++-+.+++++|....++..+.-+......|..-|.++
T Consensus 74 ~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 74 QLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 3344444445555555555555554443332233333333333
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=90.10 E-value=9.3 Score=41.03 Aligned_cols=121 Identities=9% Similarity=0.027 Sum_probs=90.7
Q ss_pred ChHHHHHHHHHHHH-cCCCCC-HHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 003913 417 ETELTESLMKEFVE-TGMKPL-MPSYINLTNMYLNL---------GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG 485 (787)
Q Consensus 417 ~~~~A~~l~~~m~~-~g~~p~-~~t~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g 485 (787)
..+.|..+|.+... +.+.|+ ...|..+..++... ....+|.+.-+...+..+-|..+...+..++.-.|
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 35678888998883 345665 44555554444332 23556777777777766788999888888888889
Q ss_pred CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHH
Q 003913 486 NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESA 543 (787)
Q Consensus 486 ~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~ 543 (787)
+++.|..+|++....+ |....+|......+.-+|+.++|.+.+++..+ .+|.
T Consensus 353 ~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr----LsP~ 404 (458)
T PRK11906 353 QAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQ----LEPR 404 (458)
T ss_pred chhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----cCch
Confidence 9999999999999975 34466777777778889999999999999765 6775
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.04 E-value=6.5 Score=34.06 Aligned_cols=87 Identities=15% Similarity=0.047 Sum_probs=38.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCHH---HHHHHHHHHHhcCCH
Q 003913 413 CKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPNRT---IYGIYLESLKNAGNI 487 (787)
Q Consensus 413 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~~~---~~~~li~~~~~~g~~ 487 (787)
+..|+++.|++.|.+.+.. .+-....||.-..++--.|+.++|+.-+++.++ |.+ ... .|---...|-..|+-
T Consensus 54 aE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCch
Confidence 3444444444444444432 122344444444444444444444444444443 111 111 122223344555666
Q ss_pred HHHHHHHHHhhhCC
Q 003913 488 EKAEEIFNHMHSDQ 501 (787)
Q Consensus 488 ~~A~~l~~~m~~~~ 501 (787)
+.|..-|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666666665555
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.72 E-value=28 Score=36.30 Aligned_cols=297 Identities=11% Similarity=-0.018 Sum_probs=179.5
Q ss_pred HHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHH
Q 003913 217 TFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKD 296 (787)
Q Consensus 217 ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 296 (787)
.|.+|-.|+... -.|+-..|.++-.+-.+. +.-|..-.-.++.+-..... |+.+.|.+-|+.|... |..-
T Consensus 84 gyqALStGliAa-gAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~e----G~~~~Ar~kfeAMl~d---PEtR 153 (531)
T COG3898 84 GYQALSTGLIAA-GAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLE----GDYEDARKKFEAMLDD---PETR 153 (531)
T ss_pred HHHHHhhhhhhh-ccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhc----CchHHHHHHHHHHhcC---hHHH
Confidence 355555555422 367888887776666543 55566555556665443322 6888888888888752 1111
Q ss_pred HHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHH--HHH
Q 003913 297 IYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG-KEVLLSVLRVCAKEGDVEDAEKTWLRLLESD-NGIPTPA--FVY 372 (787)
Q Consensus 297 ~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~--~~~ 372 (787)
....--+.....+.|+.+.|...-++.-. .-|. .....+++...|..|+++.|.++.+.-.+.. +.+++.- -..
T Consensus 154 llGLRgLyleAqr~GareaAr~yAe~Aa~--~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAv 231 (531)
T COG3898 154 LLGLRGLYLEAQRLGAREAARHYAERAAE--KAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAV 231 (531)
T ss_pred HHhHHHHHHHHHhcccHHHHHHHHHHHHh--hccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHH
Confidence 11111111334566777777776665543 3444 4567888999999999999999988766543 2333321 112
Q ss_pred HHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003913 373 KMEAYAK---IGEFMKSLEIFREMQERLGSASVPAY-HKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL 448 (787)
Q Consensus 373 li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 448 (787)
|+.+-+. .-+...|...-.+..+ +.||.+-- ..-..++.+.|++.++-.+++.+-+..-.|+. . ++..+.
T Consensus 232 LLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~a 305 (531)
T COG3898 232 LLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRA 305 (531)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHh
Confidence 3322221 1234444444443332 45665532 23347888999999999999999886544442 2 222344
Q ss_pred hcCCHHHHHHHHHHHHh--cC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcC-CCHH
Q 003913 449 NLGMHDRLHLAFSECLE--KC-RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSS-GDFV 524 (787)
Q Consensus 449 ~~g~~~~a~~~~~~m~~--~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~-g~~~ 524 (787)
+.|+ .++.-++...+ .. +.|..+--.+..+-...|++..|..--+..... .|....|..|.+.-... |+-.
T Consensus 306 r~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~---~pres~~lLlAdIeeAetGDqg 380 (531)
T COG3898 306 RSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE---APRESAYLLLADIEEAETGDQG 380 (531)
T ss_pred cCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh---CchhhHHHHHHHHHhhccCchH
Confidence 5554 22222333222 22 445667777778888889998888777776664 58888888888765544 9999
Q ss_pred HHHHHHHHHHHc
Q 003913 525 KAEKIYDLMCLK 536 (787)
Q Consensus 525 ~A~~~~~~m~~~ 536 (787)
++...+-+..+.
T Consensus 381 ~vR~wlAqav~A 392 (531)
T COG3898 381 KVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHhcC
Confidence 999988887754
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.33 E-value=3.7 Score=41.23 Aligned_cols=78 Identities=12% Similarity=0.090 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CCCCCCCHHHHHH
Q 003913 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS-----DQTIGVNTRSCNI 512 (787)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~~~p~~~t~~~ 512 (787)
.++..++..+...|+.+.+...++....-.+-+...|..|+.+|.+.|+...|+..|+.+.+ .| +.|-..+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg-i~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG-IDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC-CCccHHHHHH
Confidence 45666777777777777777777777776677778888888888888888888888877654 45 7777777666
Q ss_pred HHHH
Q 003913 513 ILSA 516 (787)
Q Consensus 513 li~~ 516 (787)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.03 E-value=4.5 Score=40.08 Aligned_cols=102 Identities=18% Similarity=0.124 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-HHHHHHHH
Q 003913 439 SYINLTNMYLNLGMHDRLHLAFSECLEKCRPN---RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN-TRSCNIIL 514 (787)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~-~~t~~~li 514 (787)
.|+.-+.. .+.|++..|...|...+++.+-+ ...+--|...+...|++++|..+|..+.+...-.|- ..+.--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 56665554 45667999999999998854433 345666899999999999999999999886422222 36778888
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCccCH
Q 003913 515 SAYLSSGDFVKAEKIYDLMCLKKYEIES 542 (787)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~g~~~~p 542 (787)
....+.|+.++|...|++..+ .|+-.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k-~YP~t~ 249 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIK-RYPGTD 249 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHH-HCCCCH
Confidence 889999999999999999996 454333
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.69 E-value=29 Score=34.99 Aligned_cols=146 Identities=9% Similarity=0.030 Sum_probs=87.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003913 374 MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMH 453 (787)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 453 (787)
.......|+..+|..+|.......-. +...--.++.+|...|+.+.|..++..+-..--.........-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 44566778888888888887765322 34455567888888899999988888765432112222222233444444433
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCC
Q 003913 454 DRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSG 521 (787)
Q Consensus 454 ~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g 521 (787)
.+...+-...-. .+-|...--.|...|...|+.++|.+.+-.+.+++.---|...-..|+..+.--|
T Consensus 220 ~~~~~l~~~~aa-dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 220 PEIQDLQRRLAA-DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 333333333222 2447777778888888888888888887777665311223444455555555444
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.24 E-value=9.2 Score=34.07 Aligned_cols=71 Identities=15% Similarity=0.215 Sum_probs=37.5
Q ss_pred hccCCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003913 307 YQDNIDKERISLLKKEMQQAGFEE---GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYA 378 (787)
Q Consensus 307 ~~~~g~~~~a~~l~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 378 (787)
..+.|++.+|.+.|+.+... .+. ....--.++.+|.+.+++++|...+++.++..+...-+-|...+.+++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 34455566666666665543 111 223344566666666666666666666666554433344444444444
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.83 E-value=14 Score=32.96 Aligned_cols=53 Identities=8% Similarity=-0.034 Sum_probs=25.0
Q ss_pred hcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 449 NLGMHDRLHLAFSECLEKCR---PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
+.|++++|.+.|+.+....+ -...+--.|+.+|-+.|++++|...+++.++.+
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 44445555555555444221 122334444555555555555555555555543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=87.56 E-value=1.2 Score=29.04 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=20.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 509 SCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 509 t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
+|..|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888855
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.15 E-value=0.79 Score=29.47 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=12.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH
Q 003913 468 RPNRTIYGIYLESLKNAGNIEKAE 491 (787)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~ 491 (787)
+-|..+|+.|...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445555555555555555555553
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.11 E-value=25 Score=32.48 Aligned_cols=135 Identities=16% Similarity=0.113 Sum_probs=82.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003913 387 LEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK 466 (787)
Q Consensus 387 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 466 (787)
.++++.+.+.+++|+...|..+|..+.+.|+... +..++..++-+|.......+-.+.. ....+.++=-.|.+.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 3455666677888888888888888888887654 4555566666776655555433332 223344443344331
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 467 CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 467 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
. ...+..++..+...|++-+|+.+.+...... ...-..++.+-.+.+|...=..+|+-..+
T Consensus 88 L---~~~~~~iievLL~~g~vl~ALr~ar~~~~~~-----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 L---GTAYEEIIEVLLSKGQVLEALRYARQYHKVD-----SVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred h---hhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-----cCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 1256667788888999999999888764432 12224456666677766555555555544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=86.62 E-value=9.4 Score=35.86 Aligned_cols=63 Identities=14% Similarity=0.176 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003913 368 PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASV--PAYHKIIELLCKAEETELTESLMKEFVE 430 (787)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (787)
..+..+.+-|++.|+.++|++.|.++.+....+.. ..+-.+|......+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34555666777777777777777776665433332 2345566666666666666666555543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=86.33 E-value=1.4 Score=28.63 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhh
Q 003913 473 IYGIYLESLKNAGNIEKAEEIFNHMH 498 (787)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~ 498 (787)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888744
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.27 E-value=1.5 Score=27.95 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 508 RSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 508 ~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.+|..+...|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3455666666666666666666666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=86.04 E-value=14 Score=34.75 Aligned_cols=97 Identities=12% Similarity=0.103 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCHHHHHH--
Q 003913 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKPL--MPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPNRTIYGI-- 476 (787)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~~~~~~~-- 476 (787)
..+..+..-|++.|+.+.|.+.|.++.+....+. ...+..+|....-.+++..+.....+... ....|...-|-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3577788889999999999999999888655544 45677788888888888888888777665 11112222221
Q ss_pred HHH--HHHhcCCHHHHHHHHHHhhh
Q 003913 477 YLE--SLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 477 li~--~~~~~g~~~~A~~l~~~m~~ 499 (787)
... .+...|++.+|-+.|-+...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 111 22335778887777766543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.84 E-value=69 Score=36.40 Aligned_cols=181 Identities=17% Similarity=0.073 Sum_probs=112.7
Q ss_pred hHHHHHHHHHHHHHcCCccCHHHHHHHHHHhh-hccCCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcC
Q 003913 275 YLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHS-YQDNIDKERISLLKKEMQQ-------AGFEEGKEVLLSVLRVCAKEG 346 (787)
Q Consensus 275 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~~~g~~~~a~~l~~~m~~-------~g~~p~~~t~~~li~~~~~~g 346 (787)
....|.+.++...+.|..-... ...++...+ +....+.+.|+..|+.+.+ .| +.....-+-.+|.+..
T Consensus 227 ~~~~a~~~~~~~a~~g~~~a~~-~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGHSEAQY-ALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhhHHHHHHHHHHhhcchHHHH-HHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Confidence 3678999999998888643222 223333344 7788899999999998877 55 3334556666666643
Q ss_pred -----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcC
Q 003913 347 -----DVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKI---GEFMKSLEIFREMQERLGSASVPAYHKIIELL--CKAE 416 (787)
Q Consensus 347 -----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~--~~~g 416 (787)
+.+.|..++...-+.|. |+.... +...|... .+...|.++|...-..|..+ ..-+.+++-.. ....
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g~-~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELGN-PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGVER 378 (552)
T ss_pred CCccccHHHHHHHHHHHHhcCC-chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCcCC
Confidence 66779999998888884 333332 33333332 35789999999998887542 22222222111 1234
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003913 417 ETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE 465 (787)
Q Consensus 417 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 465 (787)
+...|..++.+..+.| .|-..--...+..+.. +..+.+.-.+..+.+
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE 425 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH
Confidence 7788999999998888 4332222333334444 666666666665554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.42 E-value=40 Score=33.28 Aligned_cols=171 Identities=15% Similarity=0.075 Sum_probs=96.6
Q ss_pred HHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhc---
Q 003913 342 CAKEGDVEDAEKTWLRLLESDNG--IPTPAFVYKMEAYAKIGEFMKSLEIFREMQER-LGSASVPAYHKIIELLCKA--- 415 (787)
Q Consensus 342 ~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~--- 415 (787)
-.+.|++++|.+.|+.+....+- -...+--.++-++-+.+++++|+..+++.... +-.|| .-|..-|.+++.-
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccC
Confidence 34679999999999999876432 12445556788889999999999999998765 33333 3344445555432
Q ss_pred ----CChHH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH-H-HHHHHHHHhcCC
Q 003913 416 ----EETEL---TESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTI-Y-GIYLESLKNAGN 486 (787)
Q Consensus 416 ----g~~~~---A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~-~-~~li~~~~~~g~ 486 (787)
.+... |..-|+++++. -||. .-..+|......+.. ... + ..+..-|.+.|.
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~r--yPnS-------------~Ya~dA~~~i~~~~d-----~LA~~Em~IaryY~kr~~ 182 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQR--YPNS-------------RYAPDAKARIVKLND-----ALAGHEMAIARYYLKRGA 182 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHH--CCCC-------------cchhhHHHHHHHHHH-----HHHHHHHHHHHHHHHhcC
Confidence 23333 34444444432 2321 111122222111111 001 1 123466677777
Q ss_pred HHHHHHHHHHhhhCCCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 487 IEKAEEIFNHMHSDQTIGVNT---RSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 487 ~~~A~~l~~~m~~~~~~~p~~---~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+..|..-+++|.+.- +-.. ...-.|..+|.+.|..++|.+.-.-+..
T Consensus 183 ~~AA~nR~~~v~e~y--~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 183 YVAAINRFEEVLENY--PDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred hHHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 777777777777652 2222 3444555677777777777766655543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=85.22 E-value=50 Score=34.20 Aligned_cols=202 Identities=12% Similarity=0.098 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-cCCCCC---HH
Q 003913 333 EVLLSVLRVCAKEGDVEDAEKTWLRLLES--DNG---IPTPAFVYKMEAYAKIGEFMKSLEIFREMQE-RLGSAS---VP 403 (787)
Q Consensus 333 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~---~~ 403 (787)
.+|..+..+.+..|.++++...--.-.+. ... .-...|-.+..++-+.-++.+++.+-..-.. .|..|. -.
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 46667777788888877766532211111 000 0112333444444444444444444333221 233221 12
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCHHH
Q 003913 404 AYHKIIELLCKAEETELTESLMKEFVETGMK-----PLMPSYINLTNMYLNLGMHDRLHLAFSECLE-----KCRPNRTI 473 (787)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~p~~~~ 473 (787)
...+|..++...+.++++++.|+...+---. ....+|..|...|.+..++++|.-...+..+ +...-..-
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 3344667777788899999999887762111 1246788999999999999998877766554 22222223
Q ss_pred HHH-----HHHHHHhcCCHHHHHHHHHHhhh----CCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 474 YGI-----YLESLKNAGNIEKAEEIFNHMHS----DQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 474 ~~~-----li~~~~~~g~~~~A~~l~~~m~~----~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
|.. |.-+|-..|++..|.+..++..+ .|.-.........+.+.|...|+.+.|..-|+...
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 333 34466778888888888777543 44111123445577788999999999888777654
|
|
| >PF14528 LAGLIDADG_3: LAGLIDADG-like domain; PDB: 2CW7_A 2CW8_A 2VS8_F 2VS7_G 1B24_A 1DQ3_A 2DCH_X | Back alignment and domain information |
|---|
Probab=84.96 E-value=2.9 Score=32.92 Aligned_cols=61 Identities=18% Similarity=0.131 Sum_probs=39.7
Q ss_pred hcCCcccCCCc----EEEEccCCHHHHHHHHHHHhhCCCceEEE---ecCcEEEEEEeCCchHHHHHhc
Q 003913 680 MYGGHRTSVGD----ILLKLKVSSEGIALVFKTLKARSLDCRVK---KKGRVFWIGFLGSNSTLFWKLI 741 (787)
Q Consensus 680 m~~g~~~~~g~----~~~~~~g~~~e~~~l~~~l~~~gl~~~~~---~~~~~~~i~~~~~~~~~~~~lv 741 (787)
..||+....+. +.+++ .+.+=+..+...|..-||.+++. +.+..|++.|..++..+|.+.|
T Consensus 9 d~DG~v~~~~~~~~~i~~~~-~s~~ll~~v~~lL~~lGi~~~i~~~~~~~~~y~l~i~~~~~~~f~~~I 76 (77)
T PF14528_consen 9 DGDGSVSKNRRKSVRISISS-KSKELLEDVQKLLLRLGIKASIYEKKRKKGSYRLRISGKSLKRFLEKI 76 (77)
T ss_dssp HHHEEEECCSECEEEEEEEE-S-HHHHHHHHHHHHHTT--EEEEEEECTTTEEEEEEECHHHHHHHHHT
T ss_pred cCCccEECCCCcEEEEEEEE-CCHHHHHHHHHHHHHCCCeeEEEEEcCCCceEEEEECchHHHHHHHHh
Confidence 34555544442 33333 56666666666677669999997 4455799999999999998876
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=84.89 E-value=5.9 Score=32.33 Aligned_cols=61 Identities=10% Similarity=0.050 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003913 419 ELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLE 479 (787)
Q Consensus 419 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~ 479 (787)
-++.+-++.+....+.|++.+..+.+++|-+.+++..|.++|+.+...+..+...|..+++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 3455556666666777888888888888888888888888887776555445556666554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=84.57 E-value=52 Score=37.93 Aligned_cols=217 Identities=14% Similarity=0.109 Sum_probs=90.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHc---CChH
Q 003913 309 DNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDN-GIPTPAFVYKMEAYAKI---GEFM 384 (787)
Q Consensus 309 ~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~---g~~~ 384 (787)
-.|+++.|.+.+-+ ..+...|.+.+...+.-|. -+......-..+..... .|...-+..||..|++. .+..
T Consensus 270 LtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~g---LL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~td~~ 344 (613)
T PF04097_consen 270 LTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYG---LLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEITDPR 344 (613)
T ss_dssp HTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTTT-HH
T ss_pred HHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcC---CCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhccCHH
Confidence 35667777777655 2233334444444444332 22222221122322211 11124567789999884 5677
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHcC---------------CC-CCHHHH---HHHH
Q 003913 385 KSLEIFREMQERLGSASVPAYHKIIE-LLCKAEETELTESLMKEFVETG---------------MK-PLMPSY---INLT 444 (787)
Q Consensus 385 ~A~~~~~~m~~~g~~p~~~t~~~li~-~~~~~g~~~~A~~l~~~m~~~g---------------~~-p~~~t~---~~li 444 (787)
+|.++|--+....-+.....+...+. .....++++ .++..+...| +. +..... ....
T Consensus 345 ~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~---~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~A 421 (613)
T PF04097_consen 345 EALQYLYLICLFKDPEQRNLFHECLRELVLETREFD---LLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQAA 421 (613)
T ss_dssp HHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HH---HHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHH---HHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHHH
Confidence 88888776654322111222222221 112222111 1221111111 22 122222 2233
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHhcCC-----------HHHHHHHHHHhhhCCC----C-CCCH
Q 003913 445 NMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLE-SLKNAGN-----------IEKAEEIFNHMHSDQT----I-GVNT 507 (787)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~-~~~~~g~-----------~~~A~~l~~~m~~~~~----~-~p~~ 507 (787)
.-+...|++++|..+|....+- ..-+...|.++. +...... ...|..+.+.....+. + +.+.
T Consensus 422 ~~~e~~g~~~dAi~Ly~La~~~-d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~ 500 (613)
T PF04097_consen 422 REAEERGRFEDAILLYHLAEEY-DKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRKNR 500 (613)
T ss_dssp HHHHHCT-HHHHHHHHHHTT-H-HHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHHHH
Confidence 4456678888888888765420 001112232222 2222222 4556666665544321 1 2234
Q ss_pred HHHHHHHHH-----HHcCCCHHHHHHHHHHHH
Q 003913 508 RSCNIILSA-----YLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 508 ~t~~~li~~-----~~~~g~~~~A~~~~~~m~ 534 (787)
.|+..|+.. +.++|++++|++.++++.
T Consensus 501 ~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 501 ETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 566666543 568999999999988775
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=84.03 E-value=28 Score=35.88 Aligned_cols=188 Identities=16% Similarity=0.099 Sum_probs=113.7
Q ss_pred CChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHH-------HHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003913 346 GDVEDAEKTWLRLLESD--NGIPTPAFVYKMEAYAKIGEFMKSLEIF-------REMQERLGSASVPAYHKIIELLCKAE 416 (787)
Q Consensus 346 g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~-------~~m~~~g~~p~~~t~~~li~~~~~~g 416 (787)
.+.++|...|.+.+.+- ..---.+|..+..+.+..|.+++++..- .+..+.. .-...|..+.+++-+..
T Consensus 20 ~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~--~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 20 NQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSD--FLLEAYLNLARSNEKLC 97 (518)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 44455555554443321 0012345667788888888888775532 2222210 01235556666666666
Q ss_pred ChHHHHHHHHHHHH-cCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCC----CHHHHHHHHHHHHhcCC
Q 003913 417 ETELTESLMKEFVE-TGMKP---LMPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRP----NRTIYGIYLESLKNAGN 486 (787)
Q Consensus 417 ~~~~A~~l~~~m~~-~g~~p---~~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p----~~~~~~~li~~~~~~g~ 486 (787)
++.+++.+-+.-.. .|..| -.....++..++...+.++++++.|+...+ .... ...+|-.|...|.+..+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 66666666554443 23333 124555677888888899999999999876 2222 34588999999999999
Q ss_pred HHHHHHHHHHhhhCC-CCC-CC------HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 487 IEKAEEIFNHMHSDQ-TIG-VN------TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 487 ~~~A~~l~~~m~~~~-~~~-p~------~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+++|.-+..+..+.- .+. -| ..+...|.-++...|....|.+.-++..+
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k 234 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK 234 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 999887776654320 011 11 12334556678888998888888887654
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.58 E-value=9.7 Score=38.30 Aligned_cols=99 Identities=9% Similarity=0.033 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003913 365 IPTPAFVYKMEAYAKIGEFMKSLEIFREMQER---LGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYI 441 (787)
Q Consensus 365 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 441 (787)
..+.+...++..-....+++.+...+-++... ...|+...+ +.++-| -.-++++++.++..=++.|+-||.++++
T Consensus 62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchhhHH
Confidence 34444445555555566777777777666532 112222221 223322 2235667777777777778888888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 003913 442 NLTNMYLNLGMHDRLHLAFSECLE 465 (787)
Q Consensus 442 ~li~~~~~~g~~~~a~~~~~~m~~ 465 (787)
.+|+.+.+.+++.+|.++.-.|..
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHH
Confidence 888888888887777777666654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.52 E-value=89 Score=35.73 Aligned_cols=310 Identities=12% Similarity=0.081 Sum_probs=176.7
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003913 184 TKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRA 263 (787)
Q Consensus 184 ~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~ 263 (787)
..+|+-+...+.+..|+++-..+...-.. +...|.....-+... ..-.-+++++..++=... ...|. ++|..+-.-
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~-~d~~d~~vld~I~~kls~-~~~~~-iSy~~iA~~ 516 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQ-SDKMDEEVLDKIDEKLSA-KLTPG-ISYAAIARR 516 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhc-cCccchHHHHHHHHHhcc-cCCCc-eeHHHHHHH
Confidence 45788888999999999998888654222 245666666666631 122234444444443332 23444 445554444
Q ss_pred HHcCCCCCChhhHHHHHHHHHHHHHcCCcc----CHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003913 264 LVSKPGGLSKYYLQQAEFIFHNLLTSGLEI----QKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVL 339 (787)
Q Consensus 264 ~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li 339 (787)
.... |+.+.|..+++.=...+... +..-+... +.-....|+.+-...++..|... .+...|...+
T Consensus 517 Ay~~------GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~A--L~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l 585 (829)
T KOG2280|consen 517 AYQE------GRFELARKLLELEPRSGEQVPLLLKMKDSSLA--LKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL 585 (829)
T ss_pred HHhc------CcHHHHHHHHhcCCCccchhHHHhccchHHHH--HHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH
Confidence 4443 68999988886433222110 01111122 24556778888877777776653 1222232222
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-H-----HHcCCCCCHHHHHHHHHHHH
Q 003913 340 RVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFRE-M-----QERLGSASVPAYHKIIELLC 413 (787)
Q Consensus 340 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m-----~~~g~~p~~~t~~~li~~~~ 413 (787)
.+.-.|..+|.+..+.. |..+ +-+.|-+ ++-.++...|.. - ...|..|+..+ ...++.
T Consensus 586 ------~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~---~a~~~a 649 (829)
T KOG2280|consen 586 ------RNQPLALSLYRQFMRHQ---DRAT---LYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPALKT---AANAFA 649 (829)
T ss_pred ------HhchhhhHHHHHHHHhh---chhh---hhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchhHHH---HHHHHh
Confidence 34556777777665532 1111 1222222 222222222211 0 01233344332 334444
Q ss_pred hcCChH---HH-------HHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003913 414 KAEETE---LT-------ESLMKEFVE-TGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLK 482 (787)
Q Consensus 414 ~~g~~~---~A-------~~l~~~m~~-~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~ 482 (787)
+..... +| +.+.+.+.. .|....--+.+--+.-+...|+..+|.++-.+.. -||-..|--=+.+++
T Consensus 650 ~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk---ipdKr~~wLk~~aLa 726 (829)
T KOG2280|consen 650 KSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK---IPDKRLWWLKLTALA 726 (829)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC---CcchhhHHHHHHHHH
Confidence 443311 11 122222222 2334444566666777888999999999887765 789999999999999
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 483 NAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 483 ~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
..+++++-+++-+.+.. +.-|.-.+.+|.+.|+.++|.+++.+..
T Consensus 727 ~~~kweeLekfAkskks-------PIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 727 DIKKWEELEKFAKSKKS-------PIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred hhhhHHHHHHHHhccCC-------CCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 99999987777666542 3456677889999999999999999875
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=83.12 E-value=39 Score=31.24 Aligned_cols=131 Identities=11% Similarity=0.132 Sum_probs=64.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 003913 318 LLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERL 397 (787)
Q Consensus 318 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 397 (787)
+..+.+.+.|+.|+...+..+++.+.+.|++..-. .+.+.++-+|.......+-.+. +....+.++=-+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 45555556667777777777777777777655433 3334444444444333322222 2333344444444432
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003913 398 GSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462 (787)
Q Consensus 398 ~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (787)
=...+..++..+...|++-+|.++.+...... ......++.+..+.++...-..+|+-
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~f 145 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRF 145 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 01134455666667777777766665542211 11223455555555554443333333
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.85 E-value=25 Score=33.13 Aligned_cols=94 Identities=16% Similarity=0.150 Sum_probs=64.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc
Q 003913 445 NMYLNLGMHDRLHLAFSECLEKCRPNR-----TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS 519 (787)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~m~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~ 519 (787)
+-+.+.|++++|..-|...++.|++.. +.|..-..++.+.+.++.|++-..+.++.+ +........-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHh
Confidence 345667777777777777777665543 345555667778888888888888888765 2222333333457788
Q ss_pred CCCHHHHHHHHHHHHHcCCccCHHH
Q 003913 520 SGDFVKAEKIYDLMCLKKYEIESAW 544 (787)
Q Consensus 520 ~g~~~~A~~~~~~m~~~g~~~~p~~ 544 (787)
...+++|+.=|..+++ .+|..
T Consensus 181 ~ek~eealeDyKki~E----~dPs~ 201 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILE----SDPSR 201 (271)
T ss_pred hhhHHHHHHHHHHHHH----hCcch
Confidence 8888888888888887 56653
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.44 E-value=95 Score=35.30 Aligned_cols=191 Identities=15% Similarity=0.121 Sum_probs=107.3
Q ss_pred hhHHHHHHHHHHhcCCCccCHHHHHHHHHH-HHccCChhHHHHHHHHHHH-------CCCCCCHhHHHHHHHHHhcCC-c
Q 003913 160 NETGFRVYEWMMQQHWYRFDFALATKLADY-MGKERKFAKCRDIFDDIIN-------QGRVPSEMTFHILIVAYLSAP-V 230 (787)
Q Consensus 160 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~f~~m~~-------~g~~pd~~ty~~li~~~~~~~-~ 230 (787)
...|.+.++...+.|....-.........+ ++...+++.|...|....+ .| +....+-+-..|.... -
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 567999999999988332222222233333 4567899999999999877 55 3445666666676210 0
Q ss_pred CC-CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhcc
Q 003913 231 QG-CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQD 309 (787)
Q Consensus 231 ~g-~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 309 (787)
.. +.+.|+.+|.+.-.. | .|+....-..+.-. |. ...+...|.+.|....+.|..+ ...+-.+....+..-
T Consensus 305 ~~~d~~~A~~~~~~aA~~-g-~~~a~~~lg~~~~~----g~-~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAEL-G-NPDAQYLLGVLYET----GT-KERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGV 376 (552)
T ss_pred ccccHHHHHHHHHHHHhc-C-CchHHHHHHHHHHc----CC-ccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCc
Confidence 22 678899999988775 2 45544332222221 21 1136789999999998888642 111111111122223
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 003913 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDN 363 (787)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 363 (787)
..+...|...+++..+.| .|-..--...+..+.. ++.+.+.-.+..+.+.|.
T Consensus 377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 445666777777666666 2222222223333333 566666655555555553
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=82.37 E-value=39 Score=30.82 Aligned_cols=93 Identities=10% Similarity=-0.076 Sum_probs=53.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 003913 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKA 526 (787)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A 526 (787)
-.+.++.+++..++..+.---+-....-..-...+.+.|++.+|+.+|+++.+.. |......+|+..|.....-..=
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~---~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA---PGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC---CCChHHHHHHHHHHHHcCChHH
Confidence 3455677777777777654212222222333445677888889999888887764 4545555666655554443444
Q ss_pred HHHHHHHHHcCCccCHHH
Q 003913 527 EKIYDLMCLKKYEIESAW 544 (787)
Q Consensus 527 ~~~~~~m~~~g~~~~p~~ 544 (787)
..+-+++.+.+ .+|+.
T Consensus 97 r~~A~evle~~--~d~~a 112 (160)
T PF09613_consen 97 RRYADEVLESG--ADPDA 112 (160)
T ss_pred HHHHHHHHhcC--CChHH
Confidence 44555566544 45553
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.46 E-value=94 Score=34.59 Aligned_cols=83 Identities=14% Similarity=0.173 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHH
Q 003913 160 NETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACS 239 (787)
Q Consensus 160 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~ 239 (787)
.+.+..++..+... +|.-...|-.....=.+.|..+.+.++|++-.. |+.-++..|...+.-++. ..|+.+....
T Consensus 61 ~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n--~~~d~~~lr~ 135 (577)
T KOG1258|consen 61 VDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKN--NNGDPETLRD 135 (577)
T ss_pred HHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhc--cCCCHHHHHH
Confidence 34555555555543 233333445555555566777777777776654 344455566666665554 4566666666
Q ss_pred HHHHHHHh
Q 003913 240 IYNRMIQL 247 (787)
Q Consensus 240 l~~~m~~~ 247 (787)
+|+.....
T Consensus 136 ~fe~A~~~ 143 (577)
T KOG1258|consen 136 LFERAKSY 143 (577)
T ss_pred HHHHHHHh
Confidence 66666654
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.42 E-value=13 Score=37.49 Aligned_cols=103 Identities=14% Similarity=0.102 Sum_probs=76.0
Q ss_pred CccCHHHHHHHHHHHHccCChhHHHHHHHHHHHC---CCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCC
Q 003913 176 YRFDFALATKLADYMGKERKFAKCRDIFDDIINQ---GRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQP 252 (787)
Q Consensus 176 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p 252 (787)
.+..+.+-..++..-....++++|...+-+++.. ...|+. +-.+.++-+. .-+.++++.++..=++- |+-|
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll----ky~pq~~i~~l~npIqY-GiF~ 133 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL----KYDPQKAIYTLVNPIQY-GIFP 133 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH----ccChHHHHHHHhCcchh-cccc
Confidence 4556666677777777788899999988887764 122332 2334455554 45677999998888875 8999
Q ss_pred CHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcC
Q 003913 253 RPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG 290 (787)
Q Consensus 253 d~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~ 290 (787)
|.++++.+|+.+.+. +++.+|.++.-.|+...
T Consensus 134 dqf~~c~l~D~flk~------~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKK------ENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhc------ccHHHHHHHHHHHHHHH
Confidence 999999999999987 68999888887776554
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=80.79 E-value=18 Score=29.90 Aligned_cols=60 Identities=10% Similarity=0.057 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003913 420 LTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLE 479 (787)
Q Consensus 420 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~ 479 (787)
+..+-+..+....+.|.+.+..+.+++|-+.+++..|.++|+.+...+.+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 445555566666778888888888888888888888888888877655544446666654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=80.56 E-value=4.3 Score=41.11 Aligned_cols=81 Identities=12% Similarity=-0.009 Sum_probs=59.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHH
Q 003913 445 NMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFV 524 (787)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 524 (787)
+-|.+.|.+++|+..|...+.-.+-|.++|..-..+|.+..++..|+.-.+..+..+ ...+.+|++.+...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd---------~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD---------KLYVKAYSRRMQAR 175 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh---------HHHHHHHHHHHHHH
Confidence 569999999999999988776555588999999999999999998888887777653 12356666665554
Q ss_pred HHHHHHHHHH
Q 003913 525 KAEKIYDLMC 534 (787)
Q Consensus 525 ~A~~~~~~m~ 534 (787)
+++....+..
T Consensus 176 ~~Lg~~~EAK 185 (536)
T KOG4648|consen 176 ESLGNNMEAK 185 (536)
T ss_pred HHHhhHHHHH
Confidence 4444444443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=80.40 E-value=3.5 Score=25.99 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=14.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 509 SCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 509 t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.|..+...|.+.|++++|++.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.37 E-value=47 Score=32.26 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=12.7
Q ss_pred HcCCCHHHHHHHHHHHHHc
Q 003913 518 LSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~~ 536 (787)
...+++.+|+++|++....
T Consensus 165 a~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 787 | ||||
| 3oor_A | 237 | I-Scei Mutant (K86rG100T)COMPLEXED WITH CG+4 DNA SU | 7e-07 | ||
| 1r7m_A | 235 | The Homing Endonuclease I-Scei Bound To Its Dna Rec | 8e-07 | ||
| 3ool_A | 237 | I-Scei Complexed With CG+4 DNA SUBSTRATE Length = 2 | 8e-07 |
| >pdb|3OOR|A Chain A, I-Scei Mutant (K86rG100T)COMPLEXED WITH CG+4 DNA SUBSTRATE Length = 237 | Back alignment and structure |
|
| >pdb|1R7M|A Chain A, The Homing Endonuclease I-Scei Bound To Its Dna Recognition Region Length = 235 | Back alignment and structure |
|
| >pdb|3OOL|A Chain A, I-Scei Complexed With CG+4 DNA SUBSTRATE Length = 237 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3c0w_A Intron-encoded endonuclease I-SCEI; endonuclease, homing, ladlidadg, catalytic mechanism, metal binding; HET: DNA; 2.20A {Saccharomyces cerevisiae} PDB: 1r7m_A* 3c0x_A* 3ool_A 3oor_A Length = 235 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 2e-38
Identities = 54/215 (25%), Positives = 93/215 (43%), Gaps = 21/215 (9%)
Query: 552 LSLNRKEVK--KPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSV 609
L N K +K K + L+ EQ E IGL+LG I S ++ K + ++F++ +
Sbjct: 12 LGPNSKLLKEYKSQLIELNIEQFEAGIGLILGDAYIRSRDEGKTYCMQFEWK-----NKA 66
Query: 610 LRRYLYDQYHEWLHPSFKVSD-----GNDDIPYKYSTISHPYFCFYADKFWPKGRLVIPK 664
++ Y +W+ + GN I + T H F A+ F + IP
Sbjct: 67 YMDHVCLLYDQWVLSPPHKKERVNHLGNLVITWGAQTFKHQAFNKLANLFIVNNKKTIPN 126
Query: 665 -LIHRWLTPRALAYWFMYGGHRTSVGDILLKLKV-------SSEGIALVFKTLKAR-SLD 715
L+ +LTP +LAYWFM G + + + E + + K L+ + L+
Sbjct: 127 NLVENYLTPMSLAYWFMDDGGKWDYNKNSTNKSIVLNTQSFTFEEVEYLVKGLRNKFQLN 186
Query: 716 CRVKKKGRVFWIGFLGSNSTLFWKLIEPYVLDELK 750
C VK I + +F+ LI+PY++ ++
Sbjct: 187 CYVKINKNKPIIYIDSMSYLIFYNLIKPYLIPQMM 221
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 1e-11
Identities = 84/623 (13%), Positives = 183/623 (29%), Gaps = 203/623 (32%)
Query: 62 SQEEKWDMFKNSDAESGS-VDFDVGTAGSEMRHLGEPVVE--VIELEELPEQWRRAKLAW 118
S+EE + + DA SG+ F + E +V+ V E+ + ++ + +
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWT------LLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 119 LCKELPS-------------HKGGTLVRILNAQ--------KKWLRQ-EDGTYLAVHCM- 155
++ PS + + N ++ L + + + +
Sbjct: 101 EQRQ-PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 156 --------------RIRENETGFRVYEW--------------MMQQHWYRFDF------- 180
+ + F+++ W M+Q+ Y+ D
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 181 ----------ALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFH--ILIVAYLSA 228
++ +L + K + + C + ++ N + + IL+
Sbjct: 219 HSSNIKLRIHSIQAELRRLL-KSKPYENCLLVLLNVQNA-KAWNAFNLSCKILLTTR-FK 275
Query: 229 PVQGCLDEACSIYNRMIQL-GGYQPRPSLHNSLF-RALVSKPGGLSKYYLQQAEFIFHNL 286
V L A + + + P SL + L +P L + + +
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVK--SLLLKYLDCRPQDLPR----EVLTT-NPR 328
Query: 287 LTS--GLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAK 344
S I+ + W + N DK L +++
Sbjct: 329 RLSIIAESIRDGL---ATWDNWKHVNCDK---------------------LTTIIESS-- 362
Query: 345 EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPA 404
L +LE Y+ + + L +F SA +P
Sbjct: 363 -----------LNVLEPAE--------YR-KMF-------DRLSVFPP------SAHIPT 389
Query: 405 YHKIIELLCKAEETELTESLMKEFVETGM--KPLMPSYINLTNMYLNLGMHDR----LHL 458
++ L+ ++ + + + K S I++ ++YL L + LH
Sbjct: 390 --ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 459 AFSEC--LEKCRPNRTIYGIYLES---------LKNAGNIEKAEEIFNHMHSD-----QT 502
+ + + K + + YL+ LKN + E+ F + D Q
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL-FRMVFLDFRFLEQK 506
Query: 503 IGVNTRSCNIILS------------AYLSSGDFVKAEKIYDLMC-LKKYE---------- 539
I ++ + N S Y+ D + ++ L K E
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Query: 540 -IESAWMEKLDYVLSLNRKEVKK 561
+ A M + + + K+V++
Sbjct: 567 LLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 2e-10
Identities = 89/623 (14%), Positives = 166/623 (26%), Gaps = 194/623 (31%)
Query: 284 HNLLTSGLEIQ---KDIYSGLIWLHSYQDNI----------DKERISLLKKE----MQQA 326
H++ E Q KDI L ++D D + L K+E +
Sbjct: 5 HHMDFETGEHQYQYKDI------LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK 58
Query: 327 GFEEGKEVLLSVLRVCAKE------GDVEDAEKTWL--RL-------------------- 358
G L L +E +V +L +
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 359 LESDNGIPTPAFVYKMEAYAKIGEFMKSL------------------------------- 387
L +DN + V +++ Y K+ + + L
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 388 ----EIF-------------REMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVE 430
+IF EM ++L ++I + L ++
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKL-------LYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 431 TGMKPLM--PSYIN----LTNMYLNLGMHDRLHL-AFSECLEKCR--------------P 469
++ L+ Y N L N+ + AF+ C+
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQ------NAKAWNAFN---LSCKILLTTRFKQVTDFLS 282
Query: 470 NRTIYGIYLESLKNAGNIEKAEEIF----NHMHSD---QTIGVNTRSCNII---LSAYLS 519
T I L+ ++ + + + D + + N R +II + L+
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 520 SGDFVKAEKIYDL-----MCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSL------NLS 568
+ D K L L +E A K+ LS+ P L ++
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLN--VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 569 SEQRENLIGLLLGGLCIESDEKRKR---HMI----RFQFNENSRMH-SVLRRYLYDQYHE 620
++ L +E K I + + +H S++ Y + +
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 621 WLHPSFKVSDGNDDIPYKYSTIS-HPYFCFYADKFWPKGRLVIPKLI--HRWLTPRALAY 677
D Y YS I H + ++ + + R+L + + +
Sbjct: 461 SDDLIPPYLDQ-----YFYSHIGHHLKNIEHPERM-----TLFRMVFLDFRFLE-QKIRH 509
Query: 678 WFMYGGHRTSVGDILLKLKVSSEGIALVFKTLKARSLDCRVKKKGRVFWIGFLGSNSTLF 737
S+ + L +LK I + V + FL
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYI-----CDNDPKYERLVNA-----ILDFLPKIEE-- 557
Query: 738 WKLIEPYVLDELKEDLLNEGSEY 760
LI D L+ L+ E
Sbjct: 558 -NLICSKYTDLLRIALMAEDEAI 579
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 6e-09
Identities = 47/322 (14%), Positives = 97/322 (30%), Gaps = 102/322 (31%)
Query: 495 NHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSL 554
+H H D G + ILS + FV + C +++ + +LS
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFED--AFVD-----NFDC---KDVQ----DMPKSILS- 47
Query: 555 NRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYL 614
++E+ + + L LL K++ + +F + VLR
Sbjct: 48 -KEEIDHIIMSKDAVSGTLRLFWTLL--------SKQEEMVQKF-------VEEVLR--- 88
Query: 615 YDQYHEWLHPSFKVSDGNDDIPYKYSTISHPYFCFYADKFWPKGRLVIPKLIHRWLTPRA 674
Y ++L K + + + D+ + ++ + R
Sbjct: 89 -INY-KFLMSPIKTEQRQPSMMTRM-------YIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 675 LAYWFMYGGHRTSVGDILLKLK----VSSEGIA------LVFKTLKARSLDCRVKKKGRV 724
L R + LL+L+ V +G+ + + + C K ++
Sbjct: 140 L---------RQA----LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC--KMDFKI 184
Query: 725 FWIGFLGSNS---------TLFWKLI------------EPYVLDELKEDL--LNEGSEYR 761
FW+ NS L +++ + ++ +L L + Y
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 762 K----LD----TQNIN-FD--C 772
L + N F+ C
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSC 266
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.4 bits (121), Expect = 1e-06
Identities = 20/206 (9%), Positives = 65/206 (31%), Gaps = 5/206 (2%)
Query: 303 WLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRL---L 359
L + + + QA ++ LL+ + C + A +
Sbjct: 98 LLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR 157
Query: 360 ESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAE-ET 418
+ + + M +A+ G F + + + +++ + + +Y ++ + + + +
Sbjct: 158 QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217
Query: 419 ELTESLMKEFVETGMKPLMPSY-INLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIY 477
E +++ + G+K + L+ + + + L P
Sbjct: 218 GTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKL 277
Query: 478 LESLKNAGNIEKAEEIFNHMHSDQTI 503
L + ++ + + Q +
Sbjct: 278 LRDVYAKDGRVSYPKLHLPLKTLQCL 303
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 787 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 3c0w_A | 235 | Intron-encoded endonuclease I-SCEI; endonuclease, | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.88 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.87 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.83 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.83 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.79 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.78 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.77 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.76 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.74 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.73 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.71 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.71 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.71 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.69 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.68 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.68 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.66 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.66 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.66 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.66 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.65 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.64 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.64 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.63 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.61 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.61 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.58 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.55 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.53 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.52 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.51 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.49 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.48 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.46 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.46 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.45 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.45 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.44 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.43 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.43 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.42 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.41 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.41 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.41 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.4 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.38 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.37 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.34 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.33 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.29 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.28 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.27 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.25 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.24 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.24 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.24 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.23 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.23 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.23 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.21 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.21 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.21 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.18 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.17 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.16 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.14 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.12 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.12 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.11 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.1 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.09 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.05 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.05 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.99 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.96 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.95 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.94 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.94 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.92 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.87 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.79 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.79 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.78 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.76 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.75 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.75 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.74 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.73 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.71 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.7 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.67 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.66 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.65 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.64 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.63 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.63 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.63 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.62 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.62 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.6 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.6 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.6 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.56 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.53 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.52 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.52 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.52 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.49 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.49 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.48 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.48 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.45 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.45 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.44 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.41 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.39 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.38 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.38 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.35 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.35 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.34 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.29 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.28 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.28 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.28 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.28 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.27 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.27 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.25 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.25 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.24 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.24 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.23 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.23 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.23 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.22 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.22 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.2 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.18 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.18 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.17 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.15 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.15 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.14 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.14 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.13 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.12 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.1 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.06 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.06 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.05 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.05 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.04 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.03 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.02 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.02 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.0 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.0 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.97 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.96 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.95 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.94 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.87 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.87 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.84 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.82 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.8 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.8 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.8 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.79 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.79 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.76 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.73 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.72 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.72 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.71 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.7 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.67 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.62 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.62 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.61 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.57 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.49 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.48 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.47 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.43 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.38 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.3 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.27 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.26 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.25 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.24 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.22 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.08 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.03 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.01 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.9 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.86 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.81 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.3 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.09 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.02 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.84 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.8 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.76 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.66 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.42 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.37 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.24 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.13 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.75 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.72 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.66 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.59 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.26 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.0 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 92.55 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 92.46 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.17 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 91.77 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 90.9 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 90.67 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.6 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.49 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 88.38 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 88.03 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 87.32 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 87.1 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 84.23 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 83.73 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 83.17 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 81.9 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=340.26 Aligned_cols=471 Identities=9% Similarity=-0.022 Sum_probs=283.8
Q ss_pred HHHHHhhccCCCcchhhHHHHHHhhccccCCcchHHHHH--HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHH
Q 003913 114 AKLAWLCKELPSHKGGTLVRILNAQKKWLRQEDGTYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMG 191 (787)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~~~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 191 (787)
.++..+.+.+....+..+++.+.. ..|+..++..+ .|.+.|++++|..+|+.+... +++..+++.++.+|.
T Consensus 89 ~~~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 89 LWRHDALMQQQYKCAAFVGEKVLD----ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLV 161 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHH
T ss_pred HHHHHHHHccCchHHHHHHHHHHh----hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHH
Confidence 456666677777777776665542 45676666665 888999999999999988653 678999999999999
Q ss_pred ccCChhHHHHHHHH-HHHC--------------CCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHH
Q 003913 192 KERKFAKCRDIFDD-IINQ--------------GRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSL 256 (787)
Q Consensus 192 ~~g~~~~A~~~f~~-m~~~--------------g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t 256 (787)
+.|++++|+++|++ ++.. |..++..+|+.++.+|. +.|++++|+++|++|.+. .|+...
T Consensus 162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~---~p~~~~ 235 (597)
T 2xpi_A 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYT---NLSNFDRAKECYKEALMV---DAKCYE 235 (597)
T ss_dssp HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH---CTTCHH
T ss_pred HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh---CchhhH
Confidence 99999999999995 3332 23446899999999999 899999999999999985 355433
Q ss_pred -HHHHHHHHHcCCCCCChhhHHHHHHH-HHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHH
Q 003913 257 -HNSLFRALVSKPGGLSKYYLQQAEFI-FHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEV 334 (787)
Q Consensus 257 -~~~ll~~~~~~~~~~~~g~~~~A~~~-~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t 334 (787)
+..+...+... + .+....+..+ +..+...+..+...+|..++ ..|.+.|++++|.++|++|.+. .++..+
T Consensus 236 ~~~~l~~~~~~~-~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 307 (597)
T 2xpi_A 236 AFDQLVSNHLLT-A---DEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL--NKTSHEDELRRAEDYLSSINGL--EKSSDL 307 (597)
T ss_dssp HHHHHHHTTCSC-H---HHHHHHHHHSCTHHHHGGGHHHHHHHHHTTS--CTTTTHHHHHHHHHHHHTSTTG--GGCHHH
T ss_pred HHHHHHHhhccc-c---hhHHHHHHhcCCcccccchHHHHHHHHHHHH--HHHcCcchHHHHHHHHHHhhcC--CchHHH
Confidence 33332222111 0 0111111111 33333333333333333333 5555556666666666655543 355566
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003913 335 LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCK 414 (787)
Q Consensus 335 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 414 (787)
++.++.+|.+.|++++|.++|+++.+.++. +..+|+.++.+|.+.|++++|.++|++|.+. .+.+..+|+.++.+|.+
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 385 (597)
T 2xpi_A 308 LLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLC 385 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHH
Confidence 666666666666666666666666555432 4455566666666666666666666666543 22345556666666666
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003913 415 AEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIF 494 (787)
Q Consensus 415 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 494 (787)
.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+..+.+..+|+.++.+|.+.|++++|.++|
T Consensus 386 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (597)
T 2xpi_A 386 VNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYL 464 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666666665532 2345566666666666666666666666665544455566666666666666666666666
Q ss_pred HHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC--CccCHHHHHHHHHHHhhcccccccccccCCchHHH
Q 003913 495 NHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKK--YEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQR 572 (787)
Q Consensus 495 ~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~ 572 (787)
++|.+.. +.+..+|+.++.+|.+.|++++|+++|++|.+.. .+.+|+. .
T Consensus 465 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~---------------------------~ 515 (597)
T 2xpi_A 465 QSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP---------------------------W 515 (597)
T ss_dssp HHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG---------------------------G
T ss_pred HHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh---------------------------H
Confidence 6665543 3455566666666666666666666666665430 0112220 0
Q ss_pred HHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccccCCCCCcce
Q 003913 573 ENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPY 637 (787)
Q Consensus 573 ~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~ 637 (787)
..+|..++.+|...|++++|...++ +++.|+++..+..++.+|.+.|++++|...+.+..+..|.
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 3455555666666666666655555 4445555555666666666666666665555544444443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-36 Score=343.34 Aligned_cols=485 Identities=10% Similarity=0.001 Sum_probs=389.4
Q ss_pred cchHHHHH--HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 003913 145 EDGTYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILI 222 (787)
Q Consensus 145 ~~~t~~~~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li 222 (787)
+...+..+ .+.+.|++++|..+|+.|... .|+..++..++.+|.+.|++++|..+|+++... .++..+|+.++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 44444444 678999999999999999964 567789999999999999999999999998543 56899999999
Q ss_pred HHHhcCCcCCCHHHHHHHHHHHHHhC--------------CCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHH
Q 003913 223 VAYLSAPVQGCLDEACSIYNRMIQLG--------------GYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLT 288 (787)
Q Consensus 223 ~~~~~~~~~g~~~~A~~l~~~m~~~~--------------g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~ 288 (787)
.+|+ +.|++++|+++|+++.... |..++..+|+.+..++.+. |++++|.++|++|.+
T Consensus 158 ~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~ 228 (597)
T 2xpi_A 158 FCLV---KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL------SNFDRAKECYKEALM 228 (597)
T ss_dssp HHHH---HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHH
T ss_pred HHHH---HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHc------CCHHHHHHHHHHHHH
Confidence 9999 8999999999999643221 2345688999999999987 799999999999998
Q ss_pred cCCccCHHHHHHHHHHhhhccCCCHH--HHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 003913 289 SGLEIQKDIYSGLIWLHSYQDNIDKE--RISLL-KKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGI 365 (787)
Q Consensus 289 ~~~~p~~~~~~~li~~~~~~~~g~~~--~a~~l-~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 365 (787)
.+.. +...+..+. ..+...+..+ .+..+ +..+...+..+...+|+.++.+|.+.|++++|.++|+++.+. .+
T Consensus 229 ~~p~-~~~~~~~l~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~ 303 (597)
T 2xpi_A 229 VDAK-CYEAFDQLV--SNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EK 303 (597)
T ss_dssp HCTT-CHHHHHHHH--HTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GG
T ss_pred hCch-hhHHHHHHH--HhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--Cc
Confidence 7643 344555554 3333332222 22222 566666666667778888999999999999999999999876 46
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003913 366 PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTN 445 (787)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 445 (787)
+..+|+.++.+|.+.|++++|.++|++|.+.+. .+..+|+.++.+|.+.|++++|..+++++.+.. +.+..+++.++.
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 381 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGI 381 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence 899999999999999999999999999998753 378899999999999999999999999999754 567899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHH
Q 003913 446 MYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVK 525 (787)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~ 525 (787)
+|.+.|++++|.++|+++.+..+.+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..+|+.++.+|.+.|++++
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 459 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF--QGTHLPYLFLGMQHMQLGNILL 459 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--TTCSHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999998667789999999999999999999999999999875 5689999999999999999999
Q ss_pred HHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEEEEEccCC-
Q 003913 526 AEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENS- 604 (787)
Q Consensus 526 A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~p~~- 604 (787)
|.++|++|.+.. ..++..+..+..++.......+ -...+...+..... ...+|++
T Consensus 460 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~-----------A~~~~~~~~~~~~~------------~~~~p~~~ 515 (597)
T 2xpi_A 460 ANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQT-----------AINHFQNALLLVKK------------TQSNEKPW 515 (597)
T ss_dssp HHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH-----------HHHHHHHHHHHHHH------------SCCCSGGG
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHH-----------HHHHHHHHHHhhhc------------cccchhhH
Confidence 999999999743 2356665555554433221111 01222222222111 1234554
Q ss_pred cccHHHHHHHHHHchhhcCCCccccCCCCCcceEEeeeccchHHHHHHhhccCcccccccchhhcCChhHHHHH
Q 003913 605 RMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPYKYSTISHPYFCFYADKFWPKGRLVIPKLIHRWLTPRALAYW 678 (787)
Q Consensus 605 ~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~~~~t~~~~~~~~~~~g~~~~a~~~~~~mi~~gl~P~~lay~ 678 (787)
...+..++.+|.+.|++++|...+.+.....|....++...+..+...|.+++|.+.|.++++. .|+....+
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~ 587 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMAS 587 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHH
Confidence 6688999999999999999999998777777876778888888999999999999999999885 66544333
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-30 Score=285.16 Aligned_cols=216 Identities=11% Similarity=0.036 Sum_probs=179.5
Q ss_pred hHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhh
Q 003913 197 AKCRDIFDDIINQGRVPSE-MTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYY 275 (787)
Q Consensus 197 ~~A~~~f~~m~~~g~~pd~-~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~ 275 (787)
..+..+++++.++++.+.. ..++.+|.+|+ +.|++++|+++|++|.+. |+.||.+|||+||.+|++...
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~---k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~------ 76 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCS---KKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEA------ 76 (501)
T ss_dssp -----------------CHHHHHHHHHHHTT---TSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCC------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCc------
Confidence 4566777788877765543 46888999999 899999999999999987 899999999999999987421
Q ss_pred HHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003913 276 LQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTW 355 (787)
Q Consensus 276 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~ 355 (787)
. ....+.+..++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|
T Consensus 77 ~----------------------------~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 128 (501)
T 4g26_A 77 A----------------------------TESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMV 128 (501)
T ss_dssp C----------------------------SSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred h----------------------------hhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 0 122345557888899999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003913 356 LRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKP 435 (787)
Q Consensus 356 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 435 (787)
++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.+++++|++.|+.|
T Consensus 129 ~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p 208 (501)
T 4g26_A 129 KQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQV 208 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSB
T ss_pred HHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 003913 436 LMPSYINLTNMYLNL 450 (787)
Q Consensus 436 ~~~t~~~li~~~~~~ 450 (787)
+..||+.++..|+..
T Consensus 209 s~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 209 SKSTFDMIEEWFKSE 223 (501)
T ss_dssp CHHHHHHHHHHHHSH
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999998864
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=286.20 Aligned_cols=204 Identities=14% Similarity=0.205 Sum_probs=149.5
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---------hHH
Q 003913 316 ISLLKKEMQQAGFEEGK-EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE---------FMK 385 (787)
Q Consensus 316 a~~l~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---------~~~ 385 (787)
+..+.+++.+.++.+.. .+++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34455556555555443 34666677777777777777777777777777777777777777766554 577
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003913 386 SLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE 465 (787)
Q Consensus 386 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 465 (787)
|.++|++|...|+.||.+|||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred -cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcC
Q 003913 466 -KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSS 520 (787)
Q Consensus 466 -~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~ 520 (787)
|+.||..||++||.+|++.|++++|.++|++|.+.| +.|+..||+.++..|+..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g-~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV-RQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC-CCcCHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888888888 788888888888888764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-24 Score=230.59 Aligned_cols=358 Identities=14% Similarity=0.070 Sum_probs=312.6
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g 232 (787)
.+.+.|++++|.+.+..+.+.. +.+...+..+...+.+.|++++|...++...+.. +.+..+|..+...+. +.|
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~---~~g 81 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYK---ERG 81 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH---HHT
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHH---HCC
Confidence 4557899999999999998875 6677788888899999999999999999988764 347789999999999 899
Q ss_pred CHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCC
Q 003913 233 CLDEACSIYNRMIQLGGYQPRP-SLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNI 311 (787)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g 311 (787)
++++|++.|+++.+. .|+. .+|..+..++... |++++|...|+++++.++. +...+..+ ...+...|
T Consensus 82 ~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~p~-~~~~~~~l--~~~~~~~g 149 (388)
T 1w3b_A 82 QLQEAIEHYRHALRL---KPDFIDGYINLAAALVAA------GDMEGAVQAYVSALQYNPD-LYCVRSDL--GNLLKALG 149 (388)
T ss_dssp CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH------SCSSHHHHHHHHHHHHCTT-CTHHHHHH--HHHHHTTS
T ss_pred CHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCC-cHHHHHHH--HHHHHHcc
Confidence 999999999999974 4654 4688888888776 6999999999999887643 12233333 37788889
Q ss_pred CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 003913 312 DKERISLLKKEMQQAGFEE-GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIF 390 (787)
Q Consensus 312 ~~~~a~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 390 (787)
++++|.++|+++.+. .| +..+|..+...+.+.|++++|...|+++.+.++. +...|..+...+...|++++|...|
T Consensus 150 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~ 226 (388)
T 1w3b_A 150 RLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAY 226 (388)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999885 34 5778999999999999999999999999998754 6788999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003913 391 REMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN 470 (787)
Q Consensus 391 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~ 470 (787)
++..... +-+..+|..+..+|...|++++|...++++.+.. +.+..+|..+..+|.+.|++++|...|+++.+..+.+
T Consensus 227 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 304 (388)
T 1w3b_A 227 LRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc
Confidence 9998763 2367899999999999999999999999999854 3457899999999999999999999999999977889
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 471 RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
..+|+.+...|.+.|++++|.+.|+++.+.. +.+..+|..+..+|.+.|++++|...|+++.+
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 305 ADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999874 56789999999999999999999999999996
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-24 Score=234.13 Aligned_cols=379 Identities=14% Similarity=0.067 Sum_probs=324.4
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003913 186 LADYMGKERKFAKCRDIFDDIINQGRVPSE-MTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRAL 264 (787)
Q Consensus 186 li~~~~~~g~~~~A~~~f~~m~~~g~~pd~-~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~ 264 (787)
+...+.+.|++++|...++.+.+.. |+. ..+..+...+. +.|++++|...++...+. .+.+..+|..+...+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~---~~~~~~~a~~~~~~a~~~--~p~~~~~~~~lg~~~ 77 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHF---QCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVY 77 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHH
Confidence 3455678999999999999988763 544 45555555666 799999999999999885 355677888888888
Q ss_pred HcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 003913 265 VSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG-KEVLLSVLRVCA 343 (787)
Q Consensus 265 ~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~li~~~~ 343 (787)
... |++++|...|+++++.... +...+..+. ..+...|++++|...|+++.+. .|+ ...+..+...+.
T Consensus 78 ~~~------g~~~~A~~~~~~al~~~p~-~~~~~~~l~--~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 146 (388)
T 1w3b_A 78 KER------GQLQEAIEHYRHALRLKPD-FIDGYINLA--AALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLK 146 (388)
T ss_dssp HHH------TCHHHHHHHHHHHHHHCTT-CHHHHHHHH--HHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHH
T ss_pred HHC------CCHHHHHHHHHHHHHcCcc-hHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH
Confidence 876 7999999999999886532 344555555 7888999999999999999885 455 456777888899
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003913 344 KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTES 423 (787)
Q Consensus 344 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 423 (787)
..|++++|.+.|+++.+..+. +..+|+.+...|.+.|++++|...|+++.+... -+...|..+...+...|++++|..
T Consensus 147 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~ 224 (388)
T 1w3b_A 147 ALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVA 224 (388)
T ss_dssp TTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999987643 678999999999999999999999999998743 367789999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 003913 424 LMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTI 503 (787)
Q Consensus 424 l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 503 (787)
.+++..+.. +.+..++..+..+|.+.|++++|...|+++.+..+.+..+|..+...|.+.|++++|.+.|+++.+..
T Consensus 225 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-- 301 (388)
T 1w3b_A 225 AYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-- 301 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Confidence 999998854 33588999999999999999999999999998667788999999999999999999999999999874
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhh
Q 003913 504 GVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGL 583 (787)
Q Consensus 504 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~ 583 (787)
+.+..+|+.+...+.+.|++++|+..|+++.+ ..|+. ..++..+...+
T Consensus 302 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p~~----------------------------~~~~~~l~~~~ 349 (388)
T 1w3b_A 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALE----VFPEF----------------------------AAAHSNLASVL 349 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT----SCTTC----------------------------HHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCc----------------------------HHHHHHHHHHH
Confidence 67899999999999999999999999999986 45542 56788899999
Q ss_pred hhccchhhcceeEE--EEEccCCcccHHHHHHHHHHch
Q 003913 584 CIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYH 619 (787)
Q Consensus 584 ~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g 619 (787)
...|++++|...++ +++.|+++..+..++.+|...|
T Consensus 350 ~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 350 QQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 99999999999887 7788999999999999888765
|
| >3c0w_A Intron-encoded endonuclease I-SCEI; endonuclease, homing, ladlidadg, catalytic mechanism, metal binding; HET: DNA; 2.20A {Saccharomyces cerevisiae} PDB: 1r7m_A* 3c0x_A* 3ool_A 3oor_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.1e-24 Score=205.10 Aligned_cols=187 Identities=28% Similarity=0.430 Sum_probs=146.0
Q ss_pred CCchHHHHHHHHHHhhhhhhccchhhcceeEEEEEccCCcccHHHHHHHHHHchhhcCCCcccc-----CCCCCcceEEe
Q 003913 566 NLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHEWLHPSFKVS-----DGNDDIPYKYS 640 (787)
Q Consensus 566 ~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~-----~~~~~~p~~~~ 640 (787)
+++.++..++.+.||+.......-...-.-+.++.. ....+-++|.....+-...+... .+.......|+
T Consensus 28 ~Ls~~q~eiliG~LLGDg~l~~~~~~~~~R~~f~qs-----~~~Yl~~l~~~l~~~~~~~p~~~~~~~~~~k~~~~~~F~ 102 (235)
T 3c0w_A 28 ELNIEQFEAGIGLILGDAYIRSRDEGKTYCMQFEWK-----NKAYMDHVCLLYDQWVLSPPHKKERVNHLGNLVITWGAQ 102 (235)
T ss_dssp SCCHHHHHHHHHHHHTTCEEECSSTTSCBEEEEEES-----CHHHHHHHHHHTGGGCCSCCEEEEEECTTSCEEEEEEEE
T ss_pred cCCHHHHHHHeeeecCCCeEEecCCCCCEEEEEEcC-----CHHHHHHHHHHHHHHhCCCCceeeeeccCCceeeEEEEE
Confidence 466777899999999876554332211112234333 33445577888877766544431 12222345689
Q ss_pred eeccchHHHHHHhhccCccccccc-chhhcCChhHHHHHhhcCCccc-------CCCcEEEEccCCHHHHHHHHHHHhhC
Q 003913 641 TISHPYFCFYADKFWPKGRLVIPK-LIHRWLTPRALAYWFMYGGHRT-------SVGDILLKLKVSSEGIALVFKTLKAR 712 (787)
Q Consensus 641 t~~~~~~~~~~~g~~~~a~~~~~~-mi~~gl~P~~lay~~m~~g~~~-------~~g~~~~~~~g~~~e~~~l~~~l~~~ 712 (787)
|+.+++|.++++.||+++.|++|+ .++++++|.++|||+|+||++. ..|.++|+++++.+|++.|++.|..+
T Consensus 103 T~s~~~f~~l~~~FY~~~~K~IP~~~I~~~LTP~aLA~W~MDDGs~~~~~~~~~~~gi~L~T~sFt~~ev~~L~~~L~~k 182 (235)
T 3c0w_A 103 TFKHQAFNKLANLFIVNNKKTIPNNLVENYLTPMSLAYWFMDDGGKWDYNKNSTNKSIVLNTQSFTFEEVEYLVKGLRNK 182 (235)
T ss_dssp CCCBGGGHHHHHTTBSSSSBCCCTTHHHHHCCHHHHHHHHHHHEEESCCSTTCCCCCEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHhheeCCEEECCHHHHHHhcCHHHHHheEECCCccccccccCCCCcEEEEeCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999 9999999999999999999973 34555556655999999999999998
Q ss_pred -CCceEEEecCcEEEEEEeCCchHHHHHhccccccccccccccCCC
Q 003913 713 -SLDCRVKKKGRVFWIGFLGSNSTLFWKLIEPYVLDELKEDLLNEG 757 (787)
Q Consensus 713 -gl~~~~~~~~~~~~i~~~~~~~~~~~~lv~~~~~~~m~~k~~~~~ 757 (787)
||+|+|++++.+|+|||+++|+++|++||+|||+|||+||++.-+
T Consensus 183 f~L~~~i~~~~~~y~Iyi~~~s~~~f~~lI~PYi~psM~YKl~~~~ 228 (235)
T 3c0w_A 183 FQLNCYVKINKNKPIIYIDSMSYLIFYNLIKPYLIPQMMYKLPNTI 228 (235)
T ss_dssp HCCCEEEEEETTEEEEEECGGGHHHHHHHHGGGCCGGGGGGCC---
T ss_pred cCeEEEEEecCCEEEEEEeHHHHHHHHHHhhhhccHhHHhhcCCCC
Confidence 999999999999999999999999999999999999999997643
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.7e-21 Score=215.20 Aligned_cols=410 Identities=10% Similarity=0.024 Sum_probs=303.1
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g 232 (787)
.+.+.|++++|...|+.+.+.. |+..++..+..+|.+.|++++|...|+++.+.+. .+..+|..+..++. +.|
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~---~~g 87 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANE---GLG 87 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHH---HTT
T ss_pred HHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHH---HHh
Confidence 5668899999999999999975 5899999999999999999999999999998753 25678999999999 899
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcC-------------------Ccc
Q 003913 233 CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG-------------------LEI 293 (787)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~-------------------~~p 293 (787)
++++|+..|+++.... +++......++..+... .....+.+.+..+...+ ..|
T Consensus 88 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNG--DFNDASIEPMLERNLNK------QAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP 159 (514)
T ss_dssp CHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHH------HHHHHHTTC---------------------------CCC
T ss_pred hHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCc
Confidence 9999999999999852 34444444444444332 12222222221111110 001
Q ss_pred CH-----------------------HHHHHHHHHhhh---ccCCCHHHHHHHHHHHHH-----cCCCC--------CHHH
Q 003913 294 QK-----------------------DIYSGLIWLHSY---QDNIDKERISLLKKEMQQ-----AGFEE--------GKEV 334 (787)
Q Consensus 294 ~~-----------------------~~~~~li~~~~~---~~~g~~~~a~~l~~~m~~-----~g~~p--------~~~t 334 (787)
.. .....+..+..+ .+.|++++|..+|+++.+ ..-.| +..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (514)
T 2gw1_A 160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239 (514)
T ss_dssp CHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred hhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence 00 122222222222 247889999999988877 31122 3456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003913 335 LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCK 414 (787)
Q Consensus 335 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 414 (787)
+..+...+...|++++|...++++.+.... ..++..+...|...|++++|...|+++.... +.+..+|..+...+..
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHH
Confidence 778888888999999999999988887654 7788888889999999999999999888753 3366788888888999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003913 415 AEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIF 494 (787)
Q Consensus 415 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 494 (787)
.|++++|...++++.+.. +.+..++..+...|...|++++|...++.+.+..+.+..+|..+...|.+.|++++|...|
T Consensus 317 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999888754 3356788888888999999999999999888766667788888899999999999999999
Q ss_pred HHhhhCCCCCCC----HHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCC
Q 003913 495 NHMHSDQTIGVN----TRSCNIILSAYLS---SGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNL 567 (787)
Q Consensus 495 ~~m~~~~~~~p~----~~t~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l 567 (787)
+++.+...-.++ ..+|..+...|.. .|++++|...|+++.+ .+|+.
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~----------------------- 448 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK----LDPRS----------------------- 448 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH----HCTTC-----------------------
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH----hCccc-----------------------
Confidence 888765311111 3488888888888 8999999999998886 34431
Q ss_pred chHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHH
Q 003913 568 SSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRY 613 (787)
Q Consensus 568 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~ 613 (787)
..++..+...+...|+.+.|...++ +.+.|++......+..
T Consensus 449 -----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 449 -----EQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 4567777788888888888888877 6777877666655533
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-19 Score=197.84 Aligned_cols=318 Identities=15% Similarity=0.059 Sum_probs=195.6
Q ss_pred ccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHH
Q 003913 177 RFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSL 256 (787)
Q Consensus 177 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t 256 (787)
+.+...+..+...|.+.|++++|+.+|+++.+... .+..+|..+..++. +.|++++|+..|+++.+.. +.+...
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~--p~~~~~ 96 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFL---AMGKSKAALPDLTKVIQLK--MDFTAA 96 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHH---HCCCHHHHHHHHHHHHhcC--CCcHHH
Confidence 44556666666666666666666666666665421 24566666666666 5666666666666666541 223445
Q ss_pred HHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCH---HHHHHHH----------HHhhhccCCCHHHHHHHHHHH
Q 003913 257 HNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQK---DIYSGLI----------WLHSYQDNIDKERISLLKKEM 323 (787)
Q Consensus 257 ~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li----------~~~~~~~~g~~~~a~~l~~~m 323 (787)
+..+...+... |++++|...|+++.+.+.. +. ..+..+. .+..+...|++++|...|+++
T Consensus 97 ~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 169 (450)
T 2y4t_A 97 RLQRGHLLLKQ------GKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169 (450)
T ss_dssp HHHHHHHHHHT------TCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHc------CCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555554 4666666666666654422 11 2222221 123455667777777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 003913 324 QQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVP 403 (787)
Q Consensus 324 ~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 403 (787)
.+.. +.+..++..+..+|.+.|++++|.++|+++.+... .+..+|..+..+|.+.|++++|...|+++.... +.+..
T Consensus 170 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~ 246 (450)
T 2y4t_A 170 LEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKR 246 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHH
Confidence 6642 23566677777777777777777777777766543 256677777777777777777777777776542 12333
Q ss_pred HHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003913 404 AYHKI------------IELLCKAEETELTESLMKEFVETGMKPL-----MPSYINLTNMYLNLGMHDRLHLAFSECLEK 466 (787)
Q Consensus 404 t~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 466 (787)
.+..+ ...|...|++++|..+|+++.+. .|+ ..++..+..++.+.|++++|...++.+.+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44433 56667777777777777777663 233 345666677777777777777777776664
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHH
Q 003913 467 CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIIL 514 (787)
Q Consensus 467 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li 514 (787)
.+.+..+|..+..+|...|++++|...|+++.+.. +-+...+..+.
T Consensus 325 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~ 370 (450)
T 2y4t_A 325 EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN--ENDQQIREGLE 370 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--cchHHHHHHHH
Confidence 45566777777777777777777777777776653 33445555554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-19 Score=198.45 Aligned_cols=301 Identities=12% Similarity=0.019 Sum_probs=255.1
Q ss_pred CHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCcc
Q 003913 214 SEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEI 293 (787)
Q Consensus 214 d~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p 293 (787)
+...|..+...+. +.|++++|+.+|+++.+. .+.+..++..+..++... |++++|...|+++++.+..
T Consensus 25 ~~~~~~~~~~~~~---~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~p~- 92 (450)
T 2y4t_A 25 DVEKHLELGKKLL---AAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAM------GKSKAALPDLTKVIQLKMD- 92 (450)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHC------CCHHHHHHHHHHHHhcCCC-
Confidence 6778999999999 899999999999999985 345677888888888776 6999999999999987743
Q ss_pred CHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCH----HHHHHH------------HHHHHhcCChHHHHHHHHH
Q 003913 294 QKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGK----EVLLSV------------LRVCAKEGDVEDAEKTWLR 357 (787)
Q Consensus 294 ~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~----~t~~~l------------i~~~~~~g~~~~A~~~~~~ 357 (787)
+...+..+. ..+...|++++|...|+++.+. .|+. .++..+ ...+.+.|++++|...+++
T Consensus 93 ~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 93 FTAARLQRG--HLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp CHHHHHHHH--HHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344555544 8888999999999999999874 5554 455555 3448899999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003913 358 LLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLM 437 (787)
Q Consensus 358 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 437 (787)
+.+..+. +..++..+..+|.+.|++++|.+.|+++.+.. +.+..+|..+...|...|++++|...|+++.+.. +.+.
T Consensus 169 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~ 245 (450)
T 2y4t_A 169 ILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHK 245 (450)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChH
Confidence 9987643 78899999999999999999999999998763 3478899999999999999999999999999753 3344
Q ss_pred HHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 438 PSYINL------------TNMYLNLGMHDRLHLAFSECLEKCRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 438 ~t~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
..+..+ ..+|.+.|++++|...|+.+.+..+.+ ..+|..+...|.+.|++++|+..++++.+..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 325 (450)
T 2y4t_A 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME 325 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 555444 889999999999999999998843334 4588999999999999999999999998864
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 502 TIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 502 ~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+.+..+|..+..+|...|++++|...|+++.+
T Consensus 326 --p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 326 --PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred --cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 55789999999999999999999999999996
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=9e-21 Score=212.89 Aligned_cols=411 Identities=11% Similarity=0.023 Sum_probs=317.9
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003913 180 FALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNS 259 (787)
Q Consensus 180 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ 259 (787)
...+..+...+.+.|++++|+..|+++.+.+ ||..+|..+..++. +.|++++|+..|+++.+.. +.+...+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~--p~~~~~~~~ 78 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYV---SVGDLKKVVEMSTKALELK--PDYSKVLLR 78 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHC--SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHH---HHhhHHHHHHHHHHHhccC--hHHHHHHHH
Confidence 4456677788999999999999999999875 79999999999999 8999999999999999852 334557777
Q ss_pred HHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcC------------
Q 003913 260 LFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAG------------ 327 (787)
Q Consensus 260 ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g------------ 327 (787)
+..++... |++++|...|+.+...+...+... ..++ ...........+.+.+..+...+
T Consensus 79 l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 149 (514)
T 2gw1_A 79 RASANEGL------GKFADAMFDLSVLSLNGDFNDASI-EPML--ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAK 149 (514)
T ss_dssp HHHHHHHT------TCHHHHHHHHHHHHHSSSCCGGGT-HHHH--HHHHHHHHHHHHTTC--------------------
T ss_pred HHHHHHHH------hhHHHHHHHHHHHHhcCCCccchH-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhh
Confidence 77788776 699999999999998875332222 2111 11111101111111111110000
Q ss_pred -------CC------------------------CC-HHHHHHHHHHHHh---cCChHHHHHHHHHHHh-----CCCC---
Q 003913 328 -------FE------------------------EG-KEVLLSVLRVCAK---EGDVEDAEKTWLRLLE-----SDNG--- 364 (787)
Q Consensus 328 -------~~------------------------p~-~~t~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~~--- 364 (787)
.. |+ ...+......+.. .|++++|..+++++.+ ..-.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 229 (514)
T 2gw1_A 150 ERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNED 229 (514)
T ss_dssp -------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTC
T ss_pred HHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccc
Confidence 00 11 3344444444444 8999999999999988 4111
Q ss_pred -----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 003913 365 -----IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPS 439 (787)
Q Consensus 365 -----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 439 (787)
.+..++..+...|...|++++|...|+++.+.. |+..+|..+...+...|++++|...++++.+.. +.+..+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 306 (514)
T 2gw1_A 230 EKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSV 306 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHH
T ss_pred cccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHH
Confidence 135677888999999999999999999998874 348889999999999999999999999999854 446789
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc
Q 003913 440 YINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS 519 (787)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~ 519 (787)
+..+...|...|++++|...|+.+.+..+.+..++..+...|.+.|++++|..+|+++.+.. +.+..+|..+...|.+
T Consensus 307 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~ 384 (514)
T 2gw1_A 307 YYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTD 384 (514)
T ss_dssp HHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHH
Confidence 99999999999999999999999998667788899999999999999999999999999874 4577899999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhh---ccchhhcceeE
Q 003913 520 SGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCI---ESDEKRKRHMI 596 (787)
Q Consensus 520 ~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~---~~~~~~a~~~~ 596 (787)
.|++++|...|+++.+ ..|+. .... ....+|..+...+.. .|+++.|...+
T Consensus 385 ~~~~~~A~~~~~~a~~----~~~~~--------------------~~~~--~~~~~~~~l~~~~~~~~~~~~~~~A~~~~ 438 (514)
T 2gw1_A 385 KNDFDKALKQYDLAIE----LENKL--------------------DGIY--VGIAPLVGKATLLTRNPTVENFIEATNLL 438 (514)
T ss_dssp TTCHHHHHHHHHHHHH----HHHTS--------------------SSCS--SCSHHHHHHHHHHHTSCCTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH----hhhcc--------------------chHH--HHHHHHHHHHHHHhhhhhcCCHHHHHHHH
Confidence 9999999999999986 33331 0000 002378888888888 89999999888
Q ss_pred E--EEEccCCcccHHHHHHHHHHchhhcCCCccccCCCCCcce
Q 003913 597 R--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPY 637 (787)
Q Consensus 597 ~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~ 637 (787)
+ +...|+++..+..++.+|...|++++|...+.+.....|.
T Consensus 439 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 439 EKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 7 6778999999999999999999999998888777666665
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.83 E-value=5.5e-19 Score=199.63 Aligned_cols=428 Identities=11% Similarity=0.057 Sum_probs=317.4
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g 232 (787)
.+.+.|++++|...|+.+.+.. +.+..++..+..+|.+.|++++|++.|++..+.+. .+..+|..+...+. +.|
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~---~~g 107 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASANE---SLG 107 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH---HHT
T ss_pred HHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHH---HcC
Confidence 7778999999999999999986 66889999999999999999999999999988653 26778888888888 799
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHc------CCccCHHHHHHHHHHhh
Q 003913 233 CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTS------GLEIQKDIYSGLIWLHS 306 (787)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~------~~~p~~~~~~~li~~~~ 306 (787)
++++|+..|+.+ . ..|+.... .+..+... +...+|...++.+... ...|+........
T Consensus 108 ~~~~A~~~~~~~-~---~~~~~~~~--~~~~~~~~------~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---- 171 (537)
T 3fp2_A 108 NFTDAMFDLSVL-S---LNGDFDGA--SIEPMLER------NLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFF---- 171 (537)
T ss_dssp CHHHHHHHHHHH-C----------------CHHHH------HHHHHHHHHHHHHCC-------CCCCCHHHHHHHH----
T ss_pred CHHHHHHHHHHH-h---cCCCCChH--HHHHHHHH------HHHHHHHHHHHHHHHhCccccccccchHhHHHHHH----
Confidence 999999999633 2 34443322 22233332 4678899999888553 2334444433322
Q ss_pred hccCCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHH--------hcCChHHHHHHHHHHHhCCCCCC------HHHHH
Q 003913 307 YQDNIDKERISLLKKEMQQAGFEEGKEV-LLSVLRVCA--------KEGDVEDAEKTWLRLLESDNGIP------TPAFV 371 (787)
Q Consensus 307 ~~~~g~~~~a~~l~~~m~~~g~~p~~~t-~~~li~~~~--------~~g~~~~A~~~~~~m~~~~~~~~------~~~~~ 371 (787)
...+.+.+...+..... ..+.... ...+...+. ..|++++|..+++++.+..+... ..++.
T Consensus 172 --~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 247 (537)
T 3fp2_A 172 --GIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALC 247 (537)
T ss_dssp --HTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHH
T ss_pred --HhcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHH
Confidence 33444444433322211 2222222 222222222 23589999999999998764311 23566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003913 372 YKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG 451 (787)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 451 (787)
.+...+...|++++|...|++..+. .|+..+|..+...+...|++++|...++++.+.. +.+..++..+...|...|
T Consensus 248 ~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 248 YTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQ 324 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcC
Confidence 7778899999999999999999986 4668889999999999999999999999999864 456889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 003913 452 MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYD 531 (787)
Q Consensus 452 ~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 531 (787)
++++|...|+++.+..+.+..+|..+...|.+.|++++|.+.|+++.+.. +.+...|..+...|...|++++|...|+
T Consensus 325 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999998666778999999999999999999999999999874 5677899999999999999999999999
Q ss_pred HHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhc----------cchhhcceeEE--EE
Q 003913 532 LMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIE----------SDEKRKRHMIR--FQ 599 (787)
Q Consensus 532 ~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~----------~~~~~a~~~~~--~~ 599 (787)
++.+ ..|+. ..... ....+..+...+... |+++.|...++ +.
T Consensus 403 ~a~~----~~~~~--------------------~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 403 IAKR----LEEVQ--------------------EKIHV--GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp HHHH----HHHHC--------------------SSCSS--TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHH----cCCcc--------------------hhhHH--HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence 9987 34431 00000 012233444455555 88889988887 77
Q ss_pred EccCCcccHHHHHHHHHHchhhcCCCccccCCCCCcce
Q 003913 600 FNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPY 637 (787)
Q Consensus 600 ~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~ 637 (787)
..|++...+..++.+|...|++++|...+.+.....|.
T Consensus 457 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 457 LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 78999999999999999999999998888766665554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-17 Score=186.73 Aligned_cols=394 Identities=10% Similarity=0.013 Sum_probs=292.6
Q ss_pred hccCCCcchhhHHHHHHhhccccCCcch-HHHHH--HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCCh
Q 003913 120 CKELPSHKGGTLVRILNAQKKWLRQEDG-TYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKF 196 (787)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~~p~~~-t~~~~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 196 (787)
...+....+...++..... .|+.. .+..+ ++.+.|++++|.+.++.+.+.. +.+..++..+...+.+.|++
T Consensus 36 ~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~ 109 (537)
T 3fp2_A 36 FTAKNFNEAIKYYQYAIEL----DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNF 109 (537)
T ss_dssp HHTTCCC-CHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHhccHHHHHHHHHHHHhh----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCH
Confidence 3555566666655554432 34333 33333 7778999999999999999986 66888999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHh-----CCCCCCHHHH--------------
Q 003913 197 AKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQL-----GGYQPRPSLH-------------- 257 (787)
Q Consensus 197 ~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~-----~g~~pd~~t~-------------- 257 (787)
++|...|+.+ .. .|+ ..+..+..+. ..+...+|+..++++... ....|+....
T Consensus 110 ~~A~~~~~~~-~~--~~~--~~~~~~~~~~---~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 110 TDAMFDLSVL-SL--NGD--FDGASIEPML---ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHHHHHHH-C---------------CHH---HHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHH-hc--CCC--CChHHHHHHH---HHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 9999999744 22 233 2233344444 456678899999888542 0122333222
Q ss_pred ---------------HHHHHHHHcCCC-C--CChhhHHHHHHHHHHHHHcCCccCHHH-----HHHHHHHhhhccCCCHH
Q 003913 258 ---------------NSLFRALVSKPG-G--LSKYYLQQAEFIFHNLLTSGLEIQKDI-----YSGLIWLHSYQDNIDKE 314 (787)
Q Consensus 258 ---------------~~ll~~~~~~~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~-----~~~li~~~~~~~~g~~~ 314 (787)
...+..+....+ . ...|++++|..+++++.+..... ... ......+..+...|+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~-~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVD-DPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCC-HHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCc-chhhHHHHHHHHHHHHHHHhcccHH
Confidence 222222211110 0 00147889999999998766432 221 12333446778899999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003913 315 RISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQ 394 (787)
Q Consensus 315 ~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 394 (787)
+|...|++..+. .|+..++..+...+...|++++|.+.++++.+.... +..+|..+...|...|++++|...|++..
T Consensus 261 ~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 261 DAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999885 567888999999999999999999999999987654 68889999999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC
Q 003913 395 ERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK------CR 468 (787)
Q Consensus 395 ~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~------~~ 468 (787)
+... .+...|..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...|+.+.+. ..
T Consensus 338 ~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 415 (537)
T 3fp2_A 338 SLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415 (537)
T ss_dssp HHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH
Confidence 8643 256789999999999999999999999999864 445789999999999999999999999998761 11
Q ss_pred CCHHHHHHHHHHHHhc----------CCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 469 PNRTIYGIYLESLKNA----------GNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 469 p~~~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.....+..+...|.+. |++++|...|+++.+.. +.+..+|..+...|.+.|++++|.+.|++..+
T Consensus 416 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD--PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp STTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 2233455666778888 99999999999999875 56789999999999999999999999999997
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-15 Score=161.10 Aligned_cols=316 Identities=12% Similarity=0.012 Sum_probs=149.9
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g 232 (787)
.+...|++++|...|+.+.+.. +.+..++..+...+...|++++|...|++..+.... +...|..+...+. +.|
T Consensus 12 ~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~---~~~ 85 (359)
T 3ieg_A 12 KLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLLL---KQG 85 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH---HHT
T ss_pred HHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHHH---HcC
Confidence 3445555555555555555543 334455555555555555555555555555543211 3344555555555 455
Q ss_pred CHHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhcc
Q 003913 233 CLDEACSIYNRMIQLGGYQP---RPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQD 309 (787)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~p---d~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 309 (787)
++++|+..|+++.+ ..| +.......+. .+..+.. ....+..+..
T Consensus 86 ~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~------------~~~~~~~------------------~~~~a~~~~~ 132 (359)
T 3ieg_A 86 KLDEAEDDFKKVLK---SNPSEQEEKEAESQLV------------KADEMQR------------------LRSQALDAFD 132 (359)
T ss_dssp CHHHHHHHHHHHHT---SCCCHHHHHHHHHHHH------------HHHHHHH------------------HHHHHHHHHH
T ss_pred ChHHHHHHHHHHHh---cCCcccChHHHHHHHH------------HHHHHHH------------------HHHHHHHHHH
Confidence 55555555555554 234 1111110000 0100000 0111234445
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003913 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEI 389 (787)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 389 (787)
.|++++|..+++++.+.. +.+..++..+...+...|++++|...++++.+..+. +..++..+...|...|++++|...
T Consensus 133 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 556666666666655532 224455555556666666666666666665555432 455555566666666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003913 390 FREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP 469 (787)
Q Consensus 390 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p 469 (787)
|++..+... .+...+..+... . .......+...+.+.|++++|...++.+.+..+.
T Consensus 211 ~~~a~~~~~-~~~~~~~~~~~~-----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 266 (359)
T 3ieg_A 211 VRECLKLDQ-DHKRCFAHYKQV-----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 266 (359)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHH-----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHhhCc-cchHHHHHHHHH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 665554321 122222111000 0 0001112234455555555555555555542222
Q ss_pred CHH----HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 470 NRT----IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 470 ~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+.. .|..+...|.+.|++++|.+.|++..+.. +.+..+|..+...|.+.|++++|...|++..+
T Consensus 267 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 267 VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 321 23344555555555555555555555542 33455555555555555555555555555554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-15 Score=161.95 Aligned_cols=294 Identities=16% Similarity=0.111 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCC-CHHHHH
Q 003913 180 FALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQP-RPSLHN 258 (787)
Q Consensus 180 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~ 258 (787)
+..+..+...+.+.|++++|...|+++.+... .+..+|..+...+. ..|++++|+..|+++.+. .| +...+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~---~~~~~~~A~~~~~~~~~~---~~~~~~~~~ 75 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFL---AMGKSKAALPDLTKVIAL---KMDFTAARL 75 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH---CTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHH---HccCHHHHHHHHHHHHHh---CCCcchHHH
Confidence 34555666666677777777777777666532 24556666666666 567777777777766653 23 334444
Q ss_pred HHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCcc--CHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003913 259 SLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEI--QKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLL 336 (787)
Q Consensus 259 ~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~ 336 (787)
.+...+... |++++|...|+++.+..... +...+..+.. ... ...+.
T Consensus 76 ~l~~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~---------~~~----------------~~~~~ 124 (359)
T 3ieg_A 76 QRGHLLLKQ------GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVK---------ADE----------------MQRLR 124 (359)
T ss_dssp HHHHHHHHH------TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH---------HHH----------------HHHHH
T ss_pred HHHHHHHHc------CChHHHHHHHHHHHhcCCcccChHHHHHHHHH---------HHH----------------HHHHH
Confidence 444444443 46666666666665443210 0111111100 000 01122
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003913 337 SVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAE 416 (787)
Q Consensus 337 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 416 (787)
.+...+...|++++|.+.++++.+..+ .+...+..+...+...|
T Consensus 125 ~~a~~~~~~~~~~~A~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~ 168 (359)
T 3ieg_A 125 SQALDAFDGADYTAAITFLDKILEVCV------------------------------------WDAELRELRAECFIKEG 168 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT------------------------------------TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCC------------------------------------CchHHHHHHHHHHHHCC
Confidence 233344445555555555554444432 23344444444444445
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH------------HHHHHHHhc
Q 003913 417 ETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYG------------IYLESLKNA 484 (787)
Q Consensus 417 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~------------~li~~~~~~ 484 (787)
++++|...++++.+.. +.+..++..+...|...|++++|...|+...+..+.+..++. .+...+.+.
T Consensus 169 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 247 (359)
T 3ieg_A 169 EPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD 247 (359)
T ss_dssp CHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5555555544444432 223444555555555555555555555555443333333332 346778999
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 003913 485 GNIEKAEEIFNHMHSDQTIGVNT----RSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYV 551 (787)
Q Consensus 485 g~~~~A~~l~~~m~~~~~~~p~~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~ 551 (787)
|++++|.+.++++.+.. +.+. ..|..+...|.+.|++++|+..|++..+.. +-++..+..+..+
T Consensus 248 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 248 GRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEA 315 (359)
T ss_dssp TCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 99999999999999864 2333 345668889999999999999999999742 2244444444443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-19 Score=203.85 Aligned_cols=162 Identities=10% Similarity=0.126 Sum_probs=134.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003913 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLE---SDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHK 407 (787)
Q Consensus 331 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 407 (787)
-..||++||++||+.|++++|.++|++|.+ .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||++|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 467999999999999999999999988764 48899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHH
Q 003913 408 IIELLCKAEET-ELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN------RTIYGIYLES 480 (787)
Q Consensus 408 li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~------~~~~~~li~~ 480 (787)
||.++|+.|+. ++|.++|++|.+.|+.||..||++++.++.+.+-++.+.+ +..+..|+ +.+...|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrk----v~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK----VKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGG----GCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHH----hCcccCCCCCCcccccchHHHHHH
Confidence 99999999985 7899999999999999999999999988877654444433 32233333 5566667777
Q ss_pred HHhcC---------CHHHHHHHHHH
Q 003913 481 LKNAG---------NIEKAEEIFNH 496 (787)
Q Consensus 481 ~~~~g---------~~~~A~~l~~~ 496 (787)
|.+.+ ..++-.++|++
T Consensus 282 ~s~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 282 YAKDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp HCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred HccCCCCcCccccCCHHHHHHHHHH
Confidence 87665 24555555554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.8e-19 Score=199.26 Aligned_cols=150 Identities=6% Similarity=0.092 Sum_probs=128.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003913 366 PTPAFVYKMEAYAKIGEFMKSLEIFREMQ---ERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYIN 442 (787)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 442 (787)
-..+||+||++||++|++++|.++|++|. .+|+.||++|||+||.+||+.|++++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45799999999999999999999998876 468999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC------HHHHHHHH
Q 003913 443 LTNMYLNLGM-HDRLHLAFSECLE-KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN------TRSCNIIL 514 (787)
Q Consensus 443 li~~~~~~g~-~~~a~~~~~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~------~~t~~~li 514 (787)
||+++|+.|+ .++|.++|++|.+ |+.||..+|++++.++.+.+ +++..+++.. + +.|+ ..+...|.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv~P-~-f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKVKP-T-FSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGGCC-C-CCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHhCc-c-cCCCCCCcccccchHHHH
Confidence 9999999998 5889999999998 99999999999998887754 4444444422 2 3443 45566667
Q ss_pred HHHHcCC
Q 003913 515 SAYLSSG 521 (787)
Q Consensus 515 ~~~~~~g 521 (787)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 7777665
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-16 Score=167.52 Aligned_cols=280 Identities=8% Similarity=-0.059 Sum_probs=225.1
Q ss_pred hhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-Ch
Q 003913 305 HSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIG-EF 383 (787)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~ 383 (787)
..+...|++++|..+|+++.+.. +.+..++..++.++...|++++|..+++++.+..+. +..+|..+...|...| ++
T Consensus 30 ~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 107 (330)
T 3hym_B 30 ERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGCYYLMVGHKN 107 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHHHHHHSCSCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhhhhH
Confidence 56667789999999999888753 224456667778888999999999999998887643 5778888899999999 89
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003913 384 MKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSEC 463 (787)
Q Consensus 384 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 463 (787)
++|...|++..+.. +.+...|..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...++.+
T Consensus 108 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 185 (330)
T 3hym_B 108 EHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQA 185 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999988763 2356778889999999999999999999988854 334667777889999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 003913 464 LEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT-------IGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 464 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-------~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (787)
.+..+.+..++..+...|.+.|++++|...|+++.+... .+.+..+|..+...|.+.|++++|+..|++..+
T Consensus 186 l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~- 264 (330)
T 3hym_B 186 LSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV- 264 (330)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-
Confidence 887777888999999999999999999999998876310 133467888999999999999999999999886
Q ss_pred CCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHH
Q 003913 537 KYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYL 614 (787)
Q Consensus 537 g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~ 614 (787)
..|+. ..+|..+...+...|+.+.|...++ +.++|+++..+..++.+
T Consensus 265 ---~~~~~----------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 313 (330)
T 3hym_B 265 ---LIPQN----------------------------ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHC 313 (330)
T ss_dssp ---HSTTC----------------------------SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHH
T ss_pred ---hCccc----------------------------hHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHH
Confidence 34431 4667788888888888888888887 77788888888888887
Q ss_pred HH-Hchh
Q 003913 615 YD-QYHE 620 (787)
Q Consensus 615 y~-~~g~ 620 (787)
+. ..|+
T Consensus 314 ~~~~~g~ 320 (330)
T 3hym_B 314 IEMYIGD 320 (330)
T ss_dssp HHTTTTC
T ss_pred HHHHhCc
Confidence 74 4443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.3e-15 Score=156.68 Aligned_cols=291 Identities=12% Similarity=0.018 Sum_probs=180.1
Q ss_pred CHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCcc
Q 003913 214 SEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEI 293 (787)
Q Consensus 214 d~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p 293 (787)
+...+..+...+. ..|++++|+++|+++.+.. +.+...+..+...+... |++++|..+++++.+....
T Consensus 21 ~~~~~~~~a~~~~---~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~------~~~~~A~~~~~~~~~~~~~- 88 (330)
T 3hym_B 21 NLDVVVSLAERHY---YNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVEL------NKANELFYLSHKLVDLYPS- 88 (330)
T ss_dssp CCTTHHHHHHHHH---HTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHH------TCHHHHHHHHHHHHHHCTT-
T ss_pred hHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHh------hhHHHHHHHHHHHHHhCcC-
Confidence 3344444444444 4555555555555555431 11222222333333332 3555555555555543321
Q ss_pred CHHHHHHHHHHhhhccCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 003913 294 QKDIYSGLIWLHSYQDNI-DKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVY 372 (787)
Q Consensus 294 ~~~~~~~li~~~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 372 (787)
+...+..+. ..+...| ++++|...|++..+.. +.+...+..+...+...|++++|.+.++++.+.... +...+..
T Consensus 89 ~~~~~~~l~--~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 164 (330)
T 3hym_B 89 NPVSWFAVG--CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLY 164 (330)
T ss_dssp STHHHHHHH--HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHH
T ss_pred CHHHHHHHH--HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHH
Confidence 112222222 4444455 5566666666555432 123456677777777778888888887777776543 3456666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--------CCCCHHHHHHHH
Q 003913 373 KMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETG--------MKPLMPSYINLT 444 (787)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~p~~~t~~~li 444 (787)
+...|...|++++|...|++..+.. +.+...+..+...+...|++++|...++++.+.. ...+..++..+.
T Consensus 165 l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la 243 (330)
T 3hym_B 165 IGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG 243 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH
Confidence 7777888888888888888777653 3356777777778888888888888887776631 123356777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH-HcCCCH
Q 003913 445 NMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAY-LSSGDF 523 (787)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~-~~~g~~ 523 (787)
.+|.+.|++++|...|++..+..+.+..+|..+...|.+.|++++|.+.|++..+.. +.+...+..+..++ ...|+.
T Consensus 244 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 244 HVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR--RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC--SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC--CCchHHHHHHHHHHHHHhCch
Confidence 888888888888888888777556677778888888888888888888888887763 44667777777766 345543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.71 E-value=9.2e-17 Score=171.73 Aligned_cols=259 Identities=9% Similarity=-0.018 Sum_probs=130.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003913 334 VLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLC 413 (787)
Q Consensus 334 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 413 (787)
.+..+...+.+.|++++|...++++.+..+. +..+|..+..+|.+.|++++|.+.|+++.+.. +.+..+|..+...|.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3444455555555555555555555554322 34455555555555555555555555555442 224445555555555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHH
Q 003913 414 KAEETELTESLMKEFVETGMKPLMPSYIN---------------LTNMYLNLGMHDRLHLAFSECLEKCRP--NRTIYGI 476 (787)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~---------------li~~~~~~g~~~~a~~~~~~m~~~~~p--~~~~~~~ 476 (787)
..|++++|...++++.+.. +.+...+.. .+..+...|++++|...|+.+.+..+. +..+|..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 5555555555555555432 111111110 122222555555555555555542222 4555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcc
Q 003913 477 YLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNR 556 (787)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~ 556 (787)
+...|.+.|++++|+..|+++.+.. +.+..+|..+...|.+.|++++|+..|+++.+ ..|+.
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~~~~------------ 284 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALE----LQPGY------------ 284 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCc------------
Confidence 5555555555555555555555442 23445555555555555555555555555554 22221
Q ss_pred cccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCC-----------cccHHHHHHHHHHchhhcC
Q 003913 557 KEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENS-----------RMHSVLRRYLYDQYHEWLH 623 (787)
Q Consensus 557 ~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~-----------~~~~~~l~~~y~~~g~~~~ 623 (787)
..++..+...+...|+++.|...++ +.+.|++ ...+..++.+|...|++++
T Consensus 285 ----------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 285 ----------------IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp ----------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred ----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 3344444555555555555554444 3334433 5667778888888888877
Q ss_pred CCcccc
Q 003913 624 PSFKVS 629 (787)
Q Consensus 624 A~~~~~ 629 (787)
|.....
T Consensus 349 A~~~~~ 354 (368)
T 1fch_A 349 YGAADA 354 (368)
T ss_dssp HHHHHT
T ss_pred HHHhHH
Confidence 755544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.2e-13 Score=147.10 Aligned_cols=342 Identities=15% Similarity=0.076 Sum_probs=285.0
Q ss_pred cCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCc--
Q 003913 157 IRENETGFRVYEWMMQQHWYRFDFALATKLADYMGK----ERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPV-- 230 (787)
Q Consensus 157 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~-- 230 (787)
.+++++|...|+...+.| +...+..|...|.. .+++++|...|++..+.| +...+..|-..|. .
T Consensus 56 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~---~g~ 125 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYH---EGN 125 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH---HTS
T ss_pred CcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH---cCC
Confidence 789999999999999887 66788888888988 899999999999999876 6677777877777 4
Q ss_pred --CCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhc
Q 003913 231 --QGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQ 308 (787)
Q Consensus 231 --~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 308 (787)
.+++++|+..|++..+. | +...+..+-..+....+ ..++.++|...|++..+.| +...+..+. ..+.
T Consensus 126 g~~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g--~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg--~~y~ 194 (490)
T 2xm6_A 126 GVKVDKAESVKWFRLAAEQ-G---RDSGQQSMGDAYFEGDG--VTRDYVMAREWYSKAAEQG---NVWSCNQLG--YMYS 194 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSS--SCCCHHHHHHHHHHHHHTT---CHHHHHHHH--HHHH
T ss_pred CCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCC--CCCCHHHHHHHHHHHHHCC---CHHHHHHHH--HHHh
Confidence 68999999999999875 3 34455555555554111 1158999999999999876 344444444 3343
Q ss_pred c----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-
Q 003913 309 D----NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAK----EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK- 379 (787)
Q Consensus 309 ~----~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~- 379 (787)
. .++.++|...|++..+.| +...+..+...|.. .++.++|.+.|++..+.| +...+..+...|..
T Consensus 195 ~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g 268 (490)
T 2xm6_A 195 RGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQG 268 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHT
T ss_pred cCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCC
Confidence 3 789999999999998865 56788888888886 899999999999999876 56788888888888
Q ss_pred ---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003913 380 ---IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKA-----EETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG 451 (787)
Q Consensus 380 ---~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 451 (787)
.++.++|++.|++..+.| +...+..+...|... ++.++|...+++..+.| +...+..|...|...|
T Consensus 269 ~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 269 LAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp TTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 899999999999998764 567788888888887 89999999999999876 5678888888888867
Q ss_pred ---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc----C
Q 003913 452 ---MHDRLHLAFSECLEKCRPNRTIYGIYLESLKN----AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS----S 520 (787)
Q Consensus 452 ---~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~----~ 520 (787)
+.++|.+.|++..+. .+...+..|...|.. .+++++|.+.|++..+.+ +...+..|...|.+ .
T Consensus 343 ~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~----~~~a~~~Lg~~y~~g~g~~ 416 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG----LSAAQVQLGEIYYYGLGVE 416 (490)
T ss_dssp CHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSC
T ss_pred CcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHcCCCCC
Confidence 789999999998873 578899999999999 899999999999999987 67889999999998 8
Q ss_pred CCHHHHHHHHHHHHHcC
Q 003913 521 GDFVKAEKIYDLMCLKK 537 (787)
Q Consensus 521 g~~~~A~~~~~~m~~~g 537 (787)
++.++|...|++..+.+
T Consensus 417 ~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 417 RDYVQAWAWFDTASTND 433 (490)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCC
Confidence 99999999999999865
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-15 Score=162.49 Aligned_cols=253 Identities=11% Similarity=-0.033 Sum_probs=186.0
Q ss_pred hhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003913 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEK 353 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 353 (787)
|++++|...|+++++.... +...+..+. ..+...|++++|...|+++.+.. +.+..++..+..+|...|++++|.+
T Consensus 78 g~~~~A~~~~~~al~~~p~-~~~~~~~l~--~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 153 (368)
T 1fch_A 78 GDLPNAVLLFEAAVQQDPK-HMEAWQYLG--TTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACE 153 (368)
T ss_dssp TCHHHHHHHHHHHHHSCTT-CHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHH--HHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3555555555555544321 222222222 45555566666666666665542 2255667777777777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHH---------------HHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 003913 354 TWLRLLESDNGIPTPAFVY---------------KMEAYAKIGEFMKSLEIFREMQERLGSA-SVPAYHKIIELLCKAEE 417 (787)
Q Consensus 354 ~~~~m~~~~~~~~~~~~~~---------------li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~ 417 (787)
.++++.+..... ...+.. .+..+...|++++|...|+++.+..... +..++..+...|...|+
T Consensus 154 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~ 232 (368)
T 1fch_A 154 ILRDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE 232 (368)
T ss_dssp HHHHHHHTSTTT-GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCcCc-HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCC
Confidence 777777765331 122211 2333448899999999999998763221 47889999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 003913 418 TELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHM 497 (787)
Q Consensus 418 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 497 (787)
+++|...++++.+.. +.+..++..+...|.+.|++++|...|+++.+..+.+..+|..+...|.+.|++++|...|+++
T Consensus 233 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 311 (368)
T 1fch_A 233 YDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA 311 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999998864 4467899999999999999999999999998866778899999999999999999999999998
Q ss_pred hhCCCCCCC-----------HHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 498 HSDQTIGVN-----------TRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 498 ~~~~~~~p~-----------~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
.+.. +.+ ..+|..+..+|...|++++|..++++-+
T Consensus 312 l~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 312 LNMQ--RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHH--HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHhC--CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 8753 223 6899999999999999999999887443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-13 Score=151.55 Aligned_cols=340 Identities=13% Similarity=0.027 Sum_probs=276.4
Q ss_pred hHHHHHHHHHHhcCCCccCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCc----CC
Q 003913 161 ETGFRVYEWMMQQHWYRFDFALATKLADYMGK----ERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPV----QG 232 (787)
Q Consensus 161 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~----~g 232 (787)
..+...+....+.| +...+..|...|.. .+++++|...|++..+.| +...+..|-..|. . .+
T Consensus 24 ~~~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~---~g~g~~~ 93 (490)
T 2xm6_A 24 NVNLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYM---NGEGVPQ 93 (490)
T ss_dssp -CCHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH---HTSSSCC
T ss_pred hHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH---cCCCCCC
Confidence 33456666666666 67777788888887 899999999999998875 6778888888887 5 79
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhh--ccC
Q 003913 233 CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSY--QDN 310 (787)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~--~~~ 310 (787)
++++|++.|++..+. | +...+..+-..+....| ..+++++|...|++..+.|. ...+..+..++.. .-.
T Consensus 94 ~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g--~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~y~~g~g~~ 164 (490)
T 2xm6_A 94 DYAQAVIWYKKAALK-G---LPQAQQNLGVMYHEGNG--VKVDKAESVKWFRLAAEQGR---DSGQQSMGDAYFEGDGVT 164 (490)
T ss_dssp CHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSS--SCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSC
T ss_pred CHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCC--CCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCC
Confidence 999999999999875 3 44555555555554211 01589999999999998873 3444444422222 227
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCC
Q 003913 311 IDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAK----EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK----IGE 382 (787)
Q Consensus 311 g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~ 382 (787)
++.++|...|++..+.| +...+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .++
T Consensus 165 ~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~ 238 (490)
T 2xm6_A 165 RDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQD 238 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 88999999999998875 67888888888888 899999999999999887 67888889999987 899
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCH
Q 003913 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCK----AEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL-----GMH 453 (787)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~-----g~~ 453 (787)
+++|...|++..+.| +...+..+...|.. .++.++|...|++..+.| +...+..|...|... +++
T Consensus 239 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~ 312 (490)
T 2xm6_A 239 YTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNR 312 (490)
T ss_dssp HHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCH
Confidence 999999999998764 56777778888887 899999999999998765 567888889999887 899
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc----CCCHHHH
Q 003913 454 DRLHLAFSECLEKCRPNRTIYGIYLESLKNAG---NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS----SGDFVKA 526 (787)
Q Consensus 454 ~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~----~g~~~~A 526 (787)
++|...|++..+. .+...+..|...|.+.| ++++|.++|++..+.| +...+..|...|.. .+++++|
T Consensus 313 ~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A 386 (490)
T 2xm6_A 313 EQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG----EKAAQFNLGNALLQGKGVKKDEQQA 386 (490)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999999998873 35678888999998877 8899999999999986 78899999999998 8999999
Q ss_pred HHHHHHHHHcC
Q 003913 527 EKIYDLMCLKK 537 (787)
Q Consensus 527 ~~~~~~m~~~g 537 (787)
..+|++..+.|
T Consensus 387 ~~~~~~A~~~~ 397 (490)
T 2xm6_A 387 AIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999999865
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=168.28 Aligned_cols=283 Identities=12% Similarity=0.103 Sum_probs=142.4
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCC
Q 003913 191 GKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGG 270 (787)
Q Consensus 191 ~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~ 270 (787)
-+.|++++|.++++++.. ..+|..|..++. +.|++++|++.|.+. +|..+|..++.++...
T Consensus 14 ~~~~~ld~A~~fae~~~~------~~vWs~La~A~l---~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~--- 74 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE------PAVWSQLAKAQL---QKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTS--- 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC------hHHHHHHHHHHH---HcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhC---
Confidence 367889999999999943 358999999999 899999999999642 5667888888888775
Q ss_pred CChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 003913 271 LSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVED 350 (787)
Q Consensus 271 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 350 (787)
|++++|...++..++. .+++.+.+.++ .+|.+.|+++++.++++ .|+..+|..+...|...|++++
T Consensus 75 ---g~~EeAi~yl~~ark~--~~~~~i~~~Li--~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yee 140 (449)
T 1b89_A 75 ---GNWEELVKYLQMARKK--ARESYVETELI--FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDA 140 (449)
T ss_dssp -----------------------------------------CHHHHTTTTT-------CC----------------CTTT
T ss_pred ---CCHHHHHHHHHHHHHh--CccchhHHHHH--HHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHH
Confidence 6999999977777663 34467777777 88899999999988885 4788899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003913 351 AEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVE 430 (787)
Q Consensus 351 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (787)
|...|..+ ..|..|+.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......
T Consensus 141 A~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~--- 202 (449)
T 1b89_A 141 AKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH--- 202 (449)
T ss_dssp HHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT---
T ss_pred HHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH---
Confidence 99999976 37899999999999999999999988 2889999999999999999999655443
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHhhhCCCCCC---
Q 003913 431 TGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA--GNIEKAEEIFNHMHSDQTIGV--- 505 (787)
Q Consensus 431 ~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~~~~~p--- 505 (787)
+...+.-...++..|.+.|++++|..+++..+..-+-....|+-|.-+|++- +++.+.+++|..-.. ++|
T Consensus 203 --L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~in---i~k~~~ 277 (449)
T 1b89_A 203 --IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN---IPKVLR 277 (449)
T ss_dssp --TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSC---HHHHHH
T ss_pred --HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc---CcHHHH
Confidence 2233444557999999999999999999999875577889999999999885 466677777663332 444
Q ss_pred ---CHHHHHHHHHHHHcCCCHHHHHHH
Q 003913 506 ---NTRSCNIILSAYLSSGDFVKAEKI 529 (787)
Q Consensus 506 ---~~~t~~~li~~~~~~g~~~~A~~~ 529 (787)
+...|.-+.-.|.+.++++.|...
T Consensus 278 ~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 278 AAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 567899999999999999988763
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.68 E-value=6e-13 Score=149.80 Aligned_cols=370 Identities=9% Similarity=0.040 Sum_probs=207.6
Q ss_pred hhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCH
Q 003913 155 MRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCL 234 (787)
Q Consensus 155 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~ 234 (787)
.+.|++++|..+|+.+.+. ++.+...|..++..+.+.|++++|..+|++..... |++..|...+.-... ..|+.
T Consensus 23 ~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~--~~~~~ 96 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRE--TKGKL 96 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHH--HTTTS
T ss_pred HHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHH--Hccch
Confidence 4679999999999999987 47788899999999999999999999999998863 788888887764432 35666
Q ss_pred HHHHH----HHHHHHHhCCCCCC-HHHHHHHHHHHHcCCC---CCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHh-
Q 003913 235 DEACS----IYNRMIQLGGYQPR-PSLHNSLFRALVSKPG---GLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLH- 305 (787)
Q Consensus 235 ~~A~~----l~~~m~~~~g~~pd-~~t~~~ll~~~~~~~~---~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~- 305 (787)
++|.+ +|+.....-|..|+ ...|...+........ ....|+++.|..+|++.++.........+.......
T Consensus 97 ~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~ 176 (530)
T 2ooe_A 97 PSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEE 176 (530)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH
Confidence 66554 78877765455554 4556665554432100 001378999999999998732111112222211100
Q ss_pred ----------hhccCCCHHHHHHHHHHHH------HcC---CCCC--------HHHHHHHHHHHHhc----CCh----HH
Q 003913 306 ----------SYQDNIDKERISLLKKEMQ------QAG---FEEG--------KEVLLSVLRVCAKE----GDV----ED 350 (787)
Q Consensus 306 ----------~~~~~g~~~~a~~l~~~m~------~~g---~~p~--------~~t~~~li~~~~~~----g~~----~~ 350 (787)
.....+++..|..++.++. +.. +.|+ ...|...+...... ++. ..
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~ 256 (530)
T 2ooe_A 177 GINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKR 256 (530)
T ss_dssp HHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHH
T ss_pred hhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHH
Confidence 0012233455555554421 110 2232 12333333222211 122 24
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------cCChH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003913 351 AEKTWLRLLESDNGIPTPAFVYKMEAYAK-------IGEFM-------KSLEIFREMQERLGSASVPAYHKIIELLCKAE 416 (787)
Q Consensus 351 A~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 416 (787)
|..+|++.+...+ -+...|..++..+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.+.|
T Consensus 257 a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g 335 (530)
T 2ooe_A 257 VMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 335 (530)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 5555655555432 245555555555554 45554 56666666554212224555666666666666
Q ss_pred ChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHhcCCHHHHHHH
Q 003913 417 ETELTESLMKEFVETGMKPL--MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLES-LKNAGNIEKAEEI 493 (787)
Q Consensus 417 ~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~-~~~~g~~~~A~~l 493 (787)
++++|..+|+++++. .|+ ..+|..++..+.+.|++++|..+|+...+..+.+...|...+.. +...|+.++|..+
T Consensus 336 ~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~ 413 (530)
T 2ooe_A 336 KYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 413 (530)
T ss_dssp CHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHH
Confidence 666666666666652 332 23555666666666666666666666655322233333222211 2245666666666
Q ss_pred HHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 494 FNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 494 ~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
|++..+.. +.+...|..++..+.+.|+.++|..+|++.+.
T Consensus 414 ~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 414 FELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 66655542 33455666666666666666666666666655
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.1e-15 Score=158.12 Aligned_cols=270 Identities=12% Similarity=0.001 Sum_probs=212.9
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003913 300 GLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK 379 (787)
Q Consensus 300 ~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 379 (787)
++..+..+.+.|++++|..+|+++.+.. +.+..++..+..+|.+.|++++|...|+++.+..+. +..+|..+...|.+
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHc
Confidence 3444577888999999999999998863 346788999999999999999999999999987643 68899999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHH
Q 003913 380 IGEFMKSLEIFREMQERLGSAS-----------VPAYHKIIELLCKAEETELTESLMKEFVETGMK-PLMPSYINLTNMY 447 (787)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~-----------~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~li~~~ 447 (787)
.|++++|...|+++.+.. |+ ...+..+...+...|++++|..+++++.+..-. ++..++..+...|
T Consensus 146 ~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp TTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 999999999999998752 22 223344578899999999999999999986422 2688999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 003913 448 LNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAE 527 (787)
Q Consensus 448 ~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~ 527 (787)
...|++++|...|+++.+..+.+..+|+.+...|.+.|++++|+..|+++.+.. +.+..+|..+...|.+.|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999998777889999999999999999999999999999874 456899999999999999999999
Q ss_pred HHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhccee
Q 003913 528 KIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHM 595 (787)
Q Consensus 528 ~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 595 (787)
..|+++.+ ..|+.... ........+..+|..|..++...|+.+.+..+
T Consensus 302 ~~~~~al~----~~~~~~~~----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 349 (365)
T 4eqf_A 302 SNFLTALS----LQRKSRNQ----------------QQVPHPAISGNIWAALRIALSLMDQPELFQAA 349 (365)
T ss_dssp HHHHHHHH----HHHCC----------------------------CHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHH----hCcccCCC----------------cccchhhhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 99999987 34431000 00000011256788888888888877666544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.8e-15 Score=155.87 Aligned_cols=197 Identities=11% Similarity=-0.072 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC
Q 003913 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG---------IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGS-AS 401 (787)
Q Consensus 332 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~ 401 (787)
..++..+..+|...|++++|...++++.+..+. .....+..+...|.+.|++++|...|+++.+.... ++
T Consensus 133 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 212 (365)
T 4eqf_A 133 LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID 212 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC
Confidence 334444444455555555555555554443210 01233445677888888888888888888776322 15
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 003913 402 VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESL 481 (787)
Q Consensus 402 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~ 481 (787)
..+|..+...|...|++++|...++++.+.. +.+..++..+..+|.+.|++++|...|+++.+..+.+..+|..+...|
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC 291 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 7788888888888888888888888888754 446788888999999999999999999988886667788999999999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCC-------------CHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003913 482 KNAGNIEKAEEIFNHMHSDQTIGV-------------NTRSCNIILSAYLSSGDFVKAEKIYDL 532 (787)
Q Consensus 482 ~~~g~~~~A~~l~~~m~~~~~~~p-------------~~~t~~~li~~~~~~g~~~~A~~~~~~ 532 (787)
.+.|++++|...|+++.+.. | +...|..+..++...|+.+.|.++.++
T Consensus 292 ~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 292 INLGAYREAVSNFLTALSLQ---RKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHTCCHHHHHHHHHHHHHH---HCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHhC---cccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999999887642 2 267899999999999999888877664
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.1e-14 Score=160.30 Aligned_cols=412 Identities=12% Similarity=0.082 Sum_probs=258.8
Q ss_pred HHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHH
Q 003913 167 YEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQ 246 (787)
Q Consensus 167 ~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~ 246 (787)
++..++.. +.+..+|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+. +.|++++|..+|+++..
T Consensus 2 le~al~~~--P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~---~~~~~~~a~~~~~ral~ 74 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEI---KAKNYDKVEKLFQRCLM 74 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHTT
T ss_pred hhhHhhhC--CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHh
Confidence 45555554 568889999998 478999999999999999863 225678999999998 79999999999999997
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHH----HHHHHHHHHc-CCcc-CHHHHHHHHHHhh-------hccCCCH
Q 003913 247 LGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQA----EFIFHNLLTS-GLEI-QKDIYSGLIWLHS-------YQDNIDK 313 (787)
Q Consensus 247 ~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A----~~~~~~m~~~-~~~p-~~~~~~~li~~~~-------~~~~g~~ 313 (787)
. .|+...|...+....... |+.+.| .++|+..+.. |..| +...+...+.... +...|+.
T Consensus 75 ~---~p~~~lw~~~~~~~~~~~-----~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 146 (530)
T 2ooe_A 75 K---VLHIDLWKCYLSYVRETK-----GKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI 146 (530)
T ss_dssp T---CCCHHHHHHHHHHHHHHT-----TTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHH
T ss_pred c---CCChHHHHHHHHHHHHHc-----cchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHH
Confidence 3 478777766665333222 244444 4477776543 5444 3344444332211 1125778
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH-------------HhcCChHHHHHHHHHH------HhCC---CCCC-----
Q 003913 314 ERISLLKKEMQQAGFEEGKEVLLSVLRVC-------------AKEGDVEDAEKTWLRL------LESD---NGIP----- 366 (787)
Q Consensus 314 ~~a~~l~~~m~~~g~~p~~~t~~~li~~~-------------~~~g~~~~A~~~~~~m------~~~~---~~~~----- 366 (787)
++|..+|++..+....+....|....... .+.++++.|..++.++ .+.. +.|+
T Consensus 147 ~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 226 (530)
T 2ooe_A 147 TAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQE 226 (530)
T ss_dssp HHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCH
T ss_pred HHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhH
Confidence 99999999888731111123343322211 1234566677666652 2221 2232
Q ss_pred ---HHHHHHHHHHHHHc----CCh----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCChH-------HH
Q 003913 367 ---TPAFVYKMEAYAKI----GEF----MKSLEIFREMQERLGSASVPAYHKIIELLCK-------AEETE-------LT 421 (787)
Q Consensus 367 ---~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~-------~g~~~-------~A 421 (787)
...|...+...-.. ++. ++|..+|++..... +-+...|...+..+.+ .|+++ +|
T Consensus 227 ~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A 305 (530)
T 2ooe_A 227 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305 (530)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence 24555444332222 122 36777888877652 3367777777777765 67776 78
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 422 ESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNR-TIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 422 ~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
..++++..+.-.+-+...+..++..+.+.|++++|..+|+.+++..+.+. .+|..++..+.+.|++++|.++|++..+.
T Consensus 306 ~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 306 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 88888877522233577888888888888888888888888887433343 57888888888888888888888888875
Q ss_pred CCCCCCHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHH
Q 003913 501 QTIGVNTRSCNIILSA-YLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLL 579 (787)
Q Consensus 501 ~~~~p~~~t~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~l 579 (787)
. +.+...|...... +...|+.++|..+|++.++ ..|+. ..+|..+
T Consensus 386 ~--~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~----~~p~~----------------------------~~~~~~~ 431 (530)
T 2ooe_A 386 A--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK----KYGDI----------------------------PEYVLAY 431 (530)
T ss_dssp T--TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH----HHTTC----------------------------HHHHHHH
T ss_pred c--CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH----HCCCC----------------------------HHHHHHH
Confidence 3 2233333332222 3357888888888888876 23331 4566677
Q ss_pred hhhhhhccchhhcceeEE--EEEccCCcc----cHHHHHHHHHHchhhcCCCccc
Q 003913 580 LGGLCIESDEKRKRHMIR--FQFNENSRM----HSVLRRYLYDQYHEWLHPSFKV 628 (787)
Q Consensus 580 l~~~~~~~~~~~a~~~~~--~~~~p~~~~----~~~~l~~~y~~~g~~~~A~~~~ 628 (787)
+......|+.+.|+.+++ +...|.++. .+..........|+.+.+....
T Consensus 432 ~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~ 486 (530)
T 2ooe_A 432 IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 486 (530)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777777777766 333343332 3333344455556555543333
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.66 E-value=4e-13 Score=156.76 Aligned_cols=331 Identities=11% Similarity=0.041 Sum_probs=261.0
Q ss_pred ccCCcchHHHHHHHhhcCChhHHHHHHHHHHhcCC-CccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHH
Q 003913 141 WLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHW-YRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFH 219 (787)
Q Consensus 141 ~~~p~~~t~~~~~~~~~~~~~~A~~~~~~m~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~ 219 (787)
...|+.++..+-++...|.+.+|+++++.+.-.+. +..+....+.|+....|. +..+..++.++.... + ..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---AP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HH
Confidence 47799999999999999999999999999995542 335667777788777776 567777777766532 2 23
Q ss_pred HHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHH
Q 003913 220 ILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYS 299 (787)
Q Consensus 220 ~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 299 (787)
-+-..+. ..|.+++|..+|++... .....+.++... |++++|.++.++.. ++.++.
T Consensus 1054 eIA~Iai---~lglyEEAf~IYkKa~~------~~~A~~VLie~i---------~nldrAiE~Aervn------~p~vWs 1109 (1630)
T 1xi4_A 1054 DIANIAI---SNELFEEAFAIFRKFDV------NTSAVQVLIEHI---------GNLDRAYEFAERCN------EPAVWS 1109 (1630)
T ss_pred HHHHHHH---hCCCHHHHHHHHHHcCC------HHHHHHHHHHHH---------hhHHHHHHHHHhcC------CHHHHH
Confidence 3445555 78999999999998621 122234444422 58999999998662 255666
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003913 300 GLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK 379 (787)
Q Consensus 300 ~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 379 (787)
.+. .++.+.|++++|...|.+. -|...|.-++.+|.+.|++++|.+.+....+... +....+.++.+|++
T Consensus 1110 qLA--KAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A 1110 QLA--KAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 1179 (1630)
T ss_pred HHH--HHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHh
Confidence 555 8999999999999999653 4778899999999999999999999998877653 33334459999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003913 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLA 459 (787)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 459 (787)
.+++++...+. + .++...|..+...|...|++++|..+|... ..|..+..+|++.|+++.|.+.
T Consensus 1180 l~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A 1180 TNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred hcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHH
Confidence 99998644332 2 357778888999999999999999999985 4899999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCc
Q 003913 460 FSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYE 539 (787)
Q Consensus 460 ~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 539 (787)
+++. .+..+|..+-.+|...|++..|......+. .+...+..++.-|.+.|.+++|+.+++..+.
T Consensus 1244 arKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL~---- 1308 (1630)
T 1xi4_A 1244 ARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALG---- 1308 (1630)
T ss_pred HHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----
Confidence 9986 477999999999999999999998877533 3566778999999999999999999976653
Q ss_pred cCHHH
Q 003913 540 IESAW 544 (787)
Q Consensus 540 ~~p~~ 544 (787)
+++..
T Consensus 1309 LeraH 1313 (1630)
T 1xi4_A 1309 LERAH 1313 (1630)
T ss_pred cChhH
Confidence 66654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-15 Score=158.75 Aligned_cols=230 Identities=12% Similarity=-0.037 Sum_probs=177.3
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003913 300 GLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK 379 (787)
Q Consensus 300 ~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 379 (787)
++..+..+...|++++|..+|+++.+.. +.+..++..+..++...|++++|.+.++++.+.... +..++..+...|..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHH
Confidence 3444467788888999999998887753 236677888888888899999999999888887543 67788888888889
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003913 380 IGEFMKSLEIFREMQERLGSASVPAYHKI--------------IE-LLCKAEETELTESLMKEFVETGMKPLMPSYINLT 444 (787)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 444 (787)
.|++++|.+.|+++.+.... +...+..+ .. .+...|++++|...++++.+.. +.+..++..+.
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 99999999999888875322 23333333 22 3667788888888888888754 44678888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHH
Q 003913 445 NMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFV 524 (787)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 524 (787)
..|...|++++|...++.+.+..+.+..+|..+...|.+.|++++|.+.|+++.+.. +.+..+|..+...|.+.|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN--PGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhccHH
Confidence 888888888888888888887666778888888888888888888888888888764 456788888888888888888
Q ss_pred HHHHHHHHHHH
Q 003913 525 KAEKIYDLMCL 535 (787)
Q Consensus 525 ~A~~~~~~m~~ 535 (787)
+|.+.|+++.+
T Consensus 258 ~A~~~~~~a~~ 268 (327)
T 3cv0_A 258 LAAKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888875
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-13 Score=152.20 Aligned_cols=368 Identities=11% Similarity=-0.022 Sum_probs=245.0
Q ss_pred CHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHh----CC--CCCC-HHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHH
Q 003913 214 SEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQL----GG--YQPR-PSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNL 286 (787)
Q Consensus 214 d~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~----~g--~~pd-~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m 286 (787)
....||.|-..+. ..|++++|++.|++..+. .+ ..|+ .++|+.+-..+... |++++|...+++.
T Consensus 50 ~a~~yn~Lg~~~~---~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~------g~~~~A~~~~~ka 120 (472)
T 4g1t_A 50 KATMCNLLAYLKH---LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM------GRLSDVQIYVDKV 120 (472)
T ss_dssp CCHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHT------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHc------CChHHHHHHHHHH
Confidence 3456788777777 688888888888876542 11 1333 46788777777776 7999999999887
Q ss_pred HHcCC-------ccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH---HHhcCChHHHHHHH
Q 003913 287 LTSGL-------EIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG-KEVLLSVLRV---CAKEGDVEDAEKTW 355 (787)
Q Consensus 287 ~~~~~-------~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~li~~---~~~~g~~~~A~~~~ 355 (787)
.+... .-...++............+++++|...|++..+. .|+ ...+..+..+ +...++.++|.+.+
T Consensus 121 ~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~ 198 (472)
T 4g1t_A 121 KHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPL 198 (472)
T ss_dssp HHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHH
T ss_pred HHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 65310 11245555554445556677899999999998874 454 3444444444 44568888999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003913 356 LRLLESDNGIPTPAFVYKMEAYAK----IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVET 431 (787)
Q Consensus 356 ~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 431 (787)
++..+..+. +..++..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|...+++..+.
T Consensus 199 ~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 199 RQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp HHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 998887643 56667666655554 467889999999988763 346778999999999999999999999999985
Q ss_pred CCCCCHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003913 432 GMKPLMPSYINLTNMYLNL-------------------GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEE 492 (787)
Q Consensus 432 g~~p~~~t~~~li~~~~~~-------------------g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 492 (787)
. +-+..++..+..+|... +..+.|...|....+..+.+..+|..+...|...|++++|++
T Consensus 277 ~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 355 (472)
T 4g1t_A 277 I-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEY 355 (472)
T ss_dssp S-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHH
T ss_pred C-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHH
Confidence 4 34567777777666432 235678888888877566777889999999999999999999
Q ss_pred HHHHhhhCCCCCCCHH----HHHHHHH-HHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCC
Q 003913 493 IFNHMHSDQTIGVNTR----SCNIILS-AYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNL 567 (787)
Q Consensus 493 l~~~m~~~~~~~p~~~----t~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l 567 (787)
.|++..+.. |+.. .+..+.. .+.+.|++++|+..|++.++ +.|+....
T Consensus 356 ~~~kaL~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~----i~~~~~~~-------------------- 408 (472)
T 4g1t_A 356 YFQKEFSKE---LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK----INQKSREK-------------------- 408 (472)
T ss_dssp HHHHHHHSC---CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH----SCCCCHHH--------------------
T ss_pred HHHHHHhcC---CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCcccHHH--------------------
Confidence 999998864 3322 2333332 34578999999999999886 45542110
Q ss_pred chHHHHHHHHHHhhhhhhccchhhcceeEEEEEccCCcccHHHHHHHHHHchhhcCCCccccCCCCCcceE
Q 003913 568 SSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPYK 638 (787)
Q Consensus 568 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~~ 638 (787)
...+..+...+ +.+ +..+|+++.++..|+.+|...|++++|...++++++..|..
T Consensus 409 -----~~~~~~l~~~~------~~~-----l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~ 463 (472)
T 4g1t_A 409 -----EKMKDKLQKIA------KMR-----LSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLI 463 (472)
T ss_dssp -----HHHHHHHHHHH------HHH-----HHHCC-CTTHHHHHHHHHHHHHHCC----------------
T ss_pred -----HHHHHHHHHHH------HHH-----HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 01111111110 000 34578899999999999999999999999998888876654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-14 Score=151.20 Aligned_cols=197 Identities=6% Similarity=-0.072 Sum_probs=141.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003913 334 VLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLC 413 (787)
Q Consensus 334 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 413 (787)
.+..+...+...|++++|..+++++.+..+. +..++..+...|.+.|++++|...|+++.+.. +.+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 4556666777788888888888887776543 66777777888888888888888888877653 336677777888888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 003913 414 KAEETELTESLMKEFVETGMKPLMPSYINL--------------TN-MYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYL 478 (787)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li 478 (787)
..|++++|...++++.+.. +.+...+..+ .. .+...|++++|...++++.+..+.+..++..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 8888888888888877642 1122222222 22 366777888888888887775566777888888
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 479 ESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 479 ~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
..|.+.|++++|.+.++++.+.. +.+..+|..+...|...|++++|...|+++.+
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888888877764 44677788888888888888888888888776
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.1e-14 Score=146.48 Aligned_cols=246 Identities=10% Similarity=0.042 Sum_probs=202.7
Q ss_pred hhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003913 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEK 353 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 353 (787)
|++..|...++.... ..|+...-........+...|+.+.|+..++. .-.|+..++..+...+...|+.++|.+
T Consensus 13 g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 13 GSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp TCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 689999988876543 33444332334445888999999999987654 245677788999999999999999999
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003913 354 TWLRLLESDNGI-PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETG 432 (787)
Q Consensus 354 ~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 432 (787)
.++++...+..| +...+..+...|.+.|++++|++.|++ +.+...+..++..|.+.|++++|...++++.+..
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 999999876545 556677788999999999999999987 4588899999999999999999999999999864
Q ss_pred CCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHH
Q 003913 433 MKPLMPS---YINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRS 509 (787)
Q Consensus 433 ~~p~~~t---~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t 509 (787)
|+... ...++..+...|++++|..+|+++.+..+.+...|+.+..+|.+.|++++|++.|++..+.. +-+..+
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--p~~~~~ 236 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD--SGHPET 236 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH
Confidence 55321 12233445556899999999999999888899999999999999999999999999999875 568889
Q ss_pred HHHHHHHHHcCCCHHH-HHHHHHHHHH
Q 003913 510 CNIILSAYLSSGDFVK-AEKIYDLMCL 535 (787)
Q Consensus 510 ~~~li~~~~~~g~~~~-A~~~~~~m~~ 535 (787)
+..++..+...|+.++ +.++++++++
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999976 6789999987
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.5e-16 Score=164.52 Aligned_cols=285 Identities=11% Similarity=0.050 Sum_probs=130.6
Q ss_pred hhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003913 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEK 353 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 353 (787)
|++++|.++++++. ++.+++.+. .++.+.|++++|.+.|.+ .+|..+|..++.++...|++++|.+
T Consensus 17 ~~ld~A~~fae~~~------~~~vWs~La--~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 17 GNLDRAYEFAERCN------EPAVWSQLA--KAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCC------ChHHHHHHH--HHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 58999999999983 234556555 999999999999999965 3588899999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003913 354 TWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGM 433 (787)
Q Consensus 354 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 433 (787)
+++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88777764 3457889999999999999999998885 378889999999999999999999999977
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHH
Q 003913 434 KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNII 513 (787)
Q Consensus 434 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~l 513 (787)
..|..|+.++.+.|++++|.+.+.++ .++.+|..++.+|+..|+++.|......+. +.|+ -...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~----~~ad--~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV----VHAD--ELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT----TCHH--HHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHH----hCHh--hHHHH
Confidence 37999999999999999999999998 389999999999999999999977666543 2243 35579
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcc
Q 003913 514 LSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKR 593 (787)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~ 593 (787)
+..|.+.|++++|+.+++..+. .++..+. ..+-..++.+..+-+++.+..
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~----le~ah~~--------------------------~ftel~il~~ky~p~k~~ehl 263 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALG----LERAHMG--------------------------MFTELAILYSKFKPQKMREHL 263 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTT----STTCCHH--------------------------HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhC----CcHHHHH--------------------------HHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999999998774 4443211 112222222222233333444
Q ss_pred eeEE--EEEcc-----CCcccHHHHHHHHHHchhhcCCCccccCC
Q 003913 594 HMIR--FQFNE-----NSRMHSVLRRYLYDQYHEWLHPSFKVSDG 631 (787)
Q Consensus 594 ~~~~--~~~~p-----~~~~~~~~l~~~y~~~g~~~~A~~~~~~~ 631 (787)
+.+. +.+.| .+.-.+.-++.+|...++|+.|...++..
T Consensus 264 ~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 264 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 4333 44444 56667778888899999999887766443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.4e-13 Score=145.77 Aligned_cols=379 Identities=13% Similarity=0.032 Sum_probs=244.3
Q ss_pred ccCHHHHHHHHHHHHccCChhHHHHHHHHHHHC-----C--CCC-CHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhC
Q 003913 177 RFDFALATKLADYMGKERKFAKCRDIFDDIINQ-----G--RVP-SEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLG 248 (787)
Q Consensus 177 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-----g--~~p-d~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~ 248 (787)
......||.|...+...|++++|++.|++..+. + ..| ..++|+.+-..|. ..|++++|+..|++..+..
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~---~~g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY---HMGRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH---HcCChHHHHHHHHHHHHHh
Confidence 344678999999999999999999999876541 1 122 4578999999998 7999999999999876420
Q ss_pred -----CCCCC-HHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHH-HhhhccCCCHHHHHHHHH
Q 003913 249 -----GYQPR-PSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIW-LHSYQDNIDKERISLLKK 321 (787)
Q Consensus 249 -----g~~pd-~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~-~~~~~~~g~~~~a~~l~~ 321 (787)
...++ ..++...-.++..... +++++|...|++.++..+. +...+..+.. ...+...++.++|++.++
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~ 199 (472)
T 4g1t_A 125 EKFSSPYRIESPELDCEEGWTRLKCGG----NQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLR 199 (472)
T ss_dssp HHSCCSSCCCCHHHHHHHHHHHHHHCT----THHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHH
T ss_pred HhcccccchhhHHHHHHHHHHHHHHcc----ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 11222 2344433333333211 4899999999999887643 3333333332 233455667778888888
Q ss_pred HHHHcCCCC-CHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003913 322 EMQQAGFEE-GKEVLLSVLRVCAK----EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER 396 (787)
Q Consensus 322 ~m~~~g~~p-~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 396 (787)
+..+. .| +..++..+...+.. .|++++|.+.+++.....+. +..++..+...|.+.|++++|...|++..+.
T Consensus 200 ~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 200 QAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp HHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 87764 34 45566655555544 56788999999998887654 6788999999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhc-------------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003913 397 LGSASVPAYHKIIELLCKA-------------------EETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLH 457 (787)
Q Consensus 397 g~~p~~~t~~~li~~~~~~-------------------g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 457 (787)
.. -+..++..+...|... +..++|...+++..+.. +.+..++..+...|...|++++|.
T Consensus 277 ~p-~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~ 354 (472)
T 4g1t_A 277 IP-NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAE 354 (472)
T ss_dssp ST-TCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred CC-ChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHH
Confidence 32 2566677666655332 33567888888877754 344667889999999999999999
Q ss_pred HHHHHHHhcCCCCHH---HHHHHHH-HHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003913 458 LAFSECLEKCRPNRT---IYGIYLE-SLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533 (787)
Q Consensus 458 ~~~~~m~~~~~p~~~---~~~~li~-~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 533 (787)
..|++.++..+++.. .+..+.. .+...|+.++|+..|++..+.. |+...+... ...+.++++..
T Consensus 355 ~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~---~~~~~~~~~---------~~~l~~~~~~~ 422 (472)
T 4g1t_A 355 YYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN---QKSREKEKM---------KDKLQKIAKMR 422 (472)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC---CCCHHHHHH---------HHHHHHHHHHH
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---cccHHHHHH---------HHHHHHHHHHH
Confidence 999999873332222 2333332 3456799999999999999853 554333222 23344455554
Q ss_pred HHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHH
Q 003913 534 CLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLR 611 (787)
Q Consensus 534 ~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l 611 (787)
++ .+|. +..+|..|...+...|+.++|...++ +++.|.++.+...+
T Consensus 423 l~----~~p~----------------------------~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 423 LS----KNGA----------------------------DSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HH----HCC-----------------------------CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HH----hCCC----------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 43 3444 25678899999999999999999998 77778777766555
Q ss_pred H
Q 003913 612 R 612 (787)
Q Consensus 612 ~ 612 (787)
|
T Consensus 471 G 471 (472)
T 4g1t_A 471 G 471 (472)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.7e-13 Score=138.33 Aligned_cols=211 Identities=10% Similarity=0.096 Sum_probs=135.0
Q ss_pred hhhccCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 003913 305 HSYQDNIDKERISLLKKEMQQAGFEEG-KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEF 383 (787)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 383 (787)
..+...++.++|++.++++...+..|+ ...+..+..++...|++++|.+.+++ ..+...+..++..|.+.|++
T Consensus 73 ~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~ 146 (291)
T 3mkr_A 73 EYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRL 146 (291)
T ss_dssp HHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCH
T ss_pred HHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCH
Confidence 555566666666666666666555453 34445555667777777777777765 23566777777777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003913 384 MKSLEIFREMQERLGSASVPAY---HKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAF 460 (787)
Q Consensus 384 ~~A~~~~~~m~~~g~~p~~~t~---~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 460 (787)
++|.+.|+++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+..+++.+..+|.+.|++++|...|
T Consensus 147 ~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l 223 (291)
T 3mkr_A 147 DLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVL 223 (291)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777777653 332211 122233334477777777777777752 556777777777777777777777777
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 003913 461 SECLEKCRPNRTIYGIYLESLKNAGNIEK-AEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIY 530 (787)
Q Consensus 461 ~~m~~~~~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~ 530 (787)
++.++..+.+..++..++..+...|+.++ |.++++++.+.. |+... +.+...+.+.++++..-|
T Consensus 224 ~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~---P~~~~---~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 224 QEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH---RSHPF---IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---TTCHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---CCChH---HHHHHHHHHHHHHHHHHc
Confidence 77777556677777777777777777755 567777777653 43221 233455555666655443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-12 Score=131.66 Aligned_cols=218 Identities=12% Similarity=0.073 Sum_probs=192.4
Q ss_pred HhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--C----HHHHHHHHHHH
Q 003913 304 LHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGI--P----TPAFVYKMEAY 377 (787)
Q Consensus 304 ~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~----~~~~~~li~~~ 377 (787)
+..+...|++++|...|++..+.. .+..++..+..++...|++++|.+.+++..+..... + ..+|..+...|
T Consensus 12 g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (258)
T 3uq3_A 12 GNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAY 89 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHH
Confidence 477788899999999999999887 788899999999999999999999999988764321 2 57888999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003913 378 AKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLH 457 (787)
Q Consensus 378 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 457 (787)
.+.|++++|...|++.... .|+. ..+...|++++|...++++.+.. +.+...+..+...|...|++++|.
T Consensus 90 ~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~ 159 (258)
T 3uq3_A 90 HKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAV 159 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999999999999886 3453 34667788999999999998853 335678899999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 458 LAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 458 ~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
..|+++.+..+.+..+|..+...|.+.|++++|+..|++..+.. +.+..+|..+...|.+.|++++|...|++..+
T Consensus 160 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 160 KAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999998777789999999999999999999999999999875 56789999999999999999999999999987
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-12 Score=128.79 Aligned_cols=200 Identities=16% Similarity=0.118 Sum_probs=162.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003913 329 EEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKI 408 (787)
Q Consensus 329 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 408 (787)
+++...+..+...+.+.|++++|...|++.++..+. +...+..+...|.+.|++++|+..|++..+.. +-+...|..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 456677888888999999999999999999988754 78888999999999999999999999998764 2367788899
Q ss_pred HHHHHhc-----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 003913 409 IELLCKA-----------EETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIY 477 (787)
Q Consensus 409 i~~~~~~-----------g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~l 477 (787)
...+... |++++|...+++.++.. +-+..++..+..+|...|++++|...|++.++.. .+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHH
Confidence 9999999 99999999999999854 3357889999999999999999999999999844 889999999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
...|...|++++|+..|++..+.. |.+...+..+...+.+.|++++|+..|++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999875 5678899999999999999999999998764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3.9e-12 Score=127.63 Aligned_cols=200 Identities=15% Similarity=0.062 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL 411 (787)
Q Consensus 332 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 411 (787)
...+..+...+...|++++|.+.++++.+.... +..++..+...|.+.|++++|.+.|+++.+.. +.+...|..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 456778888899999999999999999887643 67888899999999999999999999998764 3367888999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 003913 412 LCKAEETELTESLMKEFVETGMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKA 490 (787)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A 490 (787)
|...|++++|..+++++.+.+..| +...+..+..+|...|++++|...|+++.+..+.+..++..+...|.+.|++++|
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998744445 4678888999999999999999999999886677889999999999999999999
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 491 EEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 491 ~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
...|+++.+.. +.+...+..+...+...|++++|.++++++.+
T Consensus 195 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 195 RQYYDLFAQGG--GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHTTS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999998874 56788899999999999999999999999987
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.3e-13 Score=135.75 Aligned_cols=235 Identities=9% Similarity=-0.025 Sum_probs=196.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CCC----HHHH
Q 003913 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLG--SAS----VPAY 405 (787)
Q Consensus 332 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~t~ 405 (787)
..++..+...+...|++++|...++++.+.. .+..+|..+..+|...|++++|.+.|++..+... .++ ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3567888889999999999999999999887 6789999999999999999999999999876421 122 5789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 003913 406 HKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG 485 (787)
Q Consensus 406 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g 485 (787)
..+...+...|++++|...++++.+. .|+. ..+.+.|++++|...++.+.+..+.+...|..+...|...|
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhc
Confidence 99999999999999999999999984 3553 45777889999999999998866667889999999999999
Q ss_pred CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhccccccccccc
Q 003913 486 NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSL 565 (787)
Q Consensus 486 ~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~ 565 (787)
++++|...|+++.+.. +.+..+|..+...|.+.|++++|+..|++.++ ..|+.
T Consensus 154 ~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~~~~--------------------- 206 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIE----KDPNF--------------------- 206 (258)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC---------------------
T ss_pred CHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCHHH---------------------
Confidence 9999999999999875 56789999999999999999999999999987 34442
Q ss_pred CCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEc------cCCcccHHHH
Q 003913 566 NLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFN------ENSRMHSVLR 611 (787)
Q Consensus 566 ~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~------p~~~~~~~~l 611 (787)
..+|..+...+...|+.+.|...++ +.+. |++......+
T Consensus 207 -------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l 253 (258)
T 3uq3_A 207 -------VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 253 (258)
T ss_dssp -------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHH
Confidence 4567777888888888888887776 5555 5554444444
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-11 Score=121.72 Aligned_cols=201 Identities=13% Similarity=0.061 Sum_probs=170.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003913 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410 (787)
Q Consensus 331 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (787)
+..++..+...+...|++++|.+.++++.+.... +..++..+...|...|++++|.+.|+++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3456778888889999999999999988887643 57788889999999999999999999988763 336778888999
Q ss_pred HHHhc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH
Q 003913 411 LLCKA-EETELTESLMKEFVETGMKPL-MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIE 488 (787)
Q Consensus 411 ~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~ 488 (787)
.+... |++++|...++++.+.+..|+ ..++..+..+|...|++++|...|.++.+..+.+..++..+...|.+.|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 99999 999999999999988433443 6788889999999999999999999998866677889999999999999999
Q ss_pred HHHHHHHHhhhCCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 489 KAEEIFNHMHSDQTIG-VNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 489 ~A~~l~~~m~~~~~~~-p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+|.+.++++.+.. + .+...+..+...+...|+.++|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRV--EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 9999999998864 4 5778888888888999999999999999875
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-12 Score=128.35 Aligned_cols=200 Identities=13% Similarity=0.099 Sum_probs=157.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003913 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410 (787)
Q Consensus 331 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (787)
...+|..+...+...|++++|...++++.+.... +..++..+...|.+.|++++|.+.|+++.+.. +.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4556777778888899999999999998886543 67888888999999999999999999988763 336788888999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 003913 411 LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKA 490 (787)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A 490 (787)
.+...|++++|...++++.+.. +.+..++..+...|.+.|++++|...++++.+..+.+..++..+...|.+.|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999998864 456788899999999999999999999999886677889999999999999999999
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 491 EEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 491 ~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
...|+++.+.. +.+..+|..+...|.+.|++++|.+.|+++.+
T Consensus 179 ~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 179 LSQFAAVTEQD--PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 99999998874 55788999999999999999999999999987
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=4.7e-12 Score=128.70 Aligned_cols=220 Identities=15% Similarity=0.071 Sum_probs=152.7
Q ss_pred ccCCCHHHHHHHHHHHHHcCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 003913 308 QDNIDKERISLLKKEMQQAGFE--E-GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFM 384 (787)
Q Consensus 308 ~~~g~~~~a~~l~~~m~~~g~~--p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 384 (787)
...|++++|...|+++.+.... | +..++..+...+...|++++|...|+++.+..+. +..+|..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHH
Confidence 4445666666666666654321 1 3456677777777788888888888777776543 5677777788888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003913 385 KSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL 464 (787)
Q Consensus 385 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 464 (787)
+|.+.|++..+.. +.+..+|..+...|...|++++|...++++.+. .|+.......+..+...|++++|...+....
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8888888777652 225667777778888888888888888887764 3444444444455566678888888887777
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 465 EKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN-----TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 465 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~-----~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
...+++...+. ++..+...++.++|.+.+++..... |+ ..+|..+...|.+.|++++|...|++..+
T Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 172 EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDN---TSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSH---HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhccc---ccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 65555555554 5666677777788888888776653 22 46777788888888888888888888875
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-10 Score=134.93 Aligned_cols=311 Identities=13% Similarity=0.106 Sum_probs=240.5
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g 232 (787)
.|...|.+++|..+|+.... .....+.++. ..+++++|.++.++.. +..+|..+-.++. +.|
T Consensus 1058 Iai~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql---~~G 1119 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQL---QKG 1119 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHH---hCC
Confidence 45677888888888887531 2222334433 6678888888888652 5778999999999 899
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCC
Q 003913 233 CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNID 312 (787)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~ 312 (787)
++++|+..|.+. -|...|.-+..++.+. |++++|.+.+....+..-.|..++ .++ .+|++.++
T Consensus 1120 ~~kEAIdsYiKA-------dD~say~eVa~~~~~l------GkyEEAIeyL~mArk~~~e~~Idt--~La--faYAKl~r 1182 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA-------DDPSSYMEVVQAANTS------GNWEELVKYLQMARKKARESYVET--ELI--FALAKTNR 1182 (1630)
T ss_pred CHHHHHHHHHhc-------CChHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhcccccccH--HHH--HHHHhhcC
Confidence 999999999553 3456677788888776 699999999998877663333333 454 77888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003913 313 KERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFRE 392 (787)
Q Consensus 313 ~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 392 (787)
+++..... . .++...|..+...|...|++++|..+|... ..|..+...|++.|++++|.+.+++
T Consensus 1183 leele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1183 LAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred HHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 87644432 2 456777888999999999999999999874 4889999999999999999999987
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 003913 393 MQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRT 472 (787)
Q Consensus 393 m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~ 472 (787)
.. +..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++..+...+-...
T Consensus 1247 A~------n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~g 1315 (1630)
T 1xi4_A 1247 AN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMG 1315 (1630)
T ss_pred hC------CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhH
Confidence 62 778999999999999999988876553 3445667889999999999999999999888764466677
Q ss_pred HHHHHHHHHHhc--CCHHHHHHHHHHhhhCCCCCC------CHHHHHHHHHHHHcCCCHHHHHH
Q 003913 473 IYGIYLESLKNA--GNIEKAEEIFNHMHSDQTIGV------NTRSCNIILSAYLSSGDFVKAEK 528 (787)
Q Consensus 473 ~~~~li~~~~~~--g~~~~A~~l~~~m~~~~~~~p------~~~t~~~li~~~~~~g~~~~A~~ 528 (787)
.|+-|...|++. +++.++.++|..-.. ++| +...|.-++-.|.+.|+++.|..
T Consensus 1316 mftELaiLyaKy~peklmEhlk~f~~rin---i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1316 MFTELAILYSKFKPQKMREHLELFWSRVN---IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhcc---cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 888888888875 467777777775433 334 56789999999999999999983
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-11 Score=122.61 Aligned_cols=202 Identities=6% Similarity=-0.022 Sum_probs=176.3
Q ss_pred HHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003913 297 IYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEA 376 (787)
Q Consensus 297 ~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 376 (787)
...+...+..+...|++++|...|+++.+.. +.+..++..+...|...|++++|.+.++++.+.... +..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 3344444577888999999999999998763 336788999999999999999999999999987643 67889999999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003913 377 YAKIGEFMKSLEIFREMQERLGSA-SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDR 455 (787)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 455 (787)
|...|++++|.+.|+++...+..| +...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998743344 45678889999999999999999999999864 4468899999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 456 LHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 456 a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
|...++.+.+..+.+...+..+...|.+.|++++|.+.++++.+..
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999998777889999999999999999999999999999874
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.3e-12 Score=122.70 Aligned_cols=196 Identities=12% Similarity=0.045 Sum_probs=163.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003913 365 IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLT 444 (787)
Q Consensus 365 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 444 (787)
++...+..+...+.+.|++++|...|++..+.. +.+...|..+...+.+.|++++|...+++.++.. +.+..++..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 466788899999999999999999999998763 3378889999999999999999999999999864 44678999999
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHH
Q 003913 445 NMYLNL-----------GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNII 513 (787)
Q Consensus 445 ~~~~~~-----------g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~l 513 (787)
.+|... |++++|...|++.++..+.+...|..+...|...|++++|+..|++..+.. .+...|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE---DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---cchHHHHHH
Confidence 999999 999999999999998767789999999999999999999999999999874 688999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcc
Q 003913 514 LSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKR 593 (787)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~ 593 (787)
..+|...|++++|+..|++.++ .+|+. ..++..+...+...|+.++|.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~----~~P~~----------------------------~~~~~~la~~~~~~g~~~~A~ 205 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALE----QAPKD----------------------------LDLRVRYASALLLKGKAEEAA 205 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH----HSTTC----------------------------HHHHHHHHHHHTC--------
T ss_pred HHHHHHcCCHHHHHHHHHHHHH----hCCCC----------------------------hHHHHHHHHHHHHccCHHHHH
Confidence 9999999999999999999997 56652 566777778888888888887
Q ss_pred eeEE
Q 003913 594 HMIR 597 (787)
Q Consensus 594 ~~~~ 597 (787)
..++
T Consensus 206 ~~~~ 209 (217)
T 2pl2_A 206 RAAA 209 (217)
T ss_dssp ----
T ss_pred HHHH
Confidence 7654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.1e-12 Score=129.92 Aligned_cols=255 Identities=8% Similarity=0.021 Sum_probs=199.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHH
Q 003913 334 VLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS--VPAYHKIIEL 411 (787)
Q Consensus 334 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~ 411 (787)
.+......+...|++++|...+++..+..+. +..++..+...|...|++++|+..|++..+....|+ ..+|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 4455667788999999999999999887653 455788888999999999999999999987432222 3348889999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHhcCCHHHH
Q 003913 412 LCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYL-ESLKNAGNIEKA 490 (787)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li-~~~~~~g~~~~A 490 (787)
+...|++++|...+++..+.. +.+..++..+...|...|++++|...|++..+..+.+..+|..+. ..|. .+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHHHH
Confidence 999999999999999998854 345689999999999999999999999999887677888898888 5554 5699999
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCC
Q 003913 491 EEIFNHMHSDQTIGVNTRSCNIILSAYLSSGD---FVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNL 567 (787)
Q Consensus 491 ~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l 567 (787)
.+.|+++.+.. +.+...|..+...+...|+ +++|...|++..+..- ..|+.
T Consensus 162 ~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~----------------------- 215 (272)
T 3u4t_A 162 DSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA-PGGAK----------------------- 215 (272)
T ss_dssp HHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG-GGGGG-----------------------
T ss_pred HHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh-ccccc-----------------------
Confidence 99999999874 4567888888999988888 8889999998876210 11110
Q ss_pred chHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHH
Q 003913 568 SSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQ 617 (787)
Q Consensus 568 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~ 617 (787)
.......+|..+...+...|+.+.|...++ +.++|+++.+.-.+..+...
T Consensus 216 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 216 YKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 001124678888888999999999999988 78889988777666555443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.1e-10 Score=116.61 Aligned_cols=216 Identities=6% Similarity=-0.015 Sum_probs=193.4
Q ss_pred HhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003913 304 LHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAK----EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK 379 (787)
Q Consensus 304 ~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 379 (787)
+..+...|++++|...|++..+. -+...+..+...|.. .+++++|.+.|++..+.+ +..++..+...|..
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 86 (273)
T 1ouv_A 13 GAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYS 86 (273)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhC
Confidence 36677788999999999999883 356788888999999 999999999999999987 78899999999999
Q ss_pred ----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--
Q 003913 380 ----IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCK----AEETELTESLMKEFVETGMKPLMPSYINLTNMYLN-- 449 (787)
Q Consensus 380 ----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~-- 449 (787)
.+++++|+..|++..+.+ +..++..+...|.. .+++++|...|++..+.+ +..++..+...|..
T Consensus 87 g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 160 (273)
T 1ouv_A 87 GQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGR 160 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred CCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCC
Confidence 999999999999999875 78889999999999 999999999999999876 67788889999998
Q ss_pred --cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc----
Q 003913 450 --LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN----AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS---- 519 (787)
Q Consensus 450 --~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~---- 519 (787)
.+++++|...|++..+. .+...+..+...|.. .+++++|++.|++..+.+ +...+..+...|.+
T Consensus 161 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~l~~~~~~g~~~ 234 (273)
T 1ouv_A 161 GTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE----NGGGCFNLGAMQYNGEGV 234 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTTSSS
T ss_pred CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC----CHHHHHHHHHHHHcCCCc
Confidence 99999999999998873 357888999999999 999999999999999986 47888899999999
Q ss_pred CCCHHHHHHHHHHHHHcC
Q 003913 520 SGDFVKAEKIYDLMCLKK 537 (787)
Q Consensus 520 ~g~~~~A~~~~~~m~~~g 537 (787)
.+++++|.+.|++..+.|
T Consensus 235 ~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 235 TRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SCCSTTHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHcC
Confidence 999999999999999854
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.43 E-value=7e-11 Score=115.75 Aligned_cols=201 Identities=10% Similarity=0.016 Sum_probs=173.8
Q ss_pred HHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003913 298 YSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAY 377 (787)
Q Consensus 298 ~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 377 (787)
..+...+..+...|++++|...|+++.+.. +.+..++..+...|...|++++|.+.++++.+.... +..++..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHH
Confidence 334444578888999999999999998753 335778999999999999999999999999987643 678899999999
Q ss_pred HHc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003913 378 AKI-GEFMKSLEIFREMQERLGSAS-VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDR 455 (787)
Q Consensus 378 ~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 455 (787)
... |++++|...|+++.+.+..|+ ...|..+...+...|++++|...++++.+.. +.+..++..+..+|.+.|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 999 999999999999988333343 5788899999999999999999999999864 4458899999999999999999
Q ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 456 LHLAFSECLEKCR-PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 456 a~~~~~~m~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
|...++.+.+..+ .+...+..+...+...|+.++|..+++.+.+..
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 9999999988556 788899999999999999999999999998764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-11 Score=124.80 Aligned_cols=246 Identities=11% Similarity=-0.022 Sum_probs=192.3
Q ss_pred hhHHHHHHHHHHHHHcCCcc-CHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003913 274 YYLQQAEFIFHNLLTSGLEI-QKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAE 352 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 352 (787)
|++++|...|+++.+..... ......+...+..+...|++++|...|++..+.. +.+..++..+...|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 79999999999999874322 2234444455688899999999999999998863 336788999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003913 353 KTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETG 432 (787)
Q Consensus 353 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 432 (787)
+.++++.+..+. +..++..+...|.+.|++++|...|+++.+. .|+...+...+..+...|++++|...+++.....
T Consensus 98 ~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 999999987643 5788999999999999999999999999876 3444444555566677899999999998888753
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHH
Q 003913 433 MKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCR----PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTR 508 (787)
Q Consensus 433 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~----p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~ 508 (787)
+++...+ .++..+...++.++|...+....+..+ .+..+|..+...|.+.|++++|...|++..... |+.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~- 248 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN---VHN- 248 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---CTT-
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---chh-
Confidence 3444444 477778888899999999998875211 125789999999999999999999999999864 432
Q ss_pred HHHHHHHHHHcCCCHHHHHHHH
Q 003913 509 SCNIILSAYLSSGDFVKAEKIY 530 (787)
Q Consensus 509 t~~~li~~~~~~g~~~~A~~~~ 530 (787)
+.....++...|++++|++.+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 333355777888899888776
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=4.3e-11 Score=127.29 Aligned_cols=228 Identities=9% Similarity=0.032 Sum_probs=197.1
Q ss_pred hhhccCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 003913 305 HSYQDNIDKERISLLKKEMQQAGFEE-GKEVLLSVLRVCAKEGD-VEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE 382 (787)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 382 (787)
..+...|++++|+..+++..+. .| +..+|+.+..++...|+ +++|...++++++..+. +..+|+.+..+|.+.|+
T Consensus 105 ~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~~~g~ 181 (382)
T 2h6f_A 105 AVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWLRD 181 (382)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHccC
Confidence 5667788999999999999884 55 46788999999999997 99999999999998765 78899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHH-----
Q 003913 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLN-LGMHDRL----- 456 (787)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~-~g~~~~a----- 456 (787)
+++|+..|+++++.... +...|..+..++...|++++|+..++++++.. +-+..+|+.+..+|.+ .|..++|
T Consensus 182 ~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~e 259 (382)
T 2h6f_A 182 PSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLERE 259 (382)
T ss_dssp CTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 99999999999987433 78899999999999999999999999999865 4468899999999999 6665777
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCC---------CHHH
Q 003913 457 HLAFSECLEKCRPNRTIYGIYLESLKNAG--NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSG---------DFVK 525 (787)
Q Consensus 457 ~~~~~~m~~~~~p~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g---------~~~~ 525 (787)
+..|++.++..+-+...|+.+...|.+.| ++++|++.+.++ +.. +.+...+..+...|.+.| ..++
T Consensus 260 l~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~--p~~~~al~~La~~~~~~~~~~~~~~~~~~~~ 336 (382)
T 2h6f_A 260 VQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS--HSSPYLIAFLVDIYEDMLENQCDNKEDILNK 336 (382)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT--CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC--CCCHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 58888888866778999999999999988 689999999998 443 567889999999999874 3599
Q ss_pred HHHHHHHH-HHcCCccCHHH
Q 003913 526 AEKIYDLM-CLKKYEIESAW 544 (787)
Q Consensus 526 A~~~~~~m-~~~g~~~~p~~ 544 (787)
|+++|+++ .+ .+|..
T Consensus 337 A~~~~~~l~~~----~DP~r 352 (382)
T 2h6f_A 337 ALELCEILAKE----KDTIR 352 (382)
T ss_dssp HHHHHHHHHHT----TCGGG
T ss_pred HHHHHHHHHHH----hCchh
Confidence 99999999 65 67764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-11 Score=122.25 Aligned_cols=210 Identities=14% Similarity=0.074 Sum_probs=168.4
Q ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003913 299 SGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYA 378 (787)
Q Consensus 299 ~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 378 (787)
..+..+..+...|++++|..+|+++.+. .+.+..++..+...+...|++++|.+.++++.+.... +..++..+...|.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEE-NKEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHHH
Confidence 3334447788889999999999999874 2336788889999999999999999999999987643 6788999999999
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003913 379 KIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHL 458 (787)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 458 (787)
..|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|.+.|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998864 3477889999999999999999999999998864 4568899999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHH
Q 003913 459 AFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIIL 514 (787)
Q Consensus 459 ~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li 514 (787)
.|+.+.+..+.+..+|..+...|.+.|++++|.+.|+++.+.. +.+...+..+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~ 234 (243)
T 2q7f_A 181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ--PDHMLALHAKK 234 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC--TTCHHHHHHHT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC--cchHHHHHHHH
Confidence 9999988667789999999999999999999999999999874 44555555543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=5e-12 Score=134.52 Aligned_cols=249 Identities=9% Similarity=0.024 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003913 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE-FMKSLEIFREMQERLGSASVPAYHKIIE 410 (787)
Q Consensus 332 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (787)
...|..+..++.+.|++++|.+.++++++..+. +..+|+.+..+|.+.|+ +++|+..|++....... +...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 456778888899999999999999999998764 78899999999999997 99999999999987433 7889999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCCHHH
Q 003913 411 LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN-AGNIEK 489 (787)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~-~g~~~~ 489 (787)
++...|++++|+..|+++++.. +-+..+|..+..++.+.|++++|+..|+++++..+.+..+|+.+..+|.+ .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchH
Confidence 9999999999999999999864 44789999999999999999999999999999778899999999999999 666577
Q ss_pred H-----HHHHHHhhhCCCCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccc
Q 003913 490 A-----EEIFNHMHSDQTIGVNTRSCNIILSAYLSSG--DFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKP 562 (787)
Q Consensus 490 A-----~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~ 562 (787)
| ++.|++.+... +-+...|+.+...+.+.| ++++|++.+.++ + .+|+.
T Consensus 254 A~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~----~~p~~------------------ 308 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q----PSHSS------------------ 308 (382)
T ss_dssp HHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T----TTCCC------------------
T ss_pred HHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c----cCCCC------------------
Confidence 7 58899998874 557889999999999988 689999999887 3 34432
Q ss_pred cccCCchHHHHHHHHHHhhhhhhcc---------chhhcceeEE-E--EEccCCcccHHHHHHHHHHc
Q 003913 563 VSLNLSSEQRENLIGLLLGGLCIES---------DEKRKRHMIR-F--QFNENSRMHSVLRRYLYDQY 618 (787)
Q Consensus 563 ~~~~l~~~~~~~~~~~ll~~~~~~~---------~~~~a~~~~~-~--~~~p~~~~~~~~l~~~y~~~ 618 (787)
..++..|...+...+ ..++|..+++ + +++|.....|..++..+...
T Consensus 309 ----------~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 309 ----------PYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 345555666665543 2466776666 3 67888888888888777654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.1e-11 Score=121.59 Aligned_cols=232 Identities=12% Similarity=0.052 Sum_probs=190.7
Q ss_pred HhhhccCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHc
Q 003913 304 LHSYQDNIDKERISLLKKEMQQAGFEE-GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGI--PTPAFVYKMEAYAKI 380 (787)
Q Consensus 304 ~~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~ 380 (787)
+..+...|++++|...|++..+. .| +...+..+..+|...|++++|...+++..+....+ ...+|..+...|...
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAK--KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHT--TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 36677899999999999999875 34 34478888889999999999999999999844222 234588899999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003913 381 GEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAF 460 (787)
Q Consensus 381 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 460 (787)
|++++|.+.|++..+... .+..+|..+...|...|++++|...+++..+.. +.+..++..+...+...+++++|...|
T Consensus 88 ~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988643 366789999999999999999999999988752 445777888873444456999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCCC------HHHHHHHHHHHHcCCCHHHHHHHHH
Q 003913 461 SECLEKCRPNRTIYGIYLESLKNAGN---IEKAEEIFNHMHSDQTIGVN------TRSCNIILSAYLSSGDFVKAEKIYD 531 (787)
Q Consensus 461 ~~m~~~~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~~~~~p~------~~t~~~li~~~~~~g~~~~A~~~~~ 531 (787)
+.+.+..+.+...+..+...+...|+ +++|...|++..+...-.|+ ..+|..+...|.+.|++++|.+.|+
T Consensus 166 ~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (272)
T 3u4t_A 166 VKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245 (272)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99998767778999999999999998 88899998887764211233 3688889999999999999999999
Q ss_pred HHHHcCCccCHH
Q 003913 532 LMCLKKYEIESA 543 (787)
Q Consensus 532 ~m~~~g~~~~p~ 543 (787)
+..+ ++|+
T Consensus 246 ~al~----~~p~ 253 (272)
T 3u4t_A 246 NILA----LDPT 253 (272)
T ss_dssp HHHH----HCTT
T ss_pred HHHh----cCcc
Confidence 9997 5554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-10 Score=110.93 Aligned_cols=170 Identities=15% Similarity=0.070 Sum_probs=137.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003913 366 PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTN 445 (787)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 445 (787)
+..+|..+...|.+.|++++|++.|++..+... -+..+|..+...|.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 566777888888888888888888888776632 266778888888888888888888888877754 345677777788
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHH
Q 003913 446 MYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVK 525 (787)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~ 525 (787)
.+...++++.|...+....+..+.+..++..+...|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--chhhhHHHHHHHHHHHCCCHHH
Confidence 88888888888888888887667788888899999999999999999999988875 5577888999999999999999
Q ss_pred HHHHHHHHHHcCCccCHH
Q 003913 526 AEKIYDLMCLKKYEIESA 543 (787)
Q Consensus 526 A~~~~~~m~~~g~~~~p~ 543 (787)
|++.|++.++ ++|+
T Consensus 160 A~~~~~~al~----~~p~ 173 (184)
T 3vtx_A 160 AVKYFKKALE----KEEK 173 (184)
T ss_dssp HHHHHHHHHH----TTHH
T ss_pred HHHHHHHHHh----CCcc
Confidence 9999998887 6776
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-10 Score=117.33 Aligned_cols=192 Identities=12% Similarity=0.110 Sum_probs=173.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003913 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK----IGEFMKSLEIFREMQERLGSASVPAYH 406 (787)
Q Consensus 331 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~ 406 (787)
+..++..+...|...|++++|.+.|++..+.+ +..++..+...|.. .|++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56677888889999999999999999999854 57888889999999 999999999999999875 788899
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 003913 407 KIIELLCK----AEETELTESLMKEFVETGMKPLMPSYINLTNMYLN----LGMHDRLHLAFSECLEKCRPNRTIYGIYL 478 (787)
Q Consensus 407 ~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~~~p~~~~~~~li 478 (787)
.+...|.. .+++++|...|++..+.+ +..++..+...|.. .+++++|...|++..+.. +...+..+.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 153 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG 153 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence 99999999 999999999999999875 78899999999999 999999999999998732 678888999
Q ss_pred HHHHh----cCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHcC
Q 003913 479 ESLKN----AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS----SGDFVKAEKIYDLMCLKK 537 (787)
Q Consensus 479 ~~~~~----~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g 537 (787)
..|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 216 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE 216 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC
Confidence 99998 999999999999999886 67889999999999 999999999999998754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.34 E-value=3.3e-10 Score=117.46 Aligned_cols=217 Identities=11% Similarity=0.110 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHh-CCCCCCHHHHHHHHHHHH
Q 003913 314 ERISLLKKEMQQAGFEEGKEVLLSVLRVCA-------KEGDV-------EDAEKTWLRLLE-SDNGIPTPAFVYKMEAYA 378 (787)
Q Consensus 314 ~~a~~l~~~m~~~g~~p~~~t~~~li~~~~-------~~g~~-------~~A~~~~~~m~~-~~~~~~~~~~~~li~~~~ 378 (787)
++|..+|++.... .+-+...|..+...+. +.|++ ++|..+|++..+ ..+. +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 5666677666653 1234556666666554 45886 899999999998 4432 5678999999999
Q ss_pred HcCChHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHH
Q 003913 379 KIGEFMKSLEIFREMQERLGSAS-VP-AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL-NLGMHDR 455 (787)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~g~~p~-~~-t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~-~~g~~~~ 455 (787)
+.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|..+|++.++.. +++...|........ ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999874 443 33 79999999999999999999999999854 344555655444433 3699999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003913 456 LHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGV--NTRSCNIILSAYLSSGDFVKAEKIYDLM 533 (787)
Q Consensus 456 a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p--~~~t~~~li~~~~~~g~~~~A~~~~~~m 533 (787)
|..+|+..++..+.+...|..++..+.+.|++++|..+|++......++| ....|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999886677899999999999999999999999999998632455 4778999999999999999999999999
Q ss_pred HH
Q 003913 534 CL 535 (787)
Q Consensus 534 ~~ 535 (787)
.+
T Consensus 268 ~~ 269 (308)
T 2ond_A 268 FT 269 (308)
T ss_dssp HH
T ss_pred HH
Confidence 87
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-11 Score=133.52 Aligned_cols=303 Identities=12% Similarity=0.001 Sum_probs=223.6
Q ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHH
Q 003913 299 SGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG----KEVLLSVLRVCAKEGDVEDAEKTWLRLLES----DNGI-PTPA 369 (787)
Q Consensus 299 ~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~ 369 (787)
.....+..+...|++++|...|++..+.... + ..++..+...|...|++++|...+++..+. +..| ...+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3444557788899999999999999886321 3 356888889999999999999999887553 2111 2456
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCC--------------------hHHHHHH
Q 003913 370 FVYKMEAYAKIGEFMKSLEIFREMQERLG-SAS----VPAYHKIIELLCKAEE--------------------TELTESL 424 (787)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~--------------------~~~A~~l 424 (787)
+..+...|...|++++|...|++..+... .++ ..++..+...|...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 77889999999999999999998764310 012 3478888899999999 9999999
Q ss_pred HHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 003913 425 MKEFVET----GMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPN----RTIYGIYLESLKNAGNIEKAEEI 493 (787)
Q Consensus 425 ~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~l 493 (787)
+.+..+. +-.| ...++..+...|...|++++|...+++..+ ...++ ..+|..+...|...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 9887652 2111 245788899999999999999999999876 11222 34888999999999999999999
Q ss_pred HHHhhhCCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCch
Q 003913 494 FNHMHSDQTIGVN----TRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSS 569 (787)
Q Consensus 494 ~~~m~~~~~~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~ 569 (787)
+++..+...-.++ ..++..+...|...|++++|...+++..+ +.+.. -..
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~----~~~~~----------------------~~~ 303 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA----IAQEL----------------------NDR 303 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHHT----------------------TCH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH----HHHhc----------------------CCc
Confidence 9988753200011 56888999999999999999999999876 22221 001
Q ss_pred HHHHHHHHHHhhhhhhccchhhcceeEE--EEE------ccCCcccHHHHHHHHHHchhhcCCCccc
Q 003913 570 EQRENLIGLLLGGLCIESDEKRKRHMIR--FQF------NENSRMHSVLRRYLYDQYHEWLHPSFKV 628 (787)
Q Consensus 570 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~------~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 628 (787)
.....++..+...+...|+++.|...++ +.+ .+.....+..++.+|...|+...+...+
T Consensus 304 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 370 (406)
T 3sf4_A 304 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSI 370 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHH
Confidence 1125677788888888999998888876 333 2334557788999999999876654433
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2.7e-10 Score=108.04 Aligned_cols=168 Identities=14% Similarity=0.180 Sum_probs=151.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003913 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410 (787)
Q Consensus 331 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (787)
+..+|..+...|.+.|++++|.+.|++.++..+. +..+|..+..+|.+.|++++|...+........ -+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 6778999999999999999999999999998764 788999999999999999999999999987643 36778888889
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 003913 411 LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKA 490 (787)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A 490 (787)
.+...++++.|...+.+..+.. +-+..++..+..+|.+.|++++|++.|++.++..+.+..+|..+...|.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999998854 456889999999999999999999999999987778899999999999999999999
Q ss_pred HHHHHHhhhCC
Q 003913 491 EEIFNHMHSDQ 501 (787)
Q Consensus 491 ~~l~~~m~~~~ 501 (787)
++.|++..+..
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999999864
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-10 Score=126.40 Aligned_cols=343 Identities=10% Similarity=0.008 Sum_probs=226.6
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCCh---hHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKF---AKCRDIFDDIINQGRVPSEMTFHILIVAYLSAP 229 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~ 229 (787)
...+.|++++|.++|+...+.| +...+..|..+|...|+. ++|...|++..+. +...+..|-..+.
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~--- 80 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA--- 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHHH---
T ss_pred HHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH---
Confidence 4457889999999999999887 333445566667778888 8999999998864 5556666666444
Q ss_pred cCC-----CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 003913 230 VQG-----CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWL 304 (787)
Q Consensus 230 ~~g-----~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 304 (787)
..+ ++++|+..|++..+. | .|+ .+..+-..+....+ .. .. .++.+.+......|.. .....+.
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~-g-~~~--A~~~Lg~~y~~~~~-~~-~~-~~a~~~~~~a~~~g~~---~a~~~Lg-- 148 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFAN-G-EGN--TLIPLAMLYLQYPH-SF-PN-VNAQQQISQWQAAGYP---EAGLAQV-- 148 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHT-T-CSS--CHHHHHHHHHHCGG-GC-TT-CCHHHHHHHHHHHTCT---THHHHHH--
T ss_pred hCCCCCCcCHHHHHHHHHHHHHC-C-CHH--HHHHHHHHHHhCCC-CC-CC-HHHHHHHHHHHHCCCH---HHHHHHH--
Confidence 233 789999999999885 3 233 34444444444311 00 01 3466666666666652 2222222
Q ss_pred hhhccCC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003913 305 HSYQDNI----DKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEG---DVEDAEKTWLRLLESDNGIPTPAFVYKMEAY 377 (787)
Q Consensus 305 ~~~~~~g----~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 377 (787)
..+...+ +.+.+..+++.... .+...+..|...|.+.| +.++|.+.|++..+.|.. +...+..|...|
T Consensus 149 ~~y~~~~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y 223 (452)
T 3e4b_A 149 LLYRTQGTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVL 223 (452)
T ss_dssp HHHHHHTCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHH
Confidence 2222223 34555555554433 23338888888899999 999999999999999853 555556677777
Q ss_pred HHc----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003913 378 AKI----GEFMKSLEIFREMQERLGSASVPAYHKIIEL-L--CKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL 450 (787)
Q Consensus 378 ~~~----g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 450 (787)
... +++++|++.|++.. .| +...+..|... + ...++.++|...|++..+.| +...+..|...|. .
T Consensus 224 ~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~ 295 (452)
T 3e4b_A 224 GDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-E 295 (452)
T ss_dssp TCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-H
T ss_pred hCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-c
Confidence 665 79999999999987 43 55666677666 3 46889999999999999877 6788888888887 5
Q ss_pred C-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc--
Q 003913 451 G-----MHDRLHLAFSECLEKCRPNRTIYGIYLESLKN----AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS-- 519 (787)
Q Consensus 451 g-----~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~-- 519 (787)
| ++++|...|++.. +-+...+..|...|.. ..++++|..+|++..+.| +...+..|...|..
T Consensus 296 G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~G~ 368 (452)
T 3e4b_A 296 GKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG----QNSADFAIAQLFSQGK 368 (452)
T ss_dssp CSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT----CTTHHHHHHHHHHSCT
T ss_pred CCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC----hHHHHHHHHHHHHhCC
Confidence 5 9999999999887 6678889999888877 349999999999999988 44566677777764
Q ss_pred --CCCHHHHHHHHHHHHHcCC
Q 003913 520 --SGDFVKAEKIYDLMCLKKY 538 (787)
Q Consensus 520 --~g~~~~A~~~~~~m~~~g~ 538 (787)
..+.++|..+|+...+.|.
T Consensus 369 g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 369 GTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TBCCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 5689999999999998773
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-10 Score=124.09 Aligned_cols=299 Identities=10% Similarity=-0.002 Sum_probs=209.6
Q ss_pred cCCCHHHHHHHHHHHHHhC-CC--CCCHHHHHHHHHHHHcCCCCCChhhHHHHH-----------HHHHHHHHcCCccC-
Q 003913 230 VQGCLDEACSIYNRMIQLG-GY--QPRPSLHNSLFRALVSKPGGLSKYYLQQAE-----------FIFHNLLTSGLEIQ- 294 (787)
Q Consensus 230 ~~g~~~~A~~l~~~m~~~~-g~--~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~-----------~~~~~m~~~~~~p~- 294 (787)
+.+++++|..+++++.+.. .+ .++...|-.++..-.... .+.++.+. +.++.+.......+
T Consensus 24 ~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~----~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~ 99 (383)
T 3ulq_A 24 RRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLM----LEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTG 99 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH----HHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH----HhhcCcccccccccccchhhHHHHHHhcCCCchh
Confidence 5677888888777775531 22 223333333433221100 02334444 55555543221111
Q ss_pred -HHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C--
Q 003913 295 -KDIYSGLIWLHSYQDNIDKERISLLKKEMQQAG-FEEG----KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG-I-- 365 (787)
Q Consensus 295 -~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g-~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~-- 365 (787)
...|..+..+..+...|++++|...|++..+.- -.++ ..++..+...|...|++++|...+.+..+.... +
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 112233345677888999999999999987641 1122 357888999999999999999999988764211 1
Q ss_pred ---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC
Q 003913 366 ---PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLG-SAS----VPAYHKIIELLCKAEETELTESLMKEFVET----GM 433 (787)
Q Consensus 366 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~ 433 (787)
...+++.+...|...|++++|.+.|++..+... .++ ..++..+...|...|++++|...+++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 135788889999999999999999998764311 012 247888999999999999999999998872 33
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCC
Q 003913 434 -KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK-----CRPNRTIYGIYLESLKNAGN---IEKAEEIFNHMHSDQTIG 504 (787)
Q Consensus 434 -~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~~~~~ 504 (787)
+....++..+...|.+.|++++|...+++..+. .+.....++.+...|...|+ +++|+.++++... .+
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~---~~ 336 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML---YA 336 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC---HH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC---HH
Confidence 334678999999999999999999999998761 22223446778888889999 8889999988732 23
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 505 VNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 505 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.....+..+...|...|++++|...|++..+
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456788899999999999999999999875
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-10 Score=127.59 Aligned_cols=214 Identities=13% Similarity=0.011 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 003913 313 KERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDV-EDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFR 391 (787)
Q Consensus 313 ~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 391 (787)
.++++..+++.... -..+...+..+..++...|++ ++|.+.|++..+.... +..+|..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45555666654432 223677888888899999999 9999999999887643 67889999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCHH
Q 003913 392 EMQERLGSASVPAYHKIIELLCKA---------EETELTESLMKEFVETGMKPLMPSYINLTNMYLNL--------GMHD 454 (787)
Q Consensus 392 ~m~~~g~~p~~~t~~~li~~~~~~---------g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~--------g~~~ 454 (787)
+..+. .|+...|..+...|... |++++|...+++.++.. +-+...+..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99876 47778888899999998 99999999999998864 44688899999999988 9999
Q ss_pred HHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 003913 455 RLHLAFSECLEKCR---PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYD 531 (787)
Q Consensus 455 ~a~~~~~~m~~~~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 531 (787)
+|...|++..+..+ .+...|..+...|.+.|++++|++.|++..+.. +.+...+..+...+...|++++|++.+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999988545 689999999999999999999999999998874 5567789999999999999999988765
Q ss_pred HH
Q 003913 532 LM 533 (787)
Q Consensus 532 ~m 533 (787)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 44
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.25 E-value=8.8e-11 Score=127.19 Aligned_cols=261 Identities=12% Similarity=-0.027 Sum_probs=199.9
Q ss_pred hhHHHHHHHHHHHHHcCCccCHH--HHHHHHHHhhhccCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcC
Q 003913 274 YYLQQAEFIFHNLLTSGLEIQKD--IYSGLIWLHSYQDNIDKERISLLKKEMQQA----GFEE-GKEVLLSVLRVCAKEG 346 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~g 346 (787)
|++++|...|+++++.+.. +.. ...+...+..+...|++++|...+++..+. +-.| ...++..+...|...|
T Consensus 62 g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 140 (411)
T 4a1s_A 62 GDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG 140 (411)
T ss_dssp TCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 6999999999999887543 222 123334457788899999999999887653 2122 3456788889999999
Q ss_pred ChHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHHc----CCCC
Q 003913 347 DVEDAEKTWLRLLESD-----NGIPTPAFVYKMEAYAKIGE-----------------FMKSLEIFREMQER----LGSA 400 (787)
Q Consensus 347 ~~~~A~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~----g~~p 400 (787)
++++|...+++..+.. ......++..+...|...|+ +++|.+.+++..+. +..+
T Consensus 141 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~ 220 (411)
T 4a1s_A 141 RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRG 220 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999877641 11134577888999999999 99999999886542 1111
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--C---
Q 003913 401 -SVPAYHKIIELLCKAEETELTESLMKEFVETGM-KPL----MPSYINLTNMYLNLGMHDRLHLAFSECLEKCR--P--- 469 (787)
Q Consensus 401 -~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~--p--- 469 (787)
...++..+...|...|++++|...+++..+..- .++ ..++..+...|...|++++|...|++..+..+ .
T Consensus 221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 300 (411)
T 4a1s_A 221 AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGERE 300 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHH
Confidence 234788888999999999999999999876311 112 34788999999999999999999999876211 1
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC----CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 470 -NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT----IGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 470 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~----~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
...++..+...|...|++++|.+.|++...... ......+|..+...|.+.|++++|..+|++..+
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 301 VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 256888999999999999999999998876410 011245888899999999999999999999987
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-11 Score=127.67 Aligned_cols=247 Identities=12% Similarity=0.038 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCC
Q 003913 368 PAFVYKMEAYAKIGEFMKSLEIFREMQER-------LGSASVPAYHKIIELLCKAEETELTESLMKEFVET------GMK 434 (787)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~ 434 (787)
.++..+...|...|++++|..+|+++.+. .......++..+...|...|++++|...+++..+. +-.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34444555555555555555555554431 11112334555555555556666666555555542 111
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-----
Q 003913 435 P-LMPSYINLTNMYLNLGMHDRLHLAFSECLEKC--------RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD----- 500 (787)
Q Consensus 435 p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~--------~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----- 500 (787)
| ...++..+...|...|++++|...|+++.+.. +....++..+...|...|++++|+++|+++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 2 24556666677777777777777777665421 223456788888888889999999888888764
Q ss_pred -CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHH
Q 003913 501 -QTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLL 579 (787)
Q Consensus 501 -~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~l 579 (787)
+.-+....++..+...|...|++++|..+|+++.+ ..+... +..... ...........+..+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~~~~~--~~~~~~-----------~~~~~~~~~~~~~~~ 250 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT----RAHERE--FGSVDD-----------ENKPIWMHAEEREEC 250 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HHHHHH--HC-----------------CCHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHhc--CCCCCc-----------chHHHHHHHHHHHHh
Confidence 10122356788889999999999999999999886 222210 000000 000000113344444
Q ss_pred hhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccccCC
Q 003913 580 LGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDG 631 (787)
Q Consensus 580 l~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~ 631 (787)
...+...+.+..+...++ ....|.....+..++.+|...|++++|...+.++
T Consensus 251 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 251 KGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp -------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 555555566666666666 4556777888899999999999999987766543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.9e-10 Score=125.46 Aligned_cols=187 Identities=10% Similarity=0.015 Sum_probs=165.3
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003913 347 DVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEF-MKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLM 425 (787)
Q Consensus 347 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~ 425 (787)
.++++.+.+++...... .+...+..+...|...|++ ++|++.|++..+... -+...|..+...|...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35677777777665543 4788899999999999999 999999999988632 35889999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc--------CCHH
Q 003913 426 KEFVETGMKPLMPSYINLTNMYLNL---------GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA--------GNIE 488 (787)
Q Consensus 426 ~~m~~~g~~p~~~t~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~--------g~~~ 488 (787)
++.++. .|+..++..+..+|... |++++|...|++.++..+.+...|..+..+|... |+++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 999974 57889999999999999 9999999999999987778899999999999999 9999
Q ss_pred HHHHHHHHhhhCCCCC---CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHH
Q 003913 489 KAEEIFNHMHSDQTIG---VNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESA 543 (787)
Q Consensus 489 ~A~~l~~~m~~~~~~~---p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~ 543 (787)
+|++.|++..+.. + -+...|..+..+|...|++++|++.|++..+ .+|+
T Consensus 239 ~A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----l~p~ 290 (474)
T 4abn_A 239 QALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA----LDPA 290 (474)
T ss_dssp HHHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTT
T ss_pred HHHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCC
Confidence 9999999999864 3 4889999999999999999999999999987 5555
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.9e-11 Score=127.53 Aligned_cols=271 Identities=14% Similarity=-0.012 Sum_probs=203.5
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCCHHHH
Q 003913 300 GLIWLHSYQDNIDKERISLLKKEMQQAGFEEGK----EVLLSVLRVCAKEGDVEDAEKTWLRLLES----DN-GIPTPAF 370 (787)
Q Consensus 300 ~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~~~~~ 370 (787)
.+..+..+...|++++|...|++..+.... +. .++..+...|...|++++|...+++..+. +. .....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 334457788899999999999999886322 22 46888899999999999999999987764 11 1234677
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCC-----------------hHHHHHHHHHH
Q 003913 371 VYKMEAYAKIGEFMKSLEIFREMQER----LGSA-SVPAYHKIIELLCKAEE-----------------TELTESLMKEF 428 (787)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~-----------------~~~A~~l~~~m 428 (787)
..+...|...|++++|...|++..+. +-.| ...++..+...|...|+ +++|...+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 88999999999999999999987643 1111 24478888999999999 99999999887
Q ss_pred HHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 003913 429 VET----GMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEKC--RPN----RTIYGIYLESLKNAGNIEKAEEIFNHM 497 (787)
Q Consensus 429 ~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~--~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m 497 (787)
.+. +-.+ ...++..+...|...|++++|...+++..+.. .++ ..++..+...|...|++++|...|++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 652 2111 24578889999999999999999999987621 122 237889999999999999999999988
Q ss_pred hhCCC----CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHH
Q 003913 498 HSDQT----IGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRE 573 (787)
Q Consensus 498 ~~~~~----~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~ 573 (787)
.+... ......++..+...|...|++++|..++++..+ ..+.. -......
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~~~~----------------------~~~~~~~ 343 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA----IAQEL----------------------GDRIGEA 343 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHHH----------------------TCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHC----------------------CChHHHH
Confidence 76420 001257888999999999999999999999886 33221 0001124
Q ss_pred HHHHHHhhhhhhccchhhcceeEE
Q 003913 574 NLIGLLLGGLCIESDEKRKRHMIR 597 (787)
Q Consensus 574 ~~~~~ll~~~~~~~~~~~a~~~~~ 597 (787)
.++..+...+...|+.+.|...++
T Consensus 344 ~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 344 RACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHH
Confidence 567777778888888887776654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.2e-10 Score=121.26 Aligned_cols=277 Identities=13% Similarity=-0.008 Sum_probs=206.6
Q ss_pred CCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHH--HHHHHHHHhhhccCCCHHHHHHHHHHHHHc---
Q 003913 252 PRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKD--IYSGLIWLHSYQDNIDKERISLLKKEMQQA--- 326 (787)
Q Consensus 252 pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~~g~~~~a~~l~~~m~~~--- 326 (787)
+....+...-..+... |++++|...|+++++.+.. +.. .......+..+...|++++|...+++....
T Consensus 7 ~~~~~l~~~g~~~~~~------g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 79 (406)
T 3sf4_A 7 ASCLELALEGERLCKS------GDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART 79 (406)
T ss_dssp CCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 3344444444445554 6999999999999887543 222 223334447888899999999999886543
Q ss_pred -CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCC-----------------
Q 003913 327 -GFEEG-KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG-IP----TPAFVYKMEAYAKIGE----------------- 382 (787)
Q Consensus 327 -g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~----------------- 382 (787)
+-.|. ..++..+...|...|++++|...+++..+.... .+ ..++..+...|...|+
T Consensus 80 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a 159 (406)
T 3sf4_A 80 IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV 159 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHH
T ss_pred ccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhH
Confidence 22222 446788889999999999999999987764211 12 3478888999999999
Q ss_pred ---hHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHh
Q 003913 383 ---FMKSLEIFREMQER----LGSA-SVPAYHKIIELLCKAEETELTESLMKEFVETG-MKPL----MPSYINLTNMYLN 449 (787)
Q Consensus 383 ---~~~A~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~----~~t~~~li~~~~~ 449 (787)
+++|.+.+++.... +..| ...++..+...|...|++++|...+++..+.. -.++ ..++..+...|..
T Consensus 160 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 239 (406)
T 3sf4_A 160 RDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 239 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 99999999886532 1111 13468888999999999999999999987631 0122 3488899999999
Q ss_pred cCCHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC----HHHHHHHHHHHHc
Q 003913 450 LGMHDRLHLAFSECLEKC--RPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN----TRSCNIILSAYLS 519 (787)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~--~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~----~~t~~~li~~~~~ 519 (787)
.|++++|...+++..+.. .++ ..++..+...|...|++++|...|++..+...-.++ ..++..+...|..
T Consensus 240 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 319 (406)
T 3sf4_A 240 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTA 319 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 999999999999987621 122 568889999999999999999999988764200112 5688899999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 003913 520 SGDFVKAEKIYDLMCL 535 (787)
Q Consensus 520 ~g~~~~A~~~~~~m~~ 535 (787)
.|++++|...|++..+
T Consensus 320 ~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 320 LGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999999875
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-10 Score=119.82 Aligned_cols=272 Identities=13% Similarity=-0.001 Sum_probs=198.9
Q ss_pred HHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CC
Q 003913 297 IYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG-----KEVLLSVLRVCAKEGDVEDAEKTWLRLLES----DNG-IP 366 (787)
Q Consensus 297 ~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~-----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~ 366 (787)
....+..+..+...|++++|...|++..+.. |+ ...+..+...+...|++++|.+.+++..+. +.. ..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 3444555677888999999999999998863 33 357788889999999999999999887653 111 12
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCC--------------------hHHH
Q 003913 367 TPAFVYKMEAYAKIGEFMKSLEIFREMQERLG-SAS----VPAYHKIIELLCKAEE--------------------TELT 421 (787)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~--------------------~~~A 421 (787)
..++..+...|...|++++|...|++..+... .++ ..++..+...+...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 45677889999999999999999998754311 112 3378888899999999 9999
Q ss_pred HHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCC----HHHHHHHHHHHHhcCCHHHH
Q 003913 422 ESLMKEFVET----GMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEK--CRPN----RTIYGIYLESLKNAGNIEKA 490 (787)
Q Consensus 422 ~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--~~p~----~~~~~~li~~~~~~g~~~~A 490 (787)
...+++..+. +-.+ ...++..+...|...|++++|...+++..+. ..++ ..++..+...|...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9998887642 2111 2457888899999999999999999998751 1122 33788899999999999999
Q ss_pred HHHHHHhhhCCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccC
Q 003913 491 EEIFNHMHSDQTIGVN----TRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLN 566 (787)
Q Consensus 491 ~~l~~~m~~~~~~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~ 566 (787)
.+.+++......-.++ ..++..+...|...|++++|...+++..+ ..+..
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~----~~~~~---------------------- 296 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA----IAQEL---------------------- 296 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHHH----------------------
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----HHHhc----------------------
Confidence 9999988753100011 56888899999999999999999999876 22221
Q ss_pred CchHHHHHHHHHHhhhhhhccchhhcceeE
Q 003913 567 LSSEQRENLIGLLLGGLCIESDEKRKRHMI 596 (787)
Q Consensus 567 l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 596 (787)
-.......++..+...+...|+.+.|...+
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 000112446666777777777777766544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-09 Score=112.79 Aligned_cols=226 Identities=9% Similarity=0.021 Sum_probs=180.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003913 349 EDAEKTWLRLLESDNGIPTPAFVYKMEAYAK-------IGEF-------MKSLEIFREMQERLGSASVPAYHKIIELLCK 414 (787)
Q Consensus 349 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 414 (787)
++|..+|++.++..+. +...|..++..+.. .|++ ++|..+|++..+.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 6888899999887543 77888888887764 5886 9999999999873122356689999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 003913 415 AEETELTESLMKEFVETGMKPL-MP-SYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLK-NAGNIEKAE 491 (787)
Q Consensus 415 ~g~~~~A~~l~~~m~~~g~~p~-~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~-~~g~~~~A~ 491 (787)
.|++++|..+|+++++ +.|+ .. +|..++..+.+.|++++|..+|++.++..+.+...|........ ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998 4554 33 89999999999999999999999999865666677765554433 369999999
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHH
Q 003913 492 EIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQ 571 (787)
Q Consensus 492 ~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~ 571 (787)
++|++..+.. +-+...|..++..+.+.|++++|..+|++.++.. ..+|+.
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-~l~p~~--------------------------- 239 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-SLPPEK--------------------------- 239 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-SSCGGG---------------------------
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc-CCCHHH---------------------------
Confidence 9999998873 5578999999999999999999999999999742 123320
Q ss_pred HHHHHHHHhhhhhhccchhhcceeEE--EEEccCCccc
Q 003913 572 RENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMH 607 (787)
Q Consensus 572 ~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~ 607 (787)
...+|..++......|+.+.+..+++ ++..|++...
T Consensus 240 ~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 240 SGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccccc
Confidence 15678888888888898888887776 6667765543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.2e-10 Score=118.42 Aligned_cols=238 Identities=14% Similarity=0.106 Sum_probs=160.7
Q ss_pred HHHHHHHHHhhhccCCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------C
Q 003913 296 DIYSGLIWLHSYQDNIDKERISLLKKEMQQA-------GFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES------D 362 (787)
Q Consensus 296 ~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~-------g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~------~ 362 (787)
........+..+...|++++|..+++++.+. .......++..+...|...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3334444457788888899999998888763 12223456778888888899999999988888764 2
Q ss_pred C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---
Q 003913 363 N-GIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER------LGSA-SVPAYHKIIELLCKAEETELTESLMKEFVET--- 431 (787)
Q Consensus 363 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--- 431 (787)
- .....++..+...|...|++++|...|++..+. +..| ...++..+...+...|++++|..+++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 123456777888888899999999999887754 2222 3456778888888889999999988888764
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCC-------CHHHHHHHHHHHHhcCCHHHHHH
Q 003913 432 ---GMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEK--------CRP-------NRTIYGIYLESLKNAGNIEKAEE 492 (787)
Q Consensus 432 ---g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--------~~p-------~~~~~~~li~~~~~~g~~~~A~~ 492 (787)
+-.| ...++..+..+|...|++++|...++++.+. ..+ ....+..+...+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2123 2457788888888899999999988888751 111 12233333444455566666667
Q ss_pred HHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 493 IFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 493 l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.++...... +.+..+|..+...|.+.|++++|.++|++.++
T Consensus 266 ~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDS--PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------C--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCC--chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777766653 45678899999999999999999999999875
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.21 E-value=3e-10 Score=118.53 Aligned_cols=261 Identities=13% Similarity=0.003 Sum_probs=197.9
Q ss_pred hhHHHHHHHHHHHHHcCCccCHH--HHHHHHHHhhhccCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcC
Q 003913 274 YYLQQAEFIFHNLLTSGLEIQKD--IYSGLIWLHSYQDNIDKERISLLKKEMQQA----GFEE-GKEVLLSVLRVCAKEG 346 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~g 346 (787)
|++++|...|+++.+.... +.. .......+..+...|++++|...+++.... +-.| ...++..+...+...|
T Consensus 19 g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 97 (338)
T 3ro2_A 19 GDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 97 (338)
T ss_dssp TCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc
Confidence 6999999999999887543 221 222333447788899999999999876542 2222 2456788889999999
Q ss_pred ChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHHc----C
Q 003913 347 DVEDAEKTWLRLLESDNG-IP----TPAFVYKMEAYAKIGE--------------------FMKSLEIFREMQER----L 397 (787)
Q Consensus 347 ~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~~----g 397 (787)
++++|...+++..+.... ++ ..++..+...|...|+ +++|.+.+++.... +
T Consensus 98 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~ 177 (338)
T 3ro2_A 98 NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG 177 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999987664211 12 3477888999999999 99999999886532 1
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC
Q 003913 398 GSA-SVPAYHKIIELLCKAEETELTESLMKEFVETGM-KPL----MPSYINLTNMYLNLGMHDRLHLAFSECLEKC--RP 469 (787)
Q Consensus 398 ~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~--~p 469 (787)
..+ ...++..+...+...|++++|...+++..+..- .++ ..++..+...|...|++++|...+++..+.. ..
T Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (338)
T 3ro2_A 178 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence 111 234688888999999999999999999875210 112 3478899999999999999999999987621 12
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC----CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 470 N----RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ----TIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 470 ~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~----~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+ ..++..+...|...|++++|...+++..+.. .......++..+...|.+.|++++|...+++..+
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 258 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 2 5678889999999999999999999886531 0111145888899999999999999999999986
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-09 Score=103.21 Aligned_cols=164 Identities=13% Similarity=0.045 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003913 368 PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMY 447 (787)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 447 (787)
..|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345556666667777777777776665432 2355666667777777777777777777776643 34566777777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 003913 448 LNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAE 527 (787)
Q Consensus 448 ~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~ 527 (787)
...|++++|...++.+.+..+.+...+..+...|...|++++|.+.++++.+.. +.+..+|..+...|...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHHH
Confidence 778888888888877777556677888888888888888888888888887764 456778888888888888888888
Q ss_pred HHHHHHHH
Q 003913 528 KIYDLMCL 535 (787)
Q Consensus 528 ~~~~~m~~ 535 (787)
..+++..+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888775
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.18 E-value=2.2e-07 Score=105.49 Aligned_cols=374 Identities=7% Similarity=0.029 Sum_probs=230.1
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCC---hhHHHHHHHHHHHCC-CCCCHhHHHHHHHHHhcC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERK---FAKCRDIFDDIINQG-RVPSEMTFHILIVAYLSA 228 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~f~~m~~~g-~~pd~~ty~~li~~~~~~ 228 (787)
.+.+.+.++.+..+|+.+... ++.....|...+..-.+.|. ++.+..+|++..... ..|++..|..-+.-..
T Consensus 75 ~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~-- 150 (679)
T 4e6h_A 75 HHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVR-- 150 (679)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHH--
T ss_pred HHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--
Confidence 344567889999999999987 57788889998998888888 999999999988763 2378888887766544
Q ss_pred CcCCC--------HHHHHHHHHHHHHhCCC-CCCH-HHHHHHHHHHHcCCCCC---ChhhHHHHHHHHHHHHHcCCccCH
Q 003913 229 PVQGC--------LDEACSIYNRMIQLGGY-QPRP-SLHNSLFRALVSKPGGL---SKYYLQQAEFIFHNLLTSGLEIQK 295 (787)
Q Consensus 229 ~~~g~--------~~~A~~l~~~m~~~~g~-~pd~-~t~~~ll~~~~~~~~~~---~~g~~~~A~~~~~~m~~~~~~p~~ 295 (787)
+.+. .+.+.++|+.....-|. .|+. ..|...+.-.....+.. .+++++.+..+|+.++........
T Consensus 151 -~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~ 229 (679)
T 4e6h_A 151 -KKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLE 229 (679)
T ss_dssp -HHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHH
T ss_pred -HhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHH
Confidence 2222 23455788877665466 6653 56666665433211000 113567778888877743221111
Q ss_pred HHHHHHHHH-hhhcc----------CCCH---------------------------------------------------
Q 003913 296 DIYSGLIWL-HSYQD----------NIDK--------------------------------------------------- 313 (787)
Q Consensus 296 ~~~~~li~~-~~~~~----------~g~~--------------------------------------------------- 313 (787)
.++...... ..... ..++
T Consensus 230 ~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi 309 (679)
T 4e6h_A 230 SMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWI 309 (679)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHH
Confidence 121111000 00000 0001
Q ss_pred ----------------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHhCCCCCCHHHHHHHHHH
Q 003913 314 ----------------ERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAE-KTWLRLLESDNGIPTPAFVYKMEA 376 (787)
Q Consensus 314 ----------------~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~li~~ 376 (787)
.++..+|++.... +.-+...|...+..+...|+.++|. ++|++.....+ .+...|-..+..
T Consensus 310 ~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ 387 (679)
T 4e6h_A 310 RWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQ 387 (679)
T ss_dssp HHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 1122233333332 1223334444444455667777775 88887776432 355566677777
Q ss_pred HHHcCChHHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCC
Q 003913 377 YAKIGEFMKSLEIFREMQERL---------GSAS------------VPAYHKIIELLCKAEETELTESLMKEFVET-GMK 434 (787)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g---------~~p~------------~~t~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~ 434 (787)
.-+.|++++|.++|+++.+.. ..|+ ...|...+....+.|..+.|..+|.+.++. + .
T Consensus 388 ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~ 466 (679)
T 4e6h_A 388 YELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-L 466 (679)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-G
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-C
Confidence 778888888888888776531 0131 235777777777778888888888888765 2 1
Q ss_pred CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---CHHHH
Q 003913 435 PLMPSYINLTNMYLNLG-MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGV---NTRSC 510 (787)
Q Consensus 435 p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p---~~~t~ 510 (787)
.....|...+..-.+.+ +.+.|..+|+..++.++.+...|...++.....|+.+.|..+|++..... ++ ....|
T Consensus 467 ~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~--~~~~~~~~lw 544 (679)
T 4e6h_A 467 VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI--SDSHLLKMIF 544 (679)
T ss_dssp SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS--SSTTHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc--CCHHHHHHHH
Confidence 12333433333333433 47888888888877666677777788887777888888888888887763 21 34677
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHc
Q 003913 511 NIILSAYLSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (787)
...+.--.+.|+.+.+.++.++|.+.
T Consensus 545 ~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 545 QKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777888888888888888763
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.9e-10 Score=120.92 Aligned_cols=293 Identities=11% Similarity=0.078 Sum_probs=201.7
Q ss_pred hhhccCCCHHHHHHHHHHHHHc--CCCCCH--HHHHHHHHHHH--hcCChHHHH-----------HHHHHHHhCCCCCCH
Q 003913 305 HSYQDNIDKERISLLKKEMQQA--GFEEGK--EVLLSVLRVCA--KEGDVEDAE-----------KTWLRLLESDNGIPT 367 (787)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~--g~~p~~--~t~~~li~~~~--~~g~~~~A~-----------~~~~~m~~~~~~~~~ 367 (787)
+.+.+.+++++|..+++++.+. .++.|. ..|-.++..-. ..+.++.+. +.++.+..... +.
T Consensus 20 ~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~--~~ 97 (383)
T 3ulq_A 20 YMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQA--RL 97 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTH--HH
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCC--Cc
Confidence 4456678899999999888664 233343 34444443322 234444444 66666544221 11
Q ss_pred HH------HHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC
Q 003913 368 PA------FVYKMEAYAKIGEFMKSLEIFREMQERL-GSAS----VPAYHKIIELLCKAEETELTESLMKEFVET--GMK 434 (787)
Q Consensus 368 ~~------~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~ 434 (787)
.. +......+...|++++|...|++..+.- -.+| ..+|..+...|...|++++|...+.+..+. ...
T Consensus 98 ~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 177 (383)
T 3ulq_A 98 TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE 177 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS
T ss_pred hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc
Confidence 11 2225667888999999999999987531 0122 357888999999999999999999998762 111
Q ss_pred ---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----
Q 003913 435 ---P-LMPSYINLTNMYLNLGMHDRLHLAFSECLEK--CRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHS----- 499 (787)
Q Consensus 435 ---p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~----- 499 (787)
+ ...+++.+...|...|++++|...|.+.++. ..++ ..++..+...|...|++++|++.|++..+
T Consensus 178 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 178 AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 1 2467889999999999999999999998761 1122 24788999999999999999999999887
Q ss_pred CCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCc-cCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHH
Q 003913 500 DQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYE-IESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGL 578 (787)
Q Consensus 500 ~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 578 (787)
.. .+....++..+...|.+.|++++|...+++..+..-. .+|.. ...+..
T Consensus 258 ~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----------------------------~~~~~~ 308 (383)
T 3ulq_A 258 NI-LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY----------------------------LSEFEF 308 (383)
T ss_dssp TC-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH----------------------------HHHHHH
T ss_pred cc-chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH----------------------------HHHHHH
Confidence 32 1335678999999999999999999999998862100 02221 222445
Q ss_pred Hhhhhhhccc---hhhcceeEE-EEEccCCcccHHHHHHHHHHchhhcCCCccc
Q 003913 579 LLGGLCIESD---EKRKRHMIR-FQFNENSRMHSVLRRYLYDQYHEWLHPSFKV 628 (787)
Q Consensus 579 ll~~~~~~~~---~~~a~~~~~-~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 628 (787)
|...+...|+ ++.|...++ ....|.....+..|+.+|...|++++|...+
T Consensus 309 l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~ 362 (383)
T 3ulq_A 309 LKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYF 362 (383)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5556666665 455554444 3334445557788999999999999987666
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.16 E-value=3.7e-09 Score=99.59 Aligned_cols=165 Identities=16% Similarity=0.066 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003913 333 EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELL 412 (787)
Q Consensus 333 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 412 (787)
..+..+...+...|++++|...++++.+.... +..++..+...|...|++++|...++++.+.. +.+...|..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45667778888999999999999988876543 67888889999999999999999999988763 34678888899999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003913 413 CKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEE 492 (787)
Q Consensus 413 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 492 (787)
...|++++|...++++.+.. +.+..++..+..+|...|++++|...++.+.+..+.+..++..+...|...|++++|.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999998864 45788899999999999999999999999988667788999999999999999999999
Q ss_pred HHHHhhhC
Q 003913 493 IFNHMHSD 500 (787)
Q Consensus 493 l~~~m~~~ 500 (787)
.++++.+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99998764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.14 E-value=9.3e-09 Score=112.62 Aligned_cols=318 Identities=15% Similarity=0.120 Sum_probs=208.4
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCH---HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003913 186 LADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCL---DEACSIYNRMIQLGGYQPRPSLHNSLFR 262 (787)
Q Consensus 186 li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~---~~A~~l~~~m~~~~g~~pd~~t~~~ll~ 262 (787)
+...+.+.|++++|.++|++..+.| +...+..|-..|. ..|+. ++|+..|++..+ . .| ..+..+-.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~---~~g~~~d~~~A~~~~~~A~~--~-~~--~A~~~Lg~ 77 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQV---GTRDPAQIKQAEATYRAAAD--T-SP--RAQARLGR 77 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC------------------------------------CHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH---ccCCCCCHHHHHHHHHHHHh--C-CH--HHHHHHHH
Confidence 5566778999999999999998876 4445555666666 56777 999999999875 2 33 33344433
Q ss_pred HHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccC-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 263 ALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDN-IDKERISLLKKEMQQAGFEEGKEVLLSVLRV 341 (787)
Q Consensus 263 ~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~ 341 (787)
.+... +....++.++|...|++..+.|... .+..+..++..... ..-.++.+.+......|. ......+...
T Consensus 78 ~~~~~-~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~ 150 (452)
T 3e4b_A 78 LLAAK-PGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLL 150 (452)
T ss_dssp HHHTC---CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHH
T ss_pred HHHhC-CCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHH
Confidence 34332 2222358999999999999988643 22222211111111 111445666666665554 4456667777
Q ss_pred HHhcCChHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003913 342 CAKEGDVED----AEKTWLRLLESDNGIPTPAFVYKMEAYAKIG---EFMKSLEIFREMQERLGSASVPAYHKIIELLCK 414 (787)
Q Consensus 342 ~~~~g~~~~----A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 414 (787)
|...+.+++ +..+++..... +...+..|...|.+.| +.++|++.|++..+.|.. +...+..|...|..
T Consensus 151 y~~~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~ 225 (452)
T 3e4b_A 151 YRTQGTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGD 225 (452)
T ss_dssp HHHHTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTC
T ss_pred HHcCCCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhC
Confidence 777775544 44444444333 3348888999999999 999999999999988643 55555667777755
Q ss_pred c----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC--
Q 003913 415 A----EETELTESLMKEFVETGMKPLMPSYINLTNM-Y--LNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG-- 485 (787)
Q Consensus 415 ~----g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g-- 485 (787)
. ++.++|...|++.. .| +...+..|... | ...+++++|...|++..+. -+...+..|...|. .|
T Consensus 226 g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 226 ATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp GGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSS
T ss_pred CCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCC
Confidence 5 69999999999987 44 45677777777 4 4689999999999998872 27888889988888 56
Q ss_pred ---CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHcCC
Q 003913 486 ---NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS----SGDFVKAEKIYDLMCLKKY 538 (787)
Q Consensus 486 ---~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~ 538 (787)
++++|.++|++.. .| +...+..|...|.. ..++++|..+|++..+.|.
T Consensus 299 ~~~d~~~A~~~~~~Aa-~g----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV-GR----EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp SCCCHHHHHHHHHTTT-TT----CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHh-CC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 9999999999999 66 77888888888876 4499999999999998764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.12 E-value=5.6e-09 Score=111.65 Aligned_cols=233 Identities=10% Similarity=0.034 Sum_probs=179.8
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-----CHH
Q 003913 300 GLIWLHSYQDNIDKERISLLKKEMQQAGF-EEG----KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG-I-----PTP 368 (787)
Q Consensus 300 ~li~~~~~~~~g~~~~a~~l~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~-----~~~ 368 (787)
.+..+..+...|++++|...|++..+.-- .++ ..++..+..+|...|+++.|...+.+..+.... + ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 34445667889999999999999876421 123 446788899999999999999999887753111 1 245
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCHHH
Q 003913 369 AFVYKMEAYAKIGEFMKSLEIFREMQER----LGSA-SVPAYHKIIELLCKAEETELTESLMKEFVET----GMKPLMPS 439 (787)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t 439 (787)
+++.+...|...|++++|.+.|++..+. +..+ ...+++.+...|...|++++|...+++..+. +.+....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 7788999999999999999999987652 1111 1346888899999999999999999998871 22333778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCCCHHHHH
Q 003913 440 YINLTNMYLNLGMHDRLHLAFSECLEK-----CRPNRTIYGIYLESLKNAGN---IEKAEEIFNHMHSDQTIGVNTRSCN 511 (787)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~~~~~p~~~t~~ 511 (787)
+..+...|.+.|++++|...+++..+. .+.....++.+...|...|+ +++|+..+++... .+.....+.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~---~~~~~~~~~ 340 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL---HAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC---hhHHHHHHH
Confidence 999999999999999999999998862 22234566777777888888 8889888887432 223445777
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 512 IILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.+...|...|++++|...|++..+
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999999999999999999885
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.6e-09 Score=122.80 Aligned_cols=165 Identities=10% Similarity=0.072 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 367 TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM 446 (787)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 446 (787)
..+|+.|...|.+.|++++|++.|++..+... -+..+|+.+..+|.+.|++++|...|++.++.. +-+..+|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34555566666666666666666666555421 134556666666666666666666666665532 2235566666666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 003913 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKA 526 (787)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A 526 (787)
|.+.|++++|++.|++.++..+-+..+|+.|...|.+.|++++|++.|++..+.. +-+...|..+...|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHhhhhhHHHhcccHHHH
Confidence 6666666666666666665445566666666666666677777777776666653 33456666666666667776666
Q ss_pred HHHHHHHHH
Q 003913 527 EKIYDLMCL 535 (787)
Q Consensus 527 ~~~~~~m~~ 535 (787)
.+.+++.++
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.9e-07 Score=105.92 Aligned_cols=436 Identities=9% Similarity=0.035 Sum_probs=260.3
Q ss_pred ChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCC---HH
Q 003913 159 ENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGC---LD 235 (787)
Q Consensus 159 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~---~~ 235 (787)
...+-...|+..+..+ +.|...|..++..+.+.+.++.|..+|+.+... .+.....|..-+..-. +.+. ++
T Consensus 47 ~~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~---~~~~~~~~~ 120 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEF---DKMEELDAA 120 (679)
T ss_dssp CCSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH---TC--CCCHH
T ss_pred CCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH---hhCCcchHH
Confidence 3444555667777665 669999999999999999999999999999986 2335667888888877 6788 99
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCC--hhhHHHHHHHHHHHHH-cCC-ccC-HHHHHHHHHHhh-h--
Q 003913 236 EACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLS--KYYLQQAEFIFHNLLT-SGL-EIQ-KDIYSGLIWLHS-Y-- 307 (787)
Q Consensus 236 ~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~--~g~~~~A~~~~~~m~~-~~~-~p~-~~~~~~li~~~~-~-- 307 (787)
.+.++|++........|++..|..-+.-..+..+... .+..+...++|+..+. .|. .++ ...+...+.... +
T Consensus 121 ~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~ 200 (679)
T 4e6h_A 121 VIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKP 200 (679)
T ss_dssp HHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccc
Confidence 9999999998741113888888777665433211000 1223556678887654 465 453 344444442111 1
Q ss_pred ----ccCCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHH----------hcCChHHHHHHHHHHHhC--CCC----
Q 003913 308 ----QDNIDKERISLLKKEMQQAGFEEGKEVLL---SVLRVCA----------KEGDVEDAEKTWLRLLES--DNG---- 364 (787)
Q Consensus 308 ----~~~g~~~~a~~l~~~m~~~g~~p~~~t~~---~li~~~~----------~~g~~~~A~~~~~~m~~~--~~~---- 364 (787)
...++.+.+..+|++........-..+|. .....+. ....++.|...+.++... ++.
T Consensus 201 ~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 201 VNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred cCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccc
Confidence 12234677888998887521111123332 2211110 011233344444443221 110
Q ss_pred -----------C--C------HHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 003913 365 -----------I--P------TPAFVYKMEAYAKIG-------EFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEET 418 (787)
Q Consensus 365 -----------~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 418 (787)
| + ...|...+.---..+ ..+.+..+|++.... ++-+...|-..+.-+...|+.
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~ 359 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTD 359 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCC
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcH
Confidence 1 0 134444444322222 123456778888765 333677788778878888888
Q ss_pred HHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----------CC------------CHHHHH
Q 003913 419 ELTE-SLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKC----------RP------------NRTIYG 475 (787)
Q Consensus 419 ~~A~-~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~----------~p------------~~~~~~ 475 (787)
++|. .+|++.... ++.+...+...+....+.|+++.|..+|+.+++.. .| ...+|.
T Consensus 360 ~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 360 STVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp TTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 8886 888888763 34566667778888888888989988888887521 13 234688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHh
Q 003913 476 IYLESLKNAGNIEKAEEIFNHMHSD-QTIGVNTRSCNIILSAYLSS-GDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLS 553 (787)
Q Consensus 476 ~li~~~~~~g~~~~A~~l~~~m~~~-~~~~p~~~t~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~ 553 (787)
..+....+.|..+.|..+|.+..+. + .+....|...+..-.+. ++.+.|.++|+..++. ++-++..+..+.....
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~--~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKK--LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGG--GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence 8888888888889999999888776 3 12233443333333343 4588899998888874 4445555433333221
Q ss_pred h------cccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCc
Q 003913 554 L------NRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSR 605 (787)
Q Consensus 554 l------~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~ 605 (787)
. .|..++..+....+++....+|...+..-..+|+.+.+..+.+ .+..|++.
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 1 1112221111111122245778888877777887777766665 55566554
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.10 E-value=6.4e-09 Score=102.28 Aligned_cols=195 Identities=9% Similarity=-0.007 Sum_probs=145.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003913 330 EGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKII 409 (787)
Q Consensus 330 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 409 (787)
.|...+......+...|++++|...|++..+....++...+..+..+|.+.|++++|++.|++..+.... +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567778888888889999999999998888775457777777888888899999999999888875322 556788888
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHH
Q 003913 410 ELLCKAEETELTESLMKEFVETGMKPLM-------PSYINLTNMYLNLGMHDRLHLAFSECLEKCRP--NRTIYGIYLES 480 (787)
Q Consensus 410 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p--~~~~~~~li~~ 480 (787)
..|...|++++|...+++..+.. +.+. .+|..+...+...|++++|...|++.++..+. +..+|..+...
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 88889999999999998888743 2234 45777888888888889999888888875444 46777777777
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 481 LKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 481 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
|...| ..+++++...+ ..+...|.... ....+.+++|+..|++..+
T Consensus 163 ~~~~~-----~~~~~~a~~~~--~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLA--SSNKEKYASEK--AKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHH-----HHHHHHHGGGT--TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHhcc--cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 76544 44556666553 34455555444 3345668999999999987
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.1e-09 Score=105.83 Aligned_cols=208 Identities=11% Similarity=0.075 Sum_probs=147.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003913 366 PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTN 445 (787)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 445 (787)
|...+..+...|.+.|++++|...|++..+....++...+..+..++...|++++|...+++..+.. +-+..++..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 5677888888888999999999999988877544677777778888888999999999998888743 234677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--CHHHHHHHHHH
Q 003913 446 MYLNLGMHDRLHLAFSECLEKCRPNR-------TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGV--NTRSCNIILSA 516 (787)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p--~~~t~~~li~~ 516 (787)
+|...|++++|...|++..+..+.+. .+|..+...+.+.|++++|++.|++..+.. +. +...|..+...
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHHHH
Confidence 88889999999999988887556666 557788888888888999999998888864 23 35677777777
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeE
Q 003913 517 YLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMI 596 (787)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 596 (787)
|...| ..+++++...+- ..+.. +..+. ....+.++.|...+
T Consensus 163 ~~~~~-----~~~~~~a~~~~~-~~~~~-------------------------------~~~~~--~~~~~~~~~A~~~~ 203 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLAS-SNKEK-------------------------------YASEK--AKADAAFKKAVDYL 203 (228)
T ss_dssp HHHHH-----HHHHHHHGGGTT-TCHHH-------------------------------HHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHhccc-CCHHH-------------------------------HHHHH--HHHHHHHHHHHHHH
Confidence 75443 344555554221 11111 11111 12234456666666
Q ss_pred E--EEEccCCcccHHHHHHHH
Q 003913 597 R--FQFNENSRMHSVLRRYLY 615 (787)
Q Consensus 597 ~--~~~~p~~~~~~~~l~~~y 615 (787)
+ ++++|++......++.+.
T Consensus 204 ~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 204 GEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHhhcCCCCHHHHHHHHHHH
Confidence 6 677888887777766554
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=6.7e-09 Score=119.35 Aligned_cols=168 Identities=13% Similarity=0.114 Sum_probs=148.3
Q ss_pred CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003913 329 EEG-KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHK 407 (787)
Q Consensus 329 ~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 407 (787)
.|+ ...|+.|..+|.+.|++++|.+.|++.++..+. +..+|+.+..+|.+.|++++|++.|++..+... -+..+|+.
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~n 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSN 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 343 567899999999999999999999999988754 678999999999999999999999999987632 25789999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 003913 408 IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI 487 (787)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~ 487 (787)
+..+|...|++++|.+.|++.++.. +-+..+|+.+..+|.+.|++++|+..|++.++..+-+...|..|...|...|++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 9999999999999999999999853 335789999999999999999999999999986677899999999999999999
Q ss_pred HHHHHHHHHhhh
Q 003913 488 EKAEEIFNHMHS 499 (787)
Q Consensus 488 ~~A~~l~~~m~~ 499 (787)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.7e-09 Score=109.86 Aligned_cols=225 Identities=13% Similarity=0.112 Sum_probs=155.8
Q ss_pred cCCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCC-CCHHHHHHHH
Q 003913 309 DNIDKERISLLKKEMQQ-------AGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES------DNG-IPTPAFVYKM 374 (787)
Q Consensus 309 ~~g~~~~a~~l~~~m~~-------~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~-~~~~~~~~li 374 (787)
..|++++|..+|++..+ ........++..+...|...|++++|...+++..+. +-. ....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 44555555555554443 222224567888999999999999999999988765 211 2356788899
Q ss_pred HHHHHcCChHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHHHH
Q 003913 375 EAYAKIGEFMKSLEIFREMQER------LG-SASVPAYHKIIELLCKAEETELTESLMKEFVET------GMKP-LMPSY 440 (787)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~------g~-~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t~ 440 (787)
..|...|++++|.+.|++.... .. +....+|..+...|...|++++|...++++.+. +-.| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999998754 11 223567888999999999999999999998874 1123 35678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHhhhCCCCCC
Q 003913 441 INLTNMYLNLGMHDRLHLAFSECLEK---------CRPNRTIYGIYLESLKNAG------NIEKAEEIFNHMHSDQTIGV 505 (787)
Q Consensus 441 ~~li~~~~~~g~~~~a~~~~~~m~~~---------~~p~~~~~~~li~~~~~~g------~~~~A~~l~~~m~~~~~~~p 505 (787)
..+...|...|++++|...++++.+. .......|..+...+...+ .+.++...++...... +.
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 250 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS--PT 250 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC--HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC--HH
Confidence 89999999999999999999998752 1222334444444444332 2444444454444331 33
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 506 NTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 506 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
...++..+...|...|++++|..+|++.++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467889999999999999999999999875
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2.1e-08 Score=88.52 Aligned_cols=128 Identities=15% Similarity=0.149 Sum_probs=73.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 003913 405 YHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA 484 (787)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~ 484 (787)
|..+...+...|++++|..+++++.+.. +.+..++..+...+...|++++|...|+.+.+..+.+...|..+...|.+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 3444444555555555555555554432 223445555555555555555555555555553344555666666666666
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 485 GNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 485 g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
|++++|.++|+++.+.. +.+..++..+...|.+.|++++|...|+++.+
T Consensus 83 ~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666666553 34556666666666666666666666666654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.96 E-value=2.8e-07 Score=98.01 Aligned_cols=274 Identities=9% Similarity=0.020 Sum_probs=154.1
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHh----HHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHH----H
Q 003913 185 KLADYMGKERKFAKCRDIFDDIINQGRVPSEM----TFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPS----L 256 (787)
Q Consensus 185 ~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~----ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~----t 256 (787)
.+...+...|++++|...+++........+.. +++.+...+. ..|++++|...+++......-.++.. +
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH---CKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 33445567788888888888877653222221 4555555666 67888888888888765310011111 1
Q ss_pred HHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCC--CC-HH
Q 003913 257 HNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFE--EG-KE 333 (787)
Q Consensus 257 ~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~--p~-~~ 333 (787)
+..+-..+... |++++|...+++.+... ...+.. |. ..
T Consensus 96 ~~~la~~~~~~------G~~~~A~~~~~~al~~~---------------------------------~~~~~~~~~~~~~ 136 (373)
T 1hz4_A 96 LIQQSEILFAQ------GFLQTAWETQEKAFQLI---------------------------------NEQHLEQLPMHEF 136 (373)
T ss_dssp HHHHHHHHHHT------TCHHHHHHHHHHHHHHH---------------------------------HHTTCTTSTHHHH
T ss_pred HHHHHHHHHHC------CCHHHHHHHHHHHHHHH---------------------------------HHhccccCcHHHH
Confidence 11122222222 35555555544433210 011111 22 23
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHH--
Q 003913 334 VLLSVLRVCAKEGDVEDAEKTWLRLLESDNGI----PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASV-PAYH-- 406 (787)
Q Consensus 334 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~-- 406 (787)
++..+...+...|++++|...+++..+..... ...++..+...+...|++++|...+++.......++. ..+.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 45556667777888888888887766543211 2345666777788888888888888877643111111 1121
Q ss_pred ---HHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCH-HHH
Q 003913 407 ---KIIELLCKAEETELTESLMKEFVETGMKP---LMPSYINLTNMYLNLGMHDRLHLAFSECLE-----KCRPNR-TIY 474 (787)
Q Consensus 407 ---~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~p~~-~~~ 474 (787)
..+..+...|+.++|...+++.......+ ....+..+...+...|++++|...++.... +..++. .++
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 296 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 22234667788888887777765432111 123456666777777777777777777654 111122 255
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 475 GIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 475 ~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
..+...|...|+.++|...+++....
T Consensus 297 ~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 297 LLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56666777777777777777776553
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.95 E-value=9.7e-08 Score=101.93 Aligned_cols=314 Identities=8% Similarity=-0.031 Sum_probs=201.5
Q ss_pred ccCHHHHHHHHHHH--HccCChhHHHHHHHHHHHC--CC--CCCHhHHHHHHHHHhcC-----CcCC---CHHHHHHHHH
Q 003913 177 RFDFALATKLADYM--GKERKFAKCRDIFDDIINQ--GR--VPSEMTFHILIVAYLSA-----PVQG---CLDEACSIYN 242 (787)
Q Consensus 177 ~~~~~~~~~li~~~--~~~g~~~~A~~~f~~m~~~--g~--~pd~~ty~~li~~~~~~-----~~~g---~~~~A~~l~~ 242 (787)
.|+..+-+.|-++| .+.+++++|..+++++.+. .+ .+++..|-.++..-... .... ......+.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 44566666677777 6778888888888776552 12 12233333333321000 0001 1122225555
Q ss_pred HHHHhCCCCC-C-HHH--HHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCc-cC--HHHHHHHHHHhhhccCCCHHH
Q 003913 243 RMIQLGGYQP-R-PSL--HNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLE-IQ--KDIYSGLIWLHSYQDNIDKER 315 (787)
Q Consensus 243 ~m~~~~g~~p-d-~~t--~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~-p~--~~~~~~li~~~~~~~~g~~~~ 315 (787)
.+... ..+ + ... |......+.... |++++|...|++..+.... ++ .........+..+...|+++.
T Consensus 87 ~i~~~--~~~~~~~l~~~~~~~~g~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~ 159 (378)
T 3q15_A 87 TIETP--QKKLTGLLKYYSLFFRGMYEFDQ-----KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHV 159 (378)
T ss_dssp HHHGG--GHHHHHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcc--CCCCccHHHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHH
Confidence 55432 011 1 111 222222222222 6999999999998765321 22 122223333477889999999
Q ss_pred HHHHHHHHHHcC--C---CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCChH
Q 003913 316 ISLLKKEMQQAG--F---EE-GKEVLLSVLRVCAKEGDVEDAEKTWLRLLES----DNG-IPTPAFVYKMEAYAKIGEFM 384 (787)
Q Consensus 316 a~~l~~~m~~~g--~---~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~ 384 (787)
|...+.+..+.- . .+ ...+++.+..+|...|++++|.+.+++..+. +.. ....+++.+...|...|+++
T Consensus 160 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~ 239 (378)
T 3q15_A 160 SMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQ 239 (378)
T ss_dssp HHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 999998876531 1 11 2456788999999999999999999987763 111 12356778999999999999
Q ss_pred HHHHHHHHHHH-----cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHHHhcCC---
Q 003913 385 KSLEIFREMQE-----RLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGM---KPL-MPSYINLTNMYLNLGM--- 452 (787)
Q Consensus 385 ~A~~~~~~m~~-----~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~-~~t~~~li~~~~~~g~--- 452 (787)
+|.+.|++..+ .. +....++..+...+.+.|++++|...+++..+..- .|. ...+..+...|...++
T Consensus 240 ~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~ 318 (378)
T 3q15_A 240 MAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK 318 (378)
T ss_dssp HHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHH
T ss_pred HHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence 99999999876 32 22366788899999999999999999999987421 122 3456666677778888
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 453 HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 453 ~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
+.+|...++... ..+.....+..+...|.+.|++++|.+.|++..+
T Consensus 319 ~~~al~~~~~~~-~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 319 IHDLLSYFEKKN-LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777777632 1122335677899999999999999999998865
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.94 E-value=2.4e-07 Score=98.52 Aligned_cols=261 Identities=10% Similarity=-0.058 Sum_probs=188.0
Q ss_pred hhHHHHHHHHHHHHHcCCccCHHH--HHHHHHHhhhccCCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHhcC
Q 003913 274 YYLQQAEFIFHNLLTSGLEIQKDI--YSGLIWLHSYQDNIDKERISLLKKEMQQAGF-EEGK----EVLLSVLRVCAKEG 346 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~-~p~~----~t~~~li~~~~~~g 346 (787)
|++++|...+++.+......+... .........+...|++++|...+++.....- .++. .++..+...+...|
T Consensus 28 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G 107 (373)
T 1hz4_A 28 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQG 107 (373)
T ss_dssp TCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCC
Confidence 699999999999887653333321 1223334667788999999999988765311 1122 33567778889999
Q ss_pred ChHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhc
Q 003913 347 DVEDAEKTWLRLLES----DNG--I-PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSA----SVPAYHKIIELLCKA 415 (787)
Q Consensus 347 ~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~li~~~~~~ 415 (787)
++++|...+++..+. +.. | ...++..+...|...|++++|...+++........ ...+|..+...+...
T Consensus 108 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 187 (373)
T 1hz4_A 108 FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR 187 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHc
Confidence 999999999987763 211 2 23456678889999999999999999987542211 235678888999999
Q ss_pred CChHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHhcC
Q 003913 416 EETELTESLMKEFVETGMKPL--MPSYI----NLTNMYLNLGMHDRLHLAFSECLEKCRP----NRTIYGIYLESLKNAG 485 (787)
Q Consensus 416 g~~~~A~~l~~~m~~~g~~p~--~~t~~----~li~~~~~~g~~~~a~~~~~~m~~~~~p----~~~~~~~li~~~~~~g 485 (787)
|++++|...+++.....-.++ ..... ..+..+...|++++|...+.......+. ....+..+...+...|
T Consensus 188 g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 267 (373)
T 1hz4_A 188 GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLG 267 (373)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcC
Confidence 999999999999876321211 12111 3345578999999999999998762211 1346778889999999
Q ss_pred CHHHHHHHHHHhhhC----CCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 486 NIEKAEEIFNHMHSD----QTIGVNT-RSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 486 ~~~~A~~l~~~m~~~----~~~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
++++|...+++.... | .+++. .++..+..++...|+.++|...+++...
T Consensus 268 ~~~~A~~~l~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 268 EFEPAEIVLEELNENARSLR-LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999987653 2 11223 3677778889999999999999998875
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.94 E-value=5.3e-08 Score=85.91 Aligned_cols=130 Identities=17% Similarity=0.180 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003913 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL 448 (787)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 448 (787)
.|..+...|...|++++|..+|+++.+.. +.+...|..+...+...|++++|..+++++.+.+ +.+...+..+...|.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45667777777788888888887777653 2356677777777777888888888888777654 345667777888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 449 NLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
..|++++|...++.+.+..+.+..++..+...|.+.|++++|...|+++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8888888888888887755667788888888888888888888888888764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.92 E-value=8.8e-09 Score=104.44 Aligned_cols=224 Identities=13% Similarity=0.037 Sum_probs=151.1
Q ss_pred hHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCC
Q 003913 275 YLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQA------GFEE-GKEVLLSVLRVCAKEGD 347 (787)
Q Consensus 275 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~------g~~p-~~~t~~~li~~~~~~g~ 347 (787)
.+++|.+++..+...+.. .........+..+...|++++|...+++..+. +-.| ...++..+...|...|+
T Consensus 23 ~~~~al~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 100 (283)
T 3edt_B 23 LCKQALEDLEKTSGHDHP--DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 100 (283)
T ss_dssp HHHHHHHHHHHHHCSSSH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc
Confidence 344444444444332322 23333344458889999999999999998765 3233 34578899999999999
Q ss_pred hHHHHHHHHHHHhCC-----C--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHH
Q 003913 348 VEDAEKTWLRLLESD-----N--GIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER------LGSA-SVPAYHKIIELLC 413 (787)
Q Consensus 348 ~~~A~~~~~~m~~~~-----~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~li~~~~ 413 (787)
+++|.+.+++..+.. . .....++..+...|...|++++|...|++..+. +..| ...++..+...|.
T Consensus 101 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 180 (283)
T 3edt_B 101 YKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYL 180 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 999999999988751 1 123567888999999999999999999998764 1122 3567889999999
Q ss_pred hcCChHHHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003913 414 KAEETELTESLMKEFVET-------GMKPL-MPSYINLTNMYLNLGM------HDRLHLAFSECLEKCRPNRTIYGIYLE 479 (787)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~-------g~~p~-~~t~~~li~~~~~~g~------~~~a~~~~~~m~~~~~p~~~~~~~li~ 479 (787)
..|++++|..+++++.+. ...+. ...+..+...+...+. +..+...+.......+....++..+..
T Consensus 181 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 260 (283)
T 3edt_B 181 KQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGA 260 (283)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 999999999999998863 12222 2233333333333332 233333333222122334567889999
Q ss_pred HHHhcCCHHHHHHHHHHhhhC
Q 003913 480 SLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 480 ~~~~~g~~~~A~~l~~~m~~~ 500 (787)
.|.+.|++++|..+|++..+.
T Consensus 261 ~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 261 LYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999998764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=9e-08 Score=98.10 Aligned_cols=211 Identities=10% Similarity=0.020 Sum_probs=156.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChHHH
Q 003913 312 DKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES----DNGI-PTPAFVYKMEAYAKIGEFMKS 386 (787)
Q Consensus 312 ~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A 386 (787)
++++|...|.+. ...|...|++++|...|.+..+. |-.+ ...+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 377777777665 44677899999999999887664 2111 146788899999999999999
Q ss_pred HHHHHHHHHcCCC-CC----HHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHH
Q 003913 387 LEIFREMQERLGS-AS----VPAYHKIIELLCKA-EETELTESLMKEFVETGMK-PL----MPSYINLTNMYLNLGMHDR 455 (787)
Q Consensus 387 ~~~~~~m~~~g~~-p~----~~t~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~-p~----~~t~~~li~~~~~~g~~~~ 455 (787)
+..|++..+.... .+ ..+|+.+...|... |++++|...|++.++..-. .+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999987643110 11 34788899999996 9999999999998863110 11 4578899999999999999
Q ss_pred HHHHHHHHHhcCC--CCH-----HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH------HHHHHHHHHHH--cC
Q 003913 456 LHLAFSECLEKCR--PNR-----TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT------RSCNIILSAYL--SS 520 (787)
Q Consensus 456 a~~~~~~m~~~~~--p~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~------~t~~~li~~~~--~~ 520 (787)
|...|++..+..+ +.. .+|..+..+|...|++++|...|++..+.. |+. ..+..++.+|. ..
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED---PNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCCCcHHHHHHHHHHHHHHcCCH
Confidence 9999999987322 221 267888889999999999999999998743 432 13455666665 46
Q ss_pred CCHHHHHHHHHHHHHcCCccCHHH
Q 003913 521 GDFVKAEKIYDLMCLKKYEIESAW 544 (787)
Q Consensus 521 g~~~~A~~~~~~m~~~g~~~~p~~ 544 (787)
+++++|++.|+++.. ++|..
T Consensus 254 ~~~~~A~~~~~~~~~----l~~~~ 273 (292)
T 1qqe_A 254 EQLSEHCKEFDNFMR----LDKWK 273 (292)
T ss_dssp TTHHHHHHHHTTSSC----CCHHH
T ss_pred HHHHHHHHHhccCCc----cHHHH
Confidence 779999999987764 67764
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.7e-07 Score=92.65 Aligned_cols=183 Identities=10% Similarity=0.048 Sum_probs=117.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC-HHHHH
Q 003913 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIP--TPAFVYKMEAYAKIGEFMKSLEIFREMQERLG-SAS-VPAYH 406 (787)
Q Consensus 331 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~ 406 (787)
+...+..+...+.+.|++++|...|+++.+..+... ..++..+..+|.+.|++++|...|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 455566666677777777777777777777653211 45666677777777777777777777766521 111 34455
Q ss_pred HHHHHHHh--------cCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 003913 407 KIIELLCK--------AEETELTESLMKEFVETGMKPL-MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIY 477 (787)
Q Consensus 407 ~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~l 477 (787)
.+..++.. .|++++|...|+++++.. |+ ......+.. +..+.. .-...+..+
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~--------------~~~~~~---~~~~~~~~l 154 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQK--------------IRELRA---KLARKQYEA 154 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHH--------------HHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHH--------------HHHHHH---HHHHHHHHH
Confidence 56666666 677777777777776632 22 111111100 000000 001224667
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCC----HHHHHHHHHHHHcC----------CCHHHHHHHHHHHHH
Q 003913 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVN----TRSCNIILSAYLSS----------GDFVKAEKIYDLMCL 535 (787)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~~~~~p~----~~t~~~li~~~~~~----------g~~~~A~~~~~~m~~ 535 (787)
...|.+.|++++|+..|+++.+.. |+ ...+..+..+|... |++++|+..|++.++
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAY---PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC---TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 888999999999999999998864 33 45777888888866 889999999999987
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=2.4e-07 Score=94.93 Aligned_cols=238 Identities=9% Similarity=0.074 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHH
Q 003913 236 EACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKER 315 (787)
Q Consensus 236 ~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~ 315 (787)
+|.+++.+..+. +++....| .++ +.. ..+++++|...|++.. ..+...|++++
T Consensus 3 ~a~~~~~~a~k~--~~~~~~~~-~~~----~~~---~~~~~~~A~~~~~~a~-----------------~~~~~~g~~~~ 55 (292)
T 1qqe_A 3 DPVELLKRAEKK--GVPSSGFM-KLF----SGS---DSYKFEEAADLCVQAA-----------------TIYRLRKELNL 55 (292)
T ss_dssp CHHHHHHHHHHH--SSCCCTHH-HHH----SCC---SHHHHHHHHHHHHHHH-----------------HHHHHTTCTHH
T ss_pred cHHHHHHHHHHH--hCcCCCcc-hhc----CCC---CCccHHHHHHHHHHHH-----------------HHHHHcCCHHH
Confidence 577788888775 44432222 222 211 0136999999998873 34567789999
Q ss_pred HHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHHHc-CChH
Q 003913 316 ISLLKKEMQQA----GFEEG-KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGI-P----TPAFVYKMEAYAKI-GEFM 384 (787)
Q Consensus 316 a~~l~~~m~~~----g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~----~~~~~~li~~~~~~-g~~~ 384 (787)
|...|.+..+. |-.++ ..+|+.+..+|.+.|++++|...+++..+..... + ..+++.+...|... |+++
T Consensus 56 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~ 135 (292)
T 1qqe_A 56 AGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYA 135 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHH
Confidence 99999877653 32222 4688999999999999999999999887642111 1 35788899999996 9999
Q ss_pred HHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCH
Q 003913 385 KSLEIFREMQERLGS-AS----VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLM------PSYINLTNMYLNLGMH 453 (787)
Q Consensus 385 ~A~~~~~~m~~~g~~-p~----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~li~~~~~~g~~ 453 (787)
+|+..|++..+.... .+ ..+|+.+...+.+.|++++|...|++..+....... .+|..+..+|...|++
T Consensus 136 ~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 215 (292)
T 1qqe_A 136 KAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA 215 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCH
Confidence 999999998753111 01 356888999999999999999999999985432221 2678888999999999
Q ss_pred HHHHHHHHHHHhcCCCC-----HHHHHHHHHHHH--hcCCHHHHHHHHHHhhhC
Q 003913 454 DRLHLAFSECLEKCRPN-----RTIYGIYLESLK--NAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 454 ~~a~~~~~~m~~~~~p~-----~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~ 500 (787)
++|...|++.++..+.. ...+..++..|. ..+++++|+..|+++...
T Consensus 216 ~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 216 VAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 99999999987622111 123455666665 457899999999888764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.78 E-value=7.4e-08 Score=111.15 Aligned_cols=174 Identities=10% Similarity=-0.015 Sum_probs=148.2
Q ss_pred HhcCChHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003913 343 AKEGDVEDAEKTWLRLL--------ESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCK 414 (787)
Q Consensus 343 ~~~g~~~~A~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 414 (787)
...|++++|.+.+++.. +... .+...+..+...|.+.|++++|++.|++..+... -+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 68899999999999998 4443 3567888899999999999999999999987633 377899999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003913 415 AEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIF 494 (787)
Q Consensus 415 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 494 (787)
.|++++|...|++.++.. +-+...+..+..+|.+.|++++ ...|++.++..+.+...|..+..+|.+.|++++|++.|
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999854 3357889999999999999999 99999999877788999999999999999999999999
Q ss_pred HHhhhCCCCCCCHHHHHHHHHHHHcCCC
Q 003913 495 NHMHSDQTIGVNTRSCNIILSAYLSSGD 522 (787)
Q Consensus 495 ~~m~~~~~~~p~~~t~~~li~~~~~~g~ 522 (787)
++..+.+ +-+...|..+..++...|+
T Consensus 558 ~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HhhcccC--cccHHHHHHHHHHHHccCC
Confidence 9999864 3346788888888877655
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.76 E-value=4.5e-06 Score=85.01 Aligned_cols=241 Identities=10% Similarity=0.042 Sum_probs=187.1
Q ss_pred hHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcC--ChHHH
Q 003913 275 YLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGK-EVLLSVLRVCAKEG--DVEDA 351 (787)
Q Consensus 275 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~-~t~~~li~~~~~~g--~~~~A 351 (787)
.+.++...|..+.+.|- ..++|+.+++.+... .|+. .+|+.--.++...| +++++
T Consensus 31 ~y~~~~~~~~a~~~~~e--------------------~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~ee 88 (306)
T 3dra_A 31 DYKQIMGLLLALMKAEE--------------------YSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDE 88 (306)
T ss_dssp HHHHHHHHHHHHHHTTC--------------------CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHH
T ss_pred HHHHHHHHHHHHHHcCC--------------------CCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHH
Confidence 55666666666555442 246788888888773 5654 45777777777788 99999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHH----HHc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH--HHH
Q 003913 352 EKTWLRLLESDNGIPTPAFVYKMEAY----AKI---GEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETE--LTE 422 (787)
Q Consensus 352 ~~~~~~m~~~~~~~~~~~~~~li~~~----~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~--~A~ 422 (787)
.+.++.++...++ +..+|+.--..+ .+. +++++++++++++.+...+ |..+|+.-.-.+.+.|.++ +++
T Consensus 89 L~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL 166 (306)
T 3dra_A 89 LDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKEL 166 (306)
T ss_dssp HHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHH
Confidence 9999999988765 567777654444 555 7899999999999987544 8889988888888889888 999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH-HHHHHH
Q 003913 423 SLMKEFVETGMKPLMPSYINLTNMYLNLGM------HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEK-AEEIFN 495 (787)
Q Consensus 423 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~------~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~-A~~l~~ 495 (787)
+.++++++.. .-|..+|+.-...+.+.+. ++++.+.+..++...+-|...|+.+-..+.+.|+..+ +.++.+
T Consensus 167 ~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~ 245 (306)
T 3dra_A 167 SFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSL 245 (306)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHH
Confidence 9999999876 4577888877777777776 8999999999988778899999999999999988544 556777
Q ss_pred HhhhCC-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHH
Q 003913 496 HMHSDQ-TIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESA 543 (787)
Q Consensus 496 ~m~~~~-~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~ 543 (787)
+..+.+ .-+.+...+..+...|.+.|+.++|+++++.+.++ .+|.
T Consensus 246 ~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~---~Dpi 291 (306)
T 3dra_A 246 QFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK---YNPI 291 (306)
T ss_dssp TTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCGG
T ss_pred HHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc---cChH
Confidence 766532 01357889999999999999999999999999863 4665
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.5e-07 Score=91.85 Aligned_cols=180 Identities=10% Similarity=0.079 Sum_probs=131.9
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-CHHHHHHH
Q 003913 300 GLIWLHSYQDNIDKERISLLKKEMQQAGFEEG----KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG-I-PTPAFVYK 373 (787)
Q Consensus 300 ~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~-~~~~~~~l 373 (787)
.+..+..+.+.|++++|...|+++.+.. |+ ...+..+..+|.+.|++++|...|++..+..+. | ...++..+
T Consensus 18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 18 AFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 3444577889999999999999998853 43 567888999999999999999999999987542 2 24567778
Q ss_pred HHHHHH--------cCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003913 374 MEAYAK--------IGEFMKSLEIFREMQERLGSAS-VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLT 444 (787)
Q Consensus 374 i~~~~~--------~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 444 (787)
..+|.+ .|++++|...|++..+.. |+ ...+.++.. +..+... ....+..+.
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~--------------~~~~~~~----~~~~~~~la 155 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQK--------------IRELRAK----LARKQYEAA 155 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHH--------------HHHHHHH----HHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHH--------------HHHHHHH----HHHHHHHHH
Confidence 888998 999999999999998763 33 222222211 1111100 012356677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhc----------CCHHHHHHHHHHhhhCC
Q 003913 445 NMYLNLGMHDRLHLAFSECLEKCRP---NRTIYGIYLESLKNA----------GNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~m~~~~~p---~~~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~~ 501 (787)
..|.+.|++++|...|+.+++..+. ....+..+..+|... |++++|...|+++.+..
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 8888889999999988888773332 356777888888766 88899999999988863
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.2e-07 Score=87.12 Aligned_cols=124 Identities=11% Similarity=-0.007 Sum_probs=86.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC-
Q 003913 408 IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGN- 486 (787)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~- 486 (787)
+..+|.+.|++++|...|++.++.. +-+..++..+..+|...|++++|...|++.++..+.+..+|..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence 6777788888888888888877753 33577788888888888888888888888877666777888888877766553
Q ss_pred -HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 487 -IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 487 -~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.+.+...++..... .|....+..+..++...|++++|+..|++.++
T Consensus 139 ~~~~~~~~~~~~~~~---~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 139 EKKKLETDYKKLSSP---TKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHC---CC---CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCC---CchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34455556555432 23333455556666777888888888888875
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.74 E-value=1e-06 Score=85.25 Aligned_cols=176 Identities=13% Similarity=0.094 Sum_probs=130.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----ChHHHHHHH
Q 003913 350 DAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAE----ETELTESLM 425 (787)
Q Consensus 350 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g----~~~~A~~l~ 425 (787)
+|.+.|++..+.| +..++..|...|...+++++|++.|++..+.| +...+..|...|.. + +.++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566677777765 66777778888888888888888888877764 56667777777766 5 788888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 003913 426 KEFVETGMKPLMPSYINLTNMYLN----LGMHDRLHLAFSECLEKCRP--NRTIYGIYLESLKN----AGNIEKAEEIFN 495 (787)
Q Consensus 426 ~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~~~p--~~~~~~~li~~~~~----~g~~~~A~~l~~ 495 (787)
++..+.| +..++..|...|.. .+++++|...|++..+.... +..++..|...|.. .+++++|+.+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8887755 56677777777776 77888888888887762221 26788888888888 778889999998
Q ss_pred HhhhCCCCCCCHHHHHHHHHHHHcC-C-----CHHHHHHHHHHHHHcCC
Q 003913 496 HMHSDQTIGVNTRSCNIILSAYLSS-G-----DFVKAEKIYDLMCLKKY 538 (787)
Q Consensus 496 ~m~~~~~~~p~~~t~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g~ 538 (787)
+..+.+ .+...+..|...|... | +.++|..+|++..+.|.
T Consensus 154 ~A~~~~---~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLS---RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTS---CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcC---CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 888762 2555777777777653 3 88899999988887663
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.73 E-value=8e-07 Score=91.70 Aligned_cols=227 Identities=8% Similarity=-0.037 Sum_probs=160.1
Q ss_pred ChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 003913 272 SKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDA 351 (787)
Q Consensus 272 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 351 (787)
..|++++|.+++++..+.... ..+...++++.|...|.+. ...|...|++++|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~------------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT------------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQA 55 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC------------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc------------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHH
Confidence 347999999999988654321 0111257888888887765 4567789999999
Q ss_pred HHHHHHHHhCCCCC-C----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--C-CCC--HHHHHHHHHHHHhcCChHHH
Q 003913 352 EKTWLRLLESDNGI-P----TPAFVYKMEAYAKIGEFMKSLEIFREMQERL--G-SAS--VPAYHKIIELLCKAEETELT 421 (787)
Q Consensus 352 ~~~~~~m~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~-~p~--~~t~~~li~~~~~~g~~~~A 421 (787)
...|.+..+..... + ..+|+.+...|.+.|++++|+..|++..+.- . .+. ..+++.+...|.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 99998876642110 1 3478888999999999999999999875431 1 111 3567888888888 999999
Q ss_pred HHHHHHHHHcCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHhcCCHHHH
Q 003913 422 ESLMKEFVETGM---KP--LMPSYINLTNMYLNLGMHDRLHLAFSECLEKC--RPN----RTIYGIYLESLKNAGNIEKA 490 (787)
Q Consensus 422 ~~l~~~m~~~g~---~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~--~p~----~~~~~~li~~~~~~g~~~~A 490 (787)
...|++.++..- .+ ...++..+...|.+.|++++|...|++.++.. .++ ..++..++..+...|++++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 999998876211 11 14678889999999999999999999987611 111 23677777888888999999
Q ss_pred HHHHHHhhhCCCCCCC---HHHHHHHHHHHHcCCCHHHHHH
Q 003913 491 EEIFNHMHSDQTIGVN---TRSCNIILSAYLSSGDFVKAEK 528 (787)
Q Consensus 491 ~~l~~~m~~~~~~~p~---~~t~~~li~~~~~~g~~~~A~~ 528 (787)
...|++.. ...-.++ ......++.++ ..|+.+.+.+
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999988 4310011 22445556655 5677766655
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.71 E-value=7e-07 Score=86.22 Aligned_cols=165 Identities=13% Similarity=0.103 Sum_probs=114.0
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 003913 341 VCAKEGDVEDAEKTWLRLLESDNGIPTPAFVY----------------KMEAYAKIGEFMKSLEIFREMQERLGSASVPA 404 (787)
Q Consensus 341 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 404 (787)
.+...|++++|...|++..+..+. +...|.. +..+|.+.|++++|+..|++..+... -+...
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~ 90 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP-NNVDC 90 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHH
Confidence 344555555555555555554321 2333444 88889999999999999999887642 36788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCH--HHHHHHHHH
Q 003913 405 YHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM--HDRLHLAFSECLEKCRPNR--TIYGIYLES 480 (787)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~--~~~a~~~~~~m~~~~~p~~--~~~~~li~~ 480 (787)
|..+...+...|++++|...|++.++.. +-+..++..+..+|...|. ...+...+.... .|+. ..+..+..+
T Consensus 91 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~ 166 (208)
T 3urz_A 91 LEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS---SPTKMQYARYRDGLS 166 (208)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh---CCCchhHHHHHHHHH
Confidence 8899999999999999999999998854 4467888888888876654 344555555543 3333 344555667
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHH
Q 003913 481 LKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIIL 514 (787)
Q Consensus 481 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li 514 (787)
+...|++++|+..|++..+. .|+......+.
T Consensus 167 ~~~~~~~~~A~~~~~~al~l---~P~~~~~~~l~ 197 (208)
T 3urz_A 167 KLFTTRYEKARNSLQKVILR---FPSTEAQKTLD 197 (208)
T ss_dssp HHHHHTHHHHHHHHHHHTTT---SCCHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh---CCCHHHHHHHH
Confidence 77789999999999999985 47765544443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-06 Score=88.36 Aligned_cols=178 Identities=12% Similarity=0.056 Sum_probs=102.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003913 316 ISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDN-GIPTPAFVYKMEAYAKIGEFMKSLEIFREMQ 394 (787)
Q Consensus 316 a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 394 (787)
|+..|++....+ .++..++..+..++...|++++|.+++.+.+..+. .-+...+..++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555554443 44555555666677777777777777776655543 1245556666777777777777777777776
Q ss_pred HcCCCC-----CHHHHHHHHHHH--HhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003913 395 ERLGSA-----SVPAYHKIIELL--CKAE--ETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE 465 (787)
Q Consensus 395 ~~g~~p-----~~~t~~~li~~~--~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 465 (787)
+. .| +..+...|..++ ...| +..+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 34 234444444442 2223 677777777776543 34433334444466667777777777665543
Q ss_pred c----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 466 K----------CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 466 ~----------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
. .+.|..+...+|......|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 1 13455555455555555565 666666666665
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.8e-06 Score=84.53 Aligned_cols=187 Identities=10% Similarity=-0.000 Sum_probs=114.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCH-HHHH
Q 003913 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIP--TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGS-ASV-PAYH 406 (787)
Q Consensus 331 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~-~t~~ 406 (787)
+...+..+...+.+.|++++|...|+++.+..+... ...+..+..+|.+.|++++|+..|++..+.... +.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344555666777888888888888888887653311 356777788888888888888888888765322 111 1344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH------------
Q 003913 407 KIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIY------------ 474 (787)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~------------ 474 (787)
.+..++...+.. .+ ..|..+...+...|+.++|...|+.+++..+-+..++
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~ 145 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR 145 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH
Confidence 444444432100 00 0011111122223444444444444444222222221
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 003913 475 -----GIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT---RSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 475 -----~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~---~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (787)
..+...|.+.|++++|+..|+++.+.. |.+. ..+..+..+|.+.|++++|.+.++.+...
T Consensus 146 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 146 LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 345677889999999999999999873 2222 57888999999999999999999988864
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.66 E-value=1e-07 Score=109.90 Aligned_cols=158 Identities=15% Similarity=0.059 Sum_probs=139.7
Q ss_pred HHcCChHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003913 378 AKIGEFMKSLEIFREMQ--------ERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLN 449 (787)
Q Consensus 378 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 449 (787)
...|++++|++.|++.. +. .+.+...|..+...+...|++++|...+++..+.. +-+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 77899999999999998 33 23356788889999999999999999999999854 4468899999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 003913 450 LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKI 529 (787)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~ 529 (787)
.|++++|...|++.++..+.+...|..+...|.+.|++++ ++.|++..+.+ +-+...|..+..+|.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999998667788999999999999999999 99999999875 55788999999999999999999999
Q ss_pred HHHHHHcCCccCHHH
Q 003913 530 YDLMCLKKYEIESAW 544 (787)
Q Consensus 530 ~~~m~~~g~~~~p~~ 544 (787)
|++.++ .+|+.
T Consensus 557 ~~~al~----l~P~~ 567 (681)
T 2pzi_A 557 LDEVPP----TSRHF 567 (681)
T ss_dssp HHTSCT----TSTTH
T ss_pred HHhhcc----cCccc
Confidence 998875 66653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.65 E-value=1.2e-06 Score=88.25 Aligned_cols=179 Identities=15% Similarity=0.091 Sum_probs=136.7
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003913 351 AEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLG-SASVPAYHKIIELLCKAEETELTESLMKEFV 429 (787)
Q Consensus 351 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~ 429 (787)
|...+++..+.+ .++..++..+..+|...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677788777665 34566667889999999999999999999876653 2266788889999999999999999999998
Q ss_pred HcCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 430 ETGMKP-----LMPSYINLTNMY--LNLG--MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 430 ~~g~~p-----~~~t~~~li~~~--~~~g--~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
+. .| +..+...|+.++ ...| +..+|..+|+++.+. .|+..+-..|+.++.+.|++++|.+.++.+.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~-~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT-FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT-SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 74 56 356666676663 3334 899999999998764 355334444555899999999999999977653
Q ss_pred C----CC----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 501 Q----TI----GVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 501 ~----~~----~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
. .. +-|..+...+|......|+ +|.++++++.+
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 0 00 3366777566666666787 89999999997
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=5.9e-07 Score=101.56 Aligned_cols=154 Identities=7% Similarity=-0.016 Sum_probs=100.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003913 345 EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESL 424 (787)
Q Consensus 345 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l 424 (787)
.|++++|.+.+++..+.... +...|..+...|.+.|++++|.+.|++..+.. +-+...|..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 36677777777777665432 46677777777777788888888887777653 22566777777777788888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHhhhCC
Q 003913 425 MKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA---GNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 425 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~~ 501 (787)
+++..+.. +.+...+..+..+|.+.|++++|.+.|++..+..+.+..++..+...|... |++++|.+.+++..+.+
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 87777653 335677777888888888888888888887775566777788888888888 88888888888887764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=6.5e-07 Score=101.25 Aligned_cols=154 Identities=10% Similarity=-0.005 Sum_probs=122.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003913 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLA 459 (787)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 459 (787)
.|++++|.+.|++..+.. +-+...|..+...+...|++++|.+.+++..+.. +.+..++..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999987653 2367889999999999999999999999999854 34688999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHc
Q 003913 460 FSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSS---GDFVKAEKIYDLMCLK 536 (787)
Q Consensus 460 ~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~---g~~~~A~~~~~~m~~~ 536 (787)
|++..+..+.+...|..+...|.+.|++++|.+.|++..+.. +.+...+..+...+... |++++|.+.+++.++.
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999998667789999999999999999999999999999875 45788999999999999 9999999999999875
Q ss_pred C
Q 003913 537 K 537 (787)
Q Consensus 537 g 537 (787)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.63 E-value=3e-06 Score=82.83 Aligned_cols=179 Identities=8% Similarity=0.013 Sum_probs=125.0
Q ss_pred HHhhhccCCCHHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHH
Q 003913 303 WLHSYQDNIDKERISLLKKEMQQAGFE-EG-KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT--PAFVYKMEAYA 378 (787)
Q Consensus 303 ~~~~~~~~g~~~~a~~l~~~m~~~g~~-p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~ 378 (787)
.+..+.+.|++++|...|+++.+..-. |. ...+..+..+|.+.|++++|...|+++.+..+.... .++..+..+|.
T Consensus 10 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~ 89 (225)
T 2yhc_A 10 TAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNM 89 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHH
Confidence 346788899999999999999885321 21 357788899999999999999999999987654222 24545555555
Q ss_pred H------------------cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 003913 379 K------------------IGEFMKSLEIFREMQERLGSASV-PAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPS 439 (787)
Q Consensus 379 ~------------------~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 439 (787)
+ .|+.++|...|+++.+. .|+. ..+.+.... + .+...+ ...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----~------~~~~~~--------~~~ 149 (225)
T 2yhc_A 90 ALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----V------FLKDRL--------AKY 149 (225)
T ss_dssp HHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----H------HHHHHH--------HHH
T ss_pred hhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----H------HHHHHH--------HHH
Confidence 4 45677777777777664 2322 222211110 0 000000 011
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 440 YINLTNMYLNLGMHDRLHLAFSECLEKCRPNR---TIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
...+...|.+.|++++|...|+.+++..+.+. ..+..+..+|.+.|+.++|.+.++.+...+
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 23567788999999999999999998554444 578889999999999999999999988875
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=5e-07 Score=92.20 Aligned_cols=165 Identities=8% Similarity=-0.005 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHH
Q 003913 367 TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSY-INLTN 445 (787)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~li~ 445 (787)
...+..+...+.+.|++++|...|++...... -+...+..+...+...|++++|..+++++... .|+.... .....
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~ 193 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHH
Confidence 34444555555666666666666666555421 14455555666666666666666666655443 2333222 22222
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHH
Q 003913 446 MYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVK 525 (787)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~ 525 (787)
.+.+.+..++|...+++..+..+.+...+..+...|...|++++|+..|+++.+...-..+...+..++..|...|+.++
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 34455556666666666666556667777777777777777777777777777653000115667777777777777777
Q ss_pred HHHHHHHHH
Q 003913 526 AEKIYDLMC 534 (787)
Q Consensus 526 A~~~~~~m~ 534 (787)
|...|++.+
T Consensus 274 a~~~~r~al 282 (287)
T 3qou_A 274 LASXYRRQL 282 (287)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.62 E-value=3e-06 Score=81.96 Aligned_cols=176 Identities=11% Similarity=0.036 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----ChHHHHHHH
Q 003913 315 RISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIG----EFMKSLEIF 390 (787)
Q Consensus 315 ~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 390 (787)
+|++.|++..+.| +...+..+-..|...+++++|.+.|++..+.| +...+..|...|.. + +.++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566676666653 67788888888888999999999999998887 67888888888887 6 899999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 003913 391 REMQERLGSASVPAYHKIIELLCK----AEETELTESLMKEFVETGMK-PLMPSYINLTNMYLN----LGMHDRLHLAFS 461 (787)
Q Consensus 391 ~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~-p~~~t~~~li~~~~~----~g~~~~a~~~~~ 461 (787)
++..+.| +..++..|...|.. .+++++|...|++..+.|.. .+..++..|...|.. .+++++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9998765 67788888888877 78999999999999886621 127788899999988 789999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHhhhCC
Q 003913 462 ECLEKCRPNRTIYGIYLESLKNA-G-----NIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 462 ~m~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~l~~~m~~~~ 501 (787)
+..+. ..+...+..|...|... | +.++|..+|++..+.|
T Consensus 154 ~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 98874 45666788888888764 3 8999999999999887
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=8e-07 Score=90.68 Aligned_cols=166 Identities=8% Similarity=-0.029 Sum_probs=135.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH-HH
Q 003913 330 EGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYH-KI 408 (787)
Q Consensus 330 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~l 408 (787)
.+...+..+...+...|++++|...|++..+..+. +...+..+...|.+.|++++|...|++.... .|+..... ..
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 34556777888889999999999999999988754 6788888999999999999999999988765 34544332 23
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhcCC
Q 003913 409 IELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN--RTIYGIYLESLKNAGN 486 (787)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~--~~~~~~li~~~~~~g~ 486 (787)
...+...+..++|...+++..+.. +.+...+..+...|...|++++|...|..+++..+.+ ...+..|+..|...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 334667788888999999988864 4568899999999999999999999999998844444 7889999999999999
Q ss_pred HHHHHHHHHHhhh
Q 003913 487 IEKAEEIFNHMHS 499 (787)
Q Consensus 487 ~~~A~~l~~~m~~ 499 (787)
.++|...|++...
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999998887653
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.9e-07 Score=85.33 Aligned_cols=161 Identities=10% Similarity=0.040 Sum_probs=96.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhc
Q 003913 372 YKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM-YLNL 450 (787)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~-~~~~ 450 (787)
.+...+.+.|++++|...|++..+.. +-+...+..+...+...|++++|...+++..+.. |+...+..+... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhh
Confidence 34455555666666666666544331 1144555556666666666666666666554422 233222221111 1111
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 003913 451 GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIY 530 (787)
Q Consensus 451 g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~ 530 (787)
+....|...++...+..+.+...+..+...|...|++++|...|+++.+...-..+...+..+...|...|+.++|...|
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 22234566777766655667788888888888888888888888888776411112557888888888888888888888
Q ss_pred HHHHH
Q 003913 531 DLMCL 535 (787)
Q Consensus 531 ~~m~~ 535 (787)
++.+.
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.60 E-value=5.4e-05 Score=83.19 Aligned_cols=333 Identities=11% Similarity=0.057 Sum_probs=157.1
Q ss_pred hhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCC-CHHHHH
Q 003913 160 NETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG-CLDEAC 238 (787)
Q Consensus 160 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g-~~~~A~ 238 (787)
+..|+.+|+.+... ++ . |+++.|..+|++.... .|++..|..-+.-.. +.+ ..+...
T Consensus 11 i~~aR~vyer~l~~--~P-~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~---~~~~~~~~i~ 68 (493)
T 2uy1_A 11 LSSPSAIMEHARRL--YM-S--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVR---KVSQKKFKLY 68 (493)
T ss_dssp -CCHHHHHHHHHHH--HH-T--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHH---HHC----CTH
T ss_pred hHHHHHHHHHHHHH--CC-C--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHH---HhCchHHHHH
Confidence 66667777766654 22 2 6777788888777663 467777777776665 333 234566
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHH--------------
Q 003913 239 SIYNRMIQLGGYQP-RPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIW-------------- 303 (787)
Q Consensus 239 ~l~~~m~~~~g~~p-d~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~-------------- 303 (787)
.+|+.....-|..| +...|...+.-+... ...+++++.+..+|++.+.....--..++.....
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~--~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~ 146 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKI--EDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSC--SSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhc--hhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHH
Confidence 67777665434333 334454444432211 0122567777777777776321111111111100
Q ss_pred --------------------------------HhhhccC--C--C---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003913 304 --------------------------------LHSYQDN--I--D---KERISLLKKEMQQAGFEEGKEVLLSVLRVCAK 344 (787)
Q Consensus 304 --------------------------------~~~~~~~--g--~---~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~ 344 (787)
+..-... + + ..++..+|+++... ++-+...|...+..+.+
T Consensus 147 ~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~ 225 (493)
T 2uy1_A 147 GDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIG 225 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHH
Confidence 0000000 0 0 12233444444432 12233444444444445
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---------CCC---CHHHHHHHHHHH
Q 003913 345 EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERL---------GSA---SVPAYHKIIELL 412 (787)
Q Consensus 345 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p---~~~t~~~li~~~ 412 (787)
.|+++.|..++++.... + .+...|. .|+...+.++. ++.+.+.- ..+ ....|...+..+
T Consensus 226 ~~~~~~ar~i~erAi~~-P-~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~ 296 (493)
T 2uy1_A 226 IGQKEKAKKVVERGIEM-S-DGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYV 296 (493)
T ss_dssp TTCHHHHHHHHHHHHHH-C-CSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhC-C-CcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHH
Confidence 55555555555555554 1 1222221 12222111111 12211110 000 012344444444
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003913 413 CKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG-MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAE 491 (787)
Q Consensus 413 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~ 491 (787)
.+.+..+.|..+|++. +.. ..+...|......-...+ +.+.|..+|+...+..+.+...|...++...+.|+.+.|.
T Consensus 297 ~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR 374 (493)
T 2uy1_A 297 LKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENAR 374 (493)
T ss_dssp HHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4555666666676666 211 123333332222222222 4666777777666644444555555666666667777777
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 492 EIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 492 ~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
.+|+++.+ ....|...+.--...|+.+.+.++++++.
T Consensus 375 ~l~er~~k------~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 375 ALFKRLEK------TSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHSCC------BHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77766621 35566666665566677666666666665
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.4e-07 Score=85.72 Aligned_cols=140 Identities=8% Similarity=-0.009 Sum_probs=72.4
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003913 377 YAKIGEFMKSLEIFREMQERLGSA-SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDR 455 (787)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 455 (787)
+...|++++|+..+...... .| +...+..+...|.+.|++++|.+.|++.++.. +-+..+|..+..+|.+.|++++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 33445555555555544322 11 22334445555555566666666665555532 2245555556666666666666
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHhhhCCCCCCCHHHHHHHHHHHHcCC
Q 003913 456 LHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEI-FNHMHSDQTIGVNTRSCNIILSAYLSSG 521 (787)
Q Consensus 456 a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l-~~~m~~~~~~~p~~~t~~~li~~~~~~g 521 (787)
|...|+..++..+-+..+|..+...|.+.|++++|.+. +++..+.. |-+..+|......+...|
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhC
Confidence 66666665554444556666666666666665544433 35555542 334455555544444444
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=3.1e-07 Score=83.49 Aligned_cols=142 Identities=12% Similarity=0.021 Sum_probs=87.6
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 003913 342 CAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELT 421 (787)
Q Consensus 342 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 421 (787)
+...|++++|...+......... +...+-.+...|.+.|++++|++.|++..+... -+..+|..+..+|...|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHHH
Confidence 34456666666666665544321 223344566677777777777777777666532 2566677777777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 003913 422 ESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLA-FSECLEKCRPNRTIYGIYLESLKNAGN 486 (787)
Q Consensus 422 ~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~-~~~m~~~~~p~~~~~~~li~~~~~~g~ 486 (787)
...|++.++.. +-+..++..+...|.+.|+.++|.+. +++..+..+-+..+|......+.+.|+
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77777776643 22466677777777777776655444 456665455566777766666665553
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.53 E-value=3.6e-06 Score=81.21 Aligned_cols=123 Identities=16% Similarity=0.102 Sum_probs=58.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003913 373 KMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM 452 (787)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 452 (787)
+...+...|++++|.+.|++.. .|+...|..+...|...|++++|...+++..+.. +.+..++..+..+|...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 4444445555555555554432 2344445555555555555555555555544432 2234444444455555555
Q ss_pred HHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 453 HDRLHLAFSECLEKCRPNR----------------TIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 453 ~~~a~~~~~~m~~~~~p~~----------------~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
+++|...|+...+..+.+. .+|..+...|.+.|++++|.+.|++..+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 5555555554444222222 44455555555555555555555555443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.52 E-value=9.9e-07 Score=82.54 Aligned_cols=161 Identities=11% Similarity=0.082 Sum_probs=116.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HH
Q 003913 335 LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL-LC 413 (787)
Q Consensus 335 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~-~~ 413 (787)
+..+...+...|++++|...+++..+..+. +...+..+...|.+.|++++|...|++..... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 344556677888999999888887776543 57788888888889999999999988876553 344333222211 12
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhcCCHHHHH
Q 003913 414 KAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCR--PNRTIYGIYLESLKNAGNIEKAE 491 (787)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~--p~~~~~~~li~~~~~~g~~~~A~ 491 (787)
..+...+|...+++..+.. +-+...+..+..++...|++++|...|+++++..+ .+...+..+...|...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2233345778888887743 33578888899999999999999999998887332 23668888999999999999999
Q ss_pred HHHHHhhh
Q 003913 492 EIFNHMHS 499 (787)
Q Consensus 492 ~l~~~m~~ 499 (787)
..|++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887653
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.5e-06 Score=86.93 Aligned_cols=211 Identities=9% Similarity=-0.078 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---CCHH
Q 003913 384 MKSLEIFREMQERLGSASVPAYHKIIELLCKAE--ETELTESLMKEFVETGMKPLMPSYINLTNMY----LNL---GMHD 454 (787)
Q Consensus 384 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~----~~~---g~~~ 454 (787)
++|++++++++..+.. +...|+.--..+...| .+++++++++.++... +-+..+++.--..+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 4566666666654221 3444555555555555 6666666666666533 22233343333333 333 5677
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCC------HHHH
Q 003913 455 RLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIE--KAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGD------FVKA 526 (787)
Q Consensus 455 ~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~------~~~A 526 (787)
+++.+++.+++..+.|..+|+.-.-.+.+.|.++ ++++.++++.+.+ +-|...|+.-...+.+.|. ++++
T Consensus 128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 8888888887767778888888887788888777 8888888888875 4577788777777777776 7888
Q ss_pred HHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcc-eeEE--EEEc--
Q 003913 527 EKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKR-HMIR--FQFN-- 601 (787)
Q Consensus 527 ~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~--~~~~-- 601 (787)
++.+++++. .+|. +...|.-+...+...|....+. .... ..++
T Consensus 206 l~~~~~aI~----~~p~----------------------------n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 253 (306)
T 3dra_A 206 LNYVKDKIV----KCPQ----------------------------NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKD 253 (306)
T ss_dssp HHHHHHHHH----HCSS----------------------------CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGT
T ss_pred HHHHHHHHH----hCCC----------------------------CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCC
Confidence 888888876 4444 2455666555555555422211 1222 3333
Q ss_pred -cCCcccHHHHHHHHHHchhhcCCCccccC
Q 003913 602 -ENSRMHSVLRRYLYDQYHEWLHPSFKVSD 630 (787)
Q Consensus 602 -p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 630 (787)
|.++.+...++++|.+.|+.++|...+..
T Consensus 254 ~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 254 QVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp EESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 66777788888888877776665555433
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.52 E-value=2.4e-06 Score=82.48 Aligned_cols=128 Identities=13% Similarity=0.019 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003913 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLK 482 (787)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~ 482 (787)
..+..+...+...|++++|...|++. +.|+..++..+..+|.+.|++++|...|+...+..+.+..+|..+...|.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 34556778888999999999999877 46788999999999999999999999999999866778999999999999
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCCH----------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 003913 483 NAGNIEKAEEIFNHMHSDQTIGVNT----------------RSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 483 ~~g~~~~A~~l~~~m~~~~~~~p~~----------------~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (787)
+.|++++|++.|++..+.. +.+. ..|..+..+|.+.|++++|...|++..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL--RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT--TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhC--CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999999999999863 2333 78999999999999999999999999963
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.6e-05 Score=81.26 Aligned_cols=168 Identities=10% Similarity=-0.036 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--H
Q 003913 368 PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASV-----PAYHKIIELLCKAEETELTESLMKEFVETGM---KPL--M 437 (787)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~ 437 (787)
..+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455677888888888888888877765322111 2234455667778899999999988875321 122 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CCCC-C
Q 003913 438 PSYINLTNMYLNLGMHDRLHLAFSECLE---KCRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ---TIGV-N 506 (787)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~---~~~p-~ 506 (787)
.+|+.+...|...|++++|...|++..+ ..+.+ ..+|+.+...|.+.|++++|++.+++..+.. .... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 5888999999999999999999999873 22222 2588999999999999999999999876531 0111 1
Q ss_pred HHHHHHHHHHHHcCCCHHHH-HHHHHHHHH
Q 003913 507 TRSCNIILSAYLSSGDFVKA-EKIYDLMCL 535 (787)
Q Consensus 507 ~~t~~~li~~~~~~g~~~~A-~~~~~~m~~ 535 (787)
..+|..+...|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 67899999999999999999 777887664
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.49 E-value=4.6e-06 Score=76.55 Aligned_cols=130 Identities=12% Similarity=-0.042 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003913 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLK 482 (787)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~ 482 (787)
..|..+...+...|++++|...+++..+.. +.+..++..+..+|...|++++|...+.+..+..+.+..+|..+...|.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345666677777777777777777777643 3357777788888888888888888888887766677888888888888
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCCHHHHHHH--HHHHHcCCCHHHHHHHHHHHHH
Q 003913 483 NAGNIEKAEEIFNHMHSDQTIGVNTRSCNII--LSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 483 ~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~l--i~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+.|++++|.+.|++..+.. +.+...+..+ +..+...|++++|++.+.....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8999999999998888764 3455555433 3447778888888888887653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.6e-06 Score=86.76 Aligned_cols=198 Identities=9% Similarity=0.017 Sum_probs=146.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 003913 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAK-EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLE 388 (787)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 388 (787)
.|++++|.+++++..+..- .. +.+ .+++++|...|.+. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4567788888877665311 11 112 47777777776654 567888999999999
Q ss_pred HHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--C-CCC--HHHHHHHHHHHHhcCCHHHHHH
Q 003913 389 IFREMQER----LGSA-SVPAYHKIIELLCKAEETELTESLMKEFVETG--M-KPL--MPSYINLTNMYLNLGMHDRLHL 458 (787)
Q Consensus 389 ~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g--~-~p~--~~t~~~li~~~~~~g~~~~a~~ 458 (787)
.|.+..+. +-.+ -..+|+.+...|...|++++|...|++.++.- . .+. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 99987643 1111 13478889999999999999999999877631 1 121 4678889999988 99999999
Q ss_pred HHHHHHhcCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC---CCCC-HHHHHHHHHHHHcCCCHHHHHH
Q 003913 459 AFSECLEKCR--PN----RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT---IGVN-TRSCNIILSAYLSSGDFVKAEK 528 (787)
Q Consensus 459 ~~~~m~~~~~--p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~---~~p~-~~t~~~li~~~~~~g~~~~A~~ 528 (787)
.|++.++..+ .+ ..+++.+...|.+.|++++|+..|++..+... ..+. ..++..+...+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999876211 11 46888999999999999999999999876310 1111 2377778888888999999999
Q ss_pred HHHHHH
Q 003913 529 IYDLMC 534 (787)
Q Consensus 529 ~~~~m~ 534 (787)
.|++.+
T Consensus 217 ~~~~al 222 (307)
T 2ifu_A 217 CVRESY 222 (307)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999987
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.4e-05 Score=81.51 Aligned_cols=163 Identities=9% Similarity=-0.016 Sum_probs=121.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 003913 373 KMEAYAKIGEFMKSLEIFREMQERLG-SASV----PAYHKIIELLCKAEETELTESLMKEFVETGMK-PL----MPSYIN 442 (787)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ 442 (787)
.+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|...+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46778888999999999998876421 2221 12334666677778999999999998873222 22 347899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh---cC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCCHHHHH
Q 003913 443 LTNMYLNLGMHDRLHLAFSECLE---KC---RPN-RTIYGIYLESLKNAGNIEKAEEIFNHMHSD----QTIGVNTRSCN 511 (787)
Q Consensus 443 li~~~~~~g~~~~a~~~~~~m~~---~~---~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~~p~~~t~~ 511 (787)
+...|...|++++|...|+++++ .. .+. ..+|..+...|.+.|++++|++.+++..+. +....-..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999999884 12 112 347889999999999999999999987652 21111267899
Q ss_pred HHHHHHHcCC-CHHHHHHHHHHHHH
Q 003913 512 IILSAYLSSG-DFVKAEKIYDLMCL 535 (787)
Q Consensus 512 ~li~~~~~~g-~~~~A~~~~~~m~~ 535 (787)
.+..+|.+.| ++++|.+.|++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999999 47999999998874
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.45 E-value=7.2e-06 Score=74.20 Aligned_cols=98 Identities=10% Similarity=-0.008 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 003913 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA 516 (787)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~ 516 (787)
...+..+...+.+.|++++|...|+..++..+.+...|..+..+|.+.|++++|+..|++..+.. |.+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHHHH
Confidence 55788888899999999999999999998778889999999999999999999999999999875 5568899999999
Q ss_pred HHcCCCHHHHHHHHHHHHHc
Q 003913 517 YLSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~ 536 (787)
|.+.|++++|+..|++.++.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999874
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.45 E-value=7e-06 Score=70.85 Aligned_cols=96 Identities=16% Similarity=0.139 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 003913 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN 483 (787)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~ 483 (787)
.|..+...+...|++++|..+++++.+.. +.+..++..+...|...|++++|...|+.+.+..+.+..++..+...|.+
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 33334444444444444444444444322 22333444444444444444444444444444333344444455555555
Q ss_pred cCCHHHHHHHHHHhhhC
Q 003913 484 AGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 484 ~g~~~~A~~l~~~m~~~ 500 (787)
.|++++|...|+++.+.
T Consensus 90 ~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 90 QGDYDEAIEYYQKALEL 106 (125)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh
Confidence 55555555555554443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.44 E-value=3.9e-06 Score=73.44 Aligned_cols=100 Identities=12% Similarity=0.121 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 003913 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAY 517 (787)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~ 517 (787)
..+......|.+.|++++|+..|++.++..+.+..+|..+..+|.+.|++++|++.|++.++.+ +.+...|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHHHHHHHHH
Confidence 4566777788888888888888888877667778888888888888888888888888888764 45677888888888
Q ss_pred HcCCCHHHHHHHHHHHHHcCCccCHH
Q 003913 518 LSSGDFVKAEKIYDLMCLKKYEIESA 543 (787)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~~g~~~~p~ 543 (787)
...|++++|++.|++.++ ++|+
T Consensus 92 ~~~~~~~~A~~~~~~al~----l~P~ 113 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ----VDPS 113 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH----HCTT
T ss_pred HHCCCHHHHHHHHHHHHH----HCcC
Confidence 888888888888888886 5555
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1.2e-05 Score=73.78 Aligned_cols=129 Identities=11% Similarity=0.098 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003913 368 PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMY 447 (787)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 447 (787)
..+..+...+...|++++|...|++..+.. +.+..+|..+...+...|++++|...+++..+.. +.+..++..+..+|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 445556667777777777777777776652 2256677777777777777777777777777653 34566777777788
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHhh
Q 003913 448 LNLGMHDRLHLAFSECLEKCRPNRTIYGIYL--ESLKNAGNIEKAEEIFNHMH 498 (787)
Q Consensus 448 ~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li--~~~~~~g~~~~A~~l~~~m~ 498 (787)
...|++++|...|++..+..+.+...+..+. ..+.+.|++++|++.+.+..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888888888888887765555666664433 33667788888888877654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.39 E-value=3.6e-05 Score=78.52 Aligned_cols=164 Identities=7% Similarity=0.015 Sum_probs=126.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHH
Q 003913 336 LSVLRVCAKEGDVEDAEKTWLRLLESDNG-IPT----PAFVYKMEAYAKIGEFMKSLEIFREMQERLGS-AS----VPAY 405 (787)
Q Consensus 336 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~ 405 (787)
...+..+...|++++|.+++++..+.... ++. ..+..+...|...|++++|+..|++..+.... ++ ..+|
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 34467788999999999999998875432 221 13334677777788999999999999874222 23 3368
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH----c-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCC-HHH
Q 003913 406 HKIIELLCKAEETELTESLMKEFVE----T-GMKPL-MPSYINLTNMYLNLGMHDRLHLAFSECLE-----KCRPN-RTI 473 (787)
Q Consensus 406 ~~li~~~~~~g~~~~A~~l~~~m~~----~-g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~p~-~~~ 473 (787)
+.+...|...|++++|...++++.+ . +..+. ..+|..+...|.+.|++++|...+++.++ +..+. ..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 9999999999999999999999885 1 22222 34889999999999999999999999875 11222 678
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHhhh
Q 003913 474 YGIYLESLKNAG-NIEKAEEIFNHMHS 499 (787)
Q Consensus 474 ~~~li~~~~~~g-~~~~A~~l~~~m~~ 499 (787)
|..+...|.+.| .+++|.+.|++...
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999999 57999999888754
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.38 E-value=1.7e-05 Score=68.35 Aligned_cols=114 Identities=17% Similarity=0.160 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003913 368 PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMY 447 (787)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 447 (787)
..|..+...|...|++++|.+.|+++.... +.+..++..+...+...|++++|..+++++.+.. +.+..++..+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 445555556666666666666666655442 2245555566666666666666666666665543 33455666666666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 003913 448 LNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN 483 (787)
Q Consensus 448 ~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~ 483 (787)
...|++++|...|+.+.+..+.+...+..+...+.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 666666666666666665444555555555555443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.1e-05 Score=70.64 Aligned_cols=107 Identities=12% Similarity=-0.024 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 003913 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN 483 (787)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~ 483 (787)
.+......|.+.|++++|...|++.++.. +.+..+|..+..+|.+.|++++|+..|++.++..+.+...|..+..+|..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 44555566666666666666666666543 33456666666666666666666666666666555566677777777777
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCCHHHHHHH
Q 003913 484 AGNIEKAEEIFNHMHSDQTIGVNTRSCNII 513 (787)
Q Consensus 484 ~g~~~~A~~l~~~m~~~~~~~p~~~t~~~l 513 (787)
.|++++|++.|++..+.. |-+...+..|
T Consensus 94 ~~~~~~A~~~~~~al~l~--P~~~~a~~~l 121 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVD--PSNEEAREGV 121 (126)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC--cCCHHHHHHH
Confidence 777777777777776653 3344444433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00042 Score=71.23 Aligned_cols=241 Identities=10% Similarity=0.010 Sum_probs=177.8
Q ss_pred hHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC-ChHHHH
Q 003913 275 YLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG-KEVLLSVLRVCAKEG-DVEDAE 352 (787)
Q Consensus 275 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g-~~~~A~ 352 (787)
++.+|...+..+...+- ..++|+++++++... .|+ ..+|+.--..+...| .++++.
T Consensus 52 ~y~~~~~~~r~~~~~~e--------------------~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL 109 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKEE--------------------KSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDEL 109 (349)
T ss_dssp HHHHHHHHHHHHHHTTC--------------------CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCC--------------------CCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHH
Confidence 56666666666655443 245788888888774 454 445676666666777 599999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHc-C-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH--------HHH
Q 003913 353 KTWLRLLESDNGIPTPAFVYKMEAYAKI-G-EFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETE--------LTE 422 (787)
Q Consensus 353 ~~~~~m~~~~~~~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~--------~A~ 422 (787)
++++.++...++ +..+|+.-...+.+. + ++++++++++++.+...+ |..+|+--.-.+.+.|..+ +++
T Consensus 110 ~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eEL 187 (349)
T 3q7a_A 110 RLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSEL 187 (349)
T ss_dssp HHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHH
Confidence 999999988865 778888877777776 7 889999999999876443 7788877666666666666 899
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH--------
Q 003913 423 SLMKEFVETGMKPLMPSYINLTNMYLNLGM-------HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI-------- 487 (787)
Q Consensus 423 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~-------~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~-------- 487 (787)
+.++++++.. .-|..+|+.....+.+.+. ++++.+.+.+.+...+-|...|+-+-..+.+.|+.
T Consensus 188 e~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~ 266 (349)
T 3q7a_A 188 DWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAI 266 (349)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccc
Confidence 9999999865 4578888888888888776 78899999888887788999999988888877753
Q ss_pred ------------HHHHHHHHHhhhCC----CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHH
Q 003913 488 ------------EKAEEIFNHMHSDQ----TIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESA 543 (787)
Q Consensus 488 ------------~~A~~l~~~m~~~~----~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~ 543 (787)
.+..+...++...+ .-.+....+..|+..|...|+.++|.++++.+.++ .||.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~---~dpi 335 (349)
T 3q7a_A 267 LPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE---YDQM 335 (349)
T ss_dssp GGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCGG
T ss_pred cccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---hChH
Confidence 44555555554431 01367889999999999999999999999999753 4554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=8.7e-06 Score=70.95 Aligned_cols=116 Identities=13% Similarity=0.001 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 003913 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN 483 (787)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~ 483 (787)
.+..+...+...|++++|...+++..+.. +.+..++..+...|...|++++|...+....+..+.+...|..+...|.+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 44444555555555555555555555432 22345555555555555555555555555555434455556666666666
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCC
Q 003913 484 AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGD 522 (787)
Q Consensus 484 ~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~ 522 (787)
.|++++|...|++..+.. +.+...+..+...+.+.|+
T Consensus 93 ~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELD--PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp TTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHhc
Confidence 666666666666655543 2345555555555554443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=7.9e-06 Score=71.62 Aligned_cols=114 Identities=10% Similarity=0.014 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003913 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLK 482 (787)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~ 482 (787)
..|..+...+...|++++|...+++..+.. +.+..++..+..+|...|++++|...+++..+..+.+..+|..+...|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 344444455555555555555555544422 2234445555555555555555555555555433444555555555555
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc
Q 003913 483 NAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS 519 (787)
Q Consensus 483 ~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~ 519 (787)
+.|++++|.+.|++..+.. +.+...+..+...+.+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLD--SSCKEAADGYQRCMMA 130 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHC--GGGTHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHH
Confidence 5555555555555555442 2233444444444433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.29 E-value=9.8e-06 Score=77.23 Aligned_cols=133 Identities=8% Similarity=-0.056 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCC----
Q 003913 403 PAYHKIIELLCKAEETELTESLMKEFVE----TGMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLE---KCRPN---- 470 (787)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~p~---- 470 (787)
.++..+...+...|++++|...+++..+ .+..| ...++..+...|...|++++|...+.+..+ ....+
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3444444455555555555555544443 11111 234555566666666666666666666554 12212
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 471 RTIYGIYLESLKNAGNIEKAEEIFNHMHSD----QTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
..++..+...|...|++++|...+++.... +....-..++..+...+...|++++|.+.+++..+
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345666777777777777777777766532 20001123456777778888888888888877764
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.28 E-value=1.3e-05 Score=83.57 Aligned_cols=97 Identities=16% Similarity=0.050 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 003913 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA 516 (787)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~ 516 (787)
..+|..+..+|.+.|++++|...|++.++..+.+..+|..+..+|...|++++|+..|++..+.. +.+...+..+...
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 46788888888888888888888888888667788899999999999999999999999988874 5577888888889
Q ss_pred HHcCCCHHHH-HHHHHHHHH
Q 003913 517 YLSSGDFVKA-EKIYDLMCL 535 (787)
Q Consensus 517 ~~~~g~~~~A-~~~~~~m~~ 535 (787)
+.+.|+.++| ...|+.|..
T Consensus 274 ~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 9999999888 557777764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.4e-05 Score=76.21 Aligned_cols=155 Identities=14% Similarity=0.102 Sum_probs=99.1
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCh
Q 003913 344 KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER----LGSA-SVPAYHKIIELLCKAEET 418 (787)
Q Consensus 344 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~ 418 (787)
..|++++|.++++.+.. .......++..+...|...|++++|...|++.... +..| ...++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45777777774444433 22234566777777777777777777777776541 1111 234566777777788888
Q ss_pred HHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCC----HHHHHHHHHHHHhcCC
Q 003913 419 ELTESLMKEFVET----GMKP--LMPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPN----RTIYGIYLESLKNAGN 486 (787)
Q Consensus 419 ~~A~~l~~~m~~~----g~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~----~~~~~~li~~~~~~g~ 486 (787)
++|...+++..+. +-.| ...++..+...+...|++++|...+++..+ ....+ ..++..+...|...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888877776652 1111 134577777788888888888888887764 11122 2345777888888899
Q ss_pred HHHHHHHHHHhhh
Q 003913 487 IEKAEEIFNHMHS 499 (787)
Q Consensus 487 ~~~A~~l~~~m~~ 499 (787)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9988888887764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00011 Score=74.83 Aligned_cols=167 Identities=8% Similarity=0.014 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--H
Q 003913 333 EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT-----PAFVYKMEAYAKIGEFMKSLEIFREMQERLG---SAS--V 402 (787)
Q Consensus 333 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~ 402 (787)
..+...+..+...|++++|.+.+.+..+....... ..+..+...|...|++++|+..|++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34556778889999999999999988876533211 2234466777888999999999999875321 122 4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CC-C
Q 003913 403 PAYHKIIELLCKAEETELTESLMKEFVET-GMKPL-----MPSYINLTNMYLNLGMHDRLHLAFSECLEKC-----RP-N 470 (787)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~-----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~p-~ 470 (787)
.+|+.+...|...|++++|...+++..+. ...|+ ..++..+...|.+.|++++|...+++.++-. .. -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 58899999999999999999999998731 11122 2689999999999999999999999987511 11 1
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHhhh
Q 003913 471 RTIYGIYLESLKNAGNIEKA-EEIFNHMHS 499 (787)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A-~~l~~~m~~ 499 (787)
..+|..+...|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 67899999999999999999 777777653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.28 E-value=4.2e-06 Score=84.92 Aligned_cols=194 Identities=9% Similarity=-0.042 Sum_probs=128.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003913 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410 (787)
Q Consensus 331 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (787)
+...+..+...+.+.|++++|...|++..+.... +...|..+..+|.+.|++++|...+++..+.. +-+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4556777778888899999999999988887643 67888888889999999999999998887653 236778888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 003913 411 LLCKAEETELTESLMKEFVETGMKPL-MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEK 489 (787)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~ 489 (787)
+|...|++++|...|++..+.. |+ ...+...+....+. ..+...........+.+......+... ..|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKRWNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 9999999999999998877632 11 00111111111111 111111111112345555555555333 2688999
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHH
Q 003913 490 AEEIFNHMHSDQTIGVNTRSCNIILSAYLSS-GDFVKAEKIYDLMCL 535 (787)
Q Consensus 490 A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~-g~~~~A~~~~~~m~~ 535 (787)
|++.+++..+.. +.+......+...+.+. +.+++|.++|+...+
T Consensus 154 A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGH--EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTT--SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccc--cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999888764 33344444444445554 668889999988765
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.2e-05 Score=70.39 Aligned_cols=99 Identities=12% Similarity=0.050 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHH
Q 003913 435 PLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIIL 514 (787)
Q Consensus 435 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li 514 (787)
.+...+..+...+...|++++|...|++..+..+.+..+|..+...|...|++++|++.|++..+.. +.+...|..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHHHHHH
Confidence 3567889999999999999999999999998667789999999999999999999999999999874 55789999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHH
Q 003913 515 SAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~ 535 (787)
..|.+.|++++|++.|++..+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999987
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.1e-05 Score=70.72 Aligned_cols=109 Identities=10% Similarity=0.085 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCCC----HHHHHH
Q 003913 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT-IGVN----TRSCNI 512 (787)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~~p~----~~t~~~ 512 (787)
.++..+...|.+.|++++|+..|++.++..+.+..+|+.+..+|.+.|++++|++.|++.++... ..++ ..+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45666777788888888888888887776667788888888888888888888888888766420 0111 246777
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHH
Q 003913 513 ILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKL 548 (787)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l 548 (787)
+..++...|++++|++.|++.++. .++|+....+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 888888888888888888888753 2667654433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=2.7e-05 Score=67.72 Aligned_cols=117 Identities=10% Similarity=-0.004 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003913 368 PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMY 447 (787)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 447 (787)
..+..+...+...|++++|...|++..... +.+...|..+...+...|++++|...+++..+.. +.+...+..+...|
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 445555666666666666666666665542 2245566666666666666666666666666542 33456666666677
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 003913 448 LNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGN 486 (787)
Q Consensus 448 ~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~ 486 (787)
...|++++|...|+...+..+.+...+..+...+.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 777777777777777666445566666666666666554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.25 E-value=6.2e-06 Score=76.96 Aligned_cols=118 Identities=10% Similarity=0.138 Sum_probs=58.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHhcCCH--HHHH
Q 003913 415 AEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLES-LKNAGNI--EKAE 491 (787)
Q Consensus 415 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~-~~~~g~~--~~A~ 491 (787)
.|++++|...+++..+.. +.+..++..+...|...|++++|...|+...+..+.+...|..+... |...|++ ++|.
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 344444444444444432 22344455555555555555555555555544333445555555555 4455555 5555
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 492 EIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 492 ~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
..|++..+.. +.+...|..+...|...|++++|...|++..+
T Consensus 102 ~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 102 AMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 5555555543 23445555555555555555555555555554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.24 E-value=2e-05 Score=71.30 Aligned_cols=97 Identities=9% Similarity=-0.060 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003913 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLK 482 (787)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~ 482 (787)
..+..+...+.+.|++++|...|++..+.. +-+...|..+..+|...|++++|...|++..+..+.+...|..+..+|.
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 345555566666666666666666666543 3345666666666666677777777666666644556667777777777
Q ss_pred hcCCHHHHHHHHHHhhhC
Q 003913 483 NAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 483 ~~g~~~~A~~l~~~m~~~ 500 (787)
+.|++++|...|++..+.
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777777764
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=4e-06 Score=75.77 Aligned_cols=98 Identities=12% Similarity=-0.006 Sum_probs=78.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHH
Q 003913 436 LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILS 515 (787)
Q Consensus 436 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~ 515 (787)
+...+..+...+.+.|++++|...|+...+..+.+...|..+..+|.+.|++++|+..|++..... +.+...|..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHH
Confidence 345666777778888888888888888877667788888888888888888888888888888764 446778888888
Q ss_pred HHHcCCCHHHHHHHHHHHHH
Q 003913 516 AYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~ 535 (787)
+|...|++++|+..|++.++
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888888875
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.23 E-value=8.6e-06 Score=75.99 Aligned_cols=121 Identities=9% Similarity=0.043 Sum_probs=79.5
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 003913 379 KIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM-YLNLGMH--DR 455 (787)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~-~~~~g~~--~~ 455 (787)
..|++++|...|++..+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+..+ |...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4566666666666665542 2255666666677777777777777777766643 3355666666666 6677776 77
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 456 LHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 456 a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
|...|+...+..+.+...|..+...|...|++++|...|++..+..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 7777777776555667777777888888888888888888877754
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.23 E-value=1e-06 Score=89.60 Aligned_cols=98 Identities=7% Similarity=-0.076 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHH
Q 003913 436 LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILS 515 (787)
Q Consensus 436 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~ 515 (787)
+...+..+...+.+.|++++|...|...++..+.+...|..+...|.+.|++++|+..+++..+.. +.+...|..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 345666677777777777777777777776556677788888888888888888888888877764 456777788888
Q ss_pred HHHcCCCHHHHHHHHHHHHH
Q 003913 516 AYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~ 535 (787)
+|...|++++|+..|++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888887775
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.23 E-value=3e-05 Score=80.84 Aligned_cols=146 Identities=9% Similarity=0.002 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL 411 (787)
Q Consensus 332 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 411 (787)
...+..+...|.+.|++++|...|++.++........ ..+.+.++ ... ....|..+..+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-------------~~~~~~~~----~~~----~~~~~~nla~~ 205 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF-------------SNEEAQKA----QAL----RLASHLNLAMC 205 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC-------------CSHHHHHH----HHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC-------------ChHHHHHH----HHH----HHHHHHHHHHH
Confidence 4556666666777777777777777666654321100 00000000 000 13456666666
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH-
Q 003913 412 LCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKA- 490 (787)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A- 490 (787)
|.+.|++++|...+++.++.. +.+..+|..+..+|...|++++|...|++.++..+.+..++..+...+.+.|+.++|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777766643 335667777777777777777777777777765566677777777777777777777
Q ss_pred HHHHHHhhh
Q 003913 491 EEIFNHMHS 499 (787)
Q Consensus 491 ~~l~~~m~~ 499 (787)
..+|+.|..
T Consensus 285 ~~~~~~~~~ 293 (336)
T 1p5q_A 285 KKLYANMFE 293 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 445555543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00095 Score=68.25 Aligned_cols=191 Identities=7% Similarity=-0.015 Sum_probs=144.4
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hHHHHHH
Q 003913 348 VEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE--FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEE-TELTESL 424 (787)
Q Consensus 348 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~-~~~A~~l 424 (787)
++++..+++.+....++ +..+|+.-...+.+.|+ +++++.+++++.+...+ |..+|+.-.-.+...|. .+++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 67888888888887755 77888877777777774 78899999998887544 78888887777778887 5888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc------
Q 003913 425 MKEFVETGMKPLMPSYINLTNMYLNL--------------GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA------ 484 (787)
Q Consensus 425 ~~~m~~~g~~p~~~t~~~li~~~~~~--------------g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~------ 484 (787)
+.++++.. +-|..+|+.....+.+. +.++++.+.+...+...+-|..+|+-+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 88888865 44677777766666655 4578899999998887788999998777666665
Q ss_pred -----CCHHHHHHHHHHhhhCCCCCCCHHHHHHHHH-----HHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHH
Q 003913 485 -----GNIEKAEEIFNHMHSDQTIGVNTRSCNIILS-----AYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLD 549 (787)
Q Consensus 485 -----g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~-----~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~ 549 (787)
+.++++++.++++.+.. ||. .|+.+-. +....|..+++...+.++++ +||.-.++|.
T Consensus 247 ~~~~~~~l~~el~~~~elle~~---pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~----~Dp~r~~~y~ 313 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELE---PEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA----VDPMRAAYLD 313 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC---TTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH----HCGGGHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhC---ccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH----hCcchhhHHH
Confidence 56899999999999864 553 3433222 22246888899999999997 8887544443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.1e-05 Score=80.26 Aligned_cols=187 Identities=7% Similarity=-0.093 Sum_probs=118.3
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHcCCCCC---------------
Q 003913 344 KEGDVEDAEKTWLRLLESDNGIPTPAFVYK-------MEAYAKIGEFMKSLEIFREMQERLGSAS--------------- 401 (787)
Q Consensus 344 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------- 401 (787)
..++...|.+.|.++.+..+. ....|+.+ ...+...++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 456777777777777766544 45666666 4555555555555555544333 1111
Q ss_pred -------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--HH
Q 003913 402 -------VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN--RT 472 (787)
Q Consensus 402 -------~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~--~~ 472 (787)
...+-.....+...|++++|.++|+.+...+ |+......+...|.+.+++++|+..|+...+...|. ..
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1123345566777778888888777766533 444356666667778888888888887554311111 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 003913 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN--TRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (787)
.+..+..++.+.|++++|+..|++..... ..|. ...+.....++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~-~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSP-AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTST-TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCC-CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 67777788888888888888888877432 3243 345666777788888888888888888863
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=6.5e-05 Score=63.82 Aligned_cols=95 Identities=9% Similarity=-0.022 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 003913 405 YHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA 484 (787)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~ 484 (787)
+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|...++...+..+.+...|..+...|...
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3344444444444444444444444322 223444444444444444444444444444443333444455555555555
Q ss_pred CCHHHHHHHHHHhhhC
Q 003913 485 GNIEKAEEIFNHMHSD 500 (787)
Q Consensus 485 g~~~~A~~l~~~m~~~ 500 (787)
|++++|.+.|++..+.
T Consensus 86 ~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHc
Confidence 5555555555555443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.18 E-value=0.0054 Score=67.15 Aligned_cols=203 Identities=11% Similarity=0.038 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003913 277 QQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWL 356 (787)
Q Consensus 277 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 356 (787)
+.+..+|++++...... .. .|+..+..+.+.|+.++|..++++.... |....... .|+.....++. ++
T Consensus 196 ~Rv~~~ye~al~~~p~~-~~--lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~ 263 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYA-EE--VYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YG 263 (493)
T ss_dssp HHHHHHHHHHHHHTTTC-HH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HH
T ss_pred HHHHHHHHHHHHcCCCC-HH--HHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HH
Confidence 34556777776654322 22 2333335567789999999999999987 54332211 23332222222 22
Q ss_pred HHHhCC---------C---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCChHHHH
Q 003913 357 RLLESD---------N---GIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYH--KIIELLCKAEETELTE 422 (787)
Q Consensus 357 ~m~~~~---------~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~li~~~~~~g~~~~A~ 422 (787)
.+.+.- . ......|...+..+.+.+.++.|..+|++. .. ...+...|. +.+...+ .++.+.|.
T Consensus 264 ~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~-~~d~~~ar 340 (493)
T 2uy1_A 264 DLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYA-TGSRATPY 340 (493)
T ss_dssp HHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHH-HCCSHHHH
T ss_pred HHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHH-CCChHHHH
Confidence 322210 0 001245666777777788999999999999 32 122444443 3333322 33699999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 423 SLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 423 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
.+|+...+.- .-+...+...++...+.|+.+.|..+|+.+. .....|...+..-...|+.+.+.++++++..
T Consensus 341 ~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 341 NIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999998853 2234556667787888999999999999973 3678899999888889999999999988874
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=2.7e-06 Score=81.20 Aligned_cols=130 Identities=15% Similarity=-0.049 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003913 404 AYHKIIELLCKAEETELTESLMKEFVETGM-KP--------------LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCR 468 (787)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p--------------~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 468 (787)
.+..+...+...|++++|...|++.++..- .| ...++..+..+|.+.|++++|...++..++..+
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 344444555555555555555555554210 01 025677777788888888888888888777556
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHH-HHHHHHHH
Q 003913 469 PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAE-KIYDLMCL 535 (787)
Q Consensus 469 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~-~~~~~m~~ 535 (787)
.+..+|..+..+|...|++++|++.|++..+.. +-+...+..+...+...++.+++. ..|..|..
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 677888888888888888888888888887763 446677777777777777666666 45555543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=9e-05 Score=76.20 Aligned_cols=151 Identities=11% Similarity=-0.043 Sum_probs=107.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-CHHHHH
Q 003913 381 GEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAE-ETELTESLMKEFVETGMKPLMPSYINLTNMYLNL-G-MHDRLH 457 (787)
Q Consensus 381 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~-g-~~~~a~ 457 (787)
+..++|++++++++..+.. +..+|+.--..+...| .+++++.+++.++... +-+..+|+.-...+.+. + ++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 3445666677666665322 4455666666666666 4777777777776643 33455666666666555 5 677888
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCC-------
Q 003913 458 LAFSECLEKCRPNRTIYGIYLESLKNAGNIE--------KAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGD------- 522 (787)
Q Consensus 458 ~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~------- 522 (787)
.+++.+++..+.|..+|+.-.-.+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.++
T Consensus 146 ~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccchHH
Confidence 8888888767778888887777766666665 8999999999886 5688899988888888876
Q ss_pred HHHHHHHHHHHHH
Q 003913 523 FVKAEKIYDLMCL 535 (787)
Q Consensus 523 ~~~A~~~~~~m~~ 535 (787)
++++++.+++++.
T Consensus 224 ~~eELe~~~~aI~ 236 (349)
T 3q7a_A 224 LQDELIYILKSIH 236 (349)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7889999998887
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.15 E-value=5.8e-05 Score=75.01 Aligned_cols=196 Identities=10% Similarity=-0.018 Sum_probs=143.6
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCC-HHHHHHH-------HHHHHhcCChHHHHHHHHHHHh------------CCCC----
Q 003913 309 DNIDKERISLLKKEMQQAGFEEG-KEVLLSV-------LRVCAKEGDVEDAEKTWLRLLE------------SDNG---- 364 (787)
Q Consensus 309 ~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~l-------i~~~~~~g~~~~A~~~~~~m~~------------~~~~---- 364 (787)
..++...|.+.|.+..+. .|+ ...|..+ ...+...++..++...+..-.+ .|+-
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 468899999999999885 454 4567766 4566666666666655555444 1210
Q ss_pred ----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HH
Q 003913 365 ----IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL--MP 438 (787)
Q Consensus 365 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ 438 (787)
--...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 002344556788999999999999999887653 544466667778999999999999998554421 111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHH
Q 003913 439 SYINLTNMYLNLGMHDRLHLAFSECLEKCR-PN--RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNI 512 (787)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~-p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ 512 (787)
.+..+..++.+.|++++|+..|++...+.. |. ......+..++.+.|+.++|..+|+++.... |+...+..
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~---P~~~~~~a 246 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH---PEPKVAAA 246 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---CCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHH
Confidence 788899999999999999999999987443 53 4577888899999999999999999999964 66444333
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.15 E-value=3.4e-05 Score=68.15 Aligned_cols=99 Identities=8% Similarity=-0.049 Sum_probs=79.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHH
Q 003913 435 PLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIIL 514 (787)
Q Consensus 435 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li 514 (787)
.+...+..+...+...|++++|...|...++..+.+...|..+...|...|++++|...|++..+.. +.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHHH
Confidence 3567777778888888888888888888777556678888888888888888888888888888764 45677888888
Q ss_pred HHHHcCCCHHHHHHHHHHHHH
Q 003913 515 SAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.+|...|++++|+..|++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 888888888888888888876
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=1.2e-05 Score=72.70 Aligned_cols=97 Identities=10% Similarity=-0.039 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003913 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLK 482 (787)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~ 482 (787)
..+..+...+...|++++|...|++..... +.+...+..+..+|...|++++|...|+..++..+.+..+|..+..+|.
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 345555566666666666666666666543 3355666666666666777777777776666644556667777777777
Q ss_pred hcCCHHHHHHHHHHhhhC
Q 003913 483 NAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 483 ~~g~~~~A~~l~~~m~~~ 500 (787)
..|++++|.+.|++..+.
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777776664
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=4.9e-06 Score=79.37 Aligned_cols=157 Identities=9% Similarity=0.028 Sum_probs=102.5
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---------------HHHHHH
Q 003913 343 AKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS---------------VPAYHK 407 (787)
Q Consensus 343 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---------------~~t~~~ 407 (787)
...|+++.+.+.|+.-.+... .....+..+...+.+.|++++|...|++.......-. ...|..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKV-QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp -------CCCSGGGCCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 344555555555542221111 0234566677777788888888888888776421111 267888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 003913 408 IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI 487 (787)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~ 487 (787)
+..+|...|++++|...+++.++.. +.+..++..+..+|...|++++|...|+...+..+.+..++..+...+...++.
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999988864 456788999999999999999999999998886677888899998888888888
Q ss_pred HHHH-HHHHHhhhCC
Q 003913 488 EKAE-EIFNHMHSDQ 501 (787)
Q Consensus 488 ~~A~-~l~~~m~~~~ 501 (787)
+++. ..|..|...+
T Consensus 173 ~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 173 RKKDKLTFGGMFDKG 187 (198)
T ss_dssp HC-------------
T ss_pred HHHHHHHHHHHhccc
Confidence 7777 6666665544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.13 E-value=4.6e-05 Score=66.31 Aligned_cols=97 Identities=11% Similarity=0.020 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 003913 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA 516 (787)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~ 516 (787)
...+..+...+.+.|++++|...|.+.++..+.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence 34566667777788888888888888777666678888888888888888888888888888764 4567788888888
Q ss_pred HHcCCCHHHHHHHHHHHHH
Q 003913 517 YLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~ 535 (787)
|...|++++|+..|++..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 8888888888888888876
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.12 E-value=2.2e-05 Score=70.23 Aligned_cols=97 Identities=13% Similarity=-0.049 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 003913 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA 516 (787)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~ 516 (787)
...+..+...+.+.|++++|...|+...+..+.+...|..+..+|.+.|++++|+..|++..... +.+...|..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHH
Confidence 34555666677777888888888877777556677788888888888888888888888887764 4566777778888
Q ss_pred HHcCCCHHHHHHHHHHHHH
Q 003913 517 YLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~ 535 (787)
|...|++++|++.|++.++
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 8888888888888887775
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.10 E-value=4.9e-05 Score=66.07 Aligned_cols=97 Identities=14% Similarity=0.074 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-------HHHH
Q 003913 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN-------TRSC 510 (787)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~-------~~t~ 510 (787)
..+..+...+...|++++|...|....+..+.+..++..+...|...|++++|...|++..... +.+ ..+|
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG--RENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--cccchhHHHHHHHH
Confidence 3455566666666666666666666666445566667777777777777777777777666542 112 5667
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHc
Q 003913 511 NIILSAYLSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (787)
..+...|.+.|++++|.+.|++..+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77777777777777777777777653
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00011 Score=63.86 Aligned_cols=97 Identities=9% Similarity=-0.047 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003913 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLK 482 (787)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~ 482 (787)
..|..+...+.+.|++++|...|++.++.. +.+...|..+..+|.+.|++++|...|++.++..+.+..+|..+..+|.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345555566666666666666666666543 3345666666777777777777777777766655556677777777777
Q ss_pred hcCCHHHHHHHHHHhhhC
Q 003913 483 NAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 483 ~~g~~~~A~~l~~~m~~~ 500 (787)
..|++++|.+.|++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 777777777777776653
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.06 E-value=4.7e-05 Score=69.89 Aligned_cols=97 Identities=12% Similarity=0.029 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 003913 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA 516 (787)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~ 516 (787)
...+..+...|.+.|++++|...|++.++..+.+...|..+...|.+.|++++|+..|++..+.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 34555566666666666666666666665445566666666666666666666666666666653 3456666666666
Q ss_pred HHcCCCHHHHHHHHHHHHH
Q 003913 517 YLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~ 535 (787)
|.+.|++++|+..|++.++
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 6666777777766666665
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.05 E-value=2.9e-05 Score=65.40 Aligned_cols=96 Identities=16% Similarity=0.026 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--CHHHHHHHHH
Q 003913 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGV--NTRSCNIILS 515 (787)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p--~~~t~~~li~ 515 (787)
..+..+...+...|++++|...|+...+..+.+..+|..+...|...|++++|.+.|++..+.. +. +...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHHHHH
Confidence 3445555566666666666666666665445566666666667777777777777777766653 33 4666666666
Q ss_pred HHHcC-CCHHHHHHHHHHHHH
Q 003913 516 AYLSS-GDFVKAEKIYDLMCL 535 (787)
Q Consensus 516 ~~~~~-g~~~~A~~~~~~m~~ 535 (787)
.|.+. |++++|++.+++...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 77777 777777777776665
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=3e-05 Score=67.11 Aligned_cols=94 Identities=12% Similarity=-0.049 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc
Q 003913 440 YINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS 519 (787)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~ 519 (787)
+..+...+.+.|++++|...|+..++..+.+...|..+..++.+.|++++|+..|++..+.. +-+...|..+..+|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 34455566677777777777777766556677777777777777777777777777777754 3456677777777777
Q ss_pred CCCHHHHHHHHHHHHH
Q 003913 520 SGDFVKAEKIYDLMCL 535 (787)
Q Consensus 520 ~g~~~~A~~~~~~m~~ 535 (787)
.|++++|+..|++.++
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777777764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0002 Score=60.70 Aligned_cols=110 Identities=11% Similarity=0.008 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 367 TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM 446 (787)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 446 (787)
...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3445556666666666666666666666542 2255566666666666677777777766666643 2345666667777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 003913 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYL 478 (787)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li 478 (787)
|...|++++|...++...+..+.+...+..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 77777777777777776654444555554443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00074 Score=69.03 Aligned_cols=192 Identities=9% Similarity=0.002 Sum_probs=152.6
Q ss_pred HhcCChH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 343 AKEGDVE-DAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE----------FMKSLEIFREMQERLGSASVPAYHKIIEL 411 (787)
Q Consensus 343 ~~~g~~~-~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 411 (787)
.+.|.++ +|.++++.++..++. +..+|+.--..+...|. +++++.+++.+.....+ +..+|+.-.-.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3556655 789999999988765 56677754333333332 68899999999887444 88899888888
Q ss_pred HHhcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc----
Q 003913 412 LCKAEE--TELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM-HDRLHLAFSECLEKCRPNRTIYGIYLESLKNA---- 484 (787)
Q Consensus 412 ~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~-~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~---- 484 (787)
+...+. +++++.+++++.+.. +-|..+|+.-...+.+.|. ++++.+.+..+++..+-|..+|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 888884 899999999999865 5578888888888888898 69999999999997788999999988877766
Q ss_pred ----------CCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHcCCccCHH
Q 003913 485 ----------GNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSS-----------GDFVKAEKIYDLMCLKKYEIESA 543 (787)
Q Consensus 485 ----------g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~~~p~ 543 (787)
+.++++++.+++.+... |-|...|+-+-..+.+. +.++++++.++++.+ ..|+
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle----~~pd 270 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE----LEPE 270 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH----HCTT
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh----hCcc
Confidence 56899999999999875 66888998776666665 468899999999987 5565
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00016 Score=64.53 Aligned_cols=97 Identities=15% Similarity=0.008 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 003913 402 VPAYHKIIELLCKAEETELTESLMKEFVETGMKPL----MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIY 477 (787)
Q Consensus 402 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~l 477 (787)
...+..+...+...|++++|...|++..+. .|+ ..++..+..+|...|++++|...++...+..+.+...|..+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 344444455555555555555555555442 233 34455555555555555555555555554334455555555
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhC
Q 003913 478 LESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
...|...|++++|...|++..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 56666666666666666665554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.02 E-value=8.7e-05 Score=68.04 Aligned_cols=99 Identities=8% Similarity=-0.052 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 003913 402 VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESL 481 (787)
Q Consensus 402 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~ 481 (787)
...|..+...+...|++++|...|++.++.. +-+...|..+..+|.+.|++++|+..|+..++..+.+...|..+...|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4456666777777777777777777777643 335777788888888888888888888888775566788888888888
Q ss_pred HhcCCHHHHHHHHHHhhhCC
Q 003913 482 KNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 482 ~~~g~~~~A~~l~~~m~~~~ 501 (787)
.+.|++++|.+.|++..+..
T Consensus 90 ~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC
Confidence 88888888888888887753
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.00 E-value=4.9e-05 Score=66.07 Aligned_cols=107 Identities=11% Similarity=0.068 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC----HHHHHH
Q 003913 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKC---RPN----RTIYGI 476 (787)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~---~p~----~~~~~~ 476 (787)
.|..+...+...|++++|...+++..+.. +.+..++..+...|...|++++|...+....+.. .++ ..+|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34445555555555555555555555432 2345555556666666666666666666655411 222 556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHH
Q 003913 477 YLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIIL 514 (787)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li 514 (787)
+...|.+.|++++|.+.|++..+.. |+...+..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~l~ 119 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH---RTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC---CCHHHHHHHH
Confidence 7777777777777777777776643 4554444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.00 E-value=9.4e-05 Score=65.18 Aligned_cols=99 Identities=10% Similarity=-0.024 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 003913 401 SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLES 480 (787)
Q Consensus 401 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~ 480 (787)
+...|..+...+...|++++|...|++.++.. +.+...+..+..+|...|++++|...++..++..+.+...|..+...
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 44555666666666666666666666665543 33456666666666666666666666666666445566677777777
Q ss_pred HHhcCCHHHHHHHHHHhhhC
Q 003913 481 LKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 481 ~~~~g~~~~A~~l~~~m~~~ 500 (787)
|...|++++|+..|++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 77777777777777766653
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.97 E-value=6.4e-05 Score=63.23 Aligned_cols=99 Identities=11% Similarity=0.073 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHH
Q 003913 402 VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP--NRTIYGIYLE 479 (787)
Q Consensus 402 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p--~~~~~~~li~ 479 (787)
...|..+...+...|++++|...+++..+.. +.+..++..+..+|...|++++|...|++..+..+. +..+|..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3445556666677777777777777766643 335666777777777777777777777777765455 6777888888
Q ss_pred HHHhc-CCHHHHHHHHHHhhhCC
Q 003913 480 SLKNA-GNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 480 ~~~~~-g~~~~A~~l~~~m~~~~ 501 (787)
.|.+. |++++|.+.|++.....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 88888 88888888888877764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0001 Score=65.67 Aligned_cols=96 Identities=10% Similarity=-0.010 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 003913 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN 483 (787)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~ 483 (787)
.+..+...+.+.|++++|...|++..... +.+...|..+..+|.+.|++++|...|+..++..+.+...|..+..+|..
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 34445555566666666666666666543 33455666666666666666666666666666445566666667777777
Q ss_pred cCCHHHHHHHHHHhhhC
Q 003913 484 AGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 484 ~g~~~~A~~l~~~m~~~ 500 (787)
.|++++|.+.|++..+.
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777766654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00032 Score=61.15 Aligned_cols=103 Identities=12% Similarity=0.091 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCC----HHHHHH
Q 003913 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE---KCRPN----RTIYGI 476 (787)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~p~----~~~~~~ 476 (787)
++..+...+.+.|++++|+..|++.++.. +-+..+|..+..+|.+.|++++|+..|++.++ ...++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34455555556666666666666555532 22355566666666666666666666666554 11221 235666
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHH
Q 003913 477 YLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSC 510 (787)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~ 510 (787)
+...|...|++++|++.|++.... .||..+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~---~~~~~~~ 119 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE---FRDPELV 119 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---SCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh---CcCHHHH
Confidence 677777777777777777777664 3555443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00044 Score=74.62 Aligned_cols=196 Identities=14% Similarity=0.067 Sum_probs=137.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCH
Q 003913 340 RVCAKEGDVEDAEKTWLRLLESDNGIP----------------TPAFVYKMEAYAKIGEFMKSLEIFREMQERL-GSASV 402 (787)
Q Consensus 340 ~~~~~~g~~~~A~~~~~~m~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~ 402 (787)
..+.+.|++++|.+.|..+.+...... ..++..|...|.+.|++++|.+.+..+...- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345567888888888877776543211 1246678899999999999999998875421 11122
Q ss_pred ----HHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cC--C
Q 003913 403 ----PAYHKIIELLCKAEETELTESLMKEFVE----TGMKPL-MPSYINLTNMYLNLGMHDRLHLAFSECLE---KC--R 468 (787)
Q Consensus 403 ----~t~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~--~ 468 (787)
...+.+-..+...|..++|..++..... .+..+. ..++..|...|...|++++|..++..... +. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1233333444456889999998888764 233333 56788899999999999999999998775 11 1
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-C--CCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 469 P-NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT-I--GVN--TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 469 p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~--~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+ ...+|..++..|...|++++|..++++...... + +|. ...+..+...+...|++++|...|.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 256888999999999999999999988754210 1 111 35677777888899999999999888864
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00014 Score=62.86 Aligned_cols=95 Identities=7% Similarity=-0.110 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 003913 405 YHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA 484 (787)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~ 484 (787)
+..+...+.+.|++++|...+++.++.. +.+...+..+..++...|++++|+..|++.++..+.+...|..+...|.+.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3445566677777777777777777643 335667777777777777777777777777765566777788888888888
Q ss_pred CCHHHHHHHHHHhhhC
Q 003913 485 GNIEKAEEIFNHMHSD 500 (787)
Q Consensus 485 g~~~~A~~l~~~m~~~ 500 (787)
|++++|+..|++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 8888888888877764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00043 Score=61.56 Aligned_cols=107 Identities=13% Similarity=0.122 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003913 367 TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS----VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYIN 442 (787)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 442 (787)
...+..+...+.+.|++++|...|++..+. .|+ ...|..+...|...|++++|...+++..+.. +.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 334444444445555555555555544432 233 3444445555555555555555555555432 223445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 003913 443 LTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGI 476 (787)
Q Consensus 443 li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~ 476 (787)
+..+|...|++++|...|++..+..+.+...+..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 138 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEA 138 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 5555555555555555555555433334444433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0001 Score=66.61 Aligned_cols=97 Identities=18% Similarity=0.102 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCCHH
Q 003913 439 SYINLTNMYLNLGMHDRLHLAFSECLEK--CRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHSD----QTIGVNTR 508 (787)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~~p~~~ 508 (787)
++..+...|...|++++|...+++..+. ...+ ..++..+...|...|++++|.+.+++..+. +.......
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4555555555666666666666555431 1111 345666677777777777777777766542 10011235
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 509 SCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 509 t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
++..+...|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677777888888888888888887764
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00018 Score=78.44 Aligned_cols=146 Identities=16% Similarity=0.143 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 367 TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM 446 (787)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 446 (787)
...|..+...|.+.|++++|...|++..+.. |+...+ .-+...+ ...+ ...+|..+..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~-~~~~-------~~~~~~nla~~ 326 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL-----------SEKESKA-SESF-------LLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC-----------CHHHHHH-HHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC-----------ChHHHHH-HHHH-------HHHHHHHHHHH
Confidence 4567777788888888888888888776542 111000 0000000 0000 14567778888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 003913 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKA 526 (787)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A 526 (787)
|.+.|++++|+..|++.++..+.+..+|..+..+|...|++++|+..|++..+.. +-+...|..+..++.+.|+.++|
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888887666778888888888888888888888888888764 44566777888888888887776
Q ss_pred H-HHHHHHHH
Q 003913 527 E-KIYDLMCL 535 (787)
Q Consensus 527 ~-~~~~~m~~ 535 (787)
. ..+..|..
T Consensus 405 ~~~~~~~~f~ 414 (457)
T 1kt0_A 405 DRRIYANMFK 414 (457)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHh
Confidence 5 34555553
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00019 Score=64.41 Aligned_cols=101 Identities=10% Similarity=-0.026 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CC
Q 003913 439 SYINLTNMYLNLGMHDRLHLAFSECLEKCRP-------NR-----TIYGIYLESLKNAGNIEKAEEIFNHMHSD----QT 502 (787)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p-------~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~ 502 (787)
.+......+.+.|++++|...|++.++-.+. +. ..|+.+..++.+.|++++|+..+++.++. +.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3445556666677777777777776652222 33 38888888999999999999998888875 11
Q ss_pred CCCC-HHHH----HHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHH
Q 003913 503 IGVN-TRSC----NIILSAYLSSGDFVKAEKIYDLMCLKKYEIESA 543 (787)
Q Consensus 503 ~~p~-~~t~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~ 543 (787)
+.|+ ...| .....++...|++++|+..|++.++ ++|+
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle----l~p~ 134 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE----MIEE 134 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh----cCCC
Confidence 1354 5688 8999999999999999999999987 6665
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00014 Score=65.69 Aligned_cols=131 Identities=14% Similarity=-0.014 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HH
Q 003913 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGS-AS----VPAYHKIIELLCKAEETELTESLMKEFVETGM-KPL----MP 438 (787)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~ 438 (787)
++..+...|...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+..- .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4445555555666666666666554432100 11 12455566666666666666666666554210 011 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 439 SYINLTNMYLNLGMHDRLHLAFSECLEK--CRP----NRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
++..+...|...|++++|...+++..+. ... ...++..+...|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5666777777778888887777776641 111 134677778888888999999888887665
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00021 Score=65.27 Aligned_cols=68 Identities=19% Similarity=0.189 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHH
Q 003913 470 NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESA 543 (787)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~ 543 (787)
+..+|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|++.++ ++|+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~----l~p~ 129 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR----NHPA 129 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCGG
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh----cCCC
Confidence 45678888888888888888888888888864 55678888888888888888888888888886 5555
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00029 Score=76.77 Aligned_cols=147 Identities=12% Similarity=0.012 Sum_probs=94.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003913 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410 (787)
Q Consensus 331 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (787)
....+..+...|.+.|++++|...|++.++....... + .-+... ++... ....|..+..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~----~~~~~----~~~~~~nla~ 325 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG--L-----------SEKESK----ASESF----LLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--C-----------CHHHHH----HHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--C-----------ChHHHH----HHHHH----HHHHHHHHHH
Confidence 3567888999999999999999999998875432110 0 000000 11111 2345666667
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 003913 411 LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKA 490 (787)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A 490 (787)
+|.+.|++++|+..+++.++.. +.+..+|..+..+|...|++++|...|++.++..+.+..+|..+...+.+.|+.++|
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777643 335677777777777778888888877777765555667777788888877777766
Q ss_pred H-HHHHHhhh
Q 003913 491 E-EIFNHMHS 499 (787)
Q Consensus 491 ~-~l~~~m~~ 499 (787)
. .++..|..
T Consensus 405 ~~~~~~~~f~ 414 (457)
T 1kt0_A 405 DRRIYANMFK 414 (457)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHh
Confidence 5 34555544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00073 Score=72.85 Aligned_cols=193 Identities=7% Similarity=-0.024 Sum_probs=137.0
Q ss_pred hccCCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCH--
Q 003913 307 YQDNIDKERISLLKKEMQQAGFEEG----------------KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG-IPT-- 367 (787)
Q Consensus 307 ~~~~g~~~~a~~l~~~m~~~g~~p~----------------~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~-- 367 (787)
+.+.|++++|.+.|....+..-... ...+..+...|.+.|++++|.+.+..+.+.-.. ++.
T Consensus 14 l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 93 (434)
T 4b4t_Q 14 LVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKT 93 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHH
Confidence 3445677777777777765422110 124678899999999999999999887653211 111
Q ss_pred --HHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC--C-
Q 003913 368 --PAFVYKMEAYAKIGEFMKSLEIFREMQE----RLGSAS-VPAYHKIIELLCKAEETELTESLMKEFVET--GMK--P- 435 (787)
Q Consensus 368 --~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~--p- 435 (787)
.+.+.+-..+...|+.++|..++++... .+..+. ..++..+...|...|++++|..+++++... +.. +
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence 1233344444557899999999988753 233333 357788999999999999999999988762 211 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 436 LMPSYINLTNMYLNLGMHDRLHLAFSECLE---KCRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 436 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
...++..++..|...|++++|..+++.... ....+ ...+..+...+...|++++|...|.+..+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 256889999999999999999999998875 22222 35677778888889999999998887754
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00028 Score=61.25 Aligned_cols=92 Identities=17% Similarity=0.068 Sum_probs=57.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC---HHHHHHHHH
Q 003913 442 NLTNMYLNLGMHDRLHLAFSECLEKCRPNR---TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN---TRSCNIILS 515 (787)
Q Consensus 442 ~li~~~~~~g~~~~a~~~~~~m~~~~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~---~~t~~~li~ 515 (787)
.+...+...|++++|...|+.+.+..+.+. ..+..+...|.+.|++++|...|++..+.. +.+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHH
Confidence 344555566666666666666655333333 466666667777777777777777766653 223 455666666
Q ss_pred HHHcCCCHHHHHHHHHHHHH
Q 003913 516 AYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~ 535 (787)
+|.+.|++++|...|++..+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777765
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00094 Score=57.81 Aligned_cols=92 Identities=11% Similarity=0.026 Sum_probs=53.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHH
Q 003913 408 IIELLCKAEETELTESLMKEFVETGMKPLM---PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN---RTIYGIYLESL 481 (787)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~---~~~~~~li~~~ 481 (787)
+...+...|++++|...|+++.+.. +.+. ..+..+..+|.+.|++++|...|+...+..+.+ ..++..+...|
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3444555556666666665555532 1111 355555666666666666666666665533333 55566666667
Q ss_pred HhcCCHHHHHHHHHHhhhC
Q 003913 482 KNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 482 ~~~g~~~~A~~l~~~m~~~ 500 (787)
.+.|++++|...|+++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 7777777777777776665
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.72 E-value=4.6e-05 Score=65.38 Aligned_cols=85 Identities=15% Similarity=0.282 Sum_probs=42.3
Q ss_pred CChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003913 416 EETELTESLMKEFVETGM--KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEI 493 (787)
Q Consensus 416 g~~~~A~~l~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 493 (787)
|++++|...|++.++.+. +.+..++..+..+|...|++++|...|++.++..+-+..++..+..+|.+.|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 445555555555554321 112344555555555555555555555555554444455555555555555555555555
Q ss_pred HHHhhhC
Q 003913 494 FNHMHSD 500 (787)
Q Consensus 494 ~~~m~~~ 500 (787)
|++....
T Consensus 84 ~~~al~~ 90 (117)
T 3k9i_A 84 LLKIIAE 90 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.72 E-value=7e-05 Score=82.08 Aligned_cols=117 Identities=13% Similarity=-0.009 Sum_probs=62.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003913 412 LCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAE 491 (787)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~ 491 (787)
+.+.|++++|.+.+++.++.. +.+..+|..+..+|.+.|++++|...+++.++..+.+..+|..+..+|.+.|++++|+
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 444555555555555555532 2235555666666666666666666666665544455666666666666666666666
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHH--HHcCCCHHHHHHHHH
Q 003913 492 EIFNHMHSDQTIGVNTRSCNIILSA--YLSSGDFVKAEKIYD 531 (787)
Q Consensus 492 ~l~~~m~~~~~~~p~~~t~~~li~~--~~~~g~~~~A~~~~~ 531 (787)
+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 95 ~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666665543 2233344444333 555666666666665
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0018 Score=72.30 Aligned_cols=153 Identities=9% Similarity=-0.026 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-
Q 003913 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEE----------TELTESLMKEFVETGMKPLMPSYINLTNMYLNLG- 451 (787)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g- 451 (787)
-++|++.++++...+.. +...|+.--.++...|+ ++++++.++++.+.. +-+..+|+.-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 45677777777766332 45566666666666666 788888888888754 346778888888888888
Q ss_pred -CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcC---------
Q 003913 452 -MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG-NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSS--------- 520 (787)
Q Consensus 452 -~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~--------- 520 (787)
+++++.+.++++.+..+.|..+|+.-...+.+.| .++++++.++++++.. +-|...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCCccHHHHHHHHHHhhccccccccc
Confidence 6799999999998877889999999888888888 8999999999999886 56888998888777663
Q ss_pred -----CCHHHHHHHHHHHHHcCCccCHH
Q 003913 521 -----GDFVKAEKIYDLMCLKKYEIESA 543 (787)
Q Consensus 521 -----g~~~~A~~~~~~m~~~g~~~~p~ 543 (787)
+.+++|++++++.+. .+|+
T Consensus 201 ~~~~~~~~~eel~~~~~ai~----~~P~ 224 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFF----TDPN 224 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHH----HCSS
T ss_pred ccccHHHHHHHHHHHHHHHh----hCCC
Confidence 567889999988886 5555
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0003 Score=74.12 Aligned_cols=139 Identities=10% Similarity=0.037 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 003913 367 TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKP-LMPSYINLTN 445 (787)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~ 445 (787)
...+..+...|.+.|++++|++.|++..+.- ++. ......+++.. ..| +..+|..+..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~~---------~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGAK---------LQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHGG---------GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHHH---------HHHHHHHHHHHHHH
Confidence 4567778888888888888888888776520 000 00001111100 111 3456777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHH
Q 003913 446 MYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVK 525 (787)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~ 525 (787)
+|.+.|++++|+..+++.++..+.+..+|..+..+|.+.|++++|++.|++..+.. +.+...+..+...+.+.++.++
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888777556677788888888888888888888888887763 3456667677767666666665
Q ss_pred HHH
Q 003913 526 AEK 528 (787)
Q Consensus 526 A~~ 528 (787)
+.+
T Consensus 360 a~k 362 (370)
T 1ihg_A 360 KEK 362 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00012 Score=76.32 Aligned_cols=148 Identities=9% Similarity=-0.003 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 367 TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM 446 (787)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 446 (787)
...+..+...|.+.|++++|...|++.... .|+... +...++.+++...+. ..+|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 567778888999999999999999998765 244332 222333444332221 1378889999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHH-HHcCCCHHH
Q 003913 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA-YLSSGDFVK 525 (787)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~-~~~~g~~~~ 525 (787)
|.+.|++++|...++..++..+.+..+|..+..+|...|++++|+..|++..+.. +-+...+..|... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988667789999999999999999999999999998864 3345566665555 345667788
Q ss_pred HHHHHHHHHH
Q 003913 526 AEKIYDLMCL 535 (787)
Q Consensus 526 A~~~~~~m~~ 535 (787)
+.++|.+|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 8889998875
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00063 Score=62.02 Aligned_cols=65 Identities=23% Similarity=0.291 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
..+|..+..+|.+.|++++|...+...++..+.+...|..+..+|...|++++|...|++..+..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 46788888888899999999999988888667788899999999999999999999999988864
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0035 Score=69.88 Aligned_cols=175 Identities=9% Similarity=-0.045 Sum_probs=146.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003913 345 EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE----------FMKSLEIFREMQERLGSASVPAYHKIIELLCK 414 (787)
Q Consensus 345 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 414 (787)
...-++|.+.++++.+.++. +..+|+.--..+.+.|+ +++|++.++++.+...+ +..+|+.-.-.+.+
T Consensus 42 ~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 34456789999999998765 67788877777777777 89999999999987544 78899988888889
Q ss_pred cC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc-------
Q 003913 415 AE--ETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG-MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA------- 484 (787)
Q Consensus 415 ~g--~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~------- 484 (787)
.+ +++++++.++++.+.. +-|..+|+.-..++.+.| .++++.+.++++++..+-|..+|+.....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 99 6799999999999976 457889998888889999 899999999999987788999999998888774
Q ss_pred -------CCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHH
Q 003913 485 -------GNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFV 524 (787)
Q Consensus 485 -------g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 524 (787)
+.+++|++.+++..... |-|...|+-+-..+.+.++.+
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~--P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHC--SSCSHHHHHHHHHHSCCCCCS
T ss_pred ccccccHHHHHHHHHHHHHHHhhC--CCCccHHHHHHHHHhcCCCcc
Confidence 56899999999999875 567889998888887777643
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00019 Score=78.69 Aligned_cols=92 Identities=13% Similarity=0.040 Sum_probs=83.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCC
Q 003913 442 NLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSG 521 (787)
Q Consensus 442 ~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g 521 (787)
.+...|.+.|++++|.+.|++.++..+.+..+|..+..+|.+.|++++|++.+++..+.. +.+..+|..+..+|.+.|
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC
Confidence 334556788999999999999998767789999999999999999999999999999975 557899999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 003913 522 DFVKAEKIYDLMCL 535 (787)
Q Consensus 522 ~~~~A~~~~~~m~~ 535 (787)
++++|++.|++.++
T Consensus 89 ~~~eA~~~~~~al~ 102 (477)
T 1wao_1 89 KFRAALRDYETVVK 102 (477)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999987
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0007 Score=71.31 Aligned_cols=140 Identities=14% Similarity=0.043 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL 411 (787)
Q Consensus 332 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 411 (787)
...+..+...+.+.|++++|.+.|++.++.-. . . ...-..+++.+ ... -+..+|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~--~---~-------~~~~~~~~~~~----~~~----~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE--G---S-------RAAAEDADGAK----LQP----VALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--H---H-------HHHSCHHHHGG----GHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh--c---C-------ccccChHHHHH----HHH----HHHHHHHHHHHH
Confidence 56788889999999999999999998876310 0 0 00001111110 111 134566777777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003913 412 LCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAE 491 (787)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~ 491 (787)
|.+.|++++|...+++.++.. +.+..+|..+..+|...|++++|...|++.++..+.+...+..+...+.+.++.+++.
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777643 3356777777778888888888888888777755567777777777777777666665
Q ss_pred H
Q 003913 492 E 492 (787)
Q Consensus 492 ~ 492 (787)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00022 Score=61.06 Aligned_cols=84 Identities=11% Similarity=0.042 Sum_probs=37.8
Q ss_pred CChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003913 381 GEFMKSLEIFREMQERL--GSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHL 458 (787)
Q Consensus 381 g~~~~A~~~~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 458 (787)
|++++|+..|++..+.+ -+-+...|..+...|...|++++|...|++.++.. +-+..++..+..+|.+.|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 44444444444444332 01122344444455555555555555555554432 2234445555555555555555555
Q ss_pred HHHHHHh
Q 003913 459 AFSECLE 465 (787)
Q Consensus 459 ~~~~m~~ 465 (787)
.|++.++
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0012 Score=59.23 Aligned_cols=61 Identities=13% Similarity=0.082 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 439 SYINLTNMYLNLGMHDRLHLAFSECLEK-------CRPNRTIY----GIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~p~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
.|..+..++.+.|++++|+..++..++- .+-+...| .....+|...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6777777777777777777777777664 55566778 8889999999999999999998865
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00038 Score=72.43 Aligned_cols=149 Identities=11% Similarity=0.046 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL 411 (787)
Q Consensus 332 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 411 (787)
...+..+...+.+.|++++|...|++..+.. |+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 5678888888999999999999999988764 33221 223334444433221 1367788889
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHhcCCHHHH
Q 003913 412 LCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLES-LKNAGNIEKA 490 (787)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~-~~~~g~~~~A 490 (787)
|.+.|++++|...+++.++.. +.+..+|..+..+|...|++++|...|+..++..+.+..++..|... ....+..+++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998854 44688999999999999999999999999887545566677777666 3345677888
Q ss_pred HHHHHHhhhC
Q 003913 491 EEIFNHMHSD 500 (787)
Q Consensus 491 ~~l~~~m~~~ 500 (787)
..+|.+|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8899988775
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0013 Score=58.22 Aligned_cols=111 Identities=12% Similarity=0.073 Sum_probs=78.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 003913 416 EETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN----AGNIEKAE 491 (787)
Q Consensus 416 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~----~g~~~~A~ 491 (787)
++.++|...|++..+.| .|+.. |...|...+.+++|.+.|++..+. -+...+..|...|.. .+++++|.
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 34566777777776666 33333 555666666677777777776652 456777777777776 67888888
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHcC
Q 003913 492 EIFNHMHSDQTIGVNTRSCNIILSAYLS----SGDFVKAEKIYDLMCLKK 537 (787)
Q Consensus 492 ~l~~~m~~~~~~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g 537 (787)
++|++..+.| +...+..|...|.. .++.++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 8888887776 66777777777777 778888888888887765
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00013 Score=61.46 Aligned_cols=64 Identities=11% Similarity=0.067 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
...+..+...+...|++++|...|++.++..+.+..+|..+..+|.+.|++++|++.|++..+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3455556666666666666666666666544556666666666666666666666666666664
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0032 Score=68.48 Aligned_cols=124 Identities=10% Similarity=-0.042 Sum_probs=80.1
Q ss_pred HHhcCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCC---C-HHHHHH
Q 003913 412 LCKAEETELTESLMKEFVET---GMKPL----MPSYINLTNMYLNLGMHDRLHLAFSECLE----KCRP---N-RTIYGI 476 (787)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~---g~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~~~p---~-~~~~~~ 476 (787)
+...|++++|..++++.++. -+-|+ ..+++.|..+|...|++++|..++++.++ ...| + ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44566777777766666542 11122 45677777777777777777777777653 1222 2 346778
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhh-----CCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 477 YLESLKNAGNIEKAEEIFNHMHS-----DQTIGVNT-RSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~-----~~~~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
|...|...|++++|+.++++..+ .|.-.|+. .+.+.+-.++...|.+++|+.+|.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888776653 23223333 3555666677788888888888888875
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00029 Score=59.23 Aligned_cols=95 Identities=8% Similarity=-0.017 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------HHHHH
Q 003913 402 VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN------RTIYG 475 (787)
Q Consensus 402 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~------~~~~~ 475 (787)
...|..+...+...|++++|...|++.++.. +.+..++..+..+|.+.|++++|...|+..++..+.+ ...+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3455555666666666666666666666542 3345666666666666666666666666666533333 44555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHh
Q 003913 476 IYLESLKNAGNIEKAEEIFNHM 497 (787)
Q Consensus 476 ~li~~~~~~g~~~~A~~l~~~m 497 (787)
.+..++...|+.++|.+.|+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 5555555555555555444433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0022 Score=51.24 Aligned_cols=79 Identities=18% Similarity=0.140 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 003913 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAY 517 (787)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~ 517 (787)
..+..+...|...|++++|...|++..+..+.+..+|..+...|.+.|++++|...|++..+.. +.+...+..+...+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHH
Confidence 3445555555555666666666655555444455566666666666666666666666665543 23445555544444
Q ss_pred H
Q 003913 518 L 518 (787)
Q Consensus 518 ~ 518 (787)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0022 Score=69.79 Aligned_cols=124 Identities=10% Similarity=0.097 Sum_probs=86.9
Q ss_pred HHHHcCChHHHHHHHHHHHHc---CCCC---C-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCC----HHHHH
Q 003913 376 AYAKIGEFMKSLEIFREMQER---LGSA---S-VPAYHKIIELLCKAEETELTESLMKEFVET---GMKPL----MPSYI 441 (787)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~~~---g~~p---~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~----~~t~~ 441 (787)
.+-..|++++|+.++++.++. -+.| + ..+++.|..+|...|++++|..++++.++- -+.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455677888888887776532 1112 2 346788888888888888888888776641 12222 46788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh----cCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 442 NLTNMYLNLGMHDRLHLAFSECLE----KCRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 442 ~li~~~~~~g~~~~a~~~~~~m~~----~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
.|...|...|++++|+.++++.++ ...|+ ..+.+.|-.++...|.+++|+.+|.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888764 22333 34556777888888999999999998876
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0015 Score=55.40 Aligned_cols=79 Identities=8% Similarity=-0.018 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 455 RLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 455 ~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
.|...|+...+..+.+...|..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35556666665455567777777777777777777777777777654 4456677777777777777777777777776
Q ss_pred H
Q 003913 535 L 535 (787)
Q Consensus 535 ~ 535 (787)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0011 Score=56.20 Aligned_cols=80 Identities=11% Similarity=0.102 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 420 LTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 420 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
.|...|++..+.. +.+...+..+...|...|++++|...|+..++..+.+..+|..+...|...|++++|...|++..+
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566655532 334666777777777777777777777777665556677777777777777777777777777765
Q ss_pred C
Q 003913 500 D 500 (787)
Q Consensus 500 ~ 500 (787)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00079 Score=60.17 Aligned_cols=85 Identities=12% Similarity=0.061 Sum_probs=48.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH
Q 003913 449 NLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGN----------IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYL 518 (787)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~ 518 (787)
+.+.+++|.+.++...+..+.+...|+.+..++...|+ +++|+..|++.++.. +-+..+|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHH
Confidence 33445555555555555445555555555555555544 346666666666653 334556666666666
Q ss_pred cCC-----------CHHHHHHHHHHHHH
Q 003913 519 SSG-----------DFVKAEKIYDLMCL 535 (787)
Q Consensus 519 ~~g-----------~~~~A~~~~~~m~~ 535 (787)
..| ++++|++.|++.++
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 553 66777777777665
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.018 Score=50.60 Aligned_cols=17 Identities=12% Similarity=-0.039 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHHHHcC
Q 003913 274 YYLQQAEFIFHNLLTSG 290 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~ 290 (787)
++.++|...|++..+.|
T Consensus 9 ~d~~~A~~~~~~aa~~g 25 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN 25 (138)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHcCC
Confidence 35555555555555555
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0078 Score=47.91 Aligned_cols=79 Identities=15% Similarity=0.101 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 003913 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN 483 (787)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~ 483 (787)
.|..+...+...|++++|...+++..+.. +.+..++..+..+|.+.|++++|...|++..+..+.+..++..+...+.+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 34444445555555555555555554432 22344555555555555555555555555555334455555555554443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0026 Score=56.81 Aligned_cols=95 Identities=11% Similarity=-0.007 Sum_probs=60.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 003913 416 EETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM----------HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG 485 (787)
Q Consensus 416 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g 485 (787)
+.+++|...+++..+.. +-+...|+.+..++...++ +++|+..|++.++-.+.+..+|..+..+|...|
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 34444444454444432 2234444444444444433 458888888887766667788888888887764
Q ss_pred -----------CHHHHHHHHHHhhhCCCCCCCHHHHHHHH
Q 003913 486 -----------NIEKAEEIFNHMHSDQTIGVNTRSCNIIL 514 (787)
Q Consensus 486 -----------~~~~A~~l~~~m~~~~~~~p~~~t~~~li 514 (787)
++++|++.|++..+. .|+...|...+
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l---~P~~~~y~~al 131 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDE---QPDNTHYLKSL 131 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 899999999999985 47765554433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0031 Score=51.92 Aligned_cols=61 Identities=13% Similarity=0.015 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 003913 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMH 498 (787)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 498 (787)
.++..+..+|.+.|++++|...|+..++..+.+..+|..+..+|.+.|++++|.+.|++..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444444444443323334444444444444444444444444443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0049 Score=50.70 Aligned_cols=66 Identities=9% Similarity=-0.050 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 468 RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+.+...|..+...|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|++.|++.++
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4578899999999999999999999999999875 45678999999999999999999999999886
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0063 Score=49.66 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=34.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 444 TNMYLNLGMHDRLHLAFSECLEKCRPNRT-IYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 444 i~~~~~~g~~~~a~~~~~~m~~~~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
...+.+.|++++|...|+...+..+.+.. .|..+...|...|++++|++.|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34455566666666666666554444555 6666666666666666666666666654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.066 Score=54.90 Aligned_cols=67 Identities=15% Similarity=0.043 Sum_probs=56.2
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 466 KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 466 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
..+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++...
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 346788888888777777799999999999998864 7888888888888899999999999988886
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.032 Score=59.49 Aligned_cols=85 Identities=9% Similarity=-0.080 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHh----cCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CCCCCCC-HHHHHHHHHH
Q 003913 451 GMHDRLHLAFSECLE----KCRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHS-----DQTIGVN-TRSCNIILSA 516 (787)
Q Consensus 451 g~~~~a~~~~~~m~~----~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~~~p~-~~t~~~li~~ 516 (787)
|++++|+.++++.++ -..|+ ..+++.|..+|...|++++|+.++++..+ .|.-.|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 455555555555443 11121 34567777777777777777777766543 2222333 3577888888
Q ss_pred HHcCCCHHHHHHHHHHHHH
Q 003913 517 YLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~ 535 (787)
|...|++++|+.++++.++
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 8888888888888887764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.053 Score=57.82 Aligned_cols=85 Identities=6% Similarity=-0.061 Sum_probs=60.7
Q ss_pred cCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cC---CCC-HHHHHHHHH
Q 003913 415 AEETELTESLMKEFVET---GMKPL----MPSYINLTNMYLNLGMHDRLHLAFSECLE----KC---RPN-RTIYGIYLE 479 (787)
Q Consensus 415 ~g~~~~A~~l~~~m~~~---g~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~~---~p~-~~~~~~li~ 479 (787)
.|++++|..++++.++. -+.|+ ..+++.|..+|...|++++|+.++++.++ .. .|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46777777777776652 12232 45778888888888888888888887764 12 222 356888899
Q ss_pred HHHhcCCHHHHHHHHHHhhh
Q 003913 480 SLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 480 ~~~~~g~~~~A~~l~~~m~~ 499 (787)
.|...|++++|+.++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999998887754
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.086 Score=56.24 Aligned_cols=92 Identities=11% Similarity=-0.076 Sum_probs=63.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CCCCCCC-HHH
Q 003913 444 TNMYLNLGMHDRLHLAFSECLEK----CRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHS-----DQTIGVN-TRS 509 (787)
Q Consensus 444 i~~~~~~g~~~~a~~~~~~m~~~----~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~~~p~-~~t 509 (787)
+..+.+.|++++|+.++++.++. ..|+ ..+++.|...|...|++++|+.++++... .|.-.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33455666777777777776641 1222 35677788888888888888888877653 2222333 467
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 510 CNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 510 ~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888889999999999888888764
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.032 Score=45.27 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=33.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 003913 410 ELLCKAEETELTESLMKEFVETGMKPLMP-SYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTI 473 (787)
Q Consensus 410 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~ 473 (787)
..+...|++++|...+++.++.. +.+.. .+..+..+|...|++++|...|+..++..+.+..+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 34455555666666665555532 22344 55555666666666666666666655533333333
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.12 Score=55.07 Aligned_cols=91 Identities=12% Similarity=0.056 Sum_probs=65.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCC---CC-HHH
Q 003913 409 IELLCKAEETELTESLMKEFVETG---MKPL----MPSYINLTNMYLNLGMHDRLHLAFSECLE----KCR---PN-RTI 473 (787)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~~g---~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~~~---p~-~~~ 473 (787)
+..+.+.|++++|..++++.++.. +.|+ ..+++.|..+|...|++++|+.++++.++ -.. |+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556678888888887777521 2232 45778888888888888888888887764 122 22 356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 474 YGIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999998887754
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.072 Score=46.93 Aligned_cols=85 Identities=11% Similarity=0.022 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCC--CHHHHHHHHHHHHcCCCHHHHH
Q 003913 453 HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG---NIEKAEEIFNHMHSDQTIGV--NTRSCNIILSAYLSSGDFVKAE 527 (787)
Q Consensus 453 ~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~~~~~p--~~~t~~~li~~~~~~g~~~~A~ 527 (787)
+..+++.|.+..+...++..+...+..++++.+ ++++++.+|++..+.+ .| +...+..|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHHH
Confidence 345555666555534567777777777888877 5668888888877764 24 3456666677778888888888
Q ss_pred HHHHHHHHcCCccCHH
Q 003913 528 KIYDLMCLKKYEIESA 543 (787)
Q Consensus 528 ~~~~~m~~~g~~~~p~ 543 (787)
++++.+++ ++|+
T Consensus 92 ~y~~~lL~----ieP~ 103 (152)
T 1pc2_A 92 KYVRGLLQ----TEPQ 103 (152)
T ss_dssp HHHHHHHH----HCTT
T ss_pred HHHHHHHh----cCCC
Confidence 88888887 6664
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.31 Score=49.96 Aligned_cols=75 Identities=12% Similarity=-0.006 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHH
Q 003913 434 KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNI 512 (787)
Q Consensus 434 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ 512 (787)
..+..+|..+...+...|++++|...+++++... |+...|..+...+.-.|+.++|.+.|++....+ |...||.-
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~---P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR---PGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCcChHHH
Confidence 5578888888888888899999999999998832 788888888899999999999999999998864 77777643
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.24 E-value=1.2 Score=37.74 Aligned_cols=137 Identities=15% Similarity=0.035 Sum_probs=80.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003913 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLA 459 (787)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 459 (787)
.|.+++..++..+.... .+..-||-+|--....-+-+-..++++..-+ -.| ...+|++......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhhcHHHHHHH
Confidence 45556666666665543 2444555555444444444444444443322 111 1233444444444
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 003913 460 FSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKY 538 (787)
Q Consensus 460 ~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 538 (787)
+-.+ ..+....+..++.+..+|+-++-.+++..+... .+|++.....+..||.+-|+..+|.+++.+..++|+
T Consensus 84 ~~~~----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n--~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVIN----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN--NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHT----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHh----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc--CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 4332 234556666777788888888888888886544 367777777888888888888888888888887774
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.13 E-value=0.25 Score=57.71 Aligned_cols=100 Identities=15% Similarity=0.112 Sum_probs=47.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003913 413 CKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEE 492 (787)
Q Consensus 413 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 492 (787)
...|++++|.++.+.+ .+...|..|...+.+.++++.|++.|..+.. |..+...|...|+.+...+
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d--------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD--------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC--------HHHHHHHHHHTTCHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC--------hhhhHHHHHHcCCHHHHHH
Confidence 3455555555553321 2345556666666666666666666655431 2233344444455544444
Q ss_pred HHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003913 493 IFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533 (787)
Q Consensus 493 l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 533 (787)
+-+.....| + ++.-..+|.+.|++++|++++.++
T Consensus 729 ~~~~a~~~~----~---~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 729 LAKDAETTG----K---FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHTT----C---HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHcC----c---hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 444444433 1 122233344445555555554443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.15 Score=41.02 Aligned_cols=67 Identities=12% Similarity=0.044 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 003913 468 RPNRTIYGIYLESLKNAGN---IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (787)
+.|...+..+..++...++ .++|..+|++..+.. +-+......+...+.+.|++++|+..|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455666666666654443 566777777666654 445566666666666777777777777776653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.72 E-value=0.39 Score=56.02 Aligned_cols=28 Identities=14% Similarity=0.064 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003913 366 PTPAFVYKMEAYAKIGEFMKSLEIFREM 393 (787)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 393 (787)
+...|..|...+.+.|+++.|.+.|.++
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3445555555555555555555555544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.18 Score=40.55 Aligned_cols=67 Identities=9% Similarity=0.035 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 435 PLMPSYINLTNMYLNLGM---HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 435 p~~~t~~~li~~~~~~g~---~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
.|...+..+..++...++ .++|..++++.++..+.++.+...+...+.+.|++++|+..|+++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 345555555555543332 5667777777666556667777777777777777777777777777654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.59 E-value=0.2 Score=44.15 Aligned_cols=83 Identities=11% Similarity=-0.053 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 003913 418 TELTESLMKEFVETGMKPLMPSYINLTNMYLNLG---MHDRLHLAFSECLEKCRP--NRTIYGIYLESLKNAGNIEKAEE 492 (787)
Q Consensus 418 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g---~~~~a~~~~~~m~~~~~p--~~~~~~~li~~~~~~g~~~~A~~ 492 (787)
+..+.+.|.+..+.| .++..+...+..++++.+ +.+++..+++...+...| +...+-.|.-+|.+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 445566666666655 477888888888888877 566888888888774334 45666777788899999999999
Q ss_pred HHHHhhhCC
Q 003913 493 IFNHMHSDQ 501 (787)
Q Consensus 493 l~~~m~~~~ 501 (787)
.++.+.+..
T Consensus 93 y~~~lL~ie 101 (152)
T 1pc2_A 93 YVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 999998853
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.26 E-value=2 Score=38.80 Aligned_cols=104 Identities=13% Similarity=0.192 Sum_probs=60.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003913 374 MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMH 453 (787)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 453 (787)
.....+.|+++.|.++.+++ -+...|..|.......|+++-|.+.|.+..+ +..|.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34455677777777776554 2666777777777777777777777766543 33445555556666
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 003913 454 DRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHM 497 (787)
Q Consensus 454 ~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 497 (787)
+...++-+...... -+|.....+.-.|+++++.++|.+.
T Consensus 77 e~L~kla~iA~~~g-----~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE-----DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHHTT-----CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc-----cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 55544433332211 1333344445567777777666544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.00 E-value=0.88 Score=37.15 Aligned_cols=62 Identities=10% Similarity=0.079 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 439 SYINLTNMYLNLGMHDRLHLAFSECLEK-------CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
-+..|...+.+.|++..|...|+...+. ..+...++..|..+|.+.|++++|...+++..+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3344445555555555555555554431 1123445555555555555555555555555543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=92.55 E-value=1.3 Score=36.16 Aligned_cols=67 Identities=13% Similarity=0.023 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 003913 405 YHKIIELLCKAEETELTESLMKEFVETG------MKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNR 471 (787)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~ 471 (787)
+..|...+.+.|+++.|...|+...+.- -.+...++..|..+|.+.|+++.|...+++..+..+-+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~ 80 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 3344444444444444444444443310 012344555556666666666666666665554333333
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=92.46 E-value=4.5 Score=34.36 Aligned_cols=134 Identities=11% Similarity=0.142 Sum_probs=86.9
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCChHH
Q 003913 344 KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPA---YHKIIELLCKAEETEL 420 (787)
Q Consensus 344 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~li~~~~~~g~~~~ 420 (787)
-.|.++++.++..+..... +..-||.+|--....-+.+-..++++.+-+- -|... .-.++..|++.+.
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis~C~NlKrVi~C~~~~n~--- 89 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLDKCQNLKSVVECGVINNT--- 89 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGGGCSCTHHHHHHHHHTTC---
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCcHhhhcHHHHHHHHHHhcc---
Confidence 4688888888888777654 5566666666666555655555555554321 22221 1223344443332
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 421 TESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 421 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
+..-+...++.....|.-+.-.+++..+....+|++...-.+..+|.+.|+..+|.+++.+..++
T Consensus 90 ---------------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 90 ---------------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp ---------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ---------------hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 22334455666777788888888888876666778888888888888888888888888888888
Q ss_pred C
Q 003913 501 Q 501 (787)
Q Consensus 501 ~ 501 (787)
|
T Consensus 155 G 155 (172)
T 1wy6_A 155 G 155 (172)
T ss_dssp T
T ss_pred h
Confidence 8
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.17 E-value=0.95 Score=38.25 Aligned_cols=81 Identities=7% Similarity=-0.036 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhhhCCCCCC--CHHHHHHHHHHHHcCCCHHHHH
Q 003913 453 HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEK---AEEIFNHMHSDQTIGV--NTRSCNIILSAYLSSGDFVKAE 527 (787)
Q Consensus 453 ~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~---A~~l~~~m~~~~~~~p--~~~t~~~li~~~~~~g~~~~A~ 527 (787)
+..+.+.|........++..+--.+..++++..+... ++.++++....+ .| .......|.-|+.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444555555444234666666666677777665444 777777777654 23 2334445555777888888888
Q ss_pred HHHHHHHH
Q 003913 528 KIYDLMCL 535 (787)
Q Consensus 528 ~~~~~m~~ 535 (787)
++++.+++
T Consensus 95 ~~~~~lL~ 102 (126)
T 1nzn_A 95 KYVRGLLQ 102 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888776
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.77 E-value=7.1 Score=35.14 Aligned_cols=101 Identities=9% Similarity=0.045 Sum_probs=74.9
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 003913 342 CAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELT 421 (787)
Q Consensus 342 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 421 (787)
..+.|+++.|.++.+.+ -+...|..|.+.....|+++-|.+.|.+..+ +..+.-.|...|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34789999999987766 2678999999999999999999999987653 23455556667887776
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003913 422 ESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSEC 463 (787)
Q Consensus 422 ~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 463 (787)
..+-+.....| -++.....+.-.|+++++.++|.+.
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 66666555555 2566667777889998888877554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=90.90 E-value=1.6 Score=36.88 Aligned_cols=85 Identities=13% Similarity=0.009 Sum_probs=59.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHH
Q 003913 416 EETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDR---LHLAFSECLEKCRP--NRTIYGIYLESLKNAGNIEKA 490 (787)
Q Consensus 416 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~---a~~~~~~m~~~~~p--~~~~~~~li~~~~~~g~~~~A 490 (787)
..+..+.+-|.+....| .++..+-..+..++.+.....+ ++.++..+.+...| .....-.|.-++.+.|++++|
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34455566666665555 3777787888888888776665 77778777764323 344555667788888999999
Q ss_pred HHHHHHhhhCC
Q 003913 491 EEIFNHMHSDQ 501 (787)
Q Consensus 491 ~~l~~~m~~~~ 501 (787)
.+.++.+.+..
T Consensus 94 ~~~~~~lL~~e 104 (126)
T 1nzn_A 94 LKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99998888853
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=90.67 E-value=1.6 Score=42.96 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhc-CCH
Q 003913 418 TELTESLMKEFVETGMKPL---MPSYINLTNMYLNL-----GMHDRLHLAFSECLEKCR-PNRTIYGIYLESLKNA-GNI 487 (787)
Q Consensus 418 ~~~A~~l~~~m~~~g~~p~---~~t~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~-p~~~~~~~li~~~~~~-g~~ 487 (787)
...|...+++.++ +.|+ ...|..|...|.+. |+.++|.+.|++.++-.+ -+..++....+.|++. |+.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 3455555555555 3454 45666777777763 777777777777766322 2366777777777774 777
Q ss_pred HHHHHHHHHhhhCC
Q 003913 488 EKAEEIFNHMHSDQ 501 (787)
Q Consensus 488 ~~A~~l~~~m~~~~ 501 (787)
++|.+.+++.....
T Consensus 257 ~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 257 AGFDEALDRALAID 270 (301)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCC
Confidence 77777777777754
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.60 E-value=3.3 Score=46.93 Aligned_cols=53 Identities=17% Similarity=-0.027 Sum_probs=39.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 003913 446 MYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMH 498 (787)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 498 (787)
-|...|+++.|+++-++...-.+-+-.+|..|...|...|+++.|+-.++.++
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 35566777778777777766556667788888888888888888888877775
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.49 E-value=2.5 Score=44.15 Aligned_cols=78 Identities=10% Similarity=0.010 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----cCCccCHHHHHH
Q 003913 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL-----KKYEIESAWMEK 547 (787)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~p~~~~~ 547 (787)
+...++..+...|++++|...+..+.... +-+...|..+|.+|.+.|+..+|++.|++..+ -|+.|.|.+...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 34556777888899999998888888775 55788899999999999999999988888764 377777776444
Q ss_pred HHHHH
Q 003913 548 LDYVL 552 (787)
Q Consensus 548 l~~~~ 552 (787)
+..++
T Consensus 251 ~~~il 255 (388)
T 2ff4_A 251 NERIL 255 (388)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=88.38 E-value=22 Score=41.22 Aligned_cols=152 Identities=9% Similarity=0.017 Sum_probs=67.8
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHHcCChHHHHHHHHHHHHcCCCCCH-HHHH---HHHHHHHhc
Q 003913 342 CAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEA--YAKIGEFMKSLEIFREMQERLGSASV-PAYH---KIIELLCKA 415 (787)
Q Consensus 342 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~---~li~~~~~~ 415 (787)
++-.|+-+....++..+.+.. +..+...+.-+ +...|+.+.+..+.+.+... .|. .-|. ++.-+|+..
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTS
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCC
Confidence 334555555566655554432 22222223333 33456666666666665543 122 2222 222345555
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 003913 416 EETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI-EKAEEIF 494 (787)
Q Consensus 416 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~-~~A~~l~ 494 (787)
|+.....+++..+.... ..++.....+.-++...|+.+.+.+++..+.+...|.+.--..+.-+....|.. .+|.+++
T Consensus 574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 56555555666665431 222222222233333445555555555544442333333333333333333332 4566666
Q ss_pred HHhhhC
Q 003913 495 NHMHSD 500 (787)
Q Consensus 495 ~~m~~~ 500 (787)
..+...
T Consensus 653 ~~L~~D 658 (963)
T 4ady_A 653 DPLTKD 658 (963)
T ss_dssp HHHHTC
T ss_pred HHHccC
Confidence 666543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=88.03 E-value=3 Score=40.96 Aligned_cols=93 Identities=10% Similarity=0.028 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHc-----cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCc-CCC
Q 003913 160 NETGFRVYEWMMQQHWYRFDFALATKLADYMGK-----ERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPV-QGC 233 (787)
Q Consensus 160 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~-----~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~-~g~ 233 (787)
...|...+++.++...--.+-..|+.|...|.+ -|+.++|.+.|++-.+.+..-+..++......++ + .|+
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~---~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALC---IPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTT---TTTTC
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH---HhcCC
Confidence 467788888888865222246789999999999 4999999999999998643224777888888888 5 599
Q ss_pred HHHHHHHHHHHHHhCCCC--CCHHH
Q 003913 234 LDEACSIYNRMIQLGGYQ--PRPSL 256 (787)
Q Consensus 234 ~~~A~~l~~~m~~~~g~~--pd~~t 256 (787)
.++|.+.+++..+. ... |+...
T Consensus 256 ~~~a~~~L~kAL~a-~p~~~P~~~l 279 (301)
T 3u64_A 256 RAGFDEALDRALAI-DPESVPHNKL 279 (301)
T ss_dssp HHHHHHHHHHHHHC-CGGGCSSCHH
T ss_pred HHHHHHHHHHHHcC-CCCCCCChhH
Confidence 99999999999985 333 55443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=87.32 E-value=13 Score=32.34 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 451 GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 451 g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
+++++|.++|+.+++.++.=...|.....--.++|++..|.+++.+.+..+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 444455555555543111114455555555555566666666665555554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=87.10 E-value=14 Score=32.14 Aligned_cols=69 Identities=13% Similarity=0.072 Sum_probs=44.5
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHH-HHHHHHHHHhhcc
Q 003913 484 AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESA-WMEKLDYVLSLNR 556 (787)
Q Consensus 484 ~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~-~~~~l~~~~~l~~ 556 (787)
.++.++|.++|+.+++.+ -+ =...|.....--.+.|+...|.+++.+.+.. .+.|. .++....-+..+.
T Consensus 73 i~D~d~aR~vy~~a~~~h-Kk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~--~~k~~~~le~a~~nl~~~~ 142 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANC-KK-FAFVHISFAQFELSQGNVKKSKQLLQKAVER--GAVPLEMLEIALRNLNLQK 142 (161)
T ss_dssp HHCGGGCHHHHHHHHHHC-TT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCBCHHHHHHHHHHHHTTC
T ss_pred hcCHHHHHHHHHHHHHHh-HH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CCCcHHHHHHHHHhhhcCC
Confidence 367888888888886543 22 2677777777777888888888888888853 34443 2333333344443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=84.23 E-value=4 Score=32.56 Aligned_cols=62 Identities=13% Similarity=0.054 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003913 418 TELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLE 479 (787)
Q Consensus 418 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~ 479 (787)
.-+..+-++.+....+.|++.+..+.+++|-+.+++..|.++|+.+...+.+...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 33555566666666777888888888888888888888888888777655555556666654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.73 E-value=5 Score=45.46 Aligned_cols=55 Identities=18% Similarity=0.025 Sum_probs=47.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
.+-+...|+++-|+++-++.... .|-+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34456689999999999999986 35568999999999999999999999999884
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.17 E-value=50 Score=34.85 Aligned_cols=169 Identities=9% Similarity=0.120 Sum_probs=78.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----HcCChHHHHH--HHHHHH---HcCCC
Q 003913 329 EEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYA----KIGEFMKSLE--IFREMQ---ERLGS 399 (787)
Q Consensus 329 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~--~~~~m~---~~g~~ 399 (787)
.-.......++..|.+.|+++...+.+..+.+..-. -......+|..+. .....+.... +.+... +..+.
T Consensus 53 ~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kif 131 (445)
T 4b4t_P 53 ASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIF 131 (445)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCC
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchH
Confidence 334566777888888888888877776655544222 1222233333222 1222221111 111000 00000
Q ss_pred C---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cC-
Q 003913 400 A---SVPAYHKIIELLCKAEETELTESLMKEFVET--GMKPL---MPSYINLTNMYLNLGMHDRLHLAFSECLE---KC- 467 (787)
Q Consensus 400 p---~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~---~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~- 467 (787)
. .......|...+...|++.+|..++..+... |.... ...+...++.|...+++..|..++.++.. ..
T Consensus 132 lE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~ 211 (445)
T 4b4t_P 132 VEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP 211 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC
Confidence 0 0112234555666666666666666665531 21111 23445555556666666666666555431 11
Q ss_pred -CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 003913 468 -RPN--RTIYGIYLESLKNAGNIEKAEEIFNHMH 498 (787)
Q Consensus 468 -~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~ 498 (787)
.|+ ...|..++..+...+++.+|...|.+..
T Consensus 212 ~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 212 KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 111 1234455555555566665555555443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=81.90 E-value=5.1 Score=41.72 Aligned_cols=69 Identities=4% Similarity=-0.023 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CCCCCCCHHH
Q 003913 440 YINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS-----DQTIGVNTRS 509 (787)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~~~p~~~t 509 (787)
...++.++...|++++|...+..+....+-+...|..||.+|.+.|+..+|++.|++..+ .| +.|...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG-~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLG-IDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHS-CCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC-CCCCHHH
Confidence 445667777888888888888887776677888999999999999999999998887654 36 7777544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 787 | ||||
| d1r7ma2 | 105 | d.95.2.1 (A:121-225) DNA endonuclease I-SceI {Bake | 4e-17 | |
| d1r7ma1 | 118 | d.95.2.1 (A:3-120) DNA endonuclease I-SceI {Baker' | 3e-16 |
| >d1r7ma2 d.95.2.1 (A:121-225) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 105 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Homing endonuclease-like superfamily: Homing endonucleases family: Group I mobile intron endonuclease domain: DNA endonuclease I-SceI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 75.2 bits (185), Expect = 4e-17
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 661 VIPK-LIHRWLTPRALAYWFMYGGHR------TSVGDILLKLK-VSSEGIALVFKTLKAR 712
IP L+ +LTP +LAYWFM G + ++ I+L + + E + + K L+ +
Sbjct: 3 TIPNNLVENYLTPMSLAYWFMDDGGKWDYNKNSTNKSIVLNTQSFTFEEVEYLVKGLRNK 62
Query: 713 -SLDCRVKKKGRVFWIGFLGSNSTLFWKLIEPYVLDELK 750
L+C VK I + +F+ LI+PY++ ++
Sbjct: 63 FQLNCYVKINKNKPIIYIDSMSYLIFYNLIKPYLIPQMM 101
|
| >d1r7ma1 d.95.2.1 (A:3-120) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 118 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Homing endonuclease-like superfamily: Homing endonucleases family: Group I mobile intron endonuclease domain: DNA endonuclease I-SceI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.4 bits (180), Expect = 3e-16
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 12/112 (10%)
Query: 552 LSLNRKEVK--KPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSV 609
L N K +K K + L+ EQ E IGL+LG I S ++ K + ++F++ +
Sbjct: 10 LGPNSKLLKEYKSQLIELNIEQFEAGIGLILGDAYIRSRDEGKTYCMQFEW-----KNKA 64
Query: 610 LRRYLYDQYHEWLHPSFKV-----SDGNDDIPYKYSTISHPYFCFYADKFWP 656
++ Y +W+ GN I + T H F A+ F
Sbjct: 65 YMDHVCLLYDQWVLSPPHKKERVNHLGNLVITWGAQTFKHQAFNKLANLFIV 116
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 787 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.87 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.87 | |
| d1r7ma2 | 105 | DNA endonuclease I-SceI {Baker's yeast (Saccharomy | 99.87 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.46 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.43 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.08 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.97 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.94 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.86 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.86 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.85 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.82 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.76 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.74 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.72 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.33 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.26 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.25 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.23 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.23 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.22 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.18 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.15 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.09 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.08 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.04 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.0 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.89 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.86 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.79 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.78 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.71 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.71 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.62 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.61 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.53 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.51 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.44 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.43 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.42 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.38 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.37 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.34 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.3 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.27 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.1 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.94 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.94 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.9 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.78 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.78 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.62 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.41 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.87 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.65 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.24 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.9 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.21 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.15 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 87.8 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 85.05 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 83.2 | |
| d1r7ma1 | 118 | DNA endonuclease I-SceI {Baker's yeast (Saccharomy | 82.34 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.7e-18 Score=183.32 Aligned_cols=363 Identities=13% Similarity=0.050 Sum_probs=290.8
Q ss_pred HhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCC
Q 003913 154 CMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGC 233 (787)
Q Consensus 154 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~ 233 (787)
.-+.|++++|.+.++.+.+.. +.+..++..+...|.+.|++++|...|++..+.... +..+|..+...|. +.|+
T Consensus 9 ~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~---~~g~ 82 (388)
T d1w3ba_ 9 EYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYK---ERGQ 82 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH---HHTC
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhh---hhcc
Confidence 347899999999999999875 567888999999999999999999999999886422 5678999999998 8999
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCH
Q 003913 234 LDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDK 313 (787)
Q Consensus 234 ~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~ 313 (787)
+++|+..+....... ..+.............. +....+...................... ......+..
T Consensus 83 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 151 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK--PDFIDGYINLAAALVAA------GDMEGAVQAYVSALQYNPDLYCVRSDLG---NLLKALGRL 151 (388)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH------SCSSHHHHHHHHHHHHCTTCTHHHHHHH---HHHHTTSCH
T ss_pred ccccccccccccccc--ccccccccccccccccc------cccccccccccccccccccccccccccc---ccccccchh
Confidence 999999999999852 22333222222222221 1334444444444444433332222222 445566667
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003913 314 ERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREM 393 (787)
Q Consensus 314 ~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 393 (787)
..+...+....... +-+..++..+...+...|++++|...+++..+..+. +..+|..+...|...|++++|...|++.
T Consensus 152 ~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 229 (388)
T d1w3ba_ 152 EEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRA 229 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred hhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHh
Confidence 77777777776642 235667888889999999999999999999887643 6788999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 003913 394 QERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTI 473 (787)
Q Consensus 394 ~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~ 473 (787)
..... .+...+..+...+.+.|++++|...|++..+.. +-+..++..+...|...|++++|...++......+.+...
T Consensus 230 ~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 307 (388)
T d1w3ba_ 230 LSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307 (388)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHhh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchh
Confidence 87643 367788889999999999999999999998853 3457899999999999999999999999998878889999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHH
Q 003913 474 YGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESA 543 (787)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~ 543 (787)
+..+...|.+.|++++|++.|++..+.. |-+..+|..+...|.+.|++++|++.|++.++ ++|+
T Consensus 308 ~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----l~P~ 371 (388)
T d1w3ba_ 308 LNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR----ISPT 371 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT----TCTT
T ss_pred hhHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCC
Confidence 9999999999999999999999999864 45688999999999999999999999999986 5665
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=3.8e-19 Score=188.44 Aligned_cols=381 Identities=14% Similarity=0.065 Sum_probs=307.6
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 003913 186 LADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPR-PSLHNSLFRAL 264 (787)
Q Consensus 186 li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~~~ 264 (787)
+...+.+.|++++|++.|+++.+.... +...|..+...|. +.|++++|+..|++..+. .|+ ..++..+...+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~---~~~~~~~A~~~~~~al~~---~p~~~~a~~~l~~~~ 77 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHF---QCRRLDRSAHFSTLAIKQ---NPLLAEAYSNLGNVY 77 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHh
Confidence 345677889999999999999886422 5678888888888 899999999999999885 354 45666666667
Q ss_pred HcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003913 265 VSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAK 344 (787)
Q Consensus 265 ~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~ 344 (787)
... |++++|...+....+........... .. ...........+........... ................
T Consensus 78 ~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 147 (388)
T d1w3ba_ 78 KER------GQLQEAIEHYRHALRLKPDFIDGYIN-LA--AALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKA 147 (388)
T ss_dssp HHH------TCHHHHHHHHHHHHHHCTTCHHHHHH-HH--HHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHT
T ss_pred hhh------cccccccccccccccccccccccccc-cc--ccccccccccccccccccccccc-cccccccccccccccc
Confidence 665 69999999999998876543322222 22 22222222333334444333332 3344555566677778
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003913 345 EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESL 424 (787)
Q Consensus 345 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l 424 (787)
.+....+...+.......+. +...+..+...+...|++++|...+++..+... -+..+|..+...+...|++++|...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~ 225 (388)
T d1w3ba_ 148 LGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAA 225 (388)
T ss_dssp TSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred cchhhhhHHHHHHhhccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHH
Confidence 89999999988888776643 577888899999999999999999999887632 2677899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 003913 425 MKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIG 504 (787)
Q Consensus 425 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 504 (787)
+++..... ..+...+..+...|.+.|++++|...|++.++..+.+..+|..+...|...|++++|++.++...... +
T Consensus 226 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~ 302 (388)
T d1w3ba_ 226 YLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--P 302 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--T
T ss_pred HHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC--C
Confidence 99998865 45678889999999999999999999999998777789999999999999999999999999998874 6
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhh
Q 003913 505 VNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLC 584 (787)
Q Consensus 505 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~ 584 (787)
.+...+..+...+.+.|++++|++.|++.++ ..|+. ..+|..+...+.
T Consensus 303 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~p~~----------------------------~~~~~~la~~~~ 350 (388)
T d1w3ba_ 303 THADSLNNLANIKREQGNIEEAVRLYRKALE----VFPEF----------------------------AAAHSNLASVLQ 350 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT----SCTTC----------------------------HHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHCCCHHHHHHHHHHHHH----hCCCC----------------------------HHHHHHHHHHHH
Confidence 7889999999999999999999999999886 56652 567888899999
Q ss_pred hccchhhcceeEE--EEEccCCcccHHHHHHHHHHchh
Q 003913 585 IESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHE 620 (787)
Q Consensus 585 ~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~ 620 (787)
..|++++|...++ ++++|+++.++..|+.+|.+.|+
T Consensus 351 ~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 351 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999988 88899999999999999998774
|
| >d1r7ma2 d.95.2.1 (A:121-225) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Homing endonuclease-like superfamily: Homing endonucleases family: Group I mobile intron endonuclease domain: DNA endonuclease I-SceI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=8.8e-23 Score=167.97 Aligned_cols=96 Identities=29% Similarity=0.518 Sum_probs=85.6
Q ss_pred cccccc-chhhcCChhHHHHHhhcCCccc------CC-CcEEEEccCCHHHHHHHHHHHhhC-CCceEEEecCcEEEEEE
Q 003913 659 RLVIPK-LIHRWLTPRALAYWFMYGGHRT------SV-GDILLKLKVSSEGIALVFKTLKAR-SLDCRVKKKGRVFWIGF 729 (787)
Q Consensus 659 ~~~~~~-mi~~gl~P~~lay~~m~~g~~~------~~-g~~~~~~~g~~~e~~~l~~~l~~~-gl~~~~~~~~~~~~i~~ 729 (787)
+|++|+ .++++++|.++|||+|+||++. .+ |..+++++++.+|++.|.+.|..+ ||+|++++++.+|+|||
T Consensus 1 KK~iP~~li~~~Ltp~~LA~W~MDDG~~~~~~~~~~~~~i~l~T~~Ft~~e~~~L~~~L~~kf~l~~~i~~~~~~~~i~i 80 (105)
T d1r7ma2 1 KKTIPNNLVENYLTPMSLAYWFMDDGGKWDYNKNSTNKSIVLNTQSFTFEEVEYLVKGLRNKFQLNCYVKINKNKPIIYI 80 (105)
T ss_dssp EECCCTTHHHHHCCHHHHHHHHHHHEEESCCCTTCCCCCEEECCTTSCHHHHHHHHHHHHHHHCCCEEEEEETTEEEEEE
T ss_pred CCcCCHHHHHhhCCHHHHHheEecCCccccccccCCCCceEEEeCCCCHHHHHHHHHHHHHHhCceEEEEecCCeEEEEE
Confidence 367887 5899999999999999999863 23 444555555999999999999998 99999999999999999
Q ss_pred eCCchHHHHHhcccccccccccccc
Q 003913 730 LGSNSTLFWKLIEPYVLDELKEDLL 754 (787)
Q Consensus 730 ~~~~~~~~~~lv~~~~~~~m~~k~~ 754 (787)
+++|+++|+++|+|||+|||.||||
T Consensus 81 ~~~s~~~~~~lI~pyi~psm~YKlp 105 (105)
T d1r7ma2 81 DSMSYLIFYNLIKPYLIPQMMYKLP 105 (105)
T ss_dssp CGGGHHHHHHHHTTTCCGGGGGGCC
T ss_pred ehhHHHHHHHHhhhcCccccccCCC
Confidence 9999999999999999999999997
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=7.1e-12 Score=128.52 Aligned_cols=225 Identities=14% Similarity=0.008 Sum_probs=188.0
Q ss_pred HhhhccCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 003913 304 LHSYQDNIDKERISLLKKEMQQAGFEE-GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE 382 (787)
Q Consensus 304 ~~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 382 (787)
+..+.+.|++++|...|++..+. .| +..+|..+..+|...|++++|...+.+..+..+. +...|..+...|...|+
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccccc
Confidence 45677889999999999999885 45 4678999999999999999999999999987654 67888899999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHH
Q 003913 383 FMKSLEIFREMQERLGSASV----------------PAYHKIIELLCKAEETELTESLMKEFVETG-MKPLMPSYINLTN 445 (787)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~----------------~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~li~ 445 (787)
+++|.+.+++..... |+. ......+..+...+...+|...+.+..+.. -.++..++..+..
T Consensus 103 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~ 180 (323)
T d1fcha_ 103 QRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 180 (323)
T ss_dssp HHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred ccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 999999999987642 221 111122334455667888999998887643 2346788899999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHH
Q 003913 446 MYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVK 525 (787)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~ 525 (787)
.+...|++++|...|+......+-+..+|..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~ 258 (323)
T d1fcha_ 181 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGAHRE 258 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHh--hccHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999988667789999999999999999999999999999864 4468899999999999999999
Q ss_pred HHHHHHHHHH
Q 003913 526 AEKIYDLMCL 535 (787)
Q Consensus 526 A~~~~~~m~~ 535 (787)
|++.|++.++
T Consensus 259 A~~~~~~al~ 268 (323)
T d1fcha_ 259 AVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999987
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=3.7e-12 Score=130.75 Aligned_cols=232 Identities=11% Similarity=0.032 Sum_probs=187.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003913 338 VLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEE 417 (787)
Q Consensus 338 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 417 (787)
....+.+.|++++|...|+++++..+. +..+|..+..+|...|++++|...|++..+... -+...|..+...|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-cccccccccccccccccc
Confidence 445678999999999999999998754 688999999999999999999999999987632 367889999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHH
Q 003913 418 TELTESLMKEFVETGMKPL----------------MPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPNRTIYGIYLE 479 (787)
Q Consensus 418 ~~~A~~l~~~m~~~g~~p~----------------~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~~~~~~~li~ 479 (787)
+++|.+.+++..... |+ .......+..+...+...+|...|....+ ....+..++..+..
T Consensus 103 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~ 180 (323)
T d1fcha_ 103 QRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 180 (323)
T ss_dssp HHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred ccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 999999999988632 22 11112223345556778889999988876 33457788999999
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhccccc
Q 003913 480 SLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEV 559 (787)
Q Consensus 480 ~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~ 559 (787)
.+...|++++|+..|++..... +-+..+|..+...|.+.|++++|++.|++.++ .+|+.
T Consensus 181 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~--------------- 239 (323)
T d1fcha_ 181 LFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALE----LQPGY--------------- 239 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC---------------
T ss_pred HHHHHHHHhhhhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHH----Hhhcc---------------
Confidence 9999999999999999998874 45688999999999999999999999999987 55652
Q ss_pred ccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCccc
Q 003913 560 KKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMH 607 (787)
Q Consensus 560 ~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~ 607 (787)
..+|..|...+...|++++|...++ +.++|++...
T Consensus 240 -------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 276 (323)
T d1fcha_ 240 -------------IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 276 (323)
T ss_dssp -------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred -------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhh
Confidence 5678888889999999999988887 6777766554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.08 E-value=2e-08 Score=101.48 Aligned_cols=190 Identities=12% Similarity=0.078 Sum_probs=156.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003913 345 EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESL 424 (787)
Q Consensus 345 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l 424 (787)
.+..++|..+|++..+.....+...|...+..+.+.|+.++|..+|+++...........|...+..+.+.|..+.|.++
T Consensus 77 ~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i 156 (308)
T d2onda1 77 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence 34568889999998876555567788888999999999999999999998764443456799999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 003913 425 MKEFVETGMKPLMPSYINLTNM-YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTI 503 (787)
Q Consensus 425 ~~~m~~~g~~p~~~t~~~li~~-~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 503 (787)
|+++++.+ +.+...|...... +...|+.+.|..+|+.+++.++.+...|...++.+.+.|+++.|..+|++.......
T Consensus 157 ~~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 157 FKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 99998865 3344455444443 345689999999999999877888999999999999999999999999999887433
Q ss_pred CCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 504 GVN--TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 504 ~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.|. ...|...+.--...|+.+.+.++++++.+
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 443 56899999988899999999999999876
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=1e-07 Score=96.26 Aligned_cols=224 Identities=10% Similarity=0.052 Sum_probs=171.3
Q ss_pred hhhccCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 003913 305 HSYQDNIDKERISLLKKEMQQAGFEEG-KEVLLSVLRVCAKEG-DVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE 382 (787)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 382 (787)
..+.+.+..++|+.+++++.+. .|+ ...|+....++...| ++++|...++...+..+. +..+|+.+...+.+.|+
T Consensus 51 ~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~~~l~~ 127 (315)
T d2h6fa1 51 AVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWLRD 127 (315)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHHHhhcc
Confidence 4455667789999999999884 665 456788888888876 489999999999888765 78899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------HHHH
Q 003913 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM------HDRL 456 (787)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~------~~~a 456 (787)
+++|++.|+++.+.... +...|+.+...+...|++++|...++++++.. +-+...|+.+...+.+.+. +++|
T Consensus 128 ~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~~~a 205 (315)
T d2h6fa1 128 PSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLERE 205 (315)
T ss_dssp CTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhhhhHHh
Confidence 99999999999886433 78899999999999999999999999999864 4467788888777777665 6788
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcC--C-------CHHHHH
Q 003913 457 HLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSS--G-------DFVKAE 527 (787)
Q Consensus 457 ~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~--g-------~~~~A~ 527 (787)
...+...++..+.+...|+.+...+...| .+++.+.++...+...-..+...+..++..|... + .+++|.
T Consensus 206 i~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~ 284 (315)
T d2h6fa1 206 VQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKAL 284 (315)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 88888888867778899988877665544 5777888877766432223556666777766543 2 244555
Q ss_pred HHHHHHH
Q 003913 528 KIYDLMC 534 (787)
Q Consensus 528 ~~~~~m~ 534 (787)
+++..+.
T Consensus 285 ~l~~~l~ 291 (315)
T d2h6fa1 285 ELCEILA 291 (315)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=3.2e-08 Score=100.04 Aligned_cols=198 Identities=9% Similarity=0.074 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003913 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE-FMKSLEIFREMQERLGSASVPAYHKIIE 410 (787)
Q Consensus 332 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (787)
...|+.+-..+.+.+..++|.++++++++..+. +..+|+....++...|+ +++|++.+++..+.... +..+|+.+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhH
Confidence 345667777788999999999999999998865 77889999999888775 89999999999887433 7889999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC----
Q 003913 411 LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGN---- 486 (787)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~---- 486 (787)
.+.+.|++++|+..++++++.. +-+..+|..+...+.+.|++++|...|+.+++..+.+...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchh
Confidence 9999999999999999999854 45689999999999999999999999999999777889999998888877665
Q ss_pred --HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 487 --IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 487 --~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+++|++.+.+..+.. |.+...|+.+...+... ..+++.+.++...+
T Consensus 200 ~~~~~ai~~~~~al~~~--P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDR-GLSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhC--CCchHHHHHHHHHHHhc-ChHHHHHHHHHHHH
Confidence 689999999999875 55788888887665544 45778888887765
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.86 E-value=4.8e-09 Score=103.01 Aligned_cols=128 Identities=12% Similarity=-0.071 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 003913 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN 483 (787)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~ 483 (787)
+|..+...|.+.|++++|...|++.++.. +-+..+|..+..+|.+.|++++|...|+++++..+.+..+|..+...|..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 44445555666666666666666665532 22455666666666666666666666666665444455566666666666
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 484 AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 484 ~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
.|++++|.+.|++..+.. +.+......+..++.+.+..+.+..+.....
T Consensus 118 ~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 166 (259)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 666666666666666553 3344444344444444444444444444433
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.86 E-value=1.2e-08 Score=104.47 Aligned_cols=259 Identities=8% Similarity=-0.031 Sum_probs=137.7
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCCCHHHH-HH---HHHHHHcCCCC-CChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 003913 230 VQGCLDEACSIYNRMIQLGGYQPRPSLH-NS---LFRALVSKPGG-LSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWL 304 (787)
Q Consensus 230 ~~g~~~~A~~l~~~m~~~~g~~pd~~t~-~~---ll~~~~~~~~~-~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 304 (787)
+.+..++|++++++..+. .|+..+. +. ++..+...... ...|.+++|..+++...+..+. +...+..+..+
T Consensus 41 ~~~~~~~al~~~~~~l~~---~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~ 116 (334)
T d1dcea1 41 AGELDESVLELTSQILGA---NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 116 (334)
T ss_dssp TTCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHH
Confidence 345568999999999874 5876543 21 22222221100 0124677788888887766543 33344444434
Q ss_pred hhhccCCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 003913 305 HSYQDNIDKERISLLKKEMQQAGFEEGKEVLL-SVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEF 383 (787)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 383 (787)
......+++++|...+.++.+.. +++...+. .....+...+..++|...++.+.+.++. +..+|+.+...+.+.|++
T Consensus 117 ~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~ 194 (334)
T d1dcea1 117 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 194 (334)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCC
T ss_pred HHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCH
Confidence 45555566777777777776642 22344433 3335555667777777777777776654 566777777777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003913 384 MKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSEC 463 (787)
Q Consensus 384 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 463 (787)
++|...+....+. +.. ...+...+...+..+++...+....... +++..++..+...+...++.++|...+.+.
T Consensus 195 ~~A~~~~~~~~~~----~~~-~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 268 (334)
T d1dcea1 195 PDSGPQGRLPENV----LLK-ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQEL 268 (334)
T ss_dssp CCSSSCCSSCHHH----HHH-HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHh----HHH-HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 7665555443332 011 1112223334444555555555544432 223333444444444455555555555544
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 464 LEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 464 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
.+..+.+..+|..+...|.+.|++++|.+.|++..+.
T Consensus 269 ~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 269 EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp CTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4333333444455555555555555555555555543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=3.9e-08 Score=96.23 Aligned_cols=196 Identities=14% Similarity=0.025 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003913 333 EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELL 412 (787)
Q Consensus 333 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 412 (787)
.+|..+..+|.+.|++++|...|++.++..+. +..+|+.+..+|.+.|++++|++.|++..+.... +..+|..+..+|
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHH
Confidence 35566677778888888888888888877644 6777888888888888888888888888775322 455777778888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc----CCHH
Q 003913 413 CKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA----GNIE 488 (787)
Q Consensus 413 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~----g~~~ 488 (787)
...|++++|...+++.++.. +.+......+..++.+.+..+.+..+...... ..++...++. +..+... +..+
T Consensus 116 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-SDKEQWGWNI-VEFYLGNISEQTLME 192 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-SCCCSTHHHH-HHHHTTSSCHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc-cchhhhhhhH-HHHHHHHHHHHHHHH
Confidence 88888888888888887754 33455555555555566655555554444443 1222222222 2222211 2233
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 489 KAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 489 ~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.+...+....... +-...+|..+...|...|++++|.+.|++.+.
T Consensus 193 ~~~~~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 237 (259)
T d1xnfa_ 193 RLKADATDNTSLA--EHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237 (259)
T ss_dssp HHHHHCCSHHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhcC--cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3333332222211 11234677788888888999999999988875
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.82 E-value=4.7e-07 Score=91.01 Aligned_cols=187 Identities=10% Similarity=0.128 Sum_probs=152.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 003913 312 DKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFR 391 (787)
Q Consensus 312 ~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 391 (787)
..++|..+|++..+...+-+...+...+..+.+.|+++.|..+|+++++........+|...+....+.|.++.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 35778889998887655556677888888999999999999999999987655446689999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--C
Q 003913 392 EMQERLGSASVPAYHKIIEL-LCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKC--R 468 (787)
Q Consensus 392 ~m~~~g~~p~~~t~~~li~~-~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~--~ 468 (787)
++.+.+.. +...|...... +...|+.+.|..+|+.+++. .+.+...+...++.+.+.|+++.|+.+|++.++.+ .
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 99876433 33444433332 34468999999999999986 35568899999999999999999999999998743 3
Q ss_pred C--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 469 P--NRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 469 p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
| ....|...+.--...|+.+.+.++++++.+.
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3 2568999999888999999999999998775
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.76 E-value=1.1e-06 Score=89.45 Aligned_cols=261 Identities=10% Similarity=-0.051 Sum_probs=190.4
Q ss_pred hhHHHHHHHHHHHHHcCCccCHH--HHHHHHHHhhhccCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcC
Q 003913 274 YYLQQAEFIFHNLLTSGLEIQKD--IYSGLIWLHSYQDNIDKERISLLKKEMQQAGF-EEG----KEVLLSVLRVCAKEG 346 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~-~p~----~~t~~~li~~~~~~g 346 (787)
|++++|..++++.+......+.. .......+..+...|++++|...|++..+..- .++ ..++..+...+...|
T Consensus 26 g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (366)
T d1hz4a_ 26 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQG 105 (366)
T ss_dssp TCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 69999999999998765432221 22233345778889999999999998765321 112 235667778888999
Q ss_pred ChHHHHHHHHHHHhC----CCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhc
Q 003913 347 DVEDAEKTWLRLLES----DNGIP---TPAFVYKMEAYAKIGEFMKSLEIFREMQERLG----SASVPAYHKIIELLCKA 415 (787)
Q Consensus 347 ~~~~A~~~~~~m~~~----~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~li~~~~~~ 415 (787)
++..|...+...... ..... ...+..+...+...|+++.|...+........ .....++..+...+...
T Consensus 106 ~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (366)
T d1hz4a_ 106 FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR 185 (366)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhh
Confidence 999999988876542 11111 23455677889999999999999998875422 22345666677788889
Q ss_pred CChHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHhcC
Q 003913 416 EETELTESLMKEFVET--GMKPL----MPSYINLTNMYLNLGMHDRLHLAFSECLEKC----RPNRTIYGIYLESLKNAG 485 (787)
Q Consensus 416 g~~~~A~~l~~~m~~~--g~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~----~p~~~~~~~li~~~~~~g 485 (787)
+....+...+.+.... ..... ...+..+...+...|+++.|...+....+.. ......+..+...|...|
T Consensus 186 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 265 (366)
T d1hz4a_ 186 GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLG 265 (366)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcC
Confidence 9999999988877652 11111 3456667778889999999999999877521 223456777889999999
Q ss_pred CHHHHHHHHHHhhh----CCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 486 NIEKAEEIFNHMHS----DQTIGV-NTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 486 ~~~~A~~l~~~m~~----~~~~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
++++|...+++... .+ ..| ...++..+...|.+.|++++|.+.+++.++
T Consensus 266 ~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 266 EFEPAEIVLEELNENARSLR-LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhcc-cChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999998763 23 233 346788889999999999999999998875
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.74 E-value=2.8e-06 Score=86.35 Aligned_cols=274 Identities=9% Similarity=0.019 Sum_probs=165.2
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHCCCCCC----HhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHH----
Q 003913 184 TKLADYMGKERKFAKCRDIFDDIINQGRVPS----EMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPS---- 255 (787)
Q Consensus 184 ~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd----~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~---- 255 (787)
......+...|++++|+.++++..+.....+ ...++.+...|. ..|++++|+..|++..+...-.++..
T Consensus 16 ~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~---~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 92 (366)
T d1hz4a_ 16 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH---CKGELTRSLALMQQTEQMARQHDVWHYALW 92 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 3345556778888888888888776531111 235666666777 68899999988888765311112211
Q ss_pred HHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCC--CC-H
Q 003913 256 LHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFE--EG-K 332 (787)
Q Consensus 256 t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~--p~-~ 332 (787)
++..+...+... |++..|...+...... . ...+.. +. .
T Consensus 93 ~~~~~~~~~~~~------~~~~~a~~~~~~al~~------------------------------~---~~~~~~~~~~~~ 133 (366)
T d1hz4a_ 93 SLIQQSEILFAQ------GFLQTAWETQEKAFQL------------------------------I---NEQHLEQLPMHE 133 (366)
T ss_dssp HHHHHHHHHHHT------TCHHHHHHHHHHHHHH------------------------------H---HHTTCTTSTHHH
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHH------------------------------h---HhcccchhhHHH
Confidence 112222222222 3455555544433211 0 011111 11 1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCC----H
Q 003913 333 EVLLSVLRVCAKEGDVEDAEKTWLRLLESDN----GIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERL--GSAS----V 402 (787)
Q Consensus 333 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~ 402 (787)
..+..+...+...|+++.+...+........ .....++..+...+...|...++...+.+..... .... .
T Consensus 134 ~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~ 213 (366)
T d1hz4a_ 134 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 213 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHH
Confidence 2344556667778888888887777665422 1223455556677777888888887777654321 1111 2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCC-CHHH
Q 003913 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKP---LMPSYINLTNMYLNLGMHDRLHLAFSECLE-----KCRP-NRTI 473 (787)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~p-~~~~ 473 (787)
..+..+...+...|+.++|...+++..+..... ....+..+..+|...|++++|...++.... +..| ...+
T Consensus 214 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 293 (366)
T d1hz4a_ 214 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN 293 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHH
Confidence 245556667778888888888887766532221 245666778888888999999888888763 2222 2456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 474 YGIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
+..+...|.+.|++++|.+.+++..+
T Consensus 294 ~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 294 LLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 78888889999999999999988755
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.72 E-value=2.5e-09 Score=109.68 Aligned_cols=229 Identities=8% Similarity=-0.065 Sum_probs=159.0
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCHHHHHHH-HHHHHhcCCHHHH
Q 003913 414 KAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM--HDRLHLAFSECLEKCRPNRTIYGIY-LESLKNAGNIEKA 490 (787)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~--~~~a~~~~~~m~~~~~p~~~~~~~l-i~~~~~~g~~~~A 490 (787)
..|.+++|+.+++...+.. +-+...+..+..++...+. +++|...+..+.+..+++...|..+ ...+...|.+++|
T Consensus 85 ~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHH
Confidence 3445677777788777643 3356666777666666654 7788888888877666677776544 4666677888888
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchH
Q 003913 491 EEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSE 570 (787)
Q Consensus 491 ~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~ 570 (787)
+..++++.+.+ +-+...|+.+...+.+.|++++|...++...+ ..|...+.+..
T Consensus 164 l~~~~~~i~~~--p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~-------------------- 217 (334)
T d1dcea1 164 LAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN----VLLKELELVQN-------------------- 217 (334)
T ss_dssp HHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH----HHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH----hHHHHHHHHHH--------------------
Confidence 88888888875 45778888888888888888777665554443 33332111111
Q ss_pred HHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccccCCCCCcceEEeeeccchHH
Q 003913 571 QRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPYKYSTISHPYFC 648 (787)
Q Consensus 571 ~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~~~~t~~~~~~~ 648 (787)
+...+..+.+...+. +..+|.+...+..++.++...|++.+|...+.+.....|....++...+..
T Consensus 218 ------------~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 285 (334)
T d1dcea1 218 ------------AFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRA 285 (334)
T ss_dssp ------------HHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ------------HHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHH
Confidence 111222223333222 345677777888888899999999999888888888888877777777888
Q ss_pred HHHHhhccCcccccccchhhcCChhHHHHHhhcCC
Q 003913 649 FYADKFWPKGRLVIPKLIHRWLTPRALAYWFMYGG 683 (787)
Q Consensus 649 ~~~~g~~~~a~~~~~~mi~~gl~P~~lay~~m~~g 683 (787)
+...|.+++|++.+.+.++ +.|+...||.-+.+
T Consensus 286 ~~~~~~~~eA~~~~~~ai~--ldP~~~~y~~~L~~ 318 (334)
T d1dcea1 286 LDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLRS 318 (334)
T ss_dssp HCTGGGHHHHHHHHHHHHH--HCGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCcccHHHHHHHHH
Confidence 8888999999999999887 58888778775433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.33 E-value=1.7e-05 Score=78.31 Aligned_cols=213 Identities=10% Similarity=0.040 Sum_probs=147.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChHHH
Q 003913 312 DKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES----DNGI-PTPAFVYKMEAYAKIGEFMKS 386 (787)
Q Consensus 312 ~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A 386 (787)
++++|.++|.+. ...|...|++++|.+.|.+..+. +-.+ -..+|..+..+|.+.|++++|
T Consensus 32 ~~~~Aa~~y~~a---------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A 96 (290)
T d1qqea_ 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (290)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHH
Confidence 456666665543 56788999999999999887663 1111 135788889999999999999
Q ss_pred HHHHHHHHHcCCC-CC----HHHHHHHHHHHHh-cCChHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHHhcCCHHH
Q 003913 387 LEIFREMQERLGS-AS----VPAYHKIIELLCK-AEETELTESLMKEFVE----TGMKP-LMPSYINLTNMYLNLGMHDR 455 (787)
Q Consensus 387 ~~~~~~m~~~g~~-p~----~~t~~~li~~~~~-~g~~~~A~~l~~~m~~----~g~~p-~~~t~~~li~~~~~~g~~~~ 455 (787)
.+.+++..+.-.. .+ ..++..+...|-. .|++++|.+.+++..+ .+-.+ ...++..+...|.+.|++++
T Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~ 176 (290)
T d1qqea_ 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHH
Confidence 9999976532111 11 3456666666744 6999999999998765 22112 14568888999999999999
Q ss_pred HHHHHHHHHhcCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC---HHHHHHHHHHHHc--CCCH
Q 003913 456 LHLAFSECLEKCRPNR-------TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN---TRSCNIILSAYLS--SGDF 523 (787)
Q Consensus 456 a~~~~~~m~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~---~~t~~~li~~~~~--~g~~ 523 (787)
|...|+++.+..+.+. ..+..++..+...|+++.|...|++..+...--++ ......++.++.. .+.+
T Consensus 177 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~ 256 (290)
T d1qqea_ 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (290)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999886322221 23445566777889999999999999876410111 2345667777765 3458
Q ss_pred HHHHHHHHHHHHcCCccCHH
Q 003913 524 VKAEKIYDLMCLKKYEIESA 543 (787)
Q Consensus 524 ~~A~~~~~~m~~~g~~~~p~ 543 (787)
++|+..|+.+.+ ++|.
T Consensus 257 ~eai~~y~~~~~----lD~~ 272 (290)
T d1qqea_ 257 SEHCKEFDNFMR----LDKW 272 (290)
T ss_dssp HHHHHHHTTSSC----CCHH
T ss_pred HHHHHHHHHHhh----cCHH
Confidence 899999887664 6664
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.26 E-value=2.8e-05 Score=76.77 Aligned_cols=238 Identities=8% Similarity=0.065 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHH
Q 003913 236 EACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKER 315 (787)
Q Consensus 236 ~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~ 315 (787)
++.+++++..+. .+|....+. .+..... +++++|..+|.++- ..|...+++++
T Consensus 3 ~~~~~l~~aek~--~~~~~~~~~----~~~~~~~----~~~~~Aa~~y~~aa-----------------~~y~~~~~~~~ 55 (290)
T d1qqea_ 3 DPVELLKRAEKK--GVPSSGFMK----LFSGSDS----YKFEEAADLCVQAA-----------------TIYRLRKELNL 55 (290)
T ss_dssp CHHHHHHHHHHH--SSCCCTHHH----HHSCCSH----HHHHHHHHHHHHHH-----------------HHHHHTTCTHH
T ss_pred CHHHHHHHHHHh--cCcchhHHH----HhcCCcc----ccHHHHHHHHHHHH-----------------HHHHHCcCHHH
Confidence 456677776664 355543332 2222211 57899999888763 45667788999
Q ss_pred HHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHH-cCChH
Q 003913 316 ISLLKKEMQQA----GFEEG-KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGI-----PTPAFVYKMEAYAK-IGEFM 384 (787)
Q Consensus 316 a~~l~~~m~~~----g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~~~~~li~~~~~-~g~~~ 384 (787)
|.+.|.+..+. +-.++ ..+|..+..+|.+.|++++|.+.+++..+..... ...++..+...|-. .|+++
T Consensus 56 A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 135 (290)
T d1qqea_ 56 AGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYA 135 (290)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHH
Confidence 99999877653 22222 3578899999999999999999999776532111 13455566777755 69999
Q ss_pred HHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----CH-HHHHHHHHHHHhcCCH
Q 003913 385 KSLEIFREMQER----LGSAS-VPAYHKIIELLCKAEETELTESLMKEFVETGMKP-----LM-PSYINLTNMYLNLGMH 453 (787)
Q Consensus 385 ~A~~~~~~m~~~----g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----~~-~t~~~li~~~~~~g~~ 453 (787)
+|.+.|++..+. +..+. ..+|..+...+...|++++|...|+++....... .. ..+..++..+...|++
T Consensus 136 ~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 215 (290)
T d1qqea_ 136 KAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA 215 (290)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccH
Confidence 999999987532 11111 3457888999999999999999999988743221 11 2345566677889999
Q ss_pred HHHHHHHHHHHhcCC--CC---HHHHHHHHHHHHh--cCCHHHHHHHHHHhhhC
Q 003913 454 DRLHLAFSECLEKCR--PN---RTIYGIYLESLKN--AGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 454 ~~a~~~~~~m~~~~~--p~---~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~ 500 (787)
+.|...++...+-.+ ++ ......|+.+|-. .+.+++|+..|+++.+.
T Consensus 216 ~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~l 269 (290)
T d1qqea_ 216 VAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (290)
T ss_dssp HHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 999999999876222 12 2345667777665 34689999999876653
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.25 E-value=6.2e-06 Score=76.42 Aligned_cols=99 Identities=8% Similarity=-0.049 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHH
Q 003913 435 PLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIIL 514 (787)
Q Consensus 435 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li 514 (787)
|+...+......|.+.|++++|+..|.+.++..+.+...|+.+..+|.+.|++++|+..|++.++.. |-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~--p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC--CCcHHHHHHHH
Confidence 5555666667777777788888887777777566777788888888888888888888888887753 34577788888
Q ss_pred HHHHcCCCHHHHHHHHHHHHH
Q 003913 515 SAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.+|.+.|++++|+..|++.++
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888888887765
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=1.7e-05 Score=66.08 Aligned_cols=90 Identities=18% Similarity=0.094 Sum_probs=72.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCH
Q 003913 444 TNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDF 523 (787)
Q Consensus 444 i~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~ 523 (787)
.+.+.+.|++++|...|...++..+.+...|..+..+|.+.|++++|+..+++..+.+ +.+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhc--cchhhHHHHHHHHHHHccCH
Confidence 4567777888888888888877667778888888888888888888888888888765 56778888888888888888
Q ss_pred HHHHHHHHHHHH
Q 003913 524 VKAEKIYDLMCL 535 (787)
Q Consensus 524 ~~A~~~~~~m~~ 535 (787)
++|+..|++.++
T Consensus 88 ~~A~~~~~~a~~ 99 (117)
T d1elwa_ 88 EEAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 888888888875
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=4.7e-05 Score=69.72 Aligned_cols=119 Identities=13% Similarity=0.041 Sum_probs=53.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003913 413 CKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEE 492 (787)
Q Consensus 413 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 492 (787)
...|++++|++.|.++ ..|+..++..+..+|...|++++|+..|++.++-.+.+...|..+..+|.+.|++++|++
T Consensus 16 ~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~ 91 (192)
T d1hh8a_ 16 ADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK 91 (192)
T ss_dssp HHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHH
Confidence 3344444444444332 123344444444444444444444444444444334444444444444444555555544
Q ss_pred HHHHhhhCCC-------------CCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 493 IFNHMHSDQT-------------IGVN-TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 493 l~~~m~~~~~-------------~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.|++...... .+++ ..++..+..++.+.|++++|.+.|++..+
T Consensus 92 ~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 92 DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp HHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444432100 0000 23444455555555666666555555553
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=3.7e-05 Score=70.51 Aligned_cols=128 Identities=15% Similarity=0.074 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003913 368 PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMY 447 (787)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 447 (787)
..|+- ...+...|++++|++.|+++ ..|+..+|..+..+|...|++++|.+.|++.++.. +-+...|..+..+|
T Consensus 7 ~l~~~-g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~ 80 (192)
T d1hh8a_ 7 SLWNE-GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 80 (192)
T ss_dssp HHHHH-HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHH
Confidence 34543 66778899999999999865 35688899999999999999999999999999865 44688999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 448 LNLGMHDRLHLAFSECLEKCRPN----------------RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 448 ~~~g~~~~a~~~~~~m~~~~~p~----------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
.+.|++++|...|++.+...+.+ ..++..+..+|.+.|++++|.+.|+...+..
T Consensus 81 ~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 81 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999988632222 3567788889999999999999999998864
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=4.5e-05 Score=63.45 Aligned_cols=92 Identities=10% Similarity=-0.015 Sum_probs=70.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH
Q 003913 409 IELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIE 488 (787)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~ 488 (787)
...+.+.|++++|...|.+.++.. +-+...|..+..+|.+.|++++|+..+...++..+.+...|..+..+|...|+++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 455667777777777777777653 4456777777788888888888888888877766677788888888888888888
Q ss_pred HHHHHHHHhhhCC
Q 003913 489 KAEEIFNHMHSDQ 501 (787)
Q Consensus 489 ~A~~l~~~m~~~~ 501 (787)
+|+..|++..+..
T Consensus 89 ~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 89 EAKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC
Confidence 8888888888764
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=2.5e-05 Score=69.24 Aligned_cols=103 Identities=13% Similarity=-0.035 Sum_probs=75.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 003913 408 IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI 487 (787)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~ 487 (787)
....|.+.|++++|...|++.++.. +-+...|..+..+|...|++++|...|+.+++..+.+..+|..+..+|...|++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 3456677788888888888877754 445777778888888888888888888888776667778888888888888888
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHH
Q 003913 488 EKAEEIFNHMHSDQTIGVNTRSCNII 513 (787)
Q Consensus 488 ~~A~~l~~~m~~~~~~~p~~~t~~~l 513 (787)
++|...|++..... +-+...+..+
T Consensus 95 ~eA~~~~~~a~~~~--p~~~~~~~~l 118 (159)
T d1a17a_ 95 RAALRDYETVVKVK--PHDKDAKMKY 118 (159)
T ss_dssp HHHHHHHHHHHHHS--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CCCHHHHHHH
Confidence 88888888887764 2334444443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.09 E-value=7e-06 Score=76.08 Aligned_cols=99 Identities=10% Similarity=-0.009 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003913 400 ASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLE 479 (787)
Q Consensus 400 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~ 479 (787)
|+...+......|.+.|++++|+..|.+.++.. +-+..+|..+..+|.+.|++++|+..|...++-.+-+..+|..+..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 445555555666666666666666666666543 3356666666777777777777777777766544556667777777
Q ss_pred HHHhcCCHHHHHHHHHHhhh
Q 003913 480 SLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 480 ~~~~~g~~~~A~~l~~~m~~ 499 (787)
+|.+.|++++|+..|++..+
T Consensus 81 ~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 77777777777777776654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=8.2e-05 Score=65.73 Aligned_cols=105 Identities=11% Similarity=0.115 Sum_probs=74.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003913 373 KMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM 452 (787)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 452 (787)
....|.+.|++++|+..|++..+... -+...|..+...|...|++++|...|++.++.. +-+..+|..+..+|...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccch-hhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCC
Confidence 35567777888888888887776642 366677777778888888888888888877753 3356777778888888888
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003913 453 HDRLHLAFSECLEKCRPNRTIYGIYLE 479 (787)
Q Consensus 453 ~~~a~~~~~~m~~~~~p~~~~~~~li~ 479 (787)
+++|...+++..+..+-+...+..+..
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~ 120 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQE 120 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 888888888877644555555555433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.04 E-value=0.0041 Score=59.45 Aligned_cols=217 Identities=6% Similarity=-0.019 Sum_probs=156.6
Q ss_pred hhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-
Q 003913 305 HSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAK----EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK- 379 (787)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~- 379 (787)
..+...++.++|++.|++..+.| +...+..|-..|.. ..+...|...+....+.+ +......|...+..
T Consensus 10 ~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~~~~~~ 83 (265)
T d1ouva_ 10 AKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSG 83 (265)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccccccccc
Confidence 44556788999999999888766 55666666666765 668888999988888877 45556666555554
Q ss_pred ---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---
Q 003913 380 ---IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCK----AEETELTESLMKEFVETGMKPLMPSYINLTNMYLN--- 449 (787)
Q Consensus 380 ---~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~--- 449 (787)
..+.+.|...++...+.|. ......+...+.. ......|...+...... .+...+..|...|..
T Consensus 84 ~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~ 157 (265)
T d1ouva_ 84 QGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRG 157 (265)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSS
T ss_pred cccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhhccCCC
Confidence 4677889998888877653 2333333333332 34566777777776663 356777888888876
Q ss_pred -cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc----C
Q 003913 450 -LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN----AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS----S 520 (787)
Q Consensus 450 -~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~----~ 520 (787)
..+...+...+....+ ..+..+...|...|.. ..++++|+.+|++..+.| +...+..|...|.+ .
T Consensus 158 ~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g----~~~a~~~LG~~y~~G~g~~ 231 (265)
T d1ouva_ 158 TPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE----NGGGCFNLGAMQYNGEGVT 231 (265)
T ss_dssp SCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTTSSSS
T ss_pred cccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhccc----CHHHHHHHHHHHHcCCCCc
Confidence 4567778888777765 3467777777777765 568999999999999988 67788888888875 4
Q ss_pred CCHHHHHHHHHHHHHcCCc
Q 003913 521 GDFVKAEKIYDLMCLKKYE 539 (787)
Q Consensus 521 g~~~~A~~~~~~m~~~g~~ 539 (787)
.+.++|.++|++....|..
T Consensus 232 ~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 232 RNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp CCSTTHHHHHHHHHHHTCH
T ss_pred cCHHHHHHHHHHHHHCcCH
Confidence 4789999999999887743
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.00 E-value=2.4e-05 Score=64.60 Aligned_cols=89 Identities=11% Similarity=-0.063 Sum_probs=56.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCC
Q 003913 443 LTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGD 522 (787)
Q Consensus 443 li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~ 522 (787)
+...+.+.|++++|...|++.++..+-+..+|..+...|.+.|++++|+..|++..+.. |.+..+|..+...|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccc--cccccchHHHHHHHHHCCC
Confidence 34455566666666666666665445566666666666666666666666666666653 4456666666666666666
Q ss_pred HHHHHHHHHHH
Q 003913 523 FVKAEKIYDLM 533 (787)
Q Consensus 523 ~~~A~~~~~~m 533 (787)
+++|++.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.89 E-value=1.9e-05 Score=66.18 Aligned_cols=98 Identities=10% Similarity=-0.006 Sum_probs=75.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCCC-HHHHHHHHHH
Q 003913 441 INLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGN---IEKAEEIFNHMHSDQTIGVN-TRSCNIILSA 516 (787)
Q Consensus 441 ~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~~~~~p~-~~t~~~li~~ 516 (787)
..|++.+...+++++|++.|+..+...+.+..++..+..++.+.++ +++|+.+|+++...+ -.|+ ..+|..|..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~-~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHH
Confidence 3567777788888888888888888667788888888888887554 456888998888764 1222 2477788888
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCccCHH
Q 003913 517 YLSSGDFVKAEKIYDLMCLKKYEIESA 543 (787)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~g~~~~p~ 543 (787)
|.+.|++++|++.|+++++ ++|+
T Consensus 82 y~~~g~~~~A~~~~~~aL~----~~P~ 104 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ----TEPQ 104 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH----HCTT
T ss_pred HHHHhhhHHHHHHHHHHHH----hCcC
Confidence 9999999999999999887 6665
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.86 E-value=7.7e-05 Score=61.39 Aligned_cols=89 Identities=8% Similarity=-0.092 Sum_probs=65.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 003913 408 IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI 487 (787)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~ 487 (787)
+...+.+.|++++|...|++.++.. +-+..+|..+..+|.+.|++++|+..|++.++..+.+..+|..|...|...|++
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 4556667777777777777777643 235677777777777777777777777777776666778888888888888888
Q ss_pred HHHHHHHHHh
Q 003913 488 EKAEEIFNHM 497 (787)
Q Consensus 488 ~~A~~l~~~m 497 (787)
++|++.|++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887764
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=1e-05 Score=67.94 Aligned_cols=113 Identities=12% Similarity=0.081 Sum_probs=92.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 003913 475 GIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDF---VKAEKIYDLMCLKKYEIESAWMEKLDYV 551 (787)
Q Consensus 475 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~~~p~~~~~l~~~ 551 (787)
..|+..+...+++++|++.|++....+ +.+..++..+..++.+.++. ++|+.+|+++++.+ +.|.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~--p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~--~~~~-------- 70 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEE-------- 70 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHH--------
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc--CCch--------
Confidence 467888889999999999999999986 67889999999999876654 56999999988632 2232
Q ss_pred HhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHch
Q 003913 552 LSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYH 619 (787)
Q Consensus 552 ~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g 619 (787)
...+|..|..+|...|+++.|+..++ +.++|++..+..++..+..+..
T Consensus 71 --------------------~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~ 120 (122)
T d1nzna_ 71 --------------------QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120 (122)
T ss_dssp --------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence 14578888999999999999999998 8899999998888877766543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=0.0002 Score=60.48 Aligned_cols=108 Identities=13% Similarity=0.067 Sum_probs=77.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-----HHHHHHHH
Q 003913 440 YINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN-----TRSCNIIL 514 (787)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~-----~~t~~~li 514 (787)
+-.+...|.+.|++++|+..|.+.++..+.+..+|..+..+|.+.|++++|+..++++++...-.+. ..+|..+.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 4456677888888888888888888766777888888888888888888888888887763200011 24677777
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHH
Q 003913 515 SAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLD 549 (787)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~ 549 (787)
..+...+++++|+..|++.+... .+++.+..+.
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~~--~~~~~~~~l~ 119 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQ 119 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC--CCHHHHHHHH
Confidence 78888888888888888876532 5565544443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.71 E-value=0.018 Score=54.69 Aligned_cols=232 Identities=13% Similarity=0.060 Sum_probs=113.2
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc-CCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003913 182 LATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLS-APVQGCLDEACSIYNRMIQLGGYQPRPSLHNSL 260 (787)
Q Consensus 182 ~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~-~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~l 260 (787)
.+..|-..+-+.+++++|++.|++..+.| |..++-.|-..|.. .....+...|...+...... + .| .....+
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~-~-~~--~a~~~l 76 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-N-YS--NGCHLL 76 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T-CH--HHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc-c-cc--chhhcc
Confidence 34444445556666777777777666655 44444444444431 00144666666666665553 1 12 112222
Q ss_pred HHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003913 261 FRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLR 340 (787)
Q Consensus 261 l~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~ 340 (787)
...+... .......+.|...++...+.|........ ................+...+...... .+...+..|..
T Consensus 77 ~~~~~~~--~~~~~~~~~a~~~~~~a~~~g~~~a~~~l-~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~ 150 (265)
T d1ouva_ 77 GNLYYSG--QGVSQNTNKALQYYSKACDLKYAEGCASL-GGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGS 150 (265)
T ss_dssp HHHHHHT--SSSCCCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHH
T ss_pred ccccccc--cccchhhHHHHHHHhhhhhhhhhhHHHhh-cccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhh
Confidence 2222111 00113566666666666665543111111 111122233344455555555554442 24455555555
Q ss_pred HHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003913 341 VCAK----EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK----IGEFMKSLEIFREMQERLGSASVPAYHKIIELL 412 (787)
Q Consensus 341 ~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 412 (787)
.|.. ..+...+...++...+.| +..+...|...|.. ..++++|...|.+..+.| +...+..|...|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y 224 (265)
T d1ouva_ 151 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 224 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred hhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHH
Confidence 5553 344555666666665555 44555445544544 345666666666666554 344555555555
Q ss_pred Hh----cCChHHHHHHHHHHHHcC
Q 003913 413 CK----AEETELTESLMKEFVETG 432 (787)
Q Consensus 413 ~~----~g~~~~A~~l~~~m~~~g 432 (787)
.. ..+.++|.+.|++..+.|
T Consensus 225 ~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 225 YNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HcCCCCccCHHHHHHHHHHHHHCc
Confidence 43 225566666666666655
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=0.00055 Score=60.90 Aligned_cols=131 Identities=15% Similarity=0.064 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003913 368 PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMY 447 (787)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 447 (787)
..+......|.+.|++++|+..|++.+..-.... +....-......+. ..+|+.+..+|
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~--------------~~~~~~~~~~~~~~-------~~~~~nla~~y 72 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYES--------------SFSNEEAQKAQALR-------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCC--------------CCCSHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc--------------ccchHHHhhhchhH-------HHHHHHHHHHH
Confidence 3444556677777788888777777665311000 00000001111111 24677788889
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCC
Q 003913 448 LNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSG 521 (787)
Q Consensus 448 ~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g 521 (787)
.+.|++++|+..++..++..+.++.+|..+..+|...|++++|+..|++..+.. |-|......+-...-+.+
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--P~n~~~~~~l~~~~~~~~ 144 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIR 144 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHH
Confidence 999999999999999888667788999999999999999999999999998864 335555555544443333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.62 E-value=0.0011 Score=58.80 Aligned_cols=133 Identities=8% Similarity=-0.018 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL 411 (787)
Q Consensus 332 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 411 (787)
...+......+.+.|++++|...|.+.++....... ....-......+. ..+|+.+..+
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~--------------~~~~~~~~~~~~~-------~~~~~nla~~ 71 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--------------FSNEEAQKAQALR-------LASHLNLAMC 71 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--------------CCSHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc--------------cchHHHhhhchhH-------HHHHHHHHHH
Confidence 345566677899999999999999988765321100 0011111111111 2356667777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 003913 412 LCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGN 486 (787)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~ 486 (787)
|.+.|++++|+..+++.++.. +-+..++..+..+|...|++++|...|+..++..+-|..+...+-...-+.+.
T Consensus 72 y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~ 145 (170)
T d1p5qa1 72 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR 145 (170)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred HHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 888888888888888888754 33677888888888888888888888888877545566666665555444433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.61 E-value=0.0014 Score=57.92 Aligned_cols=95 Identities=16% Similarity=0.098 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 003913 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAY 517 (787)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~ 517 (787)
.+|+.+..+|.+.|++++|+..++..++..+.+..+|..+..+|...|++++|.+.|+++.+.. |.+...+..+-...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~--P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 4677788889999999999999999988778889999999999999999999999999999875 45666666555554
Q ss_pred HcCCCHH-HHHHHHHHHH
Q 003913 518 LSSGDFV-KAEKIYDLMC 534 (787)
Q Consensus 518 ~~~g~~~-~A~~~~~~m~ 534 (787)
.+.+... ...++|..|.
T Consensus 143 ~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 143 KKAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 4444332 3444555444
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.53 E-value=0.0017 Score=56.44 Aligned_cols=63 Identities=17% Similarity=-0.009 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
.+|+.+..+|.+.|++++|++.+...++..+.++.+|..+..+|...|++++|+..|++..+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355666666677777777777777666655666667777777777777777777777766664
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.51 E-value=0.0006 Score=60.58 Aligned_cols=78 Identities=10% Similarity=0.007 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 003913 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA 516 (787)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~ 516 (787)
...|..+..+|.+.|++++|+..+..+++..+.+..+|..+..+|.+.|++++|++.|++..+.. +.|...+..+...
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~--p~n~~~~~~l~~~ 154 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKV 154 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 34566666777777777777777777776556667777777777777777777777777777653 3344444444433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.44 E-value=0.0018 Score=57.80 Aligned_cols=126 Identities=8% Similarity=-0.078 Sum_probs=86.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 003913 406 HKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG 485 (787)
Q Consensus 406 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g 485 (787)
..........|++++|.+.|.+.+.. .+... +......+-+...-..+. ......+..+...+.+.|
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~--------l~~~~~~~w~~~~r~~l~---~~~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALRE--WRGPV--------LDDLRDFQFVEPFATALV---EDKVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT--CCSST--------TGGGTTSTTHHHHHHHHH---HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhh--Ccccc--------cccCcchHHHHHHHHHHH---HHHHHHHHHHHHHHHHCC
Confidence 34446778889999999998888863 11100 000000000001111111 112467788999999999
Q ss_pred CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----cCCccCHHHHH
Q 003913 486 NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL-----KKYEIESAWME 546 (787)
Q Consensus 486 ~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~p~~~~ 546 (787)
++++|+..++++.+.. +-+...|..++.+|.+.|+..+|++.|+++.+ -|+.|.|.+..
T Consensus 82 ~~~~Al~~~~~al~~~--P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 82 RASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp CHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred CchHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 9999999999999985 66889999999999999999999999999854 47777777633
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.43 E-value=0.0019 Score=56.04 Aligned_cols=77 Identities=9% Similarity=0.037 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 003913 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLES 480 (787)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~ 480 (787)
.+|+.+..+|.+.|++++|++.+.+.++.. +.+..+|..+..+|...|++++|...|...++..|-|..+...+-..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 144 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 144 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 467778888899999999999999988864 45788999999999999999999999999888656677766655443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.42 E-value=0.029 Score=54.92 Aligned_cols=47 Identities=4% Similarity=0.171 Sum_probs=32.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 003913 477 YLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAE 527 (787)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~ 527 (787)
++..+-+.+++.-....++.....| +....++|...|...++++.-.
T Consensus 254 ~V~~~~k~~~l~li~p~Le~v~~~n----~~~vn~al~~lyie~~d~~~l~ 300 (336)
T d1b89a_ 254 AVNYFSKVKQLPLVKPYLRSVQNHN----NKSVNESLNNLFITEEDYQALR 300 (336)
T ss_dssp HHHHHHHTTCTTTTHHHHHHHHTTC----CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHcC----hHHHHHHHHHHHhCcchhHHHH
Confidence 4555556677777777777766655 5678888888888888865433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.38 E-value=0.0025 Score=53.28 Aligned_cols=93 Identities=13% Similarity=0.123 Sum_probs=51.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCC----HHHHHHHHH
Q 003913 407 KIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE---KCRPN----RTIYGIYLE 479 (787)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~p~----~~~~~~li~ 479 (787)
.+...+.+.|++++|...|.+.++.. +.+..++..+..+|.+.|++++|...+..+++ ..... ..+|..+..
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555543 23455555556666666666666666655543 11111 135556666
Q ss_pred HHHhcCCHHHHHHHHHHhhhC
Q 003913 480 SLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 480 ~~~~~g~~~~A~~l~~~m~~~ 500 (787)
.+...+++++|++.|++....
T Consensus 88 ~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhc
Confidence 666667777777777666553
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.37 E-value=0.0014 Score=58.09 Aligned_cols=86 Identities=10% Similarity=-0.000 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 003913 401 SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLES 480 (787)
Q Consensus 401 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~ 480 (787)
+...|..+..++.+.|++++|+..+.+.++.. +.+..+|..+..+|.+.|++++|...|+.+++-.+.|..++..|...
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~ 154 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV 154 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34567778888999999999999999998754 44678899999999999999999999999988666677777777665
Q ss_pred HHhcCCH
Q 003913 481 LKNAGNI 487 (787)
Q Consensus 481 ~~~~g~~ 487 (787)
..+....
T Consensus 155 ~~~l~~~ 161 (169)
T d1ihga1 155 KQKIKAQ 161 (169)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444333
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=2.1e-05 Score=84.26 Aligned_cols=207 Identities=9% Similarity=-0.005 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003913 315 RISLLKKEMQQAGFEEGK-EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREM 393 (787)
Q Consensus 315 ~a~~l~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 393 (787)
+|.+.|++..+ ++||. ..+..+-.++...|++++| +++++..++. ....++. ....-...+..+.+.++..
T Consensus 4 eA~q~~~qA~~--l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~-~a~~~~~--e~~Lw~~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEV--LKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLE-YALDKKV--EQDLWNHAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHH--HHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHH-HHHHHTH--HHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHH--cCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChh-hHHHHhH--HHHHHHHHHHHHHHHHHHh
Confidence 57777877765 35553 3455666677777777766 6666654321 0111211 1111112245677777777
Q ss_pred HHcCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003913 394 QERLGSASVPAYHKIIELLC--KAEETELTESLMKEFVETGMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN 470 (787)
Q Consensus 394 ~~~g~~p~~~t~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~ 470 (787)
.+....++..-......++. ..+.++.|...+....+ +.| +...+..+...+.+.|+.++|...+.....-. .
T Consensus 76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~ 151 (497)
T d1ya0a1 76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C 151 (497)
T ss_dssp HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------CCHHHHHH--H
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H
Confidence 65544444333222222221 22334444444433332 333 46678888888999999999998887766411 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 471 RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
..++..|.+.+...|++++|+..|++..+.. |-+..+|+.|...|...|+..+|+..|.+.+.
T Consensus 152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~--P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLV--PSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3578888999999999999999999999874 55678999999999999999999999999986
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.30 E-value=0.0021 Score=56.84 Aligned_cols=94 Identities=12% Similarity=0.058 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003913 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLK 482 (787)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~ 482 (787)
..|+.+..+|.+.|++++|+..+++.++.. +.+..+|..+..+|...|++++|...|..+++..+.+..++..+-....
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 346667778888899999999998888754 5568888888899999999999999999988766677777777666555
Q ss_pred hcCCHH-HHHHHHHHh
Q 003913 483 NAGNIE-KAEEIFNHM 497 (787)
Q Consensus 483 ~~g~~~-~A~~l~~~m 497 (787)
+.+... ...++|..|
T Consensus 144 ~~~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 144 KAKEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHH
Confidence 544332 344444444
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.27 E-value=0.00073 Score=58.16 Aligned_cols=78 Identities=13% Similarity=0.038 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcC
Q 003913 452 MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG-----------NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSS 520 (787)
Q Consensus 452 ~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g-----------~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~ 520 (787)
.+++|+..|++.++..+.+..+|..+..+|...| .+++|.+.|++..+. .|+...|..-+..+
T Consensus 56 ~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l---~P~~~~~~~~L~~~--- 129 (145)
T d1zu2a1 56 MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE---QPDNTHYLKSLEMT--- 129 (145)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc---CCCHHHHHHHHHHH---
Confidence 3456777777777655667777777777776654 368888889888885 46666665544444
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 003913 521 GDFVKAEKIYDLMCLKKY 538 (787)
Q Consensus 521 g~~~~A~~~~~~m~~~g~ 538 (787)
.+|.+++.+..+.|+
T Consensus 130 ---~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 130 ---AKAPQLHAEAYKQGL 144 (145)
T ss_dssp ---HTHHHHHHHHHHSSS
T ss_pred ---HHHHHHHHHHHHHhc
Confidence 456777777776664
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.10 E-value=0.0036 Score=55.75 Aligned_cols=123 Identities=7% Similarity=0.024 Sum_probs=88.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003913 372 YKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG 451 (787)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 451 (787)
.........|++++|...|.+..... +... + ......+-+...-..+... ....+..+..++.+.|
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~-----l---~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREW--RGPV-----L---DDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC--CSST-----T---GGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--cccc-----c---ccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCC
Confidence 34567888999999999999988641 1111 0 0001111111111112111 1456788899999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CCCCCCCHHH
Q 003913 452 MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS-----DQTIGVNTRS 509 (787)
Q Consensus 452 ~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~~~p~~~t 509 (787)
++++|...++.+++..+-+...|..++.+|.+.|+..+|++.|+++.. .| +.|...+
T Consensus 82 ~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG-~~P~~~l 143 (179)
T d2ff4a2 82 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLG-IDPGPTL 143 (179)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHS-CCCCHHH
T ss_pred CchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC-CCcCHHH
Confidence 999999999999997788999999999999999999999999999744 46 7887654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.94 E-value=0.17 Score=49.15 Aligned_cols=124 Identities=13% Similarity=0.108 Sum_probs=68.0
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g 232 (787)
.|.+.|.++.|..++..+.. |..++..+.+.+++..|.+++.+.. +..+|.-+..++. +..
T Consensus 23 ~c~~~~lye~A~~lY~~~~d----------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~---~~~ 83 (336)
T d1b89a_ 23 RCYDEKMYDAAKLLYNNVSN----------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACV---DGK 83 (336)
T ss_dssp ------CTTTHHHHHHHTTC----------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHH---HTT
T ss_pred HHHHCCCHHHHHHHHHhCCC----------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHH---hCc
Confidence 56677888888888765432 3456666777788887777765441 5667777777777 444
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccC
Q 003913 233 CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDN 310 (787)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 310 (787)
...-| ++... +...+......++..+-.. |.+++...+++...... ..+..+++.++ ..+++.
T Consensus 84 e~~la-----~i~~~-~~~~~~d~l~~~v~~ye~~------~~~e~Li~~Le~~~~~~-~~~~~~~~~L~--~lyak~ 146 (336)
T d1b89a_ 84 EFRLA-----QMCGL-HIVVHADELEELINYYQDR------GYFEELITMLEAALGLE-RAHMGMFTELA--ILYSKF 146 (336)
T ss_dssp CHHHH-----HHTTT-TTTTCHHHHHHHHHHHHHT------TCHHHHHHHHHHHTTST-TCCHHHHHHHH--HHHHTT
T ss_pred HHHHH-----HHHHH-HhhcCHHHHHHHHHHHHHc------CChHHHHHHHHHHHcCC-ccchHHHHHHH--HHHHHh
Confidence 44332 12111 2233444445566666554 56777777777654321 33555666665 344443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.94 E-value=0.00093 Score=63.91 Aligned_cols=121 Identities=7% Similarity=-0.058 Sum_probs=82.1
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003913 413 CKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEE 492 (787)
Q Consensus 413 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 492 (787)
.+.|++++|+..+++.++.. +-|...+..+...|+..|++++|...|+...+..+-+...+..+...+...+..+++..
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~ 85 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQ 85 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHH
Confidence 45678888888888888754 45678888888888888888888888888877555556666666666555554444433
Q ss_pred HHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 493 IFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 493 l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
-.......+ -+++...+......+.+.|+.++|.+.++++.+
T Consensus 86 ~~~~~~~~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 86 GAATAKVLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp SCCCEECCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred Hhhhhhccc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 322222222 123344555556778889999999999999886
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.90 E-value=0.00035 Score=74.40 Aligned_cols=108 Identities=9% Similarity=-0.010 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003913 336 LSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKA 415 (787)
Q Consensus 336 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 415 (787)
..+...+.+.|+.++|...+....+..+ ..++..+...+...|++++|...|++..+.. +-+..+|+.|...+...
T Consensus 124 ~~lg~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~ 199 (497)
T d1ya0a1 124 SQLGIISNKQTHTSAIVKPQSSSCSYIC---QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSK 199 (497)
T ss_dssp -------------------CCHHHHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHT
T ss_pred HHhHHHHHhCCCHHHHHHHHHHHhCCCH---HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHc
Confidence 3333444444444444444333332210 1234444445555555555555555544431 11234455555555555
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003913 416 EETELTESLMKEFVETGMKPLMPSYINLTNMYL 448 (787)
Q Consensus 416 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 448 (787)
|+..+|...|.+.+... .|-..++..|...+.
T Consensus 200 ~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 200 GDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS 231 (497)
T ss_dssp TCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Confidence 55555555555544432 334444444444443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.78 E-value=8e-05 Score=71.66 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=35.6
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 483 NAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 483 ~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+.|++++|+..+++.++.. |-|...+..+...|+..|++++|.+.|+...+
T Consensus 8 ~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4577777777777777664 55667777777777777777777777777765
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.78 E-value=0.0063 Score=52.74 Aligned_cols=92 Identities=12% Similarity=0.005 Sum_probs=64.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh--cCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCC-
Q 003913 444 TNMYLNLGMHDRLHLAFSECLE--KCRPN----------RTIYGIYLESLKNAGNIEKAEEIFNHMHSD----QTIGVN- 506 (787)
Q Consensus 444 i~~~~~~g~~~~a~~~~~~m~~--~~~p~----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~~p~- 506 (787)
...+.+.|++++|+..|.+.++ ...|+ ..+|+.+..+|.+.|++++|.+.+++..+. ....++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 4445566777777777777665 11121 357888888888888888888888877642 101122
Q ss_pred ----HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 507 ----TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 507 ----~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
...|+.+..+|...|++++|+..|++.++
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 23577788999999999999999999886
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.62 E-value=0.0016 Score=55.84 Aligned_cols=91 Identities=11% Similarity=0.018 Sum_probs=69.6
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 003913 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA----------GNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA 516 (787)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~ 516 (787)
|-+.+.+++|...|+..++..|.+..++..+..+|... +.+++|++.|++.++.. |.+..+|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~--P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc--chhhHHHhhHHHH
Confidence 44556677777777777776677777777777777643 45689999999999875 5678999999999
Q ss_pred HHcCCC-----------HHHHHHHHHHHHHcCCccCHH
Q 003913 517 YLSSGD-----------FVKAEKIYDLMCLKKYEIESA 543 (787)
Q Consensus 517 ~~~~g~-----------~~~A~~~~~~m~~~g~~~~p~ 543 (787)
|...|+ +++|.+.|++.++ ++|+
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~----l~P~ 118 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVD----EQPD 118 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH----HCTT
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhcccc----cCCC
Confidence 877653 6888888888886 6665
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.41 E-value=0.033 Score=47.88 Aligned_cols=62 Identities=13% Similarity=0.018 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 438 PSYINLTNMYLNLGMHDRLHLAFSECLEK------CRPN-----RTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~------~~p~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
.+|+.+..+|.+.|++++|...++..++. ..++ ..+|+.+..+|...|++++|++.|++..+
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777776531 1121 23567788889999999999999888664
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.87 E-value=0.022 Score=44.28 Aligned_cols=28 Identities=11% Similarity=0.150 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 473 IYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
+++.|..+|.+.|++++|++.++++.+.
T Consensus 48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 48 VLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 4444444444444444444444444443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.65 E-value=0.017 Score=44.98 Aligned_cols=70 Identities=9% Similarity=-0.028 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC----CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHH
Q 003913 471 RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ----TIGVN-TRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAW 544 (787)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~----~~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~ 544 (787)
...+-.+...+.+.|++++|...|++..+.. ...++ ..+++.|..+|.+.|++++|+..++++++ ++|+.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~----l~P~~ 79 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE----LDPEH 79 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH----hCcCC
Confidence 3444567788888999999999998876531 01122 56899999999999999999999999997 66663
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.24 E-value=0.97 Score=35.72 Aligned_cols=140 Identities=15% Similarity=0.048 Sum_probs=97.3
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003913 377 YAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRL 456 (787)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 456 (787)
+.-.|.+++..++..+.... .+..-||-+|--....-+-+-..++++..-+. .| ...++++...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHH
Confidence 34457778888888777665 26666777776666666666555555554331 11 1223444444
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 003913 457 HLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 457 ~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (787)
...+-.+ ..+....+..++.+.++|+-+.-.++++.+.+.+ +|++...-.+..||.+-|...+|-+++.+..++
T Consensus 76 v~C~~~~----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~--~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 76 VECGVIN----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN--EVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHT----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 4333332 3455667777899999999999999999987776 678888889999999999999999999999998
Q ss_pred CC
Q 003913 537 KY 538 (787)
Q Consensus 537 g~ 538 (787)
|.
T Consensus 150 G~ 151 (161)
T d1wy6a1 150 GE 151 (161)
T ss_dssp TC
T ss_pred hH
Confidence 85
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.90 E-value=0.7 Score=37.67 Aligned_cols=80 Identities=14% Similarity=0.151 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc----CCCH
Q 003913 452 MHDRLHLAFSECLEKCRPNRTIYGIYLESLKN----AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS----SGDF 523 (787)
Q Consensus 452 ~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~----~g~~ 523 (787)
+.++|...+.+..+. -+......|...|.. ..+.++|.++|++..+.| +......|...|.. ..+.
T Consensus 38 ~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g----~~~a~~~Lg~~y~~G~gv~~d~ 111 (133)
T d1klxa_ 38 NKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN----DQDGCLILGYKQYAGKGVVKNE 111 (133)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC----cchHHHHHHHHHHcCCccCCCH
Confidence 444555555544431 133444444444443 235677777777777666 44555555555554 3467
Q ss_pred HHHHHHHHHHHHcC
Q 003913 524 VKAEKIYDLMCLKK 537 (787)
Q Consensus 524 ~~A~~~~~~m~~~g 537 (787)
++|.++|++..+.|
T Consensus 112 ~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 112 KQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCC
Confidence 77777777766655
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.21 E-value=1.1 Score=36.38 Aligned_cols=17 Identities=12% Similarity=-0.039 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHcC
Q 003913 274 YYLQQAEFIFHNLLTSG 290 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~ 290 (787)
.++++|...|.+..+.|
T Consensus 7 kd~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHCC
Confidence 46677777777766665
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.15 E-value=2.1 Score=33.71 Aligned_cols=136 Identities=11% Similarity=0.135 Sum_probs=98.4
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCCh
Q 003913 342 CAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPA---YHKIIELLCKAEET 418 (787)
Q Consensus 342 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~li~~~~~~g~~ 418 (787)
+.-.|.++++.++..+..... +..-||.+|--....-+.+-..++++.+-+. -|... ...++..+...+.
T Consensus 12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDls~C~Nlk~vv~C~~~~n~- 84 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLDKCQNLKSVVECGVINNT- 84 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGGGCSCTHHHHHHHHHTTC-
T ss_pred HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh---cCchhhhcHHHHHHHHHHhcc-
Confidence 445799999999999988765 6778888887777777777777777665432 22211 1223344433332
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 003913 419 ELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMH 498 (787)
Q Consensus 419 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 498 (787)
+..-+...++...+.|+-+.-.+++..+.+..++++...-.+..+|.+.|...+|-+++.+..
T Consensus 85 -----------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~AC 147 (161)
T d1wy6a1 85 -----------------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEAC 147 (161)
T ss_dssp -----------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 233445566777888888899999999888778888888899999999999999999999999
Q ss_pred hCC
Q 003913 499 SDQ 501 (787)
Q Consensus 499 ~~~ 501 (787)
++|
T Consensus 148 e~G 150 (161)
T d1wy6a1 148 KKG 150 (161)
T ss_dssp HTT
T ss_pred HHh
Confidence 888
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.80 E-value=1.5 Score=34.89 Aligned_cols=69 Identities=10% Similarity=0.063 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHH
Q 003913 469 PNRTIYGIYLESLKNAG---NIEKAEEIFNHMHSDQTIGVNT-RSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESA 543 (787)
Q Consensus 469 p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~~~~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~ 543 (787)
+.+.|--....++++.. ++++|+.+|++..+.+ +.+. ..+..|.-+|.+.|++++|.++++.+++ ++|+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~--p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~----ieP~ 105 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE----HERN 105 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTT
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc----cCCC
Confidence 44555555556666543 4567777777777653 2333 4556666777777888888888777776 5665
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.05 E-value=3.8 Score=32.43 Aligned_cols=68 Identities=7% Similarity=0.014 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 434 KPLMPSYINLTNMYLNLGM---HDRLHLAFSECLEKCRPN-RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 434 ~p~~~t~~~li~~~~~~g~---~~~a~~~~~~m~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
.|...|-.....++.+... .++|+.+++.+.+..+.+ ...+-.|.-+|.+.|++++|.+.++.+.+..
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 3556666666777776543 557888888877654444 3567777888888888888888888888853
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.20 E-value=2.3 Score=31.80 Aligned_cols=62 Identities=13% Similarity=0.054 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003913 418 TELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLE 479 (787)
Q Consensus 418 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~ 479 (787)
.-++.+-+..+....+.|.+.+..+.+++|-+.+++..|.++|+.+...+.++...|..+++
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yilq 83 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 83 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 33555556666666777888888888888888888888888888777655555556666554
|
| >d1r7ma1 d.95.2.1 (A:3-120) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Homing endonuclease-like superfamily: Homing endonucleases family: Group I mobile intron endonuclease domain: DNA endonuclease I-SceI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.34 E-value=2.2 Score=33.61 Aligned_cols=88 Identities=24% Similarity=0.358 Sum_probs=57.1
Q ss_pred cCCchHHHHHHHHHHhhhhhhccchhhcceeEEEEEccCCcccHHHHHHHHHHchhhcCCCccc---cCCCCC--cceEE
Q 003913 565 LNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHEWLHPSFKV---SDGNDD--IPYKY 639 (787)
Q Consensus 565 ~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~---~~~~~~--~p~~~ 639 (787)
.+++.++..++.++||+.......-..+.-.+..+. . ....+-++|.....|-...+.. .....+ ..+.|
T Consensus 25 ~~Lt~~q~eilvG~LLGDg~i~~~~~~~r~r~~~~~--~---~~~Yl~~ly~~f~~~~~s~p~~~~~~~~~gk~~~~~~F 99 (118)
T d1r7ma1 25 IELNIEQFEAGIGLILGDAYIRSRDEGKTYCMQFEW--K---NKAYMDHVCLLYDQWVLSPPHKKERVNHLGNLVITWGA 99 (118)
T ss_dssp CSCCHHHHHHHHHHHHTTCEEECSSSSSCBEEEEEE--S---CHHHHHHHHHHTGGGCCSCCEEEEEECTTSCEEEEEEE
T ss_pred cccCHHHHHHHHHhhccccEEEecCCCccEEEEEec--c---hHHHHHHHHHHHHHHcCCCceeEEEecCCCCEEEEEEE
Confidence 357777889999999987766543333333333333 2 2344557788777776554444 122222 25679
Q ss_pred eeeccchHHHHHHhhccC
Q 003913 640 STISHPYFCFYADKFWPK 657 (787)
Q Consensus 640 ~t~~~~~~~~~~~g~~~~ 657 (787)
+|+.+.+|+++++.||.+
T Consensus 100 ~T~s~~sfn~~~~lFY~n 117 (118)
T d1r7ma1 100 QTFKHQAFNKLANLFIVN 117 (118)
T ss_dssp ECCCBGGGHHHHHHHEET
T ss_pred EEEecHHHHHHHHHhccC
Confidence 999999999999999875
|